Citrus Sinensis ID: 009248

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------54
MAELEAEKMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQDNEEIDRNSTVPPKKGAAKVSNNSKKRKKSKDSSEEEEEEENSDYESDDSEEQANGQSERKKQAGGKASGRGRGKAANKLSGDGKGTGRGRGRPTSTNKSSQSVQGKTGKRGRPRKS
ccccccccccEEEEEEEccccEEEEEcccccccccccccccccEEEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccEEccccccccEEEEEEccccEEEEEccccEEEEEccccccccccccccEEEEEEEEcccccEEEEEccccccEEEEEcccccEEEEEccccccccccccccccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccEEEEEEEccccccccccccEEEEEcccccEEEEccccEEEEEccccccccEEcEEEEcccccccEEEEEccccEEEEEEcccEEEEEccccccccccccccccccccEEEccccccEEEEEEcccccEEEEEEccccccEEEccccccccccccccccccccEEccccccccEEEcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccEHHHHcccEEEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHcccEEEEEEccccEEEEEEccccEEEEEccccccccccccccccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHccccEEEEEEEEEEcccEEEEEEcccEEEEEccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEcccccccccccccccccccccEEHHHccccEEEEEEEcccEEEEEEcccEEEEEEEEccccccccccccccccccccEHHHccccEEEEEEEccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
MAELEAEKMVEeetgkekggellfCGSTCwdavgrrkgaldgnlvsptrlrplvgvDIRFVAAGCVSCHCvavdvegrcytwgrnergqlghgdkiqrdrpTIVSELSKYkikkagagrshtvvvtedgnslafgwnkhgqlgsgsirneiepspvrclVSEVTATACGADFTVWLSSVEGASilnaglpqygqlghgtdneyntkdssVKLAYEAQPRPRAIAALAGETIVKVACGtnhtvavdskgyvytwgfggygrlghreqkdewvprrvdvfqrnnvlppeavisagsvnssctagggqlymwgklknngddwmypkplmdlsgwnlrcmdsgnmhhfvgadssciswghaqygelgygpygqkssampkkvdiLEGMHVISVACGYGhslvivdrtnvgerldqldvydgkassqdneeidrnstvppkkgaakvsnnskkrkkskdsseeeeeeensdyesddseeqangqserkkqaggkasgrgrgkaanklsgdgkgtgrgrgrptstnkssqsvqgktgkrgrprks
maeleaekmveeetgkekggelLFCGSTCWDAVGRrkgaldgnlvsptrlrpLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGrnergqlghgdkiqrdrpTIVSELSkykikkagagrshtvvvTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTnhtvavdskgyvyTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPpeavisagsvnsSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVydgkassqdneeidrnstvppkkgaakvsnnskkrkkskdsseeeeeeensdyesddseeqangqserkkqaggkasgrgrgkaanklsgdgkgtgrgrgrptstnkssqsvqgktgkrgrprks
maeleaekmveeetgkekggeLLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQDNEEIDRNSTVPPKKGAAKVsnnskkrkkskdsseeeeeeensdyesddseeQANGQSErkkqaggkasgrgrgkaankLSgdgkgtgrgrgrPTSTNKSSQSVQGKTGKRGRPRKS
********************ELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGH*********TIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHG*************LAYE***RPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVY****************************************************************************************************************************
*******KMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDG**************************************************************************************************************************
*****************KGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVY****************************************************************************************************************************
MAELEAEKMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGH*TD************AYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQDNEEIDRNSTVPPKKGAAKVSNNSKKRKKSKDS************************************************************************************
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MAELEAEKMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQDNEEIDRNSTVPPKKGAAKVSNNSKKRKKSKDSSEEEEEEENSDYESDDSEEQANGQSERKKQAGGKASGRGRGKAANKLSGDGKGTGRGRGRPTSTNKSSQSVQGKTGKRGRPRKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query539 2.2.26 [Sep-21-2011]
Q9P258522 Protein RCC2 OS=Homo sapi yes no 0.719 0.743 0.382 6e-74
Q8BK67520 Protein RCC2 OS=Mus muscu yes no 0.717 0.744 0.385 1e-73
Q52KW8513 Protein RCC2 homolog OS=X N/A no 0.755 0.793 0.374 8e-73
Q6NYE2495 Protein RCC2 homolog OS=D yes no 0.751 0.818 0.364 1e-68
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.556 0.061 0.280 6e-31
Q9FN03440 Ultraviolet-B receptor UV no no 0.601 0.736 0.313 2e-30
O95714 4834 E3 ubiquitin-protein liga no no 0.458 0.051 0.319 7e-29
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.458 0.051 0.319 7e-29
Q5RCZ7551 RCC1 and BTB domain-conta no no 0.500 0.490 0.317 4e-26
O95199551 RCC1 and BTB domain-conta no no 0.500 0.490 0.317 4e-26
>sp|Q9P258|RCC2_HUMAN Protein RCC2 OS=Homo sapiens GN=RCC2 PE=1 SV=2 Back     alignment and function desciption
 Score =  278 bits (712), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 162/424 (38%), Positives = 236/424 (55%), Gaps = 36/424 (8%)

Query: 20  GELLFCGSTCWDAVGRRKGA--------LDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCV 71
           G+LL  G+T WD +GR++          L  NL  P R   L GV +R V +G  + H +
Sbjct: 104 GQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRYGCLAGVRVRTVVSGSCAAHSL 163

Query: 72  AVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNS 131
            +  EG+ ++WGRNE+GQLGHGD  + + P ++  LS   I  A  GR+HT+ +TE G+ 
Sbjct: 164 LITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHTLALTETGSV 223

Query: 132 LAFGWNKHGQLGSGSIRNEIEPSPVRCLVS--EVTATACGADFTVWLSSVEGASILNAGL 189
            AFG NK GQLG G+  + + PSP + + +   +T  ACGA+F++ +      ++ + G 
Sbjct: 224 FAFGENKMGQLGLGNQTDAV-PSPAQIMYNGQPITKMACGAEFSMIMDC--KGNLYSFGC 280

Query: 190 PQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGET------------IVKVACG 237
           P+YGQLGH +D ++  +  + ++ Y+ +  PR +A    +T            +  VACG
Sbjct: 281 PEYGQLGHNSDGKFIAR--AQRIEYDCELVPRRVAIFIEKTKDGQILPVPNVVVRDVACG 338

Query: 238 TNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAV--ISAGSV 295
            NHT+ +DS+  V++WGFGGYGRLGH EQKDE VPR V +F      P      I AG  
Sbjct: 339 ANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFD----FPGRGASQIYAGYT 394

Query: 296 NSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWG 355
            S   +  G L+ WG    + +  MYPK + DL GW +R +  G     V AD S ISWG
Sbjct: 395 CSFAVSEVGGLFFWGATNTSRESTMYPKAVQDLCGWRIRSLACGKSSIIVAADESTISWG 454

Query: 356 HA-QYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIV--DRTNVGERLDQL 412
            +  +GELGYG +  KSS   ++V  L+G+    VA GY HSLVI   +     E++ +L
Sbjct: 455 PSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSHSLVIARDESETEKEKIKKL 514

Query: 413 DVYD 416
             Y+
Sbjct: 515 PEYN 518
Required for completion of mitosis and cytokinesis. May function as a guanine nucleotide exchange factor for the small GTPase RAC1.
Homo sapiens (taxid: 9606)
>sp|Q8BK67|RCC2_MOUSE Protein RCC2 OS=Mus musculus GN=Rcc2 PE=2 SV=1 Back     alignment and function description
>sp|Q52KW8|RCC2_XENLA Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1 Back     alignment and function description
>sp|Q6NYE2|RCC2_DANRE Protein RCC2 homolog OS=Danio rerio GN=rcc2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q5RCZ7|RCBT2_PONAB RCC1 and BTB domain-containing protein 2 OS=Pongo abelii GN=RCBTB2 PE=2 SV=1 Back     alignment and function description
>sp|O95199|RCBT2_HUMAN RCC1 and BTB domain-containing protein 2 OS=Homo sapiens GN=RCBTB2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
224065999550 predicted protein [Populus trichocarpa] 0.957 0.938 0.807 0.0
302142613542 unnamed protein product [Vitis vinifera] 0.992 0.987 0.776 0.0
224082962539 predicted protein [Populus trichocarpa] 0.994 0.994 0.782 0.0
225458061548 PREDICTED: protein RCC2 homolog [Vitis v 0.992 0.976 0.766 0.0
356509755538 PREDICTED: protein RCC2-like [Glycine ma 0.951 0.953 0.767 0.0
356518146548 PREDICTED: protein RCC2-like [Glycine ma 0.953 0.937 0.775 0.0
255538862529 Protein RCC2, putative [Ricinus communis 0.972 0.990 0.748 0.0
449460213543 PREDICTED: protein RCC2 homolog [Cucumis 0.955 0.948 0.753 0.0
30686578538 regulator of chromosome condensation (RC 0.981 0.983 0.687 0.0
297850394536 regulator of chromosome condensation fam 0.959 0.964 0.701 0.0
>gi|224065999|ref|XP_002301995.1| predicted protein [Populus trichocarpa] gi|222843721|gb|EEE81268.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  873 bits (2256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/530 (80%), Positives = 465/530 (87%), Gaps = 14/530 (2%)

Query: 22  LLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYT 81
           LLFCG+TCWD +GR+KGA +GNLVSPTRLRPLVGV+IRFVA+G  SCHCVA+DVEGRCYT
Sbjct: 23  LLFCGATCWDIIGRKKGAQEGNLVSPTRLRPLVGVNIRFVASGSASCHCVALDVEGRCYT 82

Query: 82  WGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQ 141
           WGRNERGQLGHGD IQRDRPT+VSELSKYK+ KAGAGRSHTVVVTEDG SLAFGWNKHGQ
Sbjct: 83  WGRNERGQLGHGDTIQRDRPTVVSELSKYKLIKAGAGRSHTVVVTEDGLSLAFGWNKHGQ 142

Query: 142 LGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDN 201
           LGSGS RNEIE SPVRCLVS+V  TACGADFTVWLSSVEGASIL+AGLPQYGQLGHGTDN
Sbjct: 143 LGSGSARNEIESSPVRCLVSDVKTTACGADFTVWLSSVEGASILSAGLPQYGQLGHGTDN 202

Query: 202 EYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRL 261
           EYNTKDSSV+LAYEAQPRPRA+ ALA ETIVKVACGTNHTVAVDS GYVYTWGFGGYGRL
Sbjct: 203 EYNTKDSSVRLAYEAQPRPRALTALARETIVKVACGTNHTVAVDSNGYVYTWGFGGYGRL 262

Query: 262 GHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMY 321
           GHREQKDEWVPRRVDVF ++NVLPP+AVISAGSVNS+CTAGGGQLYMWGK+KN GDDWMY
Sbjct: 263 GHREQKDEWVPRRVDVFSKHNVLPPDAVISAGSVNSACTAGGGQLYMWGKIKNTGDDWMY 322

Query: 322 PKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDIL 381
           PKPLMDLSGWNLRCMDSGNMHHFVGAD+SCISWGHAQ GELGYGP GQKSSA+PKKVDIL
Sbjct: 323 PKPLMDLSGWNLRCMDSGNMHHFVGADNSCISWGHAQNGELGYGPSGQKSSAVPKKVDIL 382

Query: 382 EGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQDN---EEIDRNSTVP---- 434
           EGMHVI VACG GHS+VIVDR NVG++LDQLDVYDGKAS +     ++I+  S  P    
Sbjct: 383 EGMHVIGVACGMGHSMVIVDRMNVGDQLDQLDVYDGKASGEAKGFPKDINEGSGEPERKN 442

Query: 435 -----PKKGAAKVSNNSKKRKKSKDSSEEEEEEENSDYESDDSEEQANGQSERKKQAGGK 489
                 KKGAAK S+NS+KR KSKDSS E E+EEN D ESD SE+Q NGQ+E+K + GGK
Sbjct: 443 PVKQSAKKGAAKASDNSRKR-KSKDSS-ESEDEENGDDESDASEDQVNGQTEKKSKRGGK 500

Query: 490 ASGRGRGKAANKLSGDGKGTGRGRGRPTSTNKSSQSVQGKTGKRGRPRKS 539
            SGRG+ K   K + DGK TGRGRGRP S NKS+ S Q K GKRGRPRKS
Sbjct: 501 VSGRGQSKGGKKSTSDGKSTGRGRGRPLSGNKSTVSSQEKAGKRGRPRKS 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302142613|emb|CBI19816.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224082962|ref|XP_002306909.1| predicted protein [Populus trichocarpa] gi|222856358|gb|EEE93905.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225458061|ref|XP_002278592.1| PREDICTED: protein RCC2 homolog [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509755|ref|XP_003523611.1| PREDICTED: protein RCC2-like [Glycine max] Back     alignment and taxonomy information
>gi|356518146|ref|XP_003527743.1| PREDICTED: protein RCC2-like [Glycine max] Back     alignment and taxonomy information
>gi|255538862|ref|XP_002510496.1| Protein RCC2, putative [Ricinus communis] gi|223551197|gb|EEF52683.1| Protein RCC2, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449460213|ref|XP_004147840.1| PREDICTED: protein RCC2 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|30686578|ref|NP_173417.2| regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] gi|332191788|gb|AEE29909.1| regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297850394|ref|XP_002893078.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297338920|gb|EFH69337.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query539
TAIR|locus:2035423538 AT1G19880 [Arabidopsis thalian 0.775 0.776 0.785 3.4e-193
UNIPROTKB|Q9P258522 RCC2 "Protein RCC2" [Homo sapi 0.716 0.739 0.390 4.8e-71
MGI|MGI:1919784520 Rcc2 "regulator of chromosome 0.714 0.740 0.394 6.1e-71
ZFIN|ZDB-GENE-040426-2213495 rcc2 "regulator of chromosome 0.721 0.785 0.374 5.8e-66
FB|FBgn0031769487 CG9135 [Drosophila melanogaste 0.699 0.774 0.366 1.4e-62
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.604 0.740 0.312 3.6e-34
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.482 0.053 0.321 2.9e-29
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.482 0.053 0.321 2.9e-29
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.469 0.052 0.323 1e-25
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.623 0.093 0.283 3.9e-26
TAIR|locus:2035423 AT1G19880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1846 (654.9 bits), Expect = 3.4e-193, Sum P(2) = 3.4e-193
 Identities = 333/424 (78%), Positives = 378/424 (89%)

Query:    22 LLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYT 81
             LLFCG+T WD +G+RKGA++GNLVSPTRLRPLVGV+IRFVA GC S HCVA+DVEGRCYT
Sbjct:    22 LLFCGATAWDIIGKRKGAMEGNLVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGRCYT 81

Query:    82 WGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQ 141
             WGRNE+GQLGHGD IQRDRPT+VS LSK+KI KA AGR+HTVVV++DG SL FGWNK+GQ
Sbjct:    82 WGRNEKGQLGHGDMIQRDRPTVVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQ 141

Query:   142 LGSGSIRN-----EIEPSPVRCLVS-EVTATACGADFTVWLSSVEGASILNAGLPQYGQL 195
             LG GS +N     E+E +P+ C+VS EVT  ACGADFTVWLSS EGASIL AGLPQYGQL
Sbjct:   142 LGLGSAKNGFVSVEVESTPLPCVVSDEVTNVACGADFTVWLSSTEGASILTAGLPQYGQL 201

Query:   196 GHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGF 255
             GHGTDNE+N KDSSV+LAYEAQPRP+AIA+LAGETIVKVACGTNHTVAVD  GYVYTWGF
Sbjct:   202 GHGTDNEFNMKDSSVRLAYEAQPRPKAIASLAGETIVKVACGTNHTVAVDKNGYVYTWGF 261

Query:   256 GGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNN 315
             GGYGRLGHREQKDEW PRR+DVFQRNNVLPP A++SAGS NS+CTAGGGQLYMWGK+KNN
Sbjct:   262 GGYGRLGHREQKDEWAPRRIDVFQRNNVLPPNAILSAGSANSACTAGGGQLYMWGKIKNN 321

Query:   316 GDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMP 375
             GDDWMYPKP+MDLSGWNLR MDSG+MHHFVGADSSCISWGHAQYGELGYGP GQKSSA P
Sbjct:   322 GDDWMYPKPMMDLSGWNLRWMDSGSMHHFVGADSSCISWGHAQYGELGYGPNGQKSSAAP 381

Query:   376 KKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQLDVYDGKASSQDNEEIDRNSTVPP 435
             KKVD+LEGMHV+ VACG+ HS+VIVDRT++ +RL+QL+VYDGK S +++ E  +  T+ P
Sbjct:   382 KKVDMLEGMHVMGVACGFCHSMVIVDRTDIADRLEQLEVYDGKGSLEESVEEVKEETLAP 441

Query:   436 KKGA 439
             K+ A
Sbjct:   442 KQQA 445
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
UNIPROTKB|Q9P258 RCC2 "Protein RCC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919784 Rcc2 "regulator of chromosome condensation 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2213 rcc2 "regulator of chromosome condensation 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0031769 CG9135 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-24
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-16
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 9e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-04
PLN03237 1465 PLN03237, PLN03237, DNA topoisomerase 2; Provision 4e-04
pfam05793528 pfam05793, TFIIF_alpha, Transcription initiation f 0.001
pfam0855590 pfam08555, DUF1754, Eukaryotic family of unknown f 0.002
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.003
PTZ001081388 PTZ00108, PTZ00108, DNA topoisomerase 2-like prote 0.004
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  105 bits (264), Expect = 3e-24
 Identities = 94/390 (24%), Positives = 142/390 (36%), Gaps = 57/390 (14%)

Query: 46  SPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLG----------HGDK 95
            P             +   C   H + +D +G  Y+WG N+ G LG          + D 
Sbjct: 92  RPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDI 151

Query: 96  IQRD------RPTIV----SELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSG 145
           I  D       P  V    S  S  ++ K   G   +V++T DG   ++G  + G+LG G
Sbjct: 152 IDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQG 211

Query: 146 ----SIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDN 201
               S +  I+ +P++     +   A GAD    ++      +   G  Q GQLG  T  
Sbjct: 212 SYKNSQKTSIQFTPLKVPKKAIVQLAAGADH--LIALTNEGKVYGWGSNQKGQLGRPTSE 269

Query: 202 EYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRL 261
                             P AI       I  VACG +H++A+D  G +Y WG   +G+L
Sbjct: 270 RLKLV--------VLVGDPFAIRN-----IKYVACGKDHSLALDEDGEIYAWGVNIFGQL 316

Query: 262 GHREQKDEWVPRRVDVFQRNNVLPPEAV----ISAGSVNSSCTAGGGQLYMWGK-----L 312
           G                + N       V    ISAG  +S      G LY +G+     L
Sbjct: 317 GA----GSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL 372

Query: 313 KNNGDDWMYPKPLMDLSGWNLRC-MDSGNMHHFVGADS-SCISWGHAQYGELGYGPYGQK 370
               +  +       LS       +  G  H+    D  S  SWG  ++G LG GP    
Sbjct: 373 GIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEAD 432

Query: 371 SSAMPKKV--DILEGMHVISVACGYGHSLV 398
               P  +   +L G ++I    G   S++
Sbjct: 433 VLV-PTLIRQPLLSGHNIILAGYGNQFSVI 461

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional Back     alignment and domain information
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Back     alignment and domain information
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754) Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 539
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.96
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.89
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.89
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.27
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.23
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.09
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.07
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.97
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.86
KOG0315311 consensus G-protein beta subunit-like protein (con 95.79
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.71
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 95.1
KOG3669705 consensus Uncharacterized conserved protein, conta 93.73
KOG3669 705 consensus Uncharacterized conserved protein, conta 91.96
PF0217813 AT_hook: AT hook motif; InterPro: IPR017956 AT hoo 91.26
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 90.52
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 90.33
KOG0646476 consensus WD40 repeat protein [General function pr 88.0
smart0038426 AT_hook DNA binding domain with preference for A/T 83.71
KOG4693392 consensus Uncharacterized conserved protein, conta 83.13
KOG1274 933 consensus WD40 repeat protein [General function pr 81.89
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 81.4
KOG4693392 consensus Uncharacterized conserved protein, conta 80.25
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=6.3e-68  Score=487.19  Aligned_cols=388  Identities=72%  Similarity=1.238  Sum_probs=367.7

Q ss_pred             ccCCCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCC
Q 009248           13 ETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGH   92 (539)
Q Consensus        13 ~~~~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~   92 (539)
                      +...+..|+++.+|.-.+.+.|.....+..++..|.++..+.+++|+.|+.||...|+++|+-+|++|+||.|..||||+
T Consensus        13 ~s~e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGh   92 (443)
T KOG1427|consen   13 ESSEEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGH   92 (443)
T ss_pred             hhhhcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCc
Confidence            34447899999999999999999887777789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeecc-CceEEEEeCCC
Q 009248           93 GDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLV-SEVTATACGAD  171 (539)
Q Consensus        93 g~~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~-~~i~~ia~G~~  171 (539)
                      ++...+..|+.|+.|...+|++.+||++||++||++|.||+||.|.+||||++...+.+..+|.++.. +.|+.|+||..
T Consensus        93 gD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~  172 (443)
T KOG1427|consen   93 GDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGAD  172 (443)
T ss_pred             cchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccc
Confidence            99999999999999999999999999999999999999999999999999999988877777666654 45999999999


Q ss_pred             eeEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCCCeeEEEccCCcEE
Q 009248          172 FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVY  251 (539)
Q Consensus       172 ~s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~~hs~alt~~G~vy  251 (539)
                      |+++|+ ..+ .|.++|...|||||++....++.+++.+.+.|+.++.|..|..+.+.+|+++|||.+|++|++.+++||
T Consensus       173 ftv~l~-~~~-si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVy  250 (443)
T KOG1427|consen  173 FTVWLS-STE-SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVY  250 (443)
T ss_pred             eEEEee-ccc-ceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEE
Confidence            999999 788 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCCCCCCccceeeeccCCCC
Q 009248          252 TWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGW  331 (539)
Q Consensus       252 ~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~~~~~~~~P~~v~~l~~~  331 (539)
                      +||.+.||.||+..+++...|++|..|......++  .+.||+.+++++.+-|.||+||.+.+.+..+++|.++..|+++
T Consensus       251 sWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~--~~~~g~t~Sl~v~e~G~Lf~~g~~k~~ge~~mypkP~~dlsgw  328 (443)
T KOG1427|consen  251 SWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPP--NAILGYTGSLNVAEGGQLFMWGKIKNNGEDWMYPKPMMDLSGW  328 (443)
T ss_pred             EeccccccccccccchhhHHHHHHHHhcCCCCCCc--ceeeecccceeecccceeEEeeccccCcccccCCCchhhcCCc
Confidence            99999999999999999999999999988766543  7899999999999999999999999999999999999999999


Q ss_pred             cEEEEEcCCcEEEEEeCCCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCCc
Q 009248          332 NLRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTN  404 (539)
Q Consensus       332 ~i~~i~~G~~h~~~lt~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g~  404 (539)
                      ++..+.|+..|.++-.|..+..||...+|.++.++..+.+...|.+++.|.+.+|.+|+||+.|+++|+++-.
T Consensus       329 nl~~~~~~~~h~~v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~t~  401 (443)
T KOG1427|consen  329 NLRWMDSGSMHHFVGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRTD  401 (443)
T ss_pred             cCCCcCccceeeeecccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEcccc
Confidence            9999999999999999999999999999999988888999999999999999999999999999999998765

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-31
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-31
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-31
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-31
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 1e-22
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 4e-31
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-10
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 5e-10
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 5e-10
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 2e-07
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 2e-06
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 9e-10
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-06
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-04
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/357 (31%), Positives = 171/357 (47%), Gaps = 33/357 (9%)
Query: 58  IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA 117
           +  ++AG  + H VA+       +WGR E GQLGHGD   R  PT +S L  ++I     
Sbjct: 18  VLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTC 75
Query: 118 GRSHTVVVTEDGNSL-AFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVW 175
           G  HTV  ++ G  + ++GW   G+LG G+  +   P P++ L    +   ACG D    
Sbjct: 76  GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG-DSHCL 134
Query: 176 LSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVA 235
             ++EG  + + G  Q GQLG G     +T+DS V         P+ I A  G  I  VA
Sbjct: 135 AVTMEG-EVQSWGRNQNGQLGLG-----DTEDSLV---------PQKIQAFEGIRIKMVA 179
Query: 236 CGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295
            G  HT AV   G +Y WG+G YG LG  ++ D  VP RV       +    ++++ G  
Sbjct: 180 AGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM----SMVACGWR 235
Query: 296 NSSCTAGGGQLYMWGKLK----NNGD--DWMYPKPLMDLSGWNLRCMDSGNMHHF-VGAD 348
           ++   +  G LY +G  K     +GD  D + P  L  LS   +  +  G  H   + +D
Sbjct: 236 HTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSD 295
Query: 349 SSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNV 405
                WG  ++G++G G    + S  P +V   +   V+ V+CG+ H+L + +R NV
Sbjct: 296 GKLYGWGWNKFGQVGVGNNLDQCS--PVQVRFPDDQKVVQVSCGWRHTLAVTERNNV 350
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query539
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-81
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-64
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-61
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-58
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-74
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 7e-64
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-26
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-17
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-68
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-64
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-37
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-63
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-61
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-44
3mvd_K423 Regulator of chromosome condensation; protein-DNA 4e-37
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-53
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-46
3of7_A 473 Regulator of chromosome condensation; beta-propell 7e-15
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-26
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  257 bits (659), Expect = 7e-81
 Identities = 105/369 (28%), Positives = 165/369 (44%), Gaps = 33/369 (8%)

Query: 46  SPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVS 105
                       +  ++AG  + H VA+       +WGR E GQLGHGD   R  PT +S
Sbjct: 6   MAADEVTAPPRKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLS 63

Query: 106 ELSKYKIKKAGAGRSHTVVVTEDGNSL-AFGWNKHGQLGSGSIRNEIEPSPVRCLVSE-V 163
            L  ++I     G  HTV  ++ G  + ++GW   G+LG G+  +   P P++ L    +
Sbjct: 64  ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRI 123

Query: 164 TATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAI 223
              ACG    + ++  EG  + + G  Q GQLG G   +                 P+ I
Sbjct: 124 KQIACGDSHCLAVTM-EG-EVQSWGRNQNGQLGLGDTEDSLV--------------PQKI 167

Query: 224 AALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNV 283
            A  G  I  VA G  HT AV   G +Y WG+G YG LG  ++ D  VP RV       +
Sbjct: 168 QAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKM 227

Query: 284 LPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYPKPLMDLSGWNLRCMD 337
               ++++ G  ++   +  G LY +G  K       + +D + P  L  LS   +  + 
Sbjct: 228 ----SMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQIS 283

Query: 338 SGNMHHF-VGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHS 396
            G  H   + +D     WG  ++G++G G    + S  P +V   +   V+ V+CG+ H+
Sbjct: 284 GGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS--PVQVRFPDDQKVVQVSCGWRHT 341

Query: 397 LVIVDRTNV 405
           L + +R NV
Sbjct: 342 LAVTERNNV 350
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.38
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 94.71
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 94.63
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 94.53
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.24
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 94.05
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 93.24
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 93.19
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 93.18
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 93.17
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 93.03
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 92.63
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 90.85
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 89.89
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 88.32
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 87.91
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 87.55
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 86.99
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 86.57
1b34_A119 Protein (small nuclear ribonucleoprotein SM D1); s 86.43
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 85.94
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 85.36
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 85.31
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 84.76
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 83.38
2xyi_A430 Probable histone-binding protein CAF1; transcripti 83.36
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 82.87
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 82.31
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 82.3
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 81.87
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 81.11
3jro_A 753 Fusion protein of protein transport protein SEC13 80.82
3jro_A 753 Fusion protein of protein transport protein SEC13 80.56
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 80.16
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 80.14
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.6e-68  Score=551.00  Aligned_cols=361  Identities=26%  Similarity=0.484  Sum_probs=317.2

Q ss_pred             CCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCCC
Q 009248           16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK   95 (539)
Q Consensus        16 ~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~~   95 (539)
                      ..+||+||+||.|.+||||.+.   ......|.++..+...+|++|++|  ..|+++|+++|+||+||.|.+||||++..
T Consensus        16 l~~~G~v~~wG~n~~GqLG~~~---~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~   90 (389)
T 3kci_A           16 FQGSGTIYGWGHNHRGQLGGIE---GAKVKVPTPCEALATLRPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGT   90 (389)
T ss_dssp             -----CEEEEEECTTSTTSSCS---CSEEEEEEECHHHHHTCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSS
T ss_pred             ECCCCeEEEeeCCCCccCCCCc---CccccCCEecccccCCceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCc
Confidence            4799999999999999999875   245667888887777889999955  99999999999999999999999999998


Q ss_pred             CCcccceEeccCCCC--cEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcccccceeeccC-ceEEEEeCCCe
Q 009248           96 IQRDRPTIVSELSKY--KIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADF  172 (539)
Q Consensus        96 ~~~~~P~~v~~~~~~--~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~~~~~~~~~~-~i~~ia~G~~~  172 (539)
                      .....|.+++.+...  ++++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.. +|++|+||..|
T Consensus        91 ~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~h  170 (389)
T 3kci_A           91 ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAH  170 (389)
T ss_dssp             CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSE
T ss_pred             CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCe
Confidence            888899999987765  457899999999999999999999999999999998877766766665543 59999999999


Q ss_pred             eEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeecccCCCeEEEEEeCC--CeeEEEccCCcE
Q 009248          173 TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYV  250 (539)
Q Consensus       173 s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~I~~Ia~G~--~hs~alt~~G~v  250 (539)
                      +++|+ .+| +||+||.|.+||||++....              ...|..+..+.+.+|++|+||.  .|+++|+++|+|
T Consensus       171 s~alt-~~G-~v~~wG~n~~GqLG~~~~~~--------------~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v  234 (389)
T 3kci_A          171 SACVT-AAG-DLYTWGKGRYGRLGHSDSED--------------QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTV  234 (389)
T ss_dssp             EEEEE-TTS-CEEEEECCGGGTTCSSSCCC--------------EEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEE
T ss_pred             EEEEe-CCC-eEEEeCCCCCCCcCCCCCcc--------------cccceEecccCCCeEEEEEEcCCCcEEEEEccCCEE
Confidence            99999 899 99999999999999987642              4568888888888999999995  899999999999


Q ss_pred             EEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCC------CCCCccceee
Q 009248          251 YTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYPKP  324 (539)
Q Consensus       251 y~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~------~~~~~~~P~~  324 (539)
                      |+||.|.+||||.+.......|.+|..+...    .|++|+||..|+++|+++|+||+||.|..      .......|.+
T Consensus       235 ~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~----~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~  310 (389)
T 3kci_A          235 WSWGDGDYGKLGRGGSDGCKVPMKIDSLTGL----GVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQ  310 (389)
T ss_dssp             EEEECCGGGTTSSSSCCCEEEEEECGGGTTS----CEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEE
T ss_pred             EEEeCCCCCCCCCCCCCCccccEEecccCCC----cEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeE
Confidence            9999999999999988888899999877654    35799999999999999999999999862      2345677999


Q ss_pred             eccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeeccCCCCEEEEEEecCCceEEEEcCC
Q 009248          325 LMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRT  403 (539)
Q Consensus       325 v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~~l~~~~v~~va~G~~ht~~l~~~g  403 (539)
                      +..+.+.+|++|+||.+|+++++ +|+||+||+|.+||||.+..  .....|++|..+.+.+|++|+||.+||++|++++
T Consensus       311 v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~~  388 (389)
T 3kci_A          311 VQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTT--NAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK  388 (389)
T ss_dssp             CGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSC--CCEEEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred             eccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCC--CCccCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence            99999889999999999999999 99999999999999999987  6678899999999999999999999999998764
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 539
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-30
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-25
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-13
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-13
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 6e-05
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 2e-30
 Identities = 76/390 (19%), Positives = 136/390 (34%), Gaps = 16/390 (4%)

Query: 20  GELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRC 79
           G +L  G      +G       G  V   +   LV +    V A     H V +   G+ 
Sbjct: 15  GLVLTLGQGDVGQLG------LGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQV 68

Query: 80  YTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKH 139
           Y++G N+ G LG    ++           + K+ +  AG SHT  +T+DG    +G  + 
Sbjct: 69  YSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRD 128

Query: 140 GQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGT 199
                G +    +      +  +V      +     +       +   G  + GQLG   
Sbjct: 129 NNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVP 188

Query: 200 DNEYNTKDSSV--KLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGG 257
           +   N        +L        ++  +          CG   T A+  +G+VY +G   
Sbjct: 189 ELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSN 248

Query: 258 YGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMW-----GKL 312
           Y +LG    +  ++P+ +  F+ +         S G  ++ C    G+ Y       G+L
Sbjct: 249 YHQLGTPGTESCFIPQNLTSFKNSTK--SWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 306

Query: 313 KNNGDDWMYPKPLMDLSGWNLRCMDSGNMH-HFVGADSSCISWGHAQYGELGYGPYGQKS 371
                      P +      +  +  G    + V  D    +WG     +LG G      
Sbjct: 307 GLGEGAEEKSIPTLISRLPAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAW 366

Query: 372 SAMPKKVDILEGMHVISVACGYGHSLVIVD 401
           S +      LE   V+SV+ G  H++++V 
Sbjct: 367 SPVEMMGKQLENRVVLSVSSGGQHTVLLVK 396
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query539
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.77
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.91
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 84.48
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-59  Score=479.14  Aligned_cols=373  Identities=21%  Similarity=0.324  Sum_probs=300.0

Q ss_pred             CCCCCceEEEecCCCCCCCCCCCCCCCCCccCCeEecCCCCCCeEEEEEeCCCcEEEEEecCCcEEEEeCCCCCccCCCC
Q 009248           15 GKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGD   94 (539)
Q Consensus        15 ~~~~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~i~~~~~~~i~~v~~gcG~~h~~~lt~~G~vy~wG~n~~GqLG~g~   94 (539)
                      -+.++|+||+||.|.+||||++..  ......|.+|..+.  +|++|+  ||.+|++||+++|+||+||.|.+||||++.
T Consensus        10 ~~~~~G~vy~wG~n~~GqLG~g~~--~~~~~~P~~v~~~~--~i~~ia--~G~~h~~al~~~G~vy~wG~n~~GQLG~g~   83 (401)
T d1a12a_          10 HSTEPGLVLTLGQGDVGQLGLGEN--VMERKKPALVSIPE--DVVQAE--AGGMHTVCLSKSGQVYSFGCNDEGALGRDT   83 (401)
T ss_dssp             CCCCCBEEEEEEECTTSTTCSCTT--CCEEEEEEEECCSS--CEEEEE--ECSSEEEEEETTSCEEEEECCTTSTTCSCC
T ss_pred             EECCCCEEEEEeCCCCCCCCCCCC--CceeccCEEeCCCC--CeEEEE--eCCCEEEEEeCCCEEEEEeCCCCCCCCccc
Confidence            368999999999999999999853  23477888888665  699999  559999999999999999999999999998


Q ss_pred             CCCcccceEeccCCCCcEEEEEeCCceeEEEecCCCEEEeecCCCCCCCCCCCCCcc--cccceeeccCceEEEEeCCCe
Q 009248           95 KIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEI--EPSPVRCLVSEVTATACGADF  172 (539)
Q Consensus        95 ~~~~~~P~~v~~~~~~~I~~Ia~G~~ht~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~--~~~~~~~~~~~i~~ia~G~~~  172 (539)
                      ......|.++......+|++|+||..|+++++++|+||+||.+...+++........  .+.........|+.|+||..|
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~  163 (401)
T d1a12a_          84 SVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDH  163 (401)
T ss_dssp             CSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSE
T ss_pred             ccccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecccc
Confidence            877777777666667789999999999999999999999999877665543332222  112222233469999999999


Q ss_pred             eEEEEccCCceEEecCCCCccccCCCCCCCCcccCCcccccccccCCceeec-----ccCCCeEEEEEeCCCeeEEEccC
Q 009248          173 TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA-----ALAGETIVKVACGTNHTVAVDSK  247 (539)
Q Consensus       173 s~~lt~~~G~~vy~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~p~~i~-----~~~~~~I~~Ia~G~~hs~alt~~  247 (539)
                      +++++ .+| .+|+||.|.+||||............   ........|..+.     .....+|++|+||.+|+++|+.+
T Consensus       164 ~~~~~-~~g-~~~~~G~n~~gqlg~~~~~~~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~  238 (401)
T d1a12a_         164 LVMLT-ADG-DLYTLGCGEQGQLGRVPELFANRGGR---QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE  238 (401)
T ss_dssp             EEEEE-TTS-CEEEEECCTTSTTCSCGGGTSSSCGG---GGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETT
T ss_pred             eeeee-cCC-cccccccCCccccCCCCccccccCCc---cccccccccceeeccccCCCCCceEEEEEecCCeEEEEecC
Confidence            99999 888 99999999999999876543222111   1111122233222     23345799999999999999999


Q ss_pred             CcEEEEecCCCCCCCCCCCCCccccEEecccccCCCCCCceEEEecCCceEEEeCCCcEEEecCCCC-------CCCCcc
Q 009248          248 GYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN-------NGDDWM  320 (539)
Q Consensus       248 G~vy~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~~~~~v~~I~~G~~~s~~lt~~G~vy~wG~n~~-------~~~~~~  320 (539)
                      |.||+||.|.+|+||.........+..+..+...  ...++.|++|..|+++|+.+|+||+||.+..       ......
T Consensus       239 g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~--~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~  316 (401)
T d1a12a_         239 GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS--TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS  316 (401)
T ss_dssp             CCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCT--TCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEE
T ss_pred             CeEeeecccceecccccccccceecccccccccc--ceeEEEEeeeccceeeeccCCCEEEecccccCccCCCccccccc
Confidence            9999999999999999888777777777655543  2347899999999999999999999999763       234466


Q ss_pred             ceeeeccCCCCcEEEEEcCCcEEEEEe-CCCEEEEeCCCCCccCCCCCCCCCcCCCeeec--cCCCCEEEEEEecCCceE
Q 009248          321 YPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVD--ILEGMHVISVACGYGHSL  397 (539)
Q Consensus       321 ~P~~v~~l~~~~i~~i~~G~~h~~~lt-~G~vy~wG~n~~GqLG~g~~~~~~~~~P~~v~--~l~~~~v~~va~G~~ht~  397 (539)
                      +|..+..+.  .|++|+||.+|++||+ +|+||+||+|.+||||+|+.  ..+..|++|.  .+.+.+|++|+||.+||+
T Consensus       317 ~P~~i~~~~--~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~--~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~  392 (401)
T d1a12a_         317 IPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD--EDAWSPVEMMGKQLENRVVLSVSSGGQHTV  392 (401)
T ss_dssp             EEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC--SCEEEEEECCSTTTTTEEEEEEEECSSEEE
T ss_pred             CCEEcCCCC--CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCC--CCEecCEEeeccCCCCCEEEEEEEccceEE
Confidence            788887765  6999999999999999 99999999999999999987  5566677664  456778999999999999


Q ss_pred             EEEcCCc
Q 009248          398 VIVDRTN  404 (539)
Q Consensus       398 ~l~~~g~  404 (539)
                      +|++|++
T Consensus       393 ~l~~d~~  399 (401)
T d1a12a_         393 LLVKDKE  399 (401)
T ss_dssp             EEEEECS
T ss_pred             EEEECCc
Confidence            9999986
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure