Citrus Sinensis ID: 009241

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
Protein Sequence
MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEccccHHHHHHccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccEEEEEEEEEcccEEEcHHcccccccccccEEEEccEEEEEEEEcccccccEEEEEEEEEccccEEEEEccccccccEEEccccccHHHHHHHcccccHHHHHHcccccccccccccccccccccccEEEEcccccccHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHcHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHcccccccccccccHHEEEHHHcccEEEEEEEEEcccccHHHHHHHHcccccEEEEcccEcHHHcHHHHEHHHHHccHHcccccccEEEEEcccccEEEEEcEccHHHHccccEEcEccccccccccccHHHHHHHHHHHHHHHcEcccccHHHHHHHHHHHHcccccEEEEccEcccEEEEcEEcEccccEEccHHHHHHHcccccEEEEEccEEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEEEEEEEccHHHHHHHHHHHccEEcHHHHHHccccccEEcccccEEEEccEEEEEEEccccccccccccEEEEcHcccEEEccccccccccEEEEcccccccEEEEEEcccccEEEEEEcccccccccEcccccccHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccEEEEEEccccccccccccHHHHHHHHHHHcEEccccEEcccEcccEccccEEcccEcEEEccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mdlrclrlSFVATLATFLFFHDFcacqkaapnysfmrnataakpvsyydyivigggtagcplaASLSQNASVLLLergdspygnpnitnsgsfsaeladlsptspsqrfisedgvvSTRArvlgggtcinagfytraepyyareagwdgrlvNESYQWVEKkvvfrppmqRWQSALRDGLVevgvlpyngftydhlygtkiggtiidqnsqrhTAADLLEYANPSGLTVLLHASVHKILFrnkgkarpvahgvvfrdatdaEHIAYLRNGPKNEIIVsagalgspqllmlsgvgpadhlkahnitvvldqplvgqgmsdnpmnaifvpspvpVEVSLIQVVGItqfgsyiegasgvnfaggspsprpyrggfifekiigpvstghlelrtrnpndtpsvtfnyfkepedlqRCVQGISTIEKIIESksfskfkydnmSVETLLNMTasmplnllpkhsntstslEQFCRDTVMTIWHyhggcqvgkvvdhdykvlGVDAlrvvdgstfyyspgtnpqaTVMMLGRYMGVRILSERLASN
Flexible Loop (DISEMBL)
MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRarvlgggtcinagfytRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFrnkgkarpvahGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIiesksfskfkYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGStfyyspgtnpqatVMMLGRYMGVRILSERLASN
Low Complexity Region (SEG)
MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAggspsprpyrggFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGistiekiiesksfskfkYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN
Disordered region (IsUnstruct)
**LRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLL*************************************DGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGG****RPYRGGFIFEKIIGPVSTGHLELRT*******SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP******TSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRIL*******
Disordered Region (DISOPRED)
***RC*RLSFVATLATFLFFHDFCACQKA*************KPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRI*SER****
Disordered Region (DISEMBL)
MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN
Disordered Region (DISPRO)
*DLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	539	2.2.26 [Sep-21-2011]
Q9S746	594	Protein HOTHEAD OS=Arabid	no	no	0.907	0.823	0.533	1e-161
Q9SSM2	552	(R)-mandelonitrile lyase-	no	no	0.920	0.898	0.495	1e-134
P52706	563	(R)-mandelonitrile lyase	N/A	no	0.935	0.895	0.424	1e-113
Q945K2	563	(R)-mandelonitrile lyase	N/A	no	0.961	0.920	0.420	1e-112
O50048	576	(R)-mandelonitrile lyase	N/A	no	0.931	0.871	0.425	1e-110
P52707	573	(R)-mandelonitrile lyase	N/A	no	0.935	0.879	0.412	1e-109
O82784	574	(R)-mandelonitrile lyase	N/A	no	0.959	0.900	0.406	1e-105
O24243	559	(R)-mandelonitrile lyase	N/A	no	0.923	0.890	0.412	1e-104
Q47944	531	L-sorbose 1-dehydrogenase	yes	no	0.808	0.821	0.279	2e-30
Q00593	558	Alcohol dehydrogenase [ac	N/A	no	0.825	0.797	0.273	5e-28

>sp|Q9S746|HTH_ARATH Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1

 Score =  568 bits (1463), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 285/534 (53%), Positives = 361/534 (67%), Gaps = 45/534 (8%)

Query: 46  SYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSP 105
           S YDYIVIGGGTAGCPLAA+LSQN SVL+LERG  P+ N N++   +F   LAD+S +S 
Sbjct: 61  SSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSA 120

Query: 106 SQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVF 165
           SQ F+S DGV + RARVLGGG+CINAGFY+RA+  + + AGWD +LV ESY WVE+++V 
Sbjct: 121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180

Query: 166 RPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPS 225
           +P +  WQ ALRD L+EVGV P+NGFTYDH+ GTKIGGTI D+  +RHTAA+LL YANP 
Sbjct: 181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240

Query: 226 GLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP 285
            L VL++A+V KI+F   G  RP   GV+F+D    +H A L N   +E+I+S+GA+GSP
Sbjct: 241 KLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSP 299

Query: 286 QLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ 345
           Q+LMLSG+GP   L+   I VVL+   VG+GM+DNPMN I VPS  P+E SLIQ VGIT+
Sbjct: 300 QMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITK 359

Query: 346 FGSYIEGASGVNFAGGSPSP-----------------------RP--------------- 367
            G Y+E ++G    G SP                         RP               
Sbjct: 360 MGVYVEASTGF---GQSPESIHTHYGIMSNKNELFSTIPAKQRRPEATQAYITRNKYQLH 416

Query: 368 --YRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIE 425
             + G FI EK+  P+S GHL L   N +D PSVTFNYFK P DLQRCV+ I  + K++ 
Sbjct: 417 EAFNGSFILEKLAYPISRGHLSLVNTNVDDNPSVTFNYFKHPVDLQRCVEAIRLVSKVVT 476

Query: 426 SKSFSKF-KYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQV 484
           S  F  + + D  +V  +L+++    +NL PK  N + S+ QFC+DTV+TIWHYHGGC V
Sbjct: 477 SNRFLNYTQCDKQNVHKMLSLSVKANINLRPKQLNDTKSMAQFCKDTVVTIWHYHGGCLV 536

Query: 485 GKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
           GKVV  + KVLGVD LRV+DGSTF  SPGTNPQAT+MM+GRYMGV+IL ERL +
Sbjct: 537 GKVVSPNRKVLGVDRLRVIDGSTFDESPGTNPQATMMMMGRYMGVKILRERLGN 590

Probable FAD-dependent enzyme. Involved in regulating post-genital organ fusion. Required to limit cellular interactions between contacting epidermal cells during floral development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSM2|MDLL_ARATH (R)-mandelonitrile lyase-like OS=Arabidopsis thaliana GN=At1g73050 PE=2 SV=1

 Score =  480 bits (1235), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 256/517 (49%), Positives = 334/517 (64%), Gaps = 21/517 (4%)

Query: 35  FMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFS 94
           F+ NAT      YYDYI++GGGTAGCPLAA+LSQ+  VLLLERG  PY  PN+ +   F 
Sbjct: 41  FISNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFL 100

Query: 95  AELADLSP-TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAG--WDGRL 151
             L D++   SP+Q FISE+GV + R RVLGG + INAGFY+RA+  +   +G  WD   
Sbjct: 101 TTLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSS 160

Query: 152 VNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQ 211
           VN+SY+WVE+ +VFRP ++ WQ+A+RD L+EVGV P+NGFT +H  GTKIGG+  D+  +
Sbjct: 161 VNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGR 220

Query: 212 RHTAADLLEYANPSGLTVLLHASVHKILFRNK---GKARPVAHGVVFRDATDAEHIAYLR 268
           RH++ADLL YA  S + V ++A+V ++L  +      +   A GVV+RD     H A +R
Sbjct: 221 RHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHALIR 280

Query: 269 NGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVP 328
           +  + E+I+SAGALGSPQLL LSG+GP  +L    I V LDQP VG  + DNP N I + 
Sbjct: 281 D--RGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGISIV 338

Query: 329 SPVPVEVSLIQVVGITQFGSYIEGASGV---------NFAGGSPSPRPYRGGFIFEKIIG 379
            PVP+E SLIQVVG+T+ G+++E AS V          F     SP       I EKI+G
Sbjct: 339 PPVPMENSLIQVVGVTEDGAFLEAASNVIPFASPLHSVFIRAPASPLYVPVTTIMEKILG 398

Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSV 439
           PVS G L L + +    P V FNYF +P+DL+RCV G   I +I+ S++   F    M  
Sbjct: 399 PVSIGLLRLASTDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILRSRAMQDF----MIR 454

Query: 440 ETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDA 499
           E   N         LP   +    +  FCR TV TIWHYHGG  VGKVVD D KV+GV++
Sbjct: 455 EWFGNRRFRFVGAPLPVDQSNDLVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNS 514

Query: 500 LRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 536
           LR+VDGSTF  SPGTNPQAT+MMLGRYMG+++L ER+
Sbjct: 515 LRLVDGSTFNISPGTNPQATLMMLGRYMGLKMLRERM 551

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P52706|MDL1_PRUSE (R)-mandelonitrile lyase 1 OS=Prunus serotina GN=MDL1 PE=1 SV=1

 Score =  410 bits (1053), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/530 (42%), Positives = 315/530 (59%), Gaps = 26/530 (4%)

Query: 21  HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
           HDF   +       F  +AT  +    YDY+++GGGT+GCPLAA+LS+   VL+LERG  
Sbjct: 34  HDFSYLR-------FAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 86

Query: 81  PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
           P   PN+  +  F   L  +    +P +RF+SEDG+ + R RVLGG + INAG Y RA  
Sbjct: 87  PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYARANT 146

Query: 140 --YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
             Y A    WD  LVN++Y+WVE  +VF+P  Q WQS      +E GV P +GF+ DH  
Sbjct: 147 SIYSASGVDWDMDLVNKTYEWVEDTIVFKPNYQPWQSVTGTAFLEAGVDPNHGFSLDHEA 206

Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
           GT+I G+  D    RH A +LL   N + L V +HASV KI+F N       A GV++RD
Sbjct: 207 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGL--TATGVIYRD 264

Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
           +    H A++R+  K E+IVSAG +G+PQLL+LSGVGP  +L + NI VVL  P VGQ +
Sbjct: 265 SNGTPHRAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 322

Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGVNFAGGSPSPRPYRGG 371
            DNP N I +  P P+E +++ V+GI+       F S        +F   +  P P    
Sbjct: 323 HDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFSFFPSTSYPLPNSTF 382

Query: 372 FIF-EKIIGPVSTGHLELRTR-NPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSF 429
             F  K+ GP+S G L L++  N   +P+V FNY+  P DL  CV G+  I +++ + + 
Sbjct: 383 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNPTDLSHCVSGMKKIGELLSTDAL 442

Query: 430 SKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVD 489
             +K +++      N+   +PL   PK      + E FCR++V + WHYHGGC VGKV+D
Sbjct: 443 KPYKVEDLPGIEGFNILG-IPL---PKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 498

Query: 490 HDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 539
            D++V G+DALRVVDGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct: 499 GDFRVTGIDALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 548

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|Q945K2|MDL2_PRUDU (R)-mandelonitrile lyase 2 OS=Prunus dulcis GN=MDL2 PE=1 SV=1

 Score =  407 bits (1045), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/545 (42%), Positives = 322/545 (59%), Gaps = 27/545 (4%)

Query: 6   LRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAAS 65
           L+ S V +LAT    HDF          SF  +AT  +    YDY+++GGGT+GCPLAA+
Sbjct: 20  LQYSEVHSLAT-TSDHDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAAT 71

Query: 66  LSQNASVLLLERGDSPYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLG 124
           LS+   VL+LERG  P   PN+  +  F   L  +    +P +RF+SEDG+ + R RVLG
Sbjct: 72  LSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLG 131

Query: 125 GGTCINAGFYTRAEP--YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVE 182
           G + INAG Y RA    Y A    WD  LVN++Y+WVE  +V++P  Q WQS  +   +E
Sbjct: 132 GTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLE 191

Query: 183 VGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRN 242
            GV P +GF+ DH  GT+I G+  D    RH A +LL   N + L V +HASV KI+F N
Sbjct: 192 AGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSN 251

Query: 243 KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAH 302
                  A GV++RD+    H A++R+  K E+IVSAG +G+PQLL+LSGVGP  +L + 
Sbjct: 252 APGL--TATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSL 307

Query: 303 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGV 356
           NI VVL  P VGQ + DNP N I +  P P+E +++ V+GI+       F S        
Sbjct: 308 NIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPF 367

Query: 357 NFAGGSPSPRPYRGGFIF-EKIIGPVSTGHLELRTR-NPNDTPSVTFNYFKEPEDLQRCV 414
            F   +  P P      F  K+ GP+S G L L++  N   +P+V FNY+    DL  CV
Sbjct: 368 GFFPSASYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCV 427

Query: 415 QGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMT 474
            G+  I +++ + +   +K +++      N+   +PL   PK      + E FCR++V +
Sbjct: 428 SGMKKIGELLSTDALKPYKVEDLPGVEGFNILG-IPL---PKDQTDDAAFETFCRESVAS 483

Query: 475 IWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534
            WHYHGGC VGKV+D D++V G++ALRVVDGSTF Y+P ++PQ   +MLGRY+G++IL E
Sbjct: 484 YWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQE 543

Query: 535 RLASN 539
           R AS+
Sbjct: 544 RSASD 548

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. Has no oxidase activity. The redox properties of the FAD cofactor appear to be unimportant for catalysis.

Prunus dulcis (taxid: 3755)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O50048|MDL2_PRUSE (R)-mandelonitrile lyase 2 OS=Prunus serotina GN=MDL2 PE=2 SV=1

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/531 (42%), Positives = 313/531 (58%), Gaps = 29/531 (5%)

Query: 21  HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
           HDF   +       F+ +A   +    YDYI++GGGTAGCPLAA+LS N SVL+LERG  
Sbjct: 35  HDFSYLE-------FVYDANDTELEGTYDYIIVGGGTAGCPLAATLSANYSVLVLERGTL 87

Query: 81  PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
           P   PN+  S  F   L  +    +P +RF+S DG+ + R RVLGG + INAG Y RA  
Sbjct: 88  PTEYPNLLTSDGFIYNLQQEDDGQTPVERFVSGDGIDNVRGRVLGGTSMINAGVYVRANT 147

Query: 140 YYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
            +  + G  WD  LVN++Y WVE  +VF+P  Q WQ+      +EVG+LP NGF+ DHL 
Sbjct: 148 SFFNQTGIEWDMDLVNKTYDWVEDTIVFKPDFQFWQNLTGTAFLEVGILPDNGFSLDHLE 207

Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
           GT++ G+  D N  RH + +LL   +P+ L V +HA+V KI+F +       A GV++ D
Sbjct: 208 GTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVHAAVEKIIFSSDSSGV-TAIGVIYTD 266

Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
           +    H A++R     E+I+SAG +GSPQLL+LSGVG   +L + NI+VV   P VGQ +
Sbjct: 267 SNGTTHQAFVRG--DGEVILSAGPIGSPQLLLLSGVGLESYLTSLNISVVASHPYVGQYI 324

Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFA----GGSPSPR-PYRG-- 370
            DNP N I +  P P+E S + V+GIT    Y    S + F+    G  P+P  P     
Sbjct: 325 YDNPRNFINILPPNPIEASTVTVLGITS-DFYQCSISSLPFSTAPFGFFPNPTYPLPNTT 383

Query: 371 -GFIFEKIIGPVSTGHLELR-TRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKS 428
              I  K+ GP+S G + L+ T +    P+VTFNY+    DL  CV G+  I + + S +
Sbjct: 384 FAHIVNKVPGPLSHGTVLLQSTSDVRVAPNVTFNYYSNTTDLAHCVSGMKKIGEFLSSDA 443

Query: 429 FSKFKYDNMSVETLLNMTASMPLNL-LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV 487
              +K     VE L  +     L + LP++     + E FCR+ V + WHYHGGC VG+V
Sbjct: 444 LKPYK-----VEDLPGIEGFDILGIPLPENQTDDAAFETFCREAVASYWHYHGGCLVGEV 498

Query: 488 VDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
           +D D++V G++ALRVVDGSTF  +P ++PQ   +MLGRYMG +IL ERLAS
Sbjct: 499 LDDDFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGTKILQERLAS 549

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|P52707|MDL3_PRUSE (R)-mandelonitrile lyase 3 OS=Prunus serotina GN=MDL3 PE=2 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/529 (41%), Positives = 313/529 (59%), Gaps = 25/529 (4%)

Query: 21  HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
           HDF          SF+ +AT  +    YDYI++GGGTAGCPLAA+LS N SVL+LERG  
Sbjct: 34  HDFSYL-------SFVYDATDPELEGSYDYIIVGGGTAGCPLAATLSANYSVLVLERGSL 86

Query: 81  PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
           P   PN+  S  F   L  +    +P +RF+SEDG+ + R RVLGG + INAG Y RA  
Sbjct: 87  PTEYPNLLISDGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSMINAGVYVRANT 146

Query: 140 YYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
            +  + G  WD  LVN++Y+WVE  +VF P  Q WQ+ +    +E G+LP NGF+ DHL 
Sbjct: 147 SFFNQTGIEWDMDLVNQTYEWVEDTIVFEPDSQTWQTVIGTAYLEAGILPNNGFSVDHLA 206

Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
           GT++ G+  D N  RH + +LL   +P+ L V + A+V KI+F +       A GV++ D
Sbjct: 207 GTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVQAAVEKIIFSSNTSGV-TAIGVIYTD 265

Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
           +    H A++R   + E+I+SAG +GSPQLL+LSGVGP  +L + NI+VV   P VGQ +
Sbjct: 266 SNGTTHQAFVRG--EGEVILSAGPIGSPQLLLLSGVGPESYLTSLNISVVASHPYVGQYI 323

Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGVNFAGGSPSPRPYRG- 370
            DNP N I +  P P+E S + V+GIT         S        +F   +  P P +  
Sbjct: 324 YDNPRNFINILPPNPIEASTVTVLGITSDFYQCSISSLPFDTPPFSFFPTTSYPLPNQTF 383

Query: 371 GFIFEKIIGPVSTGHLELRTRNPNDT-PSVTFNYFKEPEDLQRCVQGISTIEKIIESKSF 429
             I  K+ GP+S G + L + +     P+V FNY+    DL  CV G+  + +++ + + 
Sbjct: 384 AHIVNKVPGPLSHGTVTLNSSSDVRVGPNVKFNYYSNLTDLSHCVSGMKKLGEVLSTDAL 443

Query: 430 SKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVD 489
             +K +++      N+   +PL   P++     + E FCR++V + WHYHGGC VGKV+D
Sbjct: 444 EPYKVEDLPGIDGFNILG-IPL---PENQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 499

Query: 490 HDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
             ++V G++ALRVVDGSTF  +P ++PQ   +MLGRYMG++IL ER AS
Sbjct: 500 DGFRVTGINALRVVDGSTFPSTPASHPQGFYLMLGRYMGIQILQERSAS 548

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O82784|MDL4_PRUSE (R)-mandelonitrile lyase 4 OS=Prunus serotina GN=MDL4 PE=2 SV=1

 Score =  382 bits (981), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/544 (40%), Positives = 311/544 (57%), Gaps = 27/544 (4%)

Query: 7   RLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASL 66
           + S V +LA     HDF   +       F+ NA   +    YDYI++GGGT+GCPLAA+L
Sbjct: 21  QYSEVHSLANTSSEHDFGYLK-------FVYNAVDLELEGSYDYIIVGGGTSGCPLAATL 73

Query: 67  SQNASVLLLERGDSPYGNPNITNSGSFSAELADLSP-TSPSQRFISEDGVVSTRARVLGG 125
           S N SVL+LERG      PN      F+  L       +P +RF+SEDG+ + R+R+LGG
Sbjct: 74  SANYSVLVLERGTIATEYPNTLTVDGFAYNLQQQDDGKTPVERFVSEDGIDNVRSRILGG 133

Query: 126 GTCINAGFYTRAEPYYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEV 183
            T INAG Y RA   +   +G  WD  LVNE+Y+WVE  +V++P  Q WQS      +E 
Sbjct: 134 TTIINAGVYARANESFYNNSGVEWDLDLVNEAYEWVEDAIVYKPSNQSWQSITGTAFLEA 193

Query: 184 GVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNK 243
           GV P NGF   H  GT++ G+  D +  RH + +LL   +P  L V + A+V KI+F  +
Sbjct: 194 GVHPDNGFGLVHEEGTRLTGSTFDNSGTRHASDELLNKGDPDNLKVAVEAAVQKIIFSTE 253

Query: 244 GKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHN 303
                 A GVV+ D+    H A +    K E+I+SAG LG+PQLL+LSGVGP  +L + N
Sbjct: 254 SSGL-TAVGVVYTDSNGTSHRALVSG--KGEVILSAGTLGTPQLLLLSGVGPESYLTSLN 310

Query: 304 ITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAG--- 360
           I+VV   P VGQ ++DNP N I +  P P+E S + V+GIT    Y    S + F     
Sbjct: 311 ISVVASHPYVGQYVNDNPRNFINILPPNPIEPSTVTVLGITS-DFYQCSLSSLPFDTPPF 369

Query: 361 ----GSPSPRPYRG-GFIFEKIIGPVSTGHLELRTR-NPNDTPSVTFNYFKEPEDLQRCV 414
                +  P P +    I  K+ GP+S G L L++  N +  P+V FNY  +P DL  CV
Sbjct: 370 SLFPTTSYPLPNQTFAHIVSKVPGPLSAGSLTLQSSSNVSVAPNVKFNYCSDPVDLTHCV 429

Query: 415 QGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMT 474
            G+  I   + + +   +K D++      N+  +     LP++     + E+FCRDTV +
Sbjct: 430 SGMKKIGVFLSTDALKPYKVDDLPGIDGFNILGTP----LPENQTDDAAFEKFCRDTVAS 485

Query: 475 IWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534
            WHYHGG  VGKV+D +++V G++ALRVVDGSTF  +P ++PQ   +MLGRY+G +I+ E
Sbjct: 486 YWHYHGGAIVGKVIDGNFRVTGINALRVVDGSTFPATPASHPQGFYLMLGRYVGTKIVQE 545

Query: 535 RLAS 538
           R AS
Sbjct: 546 RSAS 549

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus serotina (taxid: 23207)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|O24243|MDL1_PRUDU (R)-mandelonitrile lyase 1 OS=Prunus dulcis GN=MDL1 PE=2 SV=1

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/529 (41%), Positives = 305/529 (57%), Gaps = 31/529 (5%)

Query: 21  HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
           HDF   +       F+ NAT       YDYIVIGGGT+GCPLAA+LS+   VLLLERG  
Sbjct: 34  HDFSYLK-------FVYNATDTSLEGSYDYIVIGGGTSGCPLAATLSEKYKVLLLERGTI 86

Query: 81  PYGNPNITNSGSFSAELADLSP-TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
               PN   +  F+  L       +P +RF+SEDG+ + RAR+LGG T INAG Y RA  
Sbjct: 87  ATEYPNTLTADGFAYNLQQQDDGKTPVERFVSEDGIDNVRARILGGTTIINAGVYARANI 146

Query: 140 YYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
            +  + G  WD  LVN++Y+WVE  +V +P  Q WQS + +G +E G+LP NGF+ DH  
Sbjct: 147 SFYSQTGIEWDLDLVNKTYEWVEDAIVVKPNNQSWQSVIGEGFLEAGILPDNGFSLDHEA 206

Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
           GT++ G+  D N  RH A +LL   +P+ L V + ASV KILF +   +   A GV++ D
Sbjct: 207 GTRLTGSTFDNNGTRHAADELLNKGDPNNLLVAVQASVEKILFSSN-TSNLSAIGVIYTD 265

Query: 258 ATDAEHIAYLR-NGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
           +    H A++R NG   E+IVSAG +G+PQLL+LSGVGP  +L + NITVV   P VGQ 
Sbjct: 266 SDGNSHQAFVRGNG---EVIVSAGTIGTPQLLLLSGVGPESYLSSLNITVVQPNPYVGQF 322

Query: 317 MSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRG------ 370
           + +NP N I    P P+E S++ V+GI +   Y    S + F+    S  P         
Sbjct: 323 LYNNPRNFINNFPPNPIEASVVTVLGI-RSDYYQVSLSSLPFSTPPFSLFPTTSYPLPNS 381

Query: 371 --GFIFEKIIGPVSTGHLELRTRNP-NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESK 427
               I  ++ GP+S G + L + +     P++ FNY+    DL  CV G+  +  ++ +K
Sbjct: 382 TFAHIVSQVPGPLSHGSVTLNSSSDVRIAPNIKFNYYSNSTDLANCVSGMKKLGDLLRTK 441

Query: 428 SFSKFKYDNMSVETLLNMTASMPLNL-LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK 486
           +   +K        +L +     L + LP++     S E FC D V + WHYHGG  VGK
Sbjct: 442 ALEPYK-----ARDVLGIDGFNYLGVPLPENQTDDASFETFCLDNVASYWHYHGGSLVGK 496

Query: 487 VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535
           V+D  ++V+G+ ALRVVD STF Y P ++PQ   +MLGRY+G++IL ER
Sbjct: 497 VLDDSFRVMGIKALRVVDASTFPYEPNSHPQGFYLMLGRYVGLQILQER 545

Involved in cyanogenesis, the release of HCN from injured tissues. Catalyzes the stereospecific addition of HCN to a variety of aldehydes in vitro. It is a major seed constituent, and could have the additional role of a storage form for reduced nitrogen.

Prunus dulcis (taxid: 3755)

EC: 4

EC: .

EC: 1

EC: .

EC: 2

EC: .

EC: 1

EC: 0

>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 157/561 (27%), Positives = 234/561 (41%), Gaps = 125/561 (22%)

Query: 45  VSYYDYIVIGGGTAGCPLAASLSQNASV--LLLERGDS--------PYGNPNITNSGSFS 94
            S +DYIV+GGG+AGC LAA LS+N SV   L+E G          P G   +T +G  +
Sbjct: 2   TSGFDYIVVGGGSAGCVLAARLSENPSVRVCLIEAGRRDTHPLIHMPVGFAKMT-TGPHT 60

Query: 95  AELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREA--GWD 148
            +L     T P Q+  +   +   + R+LGGG+ INA  +TR  P     +A E   GW 
Sbjct: 61  WDLL----TEP-QKHANNRQIPYVQGRILGGGSSINAEVFTRGHPSDFDRWAAEGADGWS 115

Query: 149 GRLVNESYQWVEKKVVFR------------------PPMQRWQSALRDGLVEVGVLPYN- 189
            R V + +   E   VF                    P  R   A      E+G LPYN 
Sbjct: 116 FRDVQKYFIRSEGNAVFSGTWHGTNGPLGVSNLAEPNPTSR---AFVQSCQEMG-LPYNP 171

Query: 190 GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYA-NPSGLTVLLHASVHKILFRNKGKARP 248
            F      G  I    I  N +  TA   L  A     LTV+  A V KI+F        
Sbjct: 172 DFNGASQEGAGIYQMTIRNNRRCSTAVGYLRPALGRKNLTVVTRALVLKIVF-------- 223

Query: 249 VAHGVVFRDATDAEHIAYLRNGPKN------EIIVSAGALGSPQLLMLSGVGPADHLKAH 302
                   + T A  + Y+ NG  N      EI+V+AGA+G+P+L+MLSGVGPA HL+ +
Sbjct: 224 --------NGTRATGVQYIANGTLNTAEASQEIVVTAGAIGTPKLMMLSGVGPAAHLREN 275

Query: 303 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGI----------TQFGS---- 348
            I VV D P VG+ + D+    + + + +  + S  +   +          T F S    
Sbjct: 276 GIPVVQDLPGVGENLQDH--FGVDIVAELKTDESFDKYRKLHWMLWAGLEYTMFRSGPVA 333

Query: 349 ----------YIEGASGV-----NF-------AGGSPSPRPYRGGFIFEKIIGPVSTGHL 386
                     Y + +SGV     +F       AG +  P+   G  +   ++ P S G +
Sbjct: 334 SNVVEGGAFWYSDPSSGVPDLQFHFLAEAGAEAGVTSVPKGASGITLNSYVLRPKSRGTV 393

Query: 387 ELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMT 446
            LR+ +P   P V  N+  +P DL+   +G+    ++    S  K       +      +
Sbjct: 394 RLRSADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEKH------IRKTCFFS 447

Query: 447 ASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRV 502
              P         T      + R+   T +H    C++G+    VVD   KV G++ +R+
Sbjct: 448 GKQP---------TMQMYRDYAREHGRTSYHPTCTCKMGRDDMSVVDPRLKVHGLEGIRI 498

Query: 503 VDGSTFYYSPGTNPQATVMML 523
            D S      G+N  A  +M+
Sbjct: 499 CDSSVMPSLLGSNTNAATIMI 519

Gluconobacter oxydans (taxid: 442)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 3

EC: 2

>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1

 Score =  126 bits (316), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 234/549 (42%), Gaps = 104/549 (18%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNAS--VLLLERG--------DSPYGNPNITNSGSFSAEL 97
           YDYI++G G+AGC LA  LS + S  V LLE G          P G   ++NS   +   
Sbjct: 2   YDYIIVGAGSAGCVLANRLSADPSKRVCLLEAGPRDTNPLIHMPLGIALLSNSKKLNWAF 61

Query: 98  ADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA--EPYYAREAG----WDGRL 151
                T+P Q  ++   +   R + LGG + INA  Y R   + Y+A E      W    
Sbjct: 62  Q----TAPQQN-LNGRSLFWPRGKTLGGSSSINAMVYIRGHEDDYHAWEQAAGRYWGWYR 116

Query: 152 VNESYQWVEKKVVFRPPMQ------------RWQSALRDGLVEVGV---LPYNGFTYDHL 196
             E ++ +E    F                 ++ + L    V+ G+   + +NG  ++  
Sbjct: 117 ALELFKRLECNQRFDKSEHHGVDGELAVSDLKYINPLSKAFVQAGMEANINFNG-DFNGE 175

Query: 197 YGTKIGG-TIIDQNSQRHTAADLLEYANPS--GLTVLLHASVHKILFRNKGKARPVAHGV 253
           Y   +G   +  +N QR ++A    +   S   L ++  A   KILF ++      A GV
Sbjct: 176 YQDGVGFYQVTQKNGQRWSSARAFLHGVLSRPNLDIITDAHASKILFEDRK-----AVGV 230

Query: 254 VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLV 313
            +        +     G   E+++S GA+G+P LLMLSGVG A  LK H +++V D P V
Sbjct: 231 SYIKKNMHHQVKTTSGG---EVLLSLGAVGTPHLLMLSGVGAAAELKEHGVSLVHDLPEV 287

Query: 314 GQGMSDN----PMNAIFVPSPVPVEVSLIQVVGITQFGSYI---EG--ASGVNFAGG--S 362
           G+ + D+     M A     P+ V +S I   G++   SY+   EG   S V  +GG   
Sbjct: 288 GKNLQDHLDITLMCAANSREPIGVALSFIP-RGVSGLFSYVFKREGFLTSNVAESGGFVK 346

Query: 363 PSPRPYRGGFIF-----------EKIIG------------PVSTGHLELRTRNPNDTPSV 399
            SP   R    F            KI G            P S G + L++ NP   P +
Sbjct: 347 SSPDRDRPNLQFHFLPTYLKDHGRKIAGGYGYTLHICDLLPKSRGRIGLKSANPLQPPLI 406

Query: 400 TFNYFKEPEDLQRCVQGISTIEKIIESKSFSK-FKYDNMSVETLLNMTASMPLNLLPKHS 458
             NY  + ED++  + GI     I+++ S +K FK++ +  + +                
Sbjct: 407 DPNYLSDHEDIKTMIAGIKIGRAILQAPSMAKHFKHEVVPGQAV---------------- 450

Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFYYSPGT 514
            T   + +  R    TI+H  G C++GK    VVD   K+ G+  +RVVD S   +    
Sbjct: 451 KTDDEIIEDIRRRAETIYHPVGTCRMGKDPASVVDPCLKIRGLANIRVVDASIMPHLVAG 510

Query: 515 NPQATVMML 523
           N  A  +M+
Sbjct: 511 NTNAPTIMI 519

Converts aliphatic medium-chain-length alcohols into aldehydes. May be linked to the electron transfer chain.

Pseudomonas oleovorans (taxid: 301)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
359474262	568	PREDICTED: protein HOTHEAD isoform 2 [Vi	0.998	0.947	0.706	0.0
356514078	581	PREDICTED: protein HOTHEAD-like [Glycine	0.975	0.905	0.710	0.0
359474260	578	PREDICTED: protein HOTHEAD isoform 1 [Vi	0.998	0.930	0.694	0.0
356563226	581	PREDICTED: protein HOTHEAD-like [Glycine	0.975	0.905	0.712	0.0
224053991	577	predicted protein [Populus trichocarpa]	0.975	0.911	0.718	0.0
449495903	580	PREDICTED: protein HOTHEAD-like [Cucumis	0.974	0.905	0.676	0.0
449452496	578	PREDICTED: protein HOTHEAD-like [Cucumis	0.974	0.908	0.676	0.0
357481759	580	Choline dehydrogenase [Medicago truncatu	0.974	0.905	0.666	0.0
357481761	580	Choline dehydrogenase [Medicago truncatu	0.940	0.874	0.678	0.0
255537255	548	glucose-methanol-choline (gmc) oxidoredu	0.927	0.912	0.664	0.0

>gi|359474262|ref|XP_003631426.1| PREDICTED: protein HOTHEAD isoform 2 [Vitis vinifera]

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/566 (70%), Positives = 459/566 (81%), Gaps = 28/566 (4%)

Query: 1   MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGC 60
           M +   R    A     +FFH FC+ +KA PNYSFM  AT+A  +SYYDYI++GGGTAGC
Sbjct: 1   MGVGLWRFILAAFAGVLVFFHGFCSSEKA-PNYSFMHQATSAPAISYYDYIIVGGGTAGC 59

Query: 61  PLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRA 120
           PLAA+LSQN SVLLLERG +PYGNPNITN GSF A  +D SPTSPSQRF+SEDGV++ RA
Sbjct: 60  PLAATLSQNYSVLLLERGGAPYGNPNITNLGSFGAPFSDFSPTSPSQRFVSEDGVINARA 119

Query: 121 RVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGL 180
           RVLGGG+C+NAGFYTRA P Y  E GWD  +V ESY+WVEK V F+PPM++WQSA+RDGL
Sbjct: 120 RVLGGGSCLNAGFYTRAGPDYVEEVGWDSGMVKESYEWVEKVVAFKPPMRQWQSAVRDGL 179

Query: 181 VEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILF 240
           +EVGVLPYNGFTYDH+YGTKIGGTI D +  RHTAADLL+YANP+GLTVLLHA+VHKI F
Sbjct: 180 LEVGVLPYNGFTYDHIYGTKIGGTIFDPDGHRHTAADLLQYANPTGLTVLLHATVHKITF 239

Query: 241 RNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLK 300
           R +GK RPVAHGV+FRD    +H AYL+   KNEIIVS+GALGSPQLLMLSGVGPA  +K
Sbjct: 240 RRRGKVRPVAHGVIFRDVLGKKHKAYLKRDSKNEIIVSSGALGSPQLLMLSGVGPAQQIK 299

Query: 301 AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAG 360
           AHNI++VLD P+VGQ MSDNPMNAIF+PSP+PVEVSLIQVVGIT  G+YIE ASG NFA 
Sbjct: 300 AHNISLVLDLPMVGQRMSDNPMNAIFIPSPLPVEVSLIQVVGITHSGTYIEAASGENFAA 359

Query: 361 GSP-------SPR--------------------PYRGGFIFEKIIGPVSTGHLELRTRNP 393
             P       SP+                     +RGGFI EKI+GP+STGHLEL++RNP
Sbjct: 360 SGPQRDFGMFSPKQRTPEAIAKAIDSMSKLDETAFRGGFILEKIMGPISTGHLELQSRNP 419

Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
           ND PSVTFNYFKEPEDLQRCV G+  IEKIIESK+FS+FKYD +SV  L+NMT + P+NL
Sbjct: 420 NDNPSVTFNYFKEPEDLQRCVNGMQIIEKIIESKAFSQFKYDYLSVPALINMTLNFPVNL 479

Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPG 513
           +P+H N STSLEQFC+DTVMTIWHYHGGCQVG VVDHDYKVLGVDALRV+DGSTF  SPG
Sbjct: 480 VPRHDNASTSLEQFCKDTVMTIWHYHGGCQVGSVVDHDYKVLGVDALRVIDGSTFNASPG 539

Query: 514 TNPQATVMMLGRYMGVRILSERLASN 539
           TNPQATVMMLGRYMG+RILSERLAS+
Sbjct: 540 TNPQATVMMLGRYMGLRILSERLASD 565

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514078|ref|XP_003525734.1| PREDICTED: protein HOTHEAD-like [Glycine max]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/563 (71%), Positives = 463/563 (82%), Gaps = 37/563 (6%)

Query: 10  FVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQN 69
           FVA LA  LF    CA QK  PNY+FM NAT A  VSYYDYIVIGGGTAGCPLAA+LSQN
Sbjct: 9   FVAALAGILFSTQHCASQKV-PNYTFMHNATTAPDVSYYDYIVIGGGTAGCPLAATLSQN 67

Query: 70  ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCI 129
            SVLLLERG SPYGNPNI++  +F A L+D SPTSP+QRFISEDGV+++RARVLGGG+C+
Sbjct: 68  YSVLLLERGGSPYGNPNISDLAAFGAALSDTSPTSPAQRFISEDGVINSRARVLGGGSCL 127

Query: 130 NAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYN 189
           NAGFYTRA P Y REAGWDGR+VNESY+WVEK V F P +++WQS++RDGL+E+GV+P N
Sbjct: 128 NAGFYTRASPQYVREAGWDGRVVNESYEWVEKIVAFEPQLKQWQSSVRDGLIEIGVVPNN 187

Query: 190 GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPV 249
           GFTYDH+ GTK+GGTI DQN  RHTAADLL+YA P+G+T+LL A+VH+ILFR K +++P+
Sbjct: 188 GFTYDHIDGTKVGGTIFDQNGFRHTAADLLQYAKPTGITLLLDATVHRILFRVKDRSKPM 247

Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
           AHGVVFRD+    H AYL+  P+NEIIVSAGALGSPQLLMLSG+GP +HLKAHNI + LD
Sbjct: 248 AHGVVFRDSLGRRHKAYLKPDPRNEIIVSAGALGSPQLLMLSGIGPEEHLKAHNIRITLD 307

Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSP------ 363
           QPLVGQGMSDNPMNAIFVPSPVPVE+SLI+VVGIT FG+YIE ASG NFAGGSP      
Sbjct: 308 QPLVGQGMSDNPMNAIFVPSPVPVEISLIEVVGITTFGTYIEAASGENFAGGSPKDYGMF 367

Query: 364 SPR------------------------------PYRGGFIFEKIIGPVSTGHLELRTRNP 393
           SP+                               +RGGFI EKI+GP+S+GHLELR+R+P
Sbjct: 368 SPKIGQLSTVPPKQRTPEALAKAIEVMETLDQAAFRGGFILEKIMGPISSGHLELRSRDP 427

Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
           ND PSVTFNYF++P DLQRCVQG+ST+EKIIESK+FS F+Y NM V  LLNMTAS P+NL
Sbjct: 428 NDNPSVTFNYFQDPRDLQRCVQGLSTVEKIIESKAFSPFRYPNMPVPVLLNMTASAPVNL 487

Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPG 513
           LPKH+N+S SLEQ+C+DTVMTIWHYHGGCQV KVVD DYKVLGVDALRV+DGSTF YSPG
Sbjct: 488 LPKHTNSSLSLEQYCKDTVMTIWHYHGGCQVAKVVDRDYKVLGVDALRVIDGSTFNYSPG 547

Query: 514 TNPQATVMMLGRYMGVRILSERL 536
           TNPQATVMMLGRYMGV+ILSERL
Sbjct: 548 TNPQATVMMLGRYMGVKILSERL 570

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474260|ref|XP_002282510.2| PREDICTED: protein HOTHEAD isoform 1 [Vitis vinifera] gi|297742610|emb|CBI34759.3| unnamed protein product [Vitis vinifera]

 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/576 (69%), Positives = 459/576 (79%), Gaps = 38/576 (6%)

Query: 1   MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGC 60
           M +   R    A     +FFH FC+ +KA PNYSFM  AT+A  +SYYDYI++GGGTAGC
Sbjct: 1   MGVGLWRFILAAFAGVLVFFHGFCSSEKA-PNYSFMHQATSAPAISYYDYIIVGGGTAGC 59

Query: 61  PLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRA 120
           PLAA+LSQN SVLLLERG +PYGNPNITN GSF A  +D SPTSPSQRF+SEDGV++ RA
Sbjct: 60  PLAATLSQNYSVLLLERGGAPYGNPNITNLGSFGAPFSDFSPTSPSQRFVSEDGVINARA 119

Query: 121 RVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGL 180
           RVLGGG+C+NAGFYTRA P Y  E GWD  +V ESY+WVEK V F+PPM++WQSA+RDGL
Sbjct: 120 RVLGGGSCLNAGFYTRAGPDYVEEVGWDSGMVKESYEWVEKVVAFKPPMRQWQSAVRDGL 179

Query: 181 VEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILF 240
           +EVGVLPYNGFTYDH+YGTKIGGTI D +  RHTAADLL+YANP+GLTVLLHA+VHKI F
Sbjct: 180 LEVGVLPYNGFTYDHIYGTKIGGTIFDPDGHRHTAADLLQYANPTGLTVLLHATVHKITF 239

Query: 241 RNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLK 300
           R +GK RPVAHGV+FRD    +H AYL+   KNEIIVS+GALGSPQLLMLSGVGPA  +K
Sbjct: 240 RRRGKVRPVAHGVIFRDVLGKKHKAYLKRDSKNEIIVSSGALGSPQLLMLSGVGPAQQIK 299

Query: 301 AHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAG 360
           AHNI++VLD P+VGQ MSDNPMNAIF+PSP+PVEVSLIQVVGIT  G+YIE ASG NFA 
Sbjct: 300 AHNISLVLDLPMVGQRMSDNPMNAIFIPSPLPVEVSLIQVVGITHSGTYIEAASGENFAA 359

Query: 361 GSP-------SPR------------------------------PYRGGFIFEKIIGPVST 383
             P       SP+                               +RGGFI EKI+GP+ST
Sbjct: 360 SGPQRDFGMFSPKIGQLATVPPKQRTPEAIAKAIDSMSKLDETAFRGGFILEKIMGPIST 419

Query: 384 GHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLL 443
           GHLEL++RNPND PSVTFNYFKEPEDLQRCV G+  IEKIIESK+FS+FKYD +SV  L+
Sbjct: 420 GHLELQSRNPNDNPSVTFNYFKEPEDLQRCVNGMQIIEKIIESKAFSQFKYDYLSVPALI 479

Query: 444 NMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVV 503
           NMT + P+NL+P+H N STSLEQFC+DTVMTIWHYHGGCQVG VVDHDYKVLGVDALRV+
Sbjct: 480 NMTLNFPVNLVPRHDNASTSLEQFCKDTVMTIWHYHGGCQVGSVVDHDYKVLGVDALRVI 539

Query: 504 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 539
           DGSTF  SPGTNPQATVMMLGRYMG+RILSERLAS+
Sbjct: 540 DGSTFNASPGTNPQATVMMLGRYMGLRILSERLASD 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563226|ref|XP_003549865.1| PREDICTED: protein HOTHEAD-like [Glycine max]

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/563 (71%), Positives = 459/563 (81%), Gaps = 37/563 (6%)

Query: 10  FVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQN 69
           F A LA  LF    CA QK  PNY+FM NAT A  VSYYDYIVIGGGTAGCPLAA+LSQN
Sbjct: 9   FFAALAGILFSTQHCASQKV-PNYTFMHNATTAPDVSYYDYIVIGGGTAGCPLAATLSQN 67

Query: 70  ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCI 129
            SVLLLERG SPYGNPNI++  +F A L+D SPTSP+QRFISEDGV+++RARVLGGG+C+
Sbjct: 68  YSVLLLERGGSPYGNPNISDLAAFGAALSDTSPTSPAQRFISEDGVINSRARVLGGGSCL 127

Query: 130 NAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYN 189
           NAGFYTRA P Y REAGWDGR VNESY+WVEK V F P +++WQSA+RDGL+E+GV+P N
Sbjct: 128 NAGFYTRASPQYVREAGWDGRAVNESYEWVEKIVAFEPQLKQWQSAVRDGLIEIGVVPNN 187

Query: 190 GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPV 249
           GFTYDH+ GTK+GGTI DQN  RHTAADLLEYA P+G+TVLL A+VH+ILFR K  ++P 
Sbjct: 188 GFTYDHIDGTKVGGTIFDQNGFRHTAADLLEYAKPTGITVLLDATVHRILFRVKEGSKPT 247

Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
           AHGVVFRD+    H  YL+  P+NEIIVSAGALGSPQLLMLSG+GP +HLKAHNI + L+
Sbjct: 248 AHGVVFRDSLGGRHKVYLKADPRNEIIVSAGALGSPQLLMLSGIGPREHLKAHNIRITLN 307

Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSP------ 363
           QPLVGQGM+DNPMNAIFVPSPVPVEVSLI+VVGIT FGSYIE ASG NFAGGSP      
Sbjct: 308 QPLVGQGMTDNPMNAIFVPSPVPVEVSLIEVVGITSFGSYIEAASGENFAGGSPKDYGMF 367

Query: 364 SPR------------------------------PYRGGFIFEKIIGPVSTGHLELRTRNP 393
           SP+                               +RGGFI EKI+GP+S+GHLELRTR+P
Sbjct: 368 SPKIGQLSTVPPKERTPEALAKATELMETLEQAAFRGGFILEKIMGPISSGHLELRTRDP 427

Query: 394 NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL 453
           ND PSVTFNYF++P DLQRCVQG+ST+EKIIESK+FS F+Y NM V  LLN+TAS P+NL
Sbjct: 428 NDNPSVTFNYFQDPRDLQRCVQGLSTVEKIIESKAFSPFRYPNMPVPVLLNLTASAPVNL 487

Query: 454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPG 513
           LPKH+N+S SLEQ+CRDTVMTIWHYHGGCQVGKV+D DYK+LGVDALRV+DGSTF YSPG
Sbjct: 488 LPKHTNSSLSLEQYCRDTVMTIWHYHGGCQVGKVLDRDYKLLGVDALRVIDGSTFNYSPG 547

Query: 514 TNPQATVMMLGRYMGVRILSERL 536
           TNPQATVMMLGRYMGV+ILSERL
Sbjct: 548 TNPQATVMMLGRYMGVKILSERL 570

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053991|ref|XP_002298074.1| predicted protein [Populus trichocarpa] gi|222845332|gb|EEE82879.1| predicted protein [Populus trichocarpa]

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/565 (71%), Positives = 457/565 (80%), Gaps = 39/565 (6%)

Query: 10  FVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQN 69
           F A     LFFH FCAC +A P YSFM NAT+A  +SYYDYI++GGGTAGCPLAA+LSQN
Sbjct: 9   FGACFIGILFFHGFCACDRA-PYYSFMLNATSAPTISYYDYIIVGGGTAGCPLAATLSQN 67

Query: 70  ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCI 129
           ASVLLLERG SPYGNPNITN   F A L+D SPTSPSQRFISEDGV++ RARVLGGG+C+
Sbjct: 68  ASVLLLERGGSPYGNPNITNLAKFGAALSDPSPTSPSQRFISEDGVINARARVLGGGSCL 127

Query: 130 NAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYN 189
           NAGFYTRA P Y R AGWDGRL NESYQWVE++V F P M  WQSA+RDGL+E GVLP N
Sbjct: 128 NAGFYTRASPEYIRAAGWDGRLANESYQWVERRVAFEPQMGPWQSAVRDGLLEAGVLPNN 187

Query: 190 GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPV 249
           GFTYDH+ GTK+GGTI D+   RHTAADLLEYANP GLTVLLHA+V+KILF  K + +PV
Sbjct: 188 GFTYDHIKGTKVGGTIFDRAGNRHTAADLLEYANPGGLTVLLHATVYKILFATKARPKPV 247

Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
           AHGVV+RDA+ A+H AYL+ G KNEII+S+GALGSPQLLMLSGVGPA  L+AHNITVVLD
Sbjct: 248 AHGVVYRDASGAKHRAYLKRGLKNEIIISSGALGSPQLLMLSGVGPAQQLRAHNITVVLD 307

Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSP------ 363
           QP+VGQ MSDNPMNAIFVPSP+PVEVSLIQVVGITQFGSYIE ASG NF GGSP      
Sbjct: 308 QPMVGQLMSDNPMNAIFVPSPLPVEVSLIQVVGITQFGSYIEAASGENF-GGSPQRDYGM 366

Query: 364 -SPR------------------------------PYRGGFIFEKIIGPVSTGHLELRTRN 392
            SP+                               ++GGFI EKI+GP+STGHLELRTR+
Sbjct: 367 FSPKIGQLSTVPPKQRTPEALAKAIELMNNLDQQAFQGGFILEKIMGPISTGHLELRTRH 426

Query: 393 PNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLN 452
           P D PSVTFNYFKEP+DLQRCV+GISTIEK+I+S+ FSKF++D +SV  LLNMTAS P+N
Sbjct: 427 PEDNPSVTFNYFKEPQDLQRCVEGISTIEKVIDSRPFSKFRFDYLSVPQLLNMTASAPVN 486

Query: 453 LLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSP 512
           LLP+H N+S SLE FC+DTVMTIWHYHGGCQ G VVDHDYKV+GVDALRV+DGSTF  SP
Sbjct: 487 LLPRHYNSSQSLEDFCKDTVMTIWHYHGGCQAGSVVDHDYKVMGVDALRVIDGSTFNVSP 546

Query: 513 GTNPQATVMMLGRYMGVRILSERLA 537
           GTNPQATVMMLGRYMGV IL ERLA
Sbjct: 547 GTNPQATVMMLGRYMGVNILKERLA 571

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495903|ref|XP_004159980.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus]

 Score =  792 bits (2046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/565 (67%), Positives = 441/565 (78%), Gaps = 40/565 (7%)

Query: 10  FVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQN 69
           F + L  FL FH F +  +  P +SF+RNAT A  VSYYDYI++GGGTAGCPLAA+LS+ 
Sbjct: 10  FTSALTAFLLFHGFSSSHQV-PKFSFLRNATDAPTVSYYDYIIVGGGTAGCPLAATLSKK 68

Query: 70  ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCI 129
             VL+LERG SPYGNPNITN  +F A L+DLS +SPSQRF+SEDGV+++RARVLGGG+C+
Sbjct: 69  YKVLVLERGGSPYGNPNITNLSAFGAALSDLSASSPSQRFVSEDGVINSRARVLGGGSCL 128

Query: 130 NAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYN 189
           NAGFYTRA P Y R AGW+G+LVNESY+WVE+ V F PPM  WQSA+RDGL+E GV P N
Sbjct: 129 NAGFYTRASPDYVRRAGWEGKLVNESYEWVERVVAFEPPMGEWQSAVRDGLIEAGVKPNN 188

Query: 190 GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPV 249
           GFTYDHLYGTK+GGTI D +  RHTAADLL YANPS L VLL+A+   I+F + GK RP 
Sbjct: 189 GFTYDHLYGTKVGGTIFDHHGHRHTAADLLSYANPSNLNVLLYATARSIIFPSLGKRRPK 248

Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
           AHGVVF D+   +H AYL+ G K+EII+SAG LGSPQLLMLSG+GPA HLKAHNITVVLD
Sbjct: 249 AHGVVFEDSKGIKHRAYLKYGSKSEIIISAGCLGSPQLLMLSGLGPAQHLKAHNITVVLD 308

Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPR--- 366
            P+VGQ +SDNPMNA+FVPSPVPVEVSLI+VVGITQ G+YIE ASG NFAGG PS R   
Sbjct: 309 HPMVGQSVSDNPMNAVFVPSPVPVEVSLIEVVGITQNGTYIEAASGENFAGG-PSTRDFG 367

Query: 367 -----------------------------------PYRGGFIFEKIIGPVSTGHLELRTR 391
                                               +RGGFI EKI+GP+S+GHLELRTR
Sbjct: 368 MFSPKIGQLSTVPPKQRTAEAIAKATEAMKELNEAAFRGGFILEKIMGPISSGHLELRTR 427

Query: 392 NPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPL 451
           +PND PSVTFNYFKEP DL RCV GI+ I +II+SKSFS+F+YDN+SV TLLNMTAS P+
Sbjct: 428 DPNDNPSVTFNYFKEPTDLHRCVAGINLIRRIIDSKSFSRFRYDNVSVATLLNMTASAPI 487

Query: 452 NLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYS 511
           NLLPKH N S S EQ+CRDTVMTIWHYHGGCQ G VVD DY+V GVD+LRVVDGSTF+ S
Sbjct: 488 NLLPKHENLSRSPEQYCRDTVMTIWHYHGGCQTGAVVDRDYRVFGVDSLRVVDGSTFHDS 547

Query: 512 PGTNPQATVMMLGRYMGVRILSERL 536
           PGTNPQATVMMLGRY+GVRIL ERL
Sbjct: 548 PGTNPQATVMMLGRYVGVRILRERL 572

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452496|ref|XP_004143995.1| PREDICTED: protein HOTHEAD-like [Cucumis sativus]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/565 (67%), Positives = 441/565 (78%), Gaps = 40/565 (7%)

Query: 10  FVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQN 69
           F + L  FL FH F +  +  P +SF+RNAT A  VSYYDYI++GGGTAGCPLAA+LS+ 
Sbjct: 10  FTSALTAFLLFHGFSSSHQV-PKFSFLRNATDAPTVSYYDYIIVGGGTAGCPLAATLSKK 68

Query: 70  ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCI 129
             VL+LERG SPYGNPNITN  +F A L+DLS +SPSQRF+SEDGV+++RARVLGGG+C+
Sbjct: 69  YKVLVLERGGSPYGNPNITNLSAFGAALSDLSASSPSQRFVSEDGVINSRARVLGGGSCL 128

Query: 130 NAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYN 189
           NAGFYTRA P Y R AGW+G+LVNESY+WVE+ V F PPM  WQSA+RDGL+E GV P N
Sbjct: 129 NAGFYTRASPDYVRRAGWEGKLVNESYEWVERVVAFEPPMGEWQSAVRDGLIEAGVKPNN 188

Query: 190 GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPV 249
           GFTYDHLYGTK+GGTI D +  RHTAADLL YANPS L VLL+A+   I+F + GK RP 
Sbjct: 189 GFTYDHLYGTKVGGTIFDHHGHRHTAADLLSYANPSNLNVLLYATARSIIFPSLGKRRPK 248

Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
           AHGVVF D+   +H AYL+ G K+EII+SAG LGSPQLLMLSG+GPA HLKAHNITVVLD
Sbjct: 249 AHGVVFEDSKGIKHRAYLKYGSKSEIIISAGCLGSPQLLMLSGLGPAQHLKAHNITVVLD 308

Query: 310 QPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPR--- 366
            P+VGQ +SDNPMNA+FVPSPVPVEVSLI+VVGITQ G+YIE ASG NFAGG PS R   
Sbjct: 309 HPMVGQSVSDNPMNAVFVPSPVPVEVSLIEVVGITQNGTYIEAASGENFAGG-PSTRDFG 367

Query: 367 -----------------------------------PYRGGFIFEKIIGPVSTGHLELRTR 391
                                               +RGGFI EKI+GP+S+GHLELRTR
Sbjct: 368 MFSPKIGQLSTVPPKQRTAEAIAKATEAMKELNEAAFRGGFILEKIMGPISSGHLELRTR 427

Query: 392 NPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPL 451
           +PND PSVTFNYFKEP DL RCV GI+ I +II+SKSFS+F+YDN+SV TLLNMTAS P+
Sbjct: 428 DPNDNPSVTFNYFKEPTDLHRCVAGINLIRRIIDSKSFSRFRYDNVSVATLLNMTASAPI 487

Query: 452 NLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYS 511
           NLLPKH N S S EQ+CRDTVMTIWHYHGGCQ G VVD DY+V GVD+LRVVDGSTF+ S
Sbjct: 488 NLLPKHENLSRSPEQYCRDTVMTIWHYHGGCQTGAVVDRDYRVFGVDSLRVVDGSTFHDS 547

Query: 512 PGTNPQATVMMLGRYMGVRILSERL 536
           PGTNPQATVMMLGRY+GVRIL ERL
Sbjct: 548 PGTNPQATVMMLGRYVGVRILRERL 572

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481759|ref|XP_003611165.1| Choline dehydrogenase [Medicago truncatula] gi|355512500|gb|AES94123.1| Choline dehydrogenase [Medicago truncatula]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/564 (66%), Positives = 445/564 (78%), Gaps = 39/564 (6%)

Query: 15  ATFLFFHDFCACQK-AAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVL 73
           A  LF    CA  +     YSFM++AT+A  +SYYDYI++GGGTAGCPLAA+LSQN  VL
Sbjct: 14  AGILFSLKHCASHRDTGRKYSFMQDATSAPIISYYDYIIVGGGTAGCPLAATLSQNHRVL 73

Query: 74  LLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGF 133
           +LERG SPYGNPNITN  ++   L+D SP+SP+QRFISEDGV+++RARVLGGG+C+NAGF
Sbjct: 74  VLERGGSPYGNPNITNLSAYGVPLSDTSPSSPAQRFISEDGVINSRARVLGGGSCLNAGF 133

Query: 134 YTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTY 193
           YTRA P Y REAGWDG+LVNESY+WVE+ V FRP M++WQSA+RDGL+EVGVLPYNGFTY
Sbjct: 134 YTRASPRYVREAGWDGKLVNESYKWVERVVAFRPSMRQWQSAVRDGLLEVGVLPYNGFTY 193

Query: 194 DHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILF---RNKGKARPVA 250
           DH++GTK+GGTI D N  RHTAADLLEYAN + +T+LLHA+VH+ILF   + +  +RPVA
Sbjct: 194 DHIHGTKVGGTIFDHNGHRHTAADLLEYANTNTITLLLHATVHRILFTTHKERSNSRPVA 253

Query: 251 HGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQ 310
           HGV+++DA   EH AYL +G KNEIIVSAGALGSPQLLMLSG+G   HL+ HNI+VVLDQ
Sbjct: 254 HGVLYKDARGTEHRAYLNHGTKNEIIVSAGALGSPQLLMLSGIGAGHHLREHNISVVLDQ 313

Query: 311 PLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAG---------- 360
           PLVGQGMSDNPMNA++VPSP PVEVSLI VVGIT FGSYIE  SG  F            
Sbjct: 314 PLVGQGMSDNPMNAVYVPSPSPVEVSLISVVGITNFGSYIEAVSGAAFTSNGSEFTMFTP 373

Query: 361 --GSPSPRP-----------------------YRGGFIFEKIIGPVSTGHLELRTRNPND 395
             G  S  P                        RGGFI EK+IGP+STGHLELR  +PND
Sbjct: 374 KIGQFSKLPPKQMILQAIAKAIGRIESLDQEALRGGFILEKVIGPISTGHLELRNTDPND 433

Query: 396 TPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP 455
            P VTFNYF++P DL+RC+QG+ TIEKII+S +F+ F+Y+N+S   LLNM A+  +NLLP
Sbjct: 434 NPLVTFNYFQDPRDLERCIQGMGTIEKIIDSNAFAPFRYNNISFSMLLNMIANAQVNLLP 493

Query: 456 KHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTN 515
           KH+NTS SLEQFCRDTVMTIWHYHGGCQVG+VVD+DYKVLGVDALRV+DGSTF YSPGTN
Sbjct: 494 KHTNTSMSLEQFCRDTVMTIWHYHGGCQVGRVVDNDYKVLGVDALRVIDGSTFNYSPGTN 553

Query: 516 PQATVMMLGRYMGVRILSERLASN 539
           PQAT+MMLGRYMGVRIL ERLA++
Sbjct: 554 PQATLMMLGRYMGVRILRERLAAD 577

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481761|ref|XP_003611166.1| Choline dehydrogenase [Medicago truncatula] gi|355512501|gb|AES94124.1| Choline dehydrogenase [Medicago truncatula]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/545 (67%), Positives = 440/545 (80%), Gaps = 38/545 (6%)

Query: 33  YSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGS 92
           YSFM++AT+A  +S+YDYI+IGGGTAGCPLAA+LS+N  VL+LERG SPYGNPNITN  +
Sbjct: 33  YSFMQDATSAPIISFYDYIIIGGGTAGCPLAATLSKNHRVLVLERGGSPYGNPNITNLSA 92

Query: 93  FSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLV 152
           F   L+D SP+SP+QRFISEDGV+++RARVLGGG+C+NAGFYTRA P Y  EA WD +LV
Sbjct: 93  FGVALSDPSPSSPAQRFISEDGVINSRARVLGGGSCLNAGFYTRASPRYVSEAEWDEKLV 152

Query: 153 NESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQR 212
           +ESY+WVE+ V F+PPM++WQSA+RDGL+EVGVLPYNGFTYDH++GTK+GGTI D N  R
Sbjct: 153 DESYKWVERVVAFQPPMRQWQSAVRDGLLEVGVLPYNGFTYDHIHGTKVGGTIFDHNGHR 212

Query: 213 HTAADLLEYANPSGLTVLLHASVHKILF-RNKG--KARPVAHGVVFRDATDAEHIAYLRN 269
           HTAADLLEYAN + +T+LLHA+VH+ILF ++KG   ++P+AHGV+++DA   EH AYL +
Sbjct: 213 HTAADLLEYANTNTITLLLHATVHRILFTKSKGGLSSKPIAHGVLYKDARGTEHRAYLNH 272

Query: 270 GPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPS 329
           G KNEIIVSAGALGSPQLLMLSG+G A HLK HNI+VVL QP VGQGMSDNPMN+++VPS
Sbjct: 273 GTKNEIIVSAGALGSPQLLMLSGIGAAHHLKQHNISVVLHQPFVGQGMSDNPMNSVYVPS 332

Query: 330 PVPVEVSLIQVVGITQFGSYIEGASGVNFAG-----GSPSP------------------- 365
           P PVEVSLI VVGIT FGSYIE ASG  F G     G  SP                   
Sbjct: 333 PSPVEVSLISVVGITSFGSYIEAASGATFTGSQRDFGMFSPEIGQFSKLPPKQRTPEAIA 392

Query: 366 -----------RPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCV 414
                        +RGGFI EKI+GP+STGHLELR  +PN+ P VTFNYF++P DL+RC+
Sbjct: 393 KAIERMESLDQEAFRGGFILEKILGPISTGHLELRNTDPNENPLVTFNYFQDPRDLERCI 452

Query: 415 QGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMT 474
           QG++TIEKII+SK+FS FKY NMSV  LLNMTA+ P+NLLPKH+NTS SLEQFCRDTVMT
Sbjct: 453 QGMNTIEKIIDSKAFSPFKYTNMSVSMLLNMTANSPVNLLPKHTNTSMSLEQFCRDTVMT 512

Query: 475 IWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534
           IWHYHGGCQVG+VVD DYKV GV ALRV+DGSTF +SPGTNPQATVMMLGRYMGV+IL E
Sbjct: 513 IWHYHGGCQVGRVVDSDYKVAGVHALRVIDGSTFNHSPGTNPQATVMMLGRYMGVKILRE 572

Query: 535 RLASN 539
           R A +
Sbjct: 573 RFADD 577

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537255|ref|XP_002509694.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] gi|223549593|gb|EEF51081.1| glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/575 (66%), Positives = 430/575 (74%), Gaps = 75/575 (13%)

Query: 3   LRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPL 62
           +R  RL F A      F H  C+    APNYSF+++AT+A P SYYDYI++GGGTAGCPL
Sbjct: 6   IRFWRL-FGACFLGVFFSHSSCSSADKAPNYSFVKDATSAPPTSYYDYIIVGGGTAGCPL 64

Query: 63  AASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV 122
           AA+LSQNASVLLLERG SPYGNPNITN  +F A L+D SPTSPSQRFISEDGV++ RARV
Sbjct: 65  AATLSQNASVLLLERGGSPYGNPNITNLANFGAALSDPSPTSPSQRFISEDGVINARARV 124

Query: 123 LGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVE 182
           LGGG+C+NAGFYTRA   Y R  GWDGRLVNESYQWVEK V F P M++WQ+A+RDGL+E
Sbjct: 125 LGGGSCLNAGFYTRASTAYVRTVGWDGRLVNESYQWVEKIVAFEPIMRQWQTAVRDGLLE 184

Query: 183 VGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRN 242
            GVLP NGFTYDH  GTK+GGTI DQ+  RH+AADLL YANPSGLTVLLHA VHKILFR 
Sbjct: 185 AGVLPNNGFTYDHFNGTKVGGTIFDQDGHRHSAADLLYYANPSGLTVLLHAPVHKILFRT 244

Query: 243 KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAH 302
           +GKARP+AHGVVFRDA+ A+H AYL+ GPKNEIIVSAGALGSPQLLM+SGVGPA  LKAH
Sbjct: 245 QGKARPMAHGVVFRDASGAKHRAYLKRGPKNEIIVSAGALGSPQLLMISGVGPAAQLKAH 304

Query: 303 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGS 362
           NITVVLDQP+VGQ MSDNPMNAIF+PSP+PVEVSLIQVVGIT FGSYIE ASG +F  G 
Sbjct: 305 NITVVLDQPMVGQLMSDNPMNAIFIPSPLPVEVSLIQVVGITHFGSYIEAASGADFDAGV 364

Query: 363 PSPR---------------------------------------PYRGGFIFEKIIGPVST 383
            + R                                        +RGGFI EKI+GP+ST
Sbjct: 365 MATRRDYGMFSPKIGQLSTVPPKQRTPEAIAKAIELMNNLDEQAFRGGFILEKIMGPLST 424

Query: 384 GHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLL 443
           GHL+L  RNPND PSVTFNYFKEP+DLQRCV+GISTIEK+++                  
Sbjct: 425 GHLKLTNRNPNDNPSVTFNYFKEPQDLQRCVEGISTIEKVVD------------------ 466

Query: 444 NMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVV 503
                            S  LEQFC+DTVMTIWHYHGGCQVG VVD +YKVLGVDALRV+
Sbjct: 467 -----------------SXXLEQFCKDTVMTIWHYHGGCQVGTVVDTNYKVLGVDALRVI 509

Query: 504 DGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
           DGSTF  SPGTNPQATVMMLGRYMGV+ILSERLA+
Sbjct: 510 DGSTFNASPGTNPQATVMMLGRYMGVKILSERLAT 544

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	539
TAIR|locus:2034705	572	AT1G12570 [Arabidopsis thalian	0.638	0.601	0.699	8.5e-186
TAIR|locus:2173068	586	AT5G51950 [Arabidopsis thalian	0.662	0.609	0.625	3.8e-170
TAIR|locus:2078441	577	AT3G56060 [Arabidopsis thalian	0.662	0.618	0.596	7e-169
TAIR|locus:2173053	582	AT5G51930 [Arabidopsis thalian	0.593	0.549	0.608	4e-151
TAIR|locus:2032627	594	HTH "HOTHEAD" [Arabidopsis tha	0.573	0.520	0.587	7.8e-144
TAIR|locus:2032642	552	AT1G73050 [Arabidopsis thalian	0.920	0.898	0.487	3.6e-121
UNIPROTKB|Q945K2	563	MDL2 "(R)-mandelonitrile lyase	0.957	0.916	0.413	2.3e-101
TAIR|locus:2035830	501	AT1G14190 [Arabidopsis thalian	0.688	0.740	0.422	2.5e-100
TAIR|locus:505006121	503	AT1G14185 [Arabidopsis thalian	0.680	0.729	0.436	1.4e-99
UNIPROTKB|G4N440	625	MGG_16853 "Uncharacterized pro	0.283	0.244	0.301	4.3e-28

TAIR|locus:2034705 AT1G12570 [Arabidopsis thaliana (taxid:3702)]

 Score = 1287 (458.1 bits), Expect = 8.5e-186, Sum P(2) = 8.5e-186
 Identities = 242/346 (69%), Positives = 283/346 (81%)

Query:    14 LATFLFFHD-FCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASV 72
             +A  LF H   C+  KA PNYSFMR+AT +   SYYDYI+IGGGTAGCPLAA+LSQNASV
Sbjct:    12 VALSLFLHSPICSSDKA-PNYSFMRDATGSPTTSYYDYIIIGGGTAGCPLAATLSQNASV 70

Query:    73 LLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAG 132
             LLLERGDSPY NPNIT   +F A L+DLS +SPSQRF+SEDGV++ RARVLGGG+ +NAG
Sbjct:    71 LLLERGDSPYNNPNITRLSAFGAALSDLSESSPSQRFVSEDGVINARARVLGGGSALNAG 130

Query:   133 FYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFT 192
             FYTRA   Y R  GWDG L NESYQWVE KV F+PPM RWQ+A+RDGL+E G++P NGFT
Sbjct:   131 FYTRAGTKYVRNMGWDGALANESYQWVEAKVAFQPPMGRWQTAVRDGLLEAGIVPNNGFT 190

Query:   193 YDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHG 252
             YDH+ GTK GGTI D+N  RHTAADLLEYA+P G+TVLLHA+VH+ILFR +G  +P+A+G
Sbjct:   191 YDHINGTKFGGTIFDRNGNRHTAADLLEYADPKGITVLLHATVHRILFRTRGTTKPIANG 250

Query:   253 VVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPL 312
             VV+RD T   H AYL+ G  +EII+SAG LGSPQLLMLSGVGP+  L+A NITVV+DQP 
Sbjct:   251 VVYRDRTGQAHRAYLKEGALSEIILSAGTLGSPQLLMLSGVGPSAQLQAQNITVVMDQPH 310

Query:   313 VGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNF 358
             VGQGM DNPMNA+FVPSPVPVEVSLI+VVGIT  G+Y+E A G NF
Sbjct:   311 VGQGMYDNPMNAVFVPSPVPVEVSLIEVVGITGEGTYVEAAGGENF 356

GO:0005576 "extracellular region" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2173068 AT5G51950 [Arabidopsis thaliana (taxid:3702)]

 Score = 1142 (407.1 bits), Expect = 3.8e-170, Sum P(2) = 3.8e-170
 Identities = 225/360 (62%), Positives = 271/360 (75%)

Query:     1 MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGC 60
             M L+ L L     + T++F H  C+  KA   YSFM++AT A   + +DYI+IGGGT+GC
Sbjct:     1 MGLQILWLFRKIFIITYIF-HASCSPDKAG-YYSFMKDATLAPMFARFDYIIIGGGTSGC 58

Query:    61 PLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRA 120
              LAA+LSQNASVL+LERG +PY NP  T+  +F+  L++ SP S SQ FISEDGV +TRA
Sbjct:    59 ALAATLSQNASVLVLERGGAPYDNPTATDIENFATTLSNTSPKSWSQLFISEDGVYNTRA 118

Query:   121 RVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGL 180
             RVLGGG+ +NAGFYTRA   Y +E  W    V  +Y+WVEKKV F+PP+  WQ+A +DGL
Sbjct:   119 RVLGGGSVLNAGFYTRAGDEYVKETEWKTDEVEAAYEWVEKKVAFQPPVLGWQTAFKDGL 178

Query:   181 VEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILF 240
             +E G  PYNGFTYDH+YGTKIGGTI D+   RHTAADLLEYANP  + V LHASVHKILF
Sbjct:   179 LEAGEFPYNGFTYDHIYGTKIGGTIFDRAGHRHTAADLLEYANPGNIVVYLHASVHKILF 238

Query:   241 RNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLK 300
               KG+ RP A+GV+F+DA    H A L     NE+I+SAGA+GSPQLLMLSG+GPA HL 
Sbjct:   239 TTKGRPRPKAYGVIFQDANGVLHKAELEKNSMNEVILSAGAIGSPQLLMLSGIGPAAHLA 298

Query:   301 AHNIT-VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFA 359
             AH I  +VLD P+VGQGM DNPMNAIF+PSP PVEVSLIQVVGIT+F SYIEGASGV F+
Sbjct:   299 AHGIKPLVLDHPMVGQGMGDNPMNAIFIPSPTPVEVSLIQVVGITKFESYIEGASGVIFS 358

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2078441 AT3G56060 [Arabidopsis thaliana (taxid:3702)]

 Score = 1120 (399.3 bits), Expect = 7.0e-169, Sum P(2) = 7.0e-169
 Identities = 216/362 (59%), Positives = 274/362 (75%)

Query:     1 MDLRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGC 60
             M+    R      +A F+F HD C   +A  NY FM++AT A  +S++DYI+IGGGTAGC
Sbjct:     1 MNFHIFRFFQFILVAVFIF-HDSCYSDEAG-NYRFMKDATLAPKLSHFDYIIIGGGTAGC 58

Query:    61 PLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRA 120
              LAA+LSQNA+VL+LERG SPY +P  T+ G+F+  L +++P S SQ FISEDGV ++RA
Sbjct:    59 ALAATLSQNATVLVLERGGSPYDDPAATDIGNFANTLLNITPNSWSQLFISEDGVFNSRA 118

Query:   121 RVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGL 180
             RVLGGGT INAGFY+RAE  +  EAGW+   V  +Y+WVEKKVVF PP+ +WQSA RDGL
Sbjct:   119 RVLGGGTVINAGFYSRAEEDFVAEAGWERDEVEAAYEWVEKKVVFEPPVNKWQSAFRDGL 178

Query:   181 VEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILF 240
             +E GV PYNGFTY+H+ GTK GGTI D++  RHTAA+LLEYANP+ + V LHASVHKILF
Sbjct:   179 LEAGVTPYNGFTYEHIVGTKFGGTIFDRDGHRHTAANLLEYANPNMIVVYLHASVHKILF 238

Query:   241 RNKGKARPVAHGVVFRDATDAEHIAYL--RNGPKNEIIVSAGALGSPQLLMLSGVGPADH 298
               KG  RP A+GV+F DA    + A L  ++   +E+I+SAGA+ SPQLLMLSGVGPA H
Sbjct:   239 TIKGNQRPKAYGVIFLDANGVSYKAELATQDSTMSEVILSAGAIASPQLLMLSGVGPAAH 298

Query:   299 LKAHNIT-VVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVN 357
             L A+ +  V++DQP+VGQGM DNPMN +F+PSP PVEVSL+Q VGIT+FGSYIEG S ++
Sbjct:   299 LAAYRVNPVIVDQPMVGQGMGDNPMNPVFIPSPEPVEVSLVQAVGITKFGSYIEGGSALS 358

Query:   358 FA 359
              +
Sbjct:   359 LS 360

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2173053 AT5G51930 [Arabidopsis thaliana (taxid:3702)]

 Score = 1001 (357.4 bits), Expect = 4.0e-151, Sum P(2) = 4.0e-151
 Identities = 199/327 (60%), Positives = 244/327 (74%)

Query:    34 SFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSF 93
             +FM++AT A   + +DYI+IGGGTAGC LAA+LSQNASVL+LERG SPY NP  T+ G+ 
Sbjct:    59 TFMKDATLAPKNASFDYIIIGGGTAGCALAATLSQNASVLVLERGGSPYENPTATDMGNS 118

Query:    94 SAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVN 153
                L + +P S SQ FISEDGV +TR RVLGGG+ IN GFY+RA   Y  EA W+   V 
Sbjct:   119 VNTLLNNTPNSWSQLFISEDGVYNTRPRVLGGGSVINGGFYSRAGNDYVEEAEWEMEEVE 178

Query:   154 ESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRH 213
              +Y+WVEKK+VF P +  WQ A +DGL+E G  P NGFTYDH+YGTKIGGTI D+   RH
Sbjct:   179 AAYEWVEKKLVFEPQVIEWQKAFKDGLLEAGESPDNGFTYDHIYGTKIGGTIFDRAGHRH 238

Query:   214 TAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKN 273
             TAA+LLEYANP+ + V LHASVHK+LF  +      A+ V+F DA    H A L N   N
Sbjct:   239 TAANLLEYANPNRIVVYLHASVHKVLFTTE------AYEVLFEDANGVFHKANLANKATN 292

Query:   274 EIIVSAGALGSPQLLMLSGVGPADHLKAHNIT-VVLDQPLVGQGMSDNPMNAIFVPSPVP 332
             E+I+SAGALGSPQLLMLSGVGPA HL+AH +  +VLDQP+VGQGM+DNPMN + +PSP P
Sbjct:   293 EVILSAGALGSPQLLMLSGVGPAVHLEAHGVNPLVLDQPMVGQGMADNPMNFVAIPSPQP 352

Query:   333 VEVSLIQVVGITQFGSYIEGASGVNFA 359
             VE+SLIQ VGIT+F SYIEG SG++ +
Sbjct:   353 VELSLIQAVGITKFDSYIEGLSGLSLS 379

GO:0005576 "extracellular region" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2032627 HTH "HOTHEAD" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 7.8e-144, Sum P(2) = 7.8e-144
 Identities = 182/310 (58%), Positives = 232/310 (74%)

Query:    46 SYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSP 105
             S YDYIVIGGGTAGCPLAA+LSQN SVL+LERG  P+ N N++   +F   LAD+S +S 
Sbjct:    61 SSYDYIVIGGGTAGCPLAATLSQNFSVLVLERGGVPFTNANVSFLRNFHIGLADISASSA 120

Query:   106 SQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVF 165
             SQ F+S DGV + RARVLGGG+CINAGFY+RA+  + + AGWD +LV ESY WVE+++V 
Sbjct:   121 SQAFVSTDGVYNARARVLGGGSCINAGFYSRADAAFVKRAGWDPKLVKESYPWVEREIVH 180

Query:   166 RPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPS 225
             +P +  WQ ALRD L+EVGV P+NGFTYDH+ GTKIGGTI D+  +RHTAA+LL YANP 
Sbjct:   181 QPKLTLWQKALRDSLLEVGVRPFNGFTYDHVSGTKIGGTIFDRFGRRHTAAELLAYANPQ 240

Query:   226 GLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP 285
              L VL++A+V KI+F   G  RP   GV+F+D    +H A L N   +E+I+S+GA+GSP
Sbjct:   241 KLRVLIYATVQKIVFDTSG-TRPRVTGVIFKDEKGNQHQALLSNRKGSEVILSSGAIGSP 299

Query:   286 QLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ 345
             Q+LMLSG+GP   L+   I VVL+   VG+GM+DNPMN I VPS  P+E SLIQ VGIT+
Sbjct:   300 QMLMLSGIGPKKELQRLKIPVVLENEHVGKGMADNPMNTILVPSKAPIEQSLIQTVGITK 359

Query:   346 FGSYIEGASG 355
              G Y+E ++G
Sbjct:   360 MGVYVEASTG 369

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007267 "cell-cell signaling" evidence=IMP

GO:0046593 "mandelonitrile lyase activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0010430 "fatty acid omega-oxidation" evidence=IMP

TAIR|locus:2032642 AT1G73050 [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 252/517 (48%), Positives = 326/517 (63%)

Query:    35 FMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFS 94
             F+ NAT      YYDYI++GGGTAGCPLAA+LSQ+  VLLLERG  PY  PN+ +   F 
Sbjct:    41 FISNATDFASEDYYDYIIVGGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFL 100

Query:    95 AELADLSP-TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAG--WDGRL 151
               L D++   SP+Q FISE+GV + R RVLGG + INAGFY+RA+  +   +G  WD   
Sbjct:   101 TTLTDVNNFDSPAQSFISEEGVPNARGRVLGGSSAINAGFYSRADKQFFENSGLVWDLSS 160

Query:   152 VNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQ 211
             VN+SY+WVE+ +VFRP ++ WQ+A+RD L+EVGV P+NGFT +H  GTKIGG+  D+  +
Sbjct:   161 VNQSYEWVERAIVFRPQLRTWQTAIRDALLEVGVHPFNGFTLEHKVGTKIGGSTFDRTGR 220

Query:   212 RHTAADLLEYANPSGLTVLLHASVHKILFRNKGK---ARPVAHGVVFRDATDAEHIAYLR 268
             RH++ADLL YA  S + V ++A+V ++L  +      +   A GVV+RD     H A +R
Sbjct:   221 RHSSADLLRYARSSNIRVAVYATVERVLLASSPSVSGSNVSAIGVVYRDQLGRFHHALIR 280

Query:   269 NGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVP 328
             +  + E+I+SAGALGSPQLL LSG+GP  +L    I V LDQP VG  + DNP N I + 
Sbjct:   281 D--RGEVILSAGALGSPQLLFLSGIGPRSYLSTWGIPVALDQPHVGDFVYDNPRNGISIV 338

Query:   329 SPVPVEVSLIQVVGITQFGSYIEGASGV-NFAXXXXXXXXXX--------XXFIFEKIIG 379
              PVP+E SLIQVVG+T+ G+++E AS V  FA                     I EKI+G
Sbjct:   339 PPVPMENSLIQVVGVTEDGAFLEAASNVIPFASPLHSVFIRAPASPLYVPVTTIMEKILG 398

Query:   380 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXXYDNMSV 439
             PVS G L L + +    P V FNYF +P+DL+RCV G                  D M  
Sbjct:   399 PVSIGLLRLASTDVRINPVVRFNYFSDPQDLERCVNGTRKIGEILRSRAMQ----DFMIR 454

Query:   440 ETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDA 499
             E   N         LP   +    +  FCR TV TIWHYHGG  VGKVVD D KV+GV++
Sbjct:   455 EWFGNRRFRFVGAPLPVDQSNDLVMADFCRRTVSTIWHYHGGAVVGKVVDSDLKVIGVNS 514

Query:   500 LRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERL 536
             LR+VDGSTF  SPGTNPQAT+MMLGRYMG+++L ER+
Sbjct:   515 LRLVDGSTFNISPGTNPQATLMMLGRYMGLKMLRERM 551

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006952 "defense response" evidence=TAS

GO:0046202 "cyanide biosynthetic process" evidence=TAS

UNIPROTKB|Q945K2 MDL2 "(R)-mandelonitrile lyase 2" [Prunus dulcis (taxid:3755)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 226/547 (41%), Positives = 312/547 (57%)

Query:     6 LRLSFVATLATFLFFHDFCACQKAAPNY-SFMRNATAAKPVSYYDYIVIGGGTAGCPLAA 64
             L+ S V +LAT    HDF        +Y SF  +AT  +    YDY+++GGGT+GCPLAA
Sbjct:    20 LQYSEVHSLAT-TSDHDF--------SYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAA 70

Query:    65 SLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSP-TSPSQRFISEDGVVSTRARVL 123
             +LS+   VL+LERG  P   PN+  +  F   L       +P +RF+SEDG+ + R RVL
Sbjct:    71 TLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVL 130

Query:   124 GGGTCINAGFYTRAEP--YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLV 181
             GG + INAG Y RA    Y A    WD  LVN++Y+WVE  +V++P  Q WQS  +   +
Sbjct:   131 GGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFL 190

Query:   182 EVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFR 241
             E GV P +GF+ DH  GT+I G+  D    RH A +LL   N + L V +HASV KI+F 
Sbjct:   191 EAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFS 250

Query:   242 NKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKA 301
             N       A GV++RD+    H A++R+  K E+IVSAG +G+PQLL+LSGVGP  +L +
Sbjct:   251 NAPGL--TATGVIYRDSNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSS 306

Query:   302 HNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGS--YIEGA 353
              NI VVL  P VGQ + DNP N I +  P P+E +++ V+GI+       F S  +    
Sbjct:   307 LNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPP 366

Query:   354 SGVNFAXXXXXXXXXXXXFIFEKIIGPVSTGHLELRTR-NPNDTPSVTFNYFKEPEDLQR 412
              G  F                 K+ GP+S G L L++  N   +P+V FNY+    DL  
Sbjct:   367 FGF-FPSASYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSH 425

Query:   413 CVQGXXXXXXXXXXXXXXXXXYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTV 472
             CV G                  +++      N+   +PL   PK      + E FCR++V
Sbjct:   426 CVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILG-IPL---PKDQTDDAAFETFCRESV 481

Query:   473 MTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRIL 532
              + WHYHGGC VGKV+D D++V G++ALRVVDGSTF Y+P ++PQ   +MLGRY+G++IL
Sbjct:   482 ASYWHYHGGCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKIL 541

Query:   533 SERLASN 539
              ER AS+
Sbjct:   542 QERSASD 548

GO:0046593 "mandelonitrile lyase activity" evidence=TAS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0050898 "nitrile metabolic process" evidence=TAS

TAIR|locus:2035830 AT1G14190 [Arabidopsis thaliana (taxid:3702)]

 Score = 755 (270.8 bits), Expect = 2.5e-100, Sum P(2) = 2.5e-100
 Identities = 160/379 (42%), Positives = 227/379 (59%)

Query:    40 TAAKPVS--YYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAEL 97
             T AK VS   +DYIV+GGGTAGC LAA+LS+  SVL++ERG SP+G+P +     F   L
Sbjct:     6 TDAKEVSGKSFDYIVVGGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLVEERKYFGYSL 65

Query:    98 ADLSP-TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESY 156
              +    +S +Q F S DG+ + R RVLGG + IN GFY+RA   + ++AGWD  LV ESY
Sbjct:    66 LNTDEYSSVAQSFTSVDGIENYRGRVLGGSSAINGGFYSRASDEFVKKAGWDKGLVQESY 125

Query:   157 QWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAA 216
             +WVE KVVF P + +WQS ++ G +E G  PYNG++ +H  GTKIGG+I DQ  +RHT+A
Sbjct:   126 KWVESKVVFMPELTQWQSVVQFGFLEAGFYPYNGYSLEHTQGTKIGGSIYDQCGKRHTSA 185

Query:   217 DLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEII 276
             DLL +  P+ +TVLL+ +V  I+F +  K R V    +  D   ++         + E+I
Sbjct:   186 DLLGFGKPNCITVLLNTTVKSIIFDSSNKTRAVGVRFMESDGNSSKSYKVHVEQHRGEVI 245

Query:   277 VSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS 336
             ++AGALGSPQ+L+LSG+GP +HLK  +I V+++   VG+ MSDNP  ++ V        S
Sbjct:   246 LAAGALGSPQILLLSGIGPENHLKDFDIPVIVNLKEVGRKMSDNPAISLLVD-----RFS 300

Query:   337 LIQVVGITQFGSYIEGASGVNFAXXXXXXXXXXXXFIFEKIIGPVSTGHLELRTRNPNDT 396
               + +   Q  +  EG   +  +             I  KI  P S G L+L + NP + 
Sbjct:   301 QNRTLEPPQVAAIAEGYKFILESEVLPTDITTTRISIAAKIAFPKSKGRLKLNSTNPREN 360

Query:   397 PSVTFNYFKEPEDLQRCVQ 415
             PSV FNY +   DL  C++
Sbjct:   361 PSVKFNYLENKADLDACLE 379

GO:0005634 "nucleus" evidence=ISM

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:505006121 AT1G14185 [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
 Identities = 165/378 (43%), Positives = 227/378 (60%)

Query:    40 TAAKPVS--YYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAEL 97
             T  K VS   +DYIV+GGGTAGC LAA+LS+  SVL++ERG SP+G+P + +   +   L
Sbjct:    27 TDPKEVSGKSFDYIVVGGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLVEDKKYYGYSL 86

Query:    98 ADLSP-TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESY 156
              +    +S +Q F S DG+ + R RVLGG + IN GFY+RA   + ++AGWD  LV ESY
Sbjct:    87 INTDEYSSVAQSFTSVDGIKNHRGRVLGGSSAINGGFYSRASDEFVKKAGWDKDLVQESY 146

Query:   157 QWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAA 216
             +WVE KVVF P + RWQS ++ G +E G  PYNG++ +H  GTKIGG+I DQ  +RHT+A
Sbjct:   147 KWVESKVVFMPELTRWQSIVQFGFLEAGFYPYNGYSLEHTQGTKIGGSIFDQCGKRHTSA 206

Query:   217 DLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEII 276
             DLL Y  P+ +TVLL+A+V  I+F +  K R V    +  D   ++         + E+I
Sbjct:   207 DLLGYGKPNCITVLLNATVKSIIF-DANKTRAVGVRFMESDGNSSKSYKVHVEQHRGEVI 265

Query:   277 VSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPS-PVPVEV 335
             ++AGALGSPQ+L+LSG+GP +HL   +I V+++   VG+ MSDNP  ++ V      + V
Sbjct:   266 LAAGALGSPQILLLSGIGPENHLNDFDIPVIVNLKEVGKQMSDNPAISLLVDRFSQNLTV 325

Query:   336 SLIQVVGITQFGSYIEGASGVNFAXXXXXXXXXXXXFIFEKIIGPVSTGHLELRTRNPND 395
                QVV IT      EG   +  +             I  KI  P S G L+L   NP +
Sbjct:   326 DPPQVVAIT------EGFKFILQSLVLPTNITTTRTAISAKIAFPKSKGRLKLNNTNPRE 379

Query:   396 TPSVTFNYFKEPEDLQRC 413
              PSVTFNY +   DL  C
Sbjct:   380 NPSVTFNYLENKADLDAC 397

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016832 "aldehyde-lyase activity" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|G4N440 MGG_16853 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 168 (64.2 bits), Expect = 4.3e-28, Sum P(3) = 4.3e-28
 Identities = 48/159 (30%), Positives = 71/159 (44%)

Query:   165 FRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD---LLEY 221
             +  P   W   +   L E+G+     F    L G +   + I+   Q   ++    L E 
Sbjct:   208 YAQPFSTW---MEPALNEIGIDSTQDFNSGKLMGAQYCSSTINAAKQTRESSQTSYLDEA 264

Query:   222 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGA 281
             ++   L V       K++F +  KA  V        A     +       + E+I+SAGA
Sbjct:   265 SSRPNLKVYSLTKARKVIFDSNKKATGVEVQSQVAGAIGLGGLTKFTLSARKEVILSAGA 324

Query:   282 LGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDN 320
               SPQLLMLSG+GP D L    I +V ++P VGQGM D+
Sbjct:   325 FQSPQLLMLSGIGPKDQLNKFQIPIVAERPGVGQGMEDH 363

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.3.4	LOW CONFIDENCE prediction!
4th Layer	4.1.2.10	LOW CONFIDENCE prediction!
3rd Layer	4.1.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	539
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	0.0
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	2e-44
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	4e-37
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	3e-33
pfam05199	139	pfam05199, GMC_oxred_C, GMC oxidoreductase	8e-26
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	5e-20
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	3e-14
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	3e-13
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	5e-07
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-04
COG2081	408	COG2081, COG2081, Predicted flavoproteins [General	4e-04
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	7e-04
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	7e-04
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	8e-04
pfam05834	374	pfam05834, Lycopene_cycl, Lycopene cyclase protein	0.002
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	0.002
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	0.003

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score =  741 bits (1914), Expect = 0.0
 Identities = 319/572 (55%), Positives = 397/572 (69%), Gaps = 39/572 (6%)

Query: 3   LRCLRLSFVATLATFLFFHDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPL 62
           L CL  S  +   +    + +    KA+   S   +++++   S YDYIV+GGGTAGCPL
Sbjct: 11  LLCLPTSSSSQGKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPL 70

Query: 63  AASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV 122
           AA+LSQN SVLLLERG  P+GN N++   +F   LAD SPTS SQ FIS DGV++ RARV
Sbjct: 71  AATLSQNFSVLLLERGGVPFGNANVSFLENFHIGLADTSPTSASQAFISTDGVINARARV 130

Query: 123 LGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVE 182
           LGGGTCINAGFY+RA   + ++AGWD +LVNESY WVE+++V  P +  WQ+ALRD L+E
Sbjct: 131 LGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQAALRDSLLE 190

Query: 183 VGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRN 242
           VGV P+NGFTYDH+YGTK+GGTI D+  +RHTAA+LL   NP+ L VLLHA+V KI+F +
Sbjct: 191 VGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVF-D 249

Query: 243 KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAH 302
               RP A GV+F+D    +H A+L N   +EII+SAGA+GSPQ+L+LSG+GP   LK H
Sbjct: 250 TSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKH 309

Query: 303 NITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGS 362
            I VVL    VG+GM+DNPMN+IFVPS  PVE SLIQ VGIT+ G YIE +SG   +  S
Sbjct: 310 KIPVVLHNEHVGKGMADNPMNSIFVPSKAPVEQSLIQTVGITKMGVYIEASSGFGQSPDS 369

Query: 363 -------------------PSPRP------------------YRGGFIFEKIIGPVSTGH 385
                              P  R                   + GGFI EKI GP+STGH
Sbjct: 370 IHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEKIAGPISTGH 429

Query: 386 LELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKF-KYDNMSVETLLN 444
           L L   N +D PSVTFNYFK P+DLQRCV GI TIEKI+++  F+ F + D  ++E +LN
Sbjct: 430 LSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLN 489

Query: 445 MTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVD 504
           M+    +NL+PKH+N + SLEQFC+DTV+TIWHYHGGC VGKVVD +YKVLGV  LRV+D
Sbjct: 490 MSVKANINLIPKHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVID 549

Query: 505 GSTFYYSPGTNPQATVMMLGRYMGVRILSERL 536
           GSTF  SPGTNPQATVMM+GRYMGV+IL ERL
Sbjct: 550 GSTFDESPGTNPQATVMMMGRYMGVKILRERL 581

Length = 587

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  164 bits (418), Expect = 2e-44
 Identities = 135/568 (23%), Positives = 197/568 (34%), Gaps = 110/568 (19%)

Query: 48  YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSF----SAELADLSP 102
           YDY+++G G+AG  LAA LS    SVL+LE G      P I    ++    +    D   
Sbjct: 8   YDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDR-RPLIQMPAAYAFLMNGPRYDWGF 66

Query: 103 TSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA----------------------EPY 140
            +  +  +    +   R +VLGG + IN   Y R                        PY
Sbjct: 67  RTEPEPHLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPY 126

Query: 141 YAR------EAGWDGRLVNESYQWVEKKVVFRPPMQRW-QSALRDGLVEVGVLPYNGFTY 193
           + R        G D R  +     +    V  P        A  +   ++G         
Sbjct: 127 FKRAEDLLGVGGQDLRTWHGGGGPLP---VSPPRSPNPIARAFIEAGEQLGFPTTPDP-- 181

Query: 194 DHLYGTKIGGTIIDQNSQRH-----TAADLLEYA-NPSGLTVLLHASVHKILFRNKGKAR 247
               G    G      +  +      A   L+ A     LT+L  A V +IL        
Sbjct: 182 ---NGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGDRA-- 236

Query: 248 PVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVV 307
            V   V   D    E     R     E++++AGA+ SP+LL+LSG+GPADHL  H I VV
Sbjct: 237 -VGVEVEIGDGGTIETAVAAR-----EVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVV 290

Query: 308 LDQPLVGQGMSDNP---MNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGV-------- 356
              P VGQ + D+    +            +SL   +GI     Y+    G         
Sbjct: 291 GRLPGVGQNLQDHLEIYVAFEATEPTNDSVLSLFSKLGIG-ADRYLLTRDGPGATNHFEG 349

Query: 357 NFAGGSPSPRPYRGGFIFEKIIG-------------------PVSTGHLELRTRNPNDTP 397
            F    P+     G + F  +                     P S G + LR+ +P++ P
Sbjct: 350 GFVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMRPKSRGSVTLRSPDPDNRP 409

Query: 398 SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKH 457
            +  NY     D      GI    +II   +                        L P  
Sbjct: 410 VIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDAR----------------RKAELAPGP 453

Query: 458 SNTSTS-LEQFCRDTVMTIWHYHGGCQVGK-----VVDHDYKVLGVDALRVVDGSTFYYS 511
             T+   +    R    T +H  G C++G      V D   +V G++ LRVVD S    S
Sbjct: 454 RVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTS 513

Query: 512 PGTNPQATVMMLGRYMGVRILSERLASN 539
            G NP  T++ L       IL +  A+ 
Sbjct: 514 TGVNPNLTIIALAERAADHILGDAPAAV 541

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  143 bits (363), Expect = 4e-37
 Identities = 146/559 (26%), Positives = 228/559 (40%), Gaps = 123/559 (22%)

Query: 49  DYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYG-NPNITNSGSF----SAELADLS 101
           DYI+IGGG+AG  LA  LS+  + SVL+LE G S Y  +  I    +       +  +  
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 102 PTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPY----YAREAG---WDGRLVNE 154
             +  +  ++   V   R +VLGG + IN   Y R  P     +A+  G   WD      
Sbjct: 61  YETEPEPHMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLP 120

Query: 155 SYQWVEK---------------KVVFRPPMQRWQSALRDGLVEVG--VLP-YNGFTYDHL 196
            Y+ +E                KV   P       A  +  VE G    P  NGF  +  
Sbjct: 121 YYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDVNGFRQE-- 178

Query: 197 YGTKIGGTIIDQ---NSQRHTAADLLEYANPS----GLTVLLHASVHKILFRNKGKARPV 249
                G   +D    N +R +AA    Y +P+     L V   A V KI F         
Sbjct: 179 -----GFGPMDSTVHNGRRVSAAR--AYLHPAMKRPNLEVQTRAFVTKINFEGNR----- 226

Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
           A GV F+     EH    +     E+I+SAGA+ SPQLL LSG+G A+HL+   I   + 
Sbjct: 227 ATGVEFKKGGRKEHTEANK-----EVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIH 281

Query: 310 QPLVGQGMSDNPMNAIF---VPSPVPVEVSLIQV---------------VGIT-QF--GS 348
            P VG+ + D+ +          PV +  SL  +                G +  F  G 
Sbjct: 282 LPGVGENLQDH-LEVYVQHACKQPVSLYPSLNWLKQPFIGAQWLFGRKGAGASNHFEGGG 340

Query: 349 YIEGASGVNFAG-------------GSPSPRPYRGGFIFEKIIGPV---STGHLELRTRN 392
           ++     V++               G+ +P+ +     F+  +GP+   S GH+++++++
Sbjct: 341 FVRSNDDVDYPNIQYHFLPVAIRYDGTKAPKAHG----FQVHVGPMYSNSRGHVKIKSKD 396

Query: 393 PNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLN 452
           P + P + FNY    ED +   + I    +I++ K+   ++   +S              
Sbjct: 397 PFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEIS-------------- 442

Query: 453 LLP-KHSNTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDG 505
             P     T   +++F R    T  H  G C++G       VVD + +V G++ LRVVD 
Sbjct: 443 --PGPEVQTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDA 500

Query: 506 STFYYSPGTNPQATVMMLG 524
           S        N  A V+M+G
Sbjct: 501 SIMPRITNGNLNAPVIMMG 519

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  132 bits (333), Expect = 3e-33
 Identities = 135/527 (25%), Positives = 198/527 (37%), Gaps = 100/527 (18%)

Query: 49  DYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAELAD-----LS 101
           D +V+GGG+AGC +AA LS++   +V +LE G      P   +     A+L D     + 
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAG------PGYRDPSRLPAQLTDGLRLPIG 55

Query: 102 PTSP-----SQRFISEDGVVST--RARVLGGGTCINAGFYTRAEPY---YAREAGWDGRL 151
           P SP                S   R RVLGG   +N G++ RA P         GW    
Sbjct: 56  PASPVVWRYGVELTDGPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIPGWSWDD 115

Query: 152 VNESYQWVEKKVVF---------------RPPMQRWQSALRDGLVEVG---VLPYNGFTY 193
           V   ++ +E  + F                  +    +A     +  G   +   NG   
Sbjct: 116 VLPHFRAIETDLDFDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIADLNGSGP 175

Query: 194 DHLYGTKIGGTIIDQNSQRHT---AADLLEYANPSGLTVLLHASVHKILFRNKGKARPVA 250
           D   G  +G   ++ +  R      A LL       LTV     V +ILF         A
Sbjct: 176 DAPTG--VGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFS-----GTRA 228

Query: 251 HGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQ 310
            GV          +   R      +++ AGA+ S  LL+LSG+GPA+ L+A  I VVLD 
Sbjct: 229 VGVEVLGDGGPRTLRADR------VVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDL 282

Query: 311 PLVGQGMSDNP---MNAIFVPSP-VPVEVSLIQVV---GITQFGSYIEGASGVNFAGGSP 363
           P VG    D+P   +   + P+   P    +++ V      +   Y   A       GSP
Sbjct: 283 P-VGSDFVDHPEWVLPYRWRPTHDRPDTSPVLETVLNTADIEIRPYT--AGFTALVPGSP 339

Query: 364 SPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKI 423
              P+ G      ++ P S G + L + +P D P +   Y     D      G +   ++
Sbjct: 340 RDDPHLG----VALMRPHSRGRIRLASADPADPPRIEHRYDSSAADRAALRAGAALAHEL 395

Query: 424 IESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQ 483
           + S        +    E      AS  L  L      +TS             H  G C+
Sbjct: 396 LGSPELGPL-LEPAVREG----EASWVLARL------ATSQ------------HLCGSCR 432

Query: 484 VGK------VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLG 524
           +G       VVD   +V GV+ L VVDGS     P   P AT +M+ 
Sbjct: 433 MGGRDDPGAVVDARCRVRGVEGLWVVDGSILPVIPSRGPHATAVMVA 479

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase

 Score =  102 bits (256), Expect = 8e-26
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 19/150 (12%)

Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSV 439
           P S G + L + +P   P +  NY  +P DL      +    +I+ +             
Sbjct: 1   PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILAAA------------ 48

Query: 440 ETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK-----VVDHDYKV 494
             L+ +T      +      +   + ++ R   +T WH  G C++G      VVD D +V
Sbjct: 49  --LVELTPGPVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGADPDDGVVDPDLRV 106

Query: 495 LGVDALRVVDGSTFYYSPGTNPQATVMMLG 524
            GVD LRVVD S F  SP  NP  T+  L 
Sbjct: 107 HGVDNLRVVDASVFPSSPSGNPTLTIYALA 136

This domain found associated with pfam00732. Length = 139

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 93.0 bits (232), Expect = 5e-20
 Identities = 41/93 (44%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 227 LTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ 286
           LT++ HA   +ILF  K      A GV +      E     R     E+I+SAGA+ SPQ
Sbjct: 216 LTIVTHALTDRILFEGK-----RAVGVEYERGGGRETARARR-----EVILSAGAINSPQ 265

Query: 287 LLMLSGVGPADHLKAHNITVVLDQPLVGQGMSD 319
           LL LSG+GPA+HLK   I VV D P VG+ + D
Sbjct: 266 LLQLSGIGPAEHLKELGIPVVHDLPGVGENLQD 298

Length = 560

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 54/204 (26%), Positives = 72/204 (35%), Gaps = 33/204 (16%)

Query: 119 RARVLGGGTCINAGFYTRAEPY----YAREAG---WDGRLVNESYQWVEKKV----VFRP 167
               +GGG+ +N     R        +A E G   W           VE  +        
Sbjct: 23  AGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVEGPLGVTTKGIE 82

Query: 168 PMQRWQSALRDGLVEVG----VLP--YNGFTYD--HLYGTKIGGTIIDQNSQRHTAADLL 219
                Q AL     E+G     +P   NG  Y      G   G     Q++ R      L
Sbjct: 83  ESPLNQ-ALLKAAEELGYPVEAVPRNSNGCHYCGFCGLGCPTG---AKQSTARTWLRPAL 138

Query: 220 EYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSA 279
           E      L +L  A   KI+   +G     A GV  RD      I  L    K E++V+A
Sbjct: 139 E----RNLRILTGAKAEKIIILGRGGR---AVGVEARD--GGGGIKRLITAAK-EVVVAA 188

Query: 280 GALGSPQLLMLSGVGPADHLKAHN 303
           GAL +P LL+ SG+G   H    N
Sbjct: 189 GALNTPPLLLRSGLGKNPHPVGKN 212

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 71.8 bits (177), Expect = 3e-13
 Identities = 37/158 (23%), Positives = 62/158 (39%), Gaps = 21/158 (13%)

Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSV 439
             S G ++L++ +P   PS+ FNY    +D +     I    +I+   +   ++   +S 
Sbjct: 391 SPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREIS- 449

Query: 440 ETLLNMTASMPLNLLP-KHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKV 494
                          P     T   ++ F R+   T +H    C++G     VVD + +V
Sbjct: 450 ---------------PGADVQTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRV 494

Query: 495 LGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRIL 532
            GV+ LRVVD S        N  A  +M+       I 
Sbjct: 495 HGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIR 532

Length = 560

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score = 52.1 bits (126), Expect = 5e-07
 Identities = 22/37 (59%), Positives = 26/37 (70%), Gaps = 2/37 (5%)

Query: 48 YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPY 82
          YDYI+IG G+AGC LA  LS++   SVLLLE G   Y
Sbjct: 6  YDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDY 42

Length = 560

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 48  YDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYGNPNITNSGSFSAELADLSP 102
           YD +++G G AG   A  L++    VL+LE+G  P G       G     L +L P
Sbjct: 4   YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP-GAKPCCGGGLSPRALEELIP 58

Length = 396

>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only]

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 47 YYDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSP--------YGNPNITNSGSF 93
           +D I+IGGG AG   A S ++    VLL+++G            G  N TNS + 
Sbjct: 3  RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAP 58

Length = 408

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81
          YD +V+G G AG   A  L+     VLLLE+   P
Sbjct: 1  YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFP 35

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 41.8 bits (99), Expect = 7e-04
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP--------YGNPNITNSGSFSA 95
          YD IVIGGG AG   A S ++    VLL+++G            G  N+TNS     
Sbjct: 1  YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLGRKILISGGGRCNVTNSVEPDE 57

Length = 405

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 48 YDYIVIGGGTAGCPLAASLS-QNASVLLLER 77
          YD I++GG  AG  LA +LS Q   VL+LER
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64

Length = 567

>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 49  DYIVIGGGTAGCPLAASLSQNA---SVLLLERGDSPYGNPNITNSGSFSAELADLSPTSP 105
           D +++G G AG  LA  L Q      VLL++ G  P    N T    +S E  DL P +P
Sbjct: 1   DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHT----WSDEFEDLGPLAP 56

This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare. Length = 374

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79
          YD IVIG G AG PLAA  +     V L+ERG 
Sbjct: 6  YDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38

Length = 463

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG 83
          D +VIGGG  G   A  L++   SV LLERGD   G
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASG 36

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	539
PLN02785	587	Protein HOTHEAD	100.0
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
PF05199	144	GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078	99.97
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.72
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.64
PRK07121	492	hypothetical protein; Validated	99.63
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.61
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.59
PRK08274	466	tricarballylate dehydrogenase; Validated	99.58
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.57
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.57
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.56
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.56
PRK06175	433	L-aspartate oxidase; Provisional	99.54
PRK12839	572	hypothetical protein; Provisional	99.51
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.51
COG2081	408	Predicted flavoproteins [General function predicti	99.51
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.5
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.49
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.47
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.47
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.47
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.47
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.46
PLN02815	594	L-aspartate oxidase	99.46
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.46
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.46
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.45
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.45
PRK07395	553	L-aspartate oxidase; Provisional	99.44
PRK07804	541	L-aspartate oxidase; Provisional	99.44
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.42
PRK09077	536	L-aspartate oxidase; Provisional	99.41
PRK08071	510	L-aspartate oxidase; Provisional	99.41
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.4
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.4
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.4
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.4
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.38
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.37
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.36
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.35
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.35
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.34
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.34
PRK07512	513	L-aspartate oxidase; Provisional	99.33
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.32
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.29
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.28
PRK08275	554	putative oxidoreductase; Provisional	99.26
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.24
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.23
COG0579	429	Predicted dehydrogenase [General function predicti	99.23
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.21
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.21
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.19
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.19
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.18
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.18
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.17
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.16
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.15
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.15
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.15
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.14
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.14
PLN02661	357	Putative thiazole synthesis	99.13
PRK08401	466	L-aspartate oxidase; Provisional	99.13
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.1
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.1
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.09
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.09
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.08
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.08
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.07
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.06
PRK05257	494	malate:quinone oxidoreductase; Validated	99.04
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.04
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	99.02
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.0
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.99
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.98
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.96
PRK10157	428	putative oxidoreductase FixC; Provisional	98.94
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.89
COG3573	552	Predicted oxidoreductase [General function predict	98.89
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.89
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.86
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.85
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.85
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.84
PRK10015	429	oxidoreductase; Provisional	98.84
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.84
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.83
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.81
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.77
PRK06185	407	hypothetical protein; Provisional	98.73
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.72
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	98.71
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.66
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.65
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.65
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.64
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.63
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.63
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.63
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.62
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.6
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.59
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.58
PLN02985	514	squalene monooxygenase	98.56
PLN02507	499	glutathione reductase	98.56
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.55
PRK07208	479	hypothetical protein; Provisional	98.55
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.53
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.52
PRK06847	375	hypothetical protein; Provisional	98.5
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.49
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.48
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.48
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.47
PRK08244	493	hypothetical protein; Provisional	98.47
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.46
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.45
PLN02697	529	lycopene epsilon cyclase	98.44
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.44
PRK06126	545	hypothetical protein; Provisional	98.44
PRK07045	388	putative monooxygenase; Reviewed	98.43
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.41
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.41
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.4
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.38
PLN02463	447	lycopene beta cyclase	98.38
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.38
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.36
PRK07190	487	hypothetical protein; Provisional	98.35
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.35
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.34
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.33
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.33
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.33
PTZ00058	561	glutathione reductase; Provisional	98.33
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	98.33
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.32
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.31
PRK06834	488	hypothetical protein; Provisional	98.31
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.31
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.3
PRK08163	396	salicylate hydroxylase; Provisional	98.3
PRK06370	463	mercuric reductase; Validated	98.3
PRK06116	450	glutathione reductase; Validated	98.29
PRK06184	502	hypothetical protein; Provisional	98.28
PRK08013	400	oxidoreductase; Provisional	98.27
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.26
KOG2960	328	consensus Protein involved in thiamine biosynthesi	98.26
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.25
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.24
PRK11445	351	putative oxidoreductase; Provisional	98.23
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.23
PRK07588	391	hypothetical protein; Provisional	98.23
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.23
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.22
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.22
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.21
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.2
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.2
KOG2853	509	consensus Possible oxidoreductase [General functio	98.2
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.18
PRK14694	468	putative mercuric reductase; Provisional	98.18
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.17
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.17
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.16
PLN02546	558	glutathione reductase	98.15
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.14
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.14
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.13
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.13
TIGR02053	463	MerA mercuric reductase. This model represents the	98.13
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.12
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.11
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.09
PRK13748	561	putative mercuric reductase; Provisional	98.09
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.08
PRK07236	386	hypothetical protein; Provisional	98.07
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.07
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.06
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.06
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.05
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.05
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.03
PTZ00052	499	thioredoxin reductase; Provisional	98.01
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.01
PLN02487	569	zeta-carotene desaturase	97.97
PRK06753	373	hypothetical protein; Provisional	97.96
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.94
PRK09897	534	hypothetical protein; Provisional	97.93
PRK07538	413	hypothetical protein; Provisional	97.92
PRK05868	372	hypothetical protein; Validated	97.92
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.88
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.88
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.86
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.86
PRK14727	479	putative mercuric reductase; Provisional	97.85
PRK07846	451	mycothione reductase; Reviewed	97.84
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.84
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.82
PRK09126	392	hypothetical protein; Provisional	97.81
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.81
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.77
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.76
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	97.76
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.75
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.73
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.72
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.7
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.7
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.66
KOG2852	380	consensus Possible oxidoreductase [General functio	97.65
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.65
PTZ00367	567	squalene epoxidase; Provisional	97.63
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.61
PLN02268	435	probable polyamine oxidase	97.61
PLN02676	487	polyamine oxidase	97.61
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	97.55
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.55
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.55
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.55
PRK07233	434	hypothetical protein; Provisional	97.52
PLN02576	496	protoporphyrinogen oxidase	97.5
PRK06996	398	hypothetical protein; Provisional	97.49
PLN02568	539	polyamine oxidase	97.48
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.45
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.45
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.44
PRK10262	321	thioredoxin reductase; Provisional	97.44
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.43
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.42
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.39
PRK08294	634	phenol 2-monooxygenase; Provisional	97.34
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.32
COG3349	485	Uncharacterized conserved protein [Function unknow	97.32
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.31
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.28
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.26
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.25
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.24
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.22
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.2
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.2
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.16
PRK12831	464	putative oxidoreductase; Provisional	97.15
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.11
PLN02529	738	lysine-specific histone demethylase 1	97.01
PRK06475	400	salicylate hydroxylase; Provisional	96.99
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.98
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.97
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.94
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	96.89
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.87
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.87
PLN02612	567	phytoene desaturase	96.86
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.82
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.78
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.75
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.74
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.71
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.61
PLN02852	491	ferredoxin-NADP+ reductase	96.6
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.59
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	96.56
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.52
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.48
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	96.4
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.39
PLN03000	881	amine oxidase	96.39
PLN02976	1713	amine oxidase	96.38
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.34
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.22
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.22
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.2
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	96.19
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.14
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.14
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.13
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.04
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.01
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.0
PTZ00188	506	adrenodoxin reductase; Provisional	95.99
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.88
PRK14989	847	nitrite reductase subunit NirD; Provisional	95.84
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.79
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.74
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.64
PRK12831	464	putative oxidoreductase; Provisional	95.57
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.56
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.55
PRK13984	604	putative oxidoreductase; Provisional	95.49
PRK10262	321	thioredoxin reductase; Provisional	95.43
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.37
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.23
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	95.22
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.22
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	94.95
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	94.94
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	94.88
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	94.88
PRK14727	479	putative mercuric reductase; Provisional	94.87
KOG2403	642	consensus Succinate dehydrogenase, flavoprotein su	94.84
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	94.75
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	94.72
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.53
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	93.9
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.8
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	93.77
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	93.72
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	93.45
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	93.34
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	93.12
COG4716	587	Myosin-crossreactive antigen [Function unknown]	92.81
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	92.81
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	92.57
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	92.51
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	92.34
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	92.28
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.62
COG0569	225	TrkA K+ transport systems, NAD-binding component [	90.05
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	89.96
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	89.88
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	89.64
KOG2755	334	consensus Oxidoreductase [General function predict	89.59
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.38
PRK07846	451	mycothione reductase; Reviewed	89.22
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	89.05
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	88.96
TIGR02053	463	MerA mercuric reductase. This model represents the	88.95
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	88.81
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	88.77
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	88.67
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	88.48
PRK06370	463	mercuric reductase; Validated	88.22
PF10518	26	TAT_signal: TAT (twin-arginine translocation) path	88.17
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.07
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	87.99
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	87.93
PRK14989	847	nitrite reductase subunit NirD; Provisional	87.63
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	87.57
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.46
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	87.41
PRK13512	438	coenzyme A disulfide reductase; Provisional	87.33
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	87.04
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	86.94
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	86.9
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	86.88
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	86.46
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	86.36
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	85.9
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	85.79
PTZ00153	659	lipoamide dehydrogenase; Provisional	85.64
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	85.63
PRK04148	134	hypothetical protein; Provisional	85.38
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.23
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	85.22
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	85.18
PTZ00058	561	glutathione reductase; Provisional	85.14
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	85.12
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	85.09
PLN02507	499	glutathione reductase	84.85
PRK07845	466	flavoprotein disulfide reductase; Reviewed	84.84
PRK06116	450	glutathione reductase; Validated	84.72
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	84.53
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	84.11
PLN02546	558	glutathione reductase	83.91
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	83.91
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	83.82
PRK13748	561	putative mercuric reductase; Provisional	83.79
PRK06719	157	precorrin-2 dehydrogenase; Validated	83.58
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	83.41
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	82.97
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.96
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.94
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.69
PRK14694	468	putative mercuric reductase; Provisional	82.68
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.62
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	82.49
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	82.44
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	82.41
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	82.18
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	81.75
PRK12770	352	putative glutamate synthase subunit beta; Provisio	81.52
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	81.49
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	81.34
PRK15116	268	sulfur acceptor protein CsdL; Provisional	80.83
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	80.71
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	80.71
PTZ00052	499	thioredoxin reductase; Provisional	80.62
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	80.39
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	80.25

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=1.4e-80  Score=657.39  Aligned_cols=514  Identities=61%  Similarity=1.032  Sum_probs=400.8

Q ss_pred             ccccccCCCCccccccccCCC----------CCCccEEEECCCcchHHHHHhhhcCCeEEEEcCCCCCCCCCCcccchhh
Q 009241           24 CACQKAAPNYSFMRNATAAKP----------VSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSF   93 (539)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~----------~~~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~~~~~~~~~~~~~~   93 (539)
                      |...-.+..++|+.+++..+.          ..+|||||||+|.+||++|.+|+++.+|||||+|+.+...+.......+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~IIVG~G~aG~~lA~~Ls~~~~VLllE~G~~~~~~~~~~~~~~~  101 (587)
T PLN02785         22 GKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDSAYDYIVVGGGTAGCPLAATLSQNFSVLLLERGGVPFGNANVSFLENF  101 (587)
T ss_pred             ccccCCccCCchhhccccccccccccccccccccCCEEEECcCHHHHHHHHHHhcCCcEEEEecCCCCCCCchhhhHHhh
Confidence            333344566788888877766          5679999999999999999999998899999999864333433333334


Q ss_pred             HhhhcCCCCCCCCccccCCCceeecCcccccchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCchhH
Q 009241           94 SAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQ  173 (539)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (539)
                      .....+|.+.+.+|....++.+.+.+||+|||+|++|+|.|.|+.+++++..||+|+.+.++|++.|+.+...+...++.
T Consensus       102 ~~~~~d~~~~~~~q~~~~~~~~~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~~GW~~~~~~~~~~~~e~~~~~~~~~~~~~  181 (587)
T PLN02785        102 HIGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQKAGWDAKLVNESYPWVERQIVHWPKVAPWQ  181 (587)
T ss_pred             CCcccccCCccccccccCCCceeccccceecchhhhcCeEEEeCCHHHhccCCCCcccccchHHHHhcccccCCCcChHH
Confidence            33445778888888888888899999999999999999999999999998889999999999999998765556677889


Q ss_pred             HHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEE
Q 009241          174 SALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGV  253 (539)
Q Consensus       174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV  253 (539)
                      ..+.+++.++|+.+.++...+...+...+.++++..|.|+++..+++.+.+.|++|++++.|++|++++++ ..++++||
T Consensus       182 ~~~~~a~~e~G~~~~n~~~~d~~~G~~~g~~i~~~~g~R~saa~l~~~~~~~nl~Vl~~a~V~rIl~~~~~-~~~ra~GV  260 (587)
T PLN02785        182 AALRDSLLEVGVSPFNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPNKLRVLLHATVQKIVFDTSG-KRPRATGV  260 (587)
T ss_pred             HHHHHHHHHcCCCccCCCCCCCccceeeeEEEeCCCCEEcCHHHHHhhcCCCCeEEEeCCEEEEEEEcCCC-CCceEEEE
Confidence            99999999999987776655655555666666667789998888777777899999999999999998642 12389999


Q ss_pred             EEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCCcc
Q 009241          254 VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPV  333 (539)
Q Consensus       254 ~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~~~  333 (539)
                      ++.+.+|..+++.+...++++||||||+|+||+|||+|||||+++|+++||+++.|+|.||+||+||++..+.+..+.+.
T Consensus       261 ~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~~i~~~~~~~~  340 (587)
T PLN02785        261 IFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMNSIFVPSKAPV  340 (587)
T ss_pred             EEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCcccceEEEeCCCc
Confidence            99876776554432212468999999999999999999999999999999999999999999999999998887765543


Q ss_pred             chhhHHhhhccccchhhhccCCC----------------CCC------CCCC---------------CCCCCcceEEEEe
Q 009241          334 EVSLIQVVGITQFGSYIEGASGV----------------NFA------GGSP---------------SPRPYRGGFIFEK  376 (539)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~g~----------------~~~------~~~~---------------~~~~~~~~~~~~~  376 (539)
                      .....+..+....+.|.+...+.                ...      +...               ....+....++..
T Consensus       341 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (587)
T PLN02785        341 EQSLIQTVGITKMGVYIEASSGFGQSPDSIHCHHGIMSAEIGQLSTIPPKQRTPEAIQAYIHRKKNLPHEAFNGGFILEK  420 (587)
T ss_pred             hhhhHhhhhhhccccceecccccccCchhhhhhccccccccccccccCcccccchhhhhhccCcccccccccccceEEEE
Confidence            32222222222222221111000                000      0000               0001111345567


Q ss_pred             ecCcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccch-hHHhhhhccCCCCCCCC
Q 009241          377 IIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMS-VETLLNMTASMPLNLLP  455 (539)
Q Consensus       377 ~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  455 (539)
                      +..|.|||+|+|.++||.+.|.|+++|+.++.|++.+.++++.+++++++..++++...+.. ..+++......+.+..|
T Consensus       421 l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  500 (587)
T PLN02785        421 IAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKANINLIP  500 (587)
T ss_pred             ecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccccccCC
Confidence            78999999999999999999999999999999999999999999999998887766432211 11122211111222344


Q ss_pred             CCCCCHHHHHHHHHhccCCCcccccccccccccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhh
Q 009241          456 KHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER  535 (539)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~~  535 (539)
                      ...++++++++|++....+.||++|||+||+|||+++||||++||||||+||||..|++||++|+||+|+|+|++|++++
T Consensus       501 ~~~~~d~~l~~~ir~~~~t~~H~~GTc~MG~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~~  580 (587)
T PLN02785        501 KHTNDTKSLEQFCKDTVITIWHYHGGCHVGKVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRER  580 (587)
T ss_pred             CCCCCHHHHHHHHHHhcccccCCcccccCCCeECCCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhc
Q 009241          536 LAS  538 (539)
Q Consensus       536 ~~~  538 (539)
                      +++
T Consensus       581 ~~~  583 (587)
T PLN02785        581 LGR  583 (587)
T ss_pred             hhh
Confidence            875

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=100.00  E-value=4.8e-78  Score=611.83  Aligned_cols=479  Identities=42%  Similarity=0.600  Sum_probs=365.6

Q ss_pred             cccccccCCCCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCCCCCCcccchhhHh----hhcCCCCCCCCcc
Q 009241           35 FMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSA----ELADLSPTSPSQR  108 (539)
Q Consensus        35 ~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  108 (539)
                      ++.+....+...+||+||||||.|||++|.+|+|  ..+|||||+|+.+   +...+++.+..    ...+|.|.+.++.
T Consensus        45 ~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~---~~~~~~p~~~~~~q~s~~dw~y~t~Ps~  121 (623)
T KOG1238|consen   45 RPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP---PLYSDPPLLAANLQLSLYDWSYHTEPSQ  121 (623)
T ss_pred             ccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC---cccccchHHHHHhccccccccCcCccCh
Confidence            4455555556778999999999999999999999  6999999999976   23333333333    3347888877775


Q ss_pred             c----cCCCceeecCcccccchhhhccceeecCChhhHh----c--CCCCHHHHhhhhhhhhcccccCCCCch-------
Q 009241          109 F----ISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAR----E--AGWDGRLVNESYQWVEKKVVFRPPMQR-------  171 (539)
Q Consensus       109 ~----~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~----~--~gw~~~~~~~~~~~~~~~~~~~~~~~~-------  171 (539)
                      .    ..++...++|||++||+|.+|+|+|.|++..||+    .  .||+++++.+||++.|+.....+...+       
T Consensus       122 ~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~  201 (623)
T KOG1238|consen  122 HACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGP  201 (623)
T ss_pred             hhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCc
Confidence            5    7888899999999999999999999999954443    3  569999999999999987655444332       


Q ss_pred             -----------hHHHHHHHHHHcCCCCCCCCccCCCCceeeeeee---ecCCCcccchhh-hhh--hcCCCCcEEEcCcE
Q 009241          172 -----------WQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTI---IDQNSQRHTAAD-LLE--YANPSGLTVLLHAS  234 (539)
Q Consensus       172 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~g~r~~~~~-~l~--~~~~~gv~i~~~t~  234 (539)
                                 ....+.++..+.|...     .|.++..+.+..+   ...+|.|.+... ++.  ...++|+.+..++.
T Consensus       202 ~~ve~~~~~~~~~~~~~~ag~e~G~~~-----~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~  276 (623)
T KOG1238|consen  202 LLVEAGVYPNNLFTAFHRAGTEIGGSI-----FDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAA  276 (623)
T ss_pred             ceeccccccCchhhHhHHhHHhcCCCc-----cCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccce
Confidence                       3455666666676331     1222222222222   235777777654 655  33367999999999


Q ss_pred             EEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccC
Q 009241          235 VHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVG  314 (539)
Q Consensus       235 V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG  314 (539)
                      |++|.+|..+   .++.||++....|+.++++    +.|+||||||+|+||+|||+|||||+++|++.||+++.++|.||
T Consensus       277 vtrvl~D~~~---~~a~gv~~~~~~~~~~~v~----a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG  349 (623)
T KOG1238|consen  277 VTRVLIDPAG---KRAKGVEFVRDGGKEHTVK----ARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVG  349 (623)
T ss_pred             EEEEEEcCCC---ceEEEEEEEecCceeeeec----ccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccc
Confidence            9999999664   4999999987437888877    78999999999999999999999999999999999999999999


Q ss_pred             ccCccCCCCeEEeeCCCccchhhHHhhhccccchhhhccCCCCCC-----------------CCCC------------C-
Q 009241          315 QGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFA-----------------GGSP------------S-  364 (539)
Q Consensus       315 ~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~------------~-  364 (539)
                      +||+||++..++...+.+......+..++.....|+...+|+...                 .+++            . 
T Consensus       350 ~nLqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~G~~~~~~~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~  429 (623)
T KOG1238|consen  350 QNLQDHPMNPGFVFSTNPVELSLIRLVGITTVGQYLEGGSGPLASPGVETLGFINTVSSNLSLDWPDIELHFVAGSLSSD  429 (623)
T ss_pred             cccccccccceeeecCCCccccccccccchHHHHHHHcCCCCcccCcceeeEEeccccccCcCCCCCeeEEecccccccc
Confidence            999999999887776655433332222222222222221111100                 0000            0 


Q ss_pred             --------C-----------CCCcceEEEEeecCcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHc
Q 009241          365 --------P-----------RPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIE  425 (539)
Q Consensus       365 --------~-----------~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~  425 (539)
                              .           .......|+..+.+|.|+|+|.|+++||.+.|+|+++|+.+|+|++.+.++++.+.++.+
T Consensus       430 ~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~  509 (623)
T KOG1238|consen  430 GLTALRKALGEIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLRSTNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSN  509 (623)
T ss_pred             chhhhhhhcchHHHHhhhhhhcCceeEEeehhcCCCccceEEecCCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHc
Confidence                    0           001125567788999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc------cccCCCCcEeccCC
Q 009241          426 SKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDA  499 (539)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg------~VvD~~~rv~g~~n  499 (539)
                      +..|+++......        .+.|.+.. ....+++++++|+|.+..+.||++|||+||      .|||+++||||++|
T Consensus       510 s~af~~~~~r~~~--------~~~~~c~~-~~~~sd~yw~c~~R~~~~TiyH~~GtckMGp~~D~~aVVD~~lrV~Gv~~  580 (623)
T KOG1238|consen  510 SKAFQRFGARLWK--------KPVPGCDL-LAFLSDAYWECFCRHTVVTIYHYSGTCKMGPSSDPTAVVDPQLRVHGVRG  580 (623)
T ss_pred             CHHHHHhcchhcc--------ccCCCccc-ccCCCHHHHHHHHHhccceeeccCCceEeCCccCCCcccCCcceeccccC
Confidence            9988887755421        11122111 125689999999999999999999999999      89999999999999


Q ss_pred             ceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhh
Q 009241          500 LRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLA  537 (539)
Q Consensus       500 L~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~~~~  537 (539)
                      |||+|||+||.+|++||+.|+||+|+|+||.|+++...
T Consensus       581 LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~  618 (623)
T KOG1238|consen  581 LRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLA  618 (623)
T ss_pred             ceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999977776554

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=1.8e-69  Score=578.47  Aligned_cols=465  Identities=28%  Similarity=0.405  Sum_probs=342.0

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCC-CCCCcccchhhHhh----hcCCCCCCCCccccCCCcee
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPY-GNPNITNSGSFSAE----LADLSPTSPSQRFISEDGVV  116 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  116 (539)
                      ++.+|||||||||++|+++|.+|++  |.+|||||+|+... .......+..+...    ..+|.|.+.++....++.+.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~   81 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPHMNNRRME   81 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCCCCCCeee
Confidence            4567999999999999999999999  89999999997532 11222222211111    12455666677777777888


Q ss_pred             ecCcccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhccccc-------------C---CCCchhH
Q 009241          117 STRARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVF-------------R---PPMQRWQ  173 (539)
Q Consensus       117 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~  173 (539)
                      +.+|++|||+|.+|++.+.|+.+.+|+.       .+|+|+++++||+++|+...-             .   ....+..
T Consensus        82 ~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~~~~~~g~~gp~~~~~~~~~~~~~~  161 (560)
T PRK02106         82 CPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGGEDDYRGGDGPLSVTRGKPGTNPLF  161 (560)
T ss_pred             cccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCCCccccCCCCCEEEeCCCCCCCHHH
Confidence            9999999999999999999999987653       479999999999999976510             0   1224456


Q ss_pred             HHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEE
Q 009241          174 SALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAH  251 (539)
Q Consensus       174 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~  251 (539)
                      +.+.++++++|++...........++..... ...+|.|+++.. |++ ..++.|++|++++.|++|+++++     +++
T Consensus       162 ~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~-~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~~-----~a~  235 (560)
T PRK02106        162 QAFVEAGVQAGYPRTDDLNGYQQEGFGPMDR-TVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEGK-----RAV  235 (560)
T ss_pred             HHHHHHHHHcCCCcCCCCCCCCCceeEEEee-ecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeCC-----eEE
Confidence            7788889999987543221111111111111 124677877654 666 44578899999999999999854     999


Q ss_pred             EEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCC
Q 009241          252 GVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV  331 (539)
Q Consensus       252 gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~  331 (539)
                      ||++.+.++ ...+.    ++|+||||||+++||+|||+||||++++|+++||+++.++|.||+||+||+...+.+..+.
T Consensus       236 GV~~~~~~~-~~~~~----~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~~~~~~~~~  310 (560)
T PRK02106        236 GVEYERGGG-RETAR----ARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEVYIQYECKQ  310 (560)
T ss_pred             EEEEEeCCc-EEEEE----eeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccceEEEEeCC
Confidence            999987544 33333    6899999999999999999999999999999999999999999999999999887776544


Q ss_pred             ccchh-----h------HHhhhccccc----------hhhhccCCCCC-------CCC-CCC--CCC--CcceEEEEeec
Q 009241          332 PVEVS-----L------IQVVGITQFG----------SYIEGASGVNF-------AGG-SPS--PRP--YRGGFIFEKII  378 (539)
Q Consensus       332 ~~~~~-----~------~~~~~~~~~~----------~~~~~~~g~~~-------~~~-~~~--~~~--~~~~~~~~~~~  378 (539)
                      +....     .      .++. ....+          .|.....+..+       .+. ...  ...  .....+...+.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (560)
T PRK02106        311 PVSLYPALKWWNKPKIGAEWL-FTGTGLGASNHFEAGGFIRSRAGVDWPNIQYHFLPVAIRYDGSNAVKGHGFQAHVGPM  389 (560)
T ss_pred             CcccccccchhhhhHHHHHHH-hcCCCCccccccceeeEEecCCCCCCCCeEEEEeeccccccCCCCCCCCeEEEEEEec
Confidence            32110     0      0000 00000          01111000000       000 000  000  11223334567


Q ss_pred             CcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCC
Q 009241          379 GPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHS  458 (539)
Q Consensus       379 ~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (539)
                      .|.|+|+|+|+++|+++.|.|+++|+.++.|++.+.++++.+++++++++++.+...+..           |+    ...
T Consensus       390 ~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------p~----~~~  454 (560)
T PRK02106        390 RSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREIS-----------PG----ADV  454 (560)
T ss_pred             CCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccccC-----------CC----ccc
Confidence            899999999999999999999999999999999999999999999998877654322210           11    123


Q ss_pred             CCHHHHHHHHHhccCCCcccccccccc----cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241          459 NTSTSLEQFCRDTVMTIWHYHGGCQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~H~~Gt~~mg----~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~  534 (539)
                      ++++++++|++....+++|++||||||    +|||++|||||++||||+|+||||+.+++||++||||+|+|+||+|+++
T Consensus       455 ~~~~~~~~~i~~~~~~~~H~~GTcrMG~d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~  534 (560)
T PRK02106        455 QTDEEIDAFVREHAETAYHPSCTCKMGTDPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGR  534 (560)
T ss_pred             CCHHHHHHHHHhccCcCcccCCCeecCCCCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhcc
Confidence            578889999999888999999999999    6999999999999999999999999999999999999999999988875


Q ss_pred             h
Q 009241          535 R  535 (539)
Q Consensus       535 ~  535 (539)
                      .
T Consensus       535 ~  535 (560)
T PRK02106        535 T  535 (560)
T ss_pred             C
Confidence            3

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=8.4e-69  Score=570.45  Aligned_cols=459  Identities=28%  Similarity=0.413  Sum_probs=338.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCCC-CCCcccchhhHh----hhcCCCCCCCCccccCCCceeecCcc
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPYG-NPNITNSGSFSA----ELADLSPTSPSQRFISEDGVVSTRAR  121 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~  121 (539)
                      ||||||||++|+++|.+|++ + .+|||||+|+.... ......+..+..    ...+|.|.+.++....++.+.+.+|+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~   80 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPHMNNRRVGHARGK   80 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCCCCCceEeeeccc
Confidence            89999999999999999999 7 69999999985321 122222221111    11245566777777778889999999


Q ss_pred             cccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhccccc---------------CCCCchhHHHHHHH
Q 009241          122 VLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVF---------------RPPMQRWQSALRDG  179 (539)
Q Consensus       122 ~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~  179 (539)
                      +|||+|.+|++.+.|+.+.+|+.       .+|+|+++.+||+++|..+..               .+...+..+.+.++
T Consensus        81 ~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~~~~~g~~G~~~v~~~~~~~~~~~~~~~a  160 (532)
T TIGR01810        81 VLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGEKPYRGHDGPIKVRRGPADNPLFQAFIEA  160 (532)
T ss_pred             ccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCCcccCCCCCCEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999976543       379999999999999976541               11224456778888


Q ss_pred             HHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhhh-cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe
Q 009241          180 LVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLEY-ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD  257 (539)
Q Consensus       180 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~-~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~  257 (539)
                      ++++|++...........++......+ .+|.|+++.. |++. .++.|++|+++++|++|+++++     +++||++.+
T Consensus       161 ~~~~G~~~~~~~~~~~~~g~~~~~~~~-~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~-----ra~GV~~~~  234 (532)
T TIGR01810       161 GVEAGYNKTPDVNGFRQEGFGPMDSTV-HNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGN-----RATGVEFKK  234 (532)
T ss_pred             HHHcCCCccCCCCCCCccceEEEEEEc-CCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCC-----eEEEEEEEe
Confidence            899998754322211111111111111 4677877654 6664 4477999999999999999854     999999986


Q ss_pred             CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCCccchh-
Q 009241          258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVS-  336 (539)
Q Consensus       258 ~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~~~~~~-  336 (539)
                      . +....+.    ++|+||||||+++||+||++||||++++|+++||+++.++|.||+|||||+...+.+..+.+.... 
T Consensus       235 ~-~~~~~~~----~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~~~~~~~~~~~~~~~  309 (532)
T TIGR01810       235 G-GRKEHTE----ANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEVYVQHACKQPVSLYP  309 (532)
T ss_pred             C-CcEEEEE----EeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccceeEEEecCCccccc
Confidence            3 3333333    689999999999999999999999999999999999999999999999999988877655432110 


Q ss_pred             hH----------Hhh----hc---cc--cchhhhccCCCCCCCCC-----------CCCCC--CcceEEEEeecCcCcce
Q 009241          337 LI----------QVV----GI---TQ--FGSYIEGASGVNFAGGS-----------PSPRP--YRGGFIFEKIIGPVSTG  384 (539)
Q Consensus       337 ~~----------~~~----~~---~~--~~~~~~~~~g~~~~~~~-----------~~~~~--~~~~~~~~~~~~p~s~g  384 (539)
                      ..          ++.    +.   ..  ...|.....+..+ ++.           .....  .....+......|.|+|
T Consensus       310 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~srG  388 (532)
T TIGR01810       310 SLNWLKQPFIGAQWLFGRKGAGASNHFEGGGFVRSNDDVDY-PNIQYHFLPVAIRYDGTKAPKAHGFQVHVGPMYSNSRG  388 (532)
T ss_pred             ccchhhhhHHHHHHHhcCCCCccccccceeEEEecCCCCCC-CCeEEEEEeeeeccCCCCCCCCCcEEEEEeecCCCCce
Confidence            00          000    00   00  0001111000000 000           00000  01123334567899999


Q ss_pred             EEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHH
Q 009241          385 HLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSL  464 (539)
Q Consensus       385 ~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (539)
                      +|+|+++||++.|.|+++|+.++.|++.+.++++.+++++++.+++.+...+..           |+    ...++++++
T Consensus       389 ~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------p~----~~~~~d~~~  453 (532)
T TIGR01810       389 HVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEIS-----------PG----PEVQTDEEI  453 (532)
T ss_pred             EEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhccccccC-----------CC----CCCCCHHHH
Confidence            999999999999999999999999999999999999999988777665322211           11    234688999


Q ss_pred             HHHHHhccCCCcccccccccc------cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241          465 EQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       465 ~~~~~~~~~~~~H~~Gt~~mg------~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~  534 (539)
                      ++|++....+.+|++||||||      +|||+++||||++||||||+||||+.+++||++|+||+|+|+||.|+++
T Consensus       454 ~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~  529 (532)
T TIGR01810       454 DEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK  529 (532)
T ss_pred             HHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999998      4999999999999999999999999999999999999999999988864

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=5.1e-62  Score=513.42  Aligned_cols=465  Identities=27%  Similarity=0.364  Sum_probs=346.6

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhc----CCCCCCCCccccCCCceeec
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELA----DLSPTSPSQRFISEDGVVST  118 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  118 (539)
                      +..+||+||||+|.+|+++|.+|++ |.+|+|||+|+..... ....+..+.....    +|.+.+.++.+..++.+.+.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~   82 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGPDRRP-LIQMPAAYAFLMNGPRYDWGFRTEPEPHLRGRELAWP   82 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCCCCcc-ceecchhHhhhccCcccCCccccCcccCCCCcccccc
Confidence            4568999999999999999999999 9999999999753221 2333333433332    47778878888889999999


Q ss_pred             CcccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhcccccC--------C-----------CCchh
Q 009241          119 RARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVFR--------P-----------PMQRW  172 (539)
Q Consensus       119 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~--------~-----------~~~~~  172 (539)
                      ++++|||+|.+|++.+.|+.+.+|+.       .+|+++++.|||+++|+.....        .           ...+.
T Consensus        83 rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~~~~  162 (542)
T COG2303          83 RGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPI  162 (542)
T ss_pred             ccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCchHH
Confidence            99999999999999999999987743       4599999999999999754431        1           11235


Q ss_pred             HHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeE
Q 009241          173 QSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVA  250 (539)
Q Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v  250 (539)
                      .+.+.++.+++|++....+......++...+... .+|.|++... +++ ..++.|++|++++.|++|+++++     |+
T Consensus       163 ~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~-~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~~-----r~  236 (542)
T COG2303         163 ARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTI-CNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEGD-----RA  236 (542)
T ss_pred             HHHHHHHHHHcCCCcCcccccCCCCCcccceeec-cCCeEeechhhcchhHhcCCceEEecCCEEEEEEEECC-----ee
Confidence            6677777788898755432221111211111222 3777777654 666 57788999999999999999998     99


Q ss_pred             EEEEEEeCCCC-eEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeC
Q 009241          251 HGVVFRDATDA-EHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPS  329 (539)
Q Consensus       251 ~gV~~~~~~g~-~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~  329 (539)
                      +||++...++. .....    +++.||||||+|+||+||++||||+...+..+|+.++.++|.||+|||||....+.+..
T Consensus       237 ~gv~~~~~~~~~~~~~~----a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~~~~~~~  312 (542)
T COG2303         237 VGVEVEIGDGGTIETAV----AAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEIYVAFEA  312 (542)
T ss_pred             EEEEEEeCCCCceEEEe----cCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhhhhheec
Confidence            99999864432 22333    68999999999999999999999999999999999999999999999999988776655


Q ss_pred             CCccchhhHHhhhccccc--hhhhccC----------C-----CCC-CCCCC-----------CCCCCcceEEEEeecCc
Q 009241          330 PVPVEVSLIQVVGITQFG--SYIEGAS----------G-----VNF-AGGSP-----------SPRPYRGGFIFEKIIGP  380 (539)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~--~~~~~~~----------g-----~~~-~~~~~-----------~~~~~~~~~~~~~~~~p  380 (539)
                      ..+..............+  .|.....          +     ... .++.+           .........+.....+|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~gf~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp  392 (542)
T COG2303         313 TEPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFVRSGPAGEYPDGQYHFAPLPLAIRAAGAEHGFTLHVGPMRP  392 (542)
T ss_pred             cCccccccccccccccccceeEEeecCCCcccccccccccccCccccCCCcccccccccccccccccCCccEEeeccCCC
Confidence            443311111000000000  0111000          1     000 00000           01122344555667899


Q ss_pred             CcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCC
Q 009241          381 VSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNT  460 (539)
Q Consensus       381 ~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (539)
                      .++|.|.+++.|+...|.|+++|..++.|+..+..+++..++++....+......+..           |+    ...++
T Consensus       393 ~srg~v~~~~~d~~~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~~-----------~~----~~~~~  457 (542)
T COG2303         393 KSRGSVTLRSPDPDNRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAELA-----------PG----PRVTT  457 (542)
T ss_pred             ccccceecCCCCCcCCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhhc-----------CC----Ccccc
Confidence            9999999999999999999999999999999999999999999986544444433311           11    23466


Q ss_pred             HHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241          461 STSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       461 ~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~  534 (539)
                      ++++..|++....+.+|++||||||     +|+|++|||||++||||+|+|+||+++++||++||+|||+|+||+|+++
T Consensus       458 ~~~~~~~~~~~~~t~~H~~GT~rMG~Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~  536 (542)
T COG2303         458 DEDISAAIRFLARTAYHPMGTCRMGSDPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD  536 (542)
T ss_pred             HHHHHHHHHhccCccccccccccCCCCchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence            7789999999999999999999999     3555999999999999999999999999999999999999999999873

>TIGR02462 pyranose_ox pyranose oxidase

Probab=100.00  E-value=3.5e-49  Score=409.39  Aligned_cols=436  Identities=16%  Similarity=0.145  Sum_probs=275.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCC---------cc-cchhhHhhhcC-CCCCCC----------
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPN---------IT-NSGSFSAELAD-LSPTSP----------  105 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~---------~~-~~~~~~~~~~~-~~~~~~----------  105 (539)
                      |||||||+|++|+++|+.|++ |.+|+|||++........         .+ ....|...++. ..+.+.          
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPTL   80 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCCC
Confidence            799999999999999999999 999999999986542110         00 11122222210 000000          


Q ss_pred             -C--------ccccC-C-----C---cee-ecCcccccchhhhccceeecCChhhHhc--CCCCH--HHHhhhhhhhhcc
Q 009241          106 -S--------QRFIS-E-----D---GVV-STRARVLGGGTCINAGFYTRAEPYYARE--AGWDG--RLVNESYQWVEKK  162 (539)
Q Consensus       106 -~--------~~~~~-~-----~---~~~-~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~gw~~--~~~~~~~~~~~~~  162 (539)
                       +        ...+. +     +   .+. ..+-+.+||+|.+|++.+.|..++....  .+|++  +++++||+++|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r~g~~~dWPI~y~eL~PyY~~Ae~~  160 (544)
T TIGR02462        81 DPTAWSASIESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREERPKLSDDAAEDDAEWDRLYTKAESL  160 (544)
T ss_pred             CccccccCCCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence             0        00000 0     0   111 3456899999999999999998853221  46874  8999999999999


Q ss_pred             cccCCCC--chh--HHHHHHHHHHc-CC-CCCCC-CccCCCCceeeeeeeecCCCcccchh-hhhh-----hcCCCCcEE
Q 009241          163 VVFRPPM--QRW--QSALRDGLVEV-GV-LPYNG-FTYDHLYGTKIGGTIIDQNSQRHTAA-DLLE-----YANPSGLTV  229 (539)
Q Consensus       163 ~~~~~~~--~~~--~~~~~~~~~~~-g~-~~~~~-~~~~~~~~~~~~~~~~~~~g~r~~~~-~~l~-----~~~~~gv~i  229 (539)
                      +++.+..  .+.  ...+....+++ |. ..... ..+.. .+|.        .+.+++.. +.++     .+...|++|
T Consensus       161 ~gv~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~PlA~~~-~~c~--------~~ak~s~~~t~~~~~~~~~~~~~n~~l  231 (544)
T TIGR02462       161 IGTSTDQFDESIRHNLVLRKLQDEYKGQRDFQPLPLACHR-RTDP--------TYVEWHSADTVFDLQPNDDAPSERFTL  231 (544)
T ss_pred             hCCCCCcCCCcccchhHHHHHHHHhccccccccCchhhhc-cCCC--------ccceecCCccchhhhhhhhccCCCEEE
Confidence            8876531  111  11111222222 22 11110 00000 0111        12233221 2222     224678999


Q ss_pred             EcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCccee
Q 009241          230 LLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVL  308 (539)
Q Consensus       230 ~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~  308 (539)
                      ++++.|++|+.++++  ..+|++|++.+. +|+.+++.     |+.||||||+++||||||+|+++...  .+.|+....
T Consensus       232 ~~~a~v~~i~~d~~~--~~~v~~v~~~d~~~g~~~~v~-----A~~vVLAagaIetpRLLL~S~~~~~~--~p~gl~Nss  302 (544)
T TIGR02462       232 LTNHRCTRLVRNETN--ESEIEAALVRDLLSGDRFEIK-----ADVYVLACGAVHNPQILVNSGFGQLG--RPDPTNPPP  302 (544)
T ss_pred             EcCCEEEEEEeCCCC--CceeEEEEEEECCCCcEEEEE-----CCEEEEccCchhhHHHHHhCCCCCCc--CCCCcCCCC
Confidence            999999999998642  128999999986 56665554     89999999999999999999987433  223333221


Q ss_pred             cCcccCccCccCCCCeEEeeCCCccchhhHHhhh-ccc----cchhhhcc-C--------------------CCCCCCCC
Q 009241          309 DQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVG-ITQ----FGSYIEGA-S--------------------GVNFAGGS  362 (539)
Q Consensus       309 ~~~~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~-~--------------------g~~~~~~~  362 (539)
                      .++.||||||||+...+.+.++++....+..... ...    ...+.... .                    +..|....
T Consensus       303 ~~g~VGRnlmdh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~w~~~~  382 (544)
T TIGR02462       303 LLPSLGRYITEQSMTFCQIVLSTELVDSVRSDPRGLDWWKEKVANHMMKHPEDPLPIPFRDPEPQVTTPFTEEHPWHTQI  382 (544)
T ss_pred             CCCCCCcchhcCCCccEEEEecchhhhhccCCccccccccccchhhhccccCCcccccccccCcccccccccccccchhh
Confidence            2479999999999887766555432110000000 000    00000000 0                    00011000


Q ss_pred             CC--------------CCCCcceEEEEeecCcCcceEEEecC--CCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHcc
Q 009241          363 PS--------------PRPYRGGFIFEKIIGPVSTGHLELRT--RNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIES  426 (539)
Q Consensus       363 ~~--------------~~~~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~  426 (539)
                      ..              ........+.+.  .|...++|+|++  +|.+|.|.+++.|..+++|++.++.+.+.+.++++.
T Consensus       383 ~~~~~~~g~~~~~~~~~~~v~l~~~~e~--lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~  460 (544)
T TIGR02462       383 HRDAFSYGAVGPSIDSRVIVDLRFFGRT--EPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAK  460 (544)
T ss_pred             hhhhhhcccccccccccceeeEEEEecc--CCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence            00              000111223333  477788899965  699999999999999999999999999999999988


Q ss_pred             ccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCce
Q 009241          427 KSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALR  501 (539)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~  501 (539)
                      ++.......                   +          .+  .....+.|++||||||     +|||++|||||++|||
T Consensus       461 ~G~~~~~~~-------------------~----------~~--~~~~~~~H~~Gt~rMG~dp~~sVvd~~~rv~g~~NL~  509 (544)
T TIGR02462       461 IGGYLPGSL-------------------P----------QF--MEPGLALHLAGTTRIGFDEQTTVANTDSKVHNFKNLY  509 (544)
T ss_pred             cCCCccccc-------------------c----------cc--cCCCccccCCCCeecCCCCCCceECCCCcEeCCCCeE
Confidence            764311100                   0          00  0124578999999999     7999999999999999


Q ss_pred             EeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241          502 VVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       502 V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~  534 (539)
                      |+|+|+||+.+++||++||||+|+|+|++|+++
T Consensus       510 V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~  542 (544)
T TIGR02462       510 VGGNGNIPTAFGANPTLTSMCYAIKSAEYIINN  542 (544)
T ss_pred             EeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998864

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=2.9e-41  Score=334.22  Aligned_cols=263  Identities=34%  Similarity=0.499  Sum_probs=183.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCCCCCCcccchhhHhhh---cCCCCCCCCccccCCCceeecCccc
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPYGNPNITNSGSFSAEL---ADLSPTSPSQRFISEDGVVSTRARV  122 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~  122 (539)
                      |||||||||++|+++|.+|++ | .+|||||+|+...... ...........   .++.+.+.++....++.+.+.+|++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~   79 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED-STPPSSFYQDFDSEYDWGYYSGPQPFLNGRTINWPRGKG   79 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG-HHGGGGGGGCTTTTTBBGEEECEEECTTTTSEEEEEB-S
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc-chhhhccccccCcccccccccccccccccceeeeeccee
Confidence            899999999999999999999 6 6999999999765433 00001111101   1223444555666777788889999


Q ss_pred             ccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhcc-------------ccc---CCCCchhHHHHHHH
Q 009241          123 LGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKK-------------VVF---RPPMQRWQSALRDG  179 (539)
Q Consensus       123 lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~-------------~~~---~~~~~~~~~~~~~~  179 (539)
                      |||+|.+|++.+.|+.+.+++.       .+|.++++.++|+++|..             +.+   .+...+..+.+.++
T Consensus        80 lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~a  159 (296)
T PF00732_consen   80 LGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPSSDLHGVDGPLPVSSSPPYPSPMNQALMDA  159 (296)
T ss_dssp             TTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTBGGGSCBSSSEEEHHHCSCHCTHHHHHHHH
T ss_pred             cCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhccccccccccccccccccccCCCCHHHHHHHHH
Confidence            9999999999999999876553       358899999999999933             222   22334556888899


Q ss_pred             HHHcCCCCCCCC-ccCCCCceeeeeeeecCCCcccchh-hhhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEE
Q 009241          180 LVEVGVLPYNGF-TYDHLYGTKIGGTIIDQNSQRHTAA-DLLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFR  256 (539)
Q Consensus       180 ~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~r~~~~-~~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~  256 (539)
                      ++++|++..... ....+..|..+.  ...+|.|+++. .|++ ..++.|++|+++|+|++|+++.++   .+++||++.
T Consensus       160 ~~~~G~~~~~~~~~~~~~g~~~~~~--~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~---~~a~gV~~~  234 (296)
T PF00732_consen  160 AEELGIPVPQDFNGCDPCGFCMTGF--NCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDG---GRATGVEYV  234 (296)
T ss_dssp             HHHTTHHBCSCTTSSTCSEEEECEE--CECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTS---TEEEEEEEE
T ss_pred             HHHcCCccccccccccccccccccc--cccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccc---cceeeeeee
Confidence            999998722221 121122222221  23678788764 4776 555569999999999999986332   399999999


Q ss_pred             eCCCC-eEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCC
Q 009241          257 DATDA-EHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNP  321 (539)
Q Consensus       257 ~~~g~-~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~  321 (539)
                      +.++. ...+.    ++|.||||||+++||+||++||||+..+|..+||+++.++| ||+||||||
T Consensus       235 ~~~~~~~~~~~----~ak~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lp-VG~nl~dH~  295 (296)
T PF00732_consen  235 DNDGGVQRRIV----AAKEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLP-VGRNLQDHP  295 (296)
T ss_dssp             ETTTSEEEEEE----EEEEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-T-TTECEB--E
T ss_pred             ecCCcceeeec----cceeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCc-chhchhccc
Confidence            87776 23333    58999999999999999999999999999999999999999 999999997

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.97  E-value=1.4e-31  Score=235.47  Aligned_cols=139  Identities=34%  Similarity=0.591  Sum_probs=110.4

Q ss_pred             cCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCC
Q 009241          380 PVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSN  459 (539)
Q Consensus       380 p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  459 (539)
                      |.|+|+|+|+++|+++.|.|+++|+.+++|++.+.++++.++++++.. ++++......+..       .+. .......
T Consensus         1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~-------~~~-~~~~~~~   71 (144)
T PF05199_consen    1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGP-------SPF-CPDASLD   71 (144)
T ss_dssp             -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCG-------CSC-CGCSTTT
T ss_pred             CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccc-------ccc-ccccccc
Confidence            789999999999999999999999999999999999999999999988 6555432211000       000 0112456


Q ss_pred             CHHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHH
Q 009241          460 TSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYM  527 (539)
Q Consensus       460 ~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~  527 (539)
                      +++++++|++....+.+|++||||||     +|||++|||||++||||+|+|+||+.+++||++|+||+|+|+
T Consensus        72 ~~~~~~~~~~~~~~~~~H~~Gt~~mG~~~~~~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra  144 (144)
T PF05199_consen   72 SDEDLECYIRQNVGTSWHPSGTCRMGPDPDTSVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA  144 (144)
T ss_dssp             CHHHHHHHHHHHGEECSS-BETT-BTSSTTTTSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred             cchhhhhheeeccceecccccceeccccCCceeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence            78899999999999999999999999     999999999999999999999999999999999999999996

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.72  E-value=1.7e-16  Score=167.91  Aligned_cols=191  Identities=17%  Similarity=0.200  Sum_probs=108.4

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV  122 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  122 (539)
                      ++.++||||||+|.+|++||+++++ |.+|+||||.+.                                          
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~------------------------------------------   95 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV------------------------------------------   95 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC------------------------------------------
Confidence            4568999999999999999999999 999999999875                                          


Q ss_pred             ccchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc---hh---HHHHHHHHHHcCCCCCCCCccCCC
Q 009241          123 LGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ---RW---QSALRDGLVEVGVLPYNGFTYDHL  196 (539)
Q Consensus       123 lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~~~~~~~~  196 (539)
                      +||++...++.+.-......+..+.. +..+.+|+...+......+..   .+   .....+++++.|+...... ..  
T Consensus        96 ~GG~s~~s~Gg~~~~~~~~~~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~-~~--  171 (506)
T PRK06481         96 AGGNTMKASSGMNASETKFQKAQGIA-DSNDKFYEETLKGGGGTNDKALLRYFVDNSASAIDWLDSMGIKLDNLT-IT--  171 (506)
T ss_pred             CCCcccccCCccccCChHHHHhcCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHHcCceEeecc-cC--
Confidence            45555544444333332222222221 112223332221111111000   00   1234566777776532100 00  


Q ss_pred             CceeeeeeeecCCCcccc---hhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCC
Q 009241          197 YGTKIGGTIIDQNSQRHT---AADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKN  273 (539)
Q Consensus       197 ~~~~~~~~~~~~~g~r~~---~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~  273 (539)
                      .+........+.++....   ...+...+++.|++|+++++|++|+.+++     +|+||.+...+++...+     .++
T Consensus       172 ~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g-----~V~Gv~~~~~~g~~~~i-----~a~  241 (506)
T PRK06481        172 GGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKDG-----KVTGVKVKINGKETKTI-----SSK  241 (506)
T ss_pred             CCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecCC-----EEEEEEEEeCCCeEEEE-----ecC
Confidence            000000011111221111   12244456678999999999999987654     89999987645544444     379


Q ss_pred             eEEEcCCCcccHHHHHh
Q 009241          274 EIIVSAGALGSPQLLML  290 (539)
Q Consensus       274 ~VVlAaG~~~sp~lLl~  290 (539)
                      .||||+|+|....-++.
T Consensus       242 ~VVlAtGG~~~n~~m~~  258 (506)
T PRK06481        242 AVVVTTGGFGANKDMIA  258 (506)
T ss_pred             eEEEeCCCcccCHHHHH
Confidence            99999999987654443

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.64  E-value=3.9e-15  Score=158.52  Aligned_cols=63  Identities=13%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      +...+++.|++|+++++|++|+.+++     +|+||.+.+ +|..+.+.    ++|.||||+|+|+...-|+.
T Consensus       223 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----a~kaVILAtGGf~~n~em~~  285 (564)
T PRK12845        223 LFAGVLRAGIPIWTETSLVRLTDDGG-----RVTGAVVDH-RGREVTVT----ARRGVVLAAGGFDHDMEMRW  285 (564)
T ss_pred             HHHHHHHCCCEEEecCEeeEEEecCC-----EEEEEEEEE-CCcEEEEE----cCCEEEEecCCccccHHHHH
Confidence            33456678999999999999997643     999998875 55555554    67899999999998765543

>PRK07121 hypothetical protein; Validated

Probab=99.63  E-value=6.8e-15  Score=155.69  Aligned_cols=194  Identities=20%  Similarity=0.259  Sum_probs=111.0

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV  122 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  122 (539)
                      ++.++||||||+|.+|+++|++|++ |.+|+||||.+.                                          
T Consensus        17 ~~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~------------------------------------------   54 (492)
T PRK07121         17 WDDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG------------------------------------------   54 (492)
T ss_pred             cCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC------------------------------------------
Confidence            3568999999999999999999999 999999999875                                          


Q ss_pred             ccchhhhccceeecC-ChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc---hh---HHHHHHHHHHcCCCCCCCCc---
Q 009241          123 LGGGTCINAGFYTRA-EPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ---RW---QSALRDGLVEVGVLPYNGFT---  192 (539)
Q Consensus       123 lGG~s~~~~~~~~r~-~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~~~~---  192 (539)
                      +||+|.+.++.++-. ........+.. ++.+.++++..+.........   .+   .....+++++.|++......   
T Consensus        55 ~gG~s~~sgG~~~~~~g~~~q~~~g~~-d~~~~~~~~~~~~~~~~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~  133 (492)
T PRK07121         55 AGGATALSGGVIYLGGGTAVQKAAGFE-DSPENMYAYLRVAVGPGVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEK  133 (492)
T ss_pred             CCCcccccCeEEEeCCCcHHHHhcCCC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCc
Confidence            567777766655432 22222223322 112222222211111111111   01   12344566777765321100   


Q ss_pred             --cC------CCCc----e---------eeeeeeecCCCc----ccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCC
Q 009241          193 --YD------HLYG----T---------KIGGTIIDQNSQ----RHTAADLLEYANPSGLTVLLHASVHKILFRNKGKAR  247 (539)
Q Consensus       193 --~~------~~~~----~---------~~~~~~~~~~g~----r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~  247 (539)
                        ++      ...+    .         ..+.. ....+.    +.....+...+++.|++|+++++|++|+.++++   
T Consensus       134 ~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g---  209 (492)
T PRK07121        134 TSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHR-VQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDG---  209 (492)
T ss_pred             ccCCCCCcccccchhhcchhhhhccCCccccee-cCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCC---
Confidence              00      0000    0         00000 000110    011122445667789999999999999987654   


Q ss_pred             CeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          248 PVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       248 ~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                       +|+||++.+ +++...+.    +++.||||+|++....-|+.
T Consensus       210 -~v~Gv~~~~-~~~~~~i~----a~k~VVlAtGg~~~N~em~~  246 (492)
T PRK07121        210 -RVVGVEARR-YGETVAIR----ARKGVVLAAGGFAMNREMVA  246 (492)
T ss_pred             -CEEEEEEEe-CCcEEEEE----eCCEEEECCCCcCcCHHHHH
Confidence             899999865 45555554    33999999999987666554

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.61  E-value=9.6e-15  Score=156.51  Aligned_cols=62  Identities=11%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             hhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          220 EYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       220 ~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      ..+++.|++|+++|+|++|+.++++    +|+||.+.. +++.+.+.    +++.||||||+|+...-|+.
T Consensus       221 ~~~~~~gv~i~~~~~~~~Li~d~~g----~V~Gv~~~~-~~~~~~i~----a~~aVilAtGGf~~N~em~~  282 (584)
T PRK12835        221 LALKDAGVPLWLDSPMTELITDPDG----AVVGAVVER-EGRTLRIG----ARRGVILATGGFDHDMDWRK  282 (584)
T ss_pred             HHHHhCCceEEeCCEEEEEEECCCC----cEEEEEEEe-CCcEEEEE----eceeEEEecCcccCCHHHHH
Confidence            3567789999999999999998654    999999865 66665555    44689999999998665554

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.59  E-value=2.5e-14  Score=152.80  Aligned_cols=63  Identities=16%  Similarity=0.324  Sum_probs=49.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      +...+++.|++|+++++|++|+.+++     +|+||++.. +|+.+.+.    +++.||||||+|....-|+.
T Consensus       214 l~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~~aVIlAtGG~~~N~em~~  276 (557)
T PRK12844        214 MLEAALAAGVPLWTNTPLTELIVEDG-----RVVGVVVVR-DGREVLIR----ARRGVLLASGGFGHNAEMRK  276 (557)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEEEE-CCeEEEEE----ecceEEEecCCccCCHHHHH
Confidence            33456778999999999999998765     999999875 56655555    45789999999998765554

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.58  E-value=1.5e-14  Score=152.41  Aligned_cols=194  Identities=19%  Similarity=0.164  Sum_probs=109.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccc
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL  123 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  123 (539)
                      ..++||||||+|++|+++|++|++ |.+|+||||++...                                        .
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~----------------------------------------~   41 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREW----------------------------------------R   41 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcC----------------------------------------C
Confidence            457999999999999999999999 99999999987411                                        3


Q ss_pred             cchhhhccceeecCCh-hhHhcCCCCHHHHhhhhhhhhcccccCCCCc---hh---HHHHHHHHHHcCCCCCCCCccCCC
Q 009241          124 GGGTCINAGFYTRAEP-YYAREAGWDGRLVNESYQWVEKKVVFRPPMQ---RW---QSALRDGLVEVGVLPYNGFTYDHL  196 (539)
Q Consensus       124 GG~s~~~~~~~~r~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~g~~~~~~~~~~~~  196 (539)
                      ||++.+.++....... .......++.++   ++....+.........   .+   .....+++++.|+.......  ..
T Consensus        42 GG~s~~s~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~--~~  116 (466)
T PRK08274         42 GGNSRHTRNLRCMHDAPQDVLVGAYPEEE---FWQDLLRVTGGRTDEALARLLIRESSDCRDWMRKHGVRFQPPLS--GA  116 (466)
T ss_pred             CcccccCCceeeeCCCchhhccccccHHH---HHHHHHHhhCCCCCHHHHHHHHHcCHHHHHHHHhCCceEeecCC--Cc
Confidence            5655555542211111 000001122222   2222222111111100   00   12344566777765321100  00


Q ss_pred             CceeeeeeeecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEE
Q 009241          197 YGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEII  276 (539)
Q Consensus       197 ~~~~~~~~~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VV  276 (539)
                      .........+ ..+.......+...+++.|++++++++|++|+.+++     +|+||.+.+.+++...+.     ++.||
T Consensus       117 ~~~~~~~~~~-~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g-----~v~gv~~~~~~g~~~~i~-----a~~VI  185 (466)
T PRK08274        117 LHVARTNAFF-WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG-----RFVGARAGSAAGGAERIR-----AKAVV  185 (466)
T ss_pred             cccCCCCeee-cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-----eEEEEEEEccCCceEEEE-----CCEEE
Confidence            0000000011 111111112244566778999999999999998754     899998865456555554     79999


Q ss_pred             EcCCCcccHHHHHhcCCC
Q 009241          277 VSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       277 lAaG~~~sp~lLl~SGig  294 (539)
                      ||+|++..++.++..-.+
T Consensus       186 lAtGg~~~n~~~~~~~~~  203 (466)
T PRK08274        186 LAAGGFESNREWLREAWG  203 (466)
T ss_pred             ECCCCCCCCHHHHHhhcC
Confidence            999999998888876444

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.57  E-value=1.4e-14  Score=150.62  Aligned_cols=183  Identities=25%  Similarity=0.305  Sum_probs=98.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccccchh
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGT  127 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~s  127 (539)
                      ||||||+|.+|++||++|++ |.+|+||||++.                                          +||++
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~------------------------------------------~gg~~   38 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR------------------------------------------LGGSS   38 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG------------------------------------------GGSGG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc------------------------------------------ccccc
Confidence            89999999999999999999 999999999985                                          56766


Q ss_pred             hhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCC---c---hhHHHHHHHHHHcCCCCCC---C-CccCCCC
Q 009241          128 CINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPM---Q---RWQSALRDGLVEVGVLPYN---G-FTYDHLY  197 (539)
Q Consensus       128 ~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~g~~~~~---~-~~~~~~~  197 (539)
                      ...++.+.-.........+-. +..+.++....+......+.   .   .......+++++.|+....   + +......
T Consensus        39 ~~s~g~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g  117 (417)
T PF00890_consen   39 AFSSGGFDAAGTPPQREAGIE-DSPEEFFQDIMAAGGGLNDPDLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFG  117 (417)
T ss_dssp             GGTCSEEEESSSHSSHHTTTT-CHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEET
T ss_pred             ccccCceeeeccccccccccc-ccccccceeeecccccccccchhhhhhhcccceehhhhhhcccccccccccccccccC
Confidence            666665544332211111110 11222222222221111111   0   1123455667777765432   0 0000000


Q ss_pred             ceeee-eeee-cCCC------cccch-hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEe
Q 009241          198 GTKIG-GTII-DQNS------QRHTA-ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYL  267 (539)
Q Consensus       198 ~~~~~-~~~~-~~~g------~r~~~-~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~  267 (539)
                      ..... .... ..+.      ..... ..+...+++.|++|+++++|++|+.+++     +|+||++.+ .+|+.++++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g-----~V~Gv~~~~~~~g~~~~i~-  191 (417)
T PF00890_consen  118 GHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITEDG-----RVTGVVAENPADGEFVRIK-  191 (417)
T ss_dssp             TESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----EEEEEEEEETTTCEEEEEE-
T ss_pred             CccccceeeeccccccccccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCC-----ceeEEEEEECCCCeEEEEe-
Confidence            00000 0111 1111      00011 1244466778899999999999999876     999999984 367666665 


Q ss_pred             ccCCCCeEEEcCCCccc
Q 009241          268 RNGPKNEIIVSAGALGS  284 (539)
Q Consensus       268 ~~~~a~~VVlAaG~~~s  284 (539)
                          ++.||||+|++..
T Consensus       192 ----A~aVIlAtGG~~~  204 (417)
T PF00890_consen  192 ----AKAVILATGGFGG  204 (417)
T ss_dssp             ----ESEEEE----BGG
T ss_pred             ----eeEEEeccCcccc
Confidence                6799999999998

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.57  E-value=5.3e-14  Score=151.66  Aligned_cols=59  Identities=15%  Similarity=0.255  Sum_probs=46.0

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSP  285 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp  285 (539)
                      +...+.+.|++|++++.+++|+.++++    +|.||.+.+. +|+...+     .+|.||||+|+++..
T Consensus       193 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~g~~  252 (635)
T PLN00128        193 LYGQAMKHNTQFFVEYFALDLIMDSDG----ACQGVIALNMEDGTLHRF-----RAHSTILATGGYGRA  252 (635)
T ss_pred             HHHHHHhCCCEEEEeeEEEEEEEcCCC----EEEEEEEEEcCCCeEEEE-----EcCeEEECCCCCccc
Confidence            444455679999999999999987443    9999988763 5665555     389999999999853

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.56  E-value=4.3e-14  Score=149.88  Aligned_cols=58  Identities=9%  Similarity=0.170  Sum_probs=45.5

Q ss_pred             CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      ++.|++|+++++|++|+.+++     +|+||++.. ++..+.++    ++|.||||||+++...-|+.
T Consensus       185 ~~~gv~i~~~t~~~~Li~~~g-----~v~Gv~~~~-~g~~~~i~----A~k~VIlAtGG~~~n~~m~~  242 (513)
T PRK12837        185 RFPNARLRLNTPLVELVVEDG-----RVVGAVVER-GGERRRVR----ARRGVLLAAGGFEQNDDMRA  242 (513)
T ss_pred             hCCCCEEEeCCEEEEEEecCC-----EEEEEEEEE-CCcEEEEE----eCceEEEeCCCccCCHHHHH
Confidence            446999999999999998754     999999865 56665565    45689999999986655443

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.56  E-value=6.6e-14  Score=149.82  Aligned_cols=194  Identities=19%  Similarity=0.194  Sum_probs=104.8

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccc
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL  123 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  123 (539)
                      +.++||||||+|.+|++||+.|++ |.+|+||||++...                                        +
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~----------------------------------------~   41 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEAN----------------------------------------L   41 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC----------------------------------------C
Confidence            467999999999999999999999 99999999998311                                        5


Q ss_pred             cchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc----hh--------HHHHHHHHHHcCCCCCCCC
Q 009241          124 GGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ----RW--------QSALRDGLVEVGVLPYNGF  191 (539)
Q Consensus       124 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~~g~~~~~~~  191 (539)
                      ||++.+.++.+.-......+..+.. ++.+.++.+..+.........    .+        .....+++++.|++.....
T Consensus        42 GG~s~~s~Gg~~~~~~~~q~~~gi~-ds~e~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~  120 (549)
T PRK12834         42 GGQAFWSLGGLFLVDSPEQRRLGIK-DSLELALQDWLGSAGFDRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVV  120 (549)
T ss_pred             CCceeccCCceeccCCHHHHhcCcc-cCHHHHHHHHHhccCCCCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecC
Confidence            6666555544333222222223332 222233333222111111111    01        1345567777887542211


Q ss_pred             ccC--C--CCcee--eeeeeecCCCcccch-hhhhhhc----CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe--C
Q 009241          192 TYD--H--LYGTK--IGGTIIDQNSQRHTA-ADLLEYA----NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD--A  258 (539)
Q Consensus       192 ~~~--~--~~~~~--~~~~~~~~~g~r~~~-~~~l~~~----~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~--~  258 (539)
                      ...  .  .....  ....+....+..... ..+...+    +..|++|++++++++|+.+++     +|+||++.+  .
T Consensus       121 ~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~g-----~V~Gv~~~~~~~  195 (549)
T PRK12834        121 GWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREAAARGLVRFRFRHRVDELVVTDG-----AVTGVRGTVLEP  195 (549)
T ss_pred             CccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeCC-----EEEEEEEEeccc
Confidence            000  0  00000  000000011100111 1122222    244699999999999998754     999998742  1


Q ss_pred             C------------CCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241          259 T------------DAEHIAYLRNGPKNEIIVSAGALGSPQLLM  289 (539)
Q Consensus       259 ~------------g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl  289 (539)
                      +            +..+.+     .+|.||||||+|+...-|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~i-----~AkaVILATGGf~~n~em~  233 (549)
T PRK12834        196 SDAERGEASSREVVGEFEL-----RAQAVIVTSGGIGGNHELV  233 (549)
T ss_pred             ccccccccccccccceEEE-----ecCEEEEeCCCcccCHHHH
Confidence            1            122333     3799999999999766544

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.54  E-value=9.2e-14  Score=144.07  Aligned_cols=177  Identities=15%  Similarity=0.223  Sum_probs=96.4

Q ss_pred             CCccEEEECCCcchHHHHHhhhcCCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccccc
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGG  125 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG  125 (539)
                      .++||||||+|.+|++||..|++|.+|+||||++..                                          ||
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~~G~~V~lleK~~~~------------------------------------------gg   40 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLRKDLKILMVSKGKLN------------------------------------------EC   40 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhccCCCEEEEecCCCC------------------------------------------CC
Confidence            579999999999999999998559999999998752                                          34


Q ss_pred             hhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCC---chh---HHHHHHHHHHcCCCCCCCC---ccCCC
Q 009241          126 GTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPM---QRW---QSALRDGLVEVGVLPYNGF---TYDHL  196 (539)
Q Consensus       126 ~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~g~~~~~~~---~~~~~  196 (539)
                      +|.+..+.+.....         .++.+.+++...+.-......   ..+   .....+++++.|+.+....   .+...
T Consensus        41 ~s~~a~ggi~~~~~---------~d~~~~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~  111 (433)
T PRK06175         41 NTYLAQGGISVARN---------KDDITSFVEDTLKAGQYENNLEAVKILANESIENINKLIDMGLNFDKDEKELSYTKE  111 (433)
T ss_pred             chHHHhHhheeCCC---------CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCceeeecc
Confidence            33333322211110         012222232221111111111   111   2334566777777543211   01000


Q ss_pred             CceeeeeeeecCCCc-ccchhhhhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCe
Q 009241          197 YGTKIGGTIIDQNSQ-RHTAADLLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNE  274 (539)
Q Consensus       197 ~~~~~~~~~~~~~g~-r~~~~~~l~~~-~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~  274 (539)
                      .+......+...+.. +.-...++..+ ++.|++|+++|+|++|+.+++     ++.||.+.+ ++....+.     ++.
T Consensus       112 g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~-----~v~Gv~~~~-~g~~~~i~-----Ak~  180 (433)
T PRK06175        112 GAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDN-----TCIGAICLK-DNKQINIY-----SKV  180 (433)
T ss_pred             CccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCC-----EEEEEEEEE-CCcEEEEE-----cCe
Confidence            011000111111111 11112244444 356999999999999998765     899988765 45444443     799


Q ss_pred             EEEcCCCccc
Q 009241          275 IIVSAGALGS  284 (539)
Q Consensus       275 VVlAaG~~~s  284 (539)
                      ||||+|+++.
T Consensus       181 VILAtGG~~~  190 (433)
T PRK06175        181 TILATGGIGG  190 (433)
T ss_pred             EEEccCcccc
Confidence            9999999775

>PRK12839 hypothetical protein; Provisional

Probab=99.51  E-value=2.1e-13  Score=145.79  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=49.0

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM  289 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl  289 (539)
                      ++..+.+.|++|+++|.|++|+.++++    +|+||++.+.++. ..+.    ++|.||||||+|....-++
T Consensus       220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g----~V~GV~~~~~~g~-~~i~----aak~VVLAtGGf~~n~~~~  282 (572)
T PRK12839        220 LLRSADDLGVDLRVSTSATSLTTDKNG----RVTGVRVQGPDGA-VTVE----ATRGVVLATGGFPNDVDRR  282 (572)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEECCCC----cEEEEEEEeCCCc-EEEE----eCCEEEEcCCCcccCHHHH
Confidence            444566789999999999999987554    9999998775564 3344    5799999999999855544

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.51  E-value=2.4e-13  Score=156.27  Aligned_cols=196  Identities=16%  Similarity=0.092  Sum_probs=106.4

Q ss_pred             CCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCc
Q 009241           42 AKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRA  120 (539)
Q Consensus        42 ~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  120 (539)
                      +..+.++||||||+|.+|++||+++++ |.+|+||||++.                                        
T Consensus       404 i~~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~----------------------------------------  443 (1167)
T PTZ00306        404 IAGSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK----------------------------------------  443 (1167)
T ss_pred             cccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC----------------------------------------
Confidence            334567999999999999999999999 999999999875                                        


Q ss_pred             ccccchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhccc-ccCCCC---chh---HHHHHHHHHHcCCCCCCCCcc
Q 009241          121 RVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKV-VFRPPM---QRW---QSALRDGLVEVGVLPYNGFTY  193 (539)
Q Consensus       121 ~~lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~-~~~~~~---~~~---~~~~~~~~~~~g~~~~~~~~~  193 (539)
                        +||+|...++.+.-......+..|.. +..+.++....... ......   ..+   .....+++++.|+........
T Consensus       444 --~GG~s~~s~ggi~~~~t~~q~~~gi~-D~~~~~~~d~~~~~~~~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~  520 (1167)
T PTZ00306        444 --LGGNSAKATSGINGWGTRAQAKQDVL-DGGKFFERDTHLSGKGGHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQL  520 (1167)
T ss_pred             --CCCchhhcccccccCCchhhhhhccc-ccHHHHHHHHHHhccCCCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeecc
Confidence              56766655544433222222222211 11111111111100 001111   011   233456677777653210000


Q ss_pred             CCCCceeeeeeee-cCCCcc----cch-hhhhhhc---CCCCcEEEcCcEEEEEEecCCC----CCCCeEEEEEEEeC--
Q 009241          194 DHLYGTKIGGTII-DQNSQR----HTA-ADLLEYA---NPSGLTVLLHASVHKILFRNKG----KARPVAHGVVFRDA--  258 (539)
Q Consensus       194 ~~~~~~~~~~~~~-~~~g~r----~~~-~~~l~~~---~~~gv~i~~~t~V~~l~~~~~~----~~~~~v~gV~~~~~--  258 (539)
                      .... ........ ..++..    ... ..+...+   .+.|++|+++|+|++|+.++++    ....+|+||++.+.  
T Consensus       521 gg~~-~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~  599 (1167)
T PTZ00306        521 GGAS-RKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASD  599 (1167)
T ss_pred             CCCC-CCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEeccc
Confidence            0000 00000000 011110    001 1122222   2369999999999999987521    11238999999875  


Q ss_pred             -CCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241          259 -TDAEHIAYLRNGPKNEIIVSAGALGSPQ  286 (539)
Q Consensus       259 -~g~~~~~~~~~~~a~~VVlAaG~~~sp~  286 (539)
                       +|+.+.+.     +|.||||||+|+...
T Consensus       600 ~~g~~~~i~-----AkaVILATGGf~~N~  623 (1167)
T PTZ00306        600 ASGQVMDLL-----ADAVILATGGFSNDH  623 (1167)
T ss_pred             CCCcEEEEE-----eceEEEecCCcccCc
Confidence             67655554     799999999999864

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.51  E-value=1.4e-13  Score=134.02  Aligned_cols=188  Identities=18%  Similarity=0.242  Sum_probs=113.4

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccccc
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLG  124 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG  124 (539)
                      +.+||||||+|++|+++|..+++ |.+|+|+|+++.....-                              .     +-|
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKi------------------------------l-----~sG   46 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKI------------------------------L-----MSG   46 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCcccccee------------------------------E-----ecC
Confidence            46899999999999999999999 99999999998642111                              0     123


Q ss_pred             chhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeee
Q 009241          125 GGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGT  204 (539)
Q Consensus       125 G~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  204 (539)
                      | +..|-.-... ...+....+=.-..+...+.+..            .+.++++++.+|+.....          ..+.
T Consensus        47 g-GrCN~Tn~~~-~~~~ls~~p~~~~fl~sal~~ft------------~~d~i~~~e~~Gi~~~e~----------~~Gr  102 (408)
T COG2081          47 G-GRCNFTNSEA-PDEFLSRNPGNGHFLKSALARFT------------PEDFIDWVEGLGIALKEE----------DLGR  102 (408)
T ss_pred             C-CCcccccccc-HHHHHHhCCCcchHHHHHHHhCC------------HHHHHHHHHhcCCeeEEc----------cCce
Confidence            3 3223222111 11121111101112222222111            366888899988763211          1112


Q ss_pred             eecC-CCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          205 IIDQ-NSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       205 ~~~~-~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      .++. +....-...++..+++.||+|+++++|..|..++.        +..+..++|+  .++     ++.+|||+|+..
T Consensus       103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~--------~f~l~t~~g~--~i~-----~d~lilAtGG~S  167 (408)
T COG2081         103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS--------GFRLDTSSGE--TVK-----CDSLILATGGKS  167 (408)
T ss_pred             ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc--------eEEEEcCCCC--EEE-----ccEEEEecCCcC
Confidence            3333 33232233366678889999999999999998774        4555555775  233     899999999998


Q ss_pred             cHHHHHhcCCCChhhhhhCCCcceec
Q 009241          284 SPQLLMLSGVGPADHLKAHNITVVLD  309 (539)
Q Consensus       284 sp~lLl~SGig~~~~l~~~gi~~~~~  309 (539)
                      -|++-- .|.| ....+.+|+++...
T Consensus       168 ~P~lGs-tg~g-y~iA~~~G~~I~~~  191 (408)
T COG2081         168 WPKLGS-TGFG-YPIARQFGHTITPL  191 (408)
T ss_pred             CCCCCC-Cchh-hHHHHHcCCccccC
Confidence            887743 3444 34456667665433

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.50  E-value=1.3e-13  Score=144.16  Aligned_cols=64  Identities=20%  Similarity=0.416  Sum_probs=49.0

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      +...+++.|++|+++++|++|+.++++    +++||++.+.++..+.+     +++.||||+|++....-|+.
T Consensus       136 l~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~~-----~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       136 LYKKAKKEGIDTRLNSKVEDLIQDDQG----TVVGVVVKGKGKGIYIK-----AAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HHHHHHHcCCEEEeCCEeeEeEECCCC----cEEEEEEEeCCCeEEEE-----ecceEEEecCCCCCCHHHHH
Confidence            445667789999999999999987654    89999988655543333     48999999999987554443

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.49  E-value=6e-13  Score=142.33  Aligned_cols=63  Identities=13%  Similarity=0.257  Sum_probs=49.3

Q ss_pred             hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241          219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS  291 (539)
Q Consensus       219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S  291 (539)
                      ...+++.|++|+++++|++|+.+++     +|+||++.. +++.+.+.    +++.||||+|+|....-|+..
T Consensus       215 ~~~~~~~gv~v~~~t~v~~l~~~~g-----~v~Gv~~~~-~g~~~~i~----A~~~VIlAtGG~~~n~~m~~~  277 (557)
T PRK07843        215 RIGLQRAGVPVLLNTPLTDLYVEDG-----RVTGVHAAE-SGEPQLIR----ARRGVILASGGFEHNEQMRAK  277 (557)
T ss_pred             HHHHHcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEe-CCcEEEEE----eceeEEEccCCcCcCHHHHHH
Confidence            3455678999999999999998754     999999875 56555555    446899999999997766543

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.47  E-value=8.8e-13  Score=141.69  Aligned_cols=63  Identities=13%  Similarity=0.192  Sum_probs=49.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      ++..+++.|++|++++.|++|+.+++     +|+||.+.+ +++.+.+.    +++.||||+|+++...-|+.
T Consensus       227 L~~~~~~~Gv~i~~~t~v~~Li~~~g-----~V~GV~~~~-~g~~~~i~----A~~~VVlAtGg~~~n~em~~  289 (578)
T PRK12843        227 LLYSLRARGVRILTQTDVESLETDHG-----RVIGATVVQ-GGVRRRIR----ARGGVVLATGGFNRHPQLRR  289 (578)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEec-CCeEEEEE----ccceEEECCCCcccCHHHHH
Confidence            44566778999999999999998754     999998865 55555554    45899999999998765554

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.47  E-value=1.2e-12  Score=140.82  Aligned_cols=62  Identities=15%  Similarity=0.198  Sum_probs=47.6

Q ss_pred             hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      ...+++.|++|++++.|++|+.+++     +|+||.+.+.++ ...+.    +++.||||+|++....-++.
T Consensus       221 ~~~~~~~Gv~i~~~~~v~~l~~~~g-----~V~GV~~~~~~~-~~~i~----a~k~VVlAtGg~~~n~~~~~  282 (574)
T PRK12842        221 AKSALDLGIPILTGTPARELLTEGG-----RVVGARVIDAGG-ERRIT----ARRGVVLACGGFSHDLARIA  282 (574)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEeeCC-----EEEEEEEEcCCc-eEEEE----eCCEEEEcCCCccchHHHHH
Confidence            3456678999999999999998765     999999876444 33444    45789999999987666554

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.47  E-value=6.2e-13  Score=142.76  Aligned_cols=58  Identities=12%  Similarity=0.091  Sum_probs=45.9

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|+++++++.|++|+.++++    +|+||.+.+ .+|+.+.+.     +|.||||||+++.
T Consensus       149 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~  207 (588)
T PRK08958        149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTAICIETGEVVYFK-----ARATVLATGGAGR  207 (588)
T ss_pred             HHHHhhhcCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence            444556789999999999999987544    999999864 356655554     7999999999875

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.47  E-value=7.4e-13  Score=141.81  Aligned_cols=56  Identities=16%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      +...+.+.|+++++++.+++|+.+++     +|+||.+.+. +++...+     .+|.||||||+++
T Consensus       142 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~  198 (566)
T PRK06452        142 LFERTSGLNVDFYNEWFSLDLVTDNK-----KVVGIVAMQMKTLTPFFF-----KTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEEECC-----EEEEEEEEECCCCeEEEE-----EeCeEEECCCccc
Confidence            44445567999999999999998764     9999998864 3444444     4799999999998

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.46  E-value=7.7e-13  Score=143.15  Aligned_cols=54  Identities=13%  Similarity=0.281  Sum_probs=44.3

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      .+++.|++|++++.|++|+.+++     +|+||.+.+. +|....+     .+|.||||||+++.
T Consensus       179 ~~~~~gV~i~~~t~v~~Li~d~g-----~V~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~  233 (640)
T PRK07573        179 QIAAGTVKMYTRTEMLDLVVVDG-----RARGIVARNLVTGEIERH-----TADAVVLATGGYGN  233 (640)
T ss_pred             HHHhcCCEEEeceEEEEEEEeCC-----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCccc
Confidence            45678999999999999998765     9999998764 5654444     48999999999986

>PLN02815 L-aspartate oxidase

Probab=99.46  E-value=5.1e-13  Score=142.77  Aligned_cols=183  Identities=18%  Similarity=0.196  Sum_probs=97.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccc
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL  123 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  123 (539)
                      +.++||||||+|.+|++||+++++ | +|+||||++.                                          .
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~------------------------------------------~   63 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP------------------------------------------H   63 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC------------------------------------------C
Confidence            446999999999999999999999 9 9999999975                                          3


Q ss_pred             cchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCC---chh---HHHHHHHHHHcCCCCCCCCccC---
Q 009241          124 GGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPM---QRW---QSALRDGLVEVGVLPYNGFTYD---  194 (539)
Q Consensus       124 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~g~~~~~~~~~~---  194 (539)
                      ||+|.+..+.+......        .+..+.+++...+.-....+.   ..+   .....+++++.|+++.......   
T Consensus        64 gg~s~~a~Ggi~a~~~~--------~Ds~e~~~~d~~~~g~~~~d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~  135 (594)
T PLN02815         64 ESNTNYAQGGVSAVLDP--------SDSVESHMRDTIVAGAFLCDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHL  135 (594)
T ss_pred             CCcHHHhhcccccCCCC--------CCCHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccc
Confidence            34444443322111000        011222222221111110110   001   2234456677787643211000   


Q ss_pred             -CCCceeeeeeeecCCCcccch-hhhhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccC
Q 009241          195 -HLYGTKIGGTIIDQNSQRHTA-ADLLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNG  270 (539)
Q Consensus       195 -~~~~~~~~~~~~~~~g~r~~~-~~~l~~~-~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~  270 (539)
                       ...+....-.+...+...... ..+...+ +..|++|++++.+++|+.++++ ...+|+||.+.+. +|..+.+.    
T Consensus       136 ~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g-~~~~v~Gv~~~~~~~g~~~~i~----  210 (594)
T PLN02815        136 AREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDG-GSIVCHGADVLDTRTGEVVRFI----  210 (594)
T ss_pred             cCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCC-CccEEEEEEEEEcCCCeEEEEE----
Confidence             000000000111111000011 1244433 3459999999999999986542 0014899998653 56555553    


Q ss_pred             CCCeEEEcCCCccc
Q 009241          271 PKNEIIVSAGALGS  284 (539)
Q Consensus       271 ~a~~VVlAaG~~~s  284 (539)
                       +|.||||||+++.
T Consensus       211 -AkaVILATGG~g~  223 (594)
T PLN02815        211 -SKVTLLASGGAGH  223 (594)
T ss_pred             -eceEEEcCCccee
Confidence             7999999999974

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.46  E-value=7.5e-13  Score=142.78  Aligned_cols=58  Identities=12%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|+++++++.|++|+.++++    +|.||.+.+ .+|+.+.+     .+|.||||||+++.
T Consensus       172 L~~~a~~~gv~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVVLATGG~~~  230 (617)
T PTZ00139        172 LYGQSLKYDCNFFIEYFALDLIMDEDG----ECRGVIAMSMEDGSIHRF-----RAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHhCCCEEEeceEEEEEEECCCC----EEEEEEEEECCCCeEEEE-----ECCcEEEeCCCCcc
Confidence            444566789999999999999985443    999998865 35655554     48999999999875

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.46  E-value=4.9e-13  Score=142.97  Aligned_cols=58  Identities=21%  Similarity=0.365  Sum_probs=46.1

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|+++|.|++|+.++++    +|+||.+.+ .+|..+.+.     +|.||||+|+++.
T Consensus       140 L~~~~~~~gv~i~~~t~v~~Li~~~~~----~v~Gv~~~~~~~g~~~~i~-----AkaVIlATGG~~~  198 (543)
T PRK06263        140 LMEYLIKERIKILEEVMAIKLIVDENR----EVIGAIFLDLRNGEIFPIY-----AKATILATGGAGQ  198 (543)
T ss_pred             HHHHHhcCCCEEEeCeEeeeeEEeCCc----EEEEEEEEECCCCcEEEEE-----cCcEEECCCCCCC
Confidence            444556689999999999999988763    699998876 566655554     7999999999874

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.45  E-value=8.1e-13  Score=142.30  Aligned_cols=58  Identities=16%  Similarity=0.285  Sum_probs=46.1

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|+++++++.|++|+.++++    +|+||.+.+ .+|..+.+.     +|.||||||+++.
T Consensus       155 L~~~~~~~gi~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  213 (598)
T PRK09078        155 LYQQSLKHNAEFFIEYFALDLIMDDGG----VCRGVVAWNLDDGTLHRFR-----AHMVVLATGGYGR  213 (598)
T ss_pred             HHHHHhhcCCEEEEeEEEEEEEEcCCC----EEEEEEEEECCCCcEEEEE-----cCEEEECCCCCcc
Confidence            444566789999999999999987643    999998864 356655553     7999999999986

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.45  E-value=1.9e-12  Score=139.19  Aligned_cols=63  Identities=16%  Similarity=0.222  Sum_probs=48.3

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      +.+.+++.|++|+++++|++|+.+++     +|+||.+.+. +....+.    +++.||||+|++.....++.
T Consensus       223 L~~~a~~~Gv~i~~~t~v~~l~~~~g-----~v~GV~~~~~-~~~~~i~----a~k~VVlAtGg~~~n~~~~~  285 (581)
T PRK06134        223 LLKSAEDLGVRIWESAPARELLREDG-----RVAGAVVETP-GGLQEIR----ARKGVVLAAGGFPHDPARRA  285 (581)
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEeCC-----EEEEEEEEEC-CcEEEEE----eCCEEEEcCCCcccCHHHHH
Confidence            44466778999999999999998754     9999988763 4344444    34899999999988666543

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.44  E-value=4.4e-13  Score=142.67  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=43.1

Q ss_pred             hhhhcC-CCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYAN-PSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~-~~gv~i~~~t~V~~l~~~~-~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+. +.|++|++++.|++|+.++ ++    +|+||.+.+ +|..+.+     .+|.||||+|+++.
T Consensus       140 L~~~~~~~~gi~i~~~~~v~~Li~~~~~g----~v~Gv~~~~-~g~~~~i-----~AkaVILATGG~~~  198 (553)
T PRK07395        140 LTEQVLQRPNIEIISQALALSLWLEPETG----RCQGISLLY-QGQITWL-----RAGAVILATGGGGQ  198 (553)
T ss_pred             HHHHHhhcCCcEEEECcChhhheecCCCC----EEEEEEEEE-CCeEEEE-----EcCEEEEcCCCCcc
Confidence            334343 4699999999999999874 33    899998865 5654444     37999999999864

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.44  E-value=1.5e-12  Score=138.84  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=34.5

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++.++||||||+|.+|++||++|++ |.+|+||||++.
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~   50 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL   50 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence            4668999999999999999999999 999999999975

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.42  E-value=1e-13  Score=141.16  Aligned_cols=189  Identities=23%  Similarity=0.288  Sum_probs=91.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccccch
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGG  126 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lGG~  126 (539)
                      |||||||+|++|++||+.|++ |.+|+||||++....           +.                        ...|+ 
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gk-----------Ki------------------------l~tG~-   44 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGK-----------KI------------------------LITGN-   44 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-H-----------HH------------------------HHCGG-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccc-----------ce------------------------eecCC-
Confidence            899999999999999999999 999999999976310           00                        01232 


Q ss_pred             hhhccceeecCChhhH-hcCCCCHHHHhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeee
Q 009241          127 TCINAGFYTRAEPYYA-REAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTI  205 (539)
Q Consensus       127 s~~~~~~~~r~~~~~~-~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  205 (539)
                      ...|-.-. ......+ ...+-..+.+.+.+...            ....+.+.+++.|+....          ...+.+
T Consensus        45 GrCN~tn~-~~~~~~~~~~~~~~~~f~~~~l~~f------------~~~d~~~ff~~~Gv~~~~----------~~~gr~  101 (409)
T PF03486_consen   45 GRCNLTNL-NIDPSEFLSGYGRNPKFLKSALKRF------------SPEDLIAFFEELGVPTKI----------EEDGRV  101 (409)
T ss_dssp             GT-EEEET-TSSGGGEECS-TBTTTCTHHHHHHS-------------HHHHHHHHHHTT--EEE-----------STTEE
T ss_pred             CCcccccc-ccchhhHhhhcccchHHHHHHHhcC------------CHHHHHHHHHhcCCeEEE----------cCCCEE
Confidence            22222110 1111111 10000111111111111            135577888888875211          011234


Q ss_pred             ecCCCcccchhh-hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          206 IDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       206 ~~~~g~r~~~~~-~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      ++......+... ++..+++.|++|+++++|+.|+.+++     .+..|...  ++..  +.     ++.||||+|+...
T Consensus       102 fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----~~f~v~~~--~~~~--~~-----a~~vILAtGG~S~  167 (409)
T PF03486_consen  102 FPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKED-----GVFGVKTK--NGGE--YE-----ADAVILATGGKSY  167 (409)
T ss_dssp             EETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT-----EEEEEEET--TTEE--EE-----ESEEEE----SSS
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC-----ceeEeecc--Cccc--cc-----CCEEEEecCCCCc
Confidence            443333333333 55567788999999999999998887     66677662  3332  33     7999999999888


Q ss_pred             HHHHHhcCCCChhhhhhCCCcceecCc
Q 009241          285 PQLLMLSGVGPADHLKAHNITVVLDQP  311 (539)
Q Consensus       285 p~lLl~SGig~~~~l~~~gi~~~~~~~  311 (539)
                      |++.- +|-| -..++++|+.+....|
T Consensus       168 p~~GS-~G~g-y~~a~~lGh~i~~~~P  192 (409)
T PF03486_consen  168 PKTGS-DGSG-YRIAKKLGHTITPPYP  192 (409)
T ss_dssp             GGGT--SSHH-HHHHHHTT--EEEEEE
T ss_pred             cccCC-CcHH-HHHHHHCCCcEecCCC
Confidence            87522 2222 2445677776655444

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.41  E-value=3.2e-12  Score=136.27  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=41.7

Q ss_pred             CCCCcEEEcCcEEEEEEecCCC-CCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          223 NPSGLTVLLHASVHKILFRNKG-KARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~-~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +..|++|++++.|++|+.+++. ....+|+||.+.+. +|+...+     .++.||||+|+++.
T Consensus       150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i-----~Ak~VVlATGG~~~  208 (536)
T PRK09077        150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETI-----RAKFVVLATGGASK  208 (536)
T ss_pred             hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEE-----ecCeEEECCCCCCC
Confidence            3469999999999999976410 00028999998763 4554444     48999999999875

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.41  E-value=2.8e-12  Score=135.70  Aligned_cols=56  Identities=21%  Similarity=0.343  Sum_probs=43.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+. .|++|++++.|++|+.+++     ++.||.+.+.+|+.+.+.     ++.||||+|+++.
T Consensus       136 L~~~~~-~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~g~~~~i~-----Ak~VVlATGG~~~  191 (510)
T PRK08071        136 LLQELV-PHVTVVEQEMVIDLIIENG-----RCIGVLTKDSEGKLKRYY-----ADYVVLASGGCGG  191 (510)
T ss_pred             HHHHHh-cCCEEEECeEhhheeecCC-----EEEEEEEEECCCcEEEEE-----cCeEEEecCCCcc
Confidence            333343 6999999999999988765     999999876556554443     7999999999875

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.40  E-value=2.1e-12  Score=140.01  Aligned_cols=57  Identities=18%  Similarity=0.177  Sum_probs=46.1

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|+.++.|++|+.+++     +|.||.+.+ .+|+...+.     +|.||||||+++.
T Consensus       164 L~~~~~~~gv~i~~~~~~~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----AkaVVLATGG~g~  221 (657)
T PRK08626        164 VDNEAIKLGVPVHDRKEAIALIHDGK-----RCYGAVVRCLITGELRAYV-----AKATLIATGGYGR  221 (657)
T ss_pred             HHHHHHhCCCEEEeeEEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccC
Confidence            33456678999999999999998765     999999986 467655553     7999999999875

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.40  E-value=2.9e-12  Score=137.78  Aligned_cols=58  Identities=14%  Similarity=0.159  Sum_probs=45.0

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++++.++.|++|+.++++    +|.||.+.+. +|....+     .+|.||||+|+++.
T Consensus       154 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~  212 (591)
T PRK07057        154 LYQQNVAAKTQFFVEWMALDLIRDADG----DVLGVTALEMETGDVYIL-----EAKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHHhcCCEEEeCcEEEEEEEcCCC----eEEEEEEEEcCCCeEEEE-----ECCeEEECCCCccc
Confidence            444556689999999999999987543    8999988653 4544444     48999999999875

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.40  E-value=2.8e-12  Score=137.87  Aligned_cols=50  Identities=22%  Similarity=0.290  Sum_probs=40.0

Q ss_pred             CcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          226 GLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       226 gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      ++++++++.+++|+.++++    +|+||.+.+. +++...+     .+|.||||||+++.
T Consensus       151 ~i~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~~  201 (589)
T PRK08641        151 LVTKYEGWEFLGAVLDDEG----VCRGIVAQDLFTMEIESF-----PADAVIMATGGPGI  201 (589)
T ss_pred             CcEEEeeEEEEEEEECCCC----EEEEEEEEECCCCcEEEE-----ECCEEEECCCCCcC
Confidence            4899999999999987554    9999999864 3443344     48999999999885

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.40  E-value=3.8e-12  Score=136.66  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      ..|+++++++.|++|+.+++     +|.||.+.+ .+|....+     .+|.||||+|+++.
T Consensus       146 ~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVIlATGG~~~  197 (582)
T PRK09231        146 YPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQI-----RANAVVMATGGAGR  197 (582)
T ss_pred             CCCcEEEeCeEEEEEEEeCC-----EEEEEEEEEcCCCcEEEE-----ECCEEEECCCCCcC
Confidence            35899999999999998765     999998764 35654444     38999999999874

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.38  E-value=4.9e-12  Score=136.01  Aligned_cols=57  Identities=19%  Similarity=0.355  Sum_probs=44.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|++++.|++|+.+++     +|.||.+.+ .+|+...+     .++.||||+|+++.
T Consensus       141 L~~~~~~~gi~i~~~t~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVVlATGG~~~  198 (575)
T PRK05945        141 LVNNLRRYGVTIYDEWYVMRLILEDN-----QAKGVVMYHIADGRLEVV-----RAKAVMFATGGYGR  198 (575)
T ss_pred             HHHHHhhCCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCEEEECCCCCcC
Confidence            44556678999999999999998765     999998654 35554444     38999999999875

>TIGR00551 nadB L-aspartate oxidase

Probab=99.37  E-value=7e-12  Score=132.38  Aligned_cols=56  Identities=13%  Similarity=0.264  Sum_probs=43.1

Q ss_pred             hhhhcCC-CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~-~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+++ .|++|++++.|++|+.+++     ++.||.+.+. +....+     .++.||||+|++..
T Consensus       134 L~~~~~~~~gi~i~~~~~v~~l~~~~g-----~v~Gv~~~~~-~~~~~i-----~A~~VVlAtGG~~~  190 (488)
T TIGR00551       134 LVKKALNHPNIRIIEGENALDLLIETG-----RVVGVWVWNR-ETVETC-----HADAVVLATGGAGK  190 (488)
T ss_pred             HHHHHHhcCCcEEEECeEeeeeeccCC-----EEEEEEEEEC-CcEEEE-----EcCEEEECCCcccC
Confidence            4444554 6999999999999998765     8999988764 433344     38999999999875

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.36  E-value=7.6e-12  Score=134.07  Aligned_cols=52  Identities=13%  Similarity=0.158  Sum_probs=41.9

Q ss_pred             CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +..|++++.++.|++|+.+++     +|.||.+.+ .+|..+.+.     ++.||||+|+++.
T Consensus       144 ~~~~i~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~~~  196 (580)
T TIGR01176       144 TYPQIMRYDEWFVTDLLVDDG-----RVCGLVAIEMAEGRLVTIL-----ADAVVLATGGAGR  196 (580)
T ss_pred             hcCCCEEEeCeEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEe-----cCEEEEcCCCCcc
Confidence            336899999999999998765     999998765 356555553     8999999999874

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.35  E-value=9.4e-12  Score=132.89  Aligned_cols=193  Identities=18%  Similarity=0.205  Sum_probs=107.0

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccccc
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLG  124 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG  124 (539)
                      .+|||||||||..|+++|++|++ |.+|+||||+...                                          .
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~------------------------------------------~   42 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA------------------------------------------T   42 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC------------------------------------------C
Confidence            36999999999999999999999 9999999997542                                          2


Q ss_pred             chhhhccceeecCChh---hHhcCCCCHHHHhhhhhhhhc----c-----cccCCCCchhHHHHHHHHHHcCCCCC--CC
Q 009241          125 GGTCINAGFYTRAEPY---YAREAGWDGRLVNESYQWVEK----K-----VVFRPPMQRWQSALRDGLVEVGVLPY--NG  190 (539)
Q Consensus       125 G~s~~~~~~~~r~~~~---~~~~~gw~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~g~~~~--~~  190 (539)
                      |+|..|.++...+...   .........++. ..+.+...    .     +........+...+.+.+.+.|++..  ..
T Consensus        43 GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~-~~l~~~a~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~  121 (546)
T PRK11101         43 GATGRNHGLLHSGARYAVTDAESARECISEN-QILKRIARHCVEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDP  121 (546)
T ss_pred             CcccccccceeccchhcccCHHHHHHHHHHH-HHHHHhchHhhcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECH
Confidence            4454554443321110   000000000000 01111100    0     01111122333445555666665411  00


Q ss_pred             ---C-ccCCCCceeeeeeeecCCCcccchhh---hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCe
Q 009241          191 ---F-TYDHLYGTKIGGTIIDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAE  262 (539)
Q Consensus       191 ---~-~~~~~~~~~~~~~~~~~~g~r~~~~~---~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~  262 (539)
                         . ..........++.+++ +|.-.+...   +...+.+.|++++++++|+.|..+++     +++||.+.+. +++.
T Consensus       122 ~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~d~~~g~~  195 (546)
T PRK11101        122 QQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGD-----TVCGVRVRDHLTGET  195 (546)
T ss_pred             HHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCC-----eEEEEEEEEcCCCcE
Confidence               0 0011111123434443 554433322   34466778999999999999998765     8999998753 3443


Q ss_pred             EEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          263 HIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       263 ~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      ..+.     ++.||+|||.+ +..|+...|+
T Consensus       196 ~~i~-----A~~VVnAaG~w-a~~l~~~~g~  220 (546)
T PRK11101        196 QEIH-----APVVVNAAGIW-GQHIAEYADL  220 (546)
T ss_pred             EEEE-----CCEEEECCChh-HHHHHHhcCC
Confidence            4454     89999999974 6667655553

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.35  E-value=8e-12  Score=134.46  Aligned_cols=58  Identities=24%  Similarity=0.341  Sum_probs=44.6

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCC---CCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNK---GKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~---~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|+++++++.|++|+.+++   +    +|+||.+.+ .+|+.+.+.     +|.||||+|+++.
T Consensus       146 L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  207 (583)
T PRK08205        146 LYQNCVKHGVEFFNEFYVLDLLLTETPSGP----VAAGVVAYELATGEIHVFH-----AKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEecCCccCC----cEEEEEEEEcCCCeEEEEE-----eCeEEECCCCCcc
Confidence            44456678999999999999998752   3    899998854 355544443     7999999999874

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.34  E-value=1.1e-11  Score=133.57  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=44.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|+++++++.|++|+.+++     +|+||.+.+. +|+...+.     ++.||||+|++..
T Consensus       135 L~~~~~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~g~~~~i~-----Ak~VVlAtGG~~~  192 (566)
T TIGR01812       135 LYEQCLKLGVSFFNEYFALDLIHDDG-----RVRGVVAYDLKTGEIVFFR-----AKAVVLATGGYGR  192 (566)
T ss_pred             HHHHHHHcCCEEEeccEEEEEEEeCC-----EEEEEEEEECCCCcEEEEE-----CCeEEECCCcccC
Confidence            44445566999999999999998764     9999988653 56544443     7999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.34  E-value=1e-11  Score=133.70  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=43.3

Q ss_pred             hhhhcC-CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYAN-PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~-~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+. ..|+++++++.|++|+.+++     +++||.+.+. +|....+     .++.||||+|+++.
T Consensus       143 L~~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~  201 (577)
T PRK06069        143 LYSRALRFDNIHFYDEHFVTSLIVENG-----VFKGVTAIDLKRGEFKVF-----QAKAGIIATGGAGR  201 (577)
T ss_pred             HHHHHHhcCCCEEEECCEEEEEEEECC-----EEEEEEEEEcCCCeEEEE-----ECCcEEEcCchhcc
Confidence            444343 36999999999999998765     9999988653 5544444     38999999999864

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.33  E-value=1.1e-11  Score=131.29  Aligned_cols=56  Identities=20%  Similarity=0.426  Sum_probs=42.2

Q ss_pred             hhhhcCC-CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~-~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+ .|++++.++.|++|+.+++     +|+||.+.+ ++....+     .++.||||+|+++.
T Consensus       142 L~~~~~~~~gV~i~~~~~v~~Li~~~g-----~v~Gv~~~~-~~~~~~i-----~Ak~VVLATGG~~~  198 (513)
T PRK07512        142 LIAAVRATPSITVLEGAEARRLLVDDG-----AVAGVLAAT-AGGPVVL-----PARAVVLATGGIGG  198 (513)
T ss_pred             HHHHHHhCCCCEEEECcChhheeecCC-----EEEEEEEEe-CCeEEEE-----ECCEEEEcCCCCcC
Confidence            4444443 5899999999999987754     999998875 3333334     37999999999874

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.32  E-value=7.2e-12  Score=135.58  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|.||++||++|++ |.+|+||||++.
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence            46999999999999999999999 999999999874

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.29  E-value=2.1e-11  Score=131.26  Aligned_cols=52  Identities=15%  Similarity=0.250  Sum_probs=42.1

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +.|+++++++.|++|+.++++    +|+||.+.+. +|....+     .+|.||||||+++.
T Consensus       145 ~~gV~i~~~t~v~~Li~dd~g----rV~GV~~~~~~~g~~~~i-----~AkaVVLATGG~g~  197 (603)
T TIGR01811       145 AGLVEKYEGWEMLDIIVVDGN----RARGIIARNLVTGEIETH-----SADAVILATGGYGN  197 (603)
T ss_pred             cCCcEEEeCcEEEEEEEcCCC----EEEEEEEEECCCCcEEEE-----EcCEEEECCCCCcC
Confidence            458999999999999987654    9999998764 4554444     38999999999875

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.28  E-value=3.8e-11  Score=128.50  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=41.1

Q ss_pred             cCCCCcEEEcCcEEEEEEecCC--CCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          222 ANPSGLTVLLHASVHKILFRNK--GKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       222 ~~~~gv~i~~~t~V~~l~~~~~--~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      +.+.+++|+.++.|++|+.+++  +    +|+||.+.+ .+|+.+.+.     +|.||||||++.
T Consensus       136 l~~~~~~i~~~~~v~~Ll~d~~~~G----rV~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~  191 (614)
T TIGR02061       136 AKNALGDIFERIFIVKLLLDKNTPN----RIAGAVGFNVRANEVHVFK-----AKTVIVAAGGAV  191 (614)
T ss_pred             HHhCCCeEEcccEEEEEEecCCCCC----eEEEEEEEEeCCCcEEEEE-----CCEEEECCCccc
Confidence            3445689999999999998652  3    899998865 356555553     899999999986

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK08275 putative oxidoreductase; Provisional

Probab=99.26  E-value=5.9e-11  Score=127.21  Aligned_cols=58  Identities=17%  Similarity=0.212  Sum_probs=44.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+++.|++|++++.|++|+.++++    ++.||.+.+ .+|....+     .+|.||||+|+++.
T Consensus       143 L~~~~~~~gv~i~~~~~v~~Li~~~~g----~v~Gv~~~~~~~g~~~~i-----~Ak~VIlATGG~~~  201 (554)
T PRK08275        143 LYRQLKRARVLITNRIMATRLLTDADG----RVAGALGFDCRTGEFLVI-----RAKAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHCCCEEEcceEEEEEEEcCCC----eEEEEEEEecCCCcEEEE-----ECCEEEECCCCccc
Confidence            444556789999999999999987443    899998764 35654444     37999999999763

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.24  E-value=2.2e-10  Score=121.96  Aligned_cols=72  Identities=15%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             eecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          205 IIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       205 ~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +++..|...-...+...+++.|++|+++++|++|..+++     ++++|++.  +|+.  +     .++.||+|++...+
T Consensus       212 ~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~~V~~~--~g~~--~-----~ad~VI~a~~~~~~  277 (502)
T TIGR02734       212 WFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGG-----RATAVHLA--DGER--L-----DADAVVSNADLHHT  277 (502)
T ss_pred             EEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCC-----EEEEEEEC--CCCE--E-----ECCEEEECCcHHHH
Confidence            344445433333355566778999999999999998775     88888764  4543  2     37899999997777


Q ss_pred             HHHHHh
Q 009241          285 PQLLML  290 (539)
Q Consensus       285 p~lLl~  290 (539)
                      ...|+.
T Consensus       278 ~~~l~~  283 (502)
T TIGR02734       278 YRRLLP  283 (502)
T ss_pred             HHHhcC
Confidence            666653

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.23  E-value=6.9e-11  Score=127.73  Aligned_cols=65  Identities=25%  Similarity=0.298  Sum_probs=48.8

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSG  292 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~-~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SG  292 (539)
                      ++..+.+.|++++.+++|++|..++ ++    ++++|.+.+. +++...+.     ++.||+|||++ +.+++...|
T Consensus       238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g----~v~gV~v~d~~tg~~~~i~-----a~~VVnAaGaw-s~~l~~~~g  304 (627)
T PLN02464        238 LACTAALAGAAVLNYAEVVSLIKDESTG----RIVGARVRDNLTGKEFDVY-----AKVVVNAAGPF-CDEVRKMAD  304 (627)
T ss_pred             HHHHHHhCCcEEEeccEEEEEEEecCCC----cEEEEEEEECCCCcEEEEE-----eCEEEECCCHh-HHHHHHhcc
Confidence            4456778899999999999998874 33    8999988753 34443443     89999999985 666766554

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.23  E-value=8e-11  Score=118.79  Aligned_cols=193  Identities=20%  Similarity=0.180  Sum_probs=106.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV  122 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  122 (539)
                      .+|||+|||+|..|+++|+.|++ +  ++|+||||-.....                                       
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~---------------------------------------   42 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ---------------------------------------   42 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc---------------------------------------
Confidence            46999999999999999999999 6  99999999875321                                       


Q ss_pred             ccchhhhccceeecCCh-------hhHhcCC---CCHHHHhhh---hhhhhcc-cccCCCCchhHHHHHHHHHHcCCCCC
Q 009241          123 LGGGTCINAGFYTRAEP-------YYAREAG---WDGRLVNES---YQWVEKK-VVFRPPMQRWQSALRDGLVEVGVLPY  188 (539)
Q Consensus       123 lGG~s~~~~~~~~r~~~-------~~~~~~g---w~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~  188 (539)
                        ++|..|++...-+..       ..+...|   | .+..+.+   |.+..+. +.+..+..+..+.+.+.+.+.|+...
T Consensus        43 --~sS~~NSgviHag~~y~p~slka~l~~~g~~~~-~~~~kq~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~  119 (429)
T COG0579          43 --ESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINE-FAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDL  119 (429)
T ss_pred             --ccccCcccceeccccCCCcchhhHHHHHHHHHH-HHHHHHhCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcce
Confidence              334444444332211       0000000   1 1100111   1111111 11122223334555555666666511


Q ss_pred             C--------CCccCCCCceeeeeeeecCCCcccch---hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe
Q 009241          189 N--------GFTYDHLYGTKIGGTIIDQNSQRHTA---ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD  257 (539)
Q Consensus       189 ~--------~~~~~~~~~~~~~~~~~~~~g~r~~~---~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~  257 (539)
                      .        ...+....+ ..++.+.+..|.-.+.   ..++..+.+.|++|.+|++|++|..+++     .+.-+  ..
T Consensus       120 ~~ld~~~i~~~eP~l~~~-~~aal~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-----g~~~~--~~  191 (429)
T COG0579         120 EILDKEEIKELEPLLNEG-AVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSD-----GVFVL--NT  191 (429)
T ss_pred             eecCHHHHHhhCcccccc-ceeeEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-----ceEEE--Ee
Confidence            0        001111111 2233333333432222   2356667778999999999999999887     22222  23


Q ss_pred             CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCC
Q 009241          258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGP  295 (539)
Q Consensus       258 ~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~  295 (539)
                      .+|++. ++     +|.||.|||. .+-+|+.++|+.+
T Consensus       192 ~~g~~~-~~-----ak~Vin~AGl-~Ad~la~~~g~~~  222 (429)
T COG0579         192 SNGEET-LE-----AKFVINAAGL-YADPLAQMAGIPE  222 (429)
T ss_pred             cCCcEE-EE-----eeEEEECCch-hHHHHHHHhCCCc
Confidence            356543 43     8999999997 6788888898865

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.21  E-value=2e-10  Score=123.93  Aligned_cols=56  Identities=20%  Similarity=0.221  Sum_probs=41.7

Q ss_pred             hhhhcCCC-CcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          218 LLEYANPS-GLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       218 ~l~~~~~~-gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      +...+++. |+++++++.|++|+.+++     +|+||.+.+ .++....+     .++.||||+|++.
T Consensus       138 L~~~a~~~ggV~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~g~~~~i-----~AkaVILATGG~~  195 (608)
T PRK06854        138 VAEAAKKALGDNVLNRVFITDLLVDDN-----RIAGAVGFSVRENKFYVF-----KAKAVIVATGGAA  195 (608)
T ss_pred             HHHHHHhcCCCEEEeCCEEEEEEEeCC-----EEEEEEEEEccCCcEEEE-----ECCEEEECCCchh
Confidence            33444444 599999999999998765     899997644 34544444     3899999999986

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.21  E-value=1.1e-10  Score=112.00  Aligned_cols=36  Identities=28%  Similarity=0.339  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+|||+|||+|++|+++|++|++ |.+|+||||...
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~   59 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLS   59 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            457999999999999999999999 999999999864

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.19  E-value=7.6e-10  Score=116.61  Aligned_cols=38  Identities=39%  Similarity=0.587  Sum_probs=34.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      ..+||||||||.+|+++|..||+ |++|+||||......
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG   40 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGG   40 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCc
Confidence            36899999999999999999999 999999999876543

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.19  E-value=1.6e-11  Score=124.74  Aligned_cols=60  Identities=28%  Similarity=0.340  Sum_probs=43.5

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      +...+++.|++|+++++|++|..+++     +++||.+.  +|+   +.     ++.||+|+|. +++.|+-..++
T Consensus       153 l~~~~~~~Gv~i~~~~~V~~i~~~~~-----~v~gv~~~--~g~---i~-----ad~vV~a~G~-~s~~l~~~~~~  212 (358)
T PF01266_consen  153 LAAEAQRAGVEIRTGTEVTSIDVDGG-----RVTGVRTS--DGE---IR-----ADRVVLAAGA-WSPQLLPLLGL  212 (358)
T ss_dssp             HHHHHHHTT-EEEESEEEEEEEEETT-----EEEEEEET--TEE---EE-----ECEEEE--GG-GHHHHHHTTTT
T ss_pred             hHHHHHHhhhhccccccccchhhccc-----cccccccc--ccc---cc-----cceeEecccc-cceeeeecccc
Confidence            44456677999999999999999987     88888764  453   33     7999999997 67777766543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR02730 carot_isom carotene isomerase

Probab=99.18  E-value=1.1e-08  Score=108.70  Aligned_cols=71  Identities=20%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             eecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          205 IIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       205 ~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +++.+|...-...+.+.+++.|++|+++++|++|..+++     ++.+|.+.  +|+.  +     .++.||+|+|...+
T Consensus       222 ~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~--~g~~--~-----~ad~vV~a~~~~~~  287 (493)
T TIGR02730       222 NYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENG-----KAVGVKLA--DGEK--I-----YAKRIVSNATRWDT  287 (493)
T ss_pred             ecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCChHHH
Confidence            344455433333355677788999999999999998765     88888765  4543  2     27899999998776


Q ss_pred             HHHHH
Q 009241          285 PQLLM  289 (539)
Q Consensus       285 p~lLl  289 (539)
                      -..|+
T Consensus       288 ~~~Ll  292 (493)
T TIGR02730       288 FGKLL  292 (493)
T ss_pred             HHHhC
Confidence            65554

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.18  E-value=2e-10  Score=129.52  Aligned_cols=51  Identities=14%  Similarity=0.113  Sum_probs=40.7

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      ..++++.+++.+++|+.+++     +|+||.+.+ .+|+.+.+.     +|.||||||+++.
T Consensus       155 ~~~i~~~~~~~~~~Li~~~g-----~v~Gv~~~~~~~g~~~~i~-----AkaVILATGG~g~  206 (897)
T PRK13800        155 RERIRIENRLMPVRVLTEGG-----RAVGAAALNTRTGEFVTVG-----AKAVILATGPCGR  206 (897)
T ss_pred             cCCcEEEeceeeEEEEeeCC-----EEEEEEEEecCCCcEEEEE-----CCEEEECCCcccc
Confidence            35799999999999998754     999998865 357655554     8999999999874

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.17  E-value=1.6e-10  Score=120.53  Aligned_cols=61  Identities=20%  Similarity=0.288  Sum_probs=46.3

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecC-CCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRN-KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~-~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      +...+++.|++|+++++|++|+.++ ++    +++||...+ ++  ..+     .+|.||||+|+++..+-++.
T Consensus       129 L~~~a~~~Gv~i~~~~~v~~l~~~~~~g----~v~gv~~~~-~~--~~i-----~ak~VIlAtGG~~~n~~~~~  190 (432)
T TIGR02485       129 LYSSAERLGVEIRYGIAVDRIPPEAFDG----AHDGPLTTV-GT--HRI-----TTQALVLAAGGLGANRDWLR  190 (432)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCCCC----eEEEEEEcC-Cc--EEE-----EcCEEEEcCCCcccCHHHHH
Confidence            4456677899999999999999873 33    899987642 22  334     37999999999998776654

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.16  E-value=3.6e-09  Score=112.41  Aligned_cols=71  Identities=18%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             CCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241          208 QNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQ  286 (539)
Q Consensus       208 ~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~  286 (539)
                      .+|...-...+.+.+++.|.+|+++++|++|..+++     ++++|.+.+. .|....+     .++.||+++....+.+
T Consensus       228 ~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~-----~~~gv~~~~~~~~~~~~~-----~ad~VI~~~~~~~~~~  297 (492)
T TIGR02733       228 HGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGG-----RAGWVVVVDSRKQEDLNV-----KADDVVANLPPQSLLE  297 (492)
T ss_pred             cCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCC-----eEEEEEEecCCCCceEEE-----ECCEEEECCCHHHHHH
Confidence            344333333355556668999999999999998876     7888887642 1222233     3789999998766555


Q ss_pred             HH
Q 009241          287 LL  288 (539)
Q Consensus       287 lL  288 (539)
                      ||
T Consensus       298 ll  299 (492)
T TIGR02733       298 LL  299 (492)
T ss_pred             hc
Confidence            43

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.15  E-value=1.2e-10  Score=103.91  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+.||+|||+|++|++||++||+ |.||+|+||.-.
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls   64 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS   64 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc
Confidence            46899999999999999999999 999999999754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.15  E-value=4.2e-11  Score=107.70  Aligned_cols=36  Identities=33%  Similarity=0.441  Sum_probs=30.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+|||+|||+|++|+++|+.|++ |+||+|+||...
T Consensus        15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~   51 (230)
T PF01946_consen   15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLS   51 (230)
T ss_dssp             HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS
T ss_pred             hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCC
Confidence            347999999999999999999999 999999999865

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.15  E-value=1.8e-10  Score=122.14  Aligned_cols=37  Identities=41%  Similarity=0.610  Sum_probs=34.3

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.++|||||||||+.|+++|+.|++ |++|+||||++.
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~   40 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDL   40 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4567999999999999999999999 999999999864

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.14  E-value=3.1e-10  Score=108.57  Aligned_cols=36  Identities=31%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+|||+|||+|++|+++|+.|++ |.+|+||||...
T Consensus        19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~   55 (254)
T TIGR00292        19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA   55 (254)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            347999999999999999999999 999999999975

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.14  E-value=2.1e-10  Score=121.11  Aligned_cols=57  Identities=28%  Similarity=0.357  Sum_probs=43.3

Q ss_pred             hhhhcCC-CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          218 LLEYANP-SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       218 ~l~~~~~-~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      +.+...+ .+++++.+..|++|+.++++    ++.||...+. +|+.+.++     +|.||+|+|+.+
T Consensus       144 L~~~~~~~~~~~~~~~~~~~~l~~~~~~----~v~Gvv~~~~~~g~~~~~~-----akavilaTGG~g  202 (562)
T COG1053         144 LYEQLLKFSGIEIFDEYFVLDLLVDDGG----GVAGVVARDLRTGELYVFR-----AKAVILATGGAG  202 (562)
T ss_pred             HHHHHHHhhcchhhhhhhhhhheecCCC----cEEEEEEEEecCCcEEEEe-----cCcEEEccCCce
Confidence            3444444 67789999999999988773    5999988765 45554443     799999999998

>PLN02661 Putative thiazole synthesis

Probab=99.13  E-value=2.2e-10  Score=112.45  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=32.6

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~   80 (539)
                      ..++||+|||+|++|+++|+.|++  |.+|+||||+..
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~  127 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS  127 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            457999999999999999999996  799999999764

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.13  E-value=5.8e-10  Score=117.08  Aligned_cols=32  Identities=31%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +||||||+|.+|+++|..|++ |.+|+||||++
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~   34 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI   34 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            699999999999999999999 99999999985

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.10  E-value=6.3e-10  Score=118.01  Aligned_cols=38  Identities=37%  Similarity=0.554  Sum_probs=35.0

Q ss_pred             CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           43 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        43 ~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|..+|||||||||+.|+++|+.|++ |.+|+||||+..
T Consensus         2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~   40 (502)
T PRK13369          2 AEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDL   40 (502)
T ss_pred             CCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            35667999999999999999999999 999999999964

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.10  E-value=1.1e-09  Score=114.69  Aligned_cols=36  Identities=33%  Similarity=0.646  Sum_probs=32.3

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGD   79 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~   79 (539)
                      .+.+|||||||||..|+++|+.|++ +  .+|+||||..
T Consensus        42 ~~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         42 GSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             cCCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            3457999999999999999999999 4  6999999985

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.09  E-value=2.7e-09  Score=109.98  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=57.8

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCCh---
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPA---  296 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~---  296 (539)
                      .+...|.++++.++|+.+..+++      +.||++.|. .|+.+.++     ++.||.|||. ++-.++...+..+.   
T Consensus       173 ~A~~~Ga~il~~~~v~~~~re~~------v~gV~~~D~~tg~~~~ir-----a~~VVNAaGp-W~d~i~~~~~~~~~~~~  240 (532)
T COG0578         173 DAAEHGAEILTYTRVESLRREGG------VWGVEVEDRETGETYEIR-----ARAVVNAAGP-WVDEILEMAGLEQSPHI  240 (532)
T ss_pred             HHHhcccchhhcceeeeeeecCC------EEEEEEEecCCCcEEEEE-----cCEEEECCCc-cHHHHHHhhcccCCCCc
Confidence            56778999999999999998763      899999985 46666664     8999999997 56666666654432   


Q ss_pred             hhhhhCCCcceecC
Q 009241          297 DHLKAHNITVVLDQ  310 (539)
Q Consensus       297 ~~l~~~gi~~~~~~  310 (539)
                      ......|++++.+.
T Consensus       241 ~vr~skGsHlVv~~  254 (532)
T COG0578         241 GVRPSKGSHLVVDK  254 (532)
T ss_pred             cceeccceEEEecc
Confidence            23345577776554

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.09  E-value=1.1e-09  Score=113.66  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=31.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +||||||+|..|+++|++|++ |.+|+||||++.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            699999999999999999999 999999999973

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.08  E-value=2.1e-10  Score=114.72  Aligned_cols=71  Identities=24%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             CCCcccchhh--hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          208 QNSQRHTAAD--LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       208 ~~g~r~~~~~--~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      .+|+...+..  .+. -|.+.|+.+.-..+|.+|+.++++    ++.|++++|. .|+++.|+     +|.||-|||-|.
T Consensus       217 yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~----kv~Ga~~rD~iTG~e~~I~-----Ak~VVNATGpfs  287 (680)
T KOG0042|consen  217 YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDG----KVIGARARDHITGKEYEIR-----AKVVVNATGPFS  287 (680)
T ss_pred             ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCC----ceeeeEEEEeecCcEEEEE-----EEEEEeCCCCcc
Confidence            3555554432  222 456789999999999999999885    8999999875 68877775     899999999875


Q ss_pred             cHHH
Q 009241          284 SPQL  287 (539)
Q Consensus       284 sp~l  287 (539)
                      -.-.
T Consensus       288 DsIr  291 (680)
T KOG0042|consen  288 DSIR  291 (680)
T ss_pred             HHHH
Confidence            4433

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.08  E-value=4.4e-09  Score=110.39  Aligned_cols=66  Identities=26%  Similarity=0.363  Sum_probs=44.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      +...+++.|++|+++++|++|..++++    .+. |.+.+ ..|...++.     ++.||+|||+ ++.+|+...|+.
T Consensus       184 L~~~a~~~Gv~i~~~t~V~~i~~~~~~----~v~-v~~~~~~~g~~~~i~-----A~~VV~AAG~-~s~~La~~~Gi~  250 (483)
T TIGR01320       184 LLGYLVQNGTTIRFGHEVRNLKRQSDG----SWT-VTVKNTRTGGKRTLN-----TRFVFVGAGG-GALPLLQKSGIP  250 (483)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCC----eEE-EEEeeccCCceEEEE-----CCEEEECCCc-chHHHHHHcCCC
Confidence            555666789999999999999876542    232 33332 234333343     8999999998 467777777664

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.07  E-value=1.8e-09  Score=111.87  Aligned_cols=36  Identities=36%  Similarity=0.564  Sum_probs=32.2

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc--C-CeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ--N-ASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~--G-~~VlvlEkG~~   80 (539)
                      ...|||+|||+|..|+++|++|++  | .+|+||||+..
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~   66 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL   66 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence            457999999999999999999997  7 49999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.06  E-value=1.3e-09  Score=111.70  Aligned_cols=35  Identities=37%  Similarity=0.416  Sum_probs=32.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+|||+|||+|..|+++|++|++ |.+|+||||+..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            36999999999999999999999 999999999864

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.04  E-value=4.5e-09  Score=110.43  Aligned_cols=36  Identities=33%  Similarity=0.484  Sum_probs=32.3

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      +..+||||||||..|+++|++|++   |.+|+||||...
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            446999999999999999999998   679999999864

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.04  E-value=7.7e-10  Score=116.25  Aligned_cols=37  Identities=30%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .+.++||+|||+|..|+++|++|++   |.+|+|||++..
T Consensus        21 ~~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        21 GDTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             CCceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            3557999999999999999999998   679999999863

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=99.02  E-value=2.9e-09  Score=106.63  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=43.7

Q ss_pred             hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          218 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       218 ~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      ++. ..+++|++|+.++.+.+|+.+++.    .+.||.+.+.+++...+     .++.||||+|+++
T Consensus       139 L~~~v~~~p~I~v~e~~~a~~li~~~~~----~~~Gv~~~~~~~~~~~~-----~a~~vVLATGG~g  196 (518)
T COG0029         139 LLKKVRNRPNITVLEGAEALDLIIEDGI----GVAGVLVLNRNGELGTF-----RAKAVVLATGGLG  196 (518)
T ss_pred             HHHHHhcCCCcEEEecchhhhhhhcCCc----eEeEEEEecCCCeEEEE-----ecCeEEEecCCCc
Confidence            444 345589999999999999999872    56699998654434444     4899999999875

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.00  E-value=2.7e-09  Score=109.50  Aligned_cols=33  Identities=42%  Similarity=0.666  Sum_probs=31.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |||||||+|..|+++|++|++ |.+|+||||+..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            799999999999999999999 999999999764

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.99  E-value=3.1e-10  Score=117.76  Aligned_cols=59  Identities=20%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      .+.+.|++|+++|.|..++.+++     +|++|.+.++.| ..++     .++.||-|+|-   -.|+.++|+
T Consensus        99 ~l~e~gv~v~~~t~v~~v~~~~~-----~i~~V~~~~~~g-~~~i-----~A~~~IDaTG~---g~l~~~aG~  157 (428)
T PF12831_consen   99 MLAEAGVEVLLGTRVVDVIRDGG-----RITGVIVETKSG-RKEI-----RAKVFIDATGD---GDLAALAGA  157 (428)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccc-----cccccccccccc-cccc-----ccccccccccc---ccccccccc
Confidence            45678999999999999999876     999999987666 4455     48999999993   466667765

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.98  E-value=5.5e-09  Score=108.65  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=29.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ||+|||+|.+|+++|++|++ |.+|+||||+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            79999999999999999999 99999999985

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.96  E-value=4.2e-09  Score=108.51  Aligned_cols=34  Identities=35%  Similarity=0.741  Sum_probs=31.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .|||+|||||.+|+++|++|++   |.+|+||||+..
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            4899999999999999999997   789999999863

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.94  E-value=3.3e-09  Score=110.20  Aligned_cols=36  Identities=42%  Similarity=0.718  Sum_probs=33.4

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ++|||||||+|++|+++|+.|++ |.+|+||||++.+
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~   40 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSA   40 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence            36999999999999999999999 9999999999753

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.89  E-value=5.9e-09  Score=98.08  Aligned_cols=55  Identities=24%  Similarity=0.408  Sum_probs=45.0

Q ss_pred             CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccH-HHHH
Q 009241          225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP-QLLM  289 (539)
Q Consensus       225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp-~lLl  289 (539)
                      .-++|..|++|++|..+++     +|.||++.|.+|+...+.     .+.||+|+|+|+-. .-|+
T Consensus       158 e~~ki~~nskvv~il~n~g-----kVsgVeymd~sgek~~~~-----~~~VVlatGGf~ysd~~lL  213 (477)
T KOG2404|consen  158 ELVKILLNSKVVDILRNNG-----KVSGVEYMDASGEKSKII-----GDAVVLATGGFGYSDKELL  213 (477)
T ss_pred             HHHhhhhcceeeeeecCCC-----eEEEEEEEcCCCCcccee-----cCceEEecCCcCcChHHHH
Confidence            3489999999999996665     999999999888766554     79999999999863 4444

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.89  E-value=2.5e-08  Score=94.44  Aligned_cols=35  Identities=37%  Similarity=0.510  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|.+|+++|.+||+ |.+|+|||+-+.
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge   39 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE   39 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence            47999999999999999999999 999999998664

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.89  E-value=8.4e-09  Score=106.24  Aligned_cols=36  Identities=39%  Similarity=0.750  Sum_probs=33.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .+|||||||+|+||++||+.|++ |.+|+||||+..+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            47999999999999999999999 9999999999864

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.86  E-value=8.2e-09  Score=105.38  Aligned_cols=33  Identities=33%  Similarity=0.585  Sum_probs=31.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |||+|||+|.+|+++|++|++ |.+|+||||+..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            699999999999999999999 999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.85  E-value=1.8e-08  Score=95.81  Aligned_cols=40  Identities=33%  Similarity=0.441  Sum_probs=35.8

Q ss_pred             CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           43 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        43 ~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      .+.+..|+||||+|.-|+++|++||+ |.++++||+-+.+.
T Consensus         3 ~~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph   43 (399)
T KOG2820|consen    3 EMVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPH   43 (399)
T ss_pred             ccccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCc
Confidence            35667999999999999999999999 99999999987643

>TIGR00275 flavoprotein, HI0933 family

Probab=98.85  E-value=1.9e-08  Score=103.55  Aligned_cols=30  Identities=47%  Similarity=0.711  Sum_probs=28.6

Q ss_pred             EEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           51 IVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        51 iVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ||||+|++|+++|+.|++ |.+|+||||++.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~   31 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKK   31 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcc
Confidence            699999999999999999 999999999875

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.84  E-value=1.6e-08  Score=106.63  Aligned_cols=35  Identities=43%  Similarity=0.680  Sum_probs=32.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..+|||||||||+||+.||+.||+ |.+|+|||+..
T Consensus         2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~   37 (618)
T PRK05192          2 PEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL   37 (618)
T ss_pred             CccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc
Confidence            346999999999999999999999 99999999874

>PRK10015 oxidoreductase; Provisional

Probab=98.84  E-value=2.6e-08  Score=103.42  Aligned_cols=36  Identities=42%  Similarity=0.701  Sum_probs=33.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ++|||||||+|++|+++|+.|++ |.+|+||||++.+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~   40 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSA   40 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            46999999999999999999999 9999999999753

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.84  E-value=4.6e-08  Score=100.97  Aligned_cols=43  Identities=33%  Similarity=0.400  Sum_probs=38.2

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPN   86 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~   86 (539)
                      |+++|||||||+|.+|+++|..|++ |+|||+||+.+...+...
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~a   44 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESA   44 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccc
Confidence            4668999999999999999999999 999999999988665443

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.83  E-value=1.1e-07  Score=99.41  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERG   78 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG   78 (539)
                      ...+||||||||.+|+++|+.|++   +.+|+||||-
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~   40 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL   40 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence            457899999999999999999999   6999999993

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.81  E-value=3e-08  Score=103.48  Aligned_cols=63  Identities=19%  Similarity=0.342  Sum_probs=47.2

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+++.|++++++|+|++|+.+.++ ..++|+||++.. +|+...+.+.  +++.||+++|++..
T Consensus       232 L~~~Le~~GV~f~~~t~VtdL~~~~d~-~~~~VtgI~~~~-~~~~~~I~l~--~~DlVivTnGs~t~  294 (576)
T PRK13977        232 LIKYLEDHGVDFQYGTKVTDIDFDITG-GKKTATAIHLTR-NGKEETIDLT--EDDLVFVTNGSITE  294 (576)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCC-CceEEEEEEEEe-CCceeEEEec--CCCEEEEeCCcCcc
Confidence            455778899999999999999986221 123899999975 3444444433  79999999999864

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.77  E-value=5.2e-08  Score=107.06  Aligned_cols=33  Identities=39%  Similarity=0.562  Sum_probs=31.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ++||||||+|.+|+++|+.|++ |.+|+||||+.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            5899999999999999999999 99999999985

>PRK06185 hypothetical protein; Provisional

Probab=98.73  E-value=8.5e-08  Score=99.41  Aligned_cols=37  Identities=32%  Similarity=0.505  Sum_probs=33.9

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +..+|||+|||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus         3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            4567999999999999999999999 999999999863

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.72  E-value=1.3e-07  Score=97.20  Aligned_cols=36  Identities=36%  Similarity=0.578  Sum_probs=33.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..++||||||+|.+|+++|++|++ |.+|+|+|+...
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~   38 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA   38 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            457899999999999999999999 999999999875

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=98.71  E-value=6.5e-07  Score=88.41  Aligned_cols=72  Identities=18%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             ecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccH
Q 009241          206 IDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSP  285 (539)
Q Consensus       206 ~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp  285 (539)
                      ++.+|...-+..+.+.+++.|.+|.+++.|..|+.|++     +++||.+.  +|++.  +     +|.||-.|+-+.|=
T Consensus       258 Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~g-----ka~GV~L~--dG~ev--~-----sk~VvSNAt~~~Tf  323 (561)
T KOG4254|consen  258 YPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSG-----KAVGVRLA--DGTEV--R-----SKIVVSNATPWDTF  323 (561)
T ss_pred             CCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCC-----eEEEEEec--CCcEE--E-----eeeeecCCchHHHH
Confidence            34455444444466788899999999999999999995     99999998  67653  2     58888889988877


Q ss_pred             HHHHhc
Q 009241          286 QLLMLS  291 (539)
Q Consensus       286 ~lLl~S  291 (539)
                      .-|+.-
T Consensus       324 ~kLlp~  329 (561)
T KOG4254|consen  324 EKLLPG  329 (561)
T ss_pred             HHhCCC
Confidence            555543

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.66  E-value=1.5e-07  Score=99.45  Aligned_cols=36  Identities=33%  Similarity=0.574  Sum_probs=33.0

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |..+|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   37 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK   37 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            3457999999999999999999999 99999999963

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.65  E-value=1.7e-07  Score=97.87  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=33.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ....+|+|||+|++|+++|.+|.+ |.+|+|+||++.
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~   44 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ   44 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            345789999999999999999999 999999999875

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.65  E-value=1.7e-07  Score=98.70  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=32.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +.+|||||||+|++|..+|.+|++ |.+|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            457999999999999999999999 99999999975

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.64  E-value=6e-08  Score=90.16  Aligned_cols=59  Identities=15%  Similarity=0.289  Sum_probs=34.9

Q ss_pred             hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241          218 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS  291 (539)
Q Consensus       218 ~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S  291 (539)
                      |+. .+++.+++++++++|+++..+++     + .-|.+  .++  +.+.     ++.||+|+|.+..|+.+..-
T Consensus        87 yl~~~~~~~~l~i~~~~~V~~v~~~~~-----~-w~v~~--~~~--~~~~-----a~~VVlAtG~~~~p~~p~~~  146 (203)
T PF13738_consen   87 YLQEYAERFGLEIRFNTRVESVRRDGD-----G-WTVTT--RDG--RTIR-----ADRVVLATGHYSHPRIPDIP  146 (203)
T ss_dssp             HHHHHHHHTTGGEETS--EEEEEEETT-----T-EEEEE--TTS---EEE-----EEEEEE---SSCSB---S-T
T ss_pred             HHHHHHhhcCcccccCCEEEEEEEecc-----E-EEEEE--Eec--ceee-----eeeEEEeeeccCCCCccccc
Confidence            444 55667888999999999999876     3 23433  355  2333     69999999999999887644

...

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.63  E-value=9.2e-07  Score=88.78  Aligned_cols=66  Identities=29%  Similarity=0.405  Sum_probs=48.5

Q ss_pred             hhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          218 LLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       218 ~l~~~-~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      ++..+ ++.|+++.++++|+.|...+++     -.-|.+.+. .|....+.     ++-|+|.||+ ++=.||.+|||.
T Consensus       187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg-----~W~v~~~~~~~~~~~~v~-----a~FVfvGAGG-~aL~LLqksgi~  254 (488)
T PF06039_consen  187 LVEYLQKQKGFELHLNHEVTDIKRNGDG-----RWEVKVKDLKTGEKREVR-----AKFVFVGAGG-GALPLLQKSGIP  254 (488)
T ss_pred             HHHHHHhCCCcEEEecCEeCeeEECCCC-----CEEEEEEecCCCCeEEEE-----CCEEEECCch-HhHHHHHHcCCh
Confidence            55544 4459999999999999998773     234444442 45555554     8999999999 677888899884

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.63  E-value=3.4e-07  Score=95.19  Aligned_cols=39  Identities=31%  Similarity=0.527  Sum_probs=35.2

Q ss_pred             CCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           42 AKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        42 ~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+..+|||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus        13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         13 STRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             CCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            344557999999999999999999999 999999999875

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.63  E-value=9.1e-08  Score=92.47  Aligned_cols=55  Identities=18%  Similarity=0.280  Sum_probs=43.9

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ  286 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~  286 (539)
                      .+...|+++..+ .|+.|+.+++     .|.||.+.++.|++.+..     |..-|+|-|.|..=|
T Consensus       157 a~slpNV~~eeG-tV~sLlee~g-----vvkGV~yk~k~gee~~~~-----ApLTvVCDGcfSnlR  211 (509)
T KOG1298|consen  157 AASLPNVRLEEG-TVKSLLEEEG-----VVKGVTYKNKEGEEVEAF-----APLTVVCDGCFSNLR  211 (509)
T ss_pred             HhcCCCeEEeee-eHHHHHhccC-----eEEeEEEecCCCceEEEe-----cceEEEecchhHHHH
Confidence            556789998655 5888888776     899999999888776654     899999999986543

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.62  E-value=9.2e-08  Score=95.70  Aligned_cols=47  Identities=19%  Similarity=0.403  Sum_probs=35.4

Q ss_pred             cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          222 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       222 ~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      ....|++|+ +++|+.|..+++     +|.||...  +|..  +.     ++.||+|+|.|.
T Consensus       106 ~~~~nl~i~-~~~V~~l~~e~~-----~v~GV~~~--~g~~--~~-----a~~vVlaTGtfl  152 (392)
T PF01134_consen  106 ESHPNLTII-QGEVTDLIVENG-----KVKGVVTK--DGEE--IE-----ADAVVLATGTFL  152 (392)
T ss_dssp             HTSTTEEEE-ES-EEEEEECTT-----EEEEEEET--TSEE--EE-----ECEEEE-TTTGB
T ss_pred             hcCCCeEEE-EcccceEEecCC-----eEEEEEeC--CCCE--Ee-----cCEEEEeccccc
Confidence            345899996 679999999887     99998775  5653  33     799999999944

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.60  E-value=4.7e-07  Score=93.37  Aligned_cols=36  Identities=33%  Similarity=0.525  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            457999999999999999999999 999999999864

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.59  E-value=5.4e-07  Score=96.87  Aligned_cols=58  Identities=17%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|+.++.+++|+.++++    +|+||.+.+ .+|+.+.+.     +|.||||||+++.
T Consensus       132 L~~~~~~~gi~i~~~~~~~~Li~~~~g----~v~Gv~~~~~~~g~~~~i~-----AkaVVLATGG~~~  190 (570)
T PRK05675        132 LYQGNLKNGTTFLNEWYAVDLVKNQDG----AVVGVIAICIETGETVYIK-----SKATVLATGGAGR  190 (570)
T ss_pred             HHHHHhccCCEEEECcEEEEEEEcCCC----eEEEEEEEEcCCCcEEEEe-----cCeEEECCCCccc
Confidence            444566789999999999999987554    999999865 466655553     8999999999985

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.58  E-value=4.4e-07  Score=95.69  Aligned_cols=34  Identities=26%  Similarity=0.447  Sum_probs=31.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY   37 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            36999999999999999999999 99999999974

>PLN02985 squalene monooxygenase

Probab=98.56  E-value=3.3e-07  Score=97.07  Aligned_cols=37  Identities=30%  Similarity=0.448  Sum_probs=33.6

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+..+||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            4557999999999999999999999 999999999753

>PLN02507 glutathione reductase

Probab=98.56  E-value=5.8e-07  Score=95.15  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=31.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER   77 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk   77 (539)
                      ..+|||||||+|++|..+|.+|++ |++|+|+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            347999999999999999999999 999999997

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.55  E-value=4.3e-07  Score=95.72  Aligned_cols=34  Identities=35%  Similarity=0.499  Sum_probs=32.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||||||+|++|+.+|.+|++ |.+|+|+||+.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            46999999999999999999999 99999999975

>PRK07208 hypothetical protein; Provisional

Probab=98.55  E-value=1.2e-06  Score=92.88  Aligned_cols=39  Identities=26%  Similarity=0.258  Sum_probs=34.9

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      |++..||+|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G   40 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG   40 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            3567899999999999999999999 99999999987643

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.53  E-value=5.6e-07  Score=94.84  Aligned_cols=36  Identities=33%  Similarity=0.479  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +.+|||+|||+|++|+.+|.+|++ |.+|+|+||++.
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~   39 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRN   39 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccc
Confidence            346999999999999999999999 999999999754

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.52  E-value=4.9e-07  Score=94.57  Aligned_cols=34  Identities=47%  Similarity=0.635  Sum_probs=32.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||||||||+||+.+|.+|++ |.+|+|+||++.
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~   37 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKA   37 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            6999999999999999999999 999999999863

>PRK06847 hypothetical protein; Provisional

Probab=98.50  E-value=4.9e-07  Score=92.64  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=32.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+..||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          2 AAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            346799999999999999999999 999999999764

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.49  E-value=4.8e-07  Score=89.23  Aligned_cols=33  Identities=42%  Similarity=0.675  Sum_probs=31.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            799999999999999999999 999999999875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.48  E-value=3.9e-07  Score=93.92  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=54.9

Q ss_pred             eeeeecCCCcccchhh---hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEc
Q 009241          202 GGTIIDQNSQRHTAAD---LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVS  278 (539)
Q Consensus       202 ~~~~~~~~g~r~~~~~---~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlA  278 (539)
                      ++-+.+.+|.-.+...   +...|++.|+.|+.+|.|++|....+     +..||+..  .|..        .+..||-|
T Consensus       174 g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~--~G~i--------et~~~VNa  238 (856)
T KOG2844|consen  174 GGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP--HGSI--------ETECVVNA  238 (856)
T ss_pred             eeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc--Ccce--------ecceEEec
Confidence            4445567887776643   44578889999999999999998877     45588775  5654        26889999


Q ss_pred             CCCcccHHHHHhcCC
Q 009241          279 AGALGSPQLLMLSGV  293 (539)
Q Consensus       279 aG~~~sp~lLl~SGi  293 (539)
                      ||.+. -..-.++|+
T Consensus       239 aGvWA-r~Vg~m~gv  252 (856)
T KOG2844|consen  239 AGVWA-REVGAMAGV  252 (856)
T ss_pred             hhHHH-HHhhhhcCC
Confidence            99876 333444554

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.48  E-value=3.9e-07  Score=88.93  Aligned_cols=66  Identities=18%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe----CCCCe-----EEEEeccCCCCeEEEcCCCccc--HHHHH
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD----ATDAE-----HIAYLRNGPKNEIIVSAGALGS--PQLLM  289 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~----~~g~~-----~~~~~~~~~a~~VVlAaG~~~s--p~lLl  289 (539)
                      .++..|++|+..+.+..+++++++    .|.||...|    ++|..     .-.++   -++.-|+|-|.-++  .+++.
T Consensus       192 kAEe~GvEiyPg~aaSevly~edg----sVkGiaT~D~GI~k~G~pKd~FerGme~---hak~TifAEGc~G~Lskqi~k  264 (621)
T KOG2415|consen  192 KAEELGVEIYPGFAASEVLYDEDG----SVKGIATNDVGISKDGAPKDTFERGMEF---HAKVTIFAEGCHGSLSKQIIK  264 (621)
T ss_pred             HHHhhCceeccccchhheeEcCCC----cEeeEeeccccccCCCCcccccccccee---cceeEEEeccccchhHHHHHH
Confidence            678899999999999999999886    899998754    23321     11111   27889999886554  56666


Q ss_pred             hcCC
Q 009241          290 LSGV  293 (539)
Q Consensus       290 ~SGi  293 (539)
                      +-++
T Consensus       265 kf~L  268 (621)
T KOG2415|consen  265 KFDL  268 (621)
T ss_pred             HhCc
Confidence            5544

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.47  E-value=1e-06  Score=81.59  Aligned_cols=32  Identities=28%  Similarity=0.528  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +++|||+|++|+++|+.|++ |..|+|+|||.-
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G   35 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG   35 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence            69999999999999999999 999999999963

>PRK08244 hypothetical protein; Provisional

Probab=98.47  E-value=1.1e-06  Score=93.47  Aligned_cols=34  Identities=35%  Similarity=0.595  Sum_probs=32.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5899999999999999999999 999999999864

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.46  E-value=3.8e-06  Score=86.24  Aligned_cols=57  Identities=14%  Similarity=0.079  Sum_probs=41.9

Q ss_pred             hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHH
Q 009241          219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL  287 (539)
Q Consensus       219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~l  287 (539)
                      .+..++.|++++++++|+++..+++     ++..+...  +|....+.     ++.||||+|.+.+..|
T Consensus       266 ~~~l~~~Gv~I~~g~~V~~v~~~~~-----~V~~v~~~--~g~~~~i~-----AD~VVLAtGrf~s~GL  322 (422)
T PRK05329        266 RRAFERLGGRIMPGDEVLGAEFEGG-----RVTAVWTR--NHGDIPLR-----ARHFVLATGSFFSGGL  322 (422)
T ss_pred             HHHHHhCCCEEEeCCEEEEEEEeCC-----EEEEEEee--CCceEEEE-----CCEEEEeCCCcccCce
Confidence            3455678999999999999987765     67776532  45554554     7999999998755544

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.8e-06  Score=89.73  Aligned_cols=37  Identities=27%  Similarity=0.459  Sum_probs=33.8

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCe-EEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~~   80 (539)
                      ..+.+||+|||+|.+|+++|++|.+ |.. ++|+||...
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~   43 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDD   43 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCC
Confidence            4557999999999999999999999 987 999999975

>PLN02697 lycopene epsilon cyclase

Probab=98.44  E-value=1.4e-06  Score=91.88  Aligned_cols=35  Identities=34%  Similarity=0.379  Sum_probs=32.0

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ...|||||||+|++|+++|..|++ |.+|+|||+..
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~  141 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDL  141 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcc
Confidence            346999999999999999999999 99999999863

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.44  E-value=7.3e-07  Score=91.75  Aligned_cols=31  Identities=45%  Similarity=0.805  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      |||||||+|++|+++|+.|++ |.+|+||||.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            799999999999999999999 9999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06126 hypothetical protein; Provisional

Probab=98.44  E-value=3.8e-06  Score=90.49  Aligned_cols=36  Identities=33%  Similarity=0.581  Sum_probs=33.2

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +.++||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            457999999999999999999999 999999999763

>PRK07045 putative monooxygenase; Reviewed

Probab=98.43  E-value=2.4e-06  Score=87.93  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      +.++||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus         3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            356999999999999999999999 9999999999753

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.41  E-value=2.4e-06  Score=88.01  Aligned_cols=35  Identities=37%  Similarity=0.595  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            36899999999999999999999 999999999875

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.41  E-value=1.9e-06  Score=88.58  Aligned_cols=33  Identities=30%  Similarity=0.614  Sum_probs=31.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ||+|||+|++|+++|+.|++ |.+|+|+||.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            89999999999999999999 9999999999753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.40  E-value=1.5e-06  Score=90.01  Aligned_cols=33  Identities=30%  Similarity=0.545  Sum_probs=31.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      |||+|||+|++|+++|..|++ |  .+|+|+||.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            899999999999999999999 7  89999999864

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.38  E-value=2.4e-06  Score=91.81  Aligned_cols=36  Identities=36%  Similarity=0.528  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..++||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            456999999999999999999999 999999999875

>PLN02463 lycopene beta cyclase

Probab=98.38  E-value=2.6e-06  Score=88.43  Aligned_cols=35  Identities=31%  Similarity=0.521  Sum_probs=32.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ...|||||||+|++|+++|..|++ |.+|+|||+.+
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            446999999999999999999999 99999999975

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.38  E-value=5.4e-06  Score=84.14  Aligned_cols=60  Identities=13%  Similarity=0.110  Sum_probs=45.7

Q ss_pred             hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      ...+++.|++++.+++|+++..+++     ++++|...  ++....+     .++.||||+|+|-|..|+..
T Consensus       270 ~~~~~~~Gg~il~g~~V~~i~~~~~-----~v~~V~t~--~g~~~~l-----~AD~vVLAaGaw~S~gL~a~  329 (419)
T TIGR03378       270 KHRFEQLGGVMLPGDRVLRAEFEGN-----RVTRIHTR--NHRDIPL-----RADHFVLASGSFFSNGLVAE  329 (419)
T ss_pred             HHHHHHCCCEEEECcEEEEEEeeCC-----eEEEEEec--CCccceE-----ECCEEEEccCCCcCHHHHhh
Confidence            3455678999999999999998876     88887654  3322334     37999999999978888554

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.36  E-value=1.9e-06  Score=91.01  Aligned_cols=32  Identities=47%  Similarity=0.741  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |||||||+|.+|+.+|..+++ |.+|+|||+.+
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccc
Confidence            799999999999999999999 99999999975

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK07190 hypothetical protein; Provisional

Probab=98.35  E-value=2.2e-06  Score=90.43  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=32.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~   39 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDG   39 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            45899999999999999999999 999999999875

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.35  E-value=2.4e-06  Score=88.10  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=32.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            5899999999999999999999 999999999874

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.34  E-value=4.6e-06  Score=85.97  Aligned_cols=32  Identities=38%  Similarity=0.609  Sum_probs=30.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +||||||+|++|+++|+.|++ |.+|+||||..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCC
Confidence            699999999999999999999 99999999964

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.33  E-value=1.5e-06  Score=93.40  Aligned_cols=35  Identities=34%  Similarity=0.639  Sum_probs=32.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+.|||+|||||+||+++|.+|++ |.+|+|+|++.
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~   37 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD   37 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            446999999999999999999999 99999999964

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.33  E-value=3e-06  Score=87.83  Aligned_cols=33  Identities=36%  Similarity=0.625  Sum_probs=31.6

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||+|||+|++|+++|+.|++ |.+|+|+||.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            5899999999999999999999 99999999986

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.33  E-value=4.6e-06  Score=89.70  Aligned_cols=57  Identities=14%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|++++.|++|+.+++     +|+||.+.+ .+|....+.     +|.||||||+++.
T Consensus       125 L~~~~~~~gi~i~~~~~~~~Li~~~g-----~v~Ga~~~~~~~g~~~~i~-----AkaVILATGG~~~  182 (565)
T TIGR01816       125 LYQQNLKADTSFFNEYFALDLLMEDG-----ECRGVIAYCLETGEIHRFR-----AKAVVLATGGYGR  182 (565)
T ss_pred             HHHHHHhCCCEEEeccEEEEEEeeCC-----EEEEEEEEEcCCCcEEEEE-----eCeEEECCCCccc
Confidence            44456678999999999999998754     999998865 356655553     7999999999975

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PTZ00058 glutathione reductase; Provisional

Probab=98.33  E-value=5e-07  Score=96.30  Aligned_cols=34  Identities=41%  Similarity=0.646  Sum_probs=32.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||||||+|++|..+|.+|++ |.+|+||||+.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~   81 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY   81 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEeccc
Confidence            47999999999999999999999 99999999974

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=98.33  E-value=4.7e-06  Score=80.81  Aligned_cols=35  Identities=31%  Similarity=0.507  Sum_probs=32.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+|||+|||+|++|-+||+++++ |++...+|+...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~   73 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGT   73 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCc
Confidence            58999999999999999999999 999999999653

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.32  E-value=3.9e-06  Score=86.48  Aligned_cols=36  Identities=36%  Similarity=0.516  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||||||+|++|+++|..|++ |.+|+|||+.+.
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~   39 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP   39 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            346999999999999999999999 999999999753

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.31  E-value=1.8e-07  Score=94.77  Aligned_cols=35  Identities=34%  Similarity=0.628  Sum_probs=30.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      +|||+|||+|++|+++|..|++ |.+|+|+||.+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            5899999999999999999999 9999999998753

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06834 hypothetical protein; Provisional

Probab=98.31  E-value=4.2e-06  Score=88.44  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=32.1

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5899999999999999999999 999999999864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.31  E-value=3.6e-07  Score=95.67  Aligned_cols=34  Identities=41%  Similarity=0.709  Sum_probs=31.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ++|||+|||+|++|+.+|.+|++ |.+|+|+||+.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~   35 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK   35 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence            36999999999999999999999 99999999964

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.30  E-value=5.6e-06  Score=82.50  Aligned_cols=52  Identities=17%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCC
Q 009241          216 ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGA  281 (539)
Q Consensus       216 ~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~  281 (539)
                      .++.+.....|++++++|+|+.|++.++     .+.+|...  +|..  +     .++.||||-|=
T Consensus       177 kni~~~l~~~G~ei~f~t~VeDi~~~~~-----~~~~v~~~--~g~~--i-----~~~~vvlA~Gr  228 (486)
T COG2509         177 KNIREYLESLGGEIRFNTEVEDIEIEDN-----EVLGVKLT--KGEE--I-----EADYVVLAPGR  228 (486)
T ss_pred             HHHHHHHHhcCcEEEeeeEEEEEEecCC-----ceEEEEcc--CCcE--E-----ecCEEEEccCc
Confidence            3455577789999999999999999887     67777665  5644  2     37999999994

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.30  E-value=3.8e-06  Score=86.74  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ....||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            345899999999999999999999 999999999864

>PRK06370 mercuric reductase; Validated

Probab=98.30  E-value=4.7e-07  Score=95.41  Aligned_cols=36  Identities=53%  Similarity=0.761  Sum_probs=33.3

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |..+|||||||+|++|+.+|.+|++ |.+|+|+||+.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            4557999999999999999999999 99999999974

>PRK06116 glutathione reductase; Validated

Probab=98.29  E-value=4.7e-07  Score=95.08  Aligned_cols=35  Identities=40%  Similarity=0.582  Sum_probs=32.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +.+|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~   37 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKR   37 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            347999999999999999999999 99999999963

>PRK06184 hypothetical protein; Provisional

Probab=98.28  E-value=2.8e-06  Score=90.54  Aligned_cols=34  Identities=29%  Similarity=0.535  Sum_probs=32.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++||+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~   37 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE   37 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5899999999999999999999 999999999864

>PRK08013 oxidoreductase; Provisional

Probab=98.27  E-value=4e-06  Score=86.65  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=32.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            5899999999999999999999 999999999875

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.26  E-value=7.7e-06  Score=84.08  Aligned_cols=32  Identities=41%  Similarity=0.645  Sum_probs=31.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .+||+|||+|++|+++|..|++ |.+|+||||.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            5899999999999999999999 9999999998

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=98.26  E-value=1.1e-06  Score=78.21  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=30.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      +.||||||+|.+|+++|+..++   ..+|.|||..-.
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa  112 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA  112 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence            5799999999999999999996   689999999754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.25  E-value=5.8e-07  Score=92.63  Aligned_cols=35  Identities=40%  Similarity=0.639  Sum_probs=32.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..+||+||||+|++|.++|.+|++ |.||+|+|+++
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            457999999999999999999999 98899999995

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.24  E-value=6.3e-07  Score=93.89  Aligned_cols=33  Identities=33%  Similarity=0.480  Sum_probs=31.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||+|||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~   35 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPR   35 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCc
Confidence            6999999999999999999999 99999999953

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK11445 putative oxidoreductase; Provisional

Probab=98.23  E-value=4.3e-06  Score=84.74  Aligned_cols=33  Identities=33%  Similarity=0.573  Sum_probs=30.8

Q ss_pred             ccEEEECCCcchHHHHHhhhcCCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQNASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~   80 (539)
                      |||+|||+|++|+++|..|++..+|+||||.+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGKMKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhccCCEEEEECCCc
Confidence            899999999999999999988789999999864

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.23  E-value=1.4e-06  Score=92.24  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=27.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -|+|||+|++|+++|..|.+ |.+|+++||.+.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            49999999999999999999 999999999876

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK07588 hypothetical protein; Provisional

Probab=98.23  E-value=3.7e-06  Score=86.67  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            79999999999999999999 999999999864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.23  E-value=5.2e-06  Score=88.59  Aligned_cols=34  Identities=26%  Similarity=0.442  Sum_probs=30.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ...|||+|||||++|+++|.+|++ |++|+|+|+.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~  243 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER  243 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            446999999999999999999999 9999999763

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.22  E-value=9.8e-07  Score=65.87  Aligned_cols=29  Identities=31%  Similarity=0.524  Sum_probs=27.0

Q ss_pred             EECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           52 VIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        52 VVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |||+|++|+++|++|++ |.+|+|+||.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            89999999999999999 999999999976

...

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.22  E-value=3.6e-06  Score=83.27  Aligned_cols=32  Identities=38%  Similarity=0.604  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |||+|||+|++|+.+|..|++ |.+|+|+|+++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC
Confidence            799999999999999999999 99999999986

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.21  E-value=9.1e-06  Score=83.48  Aligned_cols=33  Identities=36%  Similarity=0.657  Sum_probs=31.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~   81 (539)
                      ||+|||+|++|+++|..|++ | .+|+|+||.+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            89999999999999999999 9 999999998753

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.20  E-value=7.7e-06  Score=77.98  Aligned_cols=36  Identities=36%  Similarity=0.479  Sum_probs=32.5

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ...+||.||||+|.+|+++|.++|. |.+|.+|+--.
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~   52 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVK   52 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecc
Confidence            3558999999999999999999999 99999998643

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.20  E-value=7.4e-06  Score=84.32  Aligned_cols=32  Identities=41%  Similarity=0.609  Sum_probs=30.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ||||||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            89999999999999999999 999999999864

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.20  E-value=1.1e-05  Score=77.16  Aligned_cols=36  Identities=33%  Similarity=0.536  Sum_probs=31.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-----CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~~~   81 (539)
                      ..+||+|||+|..|+++|+-|.+     |.+|+|+||..-.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            46899999999999999998866     6899999998753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.18  E-value=6.5e-06  Score=87.79  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=30.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER   77 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk   77 (539)
                      ...|||+|||||++|+++|.+|++ |.+|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            446999999999999999999999 999999974

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.18  E-value=1.3e-06  Score=92.22  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=32.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ...|||||||+|++|+++|.+|++ |.+|+|+|++.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~   39 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT   39 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence            557999999999999999999999 99999999974

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.17  E-value=5.8e-06  Score=79.17  Aligned_cols=35  Identities=40%  Similarity=0.569  Sum_probs=32.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..+||++|||+|.+|..+|.++++ |.+|.|+|..-
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f   53 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPF   53 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCC
Confidence            458999999999999999999999 99999999873

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.17  E-value=1.6e-05  Score=83.71  Aligned_cols=31  Identities=35%  Similarity=0.595  Sum_probs=29.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |+||||+|++|+.+|..|++ |.+|+|+||+.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            79999999999999999999 99999999975

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.16  E-value=1.3e-06  Score=92.03  Aligned_cols=33  Identities=33%  Similarity=0.519  Sum_probs=30.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||+|||+|++|+.+|.+|++ |.+|+|+|+.+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~   36 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS   36 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            5999999999999999999999 99999999743

>PLN02546 glutathione reductase

Probab=98.15  E-value=1.2e-06  Score=93.44  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER   77 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk   77 (539)
                      ..+|||||||+|++|..+|.+|++ |.+|+|+|+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~  110 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL  110 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            346999999999999999999999 999999996

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.14  E-value=3.1e-05  Score=83.46  Aligned_cols=36  Identities=33%  Similarity=0.548  Sum_probs=33.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +.++||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDT   57 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            467999999999999999999999 999999999864

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.14  E-value=1.9e-05  Score=80.77  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~   35 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSV   35 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCC
Confidence            799999999999999999999 999999999753

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.13  E-value=1.7e-06  Score=90.60  Aligned_cols=34  Identities=35%  Similarity=0.569  Sum_probs=32.1

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||||||||++|+.+|.+|++ |.+|+|+|+++.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~   37 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNA   37 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCC
Confidence            6999999999999999999999 999999999753

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.13  E-value=5.1e-05  Score=79.82  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=31.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      +|+|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G   35 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG   35 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            48999999999999999999 99999999987643

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02053 MerA mercuric reductase

Probab=98.13  E-value=1.6e-06  Score=91.37  Aligned_cols=32  Identities=41%  Similarity=0.702  Sum_probs=30.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |||||||+|++|+++|.+|++ |.+|+|+||++
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            799999999999999999999 99999999975

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.12  E-value=1.1e-05  Score=82.53  Aligned_cols=32  Identities=41%  Similarity=0.661  Sum_probs=30.0

Q ss_pred             cEEEECCCcchHHHHHhh--hc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASL--SQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~L--a~-G~~VlvlEkG~~   80 (539)
                      ||||||+|+||+++|++|  ++ |.+|+|||+.+.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~   35 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK   35 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence            899999999999999999  77 999999999865

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.11  E-value=1.6e-06  Score=93.77  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .+|||||||+|++|..+|.+|++ |++|+|+|++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            37999999999999999999999 9999999975

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.09  E-value=1e-05  Score=82.33  Aligned_cols=34  Identities=44%  Similarity=0.586  Sum_probs=30.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||||||+|=||+-||..+|+ |.+++||--..
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~   37 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNL   37 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccCCeEEEEEcCC
Confidence            45999999999999999999999 99999986654

>PRK13748 putative mercuric reductase; Provisional

Probab=98.09  E-value=2.2e-06  Score=92.72  Aligned_cols=34  Identities=35%  Similarity=0.427  Sum_probs=32.0

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            46999999999999999999999 99999999973

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.08  E-value=3e-05  Score=82.85  Aligned_cols=65  Identities=18%  Similarity=0.209  Sum_probs=50.1

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      +...+.+.|++|+++++|+.|..+++     ++.+|++.+. +|+...+.     ++.||+|||.+ +..++...|+
T Consensus       134 l~~~A~~~Ga~i~~~t~V~~i~~~~~-----~v~gv~v~~~~~g~~~~i~-----a~~VVnAaG~w-a~~l~~~~g~  199 (516)
T TIGR03377       134 NVLDAQEHGARIFTYTKVTGLIREGG-----RVTGVKVEDHKTGEEERIE-----AQVVINAAGIW-AGRIAEYAGL  199 (516)
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCEEEECCCcc-hHHHHHhcCC
Confidence            44567788999999999999998766     8999988753 45444454     89999999974 6777766665

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07236 hypothetical protein; Provisional

Probab=98.07  E-value=8.3e-05  Score=76.50  Aligned_cols=34  Identities=29%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5899999999999999999999 999999999863

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.07  E-value=2.7e-06  Score=89.58  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=30.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc--CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG   78 (539)
                      .+|||||||+|++|..+|.+|++  |.+|+|+|++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            46999999999999999999999  6999999985

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.06  E-value=1.7e-05  Score=81.61  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=32.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4799999999999999999999 999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.06  E-value=2.6e-06  Score=89.94  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=31.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ..+||+||||+|++|+++|.+|++ |.+|+|||++
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~   36 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAW   36 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            347999999999999999999999 9999999983

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.05  E-value=3.3e-06  Score=88.12  Aligned_cols=36  Identities=33%  Similarity=0.440  Sum_probs=33.0

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ...+|||||||+|++|+++|+.|++ |.+|+||||..
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3457999999999999999999999 99999999974

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.05  E-value=2.8e-06  Score=89.62  Aligned_cols=32  Identities=41%  Similarity=0.625  Sum_probs=30.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      +|||||||||++|+.+|.+|++ |.+|+|||+.
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            4999999999999999999999 9999999993

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.03  E-value=3.8e-06  Score=88.56  Aligned_cols=33  Identities=42%  Similarity=0.659  Sum_probs=31.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .+|||||||+|++|+.+|.+|++ |.+|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            35999999999999999999999 9999999994

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.01  E-value=3.8e-06  Score=89.09  Aligned_cols=33  Identities=33%  Similarity=0.550  Sum_probs=31.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ..|||||||+|++|+.+|.+|++ |.+|+|||++
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence            36999999999999999999999 9999999985

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.01  E-value=4.8e-06  Score=79.16  Aligned_cols=35  Identities=29%  Similarity=0.653  Sum_probs=32.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .||+||||||.+|+++|..|++ |.+||||||-+..
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HI   36 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI   36 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccC
Confidence            3899999999999999999999 9999999998763

>PLN02487 zeta-carotene desaturase

Probab=97.97  E-value=0.00018  Score=76.78  Aligned_cols=65  Identities=15%  Similarity=0.286  Sum_probs=44.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      +.+.+++.|.+|++++.|.+|..+.++.+..+++||.+.+ ++....+     .++.||+|++.....+||
T Consensus       301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~-~~~~~~~-----~aD~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSK-ATEKEIV-----KADAYVAACDVPGIKRLL  365 (569)
T ss_pred             HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEec-CCCceEE-----ECCEEEECCCHHHHHHhC
Confidence            4456678999999999999999985321112589998852 2332223     379999999977555554

>PRK06753 hypothetical protein; Provisional

Probab=97.96  E-value=9.3e-05  Score=75.74  Aligned_cols=32  Identities=31%  Similarity=0.509  Sum_probs=30.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ||+|||||++|+++|..|++ |.+|+|+||.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            79999999999999999999 999999999875

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.94  E-value=6.7e-05  Score=85.98  Aligned_cols=65  Identities=22%  Similarity=0.110  Sum_probs=47.2

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      ++..+++.|+++++++.|+++.-+ +     ++.+|++...+|...++     .++.|+++.|..-+..|+...|.
T Consensus       357 l~~~L~~~GV~i~~~~~v~~i~g~-~-----~v~~V~l~~~~g~~~~i-----~~D~V~va~G~~Pnt~L~~~lg~  421 (985)
T TIGR01372       357 ARAEARELGIEVLTGHVVAATEGG-K-----RVSGVAVARNGGAGQRL-----EADALAVSGGWTPVVHLFSQRGG  421 (985)
T ss_pred             HHHHHHHcCCEEEcCCeEEEEecC-C-----cEEEEEEEecCCceEEE-----ECCEEEEcCCcCchhHHHHhcCC
Confidence            444556789999999999998633 2     67788876433444445     38999999998888888766553

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09897 hypothetical protein; Provisional

Probab=97.93  E-value=5.7e-05  Score=79.88  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=29.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      .+|+|||+|++|+++|.+|.+ +  .+|.|+|++..
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~   37 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE   37 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            479999999999999999987 4  58999999764

>PRK07538 hypothetical protein; Provisional

Probab=97.92  E-value=6.8e-05  Score=77.85  Aligned_cols=32  Identities=31%  Similarity=0.567  Sum_probs=30.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            79999999999999999999 999999999764

>PRK05868 hypothetical protein; Validated

Probab=97.92  E-value=0.00012  Score=74.83  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=30.6

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            79999999999999999999 999999999865

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.88  E-value=6.2e-05  Score=77.51  Aligned_cols=34  Identities=38%  Similarity=0.522  Sum_probs=31.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .-+|+|||+|++||++|..|.+ |..|+++||.+.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            4589999999999999999999 999999999976

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.88  E-value=0.00061  Score=71.41  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=32.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ..+||+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~  168 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKP  168 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            46899999999999999999999 9999999997643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.86  E-value=1.2e-05  Score=82.72  Aligned_cols=36  Identities=39%  Similarity=0.481  Sum_probs=33.2

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+.|||||||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            456999999999999999999999 999999999864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.86  E-value=9.4e-06  Score=85.69  Aligned_cols=32  Identities=44%  Similarity=0.661  Sum_probs=30.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      +||+||||+|++|..+|.+|++ |.+|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5999999999999999999999 9999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK14727 putative mercuric reductase; Provisional

Probab=97.85  E-value=1e-05  Score=85.52  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..||+||||+|++|+.+|.+|++ |.+|+|+|++..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~   50 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADV   50 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence            46999999999999999999999 999999999753

>PRK07846 mycothione reductase; Reviewed

Probab=97.84  E-value=1.2e-05  Score=84.26  Aligned_cols=32  Identities=28%  Similarity=0.622  Sum_probs=28.0

Q ss_pred             CccEEEECCCcchHHHHHhhhcCCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~   79 (539)
                      +||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~-~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF-ADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence            48999999999999988763 399999999965

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.84  E-value=1.6e-05  Score=83.08  Aligned_cols=34  Identities=47%  Similarity=0.715  Sum_probs=27.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-C---CeEEEEcCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N---ASVLLLERGDSPY   82 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G---~~VlvlEkG~~~~   82 (539)
                      ||||||+|++|.++|..|++ +   .+|+|||+...+.
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~   38 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPR   38 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS--
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCC
Confidence            79999999999999999999 6   8999999987653

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.82  E-value=1.4e-05  Score=80.78  Aligned_cols=34  Identities=41%  Similarity=0.745  Sum_probs=31.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      +||+|||+|++|+++|.+|++ |.+|+|||+.+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            799999999999999999999 9999999997653

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK09126 hypothetical protein; Provisional

Probab=97.81  E-value=1.3e-05  Score=82.64  Aligned_cols=34  Identities=38%  Similarity=0.530  Sum_probs=32.6

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||||||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            5999999999999999999999 999999999975

>TIGR03452 mycothione_red mycothione reductase

Probab=97.81  E-value=1.4e-05  Score=83.72  Aligned_cols=32  Identities=25%  Similarity=0.560  Sum_probs=27.3

Q ss_pred             CccEEEECCCcchHHHHHhhhcCCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~   79 (539)
                      +||+||||+|++|..+|.++ .|+||+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~-~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF-ADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH-CCCeEEEEeCCC
Confidence            59999999999998886543 299999999864

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.77  E-value=8.8e-05  Score=70.36  Aligned_cols=37  Identities=38%  Similarity=0.581  Sum_probs=32.7

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      ....||.||||+|..|++.|.+|.-   +++|+||||-..
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~   84 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS   84 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence            3557999999999999999999866   799999999764

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=1.8e-05  Score=77.64  Aligned_cols=35  Identities=43%  Similarity=0.715  Sum_probs=31.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCe-EEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~~   80 (539)
                      +.|||||||||++|++||..++. +++ ++|+|++..
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~   38 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEP   38 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCc
Confidence            46999999999999999999999 988 888888643

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.76  E-value=2.1e-05  Score=82.46  Aligned_cols=37  Identities=38%  Similarity=0.416  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .+..+|||||||.+|++||..|.+ |.+|+|||+-+..
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRV   50 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCc
Confidence            446899999999999999999999 9999999998764

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.75  E-value=6.2e-05  Score=75.49  Aligned_cols=34  Identities=44%  Similarity=0.514  Sum_probs=26.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~   80 (539)
                      .||+|+||.|++++++|..|.+ + .+++.|||.+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            5899999999999999999999 4 89999999764

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.73  E-value=2.2e-05  Score=80.63  Aligned_cols=33  Identities=36%  Similarity=0.684  Sum_probs=31.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||+|||+|++|+++|..|++ |.+|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            5899999999999999999999 99999999875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.72  E-value=0.0011  Score=75.90  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=32.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ..+|+|||||++|+++|..|++ |.+|+|+|+.+..
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~  465 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVV  465 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence            5799999999999999999999 9999999998754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.70  E-value=2.3e-05  Score=82.44  Aligned_cols=32  Identities=38%  Similarity=0.606  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||||+|++|+++|.+|++ |.+|+|+||++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~   34 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADL   34 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            69999999999999999999 999999999763

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.70  E-value=2.6e-05  Score=80.75  Aligned_cols=33  Identities=33%  Similarity=0.570  Sum_probs=31.3

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ..|||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            36899999999999999999999 9999999996

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.66  E-value=0.00048  Score=69.54  Aligned_cols=111  Identities=13%  Similarity=0.112  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEE
Q 009241          173 QSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLEYANPSGLTVLLHASVHKILFRNKGKARPVAH  251 (539)
Q Consensus       173 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~  251 (539)
                      ...+.+++++.|+....          ...+.+++......++.+ ++..+++.||+|+++++|+.|  +++     . .
T Consensus        56 ~~d~~~fF~~~Gi~~~~----------e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~-----~-~  117 (376)
T TIGR03862        56 AVALQDWARGLGIETFV----------GSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGG-----T-L  117 (376)
T ss_pred             HHHHHHHHHHCCCceEE----------CCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCC-----c-E
Confidence            35678888888885221          111244444444444444 555778899999999999999  332     2 3


Q ss_pred             EEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCc
Q 009241          252 GVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQP  311 (539)
Q Consensus       252 gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~  311 (539)
                      .|.+.  .+. ..+     .++.||||+|+...|.+-- +|-| ....+.+|+.+....|
T Consensus       118 ~v~~~--~~~-~~~-----~a~~vIlAtGG~s~p~~Gs-~g~g-y~la~~lGh~i~~~~P  167 (376)
T TIGR03862       118 RFETP--DGQ-STI-----EADAVVLALGGASWSQLGS-DGAW-QQVLDQRGVSVAPFAP  167 (376)
T ss_pred             EEEEC--CCc-eEE-----ecCEEEEcCCCccccccCC-CcHH-HHHHHHCCCcccCCcC
Confidence            44442  222 123     3899999999988886622 2322 2445567776655545

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.65  E-value=8.5e-05  Score=69.62  Aligned_cols=64  Identities=23%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      ++. +.++.||+++.+ .|+.+. ++..    |+.+|......+..+..     ....+|||+|- +|++||..-+|
T Consensus       153 i~sea~k~~~V~lv~G-kv~ev~-dEk~----r~n~v~~ae~~~ti~~~-----d~~~ivvsaGP-WTskllp~~rI  217 (380)
T KOG2852|consen  153 ILSEAEKRGGVKLVFG-KVKEVS-DEKH----RINSVPKAEAEDTIIKA-----DVHKIVVSAGP-WTSKLLPFTRI  217 (380)
T ss_pred             HHHHHHhhcCeEEEEe-eeEEee-cccc----cccccchhhhcCceEEe-----eeeEEEEecCC-Cchhhcccccc
Confidence            344 445567999887 567776 3332    88888665323333332     35799999997 78888887655

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.65  E-value=0.0013  Score=67.24  Aligned_cols=61  Identities=20%  Similarity=0.384  Sum_probs=47.0

Q ss_pred             hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      ...++..||.+.++|+|+.|+++.++ ....++.+++.. +|....+.+.  +.+.|++.-|.+-
T Consensus       214 ~~~L~~~GV~F~~~t~V~di~~~~~~-~~~~~~~i~~~~-~g~~~~i~l~--~~DlV~vT~GS~t  274 (500)
T PF06100_consen  214 IRYLKSQGVDFRFNTKVTDIDFDITG-DKKTATRIHIEQ-DGKEETIDLG--PDDLVFVTNGSMT  274 (500)
T ss_pred             HHHHHHCCCEEECCCEEEEEEEEccC-CCeeEEEEEEEc-CCCeeEEEeC--CCCEEEEECCccc
Confidence            34678899999999999999997653 224678888774 6777666655  7899999999753

>PTZ00367 squalene epoxidase; Provisional

Probab=97.63  E-value=4.1e-05  Score=81.82  Aligned_cols=35  Identities=46%  Similarity=0.620  Sum_probs=32.6

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..+|||||||+|++|+++|..|++ |.+|+|+||.+
T Consensus        31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            347999999999999999999999 99999999975

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.61  E-value=0.00072  Score=70.24  Aligned_cols=32  Identities=38%  Similarity=0.598  Sum_probs=29.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~   80 (539)
                      .|+|||+|++|+++|..|++ | .+|+|+||.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            48999999999999999999 7 59999999764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02268 probable polyamine oxidase

Probab=97.61  E-value=4.1e-05  Score=80.11  Aligned_cols=35  Identities=46%  Similarity=0.575  Sum_probs=32.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      +|||||+|.+|++||++|.+ |.+|+|||+.+...+
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence            79999999999999999999 999999999887543

>PLN02676 polyamine oxidase

Probab=97.61  E-value=7.8e-05  Score=78.71  Aligned_cols=37  Identities=30%  Similarity=0.443  Sum_probs=33.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSPY   82 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~~   82 (539)
                      ..+||||||+|.+|+++|++|++ |. +|+|||+.+...
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G   63 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG   63 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence            36899999999999999999999 97 699999987643

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=97.55  E-value=0.00021  Score=71.85  Aligned_cols=68  Identities=18%  Similarity=0.339  Sum_probs=45.7

Q ss_pred             eeecCCCcccchh---hhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCC
Q 009241          204 TIIDQNSQRHTAA---DLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAG  280 (539)
Q Consensus       204 ~~~~~~g~r~~~~---~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG  280 (539)
                      .+.+.+|.-.+..   .++..+.+.|++++.+++|+.|..+++     ++.+|...  +| .  +     .++.||+|+|
T Consensus       126 ~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~-----~~~~v~~~--~g-~--~-----~a~~vV~a~G  190 (337)
T TIGR02352       126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGE-----KVTAIVTP--SG-D--V-----QADQVVLAAG  190 (337)
T ss_pred             EEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCC-----EEEEEEcC--CC-E--E-----ECCEEEEcCC
Confidence            3333455444332   245567788999999999999998665     77777642  44 2  3     3799999999


Q ss_pred             CcccHHH
Q 009241          281 ALGSPQL  287 (539)
Q Consensus       281 ~~~sp~l  287 (539)
                      ++ ++.|
T Consensus       191 ~~-~~~l  196 (337)
T TIGR02352       191 AW-AGEL  196 (337)
T ss_pred             hh-hhhc
Confidence            74 4443

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.55  E-value=5.9e-05  Score=75.71  Aligned_cols=37  Identities=32%  Similarity=0.405  Sum_probs=33.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .+..||||||+|.+||++|++|.+ |++|+|||..+..
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~   42 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRV   42 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCc
Confidence            456899999999999999999999 9999999998763

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.0005  Score=68.89  Aligned_cols=34  Identities=50%  Similarity=0.816  Sum_probs=30.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      +..|||||||+|-||+-||..+|+ |.+.++|-..
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            568999999999999999999999 9999988654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.55  E-value=5e-05  Score=79.82  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=30.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPY   82 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~~   82 (539)
                      +|+|||||.+|++||++|++ |  .+|+|+|+.+...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG   38 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence            59999999999999999999 8  8999999987643

>PRK07233 hypothetical protein; Provisional

Probab=97.52  E-value=5.8e-05  Score=78.87  Aligned_cols=35  Identities=31%  Similarity=0.492  Sum_probs=32.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      +|+|||+|.+|+++|+.|++ |.+|+|||+.+...+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence            58999999999999999999 999999999987543

>PLN02576 protoporphyrinogen oxidase

Probab=97.50  E-value=8.4e-05  Score=79.18  Aligned_cols=38  Identities=32%  Similarity=0.380  Sum_probs=33.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPY   82 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~   82 (539)
                      ...+||+|||||.+|+++|++|++  |.+|+|||+.+...
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG   49 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG   49 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence            345799999999999999999998  69999999987643

>PRK06996 hypothetical protein; Provisional

Probab=97.49  E-value=9e-05  Score=76.56  Aligned_cols=36  Identities=25%  Similarity=0.524  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-C----CeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-N----ASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G----~~VlvlEkG~~   80 (539)
                      +++|||+|||+|++|+++|+.|++ |    .+|+|+|+.+.
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~   49 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP   49 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence            457999999999999999999999 7    47999999763

>PLN02568 polyamine oxidase

Probab=97.48  E-value=9.2e-05  Score=78.91  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-C-----CeEEEEcCCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-N-----ASVLLLERGDSPY   82 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G-----~~VlvlEkG~~~~   82 (539)
                      .+..||||||+|.+|+++|.+|++ |     .+|+|+|+.....
T Consensus         3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence            445899999999999999999998 7     8999999988653

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.45  E-value=0.002  Score=56.97  Aligned_cols=30  Identities=20%  Similarity=0.440  Sum_probs=25.5

Q ss_pred             EEECCCcchHHHHHhhhc-C-----CeEEEEcCCCC
Q 009241           51 IVIGGGTAGCPLAASLSQ-N-----ASVLLLERGDS   80 (539)
Q Consensus        51 iVVGsG~aG~~aA~~La~-G-----~~VlvlEkG~~   80 (539)
                      +|||+|++|++++.+|.+ .     .+|.|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            499999999999999877 3     48999999553

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.45  E-value=0.0024  Score=61.75  Aligned_cols=40  Identities=33%  Similarity=0.350  Sum_probs=34.4

Q ss_pred             CccEEEECCCcchHHHHHhhhcCCeEEEEcCCCCCCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPN   86 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~~~~~~~   86 (539)
                      .-++.|||+|.+|+++|+.|+.-.+|.|.|++....+..+
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~   47 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHAN   47 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcccceEEEeccccccCccc
Confidence            3469999999999999999999889999999987655444

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.44  E-value=9.2e-05  Score=77.44  Aligned_cols=32  Identities=44%  Similarity=0.816  Sum_probs=29.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-----CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~   79 (539)
                      |||||||+|++|+++|+.|++     |.+|+||||.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            799999999999999999996     88999999964

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK10262 thioredoxin reductase; Provisional

Probab=97.44  E-value=9.6e-05  Score=73.94  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=31.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ++.+||+|||+|++|+.+|..|++ |.+|+++|+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence            567999999999999999999999 9999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.43  E-value=0.0001  Score=76.05  Aligned_cols=33  Identities=45%  Similarity=0.639  Sum_probs=30.4

Q ss_pred             CCccEEEECCCcchHHHHHhhhc----CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ----NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~----G~~VlvlEkG   78 (539)
                      +.+||+|||+|++|+++|+.|++    |.+|+|+||-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            35899999999999999999976    8999999995

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.42  E-value=0.00011  Score=73.74  Aligned_cols=33  Identities=39%  Similarity=0.565  Sum_probs=31.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -+++|||||.+|++||+.||+ |.+|.|+||.+.
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps  158 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPS  158 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            469999999999999999999 999999999986

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.39  E-value=0.00012  Score=67.63  Aligned_cols=32  Identities=41%  Similarity=0.737  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ||||||+|+||+.+|.+|++ +.+|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            79999999999999999999 999999988764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.34  E-value=0.00017  Score=78.67  Aligned_cols=37  Identities=32%  Similarity=0.463  Sum_probs=33.8

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~   80 (539)
                      |.+++||+|||+|++|+++|..|++  |.+|+||||.+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            4568999999999999999999998  899999999764

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.32  E-value=0.0015  Score=67.15  Aligned_cols=50  Identities=18%  Similarity=0.198  Sum_probs=35.6

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      +...+.+ |++++++++|+.|..+++     +   +.+...+|..  +     .++.||+|+|++.
T Consensus       141 l~~~~~~-G~~i~~~~~V~~i~~~~~-----~---~~v~t~~g~~--~-----~a~~vV~a~G~~~  190 (381)
T TIGR03197       141 LLAHAGI-RLTLHFNTEITSLERDGE-----G---WQLLDANGEV--I-----AASVVVLANGAQA  190 (381)
T ss_pred             HHhccCC-CcEEEeCCEEEEEEEcCC-----e---EEEEeCCCCE--E-----EcCEEEEcCCccc
Confidence            4456667 999999999999987654     3   3333335642  2     3799999999753

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.00015  Score=74.19  Aligned_cols=34  Identities=29%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      -|+|+|+|.||+++|++||+ |++|.|+|+++...
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~G   36 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLG   36 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccC
Confidence            38999999999999999999 99999999998754

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.31  E-value=0.00016  Score=76.36  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=31.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-----CCeEEEEcCCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSPY   82 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~~~~   82 (539)
                      .||+|||+|.+|+++|++|++     |.+|+|+|+.+...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG   42 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence            589999999999999999987     57999999987643

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.28  E-value=0.00018  Score=73.36  Aligned_cols=32  Identities=34%  Similarity=0.658  Sum_probs=30.0

Q ss_pred             cEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      ||+|||+|++|+++|.+|++   |.+|+|||+++.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~   35 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT   35 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            89999999999999999987   899999999874

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.26  E-value=0.00018  Score=73.09  Aligned_cols=33  Identities=33%  Similarity=0.313  Sum_probs=31.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -||+|||||.+|+.+|+.||+ |.+|+|+|+.+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            489999999999999999999 999999998775

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.25  E-value=0.00026  Score=79.78  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ..++|+|||||+||++||+.|++ |.+|+|+|+.+..
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccccc
Confidence            35899999999999999999999 9999999998753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.24  E-value=0.0002  Score=75.66  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-C------CeEEEEcCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N------ASVLLLERGDSPY   82 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G------~~VlvlEkG~~~~   82 (539)
                      +|+|||+|.+|++||++|++ |      .+|+|||+.+...
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G   43 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG   43 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence            59999999999999999997 4      6899999987643

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.22  E-value=0.0023  Score=66.96  Aligned_cols=32  Identities=19%  Similarity=0.506  Sum_probs=29.0

Q ss_pred             cEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .|||||+|++|+.+|.+|.+   +.+|+|+|+.+.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            59999999999999999987   478999999874

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.20  E-value=0.00027  Score=67.68  Aligned_cols=34  Identities=35%  Similarity=0.628  Sum_probs=32.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||+|||+|.+|+++|++|++ |+++.||-+|..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs   36 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS   36 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh
Confidence            6999999999999999999999 999999999875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.20  E-value=0.0023  Score=67.16  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=29.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      .|||||+|++|+.+|..|++ +  .+|+|+|+.+.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            49999999999999999998 5  58999999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.16  E-value=0.0003  Score=75.99  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+..+|+|||||++|+++|..|++ |.+|+|+||.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456899999999999999999999 99999999975

>PRK12831 putative oxidoreductase; Provisional

Probab=97.15  E-value=0.00039  Score=73.08  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ....||+|||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~  174 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE  174 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            346899999999999999999999 999999998764

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.11  E-value=0.00034  Score=71.76  Aligned_cols=32  Identities=38%  Similarity=0.540  Sum_probs=29.9

Q ss_pred             EEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSP   81 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~   81 (539)
                      ++|||||.+|+++|++|.+ +  ..|.|+|+++..
T Consensus         3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            8999999999999999999 7  899999999764

>PLN02529 lysine-specific histone demethylase 1

Probab=97.01  E-value=0.00053  Score=75.06  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=33.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...||+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~  195 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP  195 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence            46899999999999999999999 9999999998754

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.99  E-value=0.00049  Score=71.14  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=30.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|+|||||++|+++|..|++ |.+|+|+||.+.
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            69999999999999999999 999999999764

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.98  E-value=0.00065  Score=74.81  Aligned_cols=38  Identities=32%  Similarity=0.386  Sum_probs=33.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      ....+|+|||+|.+|+++|+.|++ |.+|+|+|+.....
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~G  274 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCC
Confidence            345799999999999999999999 99999999987643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.97  E-value=0.00052  Score=70.20  Aligned_cols=33  Identities=39%  Similarity=0.463  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .||+|||+|.+|+.+|+.||+ |.+|+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            479999999999999999999 999999998764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.94  E-value=0.0008  Score=71.04  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...+|+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~  178 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRI  178 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            35799999999999999999999 9999999998753

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=96.89  E-value=0.00071  Score=67.17  Aligned_cols=34  Identities=26%  Similarity=0.497  Sum_probs=31.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +-+|||||||.+|+++|..|++ |.+|+|+|+...
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            4579999999999999999999 999999999543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.87  E-value=0.00089  Score=75.96  Aligned_cols=35  Identities=23%  Similarity=0.166  Sum_probs=32.3

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+|+|||||+||+++|..|++ |.+|+|+|+.+.
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~  340 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHD  340 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCC
Confidence            35789999999999999999999 999999999865

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.87  E-value=0.00071  Score=71.38  Aligned_cols=65  Identities=17%  Similarity=0.353  Sum_probs=43.8

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      +.+.+++.|.+|+++++|++|..++++++..++++|.+.+.++. ..+     .++.||+|+......+||
T Consensus       225 l~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~-~~~-----~aD~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       225 ILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK-KVI-----KADAYVAACDVPGIKRLL  289 (474)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc-eEE-----ECCEEEECCChHHHHhhC
Confidence            44455668999999999999998652100013788887532221 223     379999999987777765

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=96.86  E-value=0.001  Score=71.70  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...+|+|||+|.+|+++|++|++ |.+|+|+|+.+..
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~  128 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL  128 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            35799999999999999999999 9999999998653

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.82  E-value=0.00097  Score=68.46  Aligned_cols=40  Identities=38%  Similarity=0.482  Sum_probs=30.8

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      |+++|||||+|+|..-+.+|..|+. |+|||.|++++.+.+
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg   41 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGG   41 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCG
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCC
Confidence            5678999999999999999999999 999999999998654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.78  E-value=0.001  Score=73.12  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+|+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            35799999999999999999999 999999999865

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.75  E-value=0.0014  Score=50.63  Aligned_cols=32  Identities=44%  Similarity=0.683  Sum_probs=30.3

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ++|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus         2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            7999999999999999999 9999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.74  E-value=0.0014  Score=73.75  Aligned_cols=36  Identities=33%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...+|+|||||++|+++|+.|++ |.+|+|+|+.+..
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENA  574 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            34689999999999999999999 9999999998753

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.71  E-value=0.0014  Score=73.45  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=32.0

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...||+|||||+||+++|..|++ |.+|+|+|+.+.
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~  465 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE  465 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            45799999999999999999999 999999999654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.61  E-value=0.0018  Score=68.16  Aligned_cols=35  Identities=31%  Similarity=0.401  Sum_probs=32.4

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+|+|||+|++|+.+|..|++ |.+|+|+|+.+.
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~  174 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK  174 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            35799999999999999999999 999999999875

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.60  E-value=0.0023  Score=67.09  Aligned_cols=36  Identities=33%  Similarity=0.461  Sum_probs=32.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPY   82 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~~~   82 (539)
                      ...|+|||||+||+.+|..|++   |.+|.|+|+.+.+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            4679999999999999999974   89999999998653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.59  E-value=0.0021  Score=65.14  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=36.4

Q ss_pred             ccccccccCCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           34 SFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        34 ~~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .|+.+.+..  ....+|+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus         7 ~~~~~~~~~--~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~   53 (352)
T PRK12770          7 AFMCKEKPP--PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP   53 (352)
T ss_pred             hhhcccCCC--CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            455553322  234589999999999999999999 9999999998754

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=96.56  E-value=0.0018  Score=65.32  Aligned_cols=35  Identities=34%  Similarity=0.497  Sum_probs=30.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~   81 (539)
                      ..-|||||+|.||++||.+|-+ | .+|+|+|..+..
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI   57 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence            4569999999999999999998 5 699999998764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.52  E-value=0.021  Score=58.56  Aligned_cols=33  Identities=33%  Similarity=0.563  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~  175 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS  175 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            369999999999999999999 999999999764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.48  E-value=0.0025  Score=70.03  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...+|+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            34789999999999999999999 9999999998753

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=96.40  E-value=0.018  Score=60.67  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=30.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  204 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDR  204 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence            479999999999999999999 999999999763

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.39  E-value=0.0029  Score=66.64  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=32.3

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+|+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            35799999999999999999999 999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN03000 amine oxidase

Probab=96.39  E-value=0.0026  Score=70.37  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=33.6

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      ...||+|||+|.+|+.+|..|++ |.+|+|+|+.+...
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riG  220 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCC
Confidence            35899999999999999999999 99999999987644

>PLN02976 amine oxidase

Probab=96.38  E-value=0.0027  Score=72.92  Aligned_cols=36  Identities=33%  Similarity=0.393  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ..+||+|||+|++|+.+|+.|++ |.+|+|||+.+..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~v  728 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRI  728 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCC
Confidence            45899999999999999999999 9999999997654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.34  E-value=0.0018  Score=62.53  Aligned_cols=60  Identities=20%  Similarity=0.293  Sum_probs=48.0

Q ss_pred             cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241          222 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS  291 (539)
Q Consensus       222 ~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S  291 (539)
                      ..-.|++|++|+.-+.|.-|++     +|+|+.|++. .|+.+.+.+     ..|.+--|-+-++.+|.-+
T Consensus       400 ~sl~Nv~ii~na~Ttei~Gdg~-----kV~Gl~Y~dr~sge~~~l~L-----eGvFVqIGL~PNT~WLkg~  460 (520)
T COG3634         400 RSLPNVTIITNAQTTEVKGDGD-----KVTGLEYRDRVSGEEHHLEL-----EGVFVQIGLLPNTEWLKGA  460 (520)
T ss_pred             hcCCCcEEEecceeeEEecCCc-----eecceEEEeccCCceeEEEe-----eeeEEEEecccChhHhhch
Confidence            3457999999999999887766     9999999875 577777764     6788888888888887754

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.22  E-value=0.036  Score=57.17  Aligned_cols=32  Identities=34%  Similarity=0.557  Sum_probs=29.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       146 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  178 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQRRCKVTVIELAAT  178 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            69999999999999999999 999999999864

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.22  E-value=0.0044  Score=61.41  Aligned_cols=37  Identities=46%  Similarity=0.827  Sum_probs=32.0

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-----CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~~   80 (539)
                      .+..|||||||||+.|.+.|..|..     .+||+|+|.+..
T Consensus        33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            3457999999999999999999877     379999999954

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.20  E-value=0.033  Score=58.83  Aligned_cols=54  Identities=11%  Similarity=0.086  Sum_probs=35.8

Q ss_pred             CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHH
Q 009241          223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL  287 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~l  287 (539)
                      ++.|++|+++++|+++..+++     .+ .+.+.+.+|+...+     .++.||+|+|...+..+
T Consensus       224 ~~~gV~i~~~~~v~~i~~~~~-----~~-~v~~~~~~g~~~~i-----~~D~vi~a~G~~pn~~~  277 (466)
T PRK07818        224 KKLGVKILTGTKVESIDDNGS-----KV-TVTVSKKDGKAQEL-----EADKVLQAIGFAPRVEG  277 (466)
T ss_pred             HHCCCEEEECCEEEEEEEeCC-----eE-EEEEEecCCCeEEE-----EeCEEEECcCcccCCCC
Confidence            356999999999999975433     22 34443235644444     37999999997655543

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=96.19  E-value=0.0045  Score=61.66  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CC--eEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~~~   81 (539)
                      ..+|+|||+|.+|+++|+.|+. +.  .|+|.|+++..
T Consensus        11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen   11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            4689999999999999999999 54  56779999874

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.14  E-value=0.0044  Score=69.09  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=31.0

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ....|+|||+|+||+++|+.|++ |.+|+|+|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            34679999999999999999999 99999999864

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.14  E-value=0.0037  Score=70.00  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=29.5

Q ss_pred             cEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      +|+|||+|++|+++|+.|++   |.+|+|+||.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            59999999999999999998   589999999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.13  E-value=0.0047  Score=67.78  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...+|+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence            35789999999999999999999 9999999998753

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.04  E-value=0.0054  Score=64.92  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=31.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+|+|||+|++|+.+|..|++ |.+|+|+|+.+.
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~  177 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR  177 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            4699999999999999999999 999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.01  E-value=0.0051  Score=66.58  Aligned_cols=35  Identities=34%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .-+|+|||+|++|+++|..|++ |.+|+|+|+.+..
T Consensus       137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~  172 (564)
T PRK12771        137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKL  172 (564)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4579999999999999999999 9999999998653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.00  E-value=0.041  Score=58.23  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=28.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  217 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLGAEVTILEALPA  217 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence            68999999999999999988 999999998763

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.99  E-value=0.0059  Score=63.32  Aligned_cols=35  Identities=23%  Similarity=0.397  Sum_probs=30.9

Q ss_pred             ccEEEECCCcchHHHHHhhh-c-CCeEEEEcCCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLS-Q-NASVLLLERGDSPY   82 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La-~-G~~VlvlEkG~~~~   82 (539)
                      .-|+|||||++|+.+|.+|+ + |.+|.|+||.+.+.
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            45999999999999999865 5 99999999998754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.88  E-value=0.061  Score=56.88  Aligned_cols=33  Identities=27%  Similarity=0.537  Sum_probs=29.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~  214 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR  214 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            369999999999999999999 999999999864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=95.84  E-value=0.051  Score=61.30  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=41.7

Q ss_pred             CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      ++.|+++++++.|++|..++.+    .+..|...  +|+.  +     .++.||+|+|.--+..|+..+|+
T Consensus       198 ~~~GV~v~~~~~v~~I~~~~~~----~~~~v~~~--dG~~--i-----~~D~Vv~A~G~rPn~~L~~~~Gl  255 (847)
T PRK14989        198 ESMGVRVHTSKNTLEIVQEGVE----ARKTMRFA--DGSE--L-----EVDFIVFSTGIRPQDKLATQCGL  255 (847)
T ss_pred             HHCCCEEEcCCeEEEEEecCCC----ceEEEEEC--CCCE--E-----EcCEEEECCCcccCchHHhhcCc
Confidence            4578999999999999765432    44555553  5653  3     37999999998877777666765

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.79  E-value=0.092  Score=56.18  Aligned_cols=55  Identities=16%  Similarity=0.291  Sum_probs=41.1

Q ss_pred             CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241          225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLM  289 (539)
Q Consensus       225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl  289 (539)
                      .|+++++++.|+++..+++     ++.+|++.+. ++....+     .++.||+|.|..-++.+|-
T Consensus       401 ~gV~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~~~~~i-----~~D~vi~a~G~~Pn~~~l~  456 (515)
T TIGR03140       401 PNVDILTSAQTTEIVGDGD-----KVTGIRYQDRNSGEEKQL-----DLDGVFVQIGLVPNTEWLK  456 (515)
T ss_pred             CCCEEEECCeeEEEEcCCC-----EEEEEEEEECCCCcEEEE-----EcCEEEEEeCCcCCchHHh
Confidence            5899999999999976544     7888888653 3444444     3799999999877766654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.74  E-value=0.044  Score=61.59  Aligned_cols=31  Identities=13%  Similarity=0.293  Sum_probs=27.2

Q ss_pred             EEEECCCcchHHHHHhhhc----CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ----NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~----G~~VlvlEkG~~   80 (539)
                      |||||+|++|+.+|.+|.+    +.+|+|+|+.+.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~   35 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPH   35 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCC
Confidence            6899999999999998766    468999999875

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.64  E-value=0.097  Score=56.03  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=42.7

Q ss_pred             CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      .|+++++++.|+++..+++     ++.+|++.+. +|+..++     .++.|+++.|...++.++..
T Consensus       400 ~gI~i~~~~~v~~i~~~~g-----~v~~v~~~~~~~g~~~~i-----~~D~v~~~~G~~p~~~~l~~  456 (517)
T PRK15317        400 PNVTIITNAQTTEVTGDGD-----KVTGLTYKDRTTGEEHHL-----ELEGVFVQIGLVPNTEWLKG  456 (517)
T ss_pred             CCcEEEECcEEEEEEcCCC-----cEEEEEEEECCCCcEEEE-----EcCEEEEeECCccCchHHhh
Confidence            5899999999999986544     8889988753 4544445     37999999998777776543

>PRK12831 putative oxidoreductase; Provisional

Probab=95.57  E-value=0.066  Score=56.37  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=28.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|+|||+|..|+-+|..|+. |.+|.|+++..
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            69999999999999999999 99999998753

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.56  E-value=0.16  Score=52.05  Aligned_cols=33  Identities=27%  Similarity=0.485  Sum_probs=28.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc---C-CeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ---N-ASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~---G-~~VlvlEkG~~   80 (539)
                      ++|+|||+|++|..+|.+|.+   . .+|.|+|+-+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            689999999999999999987   2 34999999765

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.55  E-value=0.068  Score=60.14  Aligned_cols=32  Identities=28%  Similarity=0.425  Sum_probs=29.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~  174 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG  174 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc
Confidence            59999999999999999999 999999998763

>PRK13984 putative oxidoreductase; Provisional

Probab=95.49  E-value=0.013  Score=64.07  Aligned_cols=35  Identities=23%  Similarity=0.251  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+|+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~  317 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK  317 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            45789999999999999999999 999999999875

>PRK10262 thioredoxin reductase; Provisional

Probab=95.43  E-value=0.17  Score=50.53  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=39.8

Q ss_pred             CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCC--CCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDAT--DAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~--g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      ++.|+++++++.|+++..+++     ++.+|++.+..  +....+     .++.||++.|.-....++
T Consensus       196 ~~~gV~i~~~~~v~~v~~~~~-----~~~~v~~~~~~~~~~~~~i-----~~D~vv~a~G~~p~~~l~  253 (321)
T PRK10262        196 ENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESL-----DVAGLFVAIGHSPNTAIF  253 (321)
T ss_pred             cCCCeEEEeCCEEEEEEcCCc-----cEEEEEEEEcCCCCeEEEE-----ECCEEEEEeCCccChhHh
Confidence            457899999999999975543     67788876432  233334     489999999976666544

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.37  E-value=0.082  Score=55.44  Aligned_cols=33  Identities=18%  Similarity=0.364  Sum_probs=29.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~  183 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR  183 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            369999999999999999999 999999998753

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.23  E-value=0.11  Score=54.01  Aligned_cols=32  Identities=31%  Similarity=0.684  Sum_probs=30.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -++|||+|..|+-.|.-++. |.+|.|||+++.
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~  207 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDR  207 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            49999999999999999999 999999999975

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=95.22  E-value=0.13  Score=51.30  Aligned_cols=38  Identities=34%  Similarity=0.318  Sum_probs=34.0

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSP   81 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~   81 (539)
                      |.+.+|+|.||-|+.-+..|.-|.+  +.+++.|||-+..
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            4567999999999999999999999  5899999998853

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.22  E-value=0.018  Score=59.38  Aligned_cols=34  Identities=32%  Similarity=0.403  Sum_probs=30.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC--eEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~~~   81 (539)
                      .+|||||+|++|+.+|..|++ |.  +|+|+++.+..
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            479999999999999999999 64  89999998653

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=94.95  E-value=0.27  Score=48.25  Aligned_cols=32  Identities=31%  Similarity=0.466  Sum_probs=29.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -.|+|||+|..|+-+|..|++ +.+|.++++++
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            379999999999999999999 99999998864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.94  E-value=0.1  Score=54.74  Aligned_cols=31  Identities=26%  Similarity=0.511  Sum_probs=25.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .++|||+|..|+-.|..|++ |.+|.|+|+++
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~  191 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFGSKVTILEAAS  191 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            57888888888888888888 88888888765

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=94.88  E-value=0.017  Score=57.17  Aligned_cols=41  Identities=37%  Similarity=0.522  Sum_probs=36.5

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN   84 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~   84 (539)
                      |.++|||||+|.|..=|+.+..|+- |.+||.++|++...+.
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~   42 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGE   42 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcc
Confidence            4567999999999999999999999 9999999999986543

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=94.88  E-value=0.027  Score=54.10  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=32.0

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc--C-CeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ--N-ASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~--G-~~VlvlEkG~~~   81 (539)
                      .++|.|+|||||.+|+.+|.++..  | -+|.|||-....
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            457999999999999999999988  6 489999977654

>PRK14727 putative mercuric reductase; Provisional

Probab=94.87  E-value=0.11  Score=55.09  Aligned_cols=30  Identities=23%  Similarity=0.438  Sum_probs=25.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            58999999999999998888 8899888764

>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]

Probab=94.84  E-value=0.047  Score=56.27  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..||.+|||+|.+|+-+|..|+| |.+|.++-|-.
T Consensus        54 ~~~da~vvgaggAGlr~~~~lae~g~~~a~itkl~   88 (642)
T KOG2403|consen   54 HTYDAVVVGAGGAGLRAARGLAELGEKTAVITKLF   88 (642)
T ss_pred             eeceeEEEeccchhhhhhhhhhhcCceEEEEeccc
Confidence            35999999999999999999999 99999987754

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=94.75  E-value=0.032  Score=54.90  Aligned_cols=35  Identities=31%  Similarity=0.445  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPY   82 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~~~   82 (539)
                      .-|+|||||+||..+|.+|-+   +.+|-|.||-|.+.
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            369999999999999999665   68999999998754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=94.72  E-value=0.032  Score=58.13  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      ..+|||||+|.+|+.+|.+|.. +.+|+|||+.+...
T Consensus        10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~   46 (424)
T PTZ00318         10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML   46 (424)
T ss_pred             CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc
Confidence            4689999999999999999988 89999999987643

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.53  E-value=0.04  Score=57.29  Aligned_cols=33  Identities=36%  Similarity=0.437  Sum_probs=31.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|.|||||++|+.+|..|+. |.+|++.|+-+.
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~  157 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL  157 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence            679999999999999999999 999999999875

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.90  E-value=0.073  Score=52.85  Aligned_cols=40  Identities=35%  Similarity=0.409  Sum_probs=36.1

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      .+.+|||||||.|..=.++|...+. |.+||=|++.+++.+
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg   45 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGG   45 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCC
Confidence            3568999999999999999999999 999999999987654

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.80  E-value=0.059  Score=54.85  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             cEEEECCCcchHHHHHhhhc----CCeEEEEcCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ----NASVLLLERGDSPY   82 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~~~   82 (539)
                      .|||||+|+||+.+|.+|.+    +.+|+|+|+.+...
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~   38 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP   38 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc
Confidence            38999999999999999963    58999999987643

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=93.77  E-value=0.073  Score=51.46  Aligned_cols=32  Identities=31%  Similarity=0.394  Sum_probs=29.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -|.|||+|.+|.-||+.+|+ |.+|.|.|--+.
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~   37 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV   37 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence            48999999999999999999 999999997764

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=93.72  E-value=0.058  Score=55.24  Aligned_cols=62  Identities=15%  Similarity=0.199  Sum_probs=43.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      +...+++.|++++++++|+++..+++     . ..|..  .+|+.  +     .++.||+|+|.-.++.++..+|+.
T Consensus       189 l~~~l~~~gV~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~D~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        189 LQHRLTEMGVHLLLKSQLQGLEKTDS-----G-IRATL--DSGRS--I-----EVDAVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             HHHHHHhCCCEEEECCeEEEEEccCC-----E-EEEEE--cCCcE--E-----ECCEEEECcCCCcchHHHHHCCCC
Confidence            33456678999999999999976543     2 23443  35643  3     379999999987777777767654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=93.45  E-value=0.49  Score=47.60  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=27.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      .....|+|||||-+++-++..|.+ +  .+|.++=|++.
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~  226 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG  226 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence            345679999999999999999998 5  48999888764

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=93.34  E-value=0.063  Score=59.69  Aligned_cols=46  Identities=28%  Similarity=0.401  Sum_probs=37.2

Q ss_pred             ccccccccCCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           34 SFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        34 ~~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .||....+...+ -.-|.|||||++|+++|-.|-+ |..|+|-||...
T Consensus      1773 gwm~p~pp~~rt-g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1773 GWMKPCPPAFRT-GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred             cCCccCCccccc-CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence            466554433322 3679999999999999999999 999999999876

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=93.12  E-value=0.4  Score=50.46  Aligned_cols=32  Identities=31%  Similarity=0.440  Sum_probs=28.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~   79 (539)
                      -.|+|||+|..|+-+|..|++ |. +|.++++.+
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            369999999999999999998 87 899998753

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=92.81  E-value=0.28  Score=48.37  Aligned_cols=59  Identities=17%  Similarity=0.306  Sum_probs=38.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGAL  282 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~  282 (539)
                      ++..++.++|.+..++.|+.|.++... +...+..+.+. .+++.....    +.+.|++.-|.+
T Consensus       233 li~yL~~H~Vdf~~~~~Vedi~v~~t~-gkkvA~aih~~-~d~~~ieLt----~dDlVfvTNgsi  291 (587)
T COG4716         233 LITYLKSHGVDFTYDQKVEDIDVDDTP-GKKVAKAIHVL-GDAETIELT----PDDLVFVTNGSI  291 (587)
T ss_pred             HHHHHHHcCCceEeccEEeeeeeccCc-chhHHHHHHHh-cCcceeecC----CCceEEEeccee
Confidence            344678899999999999999998652 11122333322 245443333    678899988875

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=92.81  E-value=0.13  Score=50.55  Aligned_cols=38  Identities=32%  Similarity=0.456  Sum_probs=34.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN   84 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~   84 (539)
                      +|||||+|.|.-=++.+..|+- |.+||.|+|.+...+.
T Consensus         6 ~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~   44 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST   44 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcc
Confidence            6999999999999999999999 9999999999976543

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=92.57  E-value=0.094  Score=47.86  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=29.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ...|+|||||+++-++|+++++ .+|-+|.|-+-
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~   41 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM   41 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeee
Confidence            3469999999999999999999 99999999764

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=92.51  E-value=0.097  Score=54.01  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=32.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .-+++|||+|..|+.+|..|++ |.+|+++|+.+..
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~  171 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRL  171 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEccccc
Confidence            3589999999999999999999 9999999999864

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=92.34  E-value=0.13  Score=52.35  Aligned_cols=37  Identities=27%  Similarity=0.494  Sum_probs=32.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSPYGNP   85 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~~~~~   85 (539)
                      -+||||||.+|+.+|.+|.. -  .+|++||+.......+
T Consensus         5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~p   44 (405)
T COG1252           5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTP   44 (405)
T ss_pred             eEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccch
Confidence            49999999999999999999 5  8899999998754433

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=92.28  E-value=0.53  Score=52.91  Aligned_cols=31  Identities=26%  Similarity=0.407  Sum_probs=27.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCe-EEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~   79 (539)
                      .|+|||+|..|+-+|..|.+ |.+ |.|+++.+
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            59999999999999999999 886 99998763

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.62  E-value=0.16  Score=44.36  Aligned_cols=30  Identities=37%  Similarity=0.579  Sum_probs=28.3

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ++|||+|..|+..|.+|++ |.+|.++-|.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999 99999998876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=90.05  E-value=0.26  Score=46.33  Aligned_cols=32  Identities=34%  Similarity=0.666  Sum_probs=29.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|--|..+|..|++ |..|+++|+.+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            48999999999999999999 999999999864

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=89.96  E-value=0.25  Score=43.63  Aligned_cols=30  Identities=40%  Similarity=0.529  Sum_probs=27.9

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |.|||+|..|.++|..|++ |.+|.|..+.+
T Consensus         2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            7899999999999999999 99999998864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=89.88  E-value=0.24  Score=44.76  Aligned_cols=31  Identities=35%  Similarity=0.492  Sum_probs=26.6

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.|||+|..|...|..++. |.+|.+++..+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            7899999999999999999 999999999753

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=89.64  E-value=0.28  Score=51.35  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~  191 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAST  191 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            69999999999999999999 999999999875

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=89.59  E-value=0.26  Score=46.27  Aligned_cols=31  Identities=42%  Similarity=0.730  Sum_probs=27.5

Q ss_pred             EEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      +||||||.||-++|..|+.   ...||||-+.+.
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            7999999999999999998   578999977653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.38  E-value=0.33  Score=44.61  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=27.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|.++.-+|..|++ |.+|.++=|.+.
T Consensus       168 k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  168 KRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             SEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             CcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            569999999999999999999 999999988764

...

>PRK07846 mycothione reductase; Reviewed

Probab=89.22  E-value=0.32  Score=51.10  Aligned_cols=33  Identities=21%  Similarity=0.434  Sum_probs=30.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~  200 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR  200 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            379999999999999999999 999999999875

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=89.05  E-value=0.32  Score=51.35  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~  208 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ  208 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence            69999999999999999999 999999999875

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=88.96  E-value=0.35  Score=50.92  Aligned_cols=32  Identities=28%  Similarity=0.659  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  204 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ  204 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            69999999999999999999 999999999875

>TIGR02053 MerA mercuric reductase

Probab=88.95  E-value=0.33  Score=51.21  Aligned_cols=33  Identities=36%  Similarity=0.646  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  200 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDR  200 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            469999999999999999999 999999999875

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=88.81  E-value=0.33  Score=48.06  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=29.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|.|||+|+.|+..|.+|++ |.+|.++.|+.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence            49999999999999999999 99999999975

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=88.77  E-value=0.33  Score=50.93  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|||+++.
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~  200 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHER  200 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            69999999999999999999 999999999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=88.67  E-value=2.1  Score=43.91  Aligned_cols=56  Identities=14%  Similarity=0.181  Sum_probs=43.3

Q ss_pred             cCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHh
Q 009241          222 ANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML  290 (539)
Q Consensus       222 ~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~  290 (539)
                      .++.|++++.++.+..+..+..|    +++.|...  +|+.  +     .++.||+..|+--...++..
T Consensus       265 ~e~kgVk~~~~t~~s~l~~~~~G----ev~~V~l~--dg~~--l-----~adlvv~GiG~~p~t~~~~~  320 (478)
T KOG1336|consen  265 YENKGVKFYLGTVVSSLEGNSDG----EVSEVKLK--DGKT--L-----EADLVVVGIGIKPNTSFLEK  320 (478)
T ss_pred             HHhcCeEEEEecceeecccCCCC----cEEEEEec--cCCE--e-----ccCeEEEeeccccccccccc
Confidence            34678999999999999888765    88888877  4643  2     48999999998666666554

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=88.48  E-value=0.31  Score=50.38  Aligned_cols=26  Identities=31%  Similarity=0.253  Sum_probs=23.4

Q ss_pred             cchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           57 TAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        57 ~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      .+|++||++|++ |.+|+|+|+.+...
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~G   27 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVG   27 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSB
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence            379999999999 99999999998754

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06370 mercuric reductase; Validated

Probab=88.22  E-value=0.41  Score=50.52  Aligned_cols=33  Identities=30%  Similarity=0.587  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  205 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPR  205 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            369999999999999999999 999999999875

>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []

Probab=88.17  E-value=0.38  Score=28.02  Aligned_cols=16  Identities=19%  Similarity=0.027  Sum_probs=9.7

Q ss_pred             CCcchhhHHH-HHHHHH
Q 009241            1 MDLRCLRLSF-VATLAT   16 (539)
Q Consensus         1 ~~~~~~~~~~-~~~~~~   16 (539)
                      |+||.|+.+. ++++++
T Consensus         2 ~sRR~fLk~~~a~~a~~   18 (26)
T PF10518_consen    2 LSRRQFLKGGAAAAAAA   18 (26)
T ss_pred             CcHHHHHHHHHHHHHHH
Confidence            6899985544 444434

Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.07  E-value=0.42  Score=50.65  Aligned_cols=31  Identities=32%  Similarity=0.516  Sum_probs=28.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|+|||+|.+|+.+|..|++ |.+|.++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            59999999999999999999 99999999765

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=87.99  E-value=0.5  Score=42.90  Aligned_cols=31  Identities=35%  Similarity=0.528  Sum_probs=25.2

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.|||.|..|+.+|..||+ |.+|+.+|..+.
T Consensus         3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             EEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            7899999999999999999 999999998753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=87.93  E-value=0.45  Score=50.23  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~  208 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR  208 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            369999999999999999999 999999999875

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=87.63  E-value=0.54  Score=53.24  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=29.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-----CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-----G~~VlvlEkG~~~   81 (539)
                      .|||||+|++|+.+|.+|.+     +.+|+|+++.+..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            69999999999999999864     4689999998864

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=87.57  E-value=0.47  Score=49.99  Aligned_cols=32  Identities=31%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~  206 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLGAEVTIVEALPR  206 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence            69999999999999999999 999999999875

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.46  E-value=0.49  Score=49.82  Aligned_cols=31  Identities=35%  Similarity=0.404  Sum_probs=29.0

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |+|||.|.+|+++|..|++ |.+|.+.|+...
T Consensus         3 v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            8999999999999999999 999999998764

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=87.41  E-value=0.48  Score=49.39  Aligned_cols=32  Identities=31%  Similarity=0.657  Sum_probs=30.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       139 ~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  171 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRERGKNVTLIHRSER  171 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcc
Confidence            69999999999999999999 999999999875

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=87.33  E-value=0.48  Score=49.54  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~  182 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERGLHPTLIHRSDK  182 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            69999999999999999999 999999999875

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=87.04  E-value=0.52  Score=49.70  Aligned_cols=32  Identities=28%  Similarity=0.581  Sum_probs=30.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~  209 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAALGVKVTLINTRDR  209 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            59999999999999999999 999999999875

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=86.94  E-value=0.55  Score=46.68  Aligned_cols=31  Identities=32%  Similarity=0.383  Sum_probs=29.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|.|||+|..|+..|..|++ |.+|.++.|++
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            49999999999999999999 99999998875

>TIGR03452 mycothione_red mycothione reductase

Probab=86.90  E-value=0.53  Score=49.45  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  203 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTK  203 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence            369999999999999999999 999999999875

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=86.88  E-value=0.53  Score=49.59  Aligned_cols=32  Identities=44%  Similarity=0.726  Sum_probs=30.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~  203 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGDR  203 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            69999999999999999999 999999999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=86.46  E-value=0.56  Score=38.73  Aligned_cols=31  Identities=26%  Similarity=0.531  Sum_probs=27.7

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |||||.|..|..+|..|.+ +.+|+++|+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            7999999999999999999 779999999863

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=86.36  E-value=0.48  Score=38.38  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=27.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      --|+|||+|..|..-+..|.+ |.+|.|+...
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            469999999999999999999 9999999765

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=85.90  E-value=0.64  Score=48.74  Aligned_cols=32  Identities=25%  Similarity=0.476  Sum_probs=30.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..+++ |.+|.|+|+++.
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~  200 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL  200 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence            59999999999999999999 999999999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=85.79  E-value=0.56  Score=47.84  Aligned_cols=34  Identities=32%  Similarity=0.683  Sum_probs=29.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc--C------------CeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ--N------------ASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~--G------------~~VlvlEkG~~   80 (539)
                      .-+++|||||+.|.=.|-+|++  .            .+|.|+|+++.
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~  202 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR  202 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCch
Confidence            3579999999999999998877  2            28999999986

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=85.64  E-value=0.71  Score=50.63  Aligned_cols=32  Identities=16%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-.|..|++ |.+|.|||+++.
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~  346 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQ  346 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCc
Confidence            69999999999999999999 999999999875

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=85.63  E-value=0.62  Score=46.17  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=29.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|.|||+|..|...|..|++ |.+|.++++.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            48999999999999999999 99999999875

>PRK04148 hypothetical protein; Provisional

Probab=85.38  E-value=0.75  Score=39.05  Aligned_cols=31  Identities=16%  Similarity=0.296  Sum_probs=27.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -+++||.| .|..+|..|++ |.+|+.+|..+.
T Consensus        19 kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         19 KIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             EEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            49999999 88888999999 999999998764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.23  E-value=0.75  Score=48.29  Aligned_cols=32  Identities=31%  Similarity=0.543  Sum_probs=29.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -.|+|||+|..|+.+|..|++ |.+|.+.|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            358999999999999999999 99999999864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=85.22  E-value=0.71  Score=49.89  Aligned_cols=32  Identities=34%  Similarity=0.478  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            69999999999999999999 999999999874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=85.18  E-value=0.75  Score=45.37  Aligned_cols=29  Identities=31%  Similarity=0.526  Sum_probs=27.5

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      +.|||+|..|...|..|++ |.+|.++.+.
T Consensus         3 I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            8999999999999999999 9999999984

>PTZ00058 glutathione reductase; Provisional

Probab=85.14  E-value=0.7  Score=49.75  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~  271 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNR  271 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccc
Confidence            369999999999999999999 999999999875

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=85.12  E-value=0.72  Score=45.54  Aligned_cols=28  Identities=29%  Similarity=0.497  Sum_probs=27.1

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLER   77 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEk   77 (539)
                      |.|||+|..|+..|..|++ |.+|.++.+
T Consensus         3 I~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          3 IAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            8999999999999999999 999999998

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=85.09  E-value=0.86  Score=42.03  Aligned_cols=30  Identities=20%  Similarity=0.450  Sum_probs=27.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      -++|||+|-.|...|..|.+ |.+|+|+++.
T Consensus        12 ~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         12 RVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            59999999999999999999 9999999753

>PLN02507 glutathione reductase

Probab=84.85  E-value=0.73  Score=49.04  Aligned_cols=32  Identities=28%  Similarity=0.373  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~  237 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL  237 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence            69999999999999999999 999999999875

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=84.84  E-value=0.83  Score=48.22  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~  211 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR  211 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            69999999999999999999 999999999875

>PRK06116 glutathione reductase; Validated

Probab=84.72  E-value=0.8  Score=48.11  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=30.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  201 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            369999999999999999999 999999999875

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=84.53  E-value=2.2  Score=45.12  Aligned_cols=34  Identities=24%  Similarity=0.256  Sum_probs=31.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      +|+|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G   35 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG   35 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence            48999999999999999999 99999999987643

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=84.11  E-value=1  Score=41.70  Aligned_cols=30  Identities=23%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      -|+|||+|..|..-|..|.+ |.+|.|+...
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~   41 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEE   41 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            59999999999999999999 9999999754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN02546 glutathione reductase

Probab=83.91  E-value=0.88  Score=49.02  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|..|+-.|..|++ |.+|.|+|+++.
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~  286 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK  286 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence            69999999999999999999 999999999875

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=83.91  E-value=0.91  Score=38.85  Aligned_cols=33  Identities=30%  Similarity=0.425  Sum_probs=28.6

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCe-EEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~   79 (539)
                      .--++|||+|.+|-.++..|++ |.+ |.|+-|..
T Consensus        12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            3469999999999999999999 875 99998753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=83.82  E-value=1  Score=43.46  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..-+|+|||+|..|.-+|.-+.. |.+|.+||....
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~  202 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID  202 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence            34689999999999999999999 999999999853

>PRK13748 putative mercuric reductase; Provisional

Probab=83.79  E-value=0.91  Score=49.20  Aligned_cols=31  Identities=26%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+..
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            69999999999999999999 99999999864

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=83.58  E-value=1.1  Score=39.45  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=26.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEc
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLE   76 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlE   76 (539)
                      -|+|||+|..|.--|..|.+ |.+|.|+.
T Consensus        15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            49999999999999999999 99999994

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=83.41  E-value=1.1  Score=43.02  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=25.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-C-------CeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-N-------ASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G-------~~VlvlEkG~   79 (539)
                      ..+++|||+|..|+++|+.+.+ .       .+|.|++--.
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf   43 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF   43 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence            3579999999999999977666 3       5777776544

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=82.97  E-value=1.2  Score=37.97  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=29.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~   80 (539)
                      .-|+|||.|..|+.+|..|+. |. ++.|++....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV   37 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence            359999999999999999999 96 8999998765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.96  E-value=1.1  Score=44.52  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |.|||+|..|...|..++. |.+|.+.+..+
T Consensus        10 VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066         10 FAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            8999999999999999999 99999999875

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.94  E-value=0.93  Score=44.43  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=28.8

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.|||+|..|...|..|++ |.+|+++++.+.
T Consensus         4 V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          4 LVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             EEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            8999999999999999999 999999998753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.69  E-value=1.1  Score=43.96  Aligned_cols=31  Identities=23%  Similarity=0.338  Sum_probs=28.6

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -|.|||+|..|...|..|++ |.+|.++++.+
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            38999999999999999999 99999999765

>PRK14694 putative mercuric reductase; Provisional

Probab=82.68  E-value=1.1  Score=47.27  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=28.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .++|||+|..|+-+|..|++ |.+|.|++++.
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLGSRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            69999999999999999999 99999999754

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.62  E-value=1.1  Score=43.94  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=29.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -|.|||+|..|...|..++. |.+|+++|+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            48999999999999999999 999999998864

>TIGR00518 alaDH alanine dehydrogenase

Probab=82.49  E-value=1.1  Score=45.60  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..+|+|||+|..|..+|..|.. |.+|.++++.+
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3569999999999999999999 99999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=82.44  E-value=1.2  Score=45.87  Aligned_cols=32  Identities=31%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|+|.|+.|..+|..|.. |.+|+++|..+.
T Consensus       204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            59999999999999999988 999999998753

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=82.41  E-value=1.1  Score=46.96  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=29.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|..|+-+|..|++ |.+|.|+++...
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            69999999999999999999 999999998753

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=82.18  E-value=1.2  Score=39.72  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=27.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .-|+|+|+|.+|..||.-|.. |.+|.++|..+
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            569999999999999999999 99999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=81.75  E-value=1.4  Score=40.50  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~   80 (539)
                      ..-|+|||+|..|+.+|..|+. |. ++.|++....
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~v   56 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVV   56 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            4569999999999999999999 97 7999988743

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=81.52  E-value=1.2  Score=45.05  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCe-EEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+ |.|+++...
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            59999999999999999988 886 999998653

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=81.49  E-value=1.2  Score=39.19  Aligned_cols=32  Identities=31%  Similarity=0.347  Sum_probs=26.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -++|+|-|..|-.+|.+|.. |.+|.|.|..|.
T Consensus        25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             EEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            49999999999999999999 999999999874

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.34  E-value=1.2  Score=43.67  Aligned_cols=33  Identities=36%  Similarity=0.442  Sum_probs=30.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -||.|||+|.+|.-+|+.||- =.-|.|||=.+.
T Consensus       355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             ceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            489999999999999999999 678999998765

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=80.83  E-value=1.6  Score=42.06  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~   80 (539)
                      ..-|+|||.|..|+.+|..|+. | .++.|+|....
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            4569999999999999999999 9 58999997654

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=80.71  E-value=1.2  Score=47.14  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=28.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            59999999999999999999 9999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=80.71  E-value=1.4  Score=44.34  Aligned_cols=31  Identities=35%  Similarity=0.640  Sum_probs=28.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|.|||+|..|...|..|++ |.+|.++++.+
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            38999999999999999999 99999999853

>PTZ00052 thioredoxin reductase; Provisional

Probab=80.62  E-value=1.3  Score=47.14  Aligned_cols=30  Identities=20%  Similarity=0.300  Sum_probs=28.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            69999999999999999999 9999999874

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=80.39  E-value=1.7  Score=40.08  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=28.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -++|+|.|..|..+|.+|.+ |.+|++.++.+
T Consensus        30 ~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          30 TVAVQGLGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            49999999999999999999 99999988653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=80.25  E-value=1.4  Score=43.23  Aligned_cols=31  Identities=19%  Similarity=0.376  Sum_probs=28.7

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.|||+|..|...|..|+. |.+|+++|+.+.
T Consensus         6 I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          6 IGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             EEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            8999999999999999999 999999998653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	539
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		1e-108
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		1e-108
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		1e-104
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		4e-19
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		4e-19
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		1e-18
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		6e-16
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		6e-12
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		1e-10
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		1e-08
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		3e-10
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		5e-08
1naa_A	541	Cellobiose Dehydrogenase Flavoprotein Fragment In C		2e-05
1kdg_A	546	Crystal Structure Of The Flavin Domain Of Cellobios		2e-05

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/530 (41%), Positives = 302/530 (56%), Gaps = 26/530 (4%)
Query: 21  HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
           HDF          SF  +AT  +    YDY+++GGGT+GCPLAA+LS+   VL+LERG  
Sbjct: 7   HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 59
Query: 81  PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
           P   PN+  +  F   L  +    +P +RF+SEDG+ + R RVLGG + INAG Y RA  
Sbjct: 60  PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119
Query: 140 --YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
             Y A    WD  LVN++Y+WVE  +V++P  Q WQS  +   +E GV P +GF+ DH  
Sbjct: 120 SIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEE 179
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
           GT+I G+  D    RH A +LL   N + L V +HASV KI+F N       A GV++RD
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGL--TATGVIYRD 237
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
           +    H A++R+  K E+IVSAG +G+PQLL+LSGVGP  +L + NI VVL  P VGQ +
Sbjct: 238 SNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 295
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGVNFAXXXXXXXXXXXX 371
            DNP N I +  P P+E +++ V+GI+       F S         F             
Sbjct: 296 HDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTF 355
Query: 372 FIF-EKIIGPVSTGHLELR-TRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXX 429
             F  K+ GP+S G L L+ + N   +P+V FNY+    DL  CV G             
Sbjct: 356 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 415
Query: 430 XXXXYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVD 489
                +++      N+   +P   LPK      + E FCR++V + WHYHGGC VGKV+D
Sbjct: 416 KPYKVEDLPGVEGFNILG-IP---LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 471
Query: 490 HDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 539
            D++V G++ALRVVDGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct: 472 GDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score =  389 bits (999), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/530 (41%), Positives = 302/530 (56%), Gaps = 26/530 (4%)
Query: 21  HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
           HDF          SF  +AT  +    YDY+++GGGT+GCPLAA+LS+   VL+LERG  
Sbjct: 7   HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 59
Query: 81  PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
           P   PN+  +  F   L  +    +P +RF+SEDG+ + R RVLGG + INAG Y RA  
Sbjct: 60  PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119
Query: 140 --YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
             Y A    WD  LVN++Y+WVE  +V++P  Q WQS  +   +E GV P +GF+ DH  
Sbjct: 120 SIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEE 179
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
           GT+I G+  D    RH A +LL   N + L V +HASV KI+F N       A GV++RD
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGL--TATGVIYRD 237
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
           +    H A++R+  K E+IVSAG +G+PQLL+LSGVGP  +L + NI VVL  P VGQ +
Sbjct: 238 SNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 295
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQ------FGSYIEGASGVNFAXXXXXXXXXXXX 371
            DNP N I +  P P+E +++ V+GI+       F S         F             
Sbjct: 296 HDNPRNFINILPPNPIEPTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTF 355
Query: 372 FIF-EKIIGPVSTGHLELR-TRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXX 429
             F  K+ GP+S G L L+ + N   +P+V FNY+    DL  CV G             
Sbjct: 356 AHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDAL 415
Query: 430 XXXXYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVD 489
                +++      N+   +P   LPK      + E FCR++V + WHYHGGC VGKV+D
Sbjct: 416 KPYKVEDLPGVEGFNILG-IP---LPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLD 471
Query: 490 HDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 539
            D++V G++ALRVVDGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct: 472 GDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/531 (40%), Positives = 296/531 (55%), Gaps = 29/531 (5%)
Query: 21  HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
           HDF          SF  +AT  +    YDY+++GGGT+GCPLAA+LS+   VL+LERG  
Sbjct: 7   HDFSYL-------SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGTL 59
Query: 81  PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
           P   PN+  S  F   L  +    +P +RF+S DG+   R RVLGG + INAG Y RA  
Sbjct: 60  PTAYPNLLTSDGFIYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYARANT 119
Query: 140 YYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
                +G  WD  LVN++Y WVE  +V++P  Q WQS  +   +E GVLP NGF+ DH  
Sbjct: 120 KIFSASGIEWDMDLVNQTYDWVEDTIVYKPDKQAWQSLTKTAFLEAGVLPDNGFSLDHEA 179
Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
           GT++ G+  D N  RH + +LL   +P+ L V +HASV KI+F +       A GV+++D
Sbjct: 180 GTRLTGSTFDNNGTRHASDELLNKGDPNNLRVAVHASVEKIIFSSNSSGV-TAIGVIYKD 238
Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
           +    H A++R   + E+IVSAG +GSPQLL+LSGVGP  +L + NI VVL  P VGQ +
Sbjct: 239 SNGTPHQAFVRG--EGEVIVSAGPIGSPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFL 296
Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFA--------XXXXXXXXXX 369
            DNP N I +  P P+E S + V+GIT    Y    S + F+                  
Sbjct: 297 HDNPRNFINILPPNPIEPSTVTVLGITS-NFYQCSFSSLPFSIPPFAFFPNPTYPLPNST 355
Query: 370 XXFIFEKIIGPVSTGHLELRT-RNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXX 428
                 K+ GP+S G + L +  +    P+V FNY+    DL  CV G            
Sbjct: 356 FAHFVNKVPGPLSYGSITLNSDSDVRVAPNVKFNYYSNSTDLAHCVSGMKKIGELLSSDA 415
Query: 429 XXXXXYDNMSVETLLNMTASMPLNL-LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV 487
                     VE L  +     L + LP++     + E FCR+ V + WHYHGGC VG+V
Sbjct: 416 LKP-----YKVEDLPGIDGFDILGIPLPENQTDDAAFETFCREAVASYWHYHGGCLVGEV 470
Query: 488 VDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
           +D D++V G++ALRVVDGSTF YSP ++PQ   +MLGRY+G +IL ER A+
Sbjct: 471 LDGDFRVTGINALRVVDGSTFPYSPASHPQGFYLMLGRYVGSKILQERSAA 521

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 118/284 (41%), Gaps = 35/284 (12%)
Query: 272 KNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 331
           +NE+++S GA+ +P+LLMLSG+GPA HL  H I V++D P VG+ + D+P   +   +  
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 332 PVEVSLIQVVGITQFGSYIEGAS---------GVNFAXXXXXXXXXXXXFIFE---KIIG 379
           P+     Q   I  F    +G            V F               F     +  
Sbjct: 322 PMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYDNM 437
             S G + LR+R+  D P V   YF +PE  D++  V G                    M
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPA--------M 433
Query: 438 SVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV------VDHD 491
           +  T   ++  +        + T   L+ + R T  T++H  G  ++G V      +D +
Sbjct: 434 AEWTGRELSPGV-------EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPE 486
Query: 492 YKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535
            +V GV  LRV D S        NP  TVMM+G      I S R
Sbjct: 487 LRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 118/284 (41%), Gaps = 35/284 (12%)
Query: 272 KNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 331
           +NE+++S GA+ +P+LLMLSG+GPA HL  H I V++D P VG+ + D+P   +   +  
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 332 PVEVSLIQVVGITQFGSYIEGAS---------GVNFAXXXXXXXXXXXXFIFE---KIIG 379
           P+     Q   I  F    +G            V F               F     +  
Sbjct: 322 PMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYDNM 437
             S G + LR+R+  D P V   YF +PE  D++  V G                    M
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPA--------M 433
Query: 438 SVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV------VDHD 491
           +  T   ++  +        + T   L+ + R T  T++H  G  ++G V      +D +
Sbjct: 434 AEWTGRELSPGV-------EAQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPE 486
Query: 492 YKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535
            +V GV  LRV D S        NP  TVMM+G      I S R
Sbjct: 487 LRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 117/284 (41%), Gaps = 35/284 (12%)
Query: 272 KNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV 331
           +NE+++S GA+ +P+LLMLSG+GPA HL  H I V++D P VG+ + D+P   +   +  
Sbjct: 262 RNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ 321
Query: 332 PVEVSLIQVVGITQFGSYIEGAS---------GVNFAXXXXXXXXXXXXFIFE---KIIG 379
           P+     Q   I  F    +G            V F               F     +  
Sbjct: 322 PMVAESTQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTH 381
Query: 380 PVSTGHLELRTRNPNDTPSVTFNYFKEPE--DLQRCVQGXXXXXXXXXXXXXXXXXYDNM 437
             S G + LR+R+  D P V   YF +PE  D++  V G                    M
Sbjct: 382 ARSRGTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPA--------M 433
Query: 438 SVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKV------VDHD 491
           +  T   ++  +        + T   L+ + R T  T +H  G  ++G V      +D +
Sbjct: 434 AEWTGRELSPGV-------EAQTDEELQDYIRKTHNTAYHPVGTVRMGAVEDEMSPLDPE 486
Query: 492 YKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER 535
            +V GV  LRV D S        NP  TVMM+G      I S R
Sbjct: 487 LRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSAR 530

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 202/499 (40%), Gaps = 59/499 (11%)
Query: 49  DYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSA---ELADLSPT 103
           D +++GGG+AG  LAA LS+  ++ VLL+E G+ P  +P+I N  ++ A      D    
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPALQGRSYDWDYR 77
Query: 104 SPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP--YYA-------REAGWDGRLVNE 154
           + +Q   +       R R++GG +C++A  Y R  P  + A       R  GWD  L   
Sbjct: 78  TEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELL--P 135
Query: 155 SYQWVEKKVVFRPPMQRWQ------------SALRDGLVEVGVLPYNGFTYDHLYGTKIG 202
            +Q +E   +    +                S L    +E G          H  G  IG
Sbjct: 136 VFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHNSGEMIG 195
Query: 203 GT---IIDQNSQRHTAADLLEYANPSG---LTVLLHASVHKILFRNKGKARPVAHGVVFR 256
            T   +  ++ +R TAAD        G   LT+L  + V ++      + R +   VV R
Sbjct: 196 VTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN-QVRSLE--VVGR 252
Query: 257 DATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG 316
             + AE  A       ++I++ AGAL SP LLM SG+GP D L A  +  ++D P +G+ 
Sbjct: 253 QGS-AEVFA-------DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRN 304
Query: 317 MSDNPMNA-IFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAXXXXXXXXXXXXFIFE 375
           + D+ + A     +  PV  S +Q    ++  +Y+   S                  + E
Sbjct: 305 LQDHLLGAGNLYAARKPVPPSRLQH---SESMAYMRADSFTAAGQPEIVVGCGVAPIVSE 361
Query: 376 KIIGPV--STGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXXX 433
               P   S   L     +P    SV  +    PE   R +                   
Sbjct: 362 SFPAPAAGSAYSLLFGITHPTSRGSVRIS---GPELGDRLIIDPAYLQTGRDRERFRRAL 418
Query: 434 YDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVD 489
             + ++     +       LLP   N++  ++ F   +V+T  H  G C++GK    VVD
Sbjct: 419 EASRTIGHRDELAGWRERELLPGTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVD 478
Query: 490 HDYKVLGVDALRVVDGSTF 508
            + ++  +D L VVD S  
Sbjct: 479 ANLRLKALDNLFVVDASIM 497

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 119/596 (19%), Positives = 215/596 (36%), Gaps = 135/596 (22%)
Query: 46  SYYDYIVIGGGTAGCPLAASLSQN--ASVLLLERG-DSPYGNPNITNSGS---FSAELAD 99
           S++D++++GGGTAG  +A  L++N   +VL++E G  +P   P IT   S         D
Sbjct: 5   SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 100 LSPTSPSQRFISEDGVV--STRARVLGGGTCIN--------AGFYTRAEPYYAREAGWDG 149
            +  +   R    + +   +TR + LGG + +N           + + E +  +E  WD 
Sbjct: 65  WAYKTTMVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDP 124
Query: 150 RL--VNESYQWVEKKVVFRPPMQR----------------WQSALRDGLVEVGVLPYNGF 191
            +  + +S  + +   ++ P +++                  +  R+ L +         
Sbjct: 125 LVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWK-SMGQP 183
Query: 192 TYDHLYGTKIGGTI--IDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPV 249
             +++Y  ++ G     D   +   +   L   N   +T++      +++     +A   
Sbjct: 184 LIENIYDGEMDGLTHCCDTIYRGQRSGSFLFVKNKPNITIVPEVHSKRLII---NEADRT 240
Query: 250 AHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLD 309
             GV    A   E    L      E+I+S G   +P+LLMLSG+GP   L  H I  ++D
Sbjct: 241 CKGVTVVTAAGNE----LNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 310 QPLVGQGMSDNP-------------MNAIFVP---------------SPVPVEVSLIQVV 341
              VGQ + D+P             M+ + +                   PV   L+++V
Sbjct: 297 SRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELV 356
Query: 342 GITQFGSYIEGAS-------------------------------GVNFAXXXXXXXXXXX 370
           G  +   Y+E  +                               G  F            
Sbjct: 357 GFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTPKTGDH 416
Query: 371 XFIFEKIIGPVST-GHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXX 429
             +   ++ P+S  G + L + +P   P++  N+F    D+    +G             
Sbjct: 417 LTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREG------------- 463
Query: 430 XXXXYDNM-SVETLLNMTAS-----MPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQ 483
               YD +   E   ++  S     MPL       ++   + +   D   T +H  G  +
Sbjct: 464 IRFSYDLLFKGEGFKDLVESEYPWEMPL-------DSDKEMHRAVLDRCQTAFHPTGTAR 516
Query: 484 VGK-----VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE 534
           + K     VVD   KV G+  LRV D S     P    Q +V  +G      I +E
Sbjct: 517 LSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE 572

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 135/320 (42%), Gaps = 58/320 (18%)
Query: 48  YDYIVIGGGTAGCPLAASLSQN--ASVLLLERG---------DSPYGNPNITNSGSFSAE 96
           +DY+V+G G AG  +AA L+++   SVL+LE G         ++P   P +  +  F   
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIF--- 59
Query: 97  LADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP----YYAREAGWDGRLV 152
             D + T+ +Q   +   +   R R+LGG + ++     R        YA   G +G   
Sbjct: 60  --DWNYTTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117
Query: 153 NESYQWVEKKVVFRPPMQR------------------------WQSALRDGLVEVGVLPY 188
           +   Q+V K  +  PP                           + + L D ++       
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQS 177
Query: 189 NGFTYDHLYGTK----IGGTIID-QNSQRHTAADLLEYANPS----GLTVLLHASVHKIL 239
             F ++   GT     I  +I    N QR +++    Y  P+     L+VL++A V K++
Sbjct: 178 EEFFFNPDMGTGHPLGISWSIASVGNGQRSSSS--TAYLRPAQSRPNLSVLINAQVTKLV 235
Query: 240 FRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHL 299
                   P    V + +   A          K E+++SAG++G+P LL LSG+G  + L
Sbjct: 236 NSGTTNGLPAFRCVEYAEQEGAPTTTVCA---KKEVVLSAGSVGTPILLQLSGIGDENDL 292
Query: 300 KAHNITVVLDQPLVGQGMSD 319
            +  I  +++ P VG+ +SD
Sbjct: 293 SSVGIDTIVNNPSVGRNLSD 312

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 20/159 (12%)
Query: 373 IFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGXXXXXXXXXXXXXXXX 432
           +   +I PV+ G ++L T NP D P +   Y     D+   +Q                 
Sbjct: 412 VTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRF--------- 462
Query: 433 XYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK------ 486
               +S +   +     P +   +      ++E + RD   TI+H  G   +        
Sbjct: 463 ----LSGQAWADFVI-RPFDPRLRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWG 517
Query: 487 VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGR 525
           VVD D KV GVD LR+VDGS   ++P  + Q  + ++G+
Sbjct: 518 VVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGK 556

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 133/327 (40%), Gaps = 62/327 (18%)
Query: 48  YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYGNPNITNSGSFSAE---LADLSP 102
           YDYI+ GGG  G  +AA L++N    VL++E+G         +N G+   +      +  
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE------SNDGAIIEDPNAYGQIFG 78
Query: 103 TSPSQRFISEDGVVSTR------ARVLGGGTCINAGFYTRAEPY----YAREAGWDGRLV 152
           T+  Q +++   +++ R       + LGG T IN   +TR +      + +  G +G   
Sbjct: 79  TTVDQNYLTVP-LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 153 NESYQWVEKKVVFRPPM-----------------------------QRWQ---SALRDGL 180
           +  +++++K    R P                              Q W     AL + +
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTV 197
Query: 181 VEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD--LLEYANPSGLTVLLHASVHKI 238
             +GV     F   H  G  +    +D+N  R  AA   LL     S L +L    V K+
Sbjct: 198 SALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKV 257
Query: 239 LFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADH 298
           LF+      P A GV F          +     K+E++++AG+  SP +L  SG+G    
Sbjct: 258 LFKQTASG-PQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSV 312
Query: 299 LKAHNITVVLDQPLVGQGMSDNPMNAI 325
           L   N+T +LD P VG  M D     +
Sbjct: 313 LDQANVTQLLDLP-VGINMQDQTTTTV 338

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 127/327 (38%), Gaps = 75/327 (22%)
Query: 49  DYIVIGGGTAGCPLAASLSQ--NASVLLLERGD------------SPYGNPNITNSGSFS 94
           DYI+ GGG  G   AA L++  N SVL++E G             + YG+    +S   +
Sbjct: 21  DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDI-FGSSVDHA 79
Query: 95  AELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNE 154
            E  +L+  + +    S +G        LGG T +N G +TR  P+ A+   W+    NE
Sbjct: 80  YETVELATNNQTALIRSGNG--------LGGSTLVNGGTWTR--PHKAQVDSWETVFGNE 129
Query: 155 SYQWVEKKVVFRPPMQRWQS---------------------------------------A 175
            + W +    +    +R ++                                       A
Sbjct: 130 GWNW-DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKA 188
Query: 176 LRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD---LLEYANPSGLTVLLH 232
           L   + + GV     F     +G  +    + ++  R  AA    L  Y  P+ L VL  
Sbjct: 189 LMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPN-LQVLTG 247
Query: 233 ASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSG 292
             V K+L    G   P A GV F       H  Y     K+E++++AG+  SP +L  SG
Sbjct: 248 QYVGKVLLSQNGTT-PRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSG 302
Query: 293 VGPADHLKAHNITVVLDQPLVGQGMSD 319
           +G    L+   I  V+D P VG  + D
Sbjct: 303 IGMKSILEPLGIDTVVDLP-VGLNLQD 328

>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam Length = 541

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 121/325 (37%), Gaps = 61/325 (18%)
Query: 48  YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG-------DSPYGNPNITNSGSFSAELAD 99
           YDYI++G G  G   A  LS+    VLLLERG          Y  P  T+SG    ++  
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62
Query: 100 L--SPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA-EPYYAREAGWDGRLVNESY 156
           L  S  + S  F     +      ++GGGT +N   Y    +  ++   GW     N + 
Sbjct: 63  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA- 121
Query: 157 QWVEKKVVFRP----PMQRWQSALRDGLVEVGVL----PYNGFTY-------DHLYGTKI 201
            +  K     P    P    Q  L      V  L     YN  T        DH++G   
Sbjct: 122 PYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFG--- 178
Query: 202 GGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHK--------ILFRNKGKARPVAHGV 253
                      ++A D L       +   L  ++ +        ++  N  +      GV
Sbjct: 179 -----------YSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGV 227
Query: 254 VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKA--HNITVVLDQP 311
              D T   +  ++   PK  +I+SAGA G+ ++L  SG+GP D ++    N T     P
Sbjct: 228 QTNDPTLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALP 286
Query: 312 --------LVGQGMSDNP-MNAIFV 327
                    VG    DNP +N +F 
Sbjct: 287 PQNQWINLPVGMNAQDNPSINLVFT 311

>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase Length = 546

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 121/325 (37%), Gaps = 61/325 (18%)
Query: 48  YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG-------DSPYGNPNITNSGSFSAELAD 99
           YDYI++G G  G   A  LS+    VLLLERG          Y  P  T+SG    ++  
Sbjct: 8   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67
Query: 100 L--SPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA-EPYYAREAGWDGRLVNESY 156
           L  S  + S  F     +      ++GGGT +N   Y    +  ++   GW     N + 
Sbjct: 68  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA- 126
Query: 157 QWVEKKVVFRP----PMQRWQSALRDGLVEVGVL----PYNGFTY-------DHLYGTKI 201
            +  K     P    P    Q  L      V  L     YN  T        DH++G   
Sbjct: 127 PYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFG--- 183
Query: 202 GGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHK--------ILFRNKGKARPVAHGV 253
                      ++A D L       +   L  ++ +        ++  N  +      GV
Sbjct: 184 -----------YSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGSQILGV 232
Query: 254 VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKA--HNITVVLDQP 311
              D T   +  ++   PK  +I+SAGA G+ ++L  SG+GP D ++    N T     P
Sbjct: 233 QTNDPTLGPN-GFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALP 291
Query: 312 --------LVGQGMSDNP-MNAIFV 327
                    VG    DNP +N +F 
Sbjct: 292 PQNQWINLPVGMNAQDNPSINLVFT 316

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	539
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	0.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-66
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	2e-64
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	3e-64
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	1e-62
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	2e-59
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	1e-58
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	2e-50
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	1e-30
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	1e-21
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	2e-12
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	1e-04
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	1e-06
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	6e-06
3atr_A	453	Conserved archaeal protein; saturating double bond	9e-06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	4e-05
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	4e-05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	5e-05
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	8e-05
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	1e-04
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	4e-04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	5e-04
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	5e-04

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  580 bits (1497), Expect = 0.0
 Identities = 217/526 (41%), Positives = 308/526 (58%), Gaps = 23/526 (4%)

Query: 27  QKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPN 86
                  SF  +AT  +    YDY+++GGGT+GCPLAA+LS+   VL+LERG  P   PN
Sbjct: 6   DHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPN 65

Query: 87  ITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP--YYAR 143
           +  +  F   L  +    +P +RF+SEDG+ + R RVLGG + INAG Y RA    Y A 
Sbjct: 66  VLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYSAS 125

Query: 144 EAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGG 203
              WD  LVN++Y+WVE  +V++P  Q WQS  +   +E GV P +GF+ DH  GT+I G
Sbjct: 126 GVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITG 185

Query: 204 TIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEH 263
           +  D    RH A +LL   N + L V +HASV KI+F N       A GV++RD+    H
Sbjct: 186 STFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLT--ATGVIYRDSNGTPH 243

Query: 264 IAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMN 323
            A++R   K E+IVSAG +G+PQLL+LSGVGP  +L + NI VVL  P VGQ + DNP N
Sbjct: 244 QAFVR--SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRN 301

Query: 324 AIFVPSPVPVEVSLIQVVGITQFGSYIEGASG--------VNFAGGSPSPRPY-RGGFIF 374
            I +  P P+E +++ V+GI+    + + +            F   S  P P        
Sbjct: 302 FINILPPNPIEPTIVTVLGIS--NDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFA 359

Query: 375 EKIIGPVSTGHLELRTR-NPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFK 433
            K+ GP+S G L L++  N   +P+V FNY+    DL  CV G+  I +++ + +   +K
Sbjct: 360 SKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYK 419

Query: 434 YDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYK 493
            +++      N+        LPK      + E FCR++V + WHYHGGC VGKV+D D++
Sbjct: 420 VEDLPGVEGFNILG----IPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFR 475

Query: 494 VLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLASN 539
           V G++ALRVVDGSTF Y+P ++PQ   +MLGRY+G++IL ER AS+
Sbjct: 476 VTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  224 bits (574), Expect = 2e-66
 Identities = 106/588 (18%), Positives = 176/588 (29%), Gaps = 151/588 (25%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELADLSPTSP 105
           YDYI+ GGG  G  +AA L++N    VL++E+G     +  I            +  T+ 
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIE---DPNAYGQIFGTTV 81

Query: 106 SQRFISE----DGVVS-TRARVLGGGTCINAGFYTRAE---------------------- 138
            Q +++     +   +    + LGG T IN   +TR +                      
Sbjct: 82  DQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMF 141

Query: 139 PYY---------AREAGWDGRLVNESY---------QWVEKKVVFRPPMQRWQSALRDGL 180
            Y                 G   N +             +    + P M+   + +    
Sbjct: 142 EYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTV---- 197

Query: 181 VEVGVLPYN---------GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANP----SGL 227
             +GV P           G +            + D+N  R  AA    +  P    S L
Sbjct: 198 SALGV-PVQQDFLCGHPRGVSMIMN-------NL-DENQVRVDAAR--AWLLPNYQRSNL 246

Query: 228 TVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL 287
            +L    V K+LF+        A GV F          + ++    E++++AG+  SP +
Sbjct: 247 EILTGQMVGKVLFKQTASGP-QAVGVNFGTNKAVNFDVFAKH----EVLLAAGSAISPLI 301

Query: 288 LMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAI--FVPSPVPVEVSLIQVVGITQ 345
           L  SG+G    L   N+T +LD P VG  M D     +     S    +   +     T+
Sbjct: 302 LEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQTTTTVSSRASSAGAGQGQAVFFANFTE 360

Query: 346 -FGSYIEGASGVNFAGGSPSPRPY--RGGFIFEKIIG----------------------- 379
            FG Y   A  +              RGGF     +                        
Sbjct: 361 TFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMD 420

Query: 380 -------------PVSTGHLELRTRNPNDTPSVT-FNYFKEPEDLQRCVQGISTIEKIIE 425
                        P + G + + + +P          +F    DL            +  
Sbjct: 421 TEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTS 480

Query: 426 SKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTS----LEQFCRDTVMTIWHYHGG 481
             +  ++     + E             LP ++    +       +        WH    
Sbjct: 481 QGAMKEY----FAGE------------TLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 524

Query: 482 CQVGK-----VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLG 524
           C +       VVD   KV G   LRV+DGS       ++       + 
Sbjct: 525 CSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMA 572

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  219 bits (559), Expect = 2e-64
 Identities = 109/581 (18%), Positives = 180/581 (30%), Gaps = 136/581 (23%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYG-NPNITNSGSFSAELADLSPTS 104
            DYI+ GGG  G   AA L++N   SVL++E G       P I +  ++      +  +S
Sbjct: 20  VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGD----IFGSS 75

Query: 105 PSQRFISE----DG--VVSTRARVLGGGTCINAGFYTRAEPY-Y---AREAG---WDGRL 151
               + +     +    +      LGG T +N G +TR             G   W+   
Sbjct: 76  VDHAYETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDN 135

Query: 152 V------NESYQWVEKKV-------------------VFRPPMQRWQSALRDGLVEVGV- 185
           V       E  +    K                              S +   L+     
Sbjct: 136 VAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVED 195

Query: 186 --LPYN---------GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANP----SGLTVL 230
             +P           G +           T+  ++  R  AA   E+  P      L VL
Sbjct: 196 RGVPTKKDFGCGDPHGVSMFPN-------TL-HEDQVRSDAAR--EWLLPNYQRPNLQVL 245

Query: 231 LHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLML 290
               V K+L        P A GV F       H  Y ++    E++++AG+  SP +L  
Sbjct: 246 TGQYVGKVLLSQ-NGTTPRAVGVEFGTHKGNTHNVYAKH----EVLLAAGSAVSPTILEY 300

Query: 291 SGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAI--FVPSPVPVEVSLIQVVGITQ-FG 347
           SG+G    L+   I  V+D P VG  + D     +   + S    +          + FG
Sbjct: 301 SGIGMKSILEPLGIDTVVDLP-VGLNLQDQTTATVRSRITSAGAGQGQAAWFATFNETFG 359

Query: 348 SYI-EGASGVNFAGGSPSPRPY-RGGFI-----------------------FEKIIG--- 379
            Y  +    +N      +     RGGF                         E  +    
Sbjct: 360 DYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLDTAG 419

Query: 380 ----------PVSTGHLELRTRNPN-DTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKS 428
                     P + G++ +  ++P     +    YF    DL            I  S +
Sbjct: 420 VASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGA 479

Query: 429 FSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK-- 486
              +     + ET+     +   +L         +  ++        +H  G C +    
Sbjct: 480 MQTYF----AGETIPGDNLAYDADLS--------AWTEYIPYHFRPNYHGVGTCSMMPKE 527

Query: 487 ---VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLG 524
              VVD+  +V GV  LRV+DGS       ++       + 
Sbjct: 528 MGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 568

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  217 bits (556), Expect = 3e-64
 Identities = 112/553 (20%), Positives = 190/553 (34%), Gaps = 133/553 (24%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELADLSPTSP 105
            D +++GGG+AG  LAA LS++    VLL+E G+ P  +P+I N  ++ A    L   S 
Sbjct: 18  CDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPT-DPDIWNPAAWPA----LQGRSY 72

Query: 106 SQRFISE-----DG--VVSTRARVLGGGTCINAGFYTRAEPY-Y---AREAG---WDGRL 151
              + +E      G      R R++GG +C++A  Y R  P  +      +G   W    
Sbjct: 73  DWDYRTEAQAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132

Query: 152 V------NESYQ-------------WVEKKVVFRPPMQRWQSALRDGLVEVGVLPYN--- 189
           +       E +               +        P+ R   A  +    +G LP     
Sbjct: 133 LLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLAR---AFIEAGASLG-LPRLEGH 188

Query: 190 ------GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANP-----SGLTVLLHASVHKI 238
                 G T + L        I  ++ +R TAAD   +          LT+L  + V ++
Sbjct: 189 NSGEMIGVTPNSL-------NI--RDGRRVTAAD--AWLTKAVRGRKNLTILTGSRVRRL 237

Query: 239 LFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADH 298
                         +            +       +I++ AGAL SP LLM SG+GP D 
Sbjct: 238 KLEGN-----QVRSLEVVGR-QGSAEVFAD-----QIVLCAGALESPALLMRSGIGPHDV 286

Query: 299 LKAHNITVVLDQPLVGQGMSD--------------NPMNA-------IFVPSPVPVEVSL 337
           L A  +  ++D P +G+ + D               P +         ++ +        
Sbjct: 287 LDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPVPPSRLQHSESMAYMRADSFTAAGQ 346

Query: 338 --IQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPND 395
             I V             +    +  S                 P S G + +      D
Sbjct: 347 PEIVVGCGVAPIVSESFPAPAAGSAYSLLFGITH----------PTSRGSVRISGPELGD 396

Query: 396 TPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP 455
              +   Y +   D +R  + +     I      + ++                   LLP
Sbjct: 397 RLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWR----------------ERELLP 440

Query: 456 KHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK----VVDHDYKVLGVDALRVVDGSTFYYS 511
              N++  ++ F   +V+T  H  G C++GK    VVD + ++  +D L VVD S     
Sbjct: 441 GTPNSAAEMDDFIARSVITHHHPCGTCRMGKDPDAVVDANLRLKALDNLFVVDASIMPNL 500

Query: 512 PGTNPQATVMMLG 524
                 A V+ + 
Sbjct: 501 TAGPIHAAVLAIA 513

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  213 bits (546), Expect = 1e-62
 Identities = 116/606 (19%), Positives = 203/606 (33%), Gaps = 182/606 (30%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDS---------PYGNPNITNSGSFS-- 94
           +DY+V+G G AG  +AA L+++   SVL+LE G S         P   P +  +  F   
Sbjct: 3   FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWN 62

Query: 95  ------AELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTR---------AE- 138
                 A     S   P             R R+LGG + ++     R         A  
Sbjct: 63  YTTTAQAGYNGRSIAYP-------------RGRMLGGSSSVHYMVMMRGSTEDFDRYAAV 109

Query: 139 ------------PYYAR----EAGWDGRLVNESYQ----------WVEKKVVFRPPMQRW 172
                        +  +        D    +  +            +            +
Sbjct: 110 TGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISL--------PGF 161

Query: 173 QSALRDGLVEVGV-----LPYN---------GFTYDHLYGTKIGGTIIDQNSQRHTAAD- 217
            + L D ++           +N         G ++          ++   N QR +++  
Sbjct: 162 PTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIA-------SV--GNGQRSSSSTA 212

Query: 218 -LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGP----- 271
            L    +   L+VL++A V K++        P    V           A     P     
Sbjct: 213 YLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCV---------EYAEQEGAPTTTVC 263

Query: 272 -KNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPM--NAIFVP 328
            K E+++SAG++G+P LL LSG+G  + L +  I  +++ P VG+ +SD+ +   A FV 
Sbjct: 264 AKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVN 323

Query: 329 SPVPVEVSLIQVVG-------------------ITQFGSYIEGASGVNFAGGSPSPRPYR 369
           S    +                           I    +++   S  +     P P    
Sbjct: 324 SNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGP 383

Query: 370 GGFIFEKIIGPV-------------------------STGHLELRTRNPNDTPSVTFNYF 404
               +E I                             + G ++L T NP D P +   Y 
Sbjct: 384 NSAHWETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYL 443

Query: 405 KEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSL 464
               D+   +Q + +  + +  ++++ F                 P +   +      ++
Sbjct: 444 STEFDIFTMIQAVKSNLRFLSGQAWADFV--------------IRPFDPRLRDPTDDAAI 489

Query: 465 EQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQA 518
           E + RD   TI+H  G   +        VVD D KV GVD LR+VDGS   ++P  + Q 
Sbjct: 490 ESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQG 549

Query: 519 TVMMLG 524
            + ++G
Sbjct: 550 PIYLVG 555

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  205 bits (523), Expect = 2e-59
 Identities = 124/552 (22%), Positives = 203/552 (36%), Gaps = 121/552 (21%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELADLS---- 101
           +DYIV+GGG+AG  +AA LS++   SV L+E G    G P +        EL +      
Sbjct: 14  FDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLD-RWMELLESGYDWD 72

Query: 102 -PTSPSQ---RFISEDGVVSTRARVLGGGTCINAGFYTRAEPY-Y---AREAG---WDGR 150
            P  P +    F+        RA+V+GG +  N+     A          + G   W+  
Sbjct: 73  YPIEPQENGNSFMRH-----ARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127

Query: 151 LV------NESYQWVEKKVVFRP---PM----QRWQSALRDGLVEVGV---LPYN----- 189
                    E+ +             P+       +      L++      +P       
Sbjct: 128 AAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFNTG 187

Query: 190 -----GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANP----SGLTVLLHASVHKILF 240
                G  +  +            +  R +++    Y +P       T+L      +++F
Sbjct: 188 TTVVNGANFFQI-------NR-RADGTRSSSSV--SYIHPIVEQENFTLLTGLRARQLVF 237

Query: 241 RNKGKARPVAHGV-VFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHL 299
               +      GV +   A    H    RN    E+++S GA+ +P+LLMLSG+GPA HL
Sbjct: 238 DADRRCT----GVDIVDSAFGHTHRLTARN----EVVLSTGAIDTPKLLMLSGIGPAAHL 289

Query: 300 KAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVN-- 357
             H I V++D P VG+ + D+P   +   +  P+     Q     + G +     G++  
Sbjct: 290 AEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQPMVAESTQWW---EIGIFTPTEDGLDRP 346

Query: 358 -----FAGGSPSPRPYRGGFIFEKIIG-----------PVSTGHLELRTRNPNDTPSVTF 401
                +      P                           S G + LR+R+  D P V  
Sbjct: 347 DLMMHYG---SVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDKPMVDP 403

Query: 402 NYFKEPE--DLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLP-KHS 458
            YF +PE  D++  V GI    +I    + +++                    L P   +
Sbjct: 404 RYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWT----------------GRELSPGVEA 447

Query: 459 NTSTSLEQFCRDTVMTIWHYHGGCQVGK------VVDHDYKVLGVDALRVVDGSTFYYSP 512
            T   L+ + R T  T++H  G  ++G        +D + +V GV  LRV D S      
Sbjct: 448 QTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHV 507

Query: 513 GTNPQATVMMLG 524
             NP  TVMM+G
Sbjct: 508 TVNPNITVMMIG 519

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  202 bits (517), Expect = 1e-58
 Identities = 98/577 (16%), Positives = 157/577 (27%), Gaps = 152/577 (26%)

Query: 48  YDYIVIGGGTAGCPLAASLSQN-ASVLLLERG--DSPYGNPNITNSGSFSAELADLSPTS 104
           YDYI++G G  G   A  LS+    VLLLERG   +           + S+ L       
Sbjct: 8   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67

Query: 105 PSQRFISE-----DG--VVSTRARVLGGGTCINAGFYTRAEPY-YAREAGWDG------- 149
             +   ++         +      ++GGGT +N   Y       ++   GW         
Sbjct: 68  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 127

Query: 150 ---RLVNESYQ------------WVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFT-- 192
              +L   S              ++E+       + +       G  +  +     +   
Sbjct: 128 YTSKL--SSRLPSTDHPSTDGQRYLEQS---FNVVSQLLKGQ--GYNQATINDNPNYKDH 180

Query: 193 ----YDHLYGTKIGGTIIDQNSQRHTAADLLEYANP----SGLTVLLHASVHKILFRNKG 244
                       + G       +R        Y          T   +  V  ++     
Sbjct: 181 VFGYSAF---DFLNG-------KRAGPVA--TYLQTALARPNFTFKTNVMVSNVVRNGS- 227

Query: 245 KARPVAHGVVFRDAT---DAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKA 301
                  GV   D T   +          PK  +I+SAGA G+ ++L  SG+GP D ++ 
Sbjct: 228 ----QILGVQTNDPTLGPNGFIPVT----PKGRVILSAGAFGTSRILFQSGIGPTDMIQT 279

Query: 302 HNITVVLDQPL----------VGQGMSDNP-MNAIF-VPSPVPVEVSLIQVVGITQFGSY 349
                     L          VG    DNP +N +F  PS    E +   V    +    
Sbjct: 280 VQSNPTAAAALPPQNQWINLPVGMNAQDNPSINLVFTHPSIDAYE-NWADVWSNPRPADA 338

Query: 350 IE--------GASGVNFAGG--------------------------SPSPRPYRGGFIF- 374
            +         A                                  S  P      F   
Sbjct: 339 AQYLANQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTIT 398

Query: 375 -EKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGI-STIEKIIESKSFSKF 432
                G  S G + +          +T  +   P D    +Q +   +  I      +  
Sbjct: 399 VYLSTGIQSRGRIGI--DAALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI 456

Query: 433 KYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK-----V 487
                                 P  + T            M   H+     +G      V
Sbjct: 457 T---------------------PDVTQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAV 495

Query: 488 VDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLG 524
           VD + KV G + L +VD     + P  NPQ T+M   
Sbjct: 496 VDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAA 532

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  181 bits (461), Expect = 2e-50
 Identities = 97/606 (16%), Positives = 177/606 (29%), Gaps = 179/606 (29%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDS----------PYGNPNITNSG---S 92
           +D++++GGGTAG  +A  L++N   +VL++E G            P    ++ NS    +
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66

Query: 93  FSAELADLSPTSPSQRFISEDG----VVSTRARVLGGGTCINAGFYTR---------AE- 138
           +         T+  +R    D       +TR + LGG + +N   +            E 
Sbjct: 67  YK--------TTMVRRD---DYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEF 115

Query: 139 -----------PYYAR----EAGWDGRLVNESYQ------WVEKKVVFRPPMQRWQSALR 177
                      PY  +                         +         +    +  R
Sbjct: 116 GGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPIS-----HAELIDEMAPFR 170

Query: 178 DGLVEVGV---LPYN---------GFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLEYANP 224
           + L +       P           G T+          TI     QR  +   +    N 
Sbjct: 171 ENLTKAWKSMGQPLIENIYDGEMDGLTHCCD-------TI--YRGQRSGSFLFVKNKPN- 220

Query: 225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS 284
             +T++      +++     +      GV    A   E   +       E+I+S G   +
Sbjct: 221 --ITIVPEVHSKRLIINEADR---TCKGVTVVTAAGNELNFFADR----EVILSQGVFET 271

Query: 285 PQLLMLSGVGPA----------------------DHL---------KAHNITVVLDQPLV 313
           P+LLMLSG+GP                       DH              +  VL +   
Sbjct: 272 PKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVPFVLRVKDGFGMDDVLLRHGP 331

Query: 314 GQG-------------MSDNPMNAI-FVPSPVPVEVSLIQVVGITQFGSYIEGASGV--- 356
            +              +    +  + F      +E            G     +      
Sbjct: 332 KRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPH 391

Query: 357 ---NFAGGSPSPRPYRGGFIFEK--------IIGPVS-TGHLELRTRNPNDTPSVTFNYF 404
              +F     +   +                ++ P+S  G + L + +P   P++  N+F
Sbjct: 392 FELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFF 451

Query: 405 KEPEDLQRCVQGISTIEKII-ESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTS 463
               D+    +GI     ++ + + F                             ++   
Sbjct: 452 ANDLDIIAMREGIRFSYDLLFKGEGFKDLVESEYP-----------W----EMPLDSDKE 496

Query: 464 LEQFCRDTVMTIWHYHGGCQVGK-----VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQA 518
           + +   D   T +H  G  ++ K     VVD   KV G+  LRV D S     P    Q 
Sbjct: 497 MHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLKVHGIKKLRVADASVIPIIPDCRIQN 556

Query: 519 TVMMLG 524
           +V  +G
Sbjct: 557 SVYAVG 562

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score =  124 bits (312), Expect = 1e-30
 Identities = 77/549 (14%), Positives = 145/549 (26%), Gaps = 99/549 (18%)

Query: 44  PVSYYDYIVIGGGTAGCPLAASLSQN-ASVLLLERG------------------------ 78
              Y   +VIG G      A  L +     L+LE G                        
Sbjct: 2   NGGYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSS 61

Query: 79  -DSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRA 137
                    + +         ++ P +     ++ D +     R +GGG+ +N G     
Sbjct: 62  WFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEP 121

Query: 138 EP--YYAREAGWDGRLVNES-YQWVEKKVVFRPPMQRWQS---------ALRDGLVEVGV 185
           +   +       D   + +  +      +       +W             R+   + G+
Sbjct: 122 KRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGL 181

Query: 186 ------LPYNGFTYDHLYGTKIGGTIIDQ-------NSQRHTAADLLEYANPSG-LTVLL 231
                   Y+          ++  + +         + ++      L  A  +G +T+  
Sbjct: 182 GTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQT 241

Query: 232 HASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS 291
              V  I     G     A  V  +D          +      + + AG+LGS +LL+ +
Sbjct: 242 LHQVKTIRQTKDGG---YALTVEQKDTDGKLLAT--KEISCRYLFLGAGSLGSTELLVRA 296

Query: 292 G-VGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYI 350
              G   +L             VG G   N        + +       Q           
Sbjct: 297 RDTGTLPNL----------NSEVGAGWGPNGNIMTARANHMWNPTGAHQSSIPALGIDAW 346

Query: 351 EGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDL 410
           + +    FA  +P P            I                D   + +   +    +
Sbjct: 347 DNSDSSVFAEIAPMPAGLETWVSLYLAITKNP-QRGTFVYDAATDRAKLNWTRDQNAPAV 405

Query: 411 QRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRD 470
                  +  ++I ++           +                                
Sbjct: 406 NA---AKALFDRINKANGTIYRYDLFGTQLKAFADDFC---------------------- 440

Query: 471 TVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVR 530
                +H  GGC +GK  D   +V G   L V DGS    S G NP  T+  L      R
Sbjct: 441 -----YHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVER 495

Query: 531 ILSERLASN 539
           I+ + + ++
Sbjct: 496 IIKQDVTAS 504

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 97.1 bits (241), Expect = 1e-21
 Identities = 79/554 (14%), Positives = 149/554 (26%), Gaps = 104/554 (18%)

Query: 38  NATAAKPVSYYDYIVIGGGTAGCPLAASLSQN-ASVLLLERG---DSPYGNPN------- 86
            +           +VIG G  G   A  L+Q      ++E G   D+P  +         
Sbjct: 2   PSRTLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLN 61

Query: 87  ---------------ITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINA 131
                          ++N   F    +               G+   + R +GGG+ +N 
Sbjct: 62  PDKRSMWLADKTDQPVSNFMGFGINKSIDRYVGV-LDSERFSGIKVYQGRGVGGGSLVNG 120

Query: 132 GFYTRAEPYYAREAGWDG---RLVNESYQWVEKKV---------VFRPPMQRWQSALRDG 179
           G     +  Y  E         + N+ +      +                ++    R  
Sbjct: 121 GMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKT 180

Query: 180 LVEVGVLPY-----NGFTYD-----------HLYGTKIGGTIIDQNSQRHTAADLLEYAN 223
               G           F Y             L G  I G    + S   T    L  A 
Sbjct: 181 AQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTY---LAQAA 237

Query: 224 PSG-LTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGAL 282
            +G LT+     V K+           +  +   D          +    + +  +AG++
Sbjct: 238 ATGKLTITTLHRVTKVAPATGSG---YSVTMEQIDEQGNVVAT--KVVTADRVFFAAGSV 292

Query: 283 GSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVG 342
           G+ +LL+                +      VG+G  +N    +   + +       Q   
Sbjct: 293 GTSKLLVSMK---------AQGHLPNLSSQVGEGWGNNGNIMVGRANHMWDATGSKQATI 343

Query: 343 ITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFN 402
            T         +   FA  +P P            I   +      +  +      +T+ 
Sbjct: 344 PTMGIDNWADPTAPIFAEIAPLPAGLETYVSLYLAITK-NPERARFQFNSGTGKVDLTWA 402

Query: 403 YFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTST 462
             +  + +    +    I +   +                  +  +    +  K      
Sbjct: 403 QSQNQKGIDMAKKVFDKINQKEGT------------------IYRTDLFGVYYKTWGDDF 444

Query: 463 SLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMM 522
           +            +H  GG  + K  D+  ++     L VVDGS    + G NP  T+  
Sbjct: 445 T------------YHPLGGVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITA 492

Query: 523 LGRYMGVRILSERL 536
           L      +I+S  +
Sbjct: 493 LAERNMDKIISSDI 506

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 69.1 bits (168), Expect = 2e-12
 Identities = 46/401 (11%), Positives = 96/401 (23%), Gaps = 67/401 (16%)

Query: 48  YDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYGNP---NITNSGSFSAELADLS-- 101
           YD +++G G  GC  A  L      V + + G+   G     +  N+  +   +      
Sbjct: 47  YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNV 106

Query: 102 ----------PTSPSQRFISEDGVVST-----------------------RARVLGGGTC 128
                     P +                                       RV+GG + 
Sbjct: 107 IQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMST 166

Query: 129 INAGFYTR---AEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGV 185
                  R    +     +   D     E  +   K        Q      ++ +    V
Sbjct: 167 AWTCATPRFDREQRPLLVKDDADADD-AEWDRLYTK---AESYFQTGTDQFKESIRHNLV 222

Query: 186 LPYNGFTYDHLYGTKIGGTIIDQ-----------NSQRHTAADLLEYANPSGLTVLLHAS 234
           L      Y      +       +           N+           A      +    +
Sbjct: 223 LNKLTEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVA 282

Query: 235 VHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 294
             +++             +   D    +          +  +++AGA+ + QLL+ SG G
Sbjct: 283 CERVVRNALNSE---IESLHIHDLISGDRFEI----KADVYVLTAGAVHNTQLLVNSGFG 335

Query: 295 PADHLKAHNITVVLDQPLVGQGMSDNPMNAI-FVPSPVPVEVSLIQVVGITQFGSYIEGA 353
                   N   +L    +G  +++  +     V S   ++     +      G      
Sbjct: 336 QLGRPNPANPPELLPS--LGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYSV 393

Query: 354 SGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPN 394
           +    A  +  P  +        +        +      P 
Sbjct: 394 TYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPIPFEDPEPQ 434

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 7/70 (10%)

Query: 476 WHYHGGCQVGK-------VVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMG 528
            H  G  ++G         V+ D +V G   L +        + G NP  T M L     
Sbjct: 547 LHLGGTHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSC 606

Query: 529 VRILSERLAS 538
             I      S
Sbjct: 607 EYIKQNFTPS 616

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 46 SYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSP---------------YGNPNITNS 90
             DY+VIG G AG      LS +  V++LER   P               YG P +   
Sbjct: 8  IEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRAL 67

Query: 91 GSFSAEL 97
           + S   
Sbjct: 68 TAASRAF 74

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 43/255 (16%), Positives = 77/255 (30%), Gaps = 70/255 (27%)

Query: 25  ACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLS---QNASVLLLERGDSP 81
                  +   ++ A AA P      +V+G G+AG    ASL+     A+V+L+++    
Sbjct: 99  KSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAG--FNASLAAKKAGANVILVDKAPFS 156

Query: 82  YGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL------GGGTCINAGFYT 135
            GN  I ++G  +A        +  Q      GV       +      G           
Sbjct: 157 GGNSMI-SAGGMNA------VGTKQQT---AHGVEDKVEWFIEDAMKGGRQ--------- 197

Query: 136 RAEP----YYAREAGWDGRLVNESYQWVEKK-VVFRPPMQR-WQSALRDGLVEVGVLPYN 189
           + +       A ++        +  QW+E          +       R         P+ 
Sbjct: 198 QNDIKLVTILAEQSA-------DGVQWLESLGANLDDLKRSGGARVDR------THRPHG 244

Query: 190 GFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPV 249
                   G   G  IID          L + A   G+   L++ V K++  +       
Sbjct: 245 --------GKSSGPEIID---------TLRKAAKEQGIDTRLNSRVVKLVVNDDHS---- 283

Query: 250 AHGVVFRDATDAEHI 264
             G V        ++
Sbjct: 284 VVGAVVHGKHTGYYM 298

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 48 YDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSP-YGNPN 86
          YD ++IGGG AG   A  LS+    +LL++       G+  
Sbjct: 7  YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKP 47

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 17/74 (22%)

Query: 41 AAKPVSYYDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSP---------------YG 83
              +  +DY+V+G G  G   A  L      SVL+++ G +P               + 
Sbjct: 17 RGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPGSGDSGRSMAAFRTFFS 76

Query: 84 NPNITNSGSFSAEL 97
          +         +  L
Sbjct: 77 STMNRLVAGSTVRL 90

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSP 81
           D +VIG G AG   A+ ++++   V ++E+   P
Sbjct: 6  VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFP 40

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 44.2 bits (104), Expect = 8e-05
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLS-QNASVLLLERGDSP 81
          +D IVIGGG  G  LA+ ++ +   VLLLER   P
Sbjct: 8  FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFP 42

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 47/290 (16%), Positives = 70/290 (24%), Gaps = 43/290 (14%)

Query: 42  AKPVSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPYGNPNITNSGSFSAELA 98
                 +D +VIG G  G   A  L Q     S+LL+E G  P        +        
Sbjct: 31  HFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQD 90

Query: 99  DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQW 158
             +       +  E          LG G  +            A E              
Sbjct: 91  IPAGQEAQAEWTREQL-----LGALGSGKTLEVEDRPLLHLLPAGEG------------- 132

Query: 159 VEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADL 218
                     +     AL D    + +L         +       T          A   
Sbjct: 133 --------SGLTPTLDALADFPEALALLDPARLPVARV--DPRALTY----RPGSLALLA 178

Query: 219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVS 278
            + A   G  +LL+     +    +     V +          +  A         IIV+
Sbjct: 179 AQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRA-------GVIIVA 231

Query: 279 AGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVP 328
           AGA   P L+         H +A+     LD     Q            P
Sbjct: 232 AGA-AGPALVEQGLGLHTRHGRAYRQFPRLDLLSGAQTPVLRASGLTLRP 280

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 30 APNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLS-QNASVLLLERGDSP 81
            ++           ++     +IGGG AG     +L      V + ER   P
Sbjct: 6  HHHHHSSGLVPRGSHMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFP 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 67/471 (14%), Positives = 126/471 (26%), Gaps = 149/471 (31%)

Query: 71  SVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISED-----GVVSTRARVLGG 125
           S+L  E  D    + +  +                 Q+F+ E        + +  +    
Sbjct: 44  SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 126 GTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGV 185
              +    Y        R+     RL N++ Q   K  V R         LR  L+E+  
Sbjct: 104 QPSMMTRMYI-----EQRD-----RLYNDN-QVFAKYNVSRLQPYL---KLRQALLELRP 149

Query: 186 LPYNGFTYDHLYGTKIGGT--------------IIDQN---------SQRHTAADLLEYA 222
                     + G  + G+              +  +             ++   +LE  
Sbjct: 150 AKNVL-----IDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM- 201

Query: 223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGAL 282
               L  LL+        R+   +         +          LR   K++   +    
Sbjct: 202 ----LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--------ELRRLLKSKPYENC--- 246

Query: 283 GSPQLLMLSGVGPADHLKAHNI---TVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQ 339
               LL+L  V  A    A N+    ++          +       F+ +     +SL  
Sbjct: 247 ----LLVLLNVQNAKAWNAFNLSCKILLT---------TRFKQVTDFLSAATTTHISLDH 293

Query: 340 VV-GITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHL--ELRTRNP--- 393
               +T      E  S                  +  K +       L  E+ T NP   
Sbjct: 294 HSMTLTPD----EVKS------------------LLLKYLD-CRPQDLPREVLTTNPRRL 330

Query: 394 -------NDTPSVTFNYFKEP--EDLQRCVQGISTIEKIIESKSFSKFK--YDNMSVETL 442
                   D  + T++ +K    + L         IE  +     ++++  +D +SV   
Sbjct: 331 SIIAESIRDGLA-TWDNWKHVNCDKLTT------IIESSLNVLEPAEYRKMFDRLSV--- 380

Query: 443 LNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYK 493
                       P  ++  T         +  IW       V  VV+  +K
Sbjct: 381 -----------FPPSAHIPT-------ILLSLIWFDVIKSDVMVVVNKLHK 413

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 39  ATAAKPVSYYDYIVIGGGTAGCPLAASLS---QNASVLLLERGDSPYGNPNITNSGSFSA 95
           A AA      D ++IG G AG  LAA++S     A V+LLE+   P GN  +  +G  +A
Sbjct: 118 AIAAGVKETTDVVIIGSGGAG--LAAAVSARDAGAKVILLEKEPIPGGNTKL-AAGGMNA 174

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 28  KAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLS---QNASVLLLERGDSPYGN 84
           + A + S  + A A+ P    D +V+G G AG   +A++S     A V+L+E+     GN
Sbjct: 107 ELAKDKSERQAALASAPHDTVDVVVVGSGGAG--FSAAISATDSGAKVILIEKEPVIGGN 164

Query: 85  PNITNSGSFSA 95
             +  +G  +A
Sbjct: 165 AKL-AAGGMNA 174

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 38 NATAAKPVSYYDYIVIGGGTAG--CPLAASLSQNASVLLLERGDSP 81
          N        +YD IVIGGG +G    + A+  + A+VLLL++G+  
Sbjct: 17 NLYFQSNAMHYDVIVIGGGPSGLMAAIGAA-EEGANVLLLDKGNKL 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	539
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	100.0
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	100.0
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	100.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	100.0
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.64
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.55
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.55
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.49
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.45
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.42
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.38
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.35
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.35
3dme_A	369	Conserved exported protein; structural genomics, P	99.3
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.29
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.28
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.27
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.23
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.23
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.22
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.22
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.21
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.19
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.14
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.13
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.13
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.12
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.11
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.1
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.09
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.08
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.08
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.06
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.98
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.98
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.98
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.97
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.97
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.97
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.97
3atr_A	453	Conserved archaeal protein; saturating double bond	98.95
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.91
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.9
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.88
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.87
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.8
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.78
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.74
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.73
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.72
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.7
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.69
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.68
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.66
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.66
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.66
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.62
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.62
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.62
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.61
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.61
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.61
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.59
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.59
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.55
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.55
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.51
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.51
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.5
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.49
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.48
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.48
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.46
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.46
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.45
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.45
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.45
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.44
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.44
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.43
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.41
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.4
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.4
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.39
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.39
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.37
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.34
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.33
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.33
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.33
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.33
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.32
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.31
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.31
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.23
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.22
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.22
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.21
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.2
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.17
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.14
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.07
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.05
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.05
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.04
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.02
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.0
4dna_A	463	Probable glutathione reductase; structural genomic	97.99
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.97
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.96
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.96
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.95
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.94
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.94
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.92
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.91
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.89
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.89
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.89
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.88
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.87
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.86
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.85
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.85
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.84
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.84
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.84
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.83
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.83
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.83
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.81
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.81
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.79
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.78
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.78
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.77
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.75
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.75
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.74
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.74
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.74
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.73
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.73
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.73
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.71
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.69
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.69
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.69
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.68
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.65
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.62
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.62
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.62
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.62
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.61
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.61
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.61
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.61
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.6
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.6
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.59
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.58
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.56
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.55
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.55
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.51
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.51
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.5
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.5
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.46
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.46
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.43
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.4
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.39
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.35
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.33
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.33
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.33
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.3
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.29
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.25
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.25
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.2
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.2
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.18
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.12
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.11
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.11
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.1
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.05
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.05
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.05
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.04
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.95
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	96.95
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.93
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.91
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	96.9
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.88
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.77
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.75
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.73
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.7
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.65
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.65
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.57
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.51
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.45
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.42
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.4
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.4
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.32
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	96.29
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.29
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.28
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.25
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.21
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.19
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.16
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	96.13
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	96.12
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.1
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.02
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.98
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.95
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.9
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.71
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.7
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.6
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	95.58
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.53
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.47
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.41
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.35
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.29
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.18
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	94.91
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	94.87
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	94.78
4dna_A	463	Probable glutathione reductase; structural genomic	94.57
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	93.09
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	92.89
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	92.85
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.52
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.46
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	92.41
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	92.41
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	91.78
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.75
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	91.65
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.37
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	91.07
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.62
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	90.15
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.49
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	89.19
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	88.8
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	88.64
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	88.52
1ojt_A	482	Surface protein; redox-active center, glycolysis,	88.41
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	88.3
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	87.96
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	87.9
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	87.86
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	87.83
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	87.57
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	87.53
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	87.48
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	87.25
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	87.25
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	87.14
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	86.96
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	86.69
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	86.61
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	86.39
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	86.32
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.26
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	86.04
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	85.93
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	85.37
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	85.18
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	84.88
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	84.85
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	84.8
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	84.54
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	84.53
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	84.51
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	84.41
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	84.28
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	84.09
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	83.98
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	83.86
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	83.64
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	83.53
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	83.36
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	83.04
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	83.0
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	82.8
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	82.49
3c85_A	183	Putative glutathione-regulated potassium-efflux S	82.45
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	82.37
4g65_A	461	TRK system potassium uptake protein TRKA; structur	82.21
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	81.91
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	81.79
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	81.7
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	81.54
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	81.18
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	80.64
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	80.46
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	80.4
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	80.29

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=100.00  E-value=3.4e-76  Score=626.69  Aligned_cols=492  Identities=43%  Similarity=0.784  Sum_probs=380.4

Q ss_pred             CCccccccccCCCCCCccEEEECCCcchHHHHHhhhcCCeEEEEcCCCCCCCCCCcccchhhHhhhcCCC-CCCCCcccc
Q 009241           32 NYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELADLS-PTSPSQRFI  110 (539)
Q Consensus        32 ~~~~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  110 (539)
                      .++|+.++....+..+|||||||||++|+++|.+|+||.+|||||+|+.....+....+..|...+.+.. |.+.+|...
T Consensus        11 ~~~~~~~~~~~~~~~~yD~IIVGsG~AG~v~A~rLseg~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~t~~q~~~   90 (536)
T 1ju2_A           11 YLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFV   90 (536)
T ss_dssp             GGGGEEEGGGSCSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEEE
T ss_pred             cCccccCcccccccCcccEEEECccHHHHHHHHHHhcCCcEEEEecCCCcCCCcceecchhHhhhccCCCcCcCCCcccc
Confidence            4467777666666678999999999999999999999889999999986433344444444544333222 566677777


Q ss_pred             CCCceeecCcccccchhhhccceeecCChhhHhcCC--CCHHHHhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCC
Q 009241          111 SEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAG--WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPY  188 (539)
Q Consensus       111 ~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~g--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  188 (539)
                      .++...+.+|+++||+|.+|++.+.|+.+.+++..|  |+++++.+||+++|+.+.+.+...++...+.++++++|+.+.
T Consensus        91 ~~~~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~G~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a~~~~G~~~~  170 (536)
T 1ju2_A           91 SEDGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPN  170 (536)
T ss_dssp             CTTSCEEEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHHHHHTTCCCE
T ss_pred             CCCcceeecceeccccccccCeEEEeCCHHHHhhccCCCChHHHHHHHHhhhcccCCCCCCCcHHHHHHHHHHHcCCCCC
Confidence            778888999999999999999999999998888878  999999999999999877777777888889999999998755


Q ss_pred             CCCccCCCCceeeeeeeecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEec
Q 009241          189 NGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLR  268 (539)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~  268 (539)
                      ++...+...++..+...+..+|.|++...+++.+++.|++|++++.|++|++++++  ..+++||++.+.+|+.++++++
T Consensus       171 ~~~~~~~~~g~~~g~~~~~~~g~r~s~~~~~~~~~~~~~~v~~~~~v~~i~~~~~~--~~~~~GV~~~~~~g~~~~~~v~  248 (536)
T 1ju2_A          171 HGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAP--GLTATGVIYRDSNGTPHQAFVR  248 (536)
T ss_dssp             EEECCBCCSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCSS--SCBEEEEEEECTTSCEEEEEEE
T ss_pred             CCcccCCCCCceeeeEEECCCCeEecHHHhhhhhcCCCcEEEeCCEEEEEEECCCC--CCEEEEEEEEeCCCceEEEEec
Confidence            44333334444444444456788887766777778899999999999999998631  1389999998756765555322


Q ss_pred             cCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCCccchhhHHhhhccccch
Q 009241          269 NGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGS  348 (539)
Q Consensus       269 ~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (539)
                        ++|+||||||+|+||+||++||||++++|+.+||+++.++|.||+||+||+...+.+..+.+......+..++..  .
T Consensus       249 --a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~~~~~~~~~~~~~~~~~~~~~~~--~  324 (536)
T 1ju2_A          249 --SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNFINILPPNPIEPTIVTVLGISN--D  324 (536)
T ss_dssp             --EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEEEEEECCSSCCCCCCCCEEEECS--S
T ss_pred             --cCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCcceeEEEEeCCCcccccchhhhHHH--H
Confidence              468999999999999999999999999999999999999999999999999877776655432211111111100  1


Q ss_pred             hhhccCCCC---------CCCCCCCCCCCcceEEEEeecCcCcceEEEe-cCCCCCCCCeeecCCCCChHHHHHHHHHHH
Q 009241          349 YIEGASGVN---------FAGGSPSPRPYRGGFIFEKIIGPVSTGHLEL-RTRNPNDTPSVTFNYFKEPEDLQRCVQGIS  418 (539)
Q Consensus       349 ~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l-~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~  418 (539)
                      |.....|+.         +..............+...+..|.|||+|+| +++||.+.|.|+++|+.++.|++.+.++++
T Consensus       325 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~~s~Dp~~~P~i~~~y~~~~~D~~~~~~~~~  404 (536)
T 1ju2_A          325 FYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMK  404 (536)
T ss_dssp             EEEEEEEECCCSSCCBTTBSSSCCCCCSSCEEEEEEEESSCSCCEEEECSCSSCTTSCCEECCCTTCSHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCChhhheeecCcccCCCCcceEEEeeecCCCCcceEEEeCCCCCcccCceecccccCCccHHHHHHHHHH
Confidence            111111100         0000000011123355667789999999999 889999999999999999999999999999


Q ss_pred             HHHHHHccccccccccccchhHHhhhhccCCCCC-----CCCCCCCCHHHHHHHHHhccCCCcccccccccccccCCCCc
Q 009241          419 TIEKIIESKSFSKFKYDNMSVETLLNMTASMPLN-----LLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYK  493 (539)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg~VvD~~~r  493 (539)
                      .+++++++.+++.+...+..         ..|+.     ..|...++++++++|++....+.+|++||||||+|||++||
T Consensus       405 ~~~~i~~~~~~~~~~~~~~~---------~~p~~~~~~~~~p~~~~~d~~~~~~ir~~~~t~~H~~GTcrMG~VVD~~lr  475 (536)
T 1ju2_A          405 KIGELLSTDALKPYKVEDLP---------GVEGFNILGIPLPKDQTDDAAFETFCRESVASYWHYHGGCLVGKVLDGDFR  475 (536)
T ss_dssp             HHHHHHTSGGGGGGCSSCCS---------TTCSCCBSSSCCCSCTTCHHHHHHHHHHHCEECSCCEESSCBTTTBCTTSB
T ss_pred             HHHHHHcCccchhhhccccc---------cCCCccccccCCCcccCCHHHHHHHHHhccCccccCcCccCCccEECCCCe
Confidence            99999999888776543210         00110     02333568999999999999999999999999999999999


Q ss_pred             EeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhhc
Q 009241          494 VLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS  538 (539)
Q Consensus       494 v~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~~~~~  538 (539)
                      |||++||||||+||||+.+++||++|+||+|+|+|+.|+++++++
T Consensus       476 V~Gv~nLrVvDaSv~P~~~~~np~~t~~aiAer~A~~ii~~~~~~  520 (536)
T 1ju2_A          476 VTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSAS  520 (536)
T ss_dssp             BTTCBTEEECSGGGCSSCSSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999998865

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=6e-75  Score=616.10  Aligned_cols=463  Identities=25%  Similarity=0.353  Sum_probs=352.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCCCCCCcccchhhHhhh----cCCCCCCCCccccCCCceeecCc
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSAEL----ADLSPTSPSQRFISEDGVVSTRA  120 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g  120 (539)
                      +|||||||+|.+||++|.+|++  +.+|||||+|+..........+..+....    .+|.|.+.+|....++.+.+.+|
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~~~~~r~~~~~rG   81 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQAGYNGRSIAYPRG   81 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCGGGTTCCCBCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCCCCCCceEeccCC
Confidence            6999999999999999999999  79999999998754333333333333222    36889999999999999999999


Q ss_pred             ccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhccccc-------------------------CCC
Q 009241          121 RVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVF-------------------------RPP  168 (539)
Q Consensus       121 ~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~-------------------------~~~  168 (539)
                      ++|||+|.+|+|.|.|+.+.+++.       .||+|+++.+||++.|+....                         .+.
T Consensus        82 k~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~~~~~  161 (566)
T 3fim_B           82 RMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGF  161 (566)
T ss_dssp             CBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEBSCSS
T ss_pred             cEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeeecCCC
Confidence            999999999999999999876542       579999999999998875421                         012


Q ss_pred             CchhHHHHHHHHHHc--CCCCCCCCccCCCCceeeeeeee---cCCCcccchhh-hhh-hcCCCCcEEEcCcEEEEEEec
Q 009241          169 MQRWQSALRDGLVEV--GVLPYNGFTYDHLYGTKIGGTII---DQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFR  241 (539)
Q Consensus       169 ~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~---~~~g~r~~~~~-~l~-~~~~~gv~i~~~t~V~~l~~~  241 (539)
                      ..+....+.++++++  |++...++..    +...|..++   ..+|.|+++.. |+. ...+.|++|++++.|+||+++
T Consensus       162 ~~~~~~~~~~a~~~~~~G~~~~~d~n~----~~~~G~~~~~~~~~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~  237 (566)
T 3fim_B          162 PTPLDDRVLATTQEQSEEFFFNPDMGT----GHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNS  237 (566)
T ss_dssp             CCTHHHHHHHHHHHTHHHHCBCSCGGG----SCCCEEEECCBSEETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHhcCCCccCCCCC----CCcceEEeeeeecCCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEee
Confidence            245667888888888  8764322211    122222221   13788887754 665 667889999999999999998


Q ss_pred             ---CCCCCCCeEEEEEEEeCCC-CeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccC
Q 009241          242 ---NKGKARPVAHGVVFRDATD-AEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM  317 (539)
Q Consensus       242 ---~~~~~~~~v~gV~~~~~~g-~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l  317 (539)
                         ++   .++++||++.+.+| +.++++    ++|+||||||+|+||+|||+|||||+++|+++||+++.|+|.||+||
T Consensus       238 ~~~~g---~~rA~GVe~~~~~g~~~~~v~----A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NL  310 (566)
T 3fim_B          238 GTTNG---LPAFRCVEYAEQEGAPTTTVC----AKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNL  310 (566)
T ss_dssp             EEETT---EEECCEEEEESSTTSCCEEEE----EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSB
T ss_pred             cCCCC---CCEEEEEEEEECCCceEEEEE----eeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhh
Confidence               22   02899999987556 666666    56999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEeeCCCccchh------------hHHhh----hc-c----ccchhhhccC-------------CCCCCCCCC
Q 009241          318 SDNPMNAIFVPSPVPVEVS------------LIQVV----GI-T----QFGSYIEGAS-------------GVNFAGGSP  363 (539)
Q Consensus       318 ~dh~~~~~~~~~~~~~~~~------------~~~~~----~~-~----~~~~~~~~~~-------------g~~~~~~~~  363 (539)
                      +||+...+.+..+.+....            ..++.    +. .    ....|.+...             +. ..++.+
T Consensus       311 qDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~pd~~  389 (566)
T 3fim_B          311 SDHLLLPAAFFVNSNQTFDNIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGP-NSAHWE  389 (566)
T ss_dssp             BCCEEECCEEEESCSCSSGGGGTCHHHHHHHHHHHHHHSCSGGGCCSCSEEEEECCCTTCGGGGTSCCCSSST-TSCSEE
T ss_pred             hcCccceEEEEeCCCcccchhhcChHHHHHHHHHHHhcCCCCcccChhhheeeeccccchhhhhhhccccccC-CCCCEE
Confidence            9999877665443321110            01110    00 0    0011211100             00 000000


Q ss_pred             -------------CCCCCcceEEEEeecCcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHcccccc
Q 009241          364 -------------SPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFS  430 (539)
Q Consensus       364 -------------~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~  430 (539)
                                   ....-...++...+.+|.|||+|+|+++||.+.|.|+++|+.++.|++.+.++++.+++++.+.+++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~  469 (566)
T 3fim_B          390 TIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWA  469 (566)
T ss_dssp             EEEESSCCCTTSCCCSSCCEEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGT
T ss_pred             EEecccchhhcccCCCCCCEEEEEEeecCCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHhCcccC
Confidence                         0001123345567789999999999999999999999999999999999999999999999988888


Q ss_pred             ccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc------cccCCCCcEeccCCceEee
Q 009241          431 KFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG------KVVDHDYKVLGVDALRVVD  504 (539)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg------~VvD~~~rv~g~~nL~V~D  504 (539)
                      ++...+..           |+   ....++++++++|++....+.+|++||||||      +|||+++||||++||||||
T Consensus       470 ~~~~~~~~-----------P~---~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvD  535 (566)
T 3fim_B          470 DFVIRPFD-----------PR---LRDPTDDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVD  535 (566)
T ss_dssp             TTEEEESS-----------GG---GSCTTCHHHHHHHHHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECS
T ss_pred             CccccccC-----------CC---cccccchHHHHHHHhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcc
Confidence            77643321           11   0235689999999999999999999999998      7999999999999999999


Q ss_pred             cccCCCCCCcchHHHHHHHHHHHHHHHHHhh
Q 009241          505 GSTFYYSPGTNPQATVMMLGRYMGVRILSER  535 (539)
Q Consensus       505 aSv~P~~~~~nP~lti~ala~r~a~~i~~~~  535 (539)
                      +||||+.+++||++|+||+|+|+||.|++++
T Consensus       536 aSv~P~~~~~n~~~~~~~iaekaAd~I~~~~  566 (566)
T 3fim_B          536 GSILPFAPNAHTQGPIYLVGKQGADLIKADQ  566 (566)
T ss_dssp             GGGCCSCCSSCTHHHHHHHHHHHHHHHHHTC
T ss_pred             cccCCCCCCcCcHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999887653

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=6.2e-74  Score=608.90  Aligned_cols=469  Identities=23%  Similarity=0.299  Sum_probs=347.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCC-CCCCcccchhhHhhh---cCCCCCCCCccccCCCceeec
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPY-GNPNITNSGSFSAEL---ADLSPTSPSQRFISEDGVVST  118 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  118 (539)
                      .++|||||||||.|||++|.||+|  +.+|||||+|+... ..+....+..+...+   .+|.|.+.+|. ..++.+.+.
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-~~~r~~~~~   95 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-TNNQTALIR   95 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-TTSCCCEEC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-CCCCeeecc
Confidence            457999999999999999999998  78999999998422 233344444443332   36778787775 577888999


Q ss_pred             CcccccchhhhccceeecCChhhHhc------C-CCCHHHHhhhhhhhhcccc--------------------------c
Q 009241          119 RARVLGGGTCINAGFYTRAEPYYARE------A-GWDGRLVNESYQWVEKKVV--------------------------F  165 (539)
Q Consensus       119 ~g~~lGG~s~~~~~~~~r~~~~~~~~------~-gw~~~~~~~~~~~~~~~~~--------------------------~  165 (539)
                      +|++|||+|.+|+|.|.|+.+.+++.      . ||.|+++.+||++.|....                          .
T Consensus        96 rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl~v~~  175 (583)
T 3qvp_A           96 SGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGP  175 (583)
T ss_dssp             CBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEEEBC
T ss_pred             CceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCEEecC
Confidence            99999999999999999999876653      3 8999999999999887531                          0


Q ss_pred             C---CCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeeee----cCCCcccchhh-hhh-hcCCCCcEEEcCcEEE
Q 009241          166 R---PPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTII----DQNSQRHTAAD-LLE-YANPSGLTVLLHASVH  236 (539)
Q Consensus       166 ~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~g~r~~~~~-~l~-~~~~~gv~i~~~t~V~  236 (539)
                      .   ....++.+.+.++++++|++...++.    .+...|..++    ..+|.|+++.. |+. ..++.|++|++++.|+
T Consensus       176 ~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n----~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V~  251 (583)
T 3qvp_A          176 RDTGDDYSPIVKALMSAVEDRGVPTKKDFG----CGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVG  251 (583)
T ss_dssp             CCCSSCBCTHHHHHHHHHHTTTCCBCCCTT----SSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEEE
T ss_pred             CCCcccCCHHHHHHHHHHHHcCCCcCCCCC----CCCCceecccceeEcCCCcEecHHHHHHHHhhcCCCcEEEcCCEEE
Confidence            0   11245678888999999987533221    1222222221    23578887654 664 6678899999999999


Q ss_pred             EEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCcc
Q 009241          237 KILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQG  316 (539)
Q Consensus       237 ~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~  316 (539)
                      +|++++++ ..++++||++.+.+|+.++++    ++|+||||||+|+||+|||+|||||+++|+++||+++.|+| ||+|
T Consensus       252 rIl~d~~~-~~~ra~GV~~~~~~G~~~~v~----A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLP-VG~N  325 (583)
T 3qvp_A          252 KVLLSQNG-TTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP-VGLN  325 (583)
T ss_dssp             EEEEECSS-SSCEEEEEEEESSTTCEEEEE----EEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCC-TTCC
T ss_pred             EEEeccCC-CCCEEEEEEEEecCCcEEEEE----ECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCceeeCc-cccc
Confidence            99998421 013999999986578777776    56899999999999999999999999999999999999999 9999


Q ss_pred             CccCCCCeEEeeCCCccc--------hhhHHhhh--------c--cccchhhhc--cCCCC-----------------CC
Q 009241          317 MSDNPMNAIFVPSPVPVE--------VSLIQVVG--------I--TQFGSYIEG--ASGVN-----------------FA  359 (539)
Q Consensus       317 l~dh~~~~~~~~~~~~~~--------~~~~~~~~--------~--~~~~~~~~~--~~g~~-----------------~~  359 (539)
                      |+||+...+.+....+..        .......+        +  ...+.|...  ..+..                 +.
T Consensus       326 LqDH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (583)
T 3qvp_A          326 LQDQTTATVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVN  405 (583)
T ss_dssp             BBCCEEEEEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHCHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhCccceEEEEecCCccccccccccccHHHhhccchHHHHHHHHhhcchhhcccccccCccccHHHHhhhccchhhhcc
Confidence            999998877765442200        00000000        0  000001000  00000                 00


Q ss_pred             CCCCCCCC---C-cceEEEEeecCcCcceEEEecCCCCCCCCee-ecCCCCChHHHHHHHHHHHHHHHHHcccccccccc
Q 009241          360 GGSPSPRP---Y-RGGFIFEKIIGPVSTGHLELRTRNPNDTPSV-TFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKY  434 (539)
Q Consensus       360 ~~~~~~~~---~-~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~  434 (539)
                      ........   + ....+......|.|||+|+|+++||.+.|.| +++|+.++.|++.+.++++.+++++++.+++++..
T Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~P~SrG~v~l~s~dp~~~P~i~~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~  485 (583)
T 3qvp_A          406 HNVAYSELFLDTAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFA  485 (583)
T ss_dssp             SCCEEEEEEEECTTSEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSTTHHHHEE
T ss_pred             CCCCcceeeeccCCCceeeeeecccCCceEEEecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhCcchhhccc
Confidence            00000000   0 0112223347899999999999999999999 99999999999999999999999999887776654


Q ss_pred             ccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCceEeecccCC
Q 009241          435 DNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFY  509 (539)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~V~DaSv~P  509 (539)
                      .+..           |+..+ ...++++++++|++....+.+|++||||||     +|||++|||||++||||||+||||
T Consensus       486 ~~~~-----------pg~~~-~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P  553 (583)
T 3qvp_A          486 GETI-----------PGDNL-AYDADLSAWTEYIPYHFRPNYHGVGTCSMMPKEMGGVVDNAARVYGVQGLRVIDGSIPP  553 (583)
T ss_dssp             EEEE-----------SGGGS-CTTCCHHHHHHHGGGSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCS
T ss_pred             cccC-----------CCccc-ccCCCHHHHHHHHHhccCCCcCCCCceeCCCCCCCceECCCCeEecCCCeEEeecccCC
Confidence            3321           21111 123689999999999999999999999998     799999999999999999999999


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhhhh
Q 009241          510 YSPGTNPQATVMMLGRYMGVRILSERLA  537 (539)
Q Consensus       510 ~~~~~nP~lti~ala~r~a~~i~~~~~~  537 (539)
                      +.+++||++|+||+|+|+||.|++ ++.
T Consensus       554 ~~~~~n~~~t~~aiaeraAd~I~~-~~~  580 (583)
T 3qvp_A          554 TQMSSHVMTVFYAMALKISDAILE-DYA  580 (583)
T ss_dssp             SCCSSCSHHHHHHHHHHHHHHHHH-HHH
T ss_pred             CCCCcCcHHHHHHHHHHHHHHHHH-hhh
Confidence            999999999999999999996665 443

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=1.5e-71  Score=591.40  Aligned_cols=458  Identities=22%  Similarity=0.305  Sum_probs=336.8

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCC-CCCCcccchhhHhhh---cCCCCCCCCccccCCCcee--
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPY-GNPNITNSGSFSAEL---ADLSPTSPSQRFISEDGVV--  116 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--  116 (539)
                      .++|||||||||.|||++|.+|+| + .+|||||+|+... ..+....+..+....   .+|.|.+.    ..++...  
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~----~~~r~~~~~   79 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT----MVRRDDYER   79 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEE----EEEETTEEE
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEE----ECCcccccc
Confidence            457999999999999999999999 6 7999999998632 112222232232221   13445443    2334444  


Q ss_pred             ----ecCcccccchhhhccceeecCChhhHhc------CCCCHHHHhhhhhhhhcccccC--------------------
Q 009241          117 ----STRARVLGGGTCINAGFYTRAEPYYARE------AGWDGRLVNESYQWVEKKVVFR--------------------  166 (539)
Q Consensus       117 ----~~~g~~lGG~s~~~~~~~~r~~~~~~~~------~gw~~~~~~~~~~~~~~~~~~~--------------------  166 (539)
                          +.+|+++||+|.+|+|.|.|+.+.+++.      .+|.|+++.+||++.|......                    
T Consensus        80 ~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~v~~  159 (577)
T 3q9t_A           80 IEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISH  159 (577)
T ss_dssp             EEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEEEEE
T ss_pred             ccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCEEeeC
Confidence                8999999999999999999999877654      5799999999999987643211                    


Q ss_pred             C-C---CchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeeee---cCCCcccchhhhhhhcCCCCcEEEcCcEEEEEE
Q 009241          167 P-P---MQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTII---DQNSQRHTAADLLEYANPSGLTVLLHASVHKIL  239 (539)
Q Consensus       167 ~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~  239 (539)
                      + .   ..++...+.++++++|+....+..    .+...|..+.   ..+|.|.+...+  ...+.|++|++++.|++|+
T Consensus       160 ~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n----~~~~~G~~~~~~~~~~g~R~s~~~~--l~~r~Nl~v~~~a~v~ri~  233 (577)
T 3q9t_A          160 AELIDEMAPFRENLTKAWKSMGQPLIENIY----DGEMDGLTHCCDTIYRGQRSGSFLF--VKNKPNITIVPEVHSKRLI  233 (577)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHTTCCBCSCCS----SSCCCEEEECEESEETTEECCGGGG--SSSCTTEEEECSEEEEEEE
T ss_pred             CCCCcccchHHHHHHHHHHHcCCCcCCCCC----CCCcCeEEeecceecCCeEeeHHHH--HhcCCCeEEEcCcEEEEEE
Confidence            0 0   123566778888999986432221    1112221111   235777765444  3457899999999999999


Q ss_pred             ecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCcc
Q 009241          240 FRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSD  319 (539)
Q Consensus       240 ~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~d  319 (539)
                      +++.+   .+++||++.+.+|+.+++.    ++|+||||||+|+||+||++|||||+++|+++||+++.|+|.||+||||
T Consensus       234 ~~~~~---~~a~GV~~~~~~g~~~~v~----A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~D  306 (577)
T 3q9t_A          234 INEAD---RTCKGVTVVTAAGNELNFF----ADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMD  306 (577)
T ss_dssp             EETTT---TEEEEEEEEETTSCEEEEE----EEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBC
T ss_pred             EeCCC---CEEEEEEEEeCCCcEEEEE----eeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhhhhhhc
Confidence            98421   2999999987668777766    5689999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEeeCCCccch--h-----------hHHhh----hc-c----ccchhhhcc----------------CC--CCCC
Q 009241          320 NPMNAIFVPSPVPVEV--S-----------LIQVV----GI-T----QFGSYIEGA----------------SG--VNFA  359 (539)
Q Consensus       320 h~~~~~~~~~~~~~~~--~-----------~~~~~----~~-~----~~~~~~~~~----------------~g--~~~~  359 (539)
                      |+...+.+..+.+...  .           ..++.    +. .    ....|.+..                ..  ....
T Consensus       307 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (577)
T 3q9t_A          307 HPGVPFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSP  386 (577)
T ss_dssp             CEEEEEEEEECTTSSSHHHHTSCSHHHHHHHHHHHHHSCSGGGCCSEEEEEECCCHHHHTTCHHHHHHHHHTTTSCSSCT
T ss_pred             CcceeEEEEeCCCCccchhhhcchhHHHHHHHHHHhcCCCCcccchhheeEEeecChhhhcchhhhhhhhccccccccCC
Confidence            9988777654433210  0           00000    00 0    000010000                00  0000


Q ss_pred             CCCCC-------------------CCCCcceEEEEeecCcCcce-EEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHH
Q 009241          360 GGSPS-------------------PRPYRGGFIFEKIIGPVSTG-HLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGIST  419 (539)
Q Consensus       360 ~~~~~-------------------~~~~~~~~~~~~~~~p~s~g-~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~  419 (539)
                      ...+.                   ...-...++...+.+|.||| +|+|+++||.+.|.|+++|+.++.|++.+.++++.
T Consensus       387 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrGG~V~L~S~dp~~~P~i~p~yl~~~~D~~~~~~~~~~  466 (577)
T 3q9t_A          387 LGQPHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRF  466 (577)
T ss_dssp             TSCCSEEEEEESSCCGGGCSSSCCCSSSEEEEEEEEESSCCSCCEEEECSCSCTTSCCEEECCTTCSHHHHHHHHHHHHH
T ss_pred             CCCceEEEEecccccccccccccCCCCCCEEEEEEEeeeccccCCEEEeCCCCCCCCceEecCcCCCccHHHHHHHHHHH
Confidence            00000                   00012334556778999999 99999999999999999999999999999999999


Q ss_pred             HHHHH-ccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc-----cccCCCCc
Q 009241          420 IEKII-ESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYK  493 (539)
Q Consensus       420 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~r  493 (539)
                      +++++ .+++++.+...+..           |+    ...++++++++|+|....+.+|++||||||     +|||++||
T Consensus       467 ~~~i~~~~~~~~~~~~~e~~-----------p~----~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~~~~~VVD~~lr  531 (577)
T 3q9t_A          467 SYDLLFKGEGFKDLVESEYP-----------WE----MPLDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQGVVDPKLK  531 (577)
T ss_dssp             HHHHHHHSTTGGGTEEEEES-----------SC----CCTTCHHHHHHHHHHHCEECSCCBCTTCBCSSTTTCSBCTTCB
T ss_pred             HHHHHHhChhhhhccccccC-----------CC----CCcCCHHHHHHHHHhccccccccccceecCCCCCCceECCCCe
Confidence            99999 88888877654321           11    235789999999999999999999999999     59999999


Q ss_pred             EeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241          494 VLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       494 v~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~  534 (539)
                      |||++||||||+||||+.+++||++|+||+|+|+||.|+++
T Consensus       532 V~Gv~~LrVvDaSv~P~~~~~n~~a~~~~iaekaAd~I~~~  572 (577)
T 3q9t_A          532 VHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAE  572 (577)
T ss_dssp             BTTCBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCcEEeecccccCCCCCccHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999977654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=2.7e-69  Score=576.68  Aligned_cols=459  Identities=24%  Similarity=0.376  Sum_probs=342.3

Q ss_pred             CCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCCCCCCcccchhhHhh---hcCCCCCCCCccccCCCceeecCc
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSAE---LADLSPTSPSQRFISEDGVVSTRA  120 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g  120 (539)
                      .+|||||||||++|+++|.||+|  |.+|||||+|+.... +....+..+...   ..+|.|.+.+|....++.+.+.+|
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~-~~~~~p~~~~~~~~~~~dw~~~t~p~~~~~~~~~~~~rG   94 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTD-PDIWNPAAWPALQGRSYDWDYRTEAQAGTAGRAHHWARG   94 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCC-GGGGSGGGGGGTTTSTTBCCEECCCBGGGTTBCCEECCB
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCC-cchhChhhHhhccCCccccCccccccCCCCCCeEeccCc
Confidence            47999999999999999999998  689999999986432 333333333221   225778888999999999999999


Q ss_pred             ccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhcccccC----------------CCCchhHHHHH
Q 009241          121 RVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVFR----------------PPMQRWQSALR  177 (539)
Q Consensus       121 ~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~  177 (539)
                      ++|||+|.+|++.+.|+.+.+|+.       .+|+|+++.+||++.|......                ....++.+.+.
T Consensus        95 ~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~  174 (526)
T 3t37_A           95 RLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFI  174 (526)
T ss_dssp             CBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTTSSSSCSSCSEECBCCSTTSCHHHHHHH
T ss_pred             cEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCCccccCcCCCcCcccccccCCHHHHHHH
Confidence            999999999999999999987653       4699999999999998754321                12345677888


Q ss_pred             HHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hh-h-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEE
Q 009241          178 DGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LL-E-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVV  254 (539)
Q Consensus       178 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l-~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~  254 (539)
                      +.++++|+............++... ......|.+.+... ++ + ...+.|++|++++.|++|+++++     +++||+
T Consensus       175 ~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~~~-----~a~gv~  248 (526)
T 3t37_A          175 EAGASLGLPRLEGHNSGEMIGVTPN-SLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGN-----QVRSLE  248 (526)
T ss_dssp             HHHHHTTCCBCSSSCSSCCBSBCCC-CBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEETT-----EEEEEE
T ss_pred             HHHHHcCCCcccCCCCCcccccccc-cccccCCcccccccccccccccCCCCeEEEeCCEEEEEEecCC-----eEEEEE
Confidence            8999999875433221111111111 11123455655543 33 3 45678999999999999999887     999999


Q ss_pred             EEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEe-eCCCcc
Q 009241          255 FRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFV-PSPVPV  333 (539)
Q Consensus       255 ~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~-~~~~~~  333 (539)
                      +.+. +....+.     +|+||||||+|+||+|||+||||++.++..+||+++.++|.||+||+||+.....+ ....+.
T Consensus       249 ~~~~-~~~~~~~-----a~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~~~  322 (526)
T 3t37_A          249 VVGR-QGSAEVF-----ADQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPV  322 (526)
T ss_dssp             EEET-TEEEEEE-----EEEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEEEEEEESSCC
T ss_pred             EEec-CceEEEe-----ecceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccccccccccccceeEEeccCCc
Confidence            9874 4344443     79999999999999999999999999999999999999999999999998654432 222221


Q ss_pred             chhhHHh---hhccccchhhhcc-------CC--CCCCCCCCCCCCCcceEEEEeecCcCcceEEEecCCCCCCCCeeec
Q 009241          334 EVSLIQV---VGITQFGSYIEGA-------SG--VNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTF  401 (539)
Q Consensus       334 ~~~~~~~---~~~~~~~~~~~~~-------~g--~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~  401 (539)
                      .......   ..+.....+....       .+  .................+...+..|.|+|+|++.+.|+.+.|.|++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~srG~v~~~s~dp~~~p~i~~  402 (526)
T 3t37_A          323 PPSRLQHSESMAYMRADSFTAAGQPEIVVGCGVAPIVSESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDP  402 (526)
T ss_dssp             CCCSSCSEEEEEEECSSCSSCCSSCCEEEEEESSCCCCTTSCCCCTTSEEEEEEEESSCCCCBEEECSSSSTTSCCEEEC
T ss_pred             chHhhcchhhhhhhhcccccccCCcceeeecccccccccccccccCCcceeeeccccCccccCcceeccCCCccCceecc
Confidence            1110000   0000000000000       00  0000001111222334555667899999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccc
Q 009241          402 NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGG  481 (539)
Q Consensus       402 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt  481 (539)
                      +|+.++.|++.+.++++.+++++....++.+...+                ..|....+++++++|++....+.+|++||
T Consensus       403 ~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~~----------------~~pg~~~~~~~~~~~ir~~~~t~~H~~GT  466 (526)
T 3t37_A          403 AYLQTGRDRERFRRALEASRTIGHRDELAGWRERE----------------LLPGTPNSAAEMDDFIARSVITHHHPCGT  466 (526)
T ss_dssp             CTTCSHHHHHHHHHHHHHHHHHHTCGGGTTTEEEE----------------CSSCCCCSHHHHHHHHHHHEEECSCCBCT
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHcChhhhhccccc----------------cCCCCCCCHHHHHHHHHhcCccCcccCcc
Confidence            99999999999999999999999887777665433                12334568899999999999999999999


Q ss_pred             cccc----cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHH
Q 009241          482 CQVG----KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILS  533 (539)
Q Consensus       482 ~~mg----~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~  533 (539)
                      ||||    +|||++|||||++|||||||||||+.+++||++||||||||+||+.-.
T Consensus       467 crMG~d~~sVVD~~~rV~Gv~nL~VvDaSv~P~~~~~np~~ti~aiAEkaAd~~~~  522 (526)
T 3t37_A          467 CRMGKDPDAVVDANLRLKALDNLFVVDASIMPNLTAGPIHAAVLAIAETFARQYHH  522 (526)
T ss_dssp             TCBCSSTTCSBCTTCBBTTCSSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCCCCCEEcCCCCeEEEEcCcccCCcChHHHHHHHHHHHHHHHHhhc
Confidence            9999    699999999999999999999999999999999999999999997643

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=7e-69  Score=575.58  Aligned_cols=471  Identities=23%  Similarity=0.283  Sum_probs=345.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCCCCCCcc-cchhhHhhh---cCCCCCCCCccccCCCceeec
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNIT-NSGSFSAEL---ADLSPTSPSQRFISEDGVVST  118 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  118 (539)
                      ..+|||||||+|.+|+++|.+|++  |.+|+|||+|+.....+... .+..+...+   .+|.|.+.+  ...++.+.+.
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p--~~~~~~~~~~   99 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--LINNRTNNIK   99 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--CTTSCCCEEC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc--CCCCceeeee
Confidence            357999999999999999999999  89999999998654333333 232222222   245555444  4567788999


Q ss_pred             CcccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhccccc-----------C--------------
Q 009241          119 RARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVF-----------R--------------  166 (539)
Q Consensus       119 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~-----------~--------------  166 (539)
                      +|++|||+|.+|+|.+.|+.+.+|+.       .+|+|+++.+||+++|+.+..           .              
T Consensus       100 rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~v~~  179 (587)
T 1gpe_A          100 AGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGA  179 (587)
T ss_dssp             CBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEEEBC
T ss_pred             ccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCEEEcc
Confidence            99999999999999999999976653       479999999999999886542           1              


Q ss_pred             ----CCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh-hhh-hcCCCCcEEEcCcEEEEEEe
Q 009241          167 ----PPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILF  240 (539)
Q Consensus       167 ----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~-~l~-~~~~~gv~i~~~t~V~~l~~  240 (539)
                          ....+..+.+.++++++|++...........++.........+|.|+++.. |+. .+++.|++|++++.|++|++
T Consensus       180 ~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~~l~~  259 (587)
T 1gpe_A          180 RDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLF  259 (587)
T ss_dssp             CCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEE
T ss_pred             CCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCCEEEecceEECCCCcccCHHHHHHHHhhcCCCcEEEcCCEEEEEEE
Confidence                022456788899999999875433221111122111111114678887754 664 66778999999999999999


Q ss_pred             cCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccC
Q 009241          241 RNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDN  320 (539)
Q Consensus       241 ~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh  320 (539)
                      ++++ ...+++||++.+.+|+.+++.    ++|+||||||+|+||+||++||||++++|+++||+++.++| ||+||+||
T Consensus       260 ~~~~-~~~~~~GV~~~~~~g~~~~v~----A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlP-VG~nL~DH  333 (587)
T 1gpe_A          260 KQTA-SGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLP-VGINMQDQ  333 (587)
T ss_dssp             EEET-TEEEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECC-TTCSBBCC
T ss_pred             CCCC-CCCEEEEEEEEeCCCcEEEEE----ecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeCC-CCcchhcC
Confidence            7521 012899999985577766665    44999999999999999999999999999999999999999 99999999


Q ss_pred             CCCeEEeeCCCccch---------hhHHhh----hc-----cccchhhhcc---CC-CC---------------CCCCCC
Q 009241          321 PMNAIFVPSPVPVEV---------SLIQVV----GI-----TQFGSYIEGA---SG-VN---------------FAGGSP  363 (539)
Q Consensus       321 ~~~~~~~~~~~~~~~---------~~~~~~----~~-----~~~~~~~~~~---~g-~~---------------~~~~~~  363 (539)
                      +...+.+..+.+...         ....+.    ++     .....|....   .+ ..               +.....
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (587)
T 1gpe_A          334 TTTTVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVA  413 (587)
T ss_dssp             EEEEEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHSHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHHSCCE
T ss_pred             cccceEEEeCCCcccccchHHHHHHHHHHHhCCCCCccccccceeeEeecccccccccccccccccHHHHhhhccCCCCc
Confidence            988776654432110         000000    00     0000111110   00 00               000000


Q ss_pred             CCC----CCcceEEEEeecCcCcceEEEecCCCCCCCC-eeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccch
Q 009241          364 SPR----PYRGGFIFEKIIGPVSTGHLELRTRNPNDTP-SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMS  438 (539)
Q Consensus       364 ~~~----~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p-~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (539)
                      ...    ......+...+..|.|+|+|+|+++||++.| .|+++|+.++.|++.+.++++.+++++++.+++.+...+..
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  493 (587)
T 1gpe_A          414 FAELFMDTEGKINFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL  493 (587)
T ss_dssp             EEEEEEECTTEEEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEEE
T ss_pred             ceeeeecCCCcEEEEEEecCCccceeEEeCCCCcccCccEeecccCCChHHHHHHHHHHHHHHHHHcCcchhhhcccccC
Confidence            000    0112344456778999999999999999999 99999999999999999999999999999888776543311


Q ss_pred             hHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCceEeecccCCCCCC
Q 009241          439 VETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFYYSPG  513 (539)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~V~DaSv~P~~~~  513 (539)
                                 |+... ...++++++++|++....+.+|++||||||     +|||++|||||++||||||+||||+.++
T Consensus       494 -----------pg~~~-~~~~sd~~~~~~ir~~~~t~~H~~GTcrMG~~~~~sVVD~~lrV~Gv~nLrVvDaSv~P~~~~  561 (587)
T 1gpe_A          494 -----------PGYNL-VQNATLSQWSDYVLQNFRPNWHAVSSCSMMSRELGGVVDATAKVYGTQGLRVIDGSIPPTQVS  561 (587)
T ss_dssp             -----------SGGGS-CTTCCHHHHHHHHHHSCEECSCCBCTTCBSCGGGTCSBCTTCBBTTCBSEEECSTTCCSSCCS
T ss_pred             -----------CCccc-cCCCCHHHHHHHHHHhcCcccCccCccccCCCCCCceECCCCEEECCCCcEEeeeccCCCCCC
Confidence                       11111 123688999999999989999999999999     5999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHhh
Q 009241          514 TNPQATVMMLGRYMGVRILSER  535 (539)
Q Consensus       514 ~nP~lti~ala~r~a~~i~~~~  535 (539)
                      +||++|+||||+|+||.|+++.
T Consensus       562 ~Np~~ti~aiAeraAd~I~~~~  583 (587)
T 1gpe_A          562 SHVMTIFYGMALKVADAILDDY  583 (587)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999887654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=1.1e-67  Score=562.67  Aligned_cols=461  Identities=28%  Similarity=0.419  Sum_probs=341.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCCCCCCcccchhhHhhh---cCCCCCCCCccccCCCceeecCc
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPYGNPNITNSGSFSAEL---ADLSPTSPSQRFISEDGVVSTRA  120 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g  120 (539)
                      .+|||||||+|.+|+++|.+|++  |.+|+|||+|+..........+..+...+   .+|.|.+.+|.. .++.+.+.+|
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-~~~~~~~~rG   90 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-GNSFMRHARA   90 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-SCTTCEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-CCceEEeecc
Confidence            57999999999999999999999  68999999998643211122222232222   245566666666 6778899999


Q ss_pred             ccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhcccc------c-----------CCCCchhHHHH
Q 009241          121 RVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVV------F-----------RPPMQRWQSAL  176 (539)
Q Consensus       121 ~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~~~~  176 (539)
                      ++|||+|.+|++.+.|+.+.+|+.       .+|.|+++.+||+++|+...      +           .+...+..+.+
T Consensus        91 k~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~  170 (546)
T 2jbv_A           91 KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVAL  170 (546)
T ss_dssp             CSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEECCSCCHHHHHH
T ss_pred             cccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCCCCCCEEEecCCCCCHHHHHH
Confidence            999999999999999999865542       47999999999999987654      1           11234567888


Q ss_pred             HHHHHHcCCCCCCCCccCC--CCceeeeeeeecCCCcccchhh-hhhhc-CCCCcEEEcCcEEEEEEecCCCCCCCeEEE
Q 009241          177 RDGLVEVGVLPYNGFTYDH--LYGTKIGGTIIDQNSQRHTAAD-LLEYA-NPSGLTVLLHASVHKILFRNKGKARPVAHG  252 (539)
Q Consensus       177 ~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~g~r~~~~~-~l~~~-~~~gv~i~~~t~V~~l~~~~~~~~~~~v~g  252 (539)
                      .++++++|++.. ......  ..++......+..+|.|++... |+..+ ++.|++|++++.|++|++++++    +++|
T Consensus       171 ~~a~~~~G~~~~-d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~----~~~G  245 (546)
T 2jbv_A          171 LDACEQAGIPRA-KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADR----RCTG  245 (546)
T ss_dssp             HHHHHHTTCCBC-CSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEECTTS----BEEE
T ss_pred             HHHHHHCCCCcc-CCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHHhcCCCcEEEeCCEEEEEEECCCC----eEEE
Confidence            899999998754 221111  2222211111111677876544 66644 5789999999999999998732    8999


Q ss_pred             EEEEeCC-CCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCC
Q 009241          253 VVFRDAT-DAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPV  331 (539)
Q Consensus       253 V~~~~~~-g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~  331 (539)
                      |++.+.. |+.+++.    +.|.||||||+++||+||++||||++++|+.+||+++.++|.||+||+||+...+.+..+.
T Consensus       246 V~~~~~~~g~~~~i~----A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~~~~~~~~~  321 (546)
T 2jbv_A          246 VDIVDSAFGHTHRLT----ARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGVVQFEAKQ  321 (546)
T ss_dssp             EEEESSTTSCEEEEE----EEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEECCEEEEESS
T ss_pred             EEEEECCCCcEEEEE----eCccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhCccceEEEEecC
Confidence            9998632 6666665    3359999999999999999999999999999999999999999999999998877765543


Q ss_pred             ccchhhHHhhhccccchhhhccCC---C----CCCCC-C-------CCCCCCcceEEEEeecCcCcceEEEecCCCCCCC
Q 009241          332 PVEVSLIQVVGITQFGSYIEGASG---V----NFAGG-S-------PSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDT  396 (539)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~g---~----~~~~~-~-------~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~  396 (539)
                      +.....   ........|.....+   +    .+.+. .       ..........+...+..|.|+|+|+|+++||.+.
T Consensus       322 ~~~~~~---~~~~~~~~f~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~  398 (546)
T 2jbv_A          322 PMVAES---TQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNVTHARSRGTVRLRSRDFRDK  398 (546)
T ss_dssp             CCCSCC---SSSCCEEEEECSSTTCSSCSEEEEEESSCCCTTTGGGTCCCCSSEEEEEEEETTCCCCBEEECSSSCTTSC
T ss_pred             CCcccc---cchhheEEEEecCCCCCCCceEEEeccccccccccccCccCCCCeEEEEEEEcccCcccEEEecCCCCCCC
Confidence            321100   000000112111000   0    00000 0       0001112334455678999999999999999999


Q ss_pred             CeeecCCCCChH--HHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCC
Q 009241          397 PSVTFNYFKEPE--DLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMT  474 (539)
Q Consensus       397 p~i~~~~~~~~~--D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (539)
                      |.|+++|+.++.  |++.+.++++.+++++++.+++.+...+..           |+    ...++++++++|++....+
T Consensus       399 P~I~~~y~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----------p~----~~~~sd~~~~~~ir~~~~~  463 (546)
T 2jbv_A          399 PMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELS-----------PG----VEAQTDEELQDYIRKTHNT  463 (546)
T ss_dssp             CEEECCTTCCTTCHHHHHHHHHHHHHHHHHTSGGGTTTEEEEEE-----------SC----TTCCSHHHHHHHHHHHCEE
T ss_pred             ceecccccCCCchhHHHHHHHHHHHHHHHHcCcchhhccccccc-----------CC----CCCCCHHHHHHHHHhcCCc
Confidence            999999999999  999999999999999999888776543321           11    1346889999999999899


Q ss_pred             Ccccccccccc------cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241          475 IWHYHGGCQVG------KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       475 ~~H~~Gt~~mg------~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~  534 (539)
                      .+|++||||||      +|||++|||||++||||||+||||+++++||++||||+|+|+||.|+++
T Consensus       464 ~~H~~GTcrMG~~~d~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~  529 (546)
T 2jbv_A          464 VYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVADASVMPEHVTVNPNITVMMIGERCADLIRSA  529 (546)
T ss_dssp             CSCCBCTTCBCCTTCTTCSBCTTCBBTTSBSEEECSGGGCSSCCSSCCHHHHHHHHHHHHHHC---
T ss_pred             ccccccccccCCCCCCCceECCCCEEECCCCeEEeecccCCCCCCcchHHHHHHHHHHHHHHHHhh
Confidence            99999999999      7999999999999999999999999999999999999999999988765

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=100.00  E-value=1e-58  Score=495.77  Aligned_cols=448  Identities=22%  Similarity=0.258  Sum_probs=302.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcc--------------cchhhH-hhhcCCCCCCCCcc
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNIT--------------NSGSFS-AELADLSPTSPSQR  108 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~  108 (539)
                      ..+|||||||+|++|+++|.+|++ |.+|+|||+|+.........              ..+.+. ..+..    ...+.
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~~   80 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTD----SNPFW   80 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTC----SCCTT
T ss_pred             CCceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcC----CCccc
Confidence            457999999999999999999999 99999999998542110000              000100 00000    00011


Q ss_pred             ccCCCceeecCcccccchhhhccceeecCChhhHhc-C----CCCHHHHhhhhhhhhcccccC--C------CCchhHHH
Q 009241          109 FISEDGVVSTRARVLGGGTCINAGFYTRAEPYYARE-A----GWDGRLVNESYQWVEKKVVFR--P------PMQRWQSA  175 (539)
Q Consensus       109 ~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~-~----gw~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~  175 (539)
                        ........+|+++||+|.+|++.+.|+.+.+++. .    +|.+++  ++|++.+......  +      ...+....
T Consensus        81 --~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~~~w~~~~--p~~~k~e~~~~~~~~~~~~g~~~~~~~~~~  156 (546)
T 1kdg_A           81 --WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHA--PYTSKLSSRLPSTDHPSTDGQRYLEQSFNV  156 (546)
T ss_dssp             --BCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCH--HHHHHHHHHSCCBSCCSTTSCCCSCHHHHH
T ss_pred             --cccccccccceeecccccccceEEecCChHHhcCcccCccccCccc--HHHHHHHhcCCCCccCCCCCCccCCHHHHH
Confidence              0123456789999999999999999999877754 1    455544  8888877643210  0      12344567


Q ss_pred             HHHHHHHcCCCCCCCC-ccC-CCCceeeeeeeecCCCcccchh-hhhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEE
Q 009241          176 LRDGLVEVGVLPYNGF-TYD-HLYGTKIGGTIIDQNSQRHTAA-DLLE-YANPSGLTVLLHASVHKILFRNKGKARPVAH  251 (539)
Q Consensus       176 ~~~~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~g~r~~~~-~~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~  251 (539)
                      +.++++++|+...... ... ...++... .+...+|.|++.. .|+. ..++.|++|++++.|++|+++++     +++
T Consensus       157 ~~~a~~~~G~~~~~~~~~~~~~~~g~~~~-~~~~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~-----~~~  230 (546)
T 1kdg_A          157 VSQLLKGQGYNQATINDNPNYKDHVFGYS-AFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QIL  230 (546)
T ss_dssp             HHHHHHTTTCEECCGGGSTTCCTTEEEEC-CBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT-----EEE
T ss_pred             HHHHHHHCCCCcCCccCCcCCCCcEEeee-eeccCCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCC-----EEE
Confidence            7888888887532110 000 01111111 1111467777654 4666 44567999999999999999865     999


Q ss_pred             EEEEEeC-CCCeE--EEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhC------CCcce-----ecCcccCccC
Q 009241          252 GVVFRDA-TDAEH--IAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAH------NITVV-----LDQPLVGQGM  317 (539)
Q Consensus       252 gV~~~~~-~g~~~--~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~------gi~~~-----~~~~~vG~~l  317 (539)
                      ||++.+. +|+.+  ++.    +++.||||||+++||+||++||||++++|+.+      ||+++     .++| ||+||
T Consensus       231 gV~~~~~~~g~~~~~~v~----~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlp-VG~nL  305 (546)
T 1kdg_A          231 GVQTNDPTLGPNGFIPVT----PKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLP-VGMNA  305 (546)
T ss_dssp             EEEESCTTSSGGGEEEEE----EEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCC-TTTTB
T ss_pred             EEEEEecCCCceeEEEEE----eCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccccccCC-cccCc
Confidence            9998753 36532  333    57999999999999999999999999999998      58774     7899 99999


Q ss_pred             ccCCCCeEEeeCCCc-cchhh------------HHhhhccccch---------hhhccC---CC----C--CCCC---CC
Q 009241          318 SDNPMNAIFVPSPVP-VEVSL------------IQVVGITQFGS---------YIEGAS---GV----N--FAGG---SP  363 (539)
Q Consensus       318 ~dh~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~---------~~~~~~---g~----~--~~~~---~~  363 (539)
                      +||+...+.+..+.. .....            ..+.. ...+.         |+....   +.    .  +.+.   ..
T Consensus       306 ~DH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (546)
T 1kdg_A          306 QDNPSINLVFTHPSIDAYENWADVWSNPRPADAAQYLA-NQSGVFAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASVN  384 (546)
T ss_dssp             BCCCCEEEEEECTTCCCGGGGTTTTTSCCHHHHHHHHH-HSCSGGGSCSCCEEEEEEEECTTSCEEEEEEEEEESCSCCC
T ss_pred             ccCcceeEEEecCCcccccchhhhhcchhHHHHHHHHH-cCCcccccCCcceEEEEccCCCCcchhhhhheecccccccc
Confidence            999988776652211 00000            00000 00000         111000   00    0  0000   00


Q ss_pred             C---CCCCcceEEEEeecCc-CcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchh
Q 009241          364 S---PRPYRGGFIFEKIIGP-VSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSV  439 (539)
Q Consensus       364 ~---~~~~~~~~~~~~~~~p-~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (539)
                      .   ........+...+..| .|+|+|+|+++|  ..|.++++|+.++.|++.+.++++.+++++++.+...+.      
T Consensus       385 ~~~~~~~~~~~~~~~~~~~p~~srG~v~L~s~~--~~~~i~~~y~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~------  456 (546)
T 1kdg_A          385 SSLPYNASQIFTITVYLSTGIQSRGRIGIDAAL--RGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMI------  456 (546)
T ss_dssp             CSSCCCGGGEEEEEEEECTTCCCCBEEEECTTC--CEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEEE------
T ss_pred             cccccCCCCeEEEEeeecCCCCCCceEecCCCC--CCCcccccccCCchHHHHHHHHHHHHHHHhcCCCccccc------
Confidence            0   0001122333445677 999999999876  456788899999999999999999999998876432211      


Q ss_pred             HHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc-----cccCCCCcEeccCCceEeecccCCCCCCc
Q 009241          440 ETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKVLGVDALRVVDGSTFYYSPGT  514 (539)
Q Consensus       440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv~g~~nL~V~DaSv~P~~~~~  514 (539)
                                    .|...+++++++++++....+++|++||||||     +|||++|||||++||||||+||||+.+++
T Consensus       457 --------------~p~~~~~~~~~~~~~~~~~~t~~H~~GTcrMG~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~  522 (546)
T 1kdg_A          457 --------------TPDVTQTLEEYVDAYDPATMNSNHWVSSTTIGSSPQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTG  522 (546)
T ss_dssp             --------------ESCTTSCHHHHHHHSCGGGGCCSCCBCTTCBCSCTTTCSBCTTCBBTTCSSEEECSGGGCSSCCSS
T ss_pred             --------------CCCCCCCHHHHHHHHHHhcCcccccccceecCCCCCCeeECCCCeEccCCCcEEeEecccCCCCCc
Confidence                          11123577888888888788999999999999     69999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHh
Q 009241          515 NPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       515 nP~lti~ala~r~a~~i~~~  534 (539)
                      ||++||||+|+|+||.|+++
T Consensus       523 np~~ti~aiAeraAd~I~~~  542 (546)
T 1kdg_A          523 NPQGTLMSAAEQAAAKILAL  542 (546)
T ss_dssp             CSHHHHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999977764

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=100.00  E-value=1.2e-57  Score=481.71  Aligned_cols=436  Identities=18%  Similarity=0.208  Sum_probs=291.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC-CCCcccchhhH--hhhcCCCCCCCCc--------------
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG-NPNITNSGSFS--AELADLSPTSPSQ--------------  107 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~--------------  107 (539)
                      .+|||||||+|++|+++|.+|++ |.+|+|||+|+.... ......+..+.  ....+|.+.+.++              
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~t~p~~~~~~l~~~~~~~~   83 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN   83 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCCcccccccccccCcccccccccccccccccccccccccc
Confidence            46999999999999999999999 999999999985431 22222221111  1112455544433              


Q ss_pred             --ccc------CCCceeecCcccccchhhhccceeecCChhhHhc--CCCCHHHHh-hhhhhhhcccccCCCC-------
Q 009241          108 --RFI------SEDGVVSTRARVLGGGTCINAGFYTRAEPYYARE--AGWDGRLVN-ESYQWVEKKVVFRPPM-------  169 (539)
Q Consensus       108 --~~~------~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~gw~~~~~~-~~~~~~~~~~~~~~~~-------  169 (539)
                        ...      .++.+.+.+|++|||+|.+|++.+.|+.+.+|+.  .+|.++++. +||+++|+.+...+..       
T Consensus        84 ~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~~~~~  163 (504)
T 1n4w_A           84 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDT  163 (504)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred             ccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhccccchhhhhhHHHHHHHHHhCCCCCCcccccCC
Confidence              222      4667788999999999999999999999988875  578899999 9999999977654322       


Q ss_pred             --chhHHHHHHHHHHcCCCC----CC-CCc------cCCCCceeeee--eeecCCCcccch-hhhhhhc-CCCCcEEEcC
Q 009241          170 --QRWQSALRDGLVEVGVLP----YN-GFT------YDHLYGTKIGG--TIIDQNSQRHTA-ADLLEYA-NPSGLTVLLH  232 (539)
Q Consensus       170 --~~~~~~~~~~~~~~g~~~----~~-~~~------~~~~~~~~~~~--~~~~~~g~r~~~-~~~l~~~-~~~gv~i~~~  232 (539)
                        .+..+.+.++++++|+++    .+ .+.      ......|...+  ..-..+| |.+. ..|++.+ ++.|++|+++
T Consensus       164 ~~~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~l~~a~~~~n~~i~~~  242 (504)
T 1n4w_A          164 EWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTYLAAALGTGKVTIQTL  242 (504)
T ss_dssp             GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTHHHHHHHTTSEEEEES
T ss_pred             CcchHHHHHHHHHHHcCCCCccCCcccccCccccccCccccCCcccccccccCCCC-ccCHHHHHHHHHHhcCCcEEEeC
Confidence              244577888899999842    11 100      00000011000  0001456 7764 3466644 4457999999


Q ss_pred             cEEEEEEecCCCCCCCeEEEEEEEeCCC---CeEEEEeccCCCCeEEEcCCCcccHHHHHhcC-CCChhhhhhCCCccee
Q 009241          233 ASVHKILFRNKGKARPVAHGVVFRDATD---AEHIAYLRNGPKNEIIVSAGALGSPQLLMLSG-VGPADHLKAHNITVVL  308 (539)
Q Consensus       233 t~V~~l~~~~~~~~~~~v~gV~~~~~~g---~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SG-ig~~~~l~~~gi~~~~  308 (539)
                      +.|++|++++++   .+++||++.+.+|   +..++.     ++.||||||+|+||+||++|| ||        +|++. 
T Consensus       243 ~~V~~i~~~~~g---~~~~gV~~~~~~g~~~~~~~v~-----A~~VIlaaG~~~s~~lL~~Sg~ig--------~i~~~-  305 (504)
T 1n4w_A          243 HQVKTIRQTKDG---GYALTVEQKDTDGKLLATKEIS-----CRYLFLGAGSLGSTELLVRARDTG--------TLPNL-  305 (504)
T ss_dssp             EEEEEEEECTTS---SEEEEEEEECTTCCEEEEEEEE-----EEEEEECSHHHHHHHHHHHHHHTT--------SSTTC-
T ss_pred             CEEEEEEECCCC---CEEEEEEEeCCCCccceeEEEe-----eCEEEEccCCCCCHHHHHhccccC--------CCCCC-
Confidence            999999998632   2899999986566   344444     679999999999999999999 87        56654 


Q ss_pred             cCcccCccCccCCCCeEEeeCCC-ccchhhHHhhhccc--cchhhhccCCC-CCCCCCCCCCCC-cceEEEEeecCcCcc
Q 009241          309 DQPLVGQGMSDNPMNAIFVPSPV-PVEVSLIQVVGITQ--FGSYIEGASGV-NFAGGSPSPRPY-RGGFIFEKIIGPVST  383 (539)
Q Consensus       309 ~~~~vG~~l~dh~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~p~s~  383 (539)
                       ++.||+||+||+...+...... ... ..... +...  +..|.....+. .+....  ...+ ....++..+..|.++
T Consensus       306 -~~~VG~nl~dh~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~sr  380 (504)
T 1n4w_A          306 -NSEVGAGWGPNGNIMTARANHMWNPT-GAHQS-SIPALGIDAWDNSDSSVFAEIAPM--PAGLETWVSLYLAITKNPQR  380 (504)
T ss_dssp             -CTTTTCCBBCTTCEEEEEECCTTCCC-CSCCC-SSCCEEEEECCSSTTCEEEEEECC--CCSSCCCEEEEEEEECCCCC
T ss_pred             -ChhhccccccCCcceeeeccCCCCcc-cCcCC-CccEEEEeccCCCCCceEEEeccC--ChHHHhhhhhheeeeccCCC
Confidence             4589999999997665432111 100 00000 0000  00010000000 000000  0000 123344456689999


Q ss_pred             eEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHH-HHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHH
Q 009241          384 GHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGIS-TIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTST  462 (539)
Q Consensus       384 g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (539)
                      |+|+|+++|    |.|+++|+.++ | +.+.++++ .+++++++.+.  +...+                   ..  ..+
T Consensus       381 G~V~L~s~~----~~i~~~~~~~~-D-~~~~~~~~~~~~~i~~~~~~--~~~~~-------------------~~--~~~  431 (504)
T 1n4w_A          381 GTFVYDAAT----DRAKLNWTRDQ-N-APAVNAAKALFDRINKANGT--IYRYD-------------------LF--GTQ  431 (504)
T ss_dssp             BCEEEETTT----TEEEECCCGGG-G-HHHHHHHHHHHHHHHHHHTC--CBCCS-------------------SS--SSS
T ss_pred             cEEEecCCC----CceEeccCCCc-C-HHHHHHHHHHHHHHHhccCC--CcCCc-------------------hh--hhh
Confidence            999998766    47899999998 8 66777777 88888877653  11000                   00  000


Q ss_pred             HHHHHHHhccCCCcccccccccccccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhhhh
Q 009241          463 SLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLA  537 (539)
Q Consensus       463 ~~~~~~~~~~~~~~H~~Gt~~mg~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~~~~  537 (539)
                       ++.   ....+++|++||||||+|||++|||||++||||||+||||+++++||++||||||+|+||+|+++...
T Consensus       432 -~~~---~~~~~~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiAeraAd~I~~~~~~  502 (504)
T 1n4w_A          432 -LKA---FADDFCYHPLGGCVLGKATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVERIIKQDVT  502 (504)
T ss_dssp             -CCS---EECSEESSCBCSSCTTTTBCTTSBBTTCSSEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHHHHC-
T ss_pred             -hhh---hccCccccccCCceeeeEECCCCeEeccCCeEEeeccccCCCCCcChHHHHHHHHHHHHHHHHHhhcc
Confidence             000   03467899999999999999999999999999999999999999999999999999999988876554

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=100.00  E-value=3.7e-57  Score=478.01  Aligned_cols=432  Identities=17%  Similarity=0.186  Sum_probs=288.8

Q ss_pred             CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHh-----hhcCCCCCCCCc---------
Q 009241           43 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSA-----ELADLSPTSPSQ---------  107 (539)
Q Consensus        43 ~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------  107 (539)
                      .+..+||+||||+|++|+++|.+|++ |.+|+|||+|+....  .......|..     ...+|.+.+.+|         
T Consensus         7 ~~~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~   84 (507)
T 1coy_A            7 ADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFG   84 (507)
T ss_dssp             CTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBS
T ss_pred             CcCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCC--CCCccccccccccccccccccccccccccccccccc
Confidence            34567999999999999999999999 999999999975321  0000001111     012344555443         


Q ss_pred             ------ccc------CCCceeecCcccccchhhhccceeecCChhhHhc--CCCCHHHHh-hhhhhhhcccccCCCC---
Q 009241          108 ------RFI------SEDGVVSTRARVLGGGTCINAGFYTRAEPYYARE--AGWDGRLVN-ESYQWVEKKVVFRPPM---  169 (539)
Q Consensus       108 ------~~~------~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~gw~~~~~~-~~~~~~~~~~~~~~~~---  169 (539)
                            ...      .++.+.+.+|++|||+|.+|++.+.|+.+.+|+.  .+|.++++. +||+++|+.+...+..   
T Consensus        85 ~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~~~w~~~~l~~pyy~~~E~~~~~~~~~~~~  164 (507)
T 1coy_A           85 INKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAW  164 (507)
T ss_dssp             CCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHH
T ss_pred             cccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhCCccchhcchhHHHHHHHHHhCCCCCCCcc
Confidence                  233      4667788999999999999999999999988875  578889999 9999999987654322   


Q ss_pred             ------chhHHHHHHHHHHcCCCCC----C-CC--------c----cCCCCceeeeeeeecCCCcccch-hhhhhh-cCC
Q 009241          170 ------QRWQSALRDGLVEVGVLPY----N-GF--------T----YDHLYGTKIGGTIIDQNSQRHTA-ADLLEY-ANP  224 (539)
Q Consensus       170 ------~~~~~~~~~~~~~~g~~~~----~-~~--------~----~~~~~~~~~~~~~~~~~g~r~~~-~~~l~~-~~~  224 (539)
                            .+..+.+.++++++|+.+.    + .+        .    +..+..|..+    ..+| |++. ..|++. .++
T Consensus       165 ~~~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~g----c~~g-R~s~~~~~l~~a~~~  239 (507)
T 1coy_A          165 FESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYG----NNAG-KKSLDKTYLAQAAAT  239 (507)
T ss_dssp             HHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTC----CSSS-BCCTTTTHHHHHHHT
T ss_pred             ccccccchHHHHHHHHHHHcCCCCccCCcccccCcccccCCCcccCcccccccccc----CCCC-CcChHHHHHHHHHhc
Confidence                  2345678888999998421    1 10        0    0011111111    1457 7764 346663 445


Q ss_pred             CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCC---eEEEEeccCCCCeEEEcCCCcccHHHHHhcC-CCChhhhh
Q 009241          225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDA---EHIAYLRNGPKNEIIVSAGALGSPQLLMLSG-VGPADHLK  300 (539)
Q Consensus       225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~---~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SG-ig~~~~l~  300 (539)
                      .|++|++++.|++|++++++   .+++||++.+.+|.   .+++.     +++||||||+|+||+||++|| ||+     
T Consensus       240 ~n~~i~~~~~v~~i~~~~~g---~~~~gV~~~~~~g~~~~~~~~~-----A~~VIlaaGa~~sp~lL~~Sg~iG~-----  306 (507)
T 1coy_A          240 GKLTITTLHRVTKVAPATGS---GYSVTMEQIDEQGNVVATKVVT-----ADRVFFAAGSVGTSKLLVSMKAQGH-----  306 (507)
T ss_dssp             TCEEEECSEEEEEEEECSSS---SEEEEEEEECTTSCEEEEEEEE-----EEEEEECSHHHHHHHHHHHHHHTTS-----
T ss_pred             CCcEEEeCCEEEEEEECCCC---CEEEEEEEeCCCCcccccEEEE-----eCEEEEccCccCCHHHHHhcccCCC-----
Confidence            67999999999999998742   27999999864563   34444     679999999999999999999 872     


Q ss_pred             hCCCcceecCcccCccCccCCCCeEEe-eCC-Cccch--hhHHhhhccccchhhhccCCC-CCCCCCCCCCCC-cceEEE
Q 009241          301 AHNITVVLDQPLVGQGMSDNPMNAIFV-PSP-VPVEV--SLIQVVGITQFGSYIEGASGV-NFAGGSPSPRPY-RGGFIF  374 (539)
Q Consensus       301 ~~gi~~~~~~~~vG~~l~dh~~~~~~~-~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~-~~~~~~  374 (539)
                         ++  ...++||+||++|+...... ... ++...  .......+.   .|.....+. .+...+  ...+ ....++
T Consensus       307 ---lp--nl~d~VG~~l~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~  376 (507)
T 1coy_A          307 ---LP--NLSSQVGEGWGNNGNIMVGRANHMWDATGSKQATIPTMGID---NWADPTAPIFAEIAPL--PAGLETYVSLY  376 (507)
T ss_dssp             ---ST--TSCTTTTCCBBCTTEEEEEEECCTTSCCCSCCCSSCCEEEE---CTTCTTSCEEEEEECC--CCSSCCCEEEE
T ss_pred             ---CC--ccChhhCCccccCCcccccccccccccccccCCCcceEEEe---ccCCCCCCcEEEeccC--CHHHhhheeee
Confidence               22  12458999999998643211 111 11000  000000000   010000000 000000  0000 122334


Q ss_pred             EeecCcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHH-HHHHHHccccccccccccchhHHhhhhccCCCCCC
Q 009241          375 EKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGIS-TIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNL  453 (539)
Q Consensus       375 ~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (539)
                      ..+..|.++|+|+|+++|+    .|+++|+.++ |. .+.++++ .+++++++.+.  +...+                 
T Consensus       377 ~~~~~p~s~G~V~L~s~~~----~i~~~~~~~~-D~-~~~~~~~~~~~~i~~~~~~--~~~~~-----------------  431 (507)
T 1coy_A          377 LAITKNPERARFQFNSGTG----KVDLTWAQSQ-NQ-KGIDMAKKVFDKINQKEGT--IYRTD-----------------  431 (507)
T ss_dssp             EEEECCCCCBCEEEETTTT----EEEECCCGGG-GH-HHHHHHHHHHHHHHHHHTC--CBCSS-----------------
T ss_pred             EEEeeeCCCcEEEEccCCC----ceeeccCCCC-cH-HHHHHHHHHHHHHHhhcCC--cccCc-----------------
Confidence            4556799999999987654    8999999999 85 4555555 88888887652  21111                 


Q ss_pred             CCCCCCCHHHHHHHHHhccCCCcccccccccccccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHH
Q 009241          454 LPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILS  533 (539)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~  533 (539)
                      .  . ++++  +.|   ...+++|++||||||+|||++|||||++||||||+||||+++++||++||||||+|+||+|++
T Consensus       432 ~--~-~~d~--~~~---~~~~~~H~~GTcrMG~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~Np~~ti~alAeraAd~I~~  503 (507)
T 1coy_A          432 L--F-GVYY--KTW---GDDFTYHPLGGVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKIIS  503 (507)
T ss_dssp             C--C---CC--CSS---BCSEESCCBCSSCTTTTSCTTSBCTTSTTEEECSGGGSCSCCSSCSHHHHHHHHHHHHHHHHH
T ss_pred             c--c-ccch--hhh---cccccccccCCcchhheECCCCeEeccCCeEEeechhccCCCCcChHHHHHHHHHHHHHHHHH
Confidence            0  0 0000  112   346789999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhh
Q 009241          534 ERLA  537 (539)
Q Consensus       534 ~~~~  537 (539)
                      ++++
T Consensus       504 ~~~~  507 (507)
T 1coy_A          504 SDIQ  507 (507)
T ss_dssp             HTC-
T ss_pred             HhcC
Confidence            8763

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=100.00  E-value=1.1e-46  Score=405.70  Aligned_cols=444  Identities=14%  Similarity=0.115  Sum_probs=273.6

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccc----------hhhHhhh----cCC----C---
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNS----------GSFSAEL----ADL----S---  101 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~----------~~~~~~~----~~~----~---  101 (539)
                      |..+|||||||+|++|+++|+.|++ |.+|+||||++...........          ..+....    ...    .   
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~~~  122 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV  122 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCCCC
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhccccccccc
Confidence            4457999999999999999999999 9999999998865421110000          0000000    000    0   


Q ss_pred             -------CCCCCccccCC------Ccee----ecCcccccchhhhccceeecCChhhH--hcCCCC---HHHHhhhhhhh
Q 009241          102 -------PTSPSQRFISE------DGVV----STRARVLGGGTCINAGFYTRAEPYYA--REAGWD---GRLVNESYQWV  159 (539)
Q Consensus       102 -------~~~~~~~~~~~------~~~~----~~~g~~lGG~s~~~~~~~~r~~~~~~--~~~gw~---~~~~~~~~~~~  159 (539)
                             ...........      ..+.    ...+..+||.+.+|.+...+..+...  ....|.   .+++.++|...
T Consensus       123 ~~~~~~~~~~~~~v~l~~g~~~~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e~~~~l~~~~v~~~~~l~~~~~~~  202 (623)
T 3pl8_A          123 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  202 (623)
T ss_dssp             CCCSCTTSCCCSSCCSCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCcEEeccCCCcccccchhhhhhcccccccCcceeeccccccCChHHhhhhhcccCccChhhHHHHHHHH
Confidence                   00000000000      0011    12466789999999888777665320  011232   35566677766


Q ss_pred             hcccccCCCC--chhH-HHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccch-hhhhh-h------cCCCCcE
Q 009241          160 EKKVVFRPPM--QRWQ-SALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTA-ADLLE-Y------ANPSGLT  228 (539)
Q Consensus       160 ~~~~~~~~~~--~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~~~l~-~------~~~~gv~  228 (539)
                      +..+......  .... ......+....... ..  ...   .............+++. ..++. .      .++.|++
T Consensus       203 ~~l~~vgg~~~~~~~~~~~~~~~l~~~~~~~-~~--~~~---~p~a~~~~~~~~~r~s~~~~~l~~~~~l~~~~~~~nv~  276 (623)
T 3pl8_A          203 ESYFQTGTDQFKESIRHNLVLNKLTEEYKGQ-RD--FQQ---IPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFN  276 (623)
T ss_dssp             HHHHTEESCTTTTCHHHHHHHHHHHHHTTTT-SC--CEE---CCEEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEE
T ss_pred             HHhcccccccccCccccccchHHHHHhhhhc-cc--ccc---cchhhccCCCCccccchHHhhhhhhhcchhhccCCCEE
Confidence            6554332211  1111 11111222211100 00  000   00000111112223332 33444 2      3446999


Q ss_pred             EEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcce
Q 009241          229 VLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVV  307 (539)
Q Consensus       229 i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~  307 (539)
                      |++++.|++|+.++++   .+++||++.+ .+|+.+.+     .++.||||+|++.+|++|+.||||+..++..+||++ 
T Consensus       277 v~~~~~V~~i~~~~~~---~~v~GV~~~~~~~g~~~~i-----~A~~VIlaaG~~~s~~lL~~sgiG~~~~l~~~~i~~-  347 (623)
T 3pl8_A          277 LFPAVACERVVRNALN---SEIESLHIHDLISGDRFEI-----KADVYVLTAGAVHNTQLLVNSGFGQLGRPNPANPPE-  347 (623)
T ss_dssp             EECSEEEEEEEECTTS---SCEEEEEEEETTTCCEEEE-----CEEEEEECSCTTHHHHHHHTTTSSCCSSCCTTSCCS-
T ss_pred             EEeCCEEEEEEEECCC---CEEEEEEEEEcCCCcEEEE-----ECCEEEEcCCCcCCHHHHHhcCCCccccccccCCCC-
Confidence            9999999999997542   3899999987 46766555     478999999999999999999999999999999998 


Q ss_pred             ecCcccCccCccCCCCeEEeeCCCccchhhHHh---hhcccc-----------------chhh-------hcc-CC----
Q 009241          308 LDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQV---VGITQF-----------------GSYI-------EGA-SG----  355 (539)
Q Consensus       308 ~~~~~vG~~l~dh~~~~~~~~~~~~~~~~~~~~---~~~~~~-----------------~~~~-------~~~-~g----  355 (539)
                       ++|.||+||+||++..+.+...++........   .++..-                 ..|.       ... .+    
T Consensus       348 -~l~~vG~nl~dh~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~  426 (623)
T 3pl8_A          348 -LLPSLGSYITEQSLVFCQTVMSTELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKHPDWWNEKVKNHMMQHQEDPLPI  426 (623)
T ss_dssp             -SCTTTTBSCBCCCEEEEEEEECHHHHHHHTTTCEEESCTTSTTCEEECCTTCTTCSSCHHHHHHHHHHHHHCTTCCCSS
T ss_pred             -CCcccccchhhCcCceEEEEECCcccccccccccccccCCCcceecccccCcccccCCchhhhhhhhhhhccccccccc
Confidence             99999999999998887766553311100000   000000                 0000       000 00    


Q ss_pred             ----------------CCCC----CCCCCC----C----CCcceEEEEeecCcCcceEEEecC--CCCCCCCeeecCCCC
Q 009241          356 ----------------VNFA----GGSPSP----R----PYRGGFIFEKIIGPVSTGHLELRT--RNPNDTPSVTFNYFK  405 (539)
Q Consensus       356 ----------------~~~~----~~~~~~----~----~~~~~~~~~~~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~  405 (539)
                                      ..|.    .+....    .    .............|.++|+|+|++  +|+++.|.++++|..
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~n~v~L~~~~~D~~g~P~~~~~~~~  506 (623)
T 3pl8_A          427 PFEDPEPQVTTLFQPSHPWHTQIHRDAFSYGAVQQSIDSRLIVDWRFFGRTEPKEENKLWFSDKITDAYNMPQPTFDFRF  506 (623)
T ss_dssp             CTTCCCCEEECCCBTTBCEEEEEECCSCCCSCCCCSSCGGGEEEEEEEECCCCCTTCEEEEEEEEECTTSSEEEEEECCC
T ss_pred             ccccccccccccccccCcchhhhhhhhccccccccccccceEEEEEEEEeeccCCCCEEEECCCCcCCCCCceEEEEEeC
Confidence                            0000    000000    0    000111222345688899999976  899999999999999


Q ss_pred             ChH-HHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCccccccccc
Q 009241          406 EPE-DLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQV  484 (539)
Q Consensus       406 ~~~-D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~m  484 (539)
                      ++. |++++.++++.+.+++++++.........                   .            ....+++|++|||||
T Consensus       507 ~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------~------------~~~~~~~H~~gt~~m  555 (623)
T 3pl8_A          507 PAGRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQ-------------------F------------MEPGLVLHLGGTHRM  555 (623)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTTTEEECTTSCSE-------------------E------------CCTTTTCCCBCTTCB
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhcCCcccCchhh-------------------c------------cCCCCcccCCCceeC
Confidence            999 99999999999999998876543211000                   0            013568899999999


Q ss_pred             c------ccc-CCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241          485 G------KVV-DHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       485 g------~Vv-D~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~  534 (539)
                      |      +|| |++|||||++||||+|+|+||+++++||++||||||+|+|++|+++
T Consensus       556 g~~~~~~~vvvd~~~~~~~~~~l~v~d~s~~p~~~~~np~~t~~a~a~r~a~~i~~~  612 (623)
T 3pl8_A          556 GFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQN  612 (623)
T ss_dssp             CSSTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCeeEECCCCCEecCCCeEEecCCccCCCCCcChHHHHHHHHHHHHHHHHHH
Confidence            9      486 9999999999999999999999999999999999999999988875

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.64  E-value=1.6e-15  Score=160.13  Aligned_cols=190  Identities=18%  Similarity=0.215  Sum_probs=109.9

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV  122 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  122 (539)
                      ++.+|||||||+|++|+++|++|++ |.+|+||||++.                                          
T Consensus        38 ~~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~------------------------------------------   75 (510)
T 4at0_A           38 WDYEADVVVAGYGIAGVAASIEAARAGADVLVLERTSG------------------------------------------   75 (510)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS------------------------------------------
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC------------------------------------------
Confidence            3668999999999999999999999 999999999975                                          


Q ss_pred             ccchhhhccceeecCC-hhhHhcCC--CCHHHHhhhhhhhhcccccCCCCc---h---hHHHHHHHHHHcCCCCCCCCc-
Q 009241          123 LGGGTCINAGFYTRAE-PYYAREAG--WDGRLVNESYQWVEKKVVFRPPMQ---R---WQSALRDGLVEVGVLPYNGFT-  192 (539)
Q Consensus       123 lGG~s~~~~~~~~r~~-~~~~~~~g--w~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~g~~~~~~~~-  192 (539)
                      +||+|..+++.++.+. .......+  .+.+.+.   ++..+.........   .   ......+++++.|+....... 
T Consensus        76 ~GG~s~~s~G~~~~~~~~~~~~~~g~~ds~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~  152 (510)
T 4at0_A           76 WGGATALAGGFIYLGGGTPLQKACGFDDSPENMK---TFMMAALGPGADEEKITDYCEGSVEHYNWLVDCGVPFKESFWG  152 (510)
T ss_dssp             SCTTGGGSCCCEECCSSCHHHHHTTCCCCHHHHH---HHHHHHSCSSCCHHHHHHHHHTHHHHHHHHHHTTCCCCSCEEC
T ss_pred             CCCcchhcCcceecCCCCHHHHHhCCCCCHHHHH---HHHHHHhCCCCCHHHHHHHHHhhHHHHHHHHHcCCeecccccC
Confidence            5677877777654432 12222222  2223222   22211111111110   0   122344566677765322100 


Q ss_pred             -----cCCCCce------------------eeeeeeecC----CCccc----chhhhhhhcCCCCcEEEcCcEEEEEEec
Q 009241          193 -----YDHLYGT------------------KIGGTIIDQ----NSQRH----TAADLLEYANPSGLTVLLHASVHKILFR  241 (539)
Q Consensus       193 -----~~~~~~~------------------~~~~~~~~~----~g~r~----~~~~~l~~~~~~gv~i~~~t~V~~l~~~  241 (539)
                           .....+.                  ..+. ....    .+...    ....++..+++.|++|+++++|++|+.+
T Consensus       153 ~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~r~~-~~~~~~~~~g~~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~  231 (510)
T 4at0_A          153 EPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGH-VPQMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTD  231 (510)
T ss_dssp             SSSSSCSSSCSEECCSSTTSTTGGGTSCCCCCEE-CCCCSSCBTTTBCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEEC
T ss_pred             CcccccCCcccccccCcccccccccccCccccee-eecccccccccCCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEEC
Confidence                 0000000                  0000 0000    11111    1122445566679999999999999998


Q ss_pred             CCCCCCCeEEEEEEEeCCCCeEEEEeccCCC-CeEEEcCCCcccHHHHH
Q 009241          242 NKGKARPVAHGVVFRDATDAEHIAYLRNGPK-NEIIVSAGALGSPQLLM  289 (539)
Q Consensus       242 ~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a-~~VVlAaG~~~sp~lLl  289 (539)
                      +++    +|+||++.+ +++.+++.     + |.||||+|+++...-|+
T Consensus       232 ~~g----~v~GV~~~~-~g~~~~i~-----A~k~VVlAtGG~~~n~~m~  270 (510)
T 4at0_A          232 DTG----RVVGIVAKQ-YGKEVAVR-----ARRGVVLATGSFAYNDKMI  270 (510)
T ss_dssp             TTC----CEEEEEEEE-TTEEEEEE-----EEEEEEECCCCCTTCHHHH
T ss_pred             CCC----cEEEEEEEE-CCcEEEEE-----eCCeEEEeCCChhhCHHHH
Confidence            543    999999886 55555554     6 69999999998544444

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.55  E-value=4e-14  Score=151.57  Aligned_cols=189  Identities=15%  Similarity=0.163  Sum_probs=108.3

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccccc
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLG  124 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG  124 (539)
                      .++||||||+|++|+++|+.|++ |.+|+||||.+.                                          +|
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~------------------------------------------~g  162 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV------------------------------------------IG  162 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS------------------------------------------SC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC------------------------------------------CC
Confidence            36999999999999999999999 999999999975                                          45


Q ss_pred             chhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc------hhHHHHHHHHHHcCCCCCCCCccCCCCc
Q 009241          125 GGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ------RWQSALRDGLVEVGVLPYNGFTYDHLYG  198 (539)
Q Consensus       125 G~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  198 (539)
                      |.+...++.+........+..+.. +..+.++....+.-.......      .......+++.+.|+.... .  ....+
T Consensus       163 g~s~~a~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~-~--~~~~g  238 (571)
T 1y0p_A          163 GNAKLAAGGMNAAWTDQQKAKKIT-DSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTD-V--GMMGG  238 (571)
T ss_dssp             TTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCE-E--ECCTT
T ss_pred             CchhhcCceEEeCCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCCCCcc-C--cccCC
Confidence            666655554433332222223321 112222222111000001000      0112344566677765321 0  00011


Q ss_pred             eeeeeeeecCCCcccc--h-hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeE
Q 009241          199 TKIGGTIIDQNSQRHT--A-ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEI  275 (539)
Q Consensus       199 ~~~~~~~~~~~g~r~~--~-~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~V  275 (539)
                      ..........++....  . ..+...+++.|++|+++++|++|+.++++    +|+||.+.+.+|+...+.     ++.|
T Consensus       239 ~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~i~-----a~~V  309 (571)
T 1y0p_A          239 ASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG----TVKGILVKGMYKGYYWVK-----ADAV  309 (571)
T ss_dssp             CSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS----CEEEEEEEETTTEEEEEE-----CSEE
T ss_pred             cCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCC----eEEEEEEEeCCCcEEEEE-----CCeE
Confidence            1111111122221111  1 12444566679999999999999987733    899999986567655554     7899


Q ss_pred             EEcCCCcccHHHHH
Q 009241          276 IVSAGALGSPQLLM  289 (539)
Q Consensus       276 VlAaG~~~sp~lLl  289 (539)
                      |||+|++...+-|+
T Consensus       310 VlAtGg~~~n~~~~  323 (571)
T 1y0p_A          310 ILATGGFAKNNERV  323 (571)
T ss_dssp             EECCCCCTTCHHHH
T ss_pred             EEeCCCcccCHHHH
Confidence            99999998755444

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.55  E-value=2.5e-14  Score=152.94  Aligned_cols=190  Identities=16%  Similarity=0.194  Sum_probs=110.2

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccc
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL  123 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  123 (539)
                      +.++||||||+|++|+++|+.|++ |.+|+||||.+.                                          +
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~------------------------------------------~  156 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF------------------------------------------S  156 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS------------------------------------------S
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC------------------------------------------C
Confidence            457999999999999999999999 999999999975                                          4


Q ss_pred             cchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc------hhHHHHHHHHHHcCCCCCCCCccCCCC
Q 009241          124 GGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ------RWQSALRDGLVEVGVLPYNGFTYDHLY  197 (539)
Q Consensus       124 GG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~  197 (539)
                      ||.|...++.+........+..+.. +..+.++....+.........      .......+++.+.|+.... .  ....
T Consensus       157 gg~s~~s~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~-~--~~~~  232 (566)
T 1qo8_A          157 GGNSMISAGGMNAVGTKQQTAHGVE-DKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDD-L--KRSG  232 (566)
T ss_dssp             CTTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCE-E--ECCT
T ss_pred             CCcccccCceeEccCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCcccc-c--cccC
Confidence            5666666655543333232222221 112222222211111111100      0122345566677765311 0  0000


Q ss_pred             ceeeeeeeecCCCcccc--h-hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCe
Q 009241          198 GTKIGGTIIDQNSQRHT--A-ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNE  274 (539)
Q Consensus       198 ~~~~~~~~~~~~g~r~~--~-~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~  274 (539)
                      +..........++....  . ..+...+++.|++|+++++|++|+.++++    +|+||.+.+.+|+...+.     ++.
T Consensus       233 g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g----~v~Gv~~~~~~g~~~~i~-----A~~  303 (566)
T 1qo8_A          233 GARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH----SVVGAVVHGKHTGYYMIG-----AKS  303 (566)
T ss_dssp             TCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS----BEEEEEEEETTTEEEEEE-----EEE
T ss_pred             CCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCCC----cEEEEEEEeCCCcEEEEE-----cCE
Confidence            11011111111221111  1 12444556679999999999999988732    999999986567655554     699


Q ss_pred             EEEcCCCcccHHHHH
Q 009241          275 IIVSAGALGSPQLLM  289 (539)
Q Consensus       275 VVlAaG~~~sp~lLl  289 (539)
                      ||||+|++...+-|+
T Consensus       304 VVlAtGg~s~~~~~~  318 (566)
T 1qo8_A          304 VVLATGGYGMNKEMI  318 (566)
T ss_dssp             EEECCCCCTTCHHHH
T ss_pred             EEEecCCcccCHHHH
Confidence            999999998765544

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.49  E-value=1.3e-13  Score=145.48  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=45.1

Q ss_pred             cCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241          207 DQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ  286 (539)
Q Consensus       207 ~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~  286 (539)
                      +..|...-...+.+.+++.|++|+++++|++|+.+++     +++||++.  +|+.  +     .++.||++++...+-+
T Consensus       216 p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~-----~~~gV~~~--~g~~--~-----~ad~VV~~a~~~~~~~  281 (501)
T 4dgk_A          216 PRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGN-----KIEAVHLE--DGRR--F-----LTQAVASNADVVHTYR  281 (501)
T ss_dssp             ETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TSCE--E-----ECSCEEECCC------
T ss_pred             eCCCCcchHHHHHHHHHHhCCceeeecceeEEEeeCC-----eEEEEEec--CCcE--E-----EcCEEEECCCHHHHHH
Confidence            3444333333355566778999999999999999987     99999875  5754  3     3799999999888877


Q ss_pred             HHHh
Q 009241          287 LLML  290 (539)
Q Consensus       287 lLl~  290 (539)
                      .|+-
T Consensus       282 ~Ll~  285 (501)
T 4dgk_A          282 DLLS  285 (501)
T ss_dssp             ----
T ss_pred             Hhcc
Confidence            6663

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.45  E-value=6.5e-13  Score=141.92  Aligned_cols=188  Identities=21%  Similarity=0.198  Sum_probs=102.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccccc
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLG  124 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lG  124 (539)
                      .++||||||+|++|+++|+.|++ |.+|+||||.+.                                          +|
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~------------------------------------------~~  162 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI------------------------------------------PG  162 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSS------------------------------------------SC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC------------------------------------------CC
Confidence            46899999999999999999999 999999999975                                          34


Q ss_pred             chhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc------hhHHHHHHHHHHcCCCCCCCCccCCCCc
Q 009241          125 GGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ------RWQSALRDGLVEVGVLPYNGFTYDHLYG  198 (539)
Q Consensus       125 G~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~  198 (539)
                      |.+...++.+........+..+.. +..+.++....+.........      .......+++.+.|+.... .  ....+
T Consensus       163 ~~~~~a~gg~~~~~~~~~~~~g~~-ds~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~-~--~~~gg  238 (572)
T 1d4d_A          163 GNTKLAAGGMNAAETKPQAKLGIE-DKKQIMIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTD-V--GRMGG  238 (572)
T ss_dssp             TTGGGCCSCEECCSSSTTGGGTCC-CCTHHHHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHHTCCCCE-E--ECCTT
T ss_pred             cchhhhCCeeEccCCHHHHHhCCC-CCHHHHHHHHHHhcCCCCCHHHHHHHHHccHHHHHHHHhcCCcccc-c--cccCC
Confidence            555544444322221111111111 111111111111000000000      0122344566666765311 0  00011


Q ss_pred             eeeeeeeecCCCccc--ch-hhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeE
Q 009241          199 TKIGGTIIDQNSQRH--TA-ADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEI  275 (539)
Q Consensus       199 ~~~~~~~~~~~g~r~--~~-~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~V  275 (539)
                      ..........++...  .. ..+...+++.|++|+++++|++|+.++++    +|+||++.+.+|+...+.     ++.|
T Consensus       239 ~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~g----~v~GV~~~~~~G~~~~i~-----A~~V  309 (572)
T 1d4d_A          239 ASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG----KVTGVLVKGEYTGYYVIK-----ADAV  309 (572)
T ss_dssp             CSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC--C----CEEEEEEEETTTEEEEEE-----CSEE
T ss_pred             CcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECCCC----eEEEEEEEeCCCcEEEEE-----cCEE
Confidence            101111111222111  11 12444566679999999999999987722    899999986567655554     7999


Q ss_pred             EEcCCCcccHHHH
Q 009241          276 IVSAGALGSPQLL  288 (539)
Q Consensus       276 VlAaG~~~sp~lL  288 (539)
                      |||+|++...+-|
T Consensus       310 VlAtGg~~~~~~~  322 (572)
T 1d4d_A          310 VIAAGGFAKNNER  322 (572)
T ss_dssp             EECCCCCTTCHHH
T ss_pred             EEeCCCCccCHHH
Confidence            9999999864333

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.42  E-value=1.1e-12  Score=141.42  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=45.6

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|++++.|++|+.+++     +|.||.+.+ .+|+.+.+.     ++.||||+|+++.
T Consensus       164 L~~~a~~~gv~i~~~~~v~~L~~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlATGG~~~  221 (660)
T 2bs2_A          164 VANECLKLGVSIQDRKEAIALIHQDG-----KCYGAVVRDLVTGDIIAYV-----AKGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEECcEEEEEEecCC-----EEEEEEEEECCCCcEEEEE-----cCEEEEccCcchh
Confidence            34455567999999999999998765     999999875 467655554     7999999999875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.38  E-value=2.7e-12  Score=137.53  Aligned_cols=57  Identities=14%  Similarity=0.174  Sum_probs=46.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|++++.|++|+.+++     +|.||.+.+ .+|+.+.+.     ++.||||+|+++.
T Consensus       161 L~~~~~~~gv~i~~~~~v~~Li~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlATGG~~~  218 (621)
T 2h88_A          161 LYGRSLRYDTSYFVEYFALDLLMENG-----ECRGVIALCIEDGTIHRFR-----AKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHTTSCCEEEETEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----EEEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEEceEEEEEEEECC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCcccc
Confidence            44566678999999999999998765     999999876 467655554     7899999999875

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.35  E-value=3.6e-12  Score=136.26  Aligned_cols=58  Identities=12%  Similarity=0.092  Sum_probs=45.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|+++++|++|+.++++    ++.||.+.+ .+|+...+.     ++.||||+|+++.
T Consensus       149 L~~~~~~~gv~i~~~~~v~~L~~~~~g----~v~Gv~~~~~~~g~~~~i~-----A~~VVlAtGg~~~  207 (588)
T 2wdq_A          149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTALCIETGEVVYFK-----ARATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTS----CEEEEEEEETTTCCEEEEE-----EEEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEeCcEEEEEEECCCC----EEEEEEEEEcCCCeEEEEE-----cCEEEECCCCCcc
Confidence            444555679999999999999986333    899999876 467655554     7899999999875

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.35  E-value=4e-12  Score=134.65  Aligned_cols=62  Identities=11%  Similarity=0.179  Sum_probs=43.9

Q ss_pred             hhhhcCC-CCcEEEcCcEEEEEEecCCC--CCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANP-SGLTVLLHASVHKILFRNKG--KARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~-~gv~i~~~t~V~~l~~~~~~--~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+++ .|++|++++.|++|+.++++  ....++.||.+.+ .+|+...+.     ++.||||+|+++.
T Consensus       144 L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~-----A~~VVlAtGg~~~  209 (540)
T 1chu_A          144 LVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCH-----AKAVVLATGGASK  209 (540)
T ss_dssp             CHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEE-----CSEEEECCCCCGG
T ss_pred             HHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEE-----cCeEEECCCCccc
Confidence            3444444 79999999999999984321  0001799999886 356554554     7999999999874

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.30  E-value=2.4e-12  Score=129.72  Aligned_cols=63  Identities=17%  Similarity=0.172  Sum_probs=45.2

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc-CC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS-GV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S-Gi  293 (539)
                      +...+++.|++|+++++|++|..+++     .+..|..  .+|+...+.     ++.||+|+|++ +..|+... |+
T Consensus       156 l~~~~~~~Gv~i~~~~~v~~i~~~~~-----~~~~v~~--~~g~~~~~~-----a~~VV~A~G~~-s~~l~~~~~g~  219 (369)
T 3dme_A          156 YQGDAESDGAQLVFHTPLIAGRVRPE-----GGFELDF--GGAEPMTLS-----CRVLINAAGLH-APGLARRIEGI  219 (369)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECTT-----SSEEEEE--CTTSCEEEE-----EEEEEECCGGG-HHHHHHTEETS
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEcCC-----ceEEEEE--CCCceeEEE-----eCEEEECCCcc-hHHHHHHhcCC
Confidence            44566678999999999999998776     3233443  356544454     78999999985 77777665 55

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.29  E-value=3.2e-11  Score=129.25  Aligned_cols=58  Identities=16%  Similarity=0.166  Sum_probs=45.6

Q ss_pred             hhhhcCCCC-cEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccH
Q 009241          218 LLEYANPSG-LTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSP  285 (539)
Q Consensus       218 ~l~~~~~~g-v~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp  285 (539)
                      ++..+.+.| ++|++++.|++|+.+++     ++.||.+.+ .+|+...+.     ++.||+|+|+++..
T Consensus       140 L~~~~~~~gnv~i~~~~~v~~l~~~~g-----~v~Gv~~~~~~~G~~~~i~-----A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          140 LFQTSLQFPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHTTCTTEEEEETEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSCEEECCCCCGGG
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEEEeCC-----EEEEEEEEEcCCCcEEEEE-----cCeEEECCCCCccc
Confidence            445555666 99999999999998865     899998875 467654554     78999999998765

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.28  E-value=2.1e-11  Score=126.37  Aligned_cols=55  Identities=22%  Similarity=0.413  Sum_probs=42.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ  286 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~  286 (539)
                      +...+++.|++|+++++|++|..+++     ++.+|.+.  +|+  .+.     ++.||+|+|++..|.
T Consensus       140 L~~~~~~~GV~i~~~~~V~~i~~~~~-----~v~~V~~~--~G~--~i~-----Ad~VVlAtGg~s~~~  194 (447)
T 2i0z_A          140 LLTRLKDLGVKIRTNTPVETIEYENG-----QTKAVILQ--TGE--VLE-----TNHVVIAVGGKSVPQ  194 (447)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TCC--EEE-----CSCEEECCCCSSSGG
T ss_pred             HHHHHHHCCCEEEeCcEEEEEEecCC-----cEEEEEEC--CCC--EEE-----CCEEEECCCCCcCCC
Confidence            44555668999999999999998765     77888764  564  233     799999999988664

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.27  E-value=1.3e-11  Score=131.30  Aligned_cols=66  Identities=23%  Similarity=0.321  Sum_probs=50.8

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      +...+.+.|++|+++++|++|..+++     ++.||.+.+. +|+...+.     ++.||+|+|.+ +..++...|+.
T Consensus       176 L~~~a~~~G~~i~~~~~V~~l~~~~g-----~v~gV~~~d~~tg~~~~i~-----A~~VV~AaG~~-s~~l~~~~g~~  242 (561)
T 3da1_A          176 IMKEAVARGAVALNYMKVESFIYDQG-----KVVGVVAKDRLTDTTHTIY-----AKKVVNAAGPW-VDTLREKDRSK  242 (561)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----EEEEEECCGGG-HHHHHHTTTCC
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCC-----eEEEEEEEEcCCCceEEEE-----CCEEEECCCcc-hHHHHHhcCCC
Confidence            44456678999999999999999876     8999999863 45445554     79999999974 67777666553

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.23  E-value=8.2e-12  Score=126.55  Aligned_cols=36  Identities=39%  Similarity=0.527  Sum_probs=33.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhcCCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~   80 (539)
                      +.++||||||+|.+|+++|++|++|.+|+||||++.
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La~G~~V~vlE~~~~   42 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLSAHGRVVVLEREAQ   42 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHTTTSCEEEECSSSS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHhCCCCEEEEECCCC
Confidence            446899999999999999999999999999999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.23  E-value=1.4e-10  Score=123.72  Aligned_cols=65  Identities=18%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      ++..+.+.|++|+++|+|++|..+++     ++.+|.+.+. +|+...+.     ++.||+|+|++ +..++...|+
T Consensus       194 l~~~a~~~Ga~i~~~t~V~~l~~~~~-----~v~gV~~~d~~tg~~~~i~-----A~~VV~AaG~w-s~~l~~~~g~  259 (571)
T 2rgh_A          194 NIKKAAEDGAYLVSKMKAVGFLYEGD-----QIVGVKARDLLTDEVIEIK-----AKLVINTSGPW-VDKVRNLNFT  259 (571)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----BSCEEECCGGG-HHHHHTTCCS
T ss_pred             HHHHHHHcCCeEEeccEEEEEEEeCC-----EEEEEEEEEcCCCCEEEEE-----cCEEEECCChh-HHHHHHhhcc
Confidence            34456678999999999999998876     8999998763 35444454     79999999986 6677655443

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.22  E-value=8.4e-12  Score=127.70  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +..+|||||||+|++|+++|+.|++ |.+|+||||++.
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3557999999999999999999999 999999999975

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.22  E-value=2.2e-11  Score=131.23  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=44.6

Q ss_pred             hhhcCCC--CcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          219 LEYANPS--GLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       219 l~~~~~~--gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      ...+++.  |++|+.++.|++|+.++++  .++|.||.+.+ .+|+.+.+.     ++.||||+|+++.
T Consensus       173 ~~~a~~~~~gV~i~~~~~v~dLi~~~~~--~g~v~Gv~~~~~~~g~~~~i~-----Ak~VVLATGG~g~  234 (662)
T 3gyx_A          173 AEAAKNALGQDRIIERIFIVKLLLDKNT--PNRIAGAVGFNLRANEVHIFK-----ANAMVVACGGAVN  234 (662)
T ss_dssp             HHHHHHHHCTTTEECSEEECCCEECSSS--TTBEEEEEEEESSSSCEEEEE-----CSEEEECCCCBCS
T ss_pred             HHHHHhcCCCcEEEEceEEEEEEEeCCc--cceEEEEEEEEcCCCcEEEEE-----eCEEEECCCcccc
Confidence            3344444  9999999999999987651  12899998876 356655554     7999999999874

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.21  E-value=5.4e-11  Score=128.66  Aligned_cols=59  Identities=15%  Similarity=0.121  Sum_probs=43.9

Q ss_pred             hhhcCCC-Cc-EEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          219 LEYANPS-GL-TVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       219 l~~~~~~-gv-~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      ...+++. |+ +|++++.|++|+.++++  .++|+||.+.+ .+|+...+.     ++.||||+|+++.
T Consensus       158 ~~~~~~~~gv~~i~~~~~v~~L~~~~~~--~g~v~Gv~~~~~~~g~~~~i~-----A~~VVlAtGG~~~  219 (643)
T 1jnr_A          158 AEAAKMAVGEENIYERVFIFELLKDNND--PNAVAGAVGFSVREPKFYVFK-----AKAVILATGGATL  219 (643)
T ss_dssp             HHHHHHHHCGGGEECSEEEEEEEECTTC--TTBEEEEEEEESSSSCEEEEE-----CSEEEECCCCBCS
T ss_pred             HHHHHhcCCCcEEEecCEEEEEEEcCCc--cceeEEEEEEEecCCcEEEEE-----cCEEEECCCcccc
Confidence            3344445 99 99999999999987541  12899998765 456555554     7999999999875

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.19  E-value=3.3e-11  Score=122.27  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=33.2

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |..++||||||+|++|+++|++|++ |.+|+||||+.
T Consensus         2 m~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            2 LPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3457999999999999999999999 99999999985

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.14  E-value=2.1e-10  Score=118.56  Aligned_cols=38  Identities=24%  Similarity=0.353  Sum_probs=34.4

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSP   81 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~   81 (539)
                      ++.++||||||+|++|+++|++|++ |. +|+||||++..
T Consensus         3 ~~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             CCTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            3457999999999999999999999 99 99999998753

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.13  E-value=1.4e-10  Score=120.79  Aligned_cols=53  Identities=17%  Similarity=0.313  Sum_probs=40.3

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+++.|++++++++| +|+.+++     ++.||.+.+.+|+   +     .++.||+|+|++..
T Consensus       125 L~~~~~~~gv~i~~~~~v-~l~~~~~-----~v~Gv~v~~~~g~---~-----~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          125 LLKLAREEGIPIIEDRLV-EIRVKDG-----KVTGFVTEKRGLV---E-----DVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHTTCCEECCCEE-EEEEETT-----EEEEEEETTTEEE---C-----CCSEEEECCCCCGG
T ss_pred             HHHHHHhCCCEEEECcEE-EEEEeCC-----EEEEEEEEeCCCe---E-----EeeeEEECCCCCcc
Confidence            444455679999999999 9988765     8999987643332   2     37999999998753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.13  E-value=8e-11  Score=119.35  Aligned_cols=40  Identities=33%  Similarity=0.512  Sum_probs=34.1

Q ss_pred             cCCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           41 AAKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        41 ~~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +...+.++||||||+|++|+++|++|++ |.+|+||||+..
T Consensus        11 ~~~~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~   51 (382)
T 1ryi_A           11 IRAMKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTM   51 (382)
T ss_dssp             ---CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             hhccCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            3344567999999999999999999999 999999999864

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.12  E-value=4.9e-10  Score=117.85  Aligned_cols=60  Identities=15%  Similarity=0.017  Sum_probs=44.5

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM  289 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl  289 (539)
                      +...+.+.|++++++++|++|..++      ++.+|.+.+ .+|+...+.     ++.||+|+|++ +..++.
T Consensus       155 l~~~a~~~Gv~i~~~~~V~~l~~~~------~~~~V~~~d~~~G~~~~i~-----A~~VV~AtG~~-s~~l~~  215 (501)
T 2qcu_A          155 NAQMVVRKGGEVLTRTRATSARREN------GLWIVEAEDIDTGKKYSWQ-----ARGLVNATGPW-VKQFFD  215 (501)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEET------TEEEEEEEETTTCCEEEEE-----ESCEEECCGGG-HHHHHH
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEeC------CEEEEEEEECCCCCEEEEE-----CCEEEECCChh-HHHHHH
Confidence            4445667899999999999998764      467888765 356544554     79999999986 556554

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.11  E-value=1.4e-10  Score=118.27  Aligned_cols=35  Identities=37%  Similarity=0.607  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|++|+++|+.|++ |.+|+||||++.
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~   38 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHTF   38 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            46999999999999999999999 999999999874

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.10  E-value=3.9e-10  Score=115.16  Aligned_cols=36  Identities=36%  Similarity=0.542  Sum_probs=33.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc--C-CeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ--N-ASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~--G-~~VlvlEkG~~   80 (539)
                      +.++||||||+|++|+++|++|++  | .+|+||||+..
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~   57 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWL   57 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSST
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            457999999999999999999998  8 89999999873

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.09  E-value=1.4e-10  Score=118.23  Aligned_cols=35  Identities=37%  Similarity=0.618  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++|||||||+|++|+++|+.|++ |.+|+||||++.
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~   38 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            36999999999999999999999 999999999875

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.08  E-value=2.8e-10  Score=127.07  Aligned_cols=60  Identities=17%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      +...+++.|++|+++++|++|..+++     ++.+|...  +|   .+.     ++.||+|+|++ +..++...|+
T Consensus       157 L~~~a~~~Gv~i~~~t~V~~i~~~~~-----~v~~V~t~--~G---~i~-----Ad~VV~AaG~~-s~~l~~~~g~  216 (830)
T 1pj5_A          157 LIKRTESAGVTYRGSTTVTGIEQSGG-----RVTGVQTA--DG---VIP-----ADIVVSCAGFW-GAKIGAMIGM  216 (830)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TE---EEE-----CSEEEECCGGG-HHHHHHTTTC
T ss_pred             HHHHHHHcCCEEECCceEEEEEEeCC-----EEEEEEEC--Cc---EEE-----CCEEEECCccc-hHHHHHHhCC
Confidence            44566678999999999999998765     77777642  44   233     89999999986 5666655554

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.08  E-value=2.9e-10  Score=124.06  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+||||||+|.+|+++|++|++ |.+|+||||.+.
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  306 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEA  306 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            45999999999999999999999 999999999764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.06  E-value=3.8e-10  Score=123.32  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=32.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|.+|+++|++|++ |.+|+||||+..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~  298 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ  298 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence            46999999999999999999999 999999999864

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.98  E-value=1.3e-09  Score=105.77  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~   80 (539)
                      .+|||||||+|++|+++|+.|++  |.+|+||||.+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~   74 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   74 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence            46899999999999999999998  899999999875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.98  E-value=6.3e-10  Score=115.37  Aligned_cols=33  Identities=36%  Similarity=0.687  Sum_probs=31.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-C-CeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG   78 (539)
                      .++||||||+|++|+++|++|++ | .+|+||||.
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~   56 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG   56 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence            47999999999999999999999 9 999999993

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.98  E-value=1.3e-09  Score=112.00  Aligned_cols=57  Identities=23%  Similarity=0.248  Sum_probs=45.0

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM  289 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl  289 (539)
                      +...+++.|++|+++++|++|..+++     +++||.+   +|+.  +     .++.||+|++...+.+||-
T Consensus       202 l~~~~~~~G~~i~~~~~V~~i~~~~~-----~~~gv~~---~g~~--~-----~ad~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          202 LETVISANGGKIHTGQEVSKILIENG-----KAAGIIA---DDRI--H-----DADLVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEE---TTEE--E-----ECSEEEECSCHHHHHHHTT
T ss_pred             HHHHHHHcCCEEEECCceeEEEEECC-----EEEEEEE---CCEE--E-----ECCEEEECCCHHHHHHhcC
Confidence            44566678999999999999999876     8888865   3532  3     3799999999988887654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.97  E-value=6.1e-10  Score=113.09  Aligned_cols=34  Identities=29%  Similarity=0.528  Sum_probs=32.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++||||||+|++|+++|++|++ |.+|+||||+..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            5899999999999999999999 999999999864

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.97  E-value=4.6e-10  Score=113.27  Aligned_cols=34  Identities=26%  Similarity=0.473  Sum_probs=32.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||||||+|++|+++|++|++ |.+|+||||+..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            5899999999999999999999 999999999875

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.97  E-value=9.4e-10  Score=115.75  Aligned_cols=36  Identities=31%  Similarity=0.317  Sum_probs=33.2

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..++||||||+|++|+++|+.|++ |.+|+||||++.
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~  141 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKE  141 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCc
Confidence            345899999999999999999999 999999999964

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.95  E-value=1.2e-09  Score=113.47  Aligned_cols=56  Identities=20%  Similarity=0.324  Sum_probs=43.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      +...+.+.|++|+++++|++|..+++     +++||.+.+. +|+...+.     ++.||.|+|...
T Consensus       106 L~~~a~~~gv~i~~~~~v~~i~~~~~-----~v~gv~~~~~~~G~~~~~~-----ad~VV~AdG~~s  162 (453)
T 3atr_A          106 VLKEAQDRGVEIWDLTTAMKPIFEDG-----YVKGAVLFNRRTNEELTVY-----SKVVVEATGYSR  162 (453)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSEEEECCGGGC
T ss_pred             HHHHHHHcCCEEEeCcEEEEEEEECC-----EEEEEEEEEcCCCceEEEE-----cCEEEECcCCch
Confidence            34455557999999999999998776     8999988764 56544454     899999999754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.91  E-value=2.1e-09  Score=109.10  Aligned_cols=34  Identities=29%  Similarity=0.587  Sum_probs=32.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5999999999999999999999 999999999864

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.90  E-value=1.9e-09  Score=113.77  Aligned_cols=57  Identities=26%  Similarity=0.361  Sum_probs=45.5

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+.+.|++|+++++|++|..+++     ++.+|.+.+.+|+..++.     ++.||.|+|....
T Consensus       117 L~~~a~~~Gv~i~~~~~V~~v~~~~~-----~v~gv~~~~~dG~~~~i~-----ad~VI~AdG~~S~  173 (512)
T 3e1t_A          117 LLRNSERKGVDVRERHEVIDVLFEGE-----RAVGVRYRNTEGVELMAH-----ARFIVDASGNRTR  173 (512)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEEEETT-----EEEEEEEECSSSCEEEEE-----EEEEEECCCTTCS
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEECC-----EEEEEEEEeCCCCEEEEE-----cCEEEECCCcchH
Confidence            33455568999999999999998776     899999987778655554     7999999998653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.88  E-value=7e-09  Score=101.85  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=32.4

Q ss_pred             CCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .+|||||||+|++|+++|+.|++   |.+|+|||+++.
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            46999999999999999999998   899999999875

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.87  E-value=5.1e-09  Score=107.59  Aligned_cols=66  Identities=14%  Similarity=0.088  Sum_probs=45.9

Q ss_pred             cCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHH
Q 009241          207 DQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ  286 (539)
Q Consensus       207 ~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~  286 (539)
                      ...|...-...+...+++.|++|+++++|++|..+++     ++  |  .. +|+.  +     .++.||+|+|.....+
T Consensus       184 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-----~v--V--~~-~g~~--~-----~ad~Vv~a~~~~~~~~  246 (421)
T 3nrn_A          184 IRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEK-----KV--Y--TR-DNEE--Y-----SFDVAISNVGVRETVK  246 (421)
T ss_dssp             ETTCHHHHHHHHHHHHHTTTCEEESSCCEEEEETTTT-----EE--E--ET-TCCE--E-----ECSEEEECSCHHHHHH
T ss_pred             ecCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECC-----EE--E--Ee-CCcE--E-----EeCEEEECCCHHHHHH
Confidence            3445332233355566778999999999999998765     55  3  32 5543  3     3799999999988888


Q ss_pred             HHH
Q 009241          287 LLM  289 (539)
Q Consensus       287 lLl  289 (539)
                      ||-
T Consensus       247 ll~  249 (421)
T 3nrn_A          247 LIG  249 (421)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            663

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.80  E-value=9.5e-09  Score=105.45  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=32.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~   39 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKF   39 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            35999999999999999999999 999999999864

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.78  E-value=1.1e-08  Score=105.44  Aligned_cols=40  Identities=33%  Similarity=0.525  Sum_probs=36.1

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      |+++|||||||+|.+|+++|+.|++ |.+|+||||++....
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg   57 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGG   57 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCC
Confidence            4567999999999999999999999 999999999986543

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.74  E-value=2.4e-08  Score=106.57  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=32.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||||++|+++|+.|++ |.+|+|||+.+.
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~   57 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF   57 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCC
Confidence            36999999999999999999999 999999999864

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.73  E-value=2.9e-08  Score=96.93  Aligned_cols=35  Identities=23%  Similarity=0.455  Sum_probs=32.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .+|||+|||+|++|+++|+.|++   |.+|+|+|+.+.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            46899999999999999999997   689999999875

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.72  E-value=2.6e-08  Score=105.31  Aligned_cols=34  Identities=29%  Similarity=0.480  Sum_probs=32.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||||||||++|+.||+.|++ |.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            36999999999999999999999 99999999984

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.69  E-value=2.8e-08  Score=98.97  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc----CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ----NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~   80 (539)
                      +||+|||+|++|+++|+.|++    |.+|+|+||++.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            599999999999999999987    689999999864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.68  E-value=4.7e-08  Score=104.48  Aligned_cols=59  Identities=24%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe----CCCCe-------EEEEeccCCCCeEEEcCCCcccH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD----ATDAE-------HIAYLRNGPKNEIIVSAGALGSP  285 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~----~~g~~-------~~~~~~~~~a~~VVlAaG~~~sp  285 (539)
                      +...+++.|++|+++++|++|+.++++    +++||.+.+    .+|+.       ..+.     ++.||+|.|+...-
T Consensus       150 L~~~a~~~Gv~i~~g~~v~~l~~~~~g----~V~gV~~~~~g~~~~G~~~~~~~~g~~i~-----Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          150 MGEQAEALGVEVYPGYAAAEILFHEDG----SVKGIATNDVGIQKDGAPKTTFERGLELH-----AKVTIFAEGCHGHL  219 (584)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECTTS----SEEEEEECCEEECTTSCEEEEEECCCEEE-----CSEEEECCCTTCHH
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCCC----CEEEEEeCCccccCCCCcccccCCceEEE-----CCEEEEeeCCCchH
Confidence            344555679999999999999988754    788888753    34532       2343     89999999997764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.66  E-value=3.5e-08  Score=104.72  Aligned_cols=34  Identities=35%  Similarity=0.561  Sum_probs=32.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||||||||++|+.+|+.|++ |.+|+|||+++
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            47999999999999999999999 99999999984

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.66  E-value=6.8e-07  Score=87.72  Aligned_cols=62  Identities=18%  Similarity=0.198  Sum_probs=46.3

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      ..++.|+++++++.|+++..+ +     ++.+|++.+ .+|+...+.     ++.||+|+|.-.+..++..+|+
T Consensus       199 ~~~~~gv~~~~~~~v~~i~~~-~-----~~~~v~~~~~~~g~~~~~~-----~D~vv~a~G~~p~~~~~~~~g~  261 (323)
T 3f8d_A          199 VKKKPNVEFVLNSVVKEIKGD-K-----VVKQVVVENLKTGEIKELN-----VNGVFIEIGFDPPTDFAKSNGI  261 (323)
T ss_dssp             HHTCTTEEEECSEEEEEEEES-S-----SEEEEEEEETTTCCEEEEE-----CSEEEECCCEECCHHHHHHTTC
T ss_pred             HHhCCCcEEEeCCEEEEEecc-C-----ceeEEEEEECCCCceEEEE-----cCEEEEEECCCCChhHHhhcCe
Confidence            334569999999999999865 3     677888875 346654554     7999999998777677766655

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.66  E-value=1.2e-08  Score=104.10  Aligned_cols=35  Identities=40%  Similarity=0.602  Sum_probs=31.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .++||||||+|++|+++|+.|++   |.+|+||||+..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            45999999999999999999987   799999999854

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.62  E-value=1.2e-07  Score=92.61  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=31.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +++|||+|||+|+||++||++|++ |++|+|+|++.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~   39 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT   39 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            457999999999999999999999 99999999975

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.62  E-value=4.2e-08  Score=97.86  Aligned_cols=34  Identities=32%  Similarity=0.483  Sum_probs=32.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~   37 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5899999999999999999999 999999999874

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.62  E-value=1.1e-07  Score=99.81  Aligned_cols=39  Identities=36%  Similarity=0.383  Sum_probs=34.6

Q ss_pred             CCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           42 AKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        42 ~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++++++||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   45 (500)
T 2qa1_A            6 HHHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVE   45 (500)
T ss_dssp             --CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            345778999999999999999999999 999999999865

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.61  E-value=2.5e-07  Score=91.00  Aligned_cols=66  Identities=21%  Similarity=0.377  Sum_probs=47.2

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      +.+.+.+.|++++++++|++|..+++     ++.+|.+.+ .+|+...+     .++.||+|+|...++.+|..+|+
T Consensus       196 l~~~l~~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i-----~~D~vi~a~G~~p~~~~l~~~gl  262 (319)
T 3cty_A          196 YVQEIKKRNIPYIMNAQVTEIVGDGK-----KVTGVKYKDRTTGEEKLI-----ETDGVFIYVGLIPQTSFLKDSGV  262 (319)
T ss_dssp             HHHHHHHTTCCEECSEEEEEEEESSS-----SEEEEEEEETTTCCEEEE-----CCSEEEECCCEEECCGGGTTSCC
T ss_pred             HHHHHhcCCcEEEcCCeEEEEecCCc-----eEEEEEEEEcCCCceEEE-----ecCEEEEeeCCccChHHHhhccc
Confidence            33344468999999999999987654     688888875 25654444     48999999997666666554443

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.61  E-value=1.6e-07  Score=99.55  Aligned_cols=35  Identities=31%  Similarity=0.475  Sum_probs=33.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~   39 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPG   39 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46999999999999999999999 999999999875

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.61  E-value=1.9e-07  Score=87.48  Aligned_cols=33  Identities=30%  Similarity=0.425  Sum_probs=31.6

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||+|||+|++|+.+|..|++ |.+|+|||++.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            5999999999999999999999 99999999984

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.59  E-value=4.3e-08  Score=103.99  Aligned_cols=35  Identities=34%  Similarity=0.619  Sum_probs=32.3

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..+|||||||+|.+|+.+|+.|++ |.+|+|||+.+
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            457999999999999999999999 99999999974

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.59  E-value=1.9e-07  Score=95.26  Aligned_cols=37  Identities=27%  Similarity=0.263  Sum_probs=32.6

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+.|||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            3457999999999999999999999 999999999864

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.55  E-value=5.7e-08  Score=103.36  Aligned_cols=36  Identities=33%  Similarity=0.471  Sum_probs=30.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+|||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus        47 ~~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~   83 (570)
T 3fmw_A           47 ALTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE   83 (570)
T ss_dssp             ----CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            346999999999999999999999 999999999875

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.55  E-value=4e-08  Score=99.87  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5899999999999999999999 999999999763

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.51  E-value=5.7e-08  Score=101.80  Aligned_cols=36  Identities=28%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+||+|||||++|+++|..|++ |.+|+||||.+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence            456999999999999999999999 999999999864

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.51  E-value=2.5e-07  Score=96.97  Aligned_cols=37  Identities=35%  Similarity=0.410  Sum_probs=33.2

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+.++||||||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~   46 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQ   46 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            3567999999999999999999999 999999999865

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.50  E-value=3e-07  Score=93.57  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=32.6

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||+|||+|++|+++|+.|++ |.+|+||||.+.
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~   40 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR   40 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            35999999999999999999999 999999999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.49  E-value=1.2e-06  Score=92.27  Aligned_cols=66  Identities=15%  Similarity=0.234  Sum_probs=47.4

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHH-HHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQ-LLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~-lLl~SGi  293 (539)
                      +...+++.|++++++++|++|..++++    ++.++.+...+|+ ..+     .++.||+|+|...+.. +|...|+
T Consensus       261 l~~~l~~~GV~i~~~~~V~~i~~~~~~----~v~~~~v~~~~G~-~~i-----~aD~Vv~A~G~~p~~~~~l~~~gl  327 (523)
T 1mo9_A          261 VLDRMKEQGMEIISGSNVTRIEEDANG----RVQAVVAMTPNGE-MRI-----ETDFVFLGLGEQPRSAELAKILGL  327 (523)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEEECTTS----BEEEEEEEETTEE-EEE-----ECSCEEECCCCEECCHHHHHHHTC
T ss_pred             HHHHHHhCCcEEEECCEEEEEEEcCCC----ceEEEEEEECCCc-EEE-----EcCEEEECcCCccCCccCHHHcCC
Confidence            334556789999999999999876553    6766666554663 234     3799999999877766 5666665

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.48  E-value=2e-07  Score=98.73  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+||||||+|++|+.+|.+|++ |.+|+|||+.+.
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            456999999999999999999999 999999999874

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.48  E-value=7.7e-07  Score=90.44  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+||+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            35899999999999999999999 999999999864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.46  E-value=3.5e-07  Score=94.55  Aligned_cols=36  Identities=33%  Similarity=0.428  Sum_probs=32.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CC--eEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~~   80 (539)
                      ...+||+|||+|++|+++|..|++ |.  +|+|+|+.+.
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~   42 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   42 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCC
Confidence            346899999999999999999999 98  9999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.46  E-value=2.9e-07  Score=91.15  Aligned_cols=36  Identities=14%  Similarity=0.197  Sum_probs=33.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+||+|||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus         3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   39 (335)
T 2zbw_A            3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE   39 (335)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346999999999999999999999 999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.45  E-value=2.6e-07  Score=91.44  Aligned_cols=56  Identities=7%  Similarity=0.132  Sum_probs=42.0

Q ss_pred             CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      +..|+++++++.|++|..+++     ++.+|.+.+. +|+...+.     ++.||+|+|...++.++
T Consensus       220 ~~~gv~i~~~~~v~~i~~~~~-----~~~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~~  276 (338)
T 3itj_A          220 KNEKIEILYNTVALEAKGDGK-----LLNALRIKNTKKNEETDLP-----VSGLFYAIGHTPATKIV  276 (338)
T ss_dssp             HCTTEEEECSEEEEEEEESSS-----SEEEEEEEETTTTEEEEEE-----CSEEEECSCEEECCGGG
T ss_pred             hcCCeEEeecceeEEEEcccC-----cEEEEEEEECCCCceEEEE-----eCEEEEEeCCCCChhHh
Confidence            345999999999999987765     7889988763 34444443     79999999976555443

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.45  E-value=3.3e-07  Score=95.96  Aligned_cols=36  Identities=33%  Similarity=0.520  Sum_probs=31.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+|||+|||+|++|+++|.+|++ |.+|+|+||.+.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   59 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRST   59 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            346999999999999999999999 999999999764

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.45  E-value=3.4e-07  Score=91.71  Aligned_cols=36  Identities=28%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+||+|||+|++|+++|+.|++ |.+|+|||+.+.
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   48 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQ   48 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            446999999999999999999999 999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.44  E-value=3.8e-07  Score=96.36  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhh-c-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLS-Q-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La-~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|++|+.+|.+|+ + |.+|+|||+.+.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCC
Confidence            3689999999999999999999 8 999999999864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.44  E-value=9e-08  Score=91.39  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=32.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++||+|||||++|+++|+.|++ |.+|+||||.+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG   36 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4899999999999999999999 999999999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.43  E-value=6.9e-07  Score=92.86  Aligned_cols=36  Identities=33%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +.+|||||||+|++|+++|.+|++ |.+|+||||.+.
T Consensus         2 ~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~   38 (466)
T 3l8k_A            2 SLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGE   38 (466)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSS
T ss_pred             CccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            346999999999999999999999 999999997654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.41  E-value=3.3e-06  Score=82.48  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=44.5

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      ..++.|+++++++.|++|..+++     ++.+|.+...+|+...+     .++.||+|+|...++.++
T Consensus       192 ~~~~~gv~~~~~~~v~~i~~~~~-----~~~~v~~~~~~g~~~~~-----~~D~vv~a~G~~p~~~~~  249 (315)
T 3r9u_A          192 VKKNEKIELITSASVDEVYGDKM-----GVAGVKVKLKDGSIRDL-----NVPGIFTFVGLNVRNEIL  249 (315)
T ss_dssp             HHHCTTEEEECSCEEEEEEEETT-----EEEEEEEECTTSCEEEE-----CCSCEEECSCEEECCGGG
T ss_pred             HHhcCCeEEEeCcEEEEEEcCCC-----cEEEEEEEcCCCCeEEe-----ecCeEEEEEcCCCCchhh
Confidence            33578999999999999987765     88899887556765444     489999999976554443

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.40  E-value=1.6e-07  Score=92.19  Aligned_cols=34  Identities=35%  Similarity=0.549  Sum_probs=32.0

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||+|||+|+||+++|.+|++ |++|+|+||+.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~   39 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGI   39 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            37999999999999999999999 99999999974

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.40  E-value=3.4e-07  Score=90.30  Aligned_cols=34  Identities=35%  Similarity=0.404  Sum_probs=32.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+||+|||+|++|+++|+.|++ |.+|+|+|+.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   41 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            5899999999999999999999 999999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.39  E-value=6.5e-07  Score=94.85  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=33.3

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..++||||||+|++|+++|.+|++ |.+|+||||++.
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~   50 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   50 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346999999999999999999999 999999999875

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.39  E-value=5.2e-07  Score=90.56  Aligned_cols=33  Identities=33%  Similarity=0.594  Sum_probs=31.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~   79 (539)
                      ++||+|||+|++|+++|.+|++ |. +|+|||+.+
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            5899999999999999999999 99 999999986

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.37  E-value=6.9e-07  Score=91.39  Aligned_cols=61  Identities=18%  Similarity=0.222  Sum_probs=48.2

Q ss_pred             hhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          220 EYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       220 ~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      ...++.|+++++++.|++|..+++     ++.+|+..  +|+.  +     .++.||+|+|...+..++..+|+.
T Consensus       202 ~~l~~~GV~i~~~~~v~~i~~~~~-----~v~~v~l~--dG~~--i-----~aD~Vv~a~G~~p~~~l~~~~gl~  262 (415)
T 3lxd_A          202 AEHRAHGVDLRTGAAMDCIEGDGT-----KVTGVRMQ--DGSV--I-----PADIVIVGIGIVPCVGALISAGAS  262 (415)
T ss_dssp             HHHHHTTCEEEETCCEEEEEESSS-----BEEEEEES--SSCE--E-----ECSEEEECSCCEESCHHHHHTTCC
T ss_pred             HHHHhCCCEEEECCEEEEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECCCCccChHHHHhCCCC
Confidence            355678999999999999987665     78888775  5643  3     379999999988887787777764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.34  E-value=1.7e-07  Score=91.95  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=32.8

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |++.|||+|||+|+||++||.+|++ |.+|+|+|++.
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~   37 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFM   37 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4557999999999999999999999 99999999975

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.33  E-value=2.8e-06  Score=86.64  Aligned_cols=35  Identities=31%  Similarity=0.444  Sum_probs=32.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCe-EEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~~   80 (539)
                      .++||||||+|++|+++|..|++ |.+ |+||||.+.
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~   39 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   39 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            46899999999999999999999 999 999999864

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.33  E-value=2.1e-06  Score=94.11  Aligned_cols=36  Identities=33%  Similarity=0.419  Sum_probs=33.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ..+||+|||+|++|+++|+.|++ |.+|+|||+.+..
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~  371 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI  371 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence            36899999999999999999999 9999999998754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.33  E-value=9.9e-07  Score=93.26  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=33.2

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..++||||||+|++|+.+|.+|++ |.+|+|||+++.
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~   43 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED   43 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346999999999999999999999 999999999875

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.33  E-value=1.4e-06  Score=92.51  Aligned_cols=35  Identities=31%  Similarity=0.570  Sum_probs=32.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||||||+|++|+++|..|++ |.+|+||||.+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~   60 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46999999999999999999999 999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.32  E-value=1.9e-06  Score=89.47  Aligned_cols=35  Identities=29%  Similarity=0.408  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-C-----CeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-N-----ASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G-----~~VlvlEkG~~   80 (539)
                      ..|||||||+|++|+++|..|++ |     .+|+|||+.+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~   69 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGD   69 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCC
Confidence            46899999999999999999999 8     99999999875

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.31  E-value=2e-06  Score=89.64  Aligned_cols=35  Identities=26%  Similarity=0.420  Sum_probs=32.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~   81 (539)
                      .+||+|||+|.+|+++|++|++ |  .+|+|||+.+..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            5899999999999999999999 9  999999997653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.31  E-value=1.6e-06  Score=89.96  Aligned_cols=33  Identities=15%  Similarity=0.363  Sum_probs=30.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc----CCe---EEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ----NAS---VLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~----G~~---VlvlEkG~~   80 (539)
                      +||+|||+|++|+++|..|++    |.+   |+|+|+.+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCC
Confidence            699999999999999999976    788   999999865

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.23  E-value=2.7e-06  Score=83.16  Aligned_cols=31  Identities=32%  Similarity=0.622  Sum_probs=30.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERG   78 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG   78 (539)
                      |||+|||+|++|+++|..|++ |. +|+|+|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            799999999999999999999 99 99999996

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.22  E-value=3.1e-06  Score=86.13  Aligned_cols=62  Identities=15%  Similarity=0.275  Sum_probs=48.5

Q ss_pred             hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      ....++.|+++++++.|++|..+++     ++.+|+..  +|+.  +     .++.||+|+|...+..++..+|+.
T Consensus       191 ~~~l~~~GV~i~~~~~v~~i~~~~~-----~v~~V~~~--dG~~--i-----~aD~Vv~a~G~~p~~~l~~~~gl~  252 (404)
T 3fg2_P          191 HDRHSGAGIRMHYGVRATEIAAEGD-----RVTGVVLS--DGNT--L-----PCDLVVVGVGVIPNVEIAAAAGLP  252 (404)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TSCE--E-----ECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHHhCCcEEEECCEEEEEEecCC-----cEEEEEeC--CCCE--E-----EcCEEEECcCCccCHHHHHhCCCC
Confidence            3355678999999999999987765     78888764  5653  3     379999999988777787777764

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.22  E-value=3.4e-06  Score=91.09  Aligned_cols=37  Identities=30%  Similarity=0.475  Sum_probs=33.5

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~   80 (539)
                      +..++||||||+|++|+++|+.|++  |.+|+||||.+.
T Consensus        29 ~~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           29 VPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            3457999999999999999999998  899999999864

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.21  E-value=7.6e-07  Score=92.17  Aligned_cols=40  Identities=35%  Similarity=0.501  Sum_probs=36.1

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      ++.++||||||+|.+|+++|..|++ |++|+||||.+...+
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence            4567999999999999999999999 999999999987543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.20  E-value=5.9e-07  Score=88.74  Aligned_cols=36  Identities=22%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      ..++||+|||+|++|++||++|++   |++|+|+||++.
T Consensus        63 ~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~  101 (326)
T 3fpz_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            347899999999999999999974   899999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.17  E-value=6.3e-07  Score=94.34  Aligned_cols=34  Identities=41%  Similarity=0.674  Sum_probs=31.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||||||+|++|.++|.++++ |.||+|||+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            5999999999999999999999 999999998753

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.14  E-value=7.8e-07  Score=93.56  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=33.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPY   82 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~   82 (539)
                      ..+||||||||++|++||++|++  |.+|+|||+.+...
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            36999999999999999999987  89999999998754

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.07  E-value=1.4e-06  Score=89.37  Aligned_cols=33  Identities=48%  Similarity=0.793  Sum_probs=31.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |||||||+|++|+++|++|++ |.+|+|||+.+.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~   35 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGER   35 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            799999999999999999999 999999999765

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.05  E-value=2.1e-06  Score=90.35  Aligned_cols=45  Identities=29%  Similarity=0.441  Sum_probs=35.3

Q ss_pred             cccccccCCCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           35 FMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        35 ~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|......++..+|||||||+|++|+++|.+|++ |.+|+|+||.+
T Consensus        20 ~m~~~~~~~~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~   65 (519)
T 3qfa_A           20 HMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVT   65 (519)
T ss_dssp             ------CCCSSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCcccccCcCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            3444444555668999999999999999999999 99999999975

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.05  E-value=1.3e-06  Score=91.22  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=31.4

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .+|||||||+|++|+++|++|++ |.+|+||||+
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            46999999999999999999999 9999999994

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.04  E-value=1.3e-05  Score=84.50  Aligned_cols=35  Identities=34%  Similarity=0.541  Sum_probs=31.3

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-------------CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-------------NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-------------G~~VlvlEkG~~   80 (539)
                      ..+||||||+|++|+++|..|++             |.+|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            46899999999999999999986             689999999754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.02  E-value=2.6e-06  Score=85.40  Aligned_cols=37  Identities=30%  Similarity=0.308  Sum_probs=34.1

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |..++||||||+|.+|+++|++|++ |.+|+||||...
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            4567999999999999999999999 999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.00  E-value=2.3e-06  Score=89.12  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=32.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++|||+|||+|++|+++|++|++ |.+|+|+||++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~   37 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            46999999999999999999999 999999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.99  E-value=2.2e-06  Score=88.91  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .+|||||||+|++|+++|++|++ |.+|+||||+
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~   37 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF   37 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            36999999999999999999999 9999999994

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.97  E-value=1.9e-06  Score=90.14  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=31.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||||||+|++|+++|.+|++ |.+|+|+||++
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            5999999999999999999999 99999999975

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.96  E-value=1.4e-05  Score=84.08  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLER   77 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk   77 (539)
                      ...|||+|||+|++|+++|..|++ |.+|+|+|+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~  243 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE  243 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence            457999999999999999999999 999999986

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.96  E-value=3.9e-05  Score=80.55  Aligned_cols=34  Identities=35%  Similarity=0.563  Sum_probs=29.1

Q ss_pred             CccEEEECCCcchHHHHHhhhc----CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ----NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~   80 (539)
                      .+||||||||++|+++|+.|++    |.+|+||||.+.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            4799999999999999999987    689999999764

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.95  E-value=4.9e-06  Score=83.87  Aligned_cols=38  Identities=32%  Similarity=0.583  Sum_probs=34.4

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      +...+||+|||+|++|+++|++|++ |.+|+|||+.+..
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence            3457999999999999999999999 9999999998754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.94  E-value=3.1e-05  Score=80.63  Aligned_cols=34  Identities=38%  Similarity=0.719  Sum_probs=30.7

Q ss_pred             CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .+||||||+|++|+++|.+|++   |.+|+|||+.+.
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   72 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI   72 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            3699999999999999999998   689999999864

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.94  E-value=5.2e-06  Score=84.32  Aligned_cols=39  Identities=28%  Similarity=0.437  Sum_probs=34.6

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDSPY   82 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~~~   82 (539)
                      |.+++||+|||+|.+|+++|++|++  |.+|+|||+.+...
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            4557999999999999999999998  79999999987643

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.92  E-value=2.3e-06  Score=89.18  Aligned_cols=35  Identities=37%  Similarity=0.657  Sum_probs=32.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..+|||||||+|++|+++|.+|++ |.+|+|+||..
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            446999999999999999999999 99999999874

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.91  E-value=6e-06  Score=82.83  Aligned_cols=35  Identities=37%  Similarity=0.688  Sum_probs=32.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ++||+|||+|.+|+++|++|++ |.+|+|+|+++..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            3799999999999999999999 9999999998753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.89  E-value=3.8e-06  Score=87.11  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=32.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .++|||||||+|++|+++|.+|++ |.+|+|+|++.
T Consensus         2 ~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (463)
T 2r9z_A            2 TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA   37 (463)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            356999999999999999999999 99999999974

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.89  E-value=3.7e-06  Score=86.87  Aligned_cols=35  Identities=31%  Similarity=0.571  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +++|||||||+|++|+++|.+|++ |.+|+|+|++.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   37 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   37 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCCC
Confidence            346999999999999999999999 99999999974

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.89  E-value=4.6e-06  Score=86.66  Aligned_cols=35  Identities=34%  Similarity=0.400  Sum_probs=32.6

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +.++||||||+|++|+++|.+|++ |.+|+|||++.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~   37 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERGT   37 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            457999999999999999999999 99999999984

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.88  E-value=5.2e-06  Score=82.68  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-C------CeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N------ASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G------~~VlvlEkG~~   80 (539)
                      ||||||+|.+|+++|++|++ |      .+|+||||+..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence            89999999999999999999 9      89999999863

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.87  E-value=5.8e-06  Score=87.11  Aligned_cols=37  Identities=32%  Similarity=0.505  Sum_probs=33.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ..++||||||||.+|+++|++|++ |.+|+|||+.+..
T Consensus         2 ~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            2 SNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             -CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            346899999999999999999999 9999999998764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.86  E-value=7.5e-06  Score=83.11  Aligned_cols=37  Identities=32%  Similarity=0.481  Sum_probs=33.9

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +..++||+|||+|++|+++|+.|++ |.+|+|+||.+.
T Consensus        23 ~~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           23 LLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3457999999999999999999999 999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.85  E-value=8.2e-06  Score=85.24  Aligned_cols=39  Identities=33%  Similarity=0.426  Sum_probs=34.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      .+.+||+|||+|++|+++|++|++ |.+|+|+|+.+...+
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG   48 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGG   48 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence            446899999999999999999999 999999999986543

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.85  E-value=4.5e-06  Score=87.01  Aligned_cols=34  Identities=41%  Similarity=0.696  Sum_probs=32.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+|||||||+|++|+++|.+|++ |.+|+|+||+.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            46999999999999999999999 99999999974

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.84  E-value=9e-06  Score=83.21  Aligned_cols=38  Identities=29%  Similarity=0.311  Sum_probs=34.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPY   82 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~   82 (539)
                      .+++||+|||+|++|+++|++|++ | .+|+|+|+.+...
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVG   43 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence            346899999999999999999999 9 8999999987643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.84  E-value=5e-05  Score=78.88  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=29.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      ..||+|||+|++|+++|.+|++   |.+|+|+|+.+.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~   39 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR   39 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCc
Confidence            3689999999999999999998   689999999875

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.84  E-value=6.5e-06  Score=86.00  Aligned_cols=36  Identities=28%  Similarity=0.472  Sum_probs=32.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +.+|||||||+|++|+++|.+|++ |.+|+||||.+.
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~   40 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEP   40 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEeccc
Confidence            346999999999999999999999 999999998643

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.83  E-value=9.2e-06  Score=83.43  Aligned_cols=40  Identities=33%  Similarity=0.448  Sum_probs=35.9

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYG   83 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~   83 (539)
                      |+.++||||||+|.+|+++|.+|++ |.+|+|+|+.+...+
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg   43 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG   43 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCT
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccc
Confidence            4567999999999999999999999 999999999876543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.83  E-value=7.9e-06  Score=85.04  Aligned_cols=39  Identities=26%  Similarity=0.382  Sum_probs=32.8

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      ....+||||||+|.+|+++|+.|++ |.+|+|||+.+...
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG   52 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCC
Confidence            3457899999999999999999999 99999999987643

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.83  E-value=7.2e-06  Score=85.84  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=28.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++.|||||||+|++|+++|..|.+ |...+++|+...
T Consensus        37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~   73 (501)
T 4b63_A           37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNI   73 (501)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC---
T ss_pred             CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEecccc
Confidence            456999999999999999999988 776666776653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.81  E-value=6.3e-06  Score=85.46  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=32.6

Q ss_pred             CccEEEECCCcchHHHHHhhhc-C------CeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-N------ASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G------~~VlvlEkG~~~   81 (539)
                      .+||+|||+|.+|+++|++|++ |      .+|+|||+.+..
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            5899999999999999999999 9      999999998654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.81  E-value=5.1e-05  Score=81.12  Aligned_cols=35  Identities=29%  Similarity=0.603  Sum_probs=31.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      ...||+|||+|++|+++|.+|++   |.+|+|+|+.+.
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   72 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY   72 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            35799999999999999999998   579999999875

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.79  E-value=1.2e-05  Score=80.30  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=33.2

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC-CC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG-DS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG-~~   80 (539)
                      ...+||+|||+|++|+++|++|++ |.+|+|+|+. +.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~   79 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANR   79 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            456899999999999999999999 9999999998 54

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.78  E-value=7.7e-06  Score=86.09  Aligned_cols=37  Identities=35%  Similarity=0.442  Sum_probs=33.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPY   82 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~   82 (539)
                      .++||||||||.+|++||++|++ | .+|+|||+.+...
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riG   45 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVG   45 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSB
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCC
Confidence            35899999999999999999999 9 9999999987644

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.78  E-value=1.2e-05  Score=83.79  Aligned_cols=35  Identities=40%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ..+|||||||+|++|+++|.+|++ |.+|+||||+.
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~   42 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVK   42 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            457999999999999999999999 99999999754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.77  E-value=8.6e-06  Score=85.32  Aligned_cols=33  Identities=45%  Similarity=0.738  Sum_probs=31.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||||||+|++|+++|.+|++ |.+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5899999999999999999999 99999999985

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.75  E-value=5.3e-05  Score=79.08  Aligned_cols=34  Identities=38%  Similarity=0.478  Sum_probs=31.2

Q ss_pred             CccEEEECCCcchHHHHHhhhcCCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~   80 (539)
                      .+||+|||+|++|+++|++|++-.+|+|||+++.
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~~~V~vie~~~~  141 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQYLTVALIEERGW  141 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTTCCEEEECTTSS
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCEEEEeCCCC
Confidence            5899999999999999999987689999999875

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.75  E-value=1.3e-05  Score=80.63  Aligned_cols=35  Identities=34%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .+||||||+|++|+++|+.|++ |.+|+||||.+..
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~   46 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSEL   46 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence            5899999999999999999999 9999999998753

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.74  E-value=1.5e-05  Score=83.52  Aligned_cols=39  Identities=26%  Similarity=0.234  Sum_probs=33.7

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      |.+.+||+|||+|.+|+++|++|++ |.+|+|+|+.+...
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   49 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence            3456899999999999999999999 99999999997653

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.74  E-value=1e-05  Score=83.66  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.6

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      .++||||||+|++|+++|++|++ |.+|+|||+.+...
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCC
Confidence            36899999999999999999999 99999999987643

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.74  E-value=9.6e-06  Score=84.55  Aligned_cols=37  Identities=30%  Similarity=0.511  Sum_probs=33.4

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |+.+|||||||+|++|+++|.+|++ |.+|+|+|+.+.
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~   40 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3446999999999999999999999 999999999754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.73  E-value=1.5e-05  Score=82.97  Aligned_cols=34  Identities=29%  Similarity=0.511  Sum_probs=31.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC--eEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~~~   81 (539)
                      +||+|||||.+|+++|++|++ |.  +|+|||+.+..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            699999999999999999999 98  99999998753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.73  E-value=0.00011  Score=75.86  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .||||||+|++|+++|.+|++   |.+|+|+|+.+.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   38 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQAT   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            589999999999999999998   689999999875

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.73  E-value=9.4e-05  Score=76.22  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=30.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .||||||+|++|+++|.+|++   |.+|+|+|+.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCc
Confidence            389999999999999999998   689999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.71  E-value=1.4e-05  Score=83.62  Aligned_cols=37  Identities=38%  Similarity=0.482  Sum_probs=33.6

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      +++||+|||+|.+|+++|++|++ |.+|+|||+.+...
T Consensus        38 ~~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   75 (495)
T 2vvm_A           38 GPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIG   75 (495)
T ss_dssp             CCEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSB
T ss_pred             cCCCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            34899999999999999999999 99999999987643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.69  E-value=1e-05  Score=84.22  Aligned_cols=36  Identities=28%  Similarity=0.380  Sum_probs=32.8

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+|||||||+|++|+++|.+|++ |.+|+|+|+.+.
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~   39 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            346999999999999999999999 999999999654

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.69  E-value=1.5e-05  Score=78.37  Aligned_cols=34  Identities=41%  Similarity=0.693  Sum_probs=32.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ...+||+|||+|++|+++|..|++ |.+|+|||+.
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~   40 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG   40 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC
Confidence            446999999999999999999999 9999999998

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.69  E-value=1.7e-05  Score=82.44  Aligned_cols=34  Identities=29%  Similarity=0.498  Sum_probs=32.1

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||+|||+|++|+++|.+|++ |.+|+|+|+.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            5899999999999999999999 999999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.68  E-value=1.3e-05  Score=83.00  Aligned_cols=33  Identities=27%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .+|||||||+|++|+++|.+|++ |.+|+|+|+.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~   37 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC
Confidence            36999999999999999999999 9999999994

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.65  E-value=1.9e-05  Score=81.64  Aligned_cols=34  Identities=32%  Similarity=0.524  Sum_probs=31.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +|||||||+|++|+++|.+|++ |.+|+|+|+.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4899999999999999999999 999999999864

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.62  E-value=2.3e-05  Score=75.70  Aligned_cols=34  Identities=35%  Similarity=0.670  Sum_probs=31.7

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|||+|||+|++|+++|..|++ |.+|+|+|+++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   36 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAGER   36 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence            4899999999999999999999 999999999763

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.62  E-value=1.8e-05  Score=81.12  Aligned_cols=33  Identities=27%  Similarity=0.324  Sum_probs=31.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+||+|||+|++|+++|+.|++ |.+|+||||.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            4799999999999999999999 99999999986

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.62  E-value=1.6e-05  Score=83.16  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc--CCeEEEEcCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERG   78 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG   78 (539)
                      |..+|||||||+|++|+++|++|++  |.+|+|+|+.
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~   40 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQ   40 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecc
Confidence            4457999999999999999999998  9999999953

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.62  E-value=2.7e-05  Score=80.91  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=33.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +.+|||+|||+|++|+++|.+|++ |.+|+|+|+.+.
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~   40 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   40 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            346999999999999999999999 999999999864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.61  E-value=1.8e-05  Score=82.07  Aligned_cols=33  Identities=42%  Similarity=0.628  Sum_probs=31.7

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||||||+|++|+++|.+|++ |.+|+|+|+.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            6999999999999999999999 99999999986

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.61  E-value=2.1e-05  Score=81.72  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=32.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+|||||||+|++|+++|.+|++ |.+|+|+|+.+.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~   40 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNET   40 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            46999999999999999999999 999999999864

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.61  E-value=2.6e-05  Score=69.46  Aligned_cols=32  Identities=41%  Similarity=0.719  Sum_probs=31.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |||+|||+|++|+.+|..|++ |.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999 99999999986

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.61  E-value=2.2e-05  Score=81.24  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=30.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      +|||||||+|++|+++|.+|++ |.+|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5899999999999999999999 9999999997

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.60  E-value=3.7e-05  Score=77.55  Aligned_cols=35  Identities=17%  Similarity=0.424  Sum_probs=32.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ++||+|||+|.+|+++|++|++ |.+|+|+|+.+..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            4799999999999999999999 9999999998754

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.60  E-value=3.3e-05  Score=80.50  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=33.5

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~   81 (539)
                      ...+||+|||+|++|+++|++|++ | .+|+|+|+.+..
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP   45 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence            346899999999999999999999 8 799999998754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.59  E-value=0.00017  Score=72.69  Aligned_cols=34  Identities=15%  Similarity=0.286  Sum_probs=30.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +.-|+|||+|++|+.+|..|.. +.+|+|+|+.+.
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~   43 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKY   43 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSS
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            4569999999999999999977 899999999875

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.58  E-value=2.1e-05  Score=82.07  Aligned_cols=32  Identities=25%  Similarity=0.471  Sum_probs=29.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc--CCeEEEEcC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLER   77 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEk   77 (539)
                      .+|||+|||+|++|+++|++|++  |.+|+|+|+
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   35 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL   35 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            36999999999999999999998  999999995

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.56  E-value=2.2e-05  Score=81.39  Aligned_cols=32  Identities=31%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      +|||+|||+|++|+++|.+|++ |.+|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            5899999999999999999999 9999999997

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.55  E-value=4.2e-05  Score=80.03  Aligned_cols=37  Identities=27%  Similarity=0.430  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...+||+|||+|++|+++|+.|++ |.+|+|||+.+..
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~   68 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   68 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            346899999999999999999999 9999999998754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.55  E-value=0.00016  Score=73.49  Aligned_cols=32  Identities=22%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             cEEEECCCcchHHHHHhhhc----CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ----NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~   80 (539)
                      ||||||+|++|+++|.+|++    |.+|+|||+.+.
T Consensus         3 ~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~   38 (409)
T 3h8l_A            3 KVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRF   38 (409)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSE
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCC
Confidence            79999999999999999987    689999999863

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.51  E-value=4.4e-05  Score=75.50  Aligned_cols=33  Identities=30%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +||||||+|.+|+.+|+.|++ |.+|+|+|+.+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCC
Confidence            699999999999999999999 999999999875

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.51  E-value=0.0002  Score=76.03  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=30.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .||+|||+|++|+++|.+|++   |.+|+|+|+.+.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~   37 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEY   37 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            379999999999999999998   579999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.50  E-value=0.00021  Score=73.36  Aligned_cols=31  Identities=16%  Similarity=0.521  Sum_probs=28.4

Q ss_pred             EEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      |||||+|+||+++|.+|++ |  .+|+|+|+.+.
T Consensus         3 VvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~   36 (437)
T 4eqs_A            3 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   36 (437)
T ss_dssp             EEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSC
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCC
Confidence            8999999999999999999 7  57999999864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.50  E-value=2.9e-05  Score=76.00  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ..+||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC
Confidence            35899999999999999999999 9999999975

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.46  E-value=5.3e-05  Score=73.74  Aligned_cols=31  Identities=26%  Similarity=0.454  Sum_probs=29.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLER   77 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk   77 (539)
                      +|||+|||+|++|+++|..|++ |.+|+|||+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~   32 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE   32 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            4899999999999999999999 999999986

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.46  E-value=4.1e-05  Score=75.60  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=31.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ...+||+|||+|++|+++|..|++ |.+|+|+|+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~   46 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT   46 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence            456999999999999999999999 9999999975

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.43  E-value=8.3e-05  Score=80.99  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ....+||+|||+|++|+++|+.|++ |.+|+|+|+++.
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~  425 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRD  425 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             ccccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            3457899999999999999999999 999999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.40  E-value=0.0001  Score=75.95  Aligned_cols=35  Identities=31%  Similarity=0.310  Sum_probs=32.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+||+|||||++|+++|..|++ |.+|+|+|+.+.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~  156 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDR  156 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            46899999999999999999999 999999999875

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.39  E-value=7.2e-05  Score=77.66  Aligned_cols=36  Identities=33%  Similarity=0.428  Sum_probs=32.0

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~   81 (539)
                      ..+||+|||+|++|+++|++|++ |. +|+|+|+++..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   40 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence            46899999999999999999999 98 89999998764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.35  E-value=9.7e-05  Score=74.83  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=30.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|++|+++|..|++ |.+|+|+||.+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            49999999999999999999 999999999765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.33  E-value=6.4e-05  Score=73.96  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLER   77 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEk   77 (539)
                      .+||+|||+|++|+++|+.|++ |.+|+|+|+
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~   39 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   39 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            5899999999999999999999 999999998

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.33  E-value=0.00013  Score=77.54  Aligned_cols=41  Identities=34%  Similarity=0.365  Sum_probs=36.7

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN   84 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~   84 (539)
                      +..+|||||||+|..|+++|..|++ |.+||+|||.+...++
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~   46 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGN   46 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGG
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCc
Confidence            3457999999999999999999999 9999999999876543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.33  E-value=7.8e-05  Score=77.98  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc----CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ----NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~   79 (539)
                      +|||||||+|++|+++|++|++    |.+|+|||+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            4899999999999999999987    57999999986

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.30  E-value=0.00011  Score=77.56  Aligned_cols=36  Identities=33%  Similarity=0.586  Sum_probs=32.0

Q ss_pred             CCccEEEECCCcchHHHHHhhhc----CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ----NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~~   81 (539)
                      ..+||||||+|++|+++|+.|++    |.+|+|||+....
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~~   43 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAIP   43 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCCC
Confidence            35899999999999999999987    6899999997643

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.29  E-value=0.00012  Score=73.64  Aligned_cols=61  Identities=10%  Similarity=0.107  Sum_probs=42.9

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      +...+++.|++++++++|++|..+++     . ..|+.  .+|+.  +     .++.||+|+|...+..++..+|+
T Consensus       193 l~~~l~~~gv~i~~~~~v~~i~~~~~-----~-~~v~~--~~g~~--i-----~~d~vv~a~G~~p~~~l~~~~g~  253 (384)
T 2v3a_A          193 VQAGLEGLGVRFHLGPVLASLKKAGE-----G-LEAHL--SDGEV--I-----PCDLVVSAVGLRPRTELAFAAGL  253 (384)
T ss_dssp             HHHHHHTTTCEEEESCCEEEEEEETT-----E-EEEEE--TTSCE--E-----EESEEEECSCEEECCHHHHHTTC
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCC-----E-EEEEE--CCCCE--E-----ECCEEEECcCCCcCHHHHHHCCC
Confidence            34455678999999999999987654     2 23333  35643  3     26999999998777667666665

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.25  E-value=0.00015  Score=74.31  Aligned_cols=61  Identities=13%  Similarity=0.232  Sum_probs=45.0

Q ss_pred             hhcCCCCcEEEcCcEEEEEEe--cCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          220 EYANPSGLTVLLHASVHKILF--RNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       220 ~~~~~~gv~i~~~t~V~~l~~--~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      ..+++.|++++++++|++|..  +++     ++.+|...  +|+.  +     .++.||+|+|...+..++..+|+.
T Consensus       199 ~~l~~~GV~i~~~~~v~~i~~~~~~~-----~v~~v~~~--~G~~--i-----~~D~Vv~a~G~~p~~~l~~~~gl~  261 (431)
T 1q1r_A          199 HLHREAGVDIRTGTQVCGFEMSTDQQ-----KVTAVLCE--DGTR--L-----PADLVIAGIGLIPNCELASAAGLQ  261 (431)
T ss_dssp             HHHHHHTCEEECSCCEEEEEECTTTC-----CEEEEEET--TSCE--E-----ECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHhCCeEEEeCCEEEEEEeccCCC-----cEEEEEeC--CCCE--E-----EcCEEEECCCCCcCcchhhccCCC
Confidence            355667999999999999986  333     67777654  5643  3     379999999987666777766653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.25  E-value=0.00012  Score=78.48  Aligned_cols=34  Identities=32%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      ...|||+|||+|++|+++|.+|++ |.+|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            456999999999999999999999 9999999984

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.20  E-value=0.00016  Score=72.75  Aligned_cols=32  Identities=34%  Similarity=0.540  Sum_probs=30.0

Q ss_pred             cEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      ||||||+|++|+++|+.|++   |.+|+|+||.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~   36 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDE   36 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence            89999999999999999997   799999999865

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.20  E-value=0.00022  Score=77.15  Aligned_cols=37  Identities=32%  Similarity=0.391  Sum_probs=33.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...+||+|||+|++|+++|+.|++ |.+|+|+|+.+..
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV  142 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            456899999999999999999999 9999999998754

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.18  E-value=0.0002  Score=75.74  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=31.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc----CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ----NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~   80 (539)
                      ..+||||||+|++|+++|..|++    |.+|+|||+.+.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            46899999999999999999998    589999999764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.12  E-value=0.0017  Score=65.18  Aligned_cols=33  Identities=21%  Similarity=0.447  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  179 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQ  179 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcc
Confidence            469999999999999999999 999999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.11  E-value=0.00028  Score=76.64  Aligned_cols=37  Identities=24%  Similarity=0.360  Sum_probs=33.6

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ...+||+|||+|++|+.+|..|++ |.+|+|+|+.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            346899999999999999999999 9999999998753

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.11  E-value=0.00027  Score=77.38  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...+||+|||+|++|+.+|..|++ |.+|+|+|+.+.
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~  423 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK  423 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            446899999999999999999999 999999999875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.10  E-value=0.00025  Score=70.95  Aligned_cols=33  Identities=30%  Similarity=0.580  Sum_probs=30.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .||+|||+|++|+++|.+|++ | +|+|+|+.+..
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            689999999999999999999 9 99999998753

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.07  E-value=0.00032  Score=73.11  Aligned_cols=34  Identities=12%  Similarity=0.317  Sum_probs=32.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-C---CeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-N---ASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G---~~VlvlEkG~~   80 (539)
                      ++||||||+|++|+++|.+|++ |   .+|+|+|+.+.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            5899999999999999999999 8   99999999874

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.05  E-value=0.00036  Score=77.03  Aligned_cols=38  Identities=32%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      ...+||+|||+|++|+++|+.|++ |.+|+|+|+.+...
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG  314 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCC
Confidence            446899999999999999999999 99999999987643

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.05  E-value=0.00023  Score=76.96  Aligned_cols=34  Identities=29%  Similarity=0.595  Sum_probs=31.6

Q ss_pred             CccEEEECCCcchHHHHHhhhc------CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ------NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~------G~~VlvlEkG~~   80 (539)
                      ++||+|||+|++|+++|..|++      |.+|+||||.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            6899999999999999999987      899999999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.05  E-value=0.00026  Score=79.92  Aligned_cols=34  Identities=35%  Similarity=0.516  Sum_probs=32.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|||||||+|++|+++|.+|++ |.+|+|+|+.+.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~  162 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAE  162 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            5899999999999999999999 999999999875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.04  E-value=0.0026  Score=63.17  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=42.0

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS  291 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S  291 (539)
                      +.|++++++++|++|..+++     ++.+|.+...+|+...+.     ++.||+|+|.-.+..+|...
T Consensus       214 ~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l~~~  271 (360)
T 3ab1_A          214 NGTIDVYLETEVASIEESNG-----VLTRVHLRSSDGSKWTVE-----ADRLLILIGFKSNLGPLARW  271 (360)
T ss_dssp             HTSEEEESSEEEEEEEEETT-----EEEEEEEEETTCCEEEEE-----CSEEEECCCBCCSCGGGGGS
T ss_pred             cCceEEEcCcCHHHhccCCC-----ceEEEEEEecCCCeEEEe-----CCEEEECCCCCCCHHHHHhh
Confidence            35899999999999987765     788888764466544443     79999999965444444433

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.95  E-value=0.00038  Score=70.69  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=31.9

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CC--eEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~~   80 (539)
                      .++||+|||+|++|+++|.+|++ |.  +|+|+|+.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~   43 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   43 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCC
Confidence            46899999999999999999999 86  5999999875

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=96.95  E-value=0.0031  Score=61.27  Aligned_cols=56  Identities=13%  Similarity=0.171  Sum_probs=41.2

Q ss_pred             CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-C-CCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-T-DAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~-g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      ++.|++++++++|++|..+++     ++.+|.+.+. + |+...+.     ++.||+|+|.-.++.++
T Consensus       195 ~~~gv~i~~~~~v~~i~~~~~-----~v~~v~~~~~~~~g~~~~i~-----~D~vv~a~G~~p~~~~~  252 (320)
T 1trb_A          195 ENGNIILHTNRTLEEVTGDQM-----GVTGVRLRDTQNSDNIESLD-----VAGLFVAIGHSPNTAIF  252 (320)
T ss_dssp             HTSSEEEECSCEEEEEEECSS-----SEEEEEEECCTTCCCCEEEE-----CSEEEECSCEEESCGGG
T ss_pred             ccCCeEEEcCceeEEEEcCCC-----ceEEEEEEeccCCCceEEEE-----cCEEEEEeCCCCChHHh
Confidence            357899999999999987665     7888988752 2 5444443     79999999976555443

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.93  E-value=0.00038  Score=71.76  Aligned_cols=33  Identities=27%  Similarity=0.273  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      +||||||+|++|+++|.+|++   |.+|+|+|+.+.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            589999999999999999998   789999999874

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.91  E-value=0.00041  Score=72.30  Aligned_cols=61  Identities=15%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             hhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          219 LEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       219 l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      ....++.|+++++++.|++|..+++     ++ .|+.  .+|+.  +     .++.||+|+|...+..++..+|+.
T Consensus       233 ~~~l~~~GV~v~~~~~V~~i~~~~~-----~~-~v~l--~dG~~--i-----~aD~Vv~a~G~~pn~~l~~~~gl~  293 (493)
T 1m6i_A          233 MEKVRREGVKVMPNAIVQSVGVSSG-----KL-LIKL--KDGRK--V-----ETDHIVAAVGLEPNVELAKTGGLE  293 (493)
T ss_dssp             HHHHHTTTCEEECSCCEEEEEEETT-----EE-EEEE--TTSCE--E-----EESEEEECCCEEECCTTHHHHTCC
T ss_pred             HHHHHhcCCEEEeCCEEEEEEecCC-----eE-EEEE--CCCCE--E-----ECCEEEECCCCCccHHHHHHcCCc
Confidence            3455678999999999999986544     33 4443  35643  3     369999999987776677666653

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=96.90  E-value=0.004  Score=60.19  Aligned_cols=54  Identities=20%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      .|++++++++|++|..+++     ++.+|++.+ .+|+...+.     ++.||+|+|...++.+|
T Consensus       193 ~gv~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l  247 (310)
T 1fl2_A          193 KNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHNIE-----LAGIFVQIGLLPNTNWL  247 (310)
T ss_dssp             TTEEEESSEEEEEEEESSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             CCeEEecCCceEEEEcCCC-----cEEEEEEEECCCCcEEEEE-----cCEEEEeeCCccCchHH
Confidence            5899999999999986654     788998876 246544553     79999999976555444

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.88  E-value=0.0005  Score=70.73  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=31.7

Q ss_pred             CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~~   81 (539)
                      .+||||||+|++|+++|.+|++   |.+|+|+|+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            4799999999999999999998   5799999999854

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.77  E-value=0.003  Score=65.17  Aligned_cols=33  Identities=33%  Similarity=0.478  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  203 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPE  203 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence            469999999999999999999 999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.75  E-value=0.00063  Score=77.30  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~   80 (539)
                      ..+||+|||||++|+++|..|++ |. +|+|+|+.+.
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY  222 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            35899999999999999999999 98 7999999764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.73  E-value=0.00078  Score=69.44  Aligned_cols=36  Identities=31%  Similarity=0.346  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~   81 (539)
                      ..+||+|||+|++|+.+|..|++ |  .+|+|+|+.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            35899999999999999999999 8  999999998764

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.70  E-value=0.0097  Score=57.45  Aligned_cols=56  Identities=13%  Similarity=0.055  Sum_probs=41.2

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM  289 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl  289 (539)
                      +.|+++++++.|++|..+++     ++.+|.+.+ .+|+...+.     ++.||+|+|...+..+|.
T Consensus       191 ~~gv~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~l~  247 (311)
T 2q0l_A          191 NDKIEFLTPYVVEEIKGDAS-----GVSSLSIKNTATNEKRELV-----VPGFFIFVGYDVNNAVLK  247 (311)
T ss_dssp             CTTEEEETTEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECSCEEECCGGGB
T ss_pred             CCCeEEEeCCEEEEEECCCC-----cEeEEEEEecCCCceEEEe-----cCEEEEEecCccChhhhh
Confidence            36899999999999987655     777888874 256544453     799999999765555543

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.65  E-value=0.0012  Score=67.69  Aligned_cols=35  Identities=26%  Similarity=0.436  Sum_probs=31.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc----CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ----NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~~   81 (539)
                      ..||||||+|++|+++|..|++    |.+|+|||+.+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            3689999999999999999987    6899999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.57  E-value=0.001  Score=68.54  Aligned_cols=35  Identities=31%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc--------CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ--------NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~--------G~~VlvlEkG~~~   81 (539)
                      .+||+|||+|++|+.+|..|++        |.+|+|+|+.+..
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            5899999999999999999987        7899999998754

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.51  E-value=0.0045  Score=62.76  Aligned_cols=56  Identities=18%  Similarity=0.146  Sum_probs=41.6

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCC
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG  294 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig  294 (539)
                      +.|+++++++.|++|..++      ++.+|+..  +|+.  +     .++.||+|+|...+..++..+|+.
T Consensus       197 ~~GV~i~~~~~v~~i~~~~------~~~~v~~~--dg~~--i-----~aD~Vv~a~G~~p~~~l~~~~gl~  252 (410)
T 3ef6_A          197 ELGVQVELGTGVVGFSGEG------QLEQVMAS--DGRS--F-----VADSALICVGAEPADQLARQAGLA  252 (410)
T ss_dssp             HHTCEEECSCCEEEEECSS------SCCEEEET--TSCE--E-----ECSEEEECSCEEECCHHHHHTTCC
T ss_pred             HCCCEEEeCCEEEEEeccC------cEEEEEEC--CCCE--E-----EcCEEEEeeCCeecHHHHHhCCCc
Confidence            4688999999999987543      45566654  5653  3     379999999988877787777664

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.45  E-value=0.021  Score=58.22  Aligned_cols=33  Identities=36%  Similarity=0.532  Sum_probs=30.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|..|+-+|..|++ |.+|.++|+.+.
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~  183 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR  183 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            369999999999999999999 999999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.42  E-value=0.0014  Score=66.50  Aligned_cols=34  Identities=21%  Similarity=0.299  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCe--EEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NAS--VLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~--VlvlEkG~~~   81 (539)
                      .||+|||+|++|+++|..|++ |.+  |+|+|+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC
Confidence            489999999999999999999 865  9999998753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.40  E-value=0.027  Score=57.83  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      .-.|+|||+|..|+-+|..|++   +.+|.++++.+.
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            3579999999999999999988   579999999875

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.40  E-value=0.0059  Score=63.19  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  217 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ  217 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            469999999999999999999 999999999874

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.32  E-value=0.019  Score=58.96  Aligned_cols=33  Identities=36%  Similarity=0.543  Sum_probs=30.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|.+|+-+|..|++ |.+|.|+|+++.
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~  201 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR  201 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            469999999999999999999 999999999864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=96.29  E-value=0.0023  Score=66.74  Aligned_cols=35  Identities=9%  Similarity=0.214  Sum_probs=31.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++..|||||+|+||+.+|.+|++ +.+|+|||+.+.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            34679999999999999999999 999999999875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.29  E-value=0.0017  Score=69.93  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=31.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc-C--------CeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-N--------ASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G--------~~VlvlEkG~   79 (539)
                      ..+|+|||+|++|+++|++|++ |        .+|+|+|+.+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            4789999999999999999999 8        9999999987

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.28  E-value=0.008  Score=61.76  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  204 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE  204 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            479999999999999999999 999999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.25  E-value=0.017  Score=60.45  Aligned_cols=54  Identities=20%  Similarity=0.304  Sum_probs=41.1

Q ss_pred             CCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          225 SGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       225 ~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      .|+++++++.|++|..+++     ++.+|.+.+ .+|+...+.     ++.||+|+|...+..+|
T Consensus       404 ~gV~v~~~~~v~~i~~~~~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~pn~~~l  458 (521)
T 1hyu_A          404 KNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHSVA-----LAGIFVQIGLLPNTHWL  458 (521)
T ss_dssp             TTEEEECSEEEEEEEECSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECCCEEESCGGG
T ss_pred             CCcEEEeCCEEEEEEcCCC-----cEEEEEEEeCCCCceEEEE-----cCEEEECcCCCCCchHH
Confidence            5899999999999986654     888999886 346555554     79999999976554443

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.21  E-value=0.014  Score=60.61  Aligned_cols=33  Identities=30%  Similarity=0.403  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  208 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGS  208 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence            369999999999999999999 999999999874

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.19  E-value=0.023  Score=55.47  Aligned_cols=33  Identities=21%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            369999999999999999999 999999999763

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.16  E-value=0.0026  Score=64.20  Aligned_cols=32  Identities=31%  Similarity=0.557  Sum_probs=28.8

Q ss_pred             EEEECCCcchHHHHHhhhc-C--CeEEEEcCCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDSP   81 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~~   81 (539)
                      |||||+|+||+++|.+|++ +  .+|+|||+.+..
T Consensus         5 VvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~   39 (401)
T 3vrd_B            5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETY   39 (401)
T ss_dssp             EEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSE
T ss_pred             EEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCC
Confidence            9999999999999999988 5  699999998753

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=96.13  E-value=0.03  Score=54.32  Aligned_cols=53  Identities=13%  Similarity=0.201  Sum_probs=39.0

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcccHHH
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGSPQL  287 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~sp~l  287 (539)
                      +.|++++++++|++|..+ +     ++.+|.+.+ .+|+...+.     ++.||+|+|.-.+..+
T Consensus       200 ~~gv~i~~~~~v~~i~~~-~-----~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~  253 (325)
T 2q7v_A          200 NPKMKFIWDTAVEEIQGA-D-----SVSGVKLRNLKTGEVSELA-----TDGVFIFIGHVPNTAF  253 (325)
T ss_dssp             CTTEEEECSEEEEEEEES-S-----SEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGG
T ss_pred             cCCceEecCCceEEEccC-C-----cEEEEEEEECCCCcEEEEE-----cCEEEEccCCCCChHH
Confidence            358999999999999864 3     678888875 256544454     7999999996554444

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=96.12  E-value=0.035  Score=53.99  Aligned_cols=57  Identities=14%  Similarity=0.153  Sum_probs=40.8

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      +.|++++++++|++|..++++   .++.+|.+.+. +|+...+.     ++.||+|+|.-.+..++
T Consensus       207 ~~gv~i~~~~~v~~i~~~~~~---~~v~~v~~~~~~~g~~~~i~-----~D~vi~a~G~~p~~~~~  264 (333)
T 1vdc_A          207 NPKIDVIWNSSVVEAYGDGER---DVLGGLKVKNVVTGDVSDLK-----VSGLFFAIGHEPATKFL  264 (333)
T ss_dssp             CTTEEEECSEEEEEEEESSSS---SSEEEEEEEETTTCCEEEEE-----CSEEEECSCEEESCGGG
T ss_pred             CCCeeEecCCceEEEeCCCCc---cceeeEEEEecCCCceEEEe-----cCEEEEEeCCccchHHh
Confidence            568999999999999865431   25777888753 46544443     79999999976555443

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.10  E-value=0.015  Score=60.04  Aligned_cols=33  Identities=30%  Similarity=0.476  Sum_probs=30.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  208 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR  208 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc
Confidence            369999999999999999999 999999999864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.02  E-value=0.019  Score=59.65  Aligned_cols=33  Identities=33%  Similarity=0.501  Sum_probs=29.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  232 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDT  232 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecccc
Confidence            369999999999999999999 999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.98  E-value=0.0088  Score=61.95  Aligned_cols=33  Identities=33%  Similarity=0.618  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -+++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            579999999999999999999 999999999863

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.0092  Score=61.75  Aligned_cols=32  Identities=28%  Similarity=0.523  Sum_probs=29.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHGLGSETHLVIRGET  219 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc
Confidence            59999999999999999999 999999999864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.90  E-value=0.02  Score=58.95  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFGSEVTVVALEDR  200 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            69999999999999999999 999999999864

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.71  E-value=0.094  Score=53.93  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=40.1

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      +.|++++++++|++|..+++     ++. |...  +|+.  +     .++.||+|+|...+..++..+|+
T Consensus       214 ~~GV~i~~~~~v~~i~~~~~-----~v~-v~~~--~g~~--i-----~aD~Vv~a~G~~p~~~l~~~~gl  268 (472)
T 3iwa_A          214 KNDVVVHTGEKVVRLEGENG-----KVA-RVIT--DKRT--L-----DADLVILAAGVSPNTQLARDAGL  268 (472)
T ss_dssp             HTTCEEECSCCEEEEEESSS-----BEE-EEEE--SSCE--E-----ECSEEEECSCEEECCHHHHHHTC
T ss_pred             hcCCEEEeCCEEEEEEccCC-----eEE-EEEe--CCCE--E-----EcCEEEECCCCCcCHHHHHhCCc
Confidence            46899999999999987554     555 4444  5643  3     37999999998777667666665

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.70  E-value=0.05  Score=56.08  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  212 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGH  212 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCc
Confidence            369999999999999999999 999999999864

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=95.60  E-value=0.0061  Score=62.18  Aligned_cols=57  Identities=14%  Similarity=0.212  Sum_probs=40.7

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      ..++.|+++++++.|+++.  ++        ++.+.+.+|...++.     ++.||+++|.-. +.++..++.
T Consensus       209 ~l~~~GV~~~~~~~v~~v~--~~--------~~~~~~~~g~~~~i~-----~d~vi~~~G~~~-~~~~~~~~~  265 (430)
T 3hyw_A          209 LFAERNIDWIANVAVKAIE--PD--------KVIYEDLNGNTHEVP-----AKFTMFMPSFQG-PEVVASAGD  265 (430)
T ss_dssp             HHHHTTCEEECSCEEEEEC--SS--------EEEEECTTSCEEEEE-----CSEEEEECEEEC-CHHHHTTCT
T ss_pred             HHHhCCeEEEeCceEEEEe--CC--------ceEEEeeCCCceEee-----cceEEEeccCCC-chHHHhccc
Confidence            5567899999999999974  33        345566567665664     899999999654 456666653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=95.58  E-value=0.018  Score=59.88  Aligned_cols=33  Identities=21%  Similarity=0.455  Sum_probs=28.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  216 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH  216 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            368999999999999999998 999999998764

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.53  E-value=0.045  Score=56.33  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  211 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE  211 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            469999999999999999999 999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=95.47  E-value=0.1  Score=53.76  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  214 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK  214 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            369999999999999999999 999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.41  E-value=0.039  Score=53.53  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++++++.
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            369999999999999999999 999999998753

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.35  E-value=0.062  Score=56.69  Aligned_cols=32  Identities=34%  Similarity=0.501  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|..|+-+|..|++ |.+|.++|+.+.
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQ  185 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            69999999999999999999 999999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.29  E-value=0.022  Score=58.92  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=29.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  225 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDL  225 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCc
Confidence            369999999999999999999 999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.18  E-value=0.1  Score=55.36  Aligned_cols=32  Identities=31%  Similarity=0.519  Sum_probs=29.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  221 (588)
T 3ics_A          189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQ  221 (588)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence            69999999999999999999 999999999864

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=94.91  E-value=0.079  Score=54.19  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  181 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN  181 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCc
Confidence            359999999999999999999 999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=94.87  E-value=0.12  Score=53.39  Aligned_cols=55  Identities=15%  Similarity=0.184  Sum_probs=37.5

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCC-CCeEEEEeccCCCCeEEEcCCCcccHHHH
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDAT-DAEHIAYLRNGPKNEIIVSAGALGSPQLL  288 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~-g~~~~~~~~~~~a~~VVlAaG~~~sp~lL  288 (539)
                      +.|+++++++.|++|..++++    ++ .|.+.+.. ++...+.     ++.||+|+|.-.+..+|
T Consensus       239 ~~Gv~i~~~~~v~~i~~~~~~----~~-~v~~~~~~~~~~~~~~-----~D~vi~a~G~~p~~~~l  294 (483)
T 3dgh_A          239 ERGIPFLRKTVPLSVEKQDDG----KL-LVKYKNVETGEESEDV-----YDTVLWAIGRKGLVDDL  294 (483)
T ss_dssp             HTTCCEEETEEEEEEEECTTS----CE-EEEEEETTTCCEEEEE-----ESEEEECSCEEECCGGG
T ss_pred             hCCCEEEeCCEEEEEEEcCCC----cE-EEEEecCCCCceeEEE-----cCEEEECcccccCcCcC
Confidence            468889999999999876552    33 46666532 4444443     79999999976555544

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=94.78  E-value=0.13  Score=53.24  Aligned_cols=31  Identities=16%  Similarity=0.190  Sum_probs=27.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .++|||+|..|+-+|..|++ |.+|.++|+..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            58999999999999999999 99999998753

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=94.57  E-value=0.041  Score=56.55  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=29.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~  204 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKE  204 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            469999999999999999999 999999999763

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=93.09  E-value=0.048  Score=55.75  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+++|||+|++|+-+|..|++ |.+|.|+|+++.
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  183 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR  183 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcc
Confidence            4689999999999999999999 999999999875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=92.89  E-value=0.068  Score=51.49  Aligned_cols=32  Identities=28%  Similarity=0.487  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDE  179 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecccc
Confidence            59999999999999999999 999999999875

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=92.85  E-value=0.32  Score=54.71  Aligned_cols=57  Identities=14%  Similarity=0.092  Sum_probs=41.0

Q ss_pred             CCcEEEcCcEEEEEEec-CCCCCCCeEEEEEEEe--C---CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241          225 SGLTVLLHASVHKILFR-NKGKARPVAHGVVFRD--A---TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS  291 (539)
Q Consensus       225 ~gv~i~~~t~V~~l~~~-~~~~~~~~v~gV~~~~--~---~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~S  291 (539)
                      .|+++++++.|++|..+ ++     ++.+|.+.+  .   +|+...+     .++.||+|+|.--+..++...
T Consensus       329 ~GV~v~~~~~v~~i~~~~~~-----~v~~v~~~~~~~~~~~G~~~~i-----~~D~Vv~a~G~~P~~~l~~~~  391 (965)
T 2gag_A          329 DGVQVISGSVVVDTEADENG-----ELSAIVVAELDEARELGGTQRF-----EADVLAVAGGFNPVVHLHSQR  391 (965)
T ss_dssp             TTCCEEETEEEEEEEECTTS-----CEEEEEEEEECTTCCEEEEEEE-----ECSEEEEECCEEECCHHHHHT
T ss_pred             CCeEEEeCCEeEEEeccCCC-----CEEEEEEEeccccCCCCceEEE-----EcCEEEECCCcCcChHHHHhC
Confidence            57889999999999764 33     788888875  2   2433444     379999999987776776544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.52  E-value=0.088  Score=44.14  Aligned_cols=32  Identities=19%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      =.|+|||.|..|..+|..|.+ |.+|+++|+.+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            359999999999999999999 99999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.46  E-value=0.074  Score=45.48  Aligned_cols=32  Identities=22%  Similarity=0.406  Sum_probs=29.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -.|+|||+|..|..+|..|.+ |.+|+++++.+
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            359999999999999999999 99999999865

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=92.41  E-value=0.3  Score=52.88  Aligned_cols=32  Identities=22%  Similarity=0.203  Sum_probs=29.5

Q ss_pred             cEEEEC--CCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIG--GGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVG--sG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||  +|..|+-+|..|++ |.+|.++|+.+.
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~  559 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQ  559 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             EEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccc
Confidence            599999  99999999999999 999999998764

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=92.41  E-value=0.074  Score=53.18  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=31.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .|+|||+|..|+-+|..|++ |.+|.|+|+.+..
T Consensus       148 ~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          148 KAFIIGGGILGIELAQAIIDSGTPASIGIILEYP  181 (385)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCcc
Confidence            69999999999999999999 9999999999764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.78  E-value=0.096  Score=53.68  Aligned_cols=33  Identities=27%  Similarity=0.491  Sum_probs=30.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  205 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER  205 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence            369999999999999999999 999999999875

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.75  E-value=0.093  Score=43.89  Aligned_cols=31  Identities=35%  Similarity=0.640  Sum_probs=29.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .++|+|+|..|..+|..|.+ |.+|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            49999999999999999999 99999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=91.65  E-value=0.12  Score=49.70  Aligned_cols=33  Identities=33%  Similarity=0.556  Sum_probs=30.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+...
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            369999999999999999999 999999999764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.37  E-value=0.12  Score=42.97  Aligned_cols=31  Identities=32%  Similarity=0.500  Sum_probs=28.6

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|+|||+|..|..+|..|.+ |.+|+++++.+
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            59999999999999999999 99999999854

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.07  E-value=0.11  Score=51.45  Aligned_cols=33  Identities=39%  Similarity=0.604  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  177 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM  177 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCe
Confidence            369999999999999999999 999999999875

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.62  E-value=0.14  Score=43.59  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .++|+|+|..|..+|..|.+ |.+|+++|+.+
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999 99999999863

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=90.15  E-value=0.16  Score=51.76  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  201 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA  201 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence            369999999999999999999 999999999875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.49  E-value=0.16  Score=40.61  Aligned_cols=31  Identities=29%  Similarity=0.370  Sum_probs=28.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-C-CeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~   79 (539)
                      .|+|+|+|..|..+|..|.+ | .+|.++++.+
T Consensus         7 ~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            7 NICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            49999999999999999999 8 8999999864

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=89.19  E-value=0.21  Score=50.27  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  179 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR  179 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            469999999999999999999 999999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=88.80  E-value=0.19  Score=41.77  Aligned_cols=31  Identities=26%  Similarity=0.464  Sum_probs=28.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|+|+|+|..|..+|..|.+ |.+|.++++.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            49999999999999999999 99999999864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=88.64  E-value=0.24  Score=48.77  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=28.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~  200 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNGSDIALYTSTTG  200 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             EEEEECCCcCHHHHHHHHHhcCCeEEEEecCCC
Confidence            69999999999999999999 999999999875

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=88.52  E-value=0.25  Score=51.01  Aligned_cols=33  Identities=27%  Similarity=0.469  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  228 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDT  228 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccc
Confidence            369999999999999999999 999999999875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=88.41  E-value=0.26  Score=50.71  Aligned_cols=33  Identities=24%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~  219 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG  219 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence            469999999999999999999 999999999875

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=88.30  E-value=0.28  Score=49.96  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCe-EEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NAS-VLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~-VlvlEkG~~   80 (539)
                      -.|+|||+|.+|+=+|..|++ |.+ |.|+++++.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCC
Confidence            369999999999999999999 988 999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=87.96  E-value=0.32  Score=49.85  Aligned_cols=32  Identities=9%  Similarity=0.147  Sum_probs=30.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|+|||+|.+|+=+|..|++ |.+|.++++.+.
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~  231 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTA  231 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             EEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCC
Confidence            59999999999999999999 999999998764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=87.90  E-value=0.35  Score=46.34  Aligned_cols=31  Identities=29%  Similarity=0.549  Sum_probs=28.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -|.|||+|..|...|..|++ |.+|+++++.+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            39999999999999999999 99999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=87.86  E-value=0.34  Score=50.16  Aligned_cols=33  Identities=15%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  210 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR  210 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CeEEEECChHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            369999999999999999999 999999999875

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=87.83  E-value=0.3  Score=50.00  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.|+|+++.
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR  205 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            369999999999999999999 999999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=87.57  E-value=0.32  Score=49.37  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=30.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .++|||+|..|+-+|..+++ |.+|.|+|+++..
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI  182 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCC
T ss_pred             EEEEECCccchhhhHHHHHhcCCcceeeeeeccc
Confidence            69999999999999999999 9999999998753

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=87.53  E-value=0.45  Score=48.53  Aligned_cols=62  Identities=11%  Similarity=0.111  Sum_probs=44.0

Q ss_pred             ecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEec--CCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCc
Q 009241          206 IDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFR--NKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGAL  282 (539)
Q Consensus       206 ~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~--~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~  282 (539)
                      ++.+|...-...+...++..|++|+++++|++|..+  ++     ++++|..   +|+.  +     .++.||+|+|.+
T Consensus       236 ~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~-----~~~~V~~---~g~~--~-----~ad~VV~a~~~~  299 (453)
T 2bcg_G          236 YPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTG-----KFEGVKT---KLGT--F-----KAPLVIADPTYF  299 (453)
T ss_dssp             EETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTT-----EEEEEEE---TTEE--E-----ECSCEEECGGGC
T ss_pred             eeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCC-----eEEEEEE---CCeE--E-----ECCEEEECCCcc
Confidence            345554433344555566779999999999999987  54     8888865   3532  3     379999999976

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=87.48  E-value=0.34  Score=50.67  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|..|+-+|..|++ +.+|.|+++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            469999999999999999999 999999999986

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=87.25  E-value=0.42  Score=46.07  Aligned_cols=31  Identities=29%  Similarity=0.431  Sum_probs=28.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+.|||+|..|...|..|++ |.+|.++.|.+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            48999999999999999999 99999999864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=87.25  E-value=0.34  Score=50.75  Aligned_cols=33  Identities=18%  Similarity=0.323  Sum_probs=31.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|+.|+-+|..|++ +.+|.|+++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            369999999999999999999 999999999985

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=87.14  E-value=0.33  Score=49.43  Aligned_cols=32  Identities=28%  Similarity=0.658  Sum_probs=30.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            79999999999999999999 999999999875

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=86.96  E-value=0.31  Score=47.04  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=28.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -|.|||+|..|...|..++. |++|+|+|..+
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            49999999999999999999 99999999865

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=86.69  E-value=0.4  Score=46.35  Aligned_cols=31  Identities=32%  Similarity=0.522  Sum_probs=28.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|.|||+|..|+..|..|++ |.+|.++.|.+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            48999999999999999999 99999999864

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=86.61  E-value=0.42  Score=48.67  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=30.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       151 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  183 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSNQNYNVNLIDGHER  183 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            59999999999999999999 999999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=86.39  E-value=0.37  Score=50.55  Aligned_cols=33  Identities=18%  Similarity=0.360  Sum_probs=31.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|..|+-+|..|++ +.+|.|++|.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            369999999999999999999 999999999985

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=86.32  E-value=0.47  Score=46.01  Aligned_cols=33  Identities=39%  Similarity=0.521  Sum_probs=30.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|..|+-+|..|++ |.+|.++++.+.
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~  189 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDE  189 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCc
Confidence            469999999999999999999 999999999864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.26  E-value=0.27  Score=44.56  Aligned_cols=30  Identities=30%  Similarity=0.495  Sum_probs=28.4

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |+|||+|..|..+|..|.+ |.+|+++|+.+
T Consensus         3 iiIiG~G~~G~~la~~L~~~g~~v~vid~~~   33 (218)
T 3l4b_C            3 VIIIGGETTAYYLARSMLSRKYGVVIINKDR   33 (218)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            8999999999999999999 99999999865

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=86.04  E-value=0.49  Score=42.98  Aligned_cols=30  Identities=23%  Similarity=0.403  Sum_probs=27.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      -|+|||+|..|...|..|.+ |.+|+|+...
T Consensus        33 ~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           33 SVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            59999999999999999999 9999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=85.93  E-value=0.46  Score=48.62  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  210 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLGSKVTVLARNTL  210 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCc
Confidence            369999999999999999999 999999999875

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=85.37  E-value=0.55  Score=45.09  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++++.+.
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~  189 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPK  189 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCc
Confidence            369999999999999999999 999999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=85.18  E-value=0.53  Score=39.40  Aligned_cols=31  Identities=19%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -++|||+|..|...|..|.+ |.+|.+.++.+
T Consensus        23 ~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           23 KILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             EEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            49999999999999999999 98899998864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=84.88  E-value=0.61  Score=44.96  Aligned_cols=33  Identities=36%  Similarity=0.605  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++++.+.
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~  207 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH  207 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            469999999999999999999 999999999875

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=84.85  E-value=0.55  Score=48.01  Aligned_cols=33  Identities=24%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  206 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDR  206 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCc
Confidence            369999999999999999999 999999999875

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=84.80  E-value=0.85  Score=44.91  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=30.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~   79 (539)
                      +.-|+|+|+|.+|..+|.-|.. |. +|.++++..
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4569999999999999999999 98 999999975

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=84.54  E-value=0.57  Score=46.88  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=31.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcc
Confidence            359999999999999999999 9999999998753

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=84.53  E-value=0.58  Score=48.00  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+++.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCc
Confidence            369999999999999999999 999999999875

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=84.51  E-value=0.44  Score=48.24  Aligned_cols=63  Identities=16%  Similarity=0.157  Sum_probs=44.0

Q ss_pred             eecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCc
Q 009241          205 IIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGAL  282 (539)
Q Consensus       205 ~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~  282 (539)
                      +++..|...-...+...+++.|++|+++++|++|..+++     ++++|..   +|+.  +     .++.||+|+|..
T Consensus       227 ~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~-----~v~~v~~---~g~~--~-----~ad~VV~a~~~~  289 (433)
T 1d5t_A          227 LYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENG-----KVVGVKS---EGEV--A-----RCKQLICDPSYV  289 (433)
T ss_dssp             EEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETT-----EEEEEEE---TTEE--E-----ECSEEEECGGGC
T ss_pred             EEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCC-----EEEEEEE---CCeE--E-----ECCEEEECCCCC
Confidence            344555333333355555567999999999999998775     8888763   4543  3     379999999976

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=84.41  E-value=0.61  Score=43.29  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=29.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~   80 (539)
                      ..|+|||+|..|..+|..|+. |. ++.|+++...
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   66 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence            469999999999999999999 96 8999998764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=84.28  E-value=0.61  Score=46.84  Aligned_cols=34  Identities=38%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+..
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCch
Confidence            359999999999999999999 9999999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=84.09  E-value=0.89  Score=42.81  Aligned_cols=32  Identities=16%  Similarity=0.068  Sum_probs=29.4

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ | +|.++++++.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            469999999999999999999 9 9999998864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=83.98  E-value=0.46  Score=44.67  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=28.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -|+|||+|-.|...|..|.+ |.+|+|++...
T Consensus        15 ~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           15 RILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            49999999999999999999 99999998643

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=83.86  E-value=0.54  Score=49.84  Aligned_cols=30  Identities=23%  Similarity=0.315  Sum_probs=28.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .|+|||+|..|+-+|..|++ |.+|.|+|+.
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            59999999999999999999 9999999997

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=83.64  E-value=0.48  Score=45.19  Aligned_cols=31  Identities=29%  Similarity=0.422  Sum_probs=28.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+.|||+|..|...|..|++ |.+|.++.|..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            38999999999999999999 99999999874

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=83.53  E-value=0.78  Score=41.20  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=29.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+.|||+|..|...|..|++ |.+|.++++.+.
T Consensus        21 ~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           21 EITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            49999999999999999999 999999988653

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=83.36  E-value=1.4  Score=46.63  Aligned_cols=65  Identities=12%  Similarity=0.102  Sum_probs=45.6

Q ss_pred             eeecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCC-CCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCC
Q 009241          204 TIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNK-GKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGA  281 (539)
Q Consensus       204 ~~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~-~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~  281 (539)
                      .++...|...-+..+.+.++..|.+|+++++|.+|+.+++ +    +++||.  ..+|+.  +.     ++.||..+..
T Consensus       370 ~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g----~v~gV~--~~~Ge~--i~-----A~~VVs~~~~  435 (650)
T 1vg0_A          370 FLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESR----KCKAVI--DQFGQR--II-----SKHFIIEDSY  435 (650)
T ss_dssp             EEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTC----CEEEEE--ETTSCE--EE-----CSEEEEEGGG
T ss_pred             eEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCC----eEEEEE--eCCCCE--EE-----cCEEEEChhh
Confidence            4445556444444466667778999999999999998873 3    899987  336754  33     7888875553

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=83.04  E-value=0.64  Score=45.22  Aligned_cols=30  Identities=30%  Similarity=0.544  Sum_probs=28.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      -|.|||+|..|...|..|++ |.+|.++.+.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            48999999999999999999 9999999985

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=83.00  E-value=0.76  Score=43.39  Aligned_cols=30  Identities=23%  Similarity=0.193  Sum_probs=28.3

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |.|||+|..|...|..|++ |.+|.++++.+
T Consensus         3 i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   33 (291)
T 1ks9_A            3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVP   33 (291)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEEcCc
Confidence            8899999999999999999 99999999875

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=82.80  E-value=0.78  Score=45.61  Aligned_cols=33  Identities=24%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .-|+|||+|..|..+|..|.. |.+|+++++.+.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            459999999999999999988 999999998763

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=82.49  E-value=0.68  Score=48.31  Aligned_cols=32  Identities=16%  Similarity=0.151  Sum_probs=29.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+=.|..++. |.+|.|+++...
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            59999999999999999999 999999998543

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=82.45  E-value=0.63  Score=40.66  Aligned_cols=31  Identities=19%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             cEEEECCCcchHHHHHhhhc--CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ--NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~   79 (539)
                      .|+|||.|..|..+|..|.+  |.+|+++|+.+
T Consensus        41 ~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           41 QVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            59999999999999999976  88999999865

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=82.37  E-value=0.83  Score=43.24  Aligned_cols=31  Identities=19%  Similarity=0.273  Sum_probs=28.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -|.|||+|..|...|..|++ |.+|++.++.+
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            48999999999999999999 99999999865

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=82.21  E-value=0.58  Score=47.77  Aligned_cols=30  Identities=27%  Similarity=0.589  Sum_probs=28.8

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +||+|+|-.|..+|..|++ |.+|+|+|+.+
T Consensus         6 iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            6 IIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             EEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            9999999999999999999 99999999975

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=81.91  E-value=1.2  Score=43.07  Aligned_cols=36  Identities=22%  Similarity=0.574  Sum_probs=31.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSPY   82 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~~   82 (539)
                      ..-|+|||+|..|+.+|..|+. |. ++.|++......
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~   71 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSY   71 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEecc
Confidence            3569999999999999999999 95 899999887543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=81.79  E-value=0.84  Score=44.99  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      --|+|||+|..|..+|..|.. |.+|+++++.+.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            459999999999999999999 999999998753

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=81.70  E-value=0.84  Score=47.45  Aligned_cols=33  Identities=15%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++|+.+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~  248 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP  248 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence            469999999999999999999 999999999875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=81.54  E-value=0.93  Score=43.24  Aligned_cols=34  Identities=35%  Similarity=0.404  Sum_probs=31.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      -.++|||+|..|+-+|..|++ |.+|.++++++..
T Consensus       155 ~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF  189 (323)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence            469999999999999999999 9999999998754

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=81.18  E-value=0.93  Score=43.64  Aligned_cols=31  Identities=29%  Similarity=0.467  Sum_probs=28.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CC--eEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~   79 (539)
                      -|.|||+|..|...|..|++ |.  +|.++++..
T Consensus         9 kI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            49999999999999999999 87  999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=80.64  E-value=1.3  Score=42.75  Aligned_cols=31  Identities=29%  Similarity=0.491  Sum_probs=28.6

Q ss_pred             cEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~   79 (539)
                      -|.|||+|..|...|..|++ |. +|.++++.+
T Consensus         6 kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            6 KIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            49999999999999999999 98 999999865

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=80.46  E-value=0.97  Score=43.20  Aligned_cols=31  Identities=26%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -|.|||+|..|...|..|++ |.+|.++++.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            39999999999999999999 99999998854

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=80.40  E-value=0.86  Score=47.32  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=28.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .++|||+|..|+-+|..|++ |.+|.|+|+.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            49999999999999999999 9999999985

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=80.29  E-value=0.77  Score=46.08  Aligned_cols=32  Identities=19%  Similarity=0.248  Sum_probs=29.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|||||.|-.|..+|..|.+ |.+|++||+.+.
T Consensus         6 ~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            49999999999999999999 999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	539
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	2e-59
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	3e-10
d1ju2a2	170	d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond	6e-42
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	6e-33
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	7e-05
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-30
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-04
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	1e-26
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	3e-07
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	7e-22
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	7e-06
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	5e-19
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	2e-17
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	4e-07
d1kdga2	181	d.16.1.1 (A:513-693) Flavoprotein domain of flavoc	9e-07
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-06
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	3e-06
d1cf3a2	196	d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus	4e-06
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	5e-06
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	5e-06
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	6e-06
d1gpea2	196	d.16.1.1 (A:329-524) Glucose oxidase {Penicillium	7e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	3e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	4e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	1e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	1e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	2e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	2e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-04
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	4e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	4e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	6e-04
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	7e-04
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	8e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.001
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.001
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.001
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.002
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.002
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.002
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.004

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  198 bits (504), Expect = 2e-59
 Identities = 142/338 (42%), Positives = 193/338 (57%), Gaps = 17/338 (5%)

Query: 21  HDFCACQKAAPNYSFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDS 80
           HDF          SF  +AT  +    YDY+++GGGT+GCPLAA+LS+   VL+LERG  
Sbjct: 7   HDF-------SYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSL 59

Query: 81  PYGNPNITNSGSFSAELA-DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP 139
           P   PN+  +  F   L  +    +P +RF+SEDG+ + R RVLGG + INAG Y RA  
Sbjct: 60  PTAYPNVLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119

Query: 140 --YYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLY 197
             Y A    WD  LVN++Y+WVE  +V++P  Q WQS  +   +E GV P +GF+ DH  
Sbjct: 120 SIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEE 179

Query: 198 GTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD 257
           GT+I G+  D    RH A +LL   N + L V +HASV KI+F N       A GV++RD
Sbjct: 180 GTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAPGLT--ATGVIYRD 237

Query: 258 ATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGM 317
           +    H A++R+  K E+IVSAG +G+PQLL+LSGVGP  +L + NI VVL  P VGQ +
Sbjct: 238 SNGTPHQAFVRS--KGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCL 295

Query: 318 SDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASG 355
               ++  F    V    +L  V G T   +      G
Sbjct: 296 VGKVLDGDF---RVTGINALRVVDGSTFPYTPASHPQG 330

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score = 59.5 bits (143), Expect = 3e-10
 Identities = 32/60 (53%), Positives = 45/60 (75%), Gaps = 5/60 (8%)

Query: 484 VGK-VVDH----DYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSERLAS 538
           VG+ +V      D++V G++ALRVVDGSTF Y+P ++PQ   +MLGRY+G++IL ER AS
Sbjct: 291 VGQCLVGKVLDGDFRVTGINALRVVDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSAS 350

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  146 bits (368), Expect = 6e-42
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 14/174 (8%)

Query: 317 MSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNF--------AGGSPSPRPY 368
           + DNP N I +  P P+E +++ V+GI+    Y    S + F           S      
Sbjct: 2   LHDNPRNFINILPPNPIEPTIVTVLGISN-DFYQCSFSSLPFTTPPFGFFPSSSYPLPNS 60

Query: 369 RGGFIFEKIIGPVSTGHLELR-TRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESK 427
                  K+ GP+S G L L+ + N   +P+V FNY+    DL  CV G+  I +++ + 
Sbjct: 61  TFAHFASKVAGPLSYGSLTLKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTD 120

Query: 428 SFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGG 481
           +   +K +++      N+        LPK      + E FCR++V + WHYHGG
Sbjct: 121 ALKPYKVEDLPGVEGFNILG----IPLPKDQTDDAAFETFCRESVASYWHYHGG 170

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  127 bits (320), Expect = 6e-33
 Identities = 74/324 (22%), Positives = 110/324 (33%), Gaps = 48/324 (14%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNA--SVLLLERG----------DSPYGNPNITNS----G 91
            DYI+ GGG  G   AA L++N   SVL++E G          +      +I  S     
Sbjct: 18  VDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHA 77

Query: 92  SFSAELADLSPTSPSQRFISEDGVVSTRARV--------------LGGGTCIN----AGF 133
             + ELA  + T+  +      G                      + G    N    A +
Sbjct: 78  YETVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAY 137

Query: 134 YTRAEPYYAR--EAGWDGRLVNESYQWVEKKVVFRPPMQRWQ-----SALRDGLVEVGVL 186
             +AE   A   +    G   N S   V   V   P            AL   + + GV 
Sbjct: 138 SLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSAVEDRGVP 197

Query: 187 PYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEY--ANPSGLTVLLHASVHKILFRNKG 244
               F     +G  +    + ++  R  AA            L VL    V K+L    G
Sbjct: 198 TKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNG 257

Query: 245 KARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNI 304
              P A GV F       H  Y ++    E++++AG+  SP +L  SG+G    L+   I
Sbjct: 258 T-TPRAVGVEFGTHKGNTHNVYAKH----EVLLAAGSAVSPTILEYSGIGMKSILEPLGI 312

Query: 305 TVVLDQPLVGQGMSDNPMNAIFVP 328
             V+D P+    M    M  +   
Sbjct: 313 DTVVDLPVGLCSMMPKEMGGVVDN 336

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 42.6 bits (99), Expect = 7e-05
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 484 VGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLG 524
           +G VVD+  +V GV  LRV+DGS       ++       + 
Sbjct: 330 MGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 370

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  120 bits (300), Expect = 3e-30
 Identities = 69/320 (21%), Positives = 122/320 (38%), Gaps = 54/320 (16%)

Query: 48  YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYGNPNITNSGSFSAELADLSPTSP 105
           YDYI+ GGG  G  +AA L++N    VL++E+G     +  I    +   ++     T+ 
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFG---TTV 81

Query: 106 SQRFISEDGVVS-----TRARVLGGGTCINAGFY----TRAEPYYAREAGWDGRLVNESY 156
            Q +++   + +        + LGG T IN   +          + +  G +G   +  +
Sbjct: 82  DQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMF 141

Query: 157 QWVEKKVVFRPPMQRWQSAL---------RDGLVEVGVL----PYNGFTYDHLYGTKIGG 203
           ++++K    R P     +A           +G V+ G      P++      +      G
Sbjct: 142 EYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTVSALG 201

Query: 204 ---------------------TIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRN 242
                                   +Q       A LL     S L +L    V K+LF+ 
Sbjct: 202 VPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQ 261

Query: 243 KGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAH 302
              + P A GV F          + +    +E++++AG+  SP +L  SG+G    L   
Sbjct: 262 -TASGPQAVGVNFGTNKAVNFDVFAK----HEVLLAAGSAISPLILEYSGIGLKSVLDQA 316

Query: 303 NITVVLDQPL-VGQGMSDNP 321
           N+T +LD P+ +   MS   
Sbjct: 317 NVTQLLDLPVGICSMMSREL 336

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 484 VGKVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILS 533
           +G VVD   KV G   LRV+DGS       ++       +   +   IL 
Sbjct: 336 LGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILD 385

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score =  108 bits (271), Expect = 1e-26
 Identities = 58/297 (19%), Positives = 91/297 (30%), Gaps = 30/297 (10%)

Query: 48  YDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYGNPNIT---------NSGSFSAEL 97
           YDYI++G G  G   A  LS+    VLLLERG         T             F    
Sbjct: 3   YDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62

Query: 98  ADLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPY-----------YAREAG 146
              S  + S  F     +      ++GGGT +N   Y                 +   A 
Sbjct: 63  LFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAP 122

Query: 147 WDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVG---VLPYNGFTYDHLYGTKIGG 203
           +  +L +            +  +++  + +   L   G       +   Y          
Sbjct: 123 YTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAF 182

Query: 204 TIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEH 263
             ++       A  L         T   +  V  ++            GV   D T   +
Sbjct: 183 DFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QILGVQTNDPTLGPN 237

Query: 264 IAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDN 320
                  PK  +I+SAGA G+ ++L  SG+GP D ++           L  Q    N
Sbjct: 238 GFIPVT-PKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWIN 293

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 442 LLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK-----VVDHDYKVLG 496
           +L  +   P +++    +  T+           I    G   +G      VVD + KV G
Sbjct: 260 ILFQSGIGPTDMIQTVQSNPTAAAALPPQN-QWINLPVGMTTIGSSPQSAVVDSNVKVFG 318

Query: 497 VDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILS 533
            + L +VD     + P  NPQ T+M        +IL+
Sbjct: 319 TNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILA 355

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 95.4 bits (236), Expect = 7e-22
 Identities = 36/332 (10%), Positives = 76/332 (22%), Gaps = 57/332 (17%)

Query: 48  YDYIVIGGGTAGCPLAASLSQN-ASVLLLERG---DSPYGNPNITNSGSFSAELADLSPT 103
           YD +++G G  GC  A  L      V + + G          +  N+  +   +      
Sbjct: 5   YDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNV 64

Query: 104 SPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQ-----W 158
              Q       V +     L   +   + F+ R      ++   +      +        
Sbjct: 65  IQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMST 124

Query: 159 VEKKVVFR-----------------------------PPMQRWQSALRDGLVEVGVLPYN 189
                  R                                Q      ++ +    VL   
Sbjct: 125 HWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLNKL 184

Query: 190 GFTYDHLYGTKIGGTIIDQNSQ-----------RHTAADLLEYANPSGLTVLLHASVHKI 238
              Y      +       + S                      A      +    +  ++
Sbjct: 185 AEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERV 244

Query: 239 LFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADH 298
           +             +   D    +          +  +++AGA+ + QLL+ SG G    
Sbjct: 245 VRNALNSE---IESLHIHDLISGDRFEI----KADVYVLTAGAVHNTQLLVNSGFGQLGR 297

Query: 299 LKAHNITVVLDQPLVGQGMSDNPMNAIFVPSP 330
               N   +L      + M  +        + 
Sbjct: 298 PNPTNPPELLPSLGSHR-MGFDEKEDNCCVNT 328

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 46.1 bits (108), Expect = 7e-06
 Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 10/87 (11%)

Query: 453 LLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVGK-------VVDHDYKVLGVDALRVVDG 505
           L+                 ++      G  ++G         V+ D +V G   L +   
Sbjct: 287 LVNSGFGQLGRPNPTNPPELL---PSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGC 343

Query: 506 STFYYSPGTNPQATVMMLGRYMGVRIL 532
                + G NP  T M L       I 
Sbjct: 344 GNIPTAYGANPTLTAMSLAIKSCEYIK 370

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 86.5 bits (213), Expect = 5e-19
 Identities = 45/348 (12%), Positives = 86/348 (24%), Gaps = 79/348 (22%)

Query: 48  YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS----------------PYGNPNITNS 90
              +VIG G  G   A  L+Q      ++E G S                P         
Sbjct: 8   VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLAD 67

Query: 91  GSFSAELA--------DLSPTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEP--- 139
            +               +             G+   + R +GGG+ +N G     +    
Sbjct: 68  KTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYF 127

Query: 140 YYAREAGWDGRLVNESYQWVEK---------KVVFRPPMQRWQSALRDGLVEVGV----- 185
                +     + N+ +                       ++    R      G      
Sbjct: 128 EEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTAFV 187

Query: 186 ---LPYNGFTYDHLYGTKIGGTIIDQNSQRH-----TAADLLEYANPSG-LTVLLHASVH 236
                +     +        G   +     +          L  A  +G LT+     V 
Sbjct: 188 PNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQAAATGKLTITTLHRVT 247

Query: 237 KILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLS----- 291
           K+            + V      +  ++   +    + +  +AG++G+ +LL+       
Sbjct: 248 KVAPATGS-----GYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMKAQGH 302

Query: 292 --------GVGPADHL----------KAHNITVVLDQPLVGQGMSDNP 321
                   G G    L            +    V+D  LV   +  NP
Sbjct: 303 LPNLSSQVGEGWGVLLNKATDNFGRLPEYPGLYVVDGSLVPGNVGVNP 350

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 82.0 bits (201), Expect = 2e-17
 Identities = 53/363 (14%), Positives = 94/363 (25%), Gaps = 71/363 (19%)

Query: 47  YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG-------------------------DS 80
           Y   +VIG G      A  L +     L+LE G                           
Sbjct: 2   YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 61

Query: 81  PYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVLGGGTCINA--------- 131
                 + +         ++ P +     ++ D +     R +GGG+ +N          
Sbjct: 62  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRS 121

Query: 132 ----------------GFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQRWQSA 175
                            ++ RA               +  +    +    +       + 
Sbjct: 122 YFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGLGTV 181

Query: 176 LRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSG-LTVLLHAS 234
               + + G +                    + + ++      L  A  +G +T+     
Sbjct: 182 FVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQ 241

Query: 235 VHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVG 294
           V  I     G     A  V  +D          +      + + AG+LGS +LL+ +   
Sbjct: 242 VKTIRQTKDGG---YALTVEQKDTDGKLLAT--KEISCRYLFLGAGSLGSTELLVRA--R 294

Query: 295 PADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGAS 354
               L   N         VG G       A      V    +L         GS I G+ 
Sbjct: 295 DTGTLPNLN-------SEVGAGWGCVLGKATDDYGRVAGYKNLYVT-----DGSLIPGSV 342

Query: 355 GVN 357
           GVN
Sbjct: 343 GVN 345

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 36 MRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYGNPNITNSG 91
          ++ A AA P      +V+G G+AG   + +  +  A+V+L+++     GN  I+  G
Sbjct: 8  IQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGG 64

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 39 ATAAKPVSYYDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYGNPNITNSG 91
          A A+ P    D +V+G G AG   A S + + A V+L+E+     GN  +   G
Sbjct: 8  ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGG 61

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 47.1 bits (111), Expect = 9e-07
 Identities = 17/164 (10%), Positives = 32/164 (19%), Gaps = 29/164 (17%)

Query: 317 MSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEK 376
            +       F  +    +       G  + G+              P             
Sbjct: 46  FAGASPKLNFWRAYSGSDGFTRYAQGTVRPGAASV-------NSSLPYNASQIFTITVYL 98

Query: 377 IIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDN 436
             G  S G + +          +T  +   P D    +Q +  +   I S          
Sbjct: 99  STGIQSRGRIGID--AALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM---- 152

Query: 437 MSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHG 480
                           + P  + T            M   H+  
Sbjct: 153 ----------------ITPDVTQTLEEYVDAYDPATMNSNHWVS 180

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSG 91
          YD IVIGGG +G   A   ++  A+VLLL++G+       I+  G
Sbjct: 3  YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGG 47

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 47  YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSP 102
           Y + I+IG G AG   AA L++   SV + + G        ++  G  +    +++P
Sbjct: 4   YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTP 60

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 13/99 (13%)

Query: 380 PVSTGHLELRTRNP-NDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMS 438
           P + G++ +  ++P     +    YF    DL            I  S +   +      
Sbjct: 106 PFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI 165

Query: 439 VETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWH 477
               L   A +            ++  ++        +H
Sbjct: 166 PGDNLAYDADL------------SAWTEYIPYHFRPNYH 192

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 48 YDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSG 91
           D ++IG G AG  LA  L+    V++L +G    G+      G
Sbjct: 8  CDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGG 51

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 39 ATAAKPVSYYDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYGN 84
          A AA      D ++IG G AG   A S     A V+LLE+   P GN
Sbjct: 15 AIAAGVKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGN 61

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.0 bits (107), Expect = 6e-06
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYG 83
          YD IV+G G   C L+  +S N   VL ++R     G
Sbjct: 7  YDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGG 43

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 11/99 (11%), Positives = 26/99 (26%), Gaps = 13/99 (13%)

Query: 380 PVSTGHLELRTRNPNDTPSVTF-NYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMS 438
           P + G + + + +P          +F    DL            +    +  ++      
Sbjct: 106 PFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL 165

Query: 439 VETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWH 477
                      P   L +++ T +    +        WH
Sbjct: 166 -----------PGYNLVQNA-TLSQWSDYVLQNFRPNWH 192

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYG 83
          YD IV+G G   C L+  LS +   VL +++ D   G
Sbjct: 6  YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG 42

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 46 SYYDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYG 83
          +++D IV+G G+ G      L++     LL++  D P+ 
Sbjct: 2  THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHT 40

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 45 VSYYDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYGNPNITNSG 91
          V Y D +VIGGG AG   A +  Q   S ++L        +      G
Sbjct: 3  VQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGG 50

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN 84
          Y+ +VIGGG  G  +A  L++ N +  L E G      
Sbjct: 5  YEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT 42

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 44 PVSYYDYIVIGGGTAGCPLAASLSQN-ASVLLLERGDSPYGNPNITNSGSFSAE 96
          PV  +D +VIG G AG   A  +SQ+  +  LL +          T S + SA+
Sbjct: 4  PVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVF-------PTRSHTVSAQ 50

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 48 YDYIVIGGGTAGCPLAASLSQNA-------SVLLLERGDSP 81
           D +++G G AG   A  L Q A        V L+E+    
Sbjct: 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITN 89
          +D IVIG G  G   A   +Q      L+E+     G   +  
Sbjct: 4  FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGG 46

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITN 89
          +D ++IGGG AG   A   +Q   +   +E+     G      
Sbjct: 6  HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVG 48

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN 84
          YDYI++G G  G   A  L + N  VL++E+ +   GN
Sbjct: 2  YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN 39

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 48 YDYIVIGGGTAGCPLAASLSQNA--SVLLLERGDSPYG 83
           D +V+G G+AG   A  +S+N    V ++E+  SP G
Sbjct: 34 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGG 71

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78
          V+ YDY+VIGGG+ G   A   ++  A   ++E  
Sbjct: 1  VASYDYLVIGGGSGGLASARRAAELGARAAVVESH 35

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 48  YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPS 106
           YD +V+GGG  G   A + +     V ++ER     G   +      S  L   +     
Sbjct: 7   YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK-TLGGVCLNVGCIPSKALLHNAAVIDE 65

Query: 107 QRFISEDGVVSTRARV 122
            R ++ +G+      +
Sbjct: 66  VRHLAANGIKYPEPEL 81

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERG 78
          YD IVIGGG+ G   A   ++ NA V L+E+ 
Sbjct: 2  YDLIVIGGGSGGMAAARRAARHNAKVALVEKS 33

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 47 YYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDSPYGNPNITNSGSFSA 95
            D  ++G G AG   A + +Q   NA + L+ +      +      GS + 
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAV 56

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79
          YDYI IGGG+ G       +       L+E  +
Sbjct: 3  YDYIAIGGGSGGIASINRAAMYGQKCALIEAKE 35

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79
           + +V+G G  G   A   +Q    V ++E+G+
Sbjct: 4  TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD 79
          YD I IGGG AG   +A L       L+++R  
Sbjct: 43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP 75

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)

Query: 46 SYYDYIVIGGGTAGCPLAASLS-QNASVLLLER-GDSPYGNPNITNSG 91
          + Y  +++G G +G   A  L+ +   V LL +  D+           
Sbjct: 1  AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPP 48

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 46 SYYDYIVIGGGTAGCPLAASLSQNA------SVLLLERGDSPY 82
          SY D +++G G AG   A  LS+         V ++++  +  
Sbjct: 6  SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGN 84
           D ++IGGG  G   A   +Q       +E+  +  G 
Sbjct: 4  NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 41

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 48 YDYIVIGGGTAGCPLAASLSQN--ASVLLLERGDSPYG 83
             ++IG G  G  LA  L      ++ +L++G     
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLNMP 39

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 46 SY-YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP 81
          SY +D I+IGGG+ G   A   ++ +  V++L+     
Sbjct: 1  SYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT 38

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 48 YDYIVIGGGTAGCPLAASLSQ-----NASVLLLERGDSPYGN 84
           D ++IGGG +GC  A   +         V L+E+       
Sbjct: 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG 63

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 23/178 (12%), Positives = 43/178 (24%), Gaps = 1/178 (0%)

Query: 48  YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPS 106
              ++IGGG  G   A    Q     +L+E         NI    S +           S
Sbjct: 6   TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQAS 65

Query: 107 QRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFR 166
           +        +S  +  L  G  +               A      V   + W +     +
Sbjct: 66  RFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQ 125

Query: 167 PPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANP 224
             +   +      L+  G             G  +    +  N       +  + +  
Sbjct: 126 VEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMH 183

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (85), Expect = 0.004
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 9/104 (8%)

Query: 48  YDYIVIGGGTAGCPLAASLSQN---ASVLLLERGDSPYGNPNITNSGSFSAELADLSPTS 104
            D I++G G++G   A  +++N     V ++E   +P G   +     FSA +       
Sbjct: 51  SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQL-FSAMVMRKPA-- 107

Query: 105 PSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAGWD 148
                  ++  +              A F +       +     
Sbjct: 108 ---HLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVK 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	539
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	100.0
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	100.0
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.78
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.75
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.75
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.59
d1ju2a2	170	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.59
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.56
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.56
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.52
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.51
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.5
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.5
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.45
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.4
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.36
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.32
d1cf3a2	196	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.3
d1gpea2	196	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.3
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.29
d1kdga2	181	Flavoprotein domain of flavocytochrome cellobiose	99.23
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.12
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.06
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.87
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.73
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.67
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.61
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.59
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.59
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.59
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.54
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.53
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.52
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.51
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.48
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.48
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.44
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.44
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.41
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.37
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.3
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.26
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.26
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.24
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.22
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.21
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.21
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.14
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.13
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.11
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.11
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.04
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.01
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.01
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.95
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.89
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.88
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.86
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.86
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.85
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.83
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.8
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.8
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.77
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.75
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.75
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.74
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.64
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.62
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.6
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.45
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.44
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.39
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.39
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.22
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.88
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.8
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.74
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.7
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.63
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.62
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	96.52
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.38
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.2
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	95.98
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.98
d2f5va2	198	Pyranose 2-oxidase {White-rot fungus (Peniophora s	95.91
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.83
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.4
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.14
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.13
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.95
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.33
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	94.1
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.98
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.84
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.27
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.84
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.91
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.4
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.01
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	90.67
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.37
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	90.27
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.93
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.92
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	89.53
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	89.03
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	88.86
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	88.04
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	87.89
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	87.05
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	86.53
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	85.91
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.69
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	85.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.2
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	84.8
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	84.33
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	83.95
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	82.42
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	82.35
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	82.2
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	82.08
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	81.49
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.39
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	81.19
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	81.17
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	80.84
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	80.51
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	80.22

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=3.1e-47  Score=386.82  Aligned_cols=261  Identities=26%  Similarity=0.360  Sum_probs=189.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCCCCC-CcccchhhHhhhc---CCCCCCCCccccCCCceeec
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPYGNP-NITNSGSFSAELA---DLSPTSPSQRFISEDGVVST  118 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  118 (539)
                      .++|||||||||++|+++|.||+| + .+|||||+|+...... ....+..+...+.   +|.|.+.+ ....++.+.+.
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~-~~~~~r~~~~~   93 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVE-LATNNQTALIR   93 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCC-CTTTSCCCEEC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccC-cCCCCceeeec
Confidence            346999999999999999999999 5 7999999998643322 2223333332222   34444443 34677888999


Q ss_pred             CcccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhcccccC-------------------------
Q 009241          119 RARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVFR-------------------------  166 (539)
Q Consensus       119 ~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~~-------------------------  166 (539)
                      +|+++||+|.+|++.+.|+.+.+|+.       .+|.|+++.+||.+.|......                         
T Consensus        94 ~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  173 (385)
T d1cf3a1          94 SGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGP  173 (385)
T ss_dssp             CBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEEEBC
T ss_pred             ccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCcccccccc
Confidence            99999999999999999999976643       5799999999999988653210                         


Q ss_pred             ----CCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccch-hh-hhhhcCCCCcEEEcCcEEEEEEe
Q 009241          167 ----PPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTA-AD-LLEYANPSGLTVLLHASVHKILF  240 (539)
Q Consensus       167 ----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~-~~-~l~~~~~~gv~i~~~t~V~~l~~  240 (539)
                          ....+..+.+.++++++|++...........++............+..+ .. +.+..++.|++|++++.|++|++
T Consensus       174 ~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl~i~t~~~V~rI~~  253 (385)
T d1cf3a1         174 RDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLL  253 (385)
T ss_dssp             CCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTEEEEESCEEEEEEE
T ss_pred             cccccccCHHHHHHHHHHHHcCCCCcCCcccccccccccccccccccccchhhhhhhcCchhcCCcccccCCceEEEEEE
Confidence                1123457788888999998754432222221221111111223333333 33 44577889999999999999999


Q ss_pred             cCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCc
Q 009241          241 RNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQP  311 (539)
Q Consensus       241 ~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~  311 (539)
                      ++++ ...|++||++.+.+|+.++++    +.|+||||||+|+||+|||+|||||+++|+++||+++.|+|
T Consensus       254 ~~~~-~~~ra~GV~~~~~~g~~~~v~----A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP  319 (385)
T d1cf3a1         254 SQNG-TTPRAVGVEFGTHKGNTHNVY----AKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLP  319 (385)
T ss_dssp             ECSS-SSCEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCC
T ss_pred             cCCC-ceeEEEEEEEEcCCCCEEEEE----eCCEEEEcCchhhCHHHHHhcCCCcHHHHHHCCCCeEEECC
Confidence            8764 234899999987788877776    45679999999999999999999999999999999877655

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=6.4e-47  Score=384.75  Aligned_cols=277  Identities=27%  Similarity=0.369  Sum_probs=201.1

Q ss_pred             cccccCCCCCCccEEEECCCcchHHHHHhhhc-C-CeEEEEcCCCCCCCCCCc-ccchhhHhhh---cCCCCCCCCcccc
Q 009241           37 RNATAAKPVSYYDYIVIGGGTAGCPLAASLSQ-N-ASVLLLERGDSPYGNPNI-TNSGSFSAEL---ADLSPTSPSQRFI  110 (539)
Q Consensus        37 ~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~-G-~~VlvlEkG~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~  110 (539)
                      .++++.. .++|||||||||++|+++|.||+| + .+|||||+|+........ ..+..+...+   .+|.|.+.++  .
T Consensus        15 ~~p~~~~-~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~--~   91 (391)
T d1gpea1          15 SDPSKVA-GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPL--I   91 (391)
T ss_dssp             CCGGGTT-TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCC--T
T ss_pred             CCccccc-CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeec--C
Confidence            3444333 346999999999999999999999 6 799999999864332222 2222232222   2455655554  5


Q ss_pred             CCCceeecCcccccchhhhccceeecCChhhHhc-------CCCCHHHHhhhhhhhhccccc------------------
Q 009241          111 SEDGVVSTRARVLGGGTCINAGFYTRAEPYYARE-------AGWDGRLVNESYQWVEKKVVF------------------  165 (539)
Q Consensus       111 ~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~-------~gw~~~~~~~~~~~~~~~~~~------------------  165 (539)
                      .++.+.+.+|+++||+|.+|++.+.|+.+.+++.       .+|.++++.+||++.|.....                  
T Consensus        92 ~~r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~  171 (391)
T d1gpea1          92 NNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGT  171 (391)
T ss_dssp             TSCCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCB
T ss_pred             CCcEeeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCC
Confidence            6778899999999999999999999999876643       579999999999998865321                  


Q ss_pred             -----------CCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceeeeeeeecCCCcccchhh--hhhhcCCCCcEEEcC
Q 009241          166 -----------RPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKIGGTIIDQNSQRHTAAD--LLEYANPSGLTVLLH  232 (539)
Q Consensus       166 -----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~--~l~~~~~~gv~i~~~  232 (539)
                                 .....+..+.+.++++++|+............++.........++.|.+...  +.+...+.|++|+++
T Consensus       172 ~~~~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i~t~  251 (391)
T d1gpea1         172 NGTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTG  251 (391)
T ss_dssp             SSSEEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEES
T ss_pred             CCcccccccccccccCHHHHHHHHHHHhcCCceeeccccCcccccccccceeeccccccchhhhccCccccchhhhhhcc
Confidence                       0112345677888889999875432221111111111111123444554433  445777889999999


Q ss_pred             cEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCc-
Q 009241          233 ASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQP-  311 (539)
Q Consensus       233 t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~-  311 (539)
                      +.|++|++++++ ...|++||++.+.++...+++    +.|+||||||+|+||+|||+||||++++|+++||++++++| 
T Consensus       252 a~V~rIl~~~~~-~g~ra~GV~~~~~~g~~~~v~----A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~v~dlP~  326 (391)
T d1gpea1         252 QMVGKVLFKQTA-SGPQAVGVNFGTNKAVNFDVF----AKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPV  326 (391)
T ss_dssp             CEEEEEEEEEET-TEEEEEEEEEEEETTEEEEEE----EEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCT
T ss_pred             ceeeEEeeeCCC-CCceEEeeEEecCCCeEEEEE----eCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCCEEEECCc
Confidence            999999987532 113899999987677666665    56779999999999999999999999999999999999999 


Q ss_pred             ccCccCccCC
Q 009241          312 LVGQGMSDNP  321 (539)
Q Consensus       312 ~vG~~l~dh~  321 (539)
                      .||+||+||.
T Consensus       327 Gvg~nl~dh~  336 (391)
T d1gpea1         327 GICSMMSREL  336 (391)
T ss_dssp             TCTCBSCGGG
T ss_pred             ccccccccCc
Confidence            5999999983

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=1.8e-45  Score=368.57  Aligned_cols=288  Identities=45%  Similarity=0.790  Sum_probs=228.3

Q ss_pred             ccccccccCCCCCCccEEEECCCcchHHHHHhhhcCCeEEEEcCCCCCCCCCCcccchhhHhhhc-CCCCCCCCccccCC
Q 009241           34 SFMRNATAAKPVSYYDYIVIGGGTAGCPLAASLSQNASVLLLERGDSPYGNPNITNSGSFSAELA-DLSPTSPSQRFISE  112 (539)
Q Consensus        34 ~~~~~~~~~~~~~~~DviVVGsG~aG~~aA~~La~G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  112 (539)
                      +|.-+.+..++..+|||||||||+||+++|.||||+.||||||+|+.+...+.......+...+. ++.+.+.++....+
T Consensus        13 ~~~~~~~~~~~~~~YD~IIVGsG~aG~vlA~rLae~~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (351)
T d1ju2a1          13 SFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVERFVSE   92 (351)
T ss_dssp             GGEEEGGGSCSEEEEEEEEECCSTTHHHHHHHHTTTSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEEEECT
T ss_pred             eeccCCCCccccCCccEEEECccHHHHHHHHHhcCCCCEEEEecCCCCcCccccccchhhhccCcCCCCCCCccccccCC
Confidence            34445666677778999999999999999999999889999999986544444444444444333 45556667777788


Q ss_pred             CceeecCcccccchhhhccceeecCChhhHhc--CCCCHHHHhhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCC
Q 009241          113 DGVVSTRARVLGGGTCINAGFYTRAEPYYARE--AGWDGRLVNESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNG  190 (539)
Q Consensus       113 ~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~--~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  190 (539)
                      +.+.+.+|++|||+|.+|++.++|+.+.+|+.  .+|+++++.++|++.+......+....+...+.+.+.+.|+++...
T Consensus        93 ~~~~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~~~W~~~~~~p~~~~~e~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~  172 (351)
T d1ju2a1          93 DGIDNVRGRVLGGTSIINAGVYARANTSIYSASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHG  172 (351)
T ss_dssp             TSCEEEEECBTTGGGGTSCCEECBCCTTSSTTSSSCCCHHHHHHHHHHHHHHHCBCCCCCHHHHHHHHHHHHTTCCCEEE
T ss_pred             CceeeeeeeecccccccceeeeccCCHHHHhhcccccChhHhCcceeecccccccccccccccccccchhhhhccccccc
Confidence            88999999999999999999999999988776  4689999999999999888878887778888888888888875433


Q ss_pred             CccCCCCceeeeeeeecCCCcccchhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccC
Q 009241          191 FTYDHLYGTKIGGTIIDQNSQRHTAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNG  270 (539)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~  270 (539)
                      ........+......+...+.++....|++.+.+.|++|++++.|++|++++..  ..+++||++.+.++..+++.++  
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~a~~~nl~i~~~~~V~rv~~~~~~--g~~a~gV~~~~~~g~~~~~~v~--  248 (351)
T d1ju2a1         173 FSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKIIFSNAP--GLTATGVIYRDSNGTPHQAFVR--  248 (351)
T ss_dssp             ECCBCCSEEEECEESBCTTSBBCCGGGGGGGSCTTTEEEEESCEEEEEEECCSS--SCBEEEEEEECTTSCEEEEEEE--
T ss_pred             cccccccccccccccccCCCcccccchhhccchhhhhhhhccchhhceeeeccc--cceeeEEEEEeCCCceEEEEee--
Confidence            222223333333333344556666666888788899999999999999998541  2489999999877765554443  


Q ss_pred             CCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeE
Q 009241          271 PKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAI  325 (539)
Q Consensus       271 ~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~  325 (539)
                      ++++||||||+|+||+|||+|||||+++|+++||+++.++|.||+|||||+...+
T Consensus       249 a~~eVILsAGaI~TP~LLl~SGIGp~~~L~~~gI~~~~dlPgVG~NL~DH~~~~~  303 (351)
T d1ju2a1         249 SKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLDGD  303 (351)
T ss_dssp             EEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTESCBTTTBCTT
T ss_pred             cCcEEEEeCccccCHHHHHHcCCCCHHHHHHcCCCeeccCCCcccccccCcCcce
Confidence            4578999999999999999999999999999999999999999999999986544

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=1.6e-45  Score=370.53  Aligned_cols=324  Identities=23%  Similarity=0.283  Sum_probs=232.8

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhh--c-------CCCCCCCCccccCCCcee
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAEL--A-------DLSPTSPSQRFISEDGVV  116 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~  116 (539)
                      .|||||||||++|+++|.||+| |.+|||||+|+.............+....  .       .+.+.+.++....++.+.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPFWWCKDIT   81 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCTTBCTTBS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcccCCcccc
Confidence            6999999999999999999999 99999999997543222211111111111  1       122334455566778888


Q ss_pred             ecCcccccchhhhccceeecCChhhHhc-CCCC--HHHHhhhhhhhhcccccCCC--------CchhHHHHHHHHHHcCC
Q 009241          117 STRARVLGGGTCINAGFYTRAEPYYARE-AGWD--GRLVNESYQWVEKKVVFRPP--------MQRWQSALRDGLVEVGV  185 (539)
Q Consensus       117 ~~~g~~lGG~s~~~~~~~~r~~~~~~~~-~gw~--~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~  185 (539)
                      +.+|+++||+|.+|++.+.|+.+.+|+. .+|+  |+++.+||+++|+.+.....        .......+.+.+++.++
T Consensus        82 ~~~G~~lGGsS~in~~~~~r~~~~D~~~~~gwp~~~~~l~py~~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~  161 (360)
T d1kdga1          82 VFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQSFNVVSQLLKGQGY  161 (360)
T ss_dssp             SCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCCGGGSCCHHHHHHHHHHSCCBSCCSTTSCCCSCHHHHHHHHHHHTTTC
T ss_pred             ccceeeecchhccccccccccchhhheecccccccccchhhhhhhhhccccccceecCCCcccccchhHHHHHHHHHhhc
Confidence            9999999999999999999999877755 5674  57899999999987653321        12234455666677776


Q ss_pred             CCCCCCccCCCCceeeee-eeecCCCcccchhh-hhh-hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCC---
Q 009241          186 LPYNGFTYDHLYGTKIGG-TIIDQNSQRHTAAD-LLE-YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDAT---  259 (539)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~-~~~~~~g~r~~~~~-~l~-~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~---  259 (539)
                      ................+. .+...+|.|++... |++ ...+.|++|++++.|++|+++++     +++||++.+..   
T Consensus       162 ~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d~~-----ra~GV~~~~~~~~~  236 (360)
T d1kdga1         162 NQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRNGS-----QILGVQTNDPTLGP  236 (360)
T ss_dssp             EECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEETT-----EEEEEEESCTTSSG
T ss_pred             cCCCcccCCCccccccceeeeeccccccccccchhhhhhhcccccccccCcEEEEEEEeCC-----EEEEEEEEecccCc
Confidence            422110000100011111 11124677776544 665 66778999999999999999876     99999997532   


Q ss_pred             CCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcceecCcccCccCccCCCCeEEeeCCCccchhhHH
Q 009241          260 DAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVVLDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQ  339 (539)
Q Consensus       260 g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~~~~~~vG~~l~dh~~~~~~~~~~~~~~~~~~~  339 (539)
                      +...++.    ++++||||||+|+||+|||+||||++++|+..||.     |.||.++.+|..                 
T Consensus       237 ~~~~~v~----a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~-----p~v~~~l~~~~~-----------------  290 (360)
T d1kdga1         237 NGFIPVT----PKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSN-----PTAAAALPPQNQ-----------------  290 (360)
T ss_dssp             GGEEEEE----EEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTS-----HHHHHHSCCGGG-----------------
T ss_pred             ceEEEEE----ECCEEEEechhHhChHHHHhcCCCchhhhHHhhcC-----cccccccccccc-----------------
Confidence            3334444    57889999999999999999999999999887764     345666544410                 


Q ss_pred             hhhccccchhhhccCCCCCCCCCCCCCCCcceEEEEeecCcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHH
Q 009241          340 VVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGIST  419 (539)
Q Consensus       340 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~  419 (539)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (360)
T d1kdga1         291 --------------------------------------------------------------------------------  290 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHHHHhccCCCcccccccccc-----cccCCCCcE
Q 009241          420 IEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGGCQVG-----KVVDHDYKV  494 (539)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt~~mg-----~VvD~~~rv  494 (539)
                                                                            ...|+.|+|.|+     .|||++.++
T Consensus       291 ------------------------------------------------------~~~~p~g~~~~~~~~~~~v~~~~~~~  316 (360)
T d1kdga1         291 ------------------------------------------------------WINLPVGMTTIGSSPQSAVVDSNVKV  316 (360)
T ss_dssp             ------------------------------------------------------CBCCCTTTTCBCSCTTTCSBCTTCBB
T ss_pred             ------------------------------------------------------eecccceeeecCCCCcccEECcccee
Confidence                                                                  012555555554     699999999


Q ss_pred             eccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHhh
Q 009241          495 LGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSER  535 (539)
Q Consensus       495 ~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~~  535 (539)
                      +|.+||||+|+|+||..++.||+.++|++|+++||.|++-.
T Consensus       317 ~g~~~l~~~~a~~~p~~~~~~~~~~~~~~ae~aa~~il~~~  357 (360)
T d1kdga1         317 FGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQAAAKILALA  357 (360)
T ss_dssp             TTCSSEEECSGGGCSSCCSSCSHHHHHHHHHHHHHHHHHST
T ss_pred             eccCCceEEeeecccccCCCCCCcchhHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999998743

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=100.00  E-value=8.3e-40  Score=331.28  Aligned_cols=314  Identities=18%  Similarity=0.148  Sum_probs=189.6

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccc----------hhhHhhhc----CCCC------
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNS----------GSFSAELA----DLSP------  102 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~----------~~~~~~~~----~~~~------  102 (539)
                      |+.+|||||||||++|+++|.+|++ |+||||||+|+...........          ..+.....    ....      
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV   80 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcccccchhhcccccccccccccccccccccccccccccc
Confidence            5678999999999999999999999 9999999999865432221111          01111000    0000      


Q ss_pred             -CCCC-----------------ccccCCCceeecCcccccchhhhccceeecCChhhHhcCC----------CC--HHHH
Q 009241          103 -TSPS-----------------QRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREAG----------WD--GRLV  152 (539)
Q Consensus       103 -~~~~-----------------~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~g----------w~--~~~~  152 (539)
                       ....                 +............++.+||.+.+|++.+.+..+.++....          |+  ++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T d2f5va1          81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  160 (379)
T ss_dssp             CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCCCeEeccCCCchhhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhhh
Confidence             0000                 0000011112345678999999999999998876554311          21  1334


Q ss_pred             hhhhhhhhcccccCCCCchhHHHHHHHHHHcCCCCCCCCccCCCCceee-eeeeecCCCccc--c-hhhhhhhcCCCCcE
Q 009241          153 NESYQWVEKKVVFRPPMQRWQSALRDGLVEVGVLPYNGFTYDHLYGTKI-GGTIIDQNSQRH--T-AADLLEYANPSGLT  228 (539)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~g~r~--~-~~~~l~~~~~~gv~  228 (539)
                      +++|...++.+...    .....+.+.+........ ...... ..+.. ........+.+.  . ...++..+.+.|++
T Consensus       161 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (379)
T d2f5va1         161 ESYFQTGTDQFKES----IRHNLVLNKLAEEYKGQR-DFQQIP-LAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFN  234 (379)
T ss_dssp             HHHHTEESCTTTTC----HHHHHHHHHHHHHTTTSS-CCEECC-EEEEEEETTEEEECCHHHHCCCCCEEETTEEEEEEE
T ss_pred             hhhhhHHHHHHHHH----HHhcCCCCCccccccccc-Cccccc-chhccCCCCCCCcCCCCcccchhhcchHHhcCCCCE
Confidence            44554443322211    111222222222211110 000000 00000 000000001000  0 01122344567899


Q ss_pred             EEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCCCChhhhhhCCCcce
Q 009241          229 VLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGVGPADHLKAHNITVV  307 (539)
Q Consensus       229 i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGig~~~~l~~~gi~~~  307 (539)
                      |++++.|++|++++.+   .+++||++.+. +|+.+.+.     ++.||||+|+++||+||++||++.....        
T Consensus       235 l~~~a~V~~i~~~~~~---~r~~gV~~~d~~~g~~~~i~-----a~~vilaaGa~~tp~lL~~Sg~~~~~~~--------  298 (379)
T d2f5va1         235 LFPAVACERVVRNALN---SEIESLHIHDLISGDRFEIK-----ADVYVLTAGAVHNTQLLVNSGFGQLGRP--------  298 (379)
T ss_dssp             EECSEEEEEEEECTTS---SCEEEEEEEETTTCCEEEEE-----EEEEEECSCHHHHHHHHHHTTSSCCSSC--------
T ss_pred             EecCCEEEEEEEeCCC---CEEEEEEEEECCCCEEEEEe-----ceEEEeccCccCCHHHHhhccccccccc--------
Confidence            9999999999998643   38999999875 46655554     7999999999999999999988641100        


Q ss_pred             ecCcccCccCccCCCCeEEeeCCCccchhhHHhhhccccchhhhccCCCCCCCCCCCCCCCcceEEEEeecCcCcceEEE
Q 009241          308 LDQPLVGQGMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNFAGGSPSPRPYRGGFIFEKIIGPVSTGHLE  387 (539)
Q Consensus       308 ~~~~~vG~~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~p~s~g~v~  387 (539)
                                  ++                             .   .                       .|       
T Consensus       299 ------------~~-----------------------------~---~-----------------------~~-------  304 (379)
T d2f5va1         299 ------------NP-----------------------------T---N-----------------------PP-------  304 (379)
T ss_dssp             ------------CT-----------------------------T---S-----------------------CC-------
T ss_pred             ------------cc-----------------------------c---c-----------------------Cc-------
Confidence                        00                             0   0                       00       


Q ss_pred             ecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHHH
Q 009241          388 LRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQF  467 (539)
Q Consensus       388 l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (539)
                                .                                 +.  .                               
T Consensus       305 ----------~---------------------------------~~--~-------------------------------  308 (379)
T d2f5va1         305 ----------E---------------------------------LL--P-------------------------------  308 (379)
T ss_dssp             ----------S---------------------------------SS--T-------------------------------
T ss_pred             ----------c---------------------------------cc--c-------------------------------
Confidence                      0                                 00  0                               


Q ss_pred             HHhccCCCcccccccccc--cccCCCCcEeccCCceEeecccCCCCCCcchHHHHHHHHHHHHHHHHHh
Q 009241          468 CRDTVMTIWHYHGGCQVG--KVVDHDYKVLGVDALRVVDGSTFYYSPGTNPQATVMMLGRYMGVRILSE  534 (539)
Q Consensus       468 ~~~~~~~~~H~~Gt~~mg--~VvD~~~rv~g~~nL~V~DaSv~P~~~~~nP~lti~ala~r~a~~i~~~  534 (539)
                           ..+.|.+|+|+|+  +|||+++||||++||||+|+||||+++++||++|++|||+|+||+|+++
T Consensus       309 -----~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~  372 (379)
T d2f5va1         309 -----SLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQN  372 (379)
T ss_dssp             -----TTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccceeecccCCCCCCccCCCCCcccccCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHHh
Confidence                 1135999999997  7999999999999999999999999999999999999999999999875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=100.00  E-value=2.6e-34  Score=290.04  Aligned_cols=238  Identities=16%  Similarity=0.126  Sum_probs=149.4

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCC-Ccccchh----hHhhhc---------------CCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNP-NITNSGS----FSAELA---------------DLSPT  103 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~-~~~~~~~----~~~~~~---------------~~~~~  103 (539)
                      .+.|||||||||++|+++|++|++ |++|||||+|....... .......    ......               .+.+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINKS   84 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCCB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCcc
Confidence            457999999999999999999999 99999999996432111 0000000    000000               00000


Q ss_pred             ----CCCccccCCCceeecCcccccchhhhccceeecCChhhHhcC---CCCHHHHhhhhhhhhcccccCCCC-------
Q 009241          104 ----SPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREA---GWDGRLVNESYQWVEKKVVFRPPM-------  169 (539)
Q Consensus       104 ----~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~---gw~~~~~~~~~~~~~~~~~~~~~~-------  169 (539)
                          .........+.+.+.+++++||+|.+|++.+.|+.+.+|+..   ++..+++++||+++++.+++.+..       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~~~~~~~~~~~y~~~e~~lgv~~~~~~~~~~~  164 (370)
T d3coxa1          85 IDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFEST  164 (370)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHC
T ss_pred             cccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccccCCcHHHHHHHHHHHHHhcCCccccCCcccCC
Confidence                011112234556778899999999999999999999877652   223477899999999988765432       


Q ss_pred             --chhHHHHHHHHHHcCCCCCC---C-------------CccCCCCceeeeeeeecCCCcccchhhhhh-hcCCCCcEEE
Q 009241          170 --QRWQSALRDGLVEVGVLPYN---G-------------FTYDHLYGTKIGGTIIDQNSQRHTAADLLE-YANPSGLTVL  230 (539)
Q Consensus       170 --~~~~~~~~~~~~~~g~~~~~---~-------------~~~~~~~~~~~~~~~~~~~g~r~~~~~~l~-~~~~~gv~i~  230 (539)
                        .+..+.+.+.+++.|+....   .             ..+..+.+|..+   +...+..+....|++ +.++.|++|+
T Consensus       165 ~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~k~s~~~~~L~~a~~~g~~~i~  241 (370)
T d3coxa1         165 EWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIY---GNNAGKKSLDKTYLAQAAATGKLTIT  241 (370)
T ss_dssp             GGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTT---CCSSSBCCGGGTHHHHHHHTTCEEEE
T ss_pred             CCccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccccc---cccccccChHHHHHHHHHhCCCcEEE
Confidence              23455667777777775321   0             011111111111   112233333445776 4456679999


Q ss_pred             cCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEE-EEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241          231 LHASVHKILFRNKGKARPVAHGVVFRDATDAEHI-AYLRNGPKNEIIVSAGALGSPQLLMLS  291 (539)
Q Consensus       231 ~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~-~~~~~~~a~~VVlAaG~~~sp~lLl~S  291 (539)
                      ++++|++|++++++   ...+.|+..+..++... ..+   .||.||||||+++||+|||+|
T Consensus       242 t~~~V~~I~~~~~~---~~~V~v~~~~~~~~~~~~~~~---~A~~VILaAGai~Tp~LLL~S  297 (370)
T d3coxa1         242 TLHRVTKVAPATGS---GYSVTMEQIDEQGNVVATKVV---TADRVFFAAGSVGTSKLLVSM  297 (370)
T ss_dssp             CSEEEEEEEECSSS---SEEEEEEEECTTSCEEEEEEE---EEEEEEECSHHHHHHHHHHHH
T ss_pred             ecCcEEEEEEcCCC---eEEEEEEEeCCccceeeEEEE---ECCEEEEeeCHHHhHHHHHhC
Confidence            99999999998772   13334444444444321 112   378999999999999999999

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=100.00  E-value=3e-34  Score=289.36  Aligned_cols=237  Identities=16%  Similarity=0.135  Sum_probs=150.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCc-ccc----hhhHhhhc--------------------CCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNI-TNS----GSFSAELA--------------------DLS  101 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~-~~~----~~~~~~~~--------------------~~~  101 (539)
                      +||||||||++|+++|.+|++ |+||||||+|......... ...    ........                    .+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNID   82 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBCC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcccc
Confidence            699999999999999999999 9999999999754321110 000    00000000                    000


Q ss_pred             CCCCCccccCCCceeecCcccccchhhhccceeecCChhhHhcC---CCCHHHHhhhhhhhhcccccCCCCc--------
Q 009241          102 PTSPSQRFISEDGVVSTRARVLGGGTCINAGFYTRAEPYYAREA---GWDGRLVNESYQWVEKKVVFRPPMQ--------  170 (539)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~g~~lGG~s~~~~~~~~r~~~~~~~~~---gw~~~~~~~~~~~~~~~~~~~~~~~--------  170 (539)
                      +....+.....+.+.+.+|+++||+|.+|++.+.|+.+.+|+..   .|..+++++||+++++.++..+...        
T Consensus        83 ~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~~~~~~~~l~pyy~~ae~~l~~~~~~~~~~~~~~~  162 (367)
T d1n4wa1          83 PYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEW  162 (367)
T ss_dssp             CCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTTSCHHHHHHTHHHHHHHHHTCBCCCHHHHHHCGG
T ss_pred             cccCccccccCCccceeeEEecCCCCceecceeeccChhHhhccccccCcHHHHHHHHHHHHHHhCCCCCCCCccccCCC
Confidence            11111222334566778899999999999999999999887751   2234789999999999877654322        


Q ss_pred             -hhHHHHHHHHHHcCCCCCCC---C-----------ccCCCCceeeeeeeecCCCcccchhhhhhhc-CCCCcEEEcCcE
Q 009241          171 -RWQSALRDGLVEVGVLPYNG---F-----------TYDHLYGTKIGGTIIDQNSQRHTAADLLEYA-NPSGLTVLLHAS  234 (539)
Q Consensus       171 -~~~~~~~~~~~~~g~~~~~~---~-----------~~~~~~~~~~~~~~~~~~g~r~~~~~~l~~~-~~~gv~i~~~t~  234 (539)
                       +..+.+.+.+...|+.....   .           ....+..|.. +..+...+..+....|++.+ +..|++|+++|+
T Consensus       163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~-~~~~~~~~k~s~~~~yl~~a~~~gn~~i~~~t~  241 (367)
T d1n4wa1         163 YKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATE-VIYGNNHGKQSLDKTYLAAALGTGKVTIQTLHQ  241 (367)
T ss_dssp             GHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTC-STTCCSSSBCCTTTTHHHHHHHTTSEEEEESEE
T ss_pred             ChHHHHHHHHHHHcCcccccccchhhcCCcccccccccCccccccc-ccccccccccChhHhhhHHHHhCCCeEEECCCE
Confidence             22345666777777753110   0           0000001100 01111223333334577744 455699999999


Q ss_pred             EEEEEecCCCCCCCeEEEEEEEeCCCCeEE-EEeccCCCCeEEEcCCCcccHHHHHhc
Q 009241          235 VHKILFRNKGKARPVAHGVVFRDATDAEHI-AYLRNGPKNEIIVSAGALGSPQLLMLS  291 (539)
Q Consensus       235 V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~-~~~~~~~a~~VVlAaG~~~sp~lLl~S  291 (539)
                      |++|++++++   .++++|++.+.++.... ..+   .+|.||||||+++||+|||+|
T Consensus       242 V~~I~~~~~g---~~~v~v~~~~~~~~~~~~~~i---~Ak~VVLaAGai~Tp~LLl~S  293 (367)
T d1n4wa1         242 VKTIRQTKDG---GYALTVEQKDTDGKLLATKEI---SCRYLFLGAGSLGSTELLVRA  293 (367)
T ss_dssp             EEEEEECTTS---SEEEEEEEECTTCCEEEEEEE---EEEEEEECSHHHHHHHHHHHH
T ss_pred             EEEEEEcCCC---CEEEEEEEECCCCcceeEEEE---ecCEEEEecchhcCHHHHHhC
Confidence            9999998764   37788888776554321 122   479999999999999999999

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.78  E-value=5e-19  Score=172.50  Aligned_cols=190  Identities=16%  Similarity=0.191  Sum_probs=112.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCcccc
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARVL  123 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l  123 (539)
                      .++|||||||+|++|+++|++|++ |.+|+||||++.                                          .
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~------------------------------------------~   51 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPV------------------------------------------I   51 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS------------------------------------------S
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC------------------------------------------C
Confidence            457999999999999999999999 999999999975                                          5


Q ss_pred             cchhhhccceeecCChhhHhcCC--CCHHHHhhhhhhhhcccccCCCC----chhHHHHHHHHHHcCCCCCCCCccCCCC
Q 009241          124 GGGTCINAGFYTRAEPYYAREAG--WDGRLVNESYQWVEKKVVFRPPM----QRWQSALRDGLVEVGVLPYNGFTYDHLY  197 (539)
Q Consensus       124 GG~s~~~~~~~~r~~~~~~~~~g--w~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~  197 (539)
                      ||+|.++++.+........+..+  ..++.....+........ .+..    ........+++++.|++......   ..
T Consensus        52 gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~-d~~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~---~~  127 (308)
T d1y0pa2          52 GGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN-DPALVKVLSSHSKDSVDWMTAMGADLTDVGM---MG  127 (308)
T ss_dssp             CTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHTTCCCCEEEC---CT
T ss_pred             CCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhcc-chHHHHHHHHhhhHHHHHHHHcCCCcccccc---cc
Confidence            67777776665444332222211  122221111111111000 0000    01123345667777775321100   00


Q ss_pred             ceeeeeeeecCCCcccc---hhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCe
Q 009241          198 GTKIGGTIIDQNSQRHT---AADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNE  274 (539)
Q Consensus       198 ~~~~~~~~~~~~g~r~~---~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~  274 (539)
                      +................   ...++..+.+.|++|+++++|++|+.++++    +|+||.+.+.++..+.+.     +|.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G----~V~Gv~~~~~~~~~~~i~-----Ak~  198 (308)
T d1y0pa2         128 GASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKG----TVKGILVKGMYKGYYWVK-----ADA  198 (308)
T ss_dssp             TCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTS----CEEEEEEEETTTEEEEEE-----CSE
T ss_pred             ccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhccc----ccccccccccccceeEee-----cCe
Confidence            00111111111111111   112444566789999999999999998765    999999988766665554     899


Q ss_pred             EEEcCCCcccHHHHH
Q 009241          275 IIVSAGALGSPQLLM  289 (539)
Q Consensus       275 VVlAaG~~~sp~lLl  289 (539)
                      ||||||+|....-++
T Consensus       199 VVlAtGG~~~n~~~~  213 (308)
T d1y0pa2         199 VILATGGFAKNNERV  213 (308)
T ss_dssp             EEECCCCCTTCHHHH
T ss_pred             EEEccCcccccHHHH
Confidence            999999998755544

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.75  E-value=2.5e-18  Score=168.61  Aligned_cols=189  Identities=21%  Similarity=0.185  Sum_probs=111.7

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV  122 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  122 (539)
                      ..+++||||||+|++|+++|++|++ |.+|+||||++.                                          
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~------------------------------------------   57 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI------------------------------------------   57 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS------------------------------------------
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC------------------------------------------
Confidence            4557999999999999999999999 999999999975                                          


Q ss_pred             ccchhhhccceeecCChhhHhcCC--CCHHHHhhhhhhhhcccccCCCC---c---hhHHHHHHHHHHcCCCCCCCCccC
Q 009241          123 LGGGTCINAGFYTRAEPYYAREAG--WDGRLVNESYQWVEKKVVFRPPM---Q---RWQSALRDGLVEVGVLPYNGFTYD  194 (539)
Q Consensus       123 lGG~s~~~~~~~~r~~~~~~~~~g--w~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~g~~~~~~~~~~  194 (539)
                      .||+|..+.+.+.-.........+  .+++.   +++............   .   .......+++++.|++....... 
T Consensus        58 ~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~---~~~d~~~~~~~~~d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~-  133 (322)
T d1d4ca2          58 PGGNTKLAAGGMNAAETKPQAKLGIEDKKQI---MIDDTMKGGRNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRM-  133 (322)
T ss_dssp             SCTTGGGCCSCEECSSCHHHHHTTCCCCHHH---HHHHHHHHTTTCSCHHHHHHHHHTHHHHHHHHHHTTCCCCEEECC-
T ss_pred             CCCcccccCCcccccCchhhhhcccCCCHHH---HHHHHHhccccccCHHHhhhhhhhhhhhhhhhhhhcccccccccc-
Confidence            457676666554433332222211  12222   122111111111110   0   11233456677778763211000 


Q ss_pred             CCCceeeeeeeecCCCccc---chhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCC
Q 009241          195 HLYGTKIGGTIIDQNSQRH---TAADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGP  271 (539)
Q Consensus       195 ~~~~~~~~~~~~~~~g~r~---~~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~  271 (539)
                        .+...........+...   ....+...+.+.|++|+++++|++|+.++++    +|+||.+.+.++....+     .
T Consensus       134 --~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G----~V~Gv~~~~~~~~~~~i-----~  202 (322)
T d1d4ca2         134 --GGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASG----KVTGVLVKGEYTGYYVI-----K  202 (322)
T ss_dssp             --TTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSS----CCCEEEEEETTTEEEEE-----E
T ss_pred             --cccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeecccccccccc----cccceEEEeecccEEEE-----e
Confidence              00001111111111111   1122445666789999999999999998765    99999998866655544     3


Q ss_pred             CCeEEEcCCCcccHHHHH
Q 009241          272 KNEIIVSAGALGSPQLLM  289 (539)
Q Consensus       272 a~~VVlAaG~~~sp~lLl  289 (539)
                      +|.||||||+|+...-++
T Consensus       203 Ak~VIlAtGG~~~n~~~~  220 (322)
T d1d4ca2         203 ADAVVIAAGGFAKNNERV  220 (322)
T ss_dssp             CSEEEECCCCCTTCHHHH
T ss_pred             CCeEEEcCCCcccCHHHH
Confidence            899999999998655544

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.75  E-value=3.6e-18  Score=166.98  Aligned_cols=191  Identities=16%  Similarity=0.187  Sum_probs=112.6

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCCCCCCcccchhhHhhhcCCCCCCCCccccCCCceeecCccc
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPYGNPNITNSGSFSAELADLSPTSPSQRFISEDGVVSTRARV  122 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  122 (539)
                      ..+++||||||+|++|+++|++|++ |.+|+||||++.                                          
T Consensus        16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~------------------------------------------   53 (317)
T d1qo8a2          16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPF------------------------------------------   53 (317)
T ss_dssp             CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSS------------------------------------------
T ss_pred             CCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC------------------------------------------
Confidence            3568999999999999999999999 999999999975                                          


Q ss_pred             ccchhhhccceeecCChhhHhcCCCCHHHHhhhhhhhhcccccCCCCc------hhHHHHHHHHHHcCCCCCCCCccCCC
Q 009241          123 LGGGTCINAGFYTRAEPYYAREAGWDGRLVNESYQWVEKKVVFRPPMQ------RWQSALRDGLVEVGVLPYNGFTYDHL  196 (539)
Q Consensus       123 lGG~s~~~~~~~~r~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~  196 (539)
                      .||+|..+.+.+.-.........+.. +..+.+++...+......+..      .......+++++.|+........   
T Consensus        54 ~gG~S~~a~Ggi~a~~~~~~~~~g~~-d~~~~~~~d~~~~~~~~~d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~---  129 (317)
T d1qo8a2          54 SGGNSMISAGGMNAVGTKQQTAHGVE-DKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRS---  129 (317)
T ss_dssp             SCTTGGGCCSCEECSSCHHHHHTTCC-CCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECC---
T ss_pred             CCCchhhcCCCcccccchhhhhcccC-CcHHHHHHHHHHhhccccchhHHHHHHhhhhhhhhhHHHhhhcccccccc---
Confidence            45666666655433322222222211 111112222111111111110      01223445677778764211000   


Q ss_pred             CceeeeeeeecCCCcccc---hhhhhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCC
Q 009241          197 YGTKIGGTIIDQNSQRHT---AADLLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKN  273 (539)
Q Consensus       197 ~~~~~~~~~~~~~g~r~~---~~~~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~  273 (539)
                      .+...........+....   ...+...+++.|++++++++|++|+.++++    +|+||.+.+.++..+.+.     +|
T Consensus       130 gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g----~V~Gv~~~~~~~~~~~i~-----Ak  200 (317)
T d1qo8a2         130 GGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH----SVVGAVVHGKHTGYYMIG-----AK  200 (317)
T ss_dssp             TTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS----BEEEEEEEETTTEEEEEE-----EE
T ss_pred             cCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc----cceeeEeecccceEEEEe-----cc
Confidence            000000011112222211   112444667789999999999999887764    999999998777665554     79


Q ss_pred             eEEEcCCCcccHHHHH
Q 009241          274 EIIVSAGALGSPQLLM  289 (539)
Q Consensus       274 ~VVlAaG~~~sp~lLl  289 (539)
                      .||||||+|+...-|+
T Consensus       201 ~VVlAtGG~~~n~~~~  216 (317)
T d1qo8a2         201 SVVLATGGYGMNKEMI  216 (317)
T ss_dssp             EEEECCCCCTTCHHHH
T ss_pred             ceEEeccccccCHHHH
Confidence            9999999998655544

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7.8e-15  Score=142.32  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=44.7

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      ..+..+++++.+++|++|+.+++     ++.||.+.+ .+|+.+.+.     +|.||||||+++
T Consensus       144 ~~~~~~v~i~~~~~v~~Ll~d~g-----~v~Gvv~~~~~~g~~~~~~-----AkaVILATGG~g  197 (311)
T d1kf6a2         144 SLQFPQIQRFDEHFVLDILVDDG-----HVRGLVAMNMMEGTLVQIR-----ANAVVMATGGAG  197 (311)
T ss_dssp             HTTCTTEEEEETEEEEEEEEETT-----EEEEEEEEETTTTEEEEEE-----CSCEEECCCCCG
T ss_pred             HHccCcceeEeeeEeeeeEecCC-----cceeEEEEEcCCCcEEEEE-----CCEEEEcCCCcc
Confidence            56677899999999999999886     999998876 467665554     899999999986

>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.59  E-value=2.8e-15  Score=130.06  Aligned_cols=161  Identities=30%  Similarity=0.554  Sum_probs=112.1

Q ss_pred             cCccCCCCeEEeeCCCccchhhHHhhhccccchhhhccCCCCC--------CCCCCCCCCCcceEEEEeecCcCcceEEE
Q 009241          316 GMSDNPMNAIFVPSPVPVEVSLIQVVGITQFGSYIEGASGVNF--------AGGSPSPRPYRGGFIFEKIIGPVSTGHLE  387 (539)
Q Consensus       316 ~l~dh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~p~s~g~v~  387 (539)
                      .|+|||...+++..+.|+..+..+..++...... .......+        .............++...+.+|.|||+|+
T Consensus         1 ~l~DnP~n~i~~~~~~P~~~s~~q~~G~~~~~~~-~~~p~lq~~~~p~~~~~~~~~p~~~~~~~~i~~~l~~P~SrG~v~   79 (170)
T d1ju2a2           1 FLHDNPRNFINILPPNPIEPTIVTVLGISNDFYQ-CSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLT   79 (170)
T ss_dssp             EEECCEEEEEEECCSSCCCCCCCCEEEECSSEEE-EEEEECCCSSCCBTTBSSSCCCCCSSCEEEEEEEESSCSCCEEEE
T ss_pred             CCccCCCcceecCCCCCcccchhhEEEEecCchh-hcCCCcccccCcccccccCCCCCCCCCeeEeecccCCccccceEE
Confidence            3789999999888887776666665554321100 00000000        00000011122345667788999999999


Q ss_pred             ec-CCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCCCCCCCCCCCCHHHHHH
Q 009241          388 LR-TRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMPLNLLPKHSNTSTSLEQ  466 (539)
Q Consensus       388 l~-~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (539)
                      |+ ++||.+.|+|+++|+.++.|++.+.++++.+++++++..++++...+..+.+.+..    ...+.|...++++++++
T Consensus        80 L~~S~dp~~~P~i~~nyl~~~~D~~~~v~~~~~~r~i~~~~~~~~~~~~e~~p~~~~~~----~~~p~p~~~~dde~l~~  155 (170)
T d1ju2a2          80 LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNI----LGIPLPKDQTDDAAFET  155 (170)
T ss_dssp             CSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCB----SSSCCCSCTTCHHHHHH
T ss_pred             ecCCCCcccCcccCcccccCchhHHHHHHHHHHHHHHHcChhhhhcccccccccccccc----ccCCCccCCCCHHHHHH
Confidence            96 89999999999999999999999999999999999999999887665432111110    11134456679999999


Q ss_pred             HHHhccCCCcccccc
Q 009241          467 FCRDTVMTIWHYHGG  481 (539)
Q Consensus       467 ~~~~~~~~~~H~~Gt  481 (539)
                      |+|++..|.||++|+
T Consensus       156 ~iR~~~~T~yHyhgg  170 (170)
T d1ju2a2         156 FCRESVASYWHYHGG  170 (170)
T ss_dssp             HHHHHCEECSCCEES
T ss_pred             HHHhcCEeccCCCCc
Confidence            999999999999986

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.56  E-value=4.9e-15  Score=139.14  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=44.9

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHH
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQL  287 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~l  287 (539)
                      ++..+++.|++|+++++|++|..+++     ++.+|...  +|+.  ++     ++.||+|+|+...|++
T Consensus       116 L~~~~~~~gv~i~~~~~v~~i~~~~~-----~~~~v~~~--~g~~--i~-----a~~vI~AtGg~S~p~~  171 (251)
T d2i0za1         116 LLTRLKDLGVKIRTNTPVETIEYENG-----QTKAVILQ--TGEV--LE-----TNHVVIAVGGKSVPQT  171 (251)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TCCE--EE-----CSCEEECCCCSSSGGG
T ss_pred             HHHHHHHcCCcccCCcEEEEEEEECC-----EEEEEEeC--CCCe--Ee-----cCeEEEccCCcccccc
Confidence            44566678999999999999999887     78887654  5643  33     8999999999988864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.56  E-value=1.1e-14  Score=142.90  Aligned_cols=56  Identities=14%  Similarity=0.221  Sum_probs=46.6

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      +...+++.|++|+++++|++|+.+++     ++.|+.+.+ .+|+...+.     +|.||||||+++
T Consensus       164 l~~~~~~~gv~i~~~~~~~~li~~~~-----~v~g~~~~~~~~g~~~~i~-----Ak~VvlATGG~~  220 (336)
T d2bs2a2         164 VANECLKLGVSIQDRKEAIALIHQDG-----KCYGAVVRDLVTGDIIAYV-----AKGTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHTCEEECSEEEEEEEEETT-----EEEEEEEEETTTCCEEEEE-----CSEEEECCCCCG
T ss_pred             HHHHHHhccccccceeeeeecccccc-----cccceeEEeccCCcEEEEe-----cCeEEEeccccc
Confidence            34456678999999999999999887     999998876 467776664     799999999986

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=3.3e-14  Score=137.55  Aligned_cols=58  Identities=10%  Similarity=0.175  Sum_probs=44.2

Q ss_pred             hcCCCCcEEEcCcEEEEEEecCCCC--CCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCCCcc
Q 009241          221 YANPSGLTVLLHASVHKILFRNKGK--ARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAGALG  283 (539)
Q Consensus       221 ~~~~~gv~i~~~t~V~~l~~~~~~~--~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG~~~  283 (539)
                      ..++.+++++.++++++|+.+++..  ...+|+||.+.+. +++.+.+     .+|.||||+|+++
T Consensus       147 ~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~-----~ak~VilAtGG~~  207 (305)
T d1chua2         147 ALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETC-----HAKAVVLATGGAS  207 (305)
T ss_dssp             HHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEE-----ECSEEEECCCCCG
T ss_pred             HHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEE-----eecceEEeeeccc
Confidence            4567899999999999999886421  1238999998764 4444444     4899999999985

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.51  E-value=5.4e-15  Score=140.90  Aligned_cols=37  Identities=35%  Similarity=0.569  Sum_probs=34.1

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.++|||||||||.+|+++|++|++ |.+|+||||+..
T Consensus         1 m~~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~   38 (276)
T d1ryia1           1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTM   38 (276)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4567999999999999999999999 999999999864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.50  E-value=1.4e-14  Score=136.27  Aligned_cols=37  Identities=35%  Similarity=0.555  Sum_probs=34.5

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.+.|||||||+|++|+++|+.|++ |.+|+||||++.
T Consensus         1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4567999999999999999999999 999999999975

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.50  E-value=1.3e-14  Score=138.56  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=32.8

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..|||||||+|.+|+++|++|++ |.+|+||||...
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            36999999999999999999999 999999999764

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.45  E-value=7.9e-14  Score=134.79  Aligned_cols=60  Identities=17%  Similarity=0.169  Sum_probs=47.3

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHHhcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLMLSGV  293 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl~SGi  293 (539)
                      ++..+++.|++|+++++|++|..+++     ++++|++.  +|.   ++     ++.||+|||+ +|++|+...|+
T Consensus       154 l~~~a~~~gv~i~~~~~V~~i~~~~~-----~v~~V~T~--~g~---i~-----a~~VV~aaG~-~s~~l~~~~g~  213 (305)
T d1pj5a2         154 LIKRTESAGVTYRGSTTVTGIEQSGG-----RVTGVQTA--DGV---IP-----ADIVVSCAGF-WGAKIGAMIGM  213 (305)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETT-----EEEEEEET--TEE---EE-----CSEEEECCGG-GHHHHHHTTTC
T ss_pred             HHhhhhcccccccCCceEEEEEEeCC-----EEEEEecc--cee---EE-----CCEEEEecch-hHHHHHHHcCC
Confidence            44566778999999999999999887     89998752  452   33     8999999997 57888776544

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.40  E-value=9e-13  Score=130.10  Aligned_cols=35  Identities=31%  Similarity=0.512  Sum_probs=31.6

Q ss_pred             CCccEEEECCCcchHHHHHhhh----c-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLS----Q-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La----~-G~~VlvlEkG~~   80 (539)
                      .++||||||||++|++||++||    + |++|+||||++.
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            4799999999999999999986    3 899999999875

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=1.4e-12  Score=127.26  Aligned_cols=58  Identities=12%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEe-CCCCeEEEEeccCCCCeEEEcCCCccc
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRD-ATDAEHIAYLRNGPKNEIIVSAGALGS  284 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~-~~g~~~~~~~~~~~a~~VVlAaG~~~s  284 (539)
                      +...+++.+++++.++.++.++.++++    ++.|+...+ .+|+...+.     ++.||||+|++..
T Consensus       149 L~~~~~~~~v~~~~~~~~~~l~~~~~~----~~~g~~~~~~~~g~~~~~~-----a~~vIlAtGG~~~  207 (330)
T d1neka2         149 LYQQNLKNHTTIFSEWYALDLVKNQDG----AVVGCTALCIETGEVVYFK-----ARATVLATGGAGR  207 (330)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEECTTS----CEEEEEEEETTTCCEEEEE-----ESCEEECCCCCGG
T ss_pred             HHHHHHhcCCeEEEEEEEEEeeeeccc----cceeeeeEEccCCcEEEEe-----ccEEEEcCCCccc
Confidence            344556789999999999999887664    777766554 466665554     8999999999864

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.30  E-value=2.8e-12  Score=114.36  Aligned_cols=98  Identities=13%  Similarity=0.115  Sum_probs=81.8

Q ss_pred             EEEEeecCcCcceEEEecCCCCC-CCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCC
Q 009241          372 FIFEKIIGPVSTGHLELRTRNPN-DTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMP  450 (539)
Q Consensus       372 ~~~~~~~~p~s~g~v~l~~~d~~-~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (539)
                      .+......|.|||+|+|.++||. +.|.|+++|+.++.|++.+.++++.+++++++..++++...+..           |
T Consensus        98 ~~~~~~l~P~SrG~V~l~S~dP~~d~P~I~~nyls~~~D~~~~~~~~r~~~~i~~~~~~~~~~~~e~~-----------P  166 (196)
T d1cf3a2          98 SFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFAGETI-----------P  166 (196)
T ss_dssp             EEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGTEEEEEE-----------S
T ss_pred             eeeeeecCCCcceEEEeeCCCcccCCCccCHhhcCCchHHHHHHHHHHHHHHHHHhHHHHhccccccC-----------C
Confidence            34455689999999999999997 68999999999999999999999999999999988888765432           2


Q ss_pred             CCCCCCCCCCHHHHHHHHHhccCCCcccccc
Q 009241          451 LNLLPKHSNTSTSLEQFCRDTVMTIWHYHGG  481 (539)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt  481 (539)
                      +..++ ...+++++++|+|....+.||++||
T Consensus       167 g~~~~-~d~~~~~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1cf3a2         167 GDNLA-YDADLSAWTEYIPYHFRPNYHGVGT  196 (196)
T ss_dssp             GGGSC-TTCCHHHHHHHGGGSCEECSCCBCT
T ss_pred             CcCCC-CchhHHHHHHHHHhcCeeccccCCC
Confidence            22222 2346788999999999999999998

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.30  E-value=2.6e-12  Score=114.59  Aligned_cols=99  Identities=11%  Similarity=0.092  Sum_probs=82.2

Q ss_pred             eEEEEeecCcCcceEEEecCCCCCCCC-eeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCC
Q 009241          371 GFIFEKIIGPVSTGHLELRTRNPNDTP-SVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASM  449 (539)
Q Consensus       371 ~~~~~~~~~p~s~g~v~l~~~d~~~~p-~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (539)
                      ..+...++.|.|||+|+|.++||...| .|+++|+.++.|++.+.++++.+++++++..++++...+..           
T Consensus        97 ~~~~~~~l~P~SrG~V~l~S~dP~~~pp~I~pnyl~~~~D~~~~~~~~r~~~~i~~t~~l~~~~~~e~~-----------  165 (196)
T d1gpea2          97 INFDLWDLIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGAMKEYFAGETL-----------  165 (196)
T ss_dssp             EEEEEEESSCCCCBEEEESSSCGGGTCEEEECCTTSSHHHHHHHHHHHHHHHHHHTSTTHHHHEEEEEE-----------
T ss_pred             eEEeeeccCCccceEEEeeCCCchhcccccchhhcCCchHHHHHHHHHHHHHHHHhhHHHHhhcccccC-----------
Confidence            345556789999999999999998755 99999999999999999999999999999988887654422           


Q ss_pred             CCCCCCCCCCCHHHHHHHHHhccCCCcccccc
Q 009241          450 PLNLLPKHSNTSTSLEQFCRDTVMTIWHYHGG  481 (539)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt  481 (539)
                      |+..+ ....+++++++|+|....+.||++||
T Consensus       166 Pg~~~-~~~~sde~~~~~ir~~~~t~~Hp~GT  196 (196)
T d1gpea2         166 PGYNL-VQNATLSQWSDYVLQNFRPNWHAVSS  196 (196)
T ss_dssp             SGGGS-CTTCCHHHHHHHHHHSCEECSCCBCT
T ss_pred             CCccc-CCCCCHHHHHHHHHhcCeecccCCCC
Confidence            22222 12347899999999999999999998

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=4.7e-12  Score=118.35  Aligned_cols=39  Identities=33%  Similarity=0.457  Sum_probs=36.3

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      |+++|||||||||.+|+++|.+|++ |.+|+||||.+...
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            6789999999999999999999999 99999999987653

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.23  E-value=1.6e-11  Score=108.32  Aligned_cols=88  Identities=16%  Similarity=0.120  Sum_probs=72.1

Q ss_pred             EEEEeec-CcCcceEEEecCCCCCCCCeeecCCCCChHHHHHHHHHHHHHHHHHccccccccccccchhHHhhhhccCCC
Q 009241          372 FIFEKII-GPVSTGHLELRTRNPNDTPSVTFNYFKEPEDLQRCVQGISTIEKIIESKSFSKFKYDNMSVETLLNMTASMP  450 (539)
Q Consensus       372 ~~~~~~~-~p~s~g~v~l~~~d~~~~p~i~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (539)
                      ++...+. .|.|||+|+|.+  |.+.|+|+++|+.++.|++.+.++++.+++++++..+..+..                
T Consensus        93 ~~~~~~l~~P~SRG~V~L~S--p~~~P~I~pnyLs~p~D~~~lv~~i~~~r~~~~~~p~~~~~~----------------  154 (181)
T d1kdga2          93 TITVYLSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMIT----------------  154 (181)
T ss_dssp             EEEEEECTTCCCCBEEEECT--TCCEEEEECCTTCSHHHHHHHHHHHHHHTTTGGGSTTCEEEE----------------
T ss_pred             EEEEeeccCCCCCCeEEeCC--CCCCCcccccccCCHHHHHHHHHHHHHHHHHHcCCCCCcccc----------------
Confidence            3434444 499999999975  667899999999999999999999999999998876554432                


Q ss_pred             CCCCCCCCCCHHHHHHHHHhccCCCcccccc
Q 009241          451 LNLLPKHSNTSTSLEQFCRDTVMTIWHYHGG  481 (539)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~Gt  481 (539)
                          |....+++++.++++....+.+|+.||
T Consensus       155 ----p~~~~t~~~~~~~~~~~~~~~~H~vGT  181 (181)
T d1kdga2         155 ----PDVTQTLEEYVDAYDPATMNSNHWVSS  181 (181)
T ss_dssp             ----SCTTSCHHHHHHHSCGGGGCCSCCBCT
T ss_pred             ----CCCCCCHHHHHHHHHHhCCcccCCCCC
Confidence                223468889999999888899999997

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.12  E-value=1.3e-10  Score=111.28  Aligned_cols=55  Identities=13%  Similarity=0.126  Sum_probs=39.9

Q ss_pred             CCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCCCcccHHHHH
Q 009241          223 NPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAGALGSPQLLM  289 (539)
Q Consensus       223 ~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG~~~sp~lLl  289 (539)
                      ++.|++|+++++|++|..+++     ++. |.+.+ ++...++.     ++.||+|+++..+++||.
T Consensus       230 ~~~g~~i~~~~~V~~I~~~~~-----~~~-v~~~~-~~~~~~~~-----ad~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         230 ASLGDAAHVGARVEGLAREDG-----GWR-LIIEE-HGRRAELS-----VAQVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHGGGEESSEEEEEEECC-------CCE-EEEEE-TTEEEEEE-----CSEEEECSCHHHHHHHHT
T ss_pred             HHhhcccccCCEEEEEEEeCC-----eEE-EEEEc-CCeEEEEE-----CCEEEECCCHHHHHHhcc
Confidence            345889999999999998876     444 33443 45545554     799999999999999865

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.06  E-value=3.3e-10  Score=102.08  Aligned_cols=33  Identities=30%  Similarity=0.425  Sum_probs=31.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|||||||+|+||+.||+.+|+ |.||+|||+..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            5999999999999999999999 99999999853

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.87  E-value=2.1e-09  Score=102.37  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .+++||||||+|++|+++|.+|.+ |.+|+|+||++.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            457999999999999999999999 999999999975

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=9.9e-09  Score=96.83  Aligned_cols=35  Identities=34%  Similarity=0.526  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc--CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ--NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~--G~~VlvlEkG~~   80 (539)
                      .++||||||+|++|+++|++||+  |.+|+||||.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            47999999999999999999975  999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=2.7e-09  Score=96.82  Aligned_cols=34  Identities=32%  Similarity=0.588  Sum_probs=32.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ++|||||||+|++|+.+|.+|++ |++|+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            47999999999999999999999 99999999975

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=4.3e-09  Score=96.35  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.++|||+|||+|++|+++|.+|++ |.||+|||+.+.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            5678999999999999999999999 999999999764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.59  E-value=1.1e-08  Score=93.21  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=33.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++|||||||||+||++||++|++ |++|+|||+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccC
Confidence            57999999999999999999999 999999999764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.59  E-value=3.2e-08  Score=95.87  Aligned_cols=32  Identities=34%  Similarity=0.482  Sum_probs=29.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      -|+|||||++|+++|..|++ |  .+|+|+||...
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            39999999999999999987 5  59999999975

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.59  E-value=1e-08  Score=93.04  Aligned_cols=35  Identities=26%  Similarity=0.408  Sum_probs=33.1

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++|||||||+|++|+++|+.|++ |.||+|||+.+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            57999999999999999999999 999999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=2.1e-08  Score=91.84  Aligned_cols=35  Identities=29%  Similarity=0.556  Sum_probs=33.2

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      +|||||||||++|+++|.+|++ |+||+|||+++..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            7999999999999999999999 9999999998753

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=1.4e-08  Score=92.06  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +.+||+||||+|++|+.+|.+|++ |.+|+|+|++.
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~   38 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA   38 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            457999999999999999999999 99999999985

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.52  E-value=1.3e-08  Score=94.85  Aligned_cols=32  Identities=47%  Similarity=0.773  Sum_probs=31.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ||+||||||++|+.+|.+|++ |+||+||||+.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            999999999999999999999 99999999975

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.51  E-value=2.1e-08  Score=98.76  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=33.1

Q ss_pred             CCCccEEEECCCcchHHHHHhhh------c-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLS------Q-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La------~-G~~VlvlEkG~~~   81 (539)
                      .++|||||||+|+||+++|++||      + |++|+||||+..+
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            34699999999999999999998      3 8999999999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.48  E-value=2.4e-08  Score=90.59  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=31.9

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||||||+|++|+++|..|++ |++|+||||+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            6999999999999999999999 99999999986

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.2e-08  Score=90.75  Aligned_cols=33  Identities=36%  Similarity=0.652  Sum_probs=31.7

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +|||||||+|++|+.+|.+|++ |.+|+|||++.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            6999999999999999999999 99999999975

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.44  E-value=3.2e-08  Score=90.29  Aligned_cols=36  Identities=31%  Similarity=0.522  Sum_probs=33.3

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      +.+|||||||+|++|+++|..|++ |++|+||||.+.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            347999999999999999999999 999999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=4.7e-08  Score=92.94  Aligned_cols=33  Identities=39%  Similarity=0.758  Sum_probs=31.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |||||||||++|+++|.+|++ |.+|+|+||.+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            899999999999999999999 999999999876

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.41  E-value=6.8e-08  Score=91.43  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=31.5

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ++||+|||+|++|+++|..|++ |.+|+||||.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            5799999999999999999999 99999999976

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.37  E-value=3.8e-07  Score=84.60  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=30.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.|+|||+|++|+++|..|++ |.+|+||||.+.
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            359999999999999999999 999999999764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.4e-07  Score=91.31  Aligned_cols=37  Identities=32%  Similarity=0.391  Sum_probs=33.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .++.+|||||||.+|++||++|++ |.+|+|||+.+..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            456789999999999999999999 9999999998764

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.26  E-value=1.6e-07  Score=86.20  Aligned_cols=36  Identities=22%  Similarity=0.407  Sum_probs=32.2

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~   80 (539)
                      +++|||||||+|+||+++|.+|++ |. +|+|+|+...
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            368999999999999999999999 75 6999999764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=1.8e-07  Score=81.92  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=30.3

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .|||||||||++|+.+|..|++ |++|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            3999999999999999999999 9999999974

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.9e-07  Score=90.73  Aligned_cols=33  Identities=36%  Similarity=0.593  Sum_probs=31.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ||||||||++|+++|++|++ |.+|+||||.+..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            89999999999999999999 9999999998754

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.22  E-value=2.5e-07  Score=86.04  Aligned_cols=34  Identities=35%  Similarity=0.502  Sum_probs=31.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~   81 (539)
                      .||+|||||++|+++|++|++ |. +|+||||.+..
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            389999999999999999999 96 69999998753

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.21  E-value=3.6e-07  Score=84.87  Aligned_cols=38  Identities=34%  Similarity=0.402  Sum_probs=34.8

Q ss_pred             CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           43 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        43 ~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+++||+||||+|++|+.+|..|++ |.+|+|||+.+.
T Consensus        38 ~~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~   76 (261)
T d1mo9a1          38 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPF   76 (261)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCc
Confidence            34568999999999999999999999 999999999875

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.21  E-value=4e-07  Score=84.13  Aligned_cols=38  Identities=29%  Similarity=0.287  Sum_probs=33.8

Q ss_pred             CCCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           43 KPVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        43 ~~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|..+.+|||||+|++|+++|++|++ |.+|+||||...
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            34556789999999999999999999 999999999764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.14  E-value=5.3e-07  Score=86.71  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=32.4

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      ..+|+|||||++|+++|++|++ |.+|+||||.+..
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~   65 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   65 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            4589999999999999999999 9999999998764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.13  E-value=5.6e-07  Score=85.39  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDSPY   82 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~~   82 (539)
                      |||||||++|+++|++|++ |.+|+||||.+...
T Consensus         4 V~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G   37 (373)
T d1seza1           4 VAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG   37 (373)
T ss_dssp             EEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred             EEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence            9999999999999999999 99999999987643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.2e-06  Score=75.64  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=33.0

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .....|+|||||++|+.||+.|++ |.+|+|+||.+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            345689999999999999999999 999999999876

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.11  E-value=6.9e-07  Score=81.36  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=31.2

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~   80 (539)
                      +.||+||||+|+||+++|.+|++ |. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            57999999999999999999999 75 7999998643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.04  E-value=1.2e-06  Score=83.65  Aligned_cols=33  Identities=18%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      -|+|||||++|+++|++|++ |.+|+|+||.+..
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            49999999999999999999 9999999999864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=7.9e-07  Score=78.17  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ++..||+|||+|++|+.+|..|++ |.+|+|||+...
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            346899999999999999999999 999999998764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=1.1e-05  Score=64.42  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -++|||+|+.|+-+|..|++ |.+|.|+|+++.
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            39999999999999999999 999999999874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.95  E-value=3.1e-05  Score=62.14  Aligned_cols=32  Identities=16%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-.|..|+. |.+|.++|+++.
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            59999999999999999999 999999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.89  E-value=1.5e-05  Score=65.14  Aligned_cols=33  Identities=36%  Similarity=0.532  Sum_probs=31.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|+.|+-+|..|++ |.+|.|+|+++.
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            469999999999999999999 999999999875

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.88  E-value=2.2e-06  Score=75.39  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..+||+|||||++|+.+|..|++ |.+|+|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            36899999999999999999999 999999998764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.86  E-value=2.7e-05  Score=62.28  Aligned_cols=33  Identities=33%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -.++|||+|+.|+-.|..|++ |.+|.|+|+.+.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            359999999999999999999 999999999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.86  E-value=2.9e-05  Score=62.64  Aligned_cols=32  Identities=25%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+=+|..+++ |.+|.|+|+++.
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            59999999999999999999 999999999874

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.85  E-value=4e-06  Score=80.98  Aligned_cols=36  Identities=31%  Similarity=0.575  Sum_probs=32.3

Q ss_pred             CCccEEEECCCcchHHHHHhhh-----c-CCeEEEEcCCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLS-----Q-NASVLLLERGDSP   81 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La-----~-G~~VlvlEkG~~~   81 (539)
                      ..|||+|||||++|+++|..|+     + |.+|+||||.+.+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            3599999999999999999996     4 8999999998754

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.83  E-value=8.7e-05  Score=59.00  Aligned_cols=32  Identities=31%  Similarity=0.568  Sum_probs=30.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++.
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            59999999999999999999 999999999975

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=4.5e-06  Score=79.40  Aligned_cols=36  Identities=22%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      ..++||+|||+|++|+++|+.|++   |.+|+|+|+.+.
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            347999999999999999999995   899999999875

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.80  E-value=4.4e-06  Score=77.77  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~   81 (539)
                      .||+|||+|++|+++|+.|++ |. +|+|+||.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            689999999999999999999 96 99999998753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=7.6e-05  Score=59.80  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=30.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -++|||+|+.|+-+|..|++ |.+|.|+|+.+.
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            59999999999999999999 999999999875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.75  E-value=9.2e-06  Score=73.62  Aligned_cols=36  Identities=19%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             CCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           45 VSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        45 ~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...-+|+|||+|++|+++|..|++ |.+|+|+|+.+.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            446799999999999999999999 999999999875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.75  E-value=6.7e-05  Score=60.26  Aligned_cols=32  Identities=22%  Similarity=0.420  Sum_probs=30.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|||+|..|+-.|..+++ |.+|.|+|+++.
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            59999999999999999999 999999999875

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=5e-06  Score=75.47  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=28.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-C---CeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-N---ASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G---~~VlvlEkG~   79 (539)
                      .+|||||+|++|++||.++++ |   .+|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            479999999999999999887 5   5899999975

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=6.6e-05  Score=66.70  Aligned_cols=35  Identities=34%  Similarity=0.557  Sum_probs=30.7

Q ss_pred             CCccEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           46 SYYDYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        46 ~~~DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      ..+++||||+|++|+.+|..|.+ |  .+|++|++.+.
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            46899999999999999999988 6  57999988664

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.62  E-value=1.2e-05  Score=70.53  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             EEEECCCcchHHHHHhhhc-CC-eEEEEcCCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDSP   81 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~~   81 (539)
                      |+|||||++|+.+|..|++ |. +|.|+||.+..
T Consensus         7 VaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           7 IALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             EEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            9999999999999999999 98 59999998763

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=1e-05  Score=73.34  Aligned_cols=33  Identities=30%  Similarity=0.347  Sum_probs=30.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-C-------CeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-N-------ASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G-------~~VlvlEkG~~   80 (539)
                      +.|+|||||+||++||++|++ |       .+|.|+||.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            679999999999999999988 7       58999999886

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=0.00031  Score=56.04  Aligned_cols=30  Identities=20%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      .++|||+|+.|+-.|..|++ |.+|.|||+.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            49999999999999999999 9999999975

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.44  E-value=3.3e-05  Score=69.58  Aligned_cols=32  Identities=31%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             cEEEECCCcchHHHHHhhhc---CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ---NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~---G~~VlvlEkG~~   80 (539)
                      -|+|||||+||++||..|++   |.+|+|+|+.+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            49999999999999999976   679999999975

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.39  E-value=0.00028  Score=55.91  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=27.2

Q ss_pred             cEEEECCCcchHHHHHhhh---c-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLS---Q-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La---~-G~~VlvlEkG~~   80 (539)
                      .++|||+|+.|+-+|..|+   . |.+|.|+|+++.
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            5999999999999887544   4 789999999874

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00036  Score=56.97  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=28.0

Q ss_pred             cEEEECCCcchHHHHHhhh----c-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLS----Q-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La----~-G~~VlvlEkG~~   80 (539)
                      .++|||+|+.|+-+|..|+    + |.+|.++|+++.
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            5999999999998888885    3 889999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.22  E-value=0.00056  Score=59.58  Aligned_cols=31  Identities=29%  Similarity=0.468  Sum_probs=28.1

Q ss_pred             EEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      |+|||+|++|+.+|..|++ +  .+|+++||++.
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~   36 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCc
Confidence            8999999999999999998 4  58999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.88  E-value=4.8e-05  Score=68.77  Aligned_cols=30  Identities=30%  Similarity=0.331  Sum_probs=27.4

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |+|||+|.+|+++|++|++ |.+|+++|+..
T Consensus         3 V~VIGaGi~GlstA~~L~~~G~~v~v~e~~~   33 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHERYHSVLQPLDVK   33 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTSSSCEEE
T ss_pred             EEEECchHHHHHHHHHHHHCCCCceEEeeee
Confidence            8999999999999999999 99888888754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.80  E-value=0.0003  Score=56.14  Aligned_cols=33  Identities=39%  Similarity=0.606  Sum_probs=30.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      +++|||||+.|+-+|..|++ |.+|.|+|+++..
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            69999999999999999999 9999999998753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.74  E-value=0.00045  Score=54.44  Aligned_cols=33  Identities=27%  Similarity=0.482  Sum_probs=31.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            59999999999999999999 9999999999763

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.70  E-value=0.00056  Score=54.02  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      -++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            49999999999999999999 9999999999753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.63  E-value=0.00055  Score=54.42  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      -.++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            469999999999999999999 9999999999863

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.62  E-value=0.00057  Score=54.55  Aligned_cols=33  Identities=27%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+.+..
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP   65 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence            69999999999999999999 9999999998753

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.022  Score=44.97  Aligned_cols=47  Identities=19%  Similarity=0.263  Sum_probs=37.7

Q ss_pred             CCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeC-CCCeEEEEeccCCCCeEEEcCC
Q 009241          224 PSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDA-TDAEHIAYLRNGPKNEIIVSAG  280 (539)
Q Consensus       224 ~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~-~g~~~~~~~~~~~a~~VVlAaG  280 (539)
                      ..+++++++++|+.|.-+++     ++.+|++++. +|+..++.     .+.|+++-|
T Consensus        78 ~~~I~v~~~~~v~~i~G~~~-----~v~~v~l~~~~tge~~~l~-----vdgvFv~IG  125 (126)
T d1fl2a2          78 LKNVDIILNAQTTEVKGDGS-----KVVGLEYRDRVSGDIHNIE-----LAGIFVQIG  125 (126)
T ss_dssp             CTTEEEESSEEEEEEEESSS-----SEEEEEEEETTTCCEEEEE-----CSEEEECSC
T ss_pred             ccceeEEcCcceEEEEcccc-----ceeeEEEEECCCCCEEEEE-----CCEEEEEeC
Confidence            35899999999999987665     7999999874 57766664     689998866

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.001  Score=53.12  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=30.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .++|||+|+.|+-+|..|++ |.+|.|+|+++..
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            59999999999999999999 9999999999763

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.20  E-value=0.0013  Score=55.77  Aligned_cols=32  Identities=31%  Similarity=0.556  Sum_probs=28.9

Q ss_pred             cEEEECCCcchHHHHHhhhc-C--CeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-N--ASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G--~~VlvlEkG~~   80 (539)
                      -|||||+|++|+.+|.+|.+ +  .+|+|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            38999999999999999999 6  58999999875

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.98  E-value=0.0023  Score=53.59  Aligned_cols=32  Identities=31%  Similarity=0.610  Sum_probs=29.0

Q ss_pred             EEEECCCcchHHHHHhhhcCCeEEEEcCCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQNASVLLLERGDSP   81 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~G~~VlvlEkG~~~   81 (539)
                      |+|||+|++|+-+|..|+++.+|.|+|+.+.+
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~Vtvv~~~~~~   34 (167)
T d1xhca1           3 VVIVGNGPGGFELAKQLSQTYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHTTTSEEEEECSSSSC
T ss_pred             EEEECCcHHHHHHHHHHHcCCCEEEEeccccc
Confidence            89999999999999999887799999998753

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.98  E-value=0.0024  Score=62.77  Aligned_cols=38  Identities=32%  Similarity=0.338  Sum_probs=35.4

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      .+.+|||||+|+|..=+.+|..|+. |.|||-|||..++
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yY   41 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYY   41 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcC
Confidence            3568999999999999999999999 9999999999874

>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=95.91  E-value=0.0067  Score=52.19  Aligned_cols=53  Identities=9%  Similarity=0.095  Sum_probs=43.5

Q ss_pred             ecCcCcceEEEecC--CCCCCCCeeecCCCCChHHHHHHHH-HHHHHHHHHccccc
Q 009241          377 IIGPVSTGHLELRT--RNPNDTPSVTFNYFKEPEDLQRCVQ-GISTIEKIIESKSF  429 (539)
Q Consensus       377 ~~~p~s~g~v~l~~--~d~~~~p~i~~~~~~~~~D~~~~~~-~~~~~~~~~~~~~~  429 (539)
                      ...|...++|+|+.  +|.+|.|.++++|..++.|++++.. +.+.+.+++.+.+.
T Consensus       122 e~~P~~~Nrv~l~~~~~D~~GiP~~~~~~~~~~ne~~~~~~~m~~~~~~~~~a~Gg  177 (198)
T d2f5va2         122 RTEPKEENKLWFSDKITDAYNMPQPTFDFRFPAGRTSKEAEDMMTDMCVMSAKIGG  177 (198)
T ss_dssp             CCCCCTTCEEEEEEEEECTTSSEEEEEECCCCTTHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             cccCCCCCEEEeCCCCcCCCCCCeeEEEEecCccHHHHHHHHHHHHHHHHHHHcCC
Confidence            35677888999974  6999999999999999999888876 55778888877654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.83  E-value=0.0015  Score=55.73  Aligned_cols=32  Identities=25%  Similarity=0.361  Sum_probs=28.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ||+|||||++|+-+|..|++ |.+|.|+|..+.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            79999999999999999999 988877777664

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.098  Score=41.03  Aligned_cols=33  Identities=36%  Similarity=0.477  Sum_probs=30.1

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -+|+|||+|-+++=.|..|++ ..+|.+|-|++.
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            379999999999999999999 999999988764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.14  E-value=0.0029  Score=53.97  Aligned_cols=33  Identities=30%  Similarity=0.408  Sum_probs=27.9

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..|+|||+|++|+-+|..|.+ |.+|.|++.++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            349999999999999999999 987777766553

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.13  E-value=0.0069  Score=51.09  Aligned_cols=31  Identities=19%  Similarity=0.257  Sum_probs=29.1

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |+|||+|..|..+|.+|++ |.+|.|++|...
T Consensus         5 IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             EEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            8999999999999999999 999999999753

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.95  E-value=0.0066  Score=47.51  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=28.2

Q ss_pred             cEEEECCCcchHHHHHhhhc----CCeEEEEcCCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ----NASVLLLERGDSP   81 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~----G~~VlvlEkG~~~   81 (539)
                      .++|||||+.|+-+|..|+.    |.+|.|+|+++..
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            59999999999999977665    4679999998763

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.33  E-value=0.0099  Score=50.37  Aligned_cols=30  Identities=37%  Similarity=0.501  Sum_probs=28.6

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +.|||+|..|+..|..|++ |.+|.++++.+
T Consensus         4 iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            8899999999999999999 99999999975

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.016  Score=48.15  Aligned_cols=31  Identities=23%  Similarity=0.189  Sum_probs=29.2

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |.|||+|..|...|..|++ |.+|.++.|.+.
T Consensus         3 I~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            7999999999999999999 999999999764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.98  E-value=0.013  Score=46.82  Aligned_cols=31  Identities=32%  Similarity=0.535  Sum_probs=29.0

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |+|+|+|.-|..+|..|.+ |.+|+++|+.+.
T Consensus         3 IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            8999999999999999999 999999999763

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.017  Score=42.93  Aligned_cols=32  Identities=13%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -|+|+|.|.+|.++|..|++ |.+|.+.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence            38999999999999999999 999999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.27  E-value=0.029  Score=46.02  Aligned_cols=32  Identities=13%  Similarity=0.104  Sum_probs=28.8

Q ss_pred             cEEEE--CCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVI--GGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVV--GsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++||  |+|..|+-+|..|++ |.+|.|+|+.+.
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            46665  999999999999999 999999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.84  E-value=0.019  Score=45.78  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=29.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .|||||.|-.|..+|..|.+ |.+|+++|+.+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            38999999999999999999 999999999763

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.045  Score=46.69  Aligned_cols=30  Identities=30%  Similarity=0.563  Sum_probs=28.5

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |.|||+|..|...|..++. |++|+++|+.+
T Consensus         7 vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           7 VTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            8999999999999999999 99999999875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.40  E-value=0.044  Score=41.77  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -+|+|||+|.+|.=+|..|++ ..+|+++-+-+
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            369999999999999999999 77766665543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.01  E-value=0.073  Score=44.40  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ...|+|||+|.+|+.||.-+.. |.+|.++|....
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            3579999999999999999988 999999998764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=90.67  E-value=0.071  Score=43.82  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      ...|+|||+|.+|+.||..+.. |.+|.++|...
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            3569999999999999999999 99999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.37  E-value=0.058  Score=45.68  Aligned_cols=30  Identities=20%  Similarity=0.375  Sum_probs=28.2

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |.|||+|..|...|..++. |++|.++|+.+
T Consensus         7 vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           7 AAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             EEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            8999999999999999999 99999999865

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.27  E-value=0.097  Score=44.85  Aligned_cols=30  Identities=23%  Similarity=0.295  Sum_probs=28.1

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +.|||.|..|++.|..||+ |.+|+.+|...
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            7899999999999999999 99999999764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.93  E-value=0.1  Score=42.53  Aligned_cols=32  Identities=31%  Similarity=0.364  Sum_probs=28.0

Q ss_pred             cEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~   80 (539)
                      .|+|||||.+|+=+|..|.+ |. +|.+++|.+.
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            59999999999999999888 75 6889988764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.92  E-value=0.13  Score=40.49  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=31.5

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDSP   81 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~~   81 (539)
                      -||+|||+|-+.+-.|..|++ -.+|.||-|++..
T Consensus        35 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          35 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            479999999999999999999 9999999998764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.53  E-value=0.076  Score=43.11  Aligned_cols=28  Identities=25%  Similarity=0.442  Sum_probs=26.4

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEc
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLE   76 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlE   76 (539)
                      -|+|||||..|+.-|..|.+ |.+|.|+-
T Consensus        15 rvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          15 RILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             EEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            49999999999999999999 99999994

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.03  E-value=0.11  Score=39.90  Aligned_cols=30  Identities=23%  Similarity=0.329  Sum_probs=27.3

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      -|+|||+|..|..-|..|.+ |.+|+++...
T Consensus        14 ~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          14 DCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            59999999999999999999 9999998643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=88.86  E-value=0.098  Score=44.30  Aligned_cols=31  Identities=29%  Similarity=0.422  Sum_probs=28.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .+.|||+|.-|.+.|..|++ |.+|.+..+.+
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            59999999999999999999 89999998754

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.04  E-value=0.14  Score=42.79  Aligned_cols=29  Identities=21%  Similarity=0.402  Sum_probs=26.9

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERG   78 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG   78 (539)
                      |.|||+|.-|.+.|..|++ |.+|.|..|.
T Consensus         3 I~ViGaG~~GtalA~~la~~g~~V~l~~r~   32 (180)
T d1txga2           3 VSILGAGAMGSALSVPLVDNGNEVRIWGTE   32 (180)
T ss_dssp             EEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            7899999999999999999 9999998664

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.89  E-value=0.13  Score=43.15  Aligned_cols=30  Identities=23%  Similarity=0.391  Sum_probs=27.3

Q ss_pred             EEEE-CCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVI-GGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVV-GsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |.|| |+|.-|.+.|..|++ |.+|+|..|.+
T Consensus         3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            6788 779999999999999 99999998865

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=87.05  E-value=0.15  Score=42.07  Aligned_cols=31  Identities=26%  Similarity=0.311  Sum_probs=27.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|+|+|+|+.|+.++.-|.. |.+|+++|+.+
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            48999999999998877766 99999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=86.53  E-value=0.2  Score=41.43  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=29.0

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -.|+|+|+|.++-++++.|.+ |.+|.|+-|..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            469999999999999999999 99999998864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=85.91  E-value=0.23  Score=40.70  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=27.8

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      +.|||.|..|...|..|.+ |.+|.+.++.+
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            7899999999999999999 99999998864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.69  E-value=0.33  Score=37.03  Aligned_cols=48  Identities=19%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAG  280 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG  280 (539)
                      +.+..++.|++++++++|+++.  ++     .   +.+...++...++     .++.||+|+|
T Consensus        68 l~~~l~~~gV~i~~~~~V~~i~--~~-----~---~~~~~~~~~~~~i-----~~D~vi~A~G  115 (115)
T d1lvla2          68 VAESLKKLGIALHLGHSVEGYE--NG-----C---LLANDGKGGQLRL-----EADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHTCEEETTCEEEEEE--TT-----E---EEEECSSSCCCEE-----CCSCEEECCC
T ss_pred             HHHHHHhhcceEEcCcEEEEEc--CC-----e---EEEEEcCCCeEEE-----EcCEEEEecC
Confidence            3345567899999999999984  33     2   2222334444444     4899999998

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=0.21  Score=41.26  Aligned_cols=31  Identities=19%  Similarity=0.267  Sum_probs=27.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~   79 (539)
                      .|+|+|+|+.|+.++.-|.. |. +|+++|+.+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            49999999999999988877 87 799999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.20  E-value=0.28  Score=40.32  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=26.7

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      |+|+|+|+.|+.++.-+.. |.+|+++++.+.
T Consensus        31 vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          31 VGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             EEEECCCCcchhHHHHhhhccccccccccchh
Confidence            9999999999998876666 999999998654

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=84.80  E-value=0.27  Score=39.71  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=28.8

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -+||+|.|..|..+|..|.+ |.+|+++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            39999999999999999999 99999999865

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=84.33  E-value=0.31  Score=39.21  Aligned_cols=31  Identities=26%  Similarity=0.460  Sum_probs=28.4

Q ss_pred             cEEEEC-CCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIG-GGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVG-sG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      -|.||| .|..|...|..|.+ |++|.+.++..
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             eEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            399999 79999999999999 99999998864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=83.95  E-value=0.5  Score=38.15  Aligned_cols=36  Identities=17%  Similarity=0.169  Sum_probs=29.8

Q ss_pred             CCCCccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241           44 PVSYYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD   79 (539)
Q Consensus        44 ~~~~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~   79 (539)
                      +.+..=|.|||+|..|.++|+.|+. +. +++|++..+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            3445669999999999999999988 75 899998654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.42  E-value=0.33  Score=39.69  Aligned_cols=31  Identities=16%  Similarity=0.080  Sum_probs=26.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      .|+|+|+|+.|+.++.-+.. |.+|+++++.+
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            49999999999987776666 99999998875

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.35  E-value=0.75  Score=35.49  Aligned_cols=55  Identities=15%  Similarity=0.089  Sum_probs=34.1

Q ss_pred             hhhhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEE--EEeccCCCCeEEEcCC
Q 009241          218 LLEYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHI--AYLRNGPKNEIIVSAG  280 (539)
Q Consensus       218 ~l~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~--~~~~~~~a~~VVlAaG  280 (539)
                      +....++.|++++++++|++|..++++   .++..+..  ..|+...  ..+   .++.||+|+|
T Consensus        69 ~~~~l~~~Gv~i~~~~~v~~i~~~~~g---~~v~~~~~--~~g~~~~~~~~~---~~D~vl~a~G  125 (125)
T d3grsa2          69 CTEELENAGVEVLKFSQVKEVKKTLSG---LEVSMVTA--VPGRLPVMTMIP---DVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHTTCEEETTEEEEEEEEETTE---EEEEEEEC--CTTSCCEEEEEE---EESEEEECSC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCe---EEEEEEEc--cCCcCcCccccc---cCCEEEEEeC
Confidence            334556789999999999999887762   12222221  2343211  111   3789999987

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.20  E-value=0.041  Score=48.48  Aligned_cols=33  Identities=9%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      ..|+|||+|..|+-+|..|++ |.+|.|+++.+.
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~  214 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEANPQIAIPYKRET  214 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhcCCceEEEEeccc
Confidence            468999999999999999999 999999999875

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.08  E-value=0.42  Score=40.26  Aligned_cols=30  Identities=27%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             EEEECCCcchHHHHHhhhcCCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQNASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~G~~VlvlEkG~   79 (539)
                      |.|||.|..|+..|..+|+|.+|+.+|-.+
T Consensus         3 I~ViGlG~vGl~~a~~~a~g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLSLQNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHTTTSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHHCCCcEEEEECCH
Confidence            789999999999998887799999998765

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=81.49  E-value=0.54  Score=37.56  Aligned_cols=31  Identities=16%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             cEEEECCCcchHHHHHhhhc-CC--eEEEEcCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NA--SVLLLERGD   79 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~--~VlvlEkG~   79 (539)
                      -|.|||+|..|.++|+.|+. |.  .+.|+++..
T Consensus         7 KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           7 KVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            49999999999999999999 73  799999754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.39  E-value=0.42  Score=38.81  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      -|+|||-|..|-.+|.+|.. |.+|++.|.-|.
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~   58 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDPI   58 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEeccccccHHHHHHHHhCCCeeEeeecccc
Confidence            49999999999999999999 999999999763

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=81.19  E-value=0.41  Score=42.03  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=29.2

Q ss_pred             ccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCCC
Q 009241           48 YDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGDS   80 (539)
Q Consensus        48 ~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~~   80 (539)
                      .-|+|||.|..|+.+|..|+. |. ++.|++-...
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            569999999999999999999 95 8999987654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=81.17  E-value=0.63  Score=38.08  Aligned_cols=33  Identities=18%  Similarity=0.223  Sum_probs=28.7

Q ss_pred             CccEEEECCCcchHHHHHhhhc-CC-eEEEEcCCC
Q 009241           47 YYDYIVIGGGTAGCPLAASLSQ-NA-SVLLLERGD   79 (539)
Q Consensus        47 ~~DviVVGsG~aG~~aA~~La~-G~-~VlvlEkG~   79 (539)
                      .-.|+|+|+|.++-++++.|.+ |. +|.|+-|..
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            3469999999999999999999 85 799987754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=80.84  E-value=0.46  Score=38.46  Aligned_cols=32  Identities=25%  Similarity=0.253  Sum_probs=30.2

Q ss_pred             cEEEECCCcchHHHHHhhhc-CCeEEEEcCCCC
Q 009241           49 DYIVIGGGTAGCPLAASLSQ-NASVLLLERGDS   80 (539)
Q Consensus        49 DviVVGsG~aG~~aA~~La~-G~~VlvlEkG~~   80 (539)
                      .++|+|-|..|-.+|.+|.. |.+|.|.|.-|.
T Consensus        25 ~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          25 IVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             EEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            59999999999999999999 999999999874

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.51  E-value=0.98  Score=36.37  Aligned_cols=45  Identities=16%  Similarity=0.268  Sum_probs=33.0

Q ss_pred             hhcCCCCcEEEcCcEEEEEEecCCCCCCCeEEEEEEEeCCCCeEEEEeccCCCCeEEEcCC
Q 009241          220 EYANPSGLTVLLHASVHKILFRNKGKARPVAHGVVFRDATDAEHIAYLRNGPKNEIIVSAG  280 (539)
Q Consensus       220 ~~~~~~gv~i~~~t~V~~l~~~~~~~~~~~v~gV~~~~~~g~~~~~~~~~~~a~~VVlAaG  280 (539)
                      ...+..|+++++++.|.+|.  ++        |+.+.. +|+++.+     +++.||+|+|
T Consensus       116 ~~~~~~gv~~~~~~~v~~i~--~~--------gv~~~~-~g~e~~i-----~aD~Vv~A~G  160 (162)
T d1ps9a2         116 TTLLSRGVKMIPGVSYQKID--DD--------GLHVVI-NGETQVL-----AVDNVVICAG  160 (162)
T ss_dssp             HHHHHTTCEEECSCEEEEEE--TT--------EEEEEE-TTEEEEE-----CCSEEEECCC
T ss_pred             HHHhhCCeEEEeeeEEEEEc--CC--------CCEEec-CCeEEEE-----ECCEEEECCC
Confidence            35567899999999999874  43        444443 5665555     5999999999

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.22  E-value=0.57  Score=38.11  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             EEEECCCcchHHHHHhhhc-CCeEEEEcCCC
Q 009241           50 YIVIGGGTAGCPLAASLSQ-NASVLLLERGD   79 (539)
Q Consensus        50 viVVGsG~aG~~aA~~La~-G~~VlvlEkG~   79 (539)
                      |+|+|+|+.|+.++..+.. |.+|++++..+
T Consensus        31 vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          31 VAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            8999999999987777766 99999998765