Citrus Sinensis ID: 009256
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 539 | 2.2.26 [Sep-21-2011] | |||||||
| Q9ZPI6 | 721 | Peroxisomal fatty acid be | yes | no | 0.983 | 0.735 | 0.767 | 0.0 | |
| Q8W1L6 | 726 | Peroxisomal fatty acid be | yes | no | 0.985 | 0.731 | 0.745 | 0.0 | |
| Q39659 | 725 | Glyoxysomal fatty acid be | N/A | no | 0.987 | 0.733 | 0.621 | 0.0 | |
| O49809 | 725 | Glyoxysomal fatty acid be | N/A | no | 0.979 | 0.728 | 0.625 | 0.0 | |
| Q9ZPI5 | 725 | Peroxisomal fatty acid be | no | no | 0.977 | 0.726 | 0.627 | 0.0 | |
| Q6NYL3 | 718 | Peroxisomal bifunctional | yes | no | 0.936 | 0.703 | 0.380 | 1e-82 | |
| A8A2L0 | 714 | Fatty acid oxidation comp | yes | no | 0.970 | 0.732 | 0.346 | 6e-81 | |
| Q08426 | 723 | Peroxisomal bifunctional | yes | no | 0.933 | 0.695 | 0.355 | 7e-81 | |
| Q5R5M8 | 723 | Peroxisomal bifunctional | yes | no | 0.933 | 0.695 | 0.355 | 1e-80 | |
| Q8FFG4 | 714 | Fatty acid oxidation comp | yes | no | 0.964 | 0.728 | 0.342 | 5e-76 |
| >sp|Q9ZPI6|AIM1_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 OS=Arabidopsis thaliana GN=AIM1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/530 (76%), Positives = 476/530 (89%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A R+DVKAIVL GN GRFSGGF
Sbjct: 7 VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
DINVFQ+VH GD+SLMP+VSVELV NL+ED +KP+VAAVEGLALGGGLELAM CHAR+A
Sbjct: 67 DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V
Sbjct: 127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186
Query: 186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
++L SR WALDIA RKP+++SLHRTDK+GSLSEAR +LK +R AKK APNMPQH
Sbjct: 187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246
Query: 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct: 247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306
Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct: 307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366
Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
QDKA AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct: 367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM VGK IKKVPVV
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486
Query: 486 VGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEG 535
VGNC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQ G
Sbjct: 487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLG 536
|
Involved in peroxisomal fatty acid beta-oxidation. Required for wound-induced jasmonate biosynthesis. Possesses enoyl-CoA hydratase activity against short chain substrates (C4-C6) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C16). Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q8W1L6|MFP_ORYSJ Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/531 (74%), Positives = 458/531 (86%)
Query: 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
A RVTMEVG DGVA++T+ NPPVNAL I+ GLK+K+ EA RDDVKAIVLTG GG+F
Sbjct: 4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63
Query: 63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
GGFDINVF +VH G+VSLMPDVSVELV NL+E KKP VAA++GLALGGGLEL MGCHA
Sbjct: 64 GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct: 124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183
Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
+ + +EL+K+SRLWAL+IA RKPWIRSL RTD+LGSLSEAR VL AR QAKK A N+P
Sbjct: 184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243
Query: 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
QHQACLDV+EEG++ GG++GVLKEAKVFKELV+ TS+ LVH FFAQR T+KVP VTD+
Sbjct: 244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303
Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
LKPR +RKVAVIGGGLMGSGIATA +++N VVLKEVN ++L +G K I AN+ GLV RG
Sbjct: 304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363
Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct: 364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423
Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+TVGK+IKKV
Sbjct: 424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483
Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
PVVVGNCTGFAVNR FFPY+Q + LLVS+G+DVFRID I SFG+P+GPFQ
Sbjct: 484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQ 534
|
Multifunctional enzyme involved in fatty acid beta-oxidation. Also binds to RNA and microtubules. Possible role in subcellular mRNA localization and RNA-cytoskeleton interactions. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q39659|MFPA_CUCSA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/533 (62%), Positives = 421/533 (78%), Gaps = 1/533 (0%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
A R MEVG DGVAIIT+INPPVN+L+ ++ L+D +E+A RDDVKAIV+TG G+F
Sbjct: 5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64
Query: 62 SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
SGGFDI F + G G+ + ++S+E++ ++ E +KP VAA++GLALGGGLE+AM C
Sbjct: 65 SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARI+ P QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I +E LGL+
Sbjct: 125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V EEL+ +R WAL+I RR+PW+ SLHRTDKL SL+EAR++ LAR QAKK PN
Sbjct: 185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+ AC+D +E G+V G +G+ KEA+ F+ L+ DT + L+H+FFAQR+T+KVP VTD
Sbjct: 245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
+GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L GI + AN++ V
Sbjct: 305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+G +T +K ++ +LKGVL+Y FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct: 365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDL ++GE+ S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+ VGK IK
Sbjct: 425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
K PVVVGNCTGFAVNR FFPYSQ+A LL GVD ++ID AI FG+P+GPF+
Sbjct: 485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFR 537
|
Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|O49809|MFPA_BRANA Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2 | Back alignment and function description |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/529 (62%), Positives = 417/529 (78%), Gaps = 1/529 (0%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
T+EVG DGVA+ITLINPPVN+L+ ++ LK +EEA SR+DVKAIV+TG G+FSGGF
Sbjct: 9 TTIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGF 68
Query: 66 DINVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
DI+ F ++ G + +S++++ +L+E KKP VAA++GLALGGGLEL+M CHARI
Sbjct: 69 DISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARI 128
Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
+AP QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG LGLIDAVV
Sbjct: 129 SAPGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVV 188
Query: 185 TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
ELL +R WALDIA RRKPW+ S+ +TDKL L EARE+LK A+ Q ++ APNM
Sbjct: 189 PPAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHP 248
Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
CL+ +E GIV G +G+ KEA+V E++ LDT++GL+HVFF+QR T+KVP VTD GL
Sbjct: 249 LMCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLV 308
Query: 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
PR + KVA+IGGGLMGSGIATA IL+N V+LKEVN ++L GI ++AN++ V +GK+
Sbjct: 309 PRKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKM 368
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
+++K + +LKG LDY F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTS
Sbjct: 369 SKEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTS 428
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
TIDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT TSAQVI+DL+ VGK I+K PV
Sbjct: 429 TIDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPV 488
Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
VVGNCTGFAVNR FFPY+Q+A LV G D + ID A+ FG+P+GPF+
Sbjct: 489 VVGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFR 537
|
Brassica napus (taxid: 3708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q9ZPI5|MFP2_ARATH Peroxisomal fatty acid beta-oxidation multifunctional protein MFP2 OS=Arabidopsis thaliana GN=MFP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/532 (62%), Positives = 416/532 (78%), Gaps = 5/532 (0%)
Query: 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+ MEVG DGVA+ITLINPPVN+L+ ++ LK +EEA SR+DVKAIV+TG GRFSGG
Sbjct: 8 KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67
Query: 65 FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
FDI+ F ++ G+V P +S++++ +L+E +KP VAA++GLALGGGLELAM CH
Sbjct: 68 FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
ARI+AP QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
AVV EL+ +R WALDI RRKPW+ S+ +TDKL L EARE+L A+ Q K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245
Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
CLD IE GIV G +G+ KEA+V ++V LDT++GL+HVFF+QR T+KVP VTD
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305
Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
GL PR ++KVA+IGGGLMGSGIATA IL+N V+LKEVN ++L GI ++AN++ V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
G ++Q+K + +LKG LDY F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT TSAQVI+DL+ VGK IKK
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485
Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
PVVVGNCTGFAVNR FFPY+Q+A LV G D + ID AI FG+P+GPF+
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFR 537
|
Involved in peroxisomal fatty acid beta-oxidation during seed germination. Possesses enoyl-CoA hydratase activity against long chain substrates (C14-C18) and 3-hydroxyacyl-CoA dehydrogenase activity against chains of variable sizes (C6-C18). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6NYL3|ECHP_DANRE Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (787), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 202/531 (38%), Positives = 296/531 (55%), Gaps = 26/531 (4%)
Query: 9 EVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDIN 68
E+ VA+ITL NPPVNAL+ + + E A S V A+V+ G GRF GG DI
Sbjct: 5 ELVKRSVALITLTNPPVNALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIR 64
Query: 69 VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
F AG + P V + ++ IE +KP+VAA+EG+ALGGG ELA+ CH RIA K
Sbjct: 65 EF-----AGPLRGPPLVPL---LDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYK 116
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
+LGLPE+TLG++P GGTQRLPRL+G+ A+E++ + ++++E KLG++D V T +
Sbjct: 117 ARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQV-TEQN 175
Query: 189 LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA--REVLKLARLQAKKTAPNMPQHQA 246
+V+ +AL KP S R L + + + A +Q +K A + A
Sbjct: 176 TCEVALEFALKAVG--KPL--SSRRLSMLTTPCPPGLDGIFEAATMQVQKKARGVMAPLA 231
Query: 247 CLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK--VPNVTDIG- 302
C+ + + YS G+ +E ++ L ++ L + FFAQR K +P+
Sbjct: 232 CVQAVRAATLP--YSEGIKREGELMATLFSSGQAQALQYSFFAQRTAEKWTLPSGAQWNN 289
Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
KPR ++ AVIG G MG GI + L + + + V SE L ++T V G++ R
Sbjct: 290 SKPREIQSAAVIGLGTMGRGIVVS--LARVGISVIAVESEKKL--LETGRQMVIGMLER- 344
Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
+ + +L +LK L + KDVD+VIEAV E + LK++IF EL + C P +L +N
Sbjct: 345 DAKRRGVSASLNLLKFSLSLQDLKDVDLVIEAVFEDMALKKQIFRELSRVCRPATLLCSN 404
Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKV 482
TS +D++ + + T + G HFFSPAHVM LLE+V R+S + I M++GK + KV
Sbjct: 405 TSGLDVDALADVTDRPQLVAGMHFFSPAHVMKLLEVVCGPRSSKEAIATAMSLGKRMGKV 464
Query: 483 PVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
V VGNC GF NR PY + A L+ G +ID A+ FG +G F+
Sbjct: 465 SVAVGNCPGFVGNRMLMPYLEQATFLLEEGATPQQIDKALEDFGFAMGVFR 515
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli O9:H4 (strain HS) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 187/539 (34%), Positives = 288/539 (53%), Gaps = 16/539 (2%)
Query: 3 APRVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGG 59
A T+ V D +AIIT+ P +N L + ++ ++ +++ +V ++
Sbjct: 4 ASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPD 63
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G DIN+ A + + +L+ I P++AA+ G LGGGLELA+
Sbjct: 64 NFIAGADINMIGNCKTAQEAEALARQGQQLMAE-IHALPIPVIAAIHGACLGGGLELALA 122
Query: 120 CHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
CH R+ PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L K + +++ KL
Sbjct: 123 CHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKL 182
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAK 235
GL+D VV LL+ A+++A + +P R L +++ G L A + +
Sbjct: 183 GLVDDVVPHSILLEA----AVELAKKDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEH 238
Query: 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295
KT N P + L+V+E G+ G SG EA+ F EL M S+ L +FFA K
Sbjct: 239 KTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGELAMTPQSQALRSIFFASTDVKKD 298
Query: 296 PNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEAN 354
P P + V ++GGGLMG+GIA + V +K++N + + +K
Sbjct: 299 PGSD---APPAPLNSVGILGGGLMGAGIAYVTACKAGLPVRIKDINPQGINHALKYSWDQ 355
Query: 355 VRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP 414
+ G V R L + + L ++ G DY F D++IEAV E++ LKQ++ +E+E+ C
Sbjct: 356 LEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCA 415
Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
H I A+NTS++ + + + +++IG HFFSP MPL+EI+ TSAQ I +
Sbjct: 416 AHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVK 475
Query: 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
+ K K P+VV + GF VNR PY A +++ G V ID+A+ FG P+GP Q
Sbjct: 476 LAKKQGKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQ 534
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Escherichia coli O9:H4 (strain HS) (taxid: 331112) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q08426|ECHP_HUMAN Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3 | Back alignment and function description |
|---|
Score = 301 bits (772), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 189/532 (35%), Positives = 292/532 (54%), Gaps = 29/532 (5%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
++ +A+I L NPPVNA++ ++ +K+ ++A +KAIV+ G G+FS G DI F
Sbjct: 8 HNALALIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFS 67
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
G +++ VV+ I+ +KP+VAA++G+A GGGLELA+GCH RIA + Q+
Sbjct: 68 APRTFG-------LTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQV 120
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
GLPE+TLG++PG GTQ LPRL G+ A++++ + I ++E KLG++D VV S EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPVEE 180
Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
++ + R+ + +RR KP I+SL D + SEA +LK+ R P
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDSI--FSEA--LLKMRRQH-----PGCLAQ 230
Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
+AC+ ++ + + G+ KE ++F L+ +R L + FFA+R +K + K
Sbjct: 231 EACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQARALQYAFFAERKANKWSTPSGASWK 290
Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
R V V V+G G MG GI + I V+ + + L K I + + ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
+ + + L + E VD+VIEAV E + LK+++F+EL C P L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSV--KELGGVDLVIEAVFEEMSLKKQVFAELSAVCKPEAFLCT 408
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
NTS +D++ + T +IG HFFSPAHVM LLE++ ++ +S I +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468
Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
+ VVVGNC GF NR PY A L+ G +D + FG +GPF+
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFR 520
|
Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5R5M8|ECHP_PONAB Peroxisomal bifunctional enzyme OS=Pongo abelii GN=EHHADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 189/532 (35%), Positives = 291/532 (54%), Gaps = 29/532 (5%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
++ +A+I L NPPVNA++ ++ +K+ ++A +KAIV+ G G+FS G DI+ F
Sbjct: 8 HNALALIRLRNPPVNAISTALLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIHGFS 67
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
G ++ VV+ I+ +KP+VAA++G+A GGGLELA+GCH RIA + Q+
Sbjct: 68 APRTFG-------FTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHSEAQV 120
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS---EE 188
GLPE+TLG++PG GTQ LPRL+G+ A++++ + I ++E KLG++D VV S EE
Sbjct: 121 GLPEVTLGLLPGARGTQLLPRLIGVPAALDLITSGRHILADEALKLGILDKVVNSDPVEE 180
Query: 189 LLKVS-RLWALDIAARR---KPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244
++ + R+ + +RR KP I+SL D + SEA +LK+ R P
Sbjct: 181 AIRFAQRVSDQPLESRRLCNKP-IQSLPNMDTI--FSEA--LLKMRRQH-----PGCLAQ 230
Query: 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLK 304
+AC+ ++ + + GV KE ++F L +R L + F A+R +K + K
Sbjct: 231 EACVRAVQAAVQYPYEVGVKKEEELFLYLFQSGQARALQYAFLAERKANKWSTPSGASWK 290
Query: 305 ---PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
R V V V+G G MG GI + I V+ + + L K I + + ++
Sbjct: 291 TASARPVSSVGVVGLGTMGRGIVISFARARIPVIAVDSDKNQLATANKMITSVLEKEASK 350
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
+ + + L + E VD+VIEAV E + LK+++F+EL C P L T
Sbjct: 351 MQQSGHPWSGPKPRLTSSM--KELGGVDLVIEAVFEEMSLKKQVFAELSAICKPEAFLCT 408
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
NTS +D++ + T +IG HFFSPAHVM LLE++ ++ +S I +M + K IKK
Sbjct: 409 NTSALDVDEIASSTDRPHLVIGTHFFSPAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKK 468
Query: 482 VPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
+ VVVGNC GF NR PY A L+ G +D + FG +GPF+
Sbjct: 469 IGVVVGNCFGFVGNRMLNPYYNQAYFLLEEGSKPEEVDQVLEEFGFKMGPFR 520
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q8FFG4|FADJ_ECOL6 Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fadJ PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 183/534 (34%), Positives = 282/534 (52%), Gaps = 14/534 (2%)
Query: 7 TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIV-LTGNGGRFSG 63
T+ V D +A+IT+ P +N L + ++ ++ D++ +V ++ F
Sbjct: 8 TLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKDLRGVVFISAKPDNFIA 67
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G DIN+ A + + +L+ I P++AA+ G LGGGLELA+ CH R
Sbjct: 68 GADINMIANCKTAQEAEALARQGQQLMAE-IHALPVPVIAAIHGACLGGGLELALACHGR 126
Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
+ PKT LGLPE+ LG++PG GGTQRLPRL+G+S A+EM+L K + +++ KLGL+D
Sbjct: 127 VCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVD 186
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL--GSLSEAREVLKLARLQAKKTAP 239
VV LL+ A+++A + +P R L +++ G L A + + +KT
Sbjct: 187 DVVPHSILLEA----AVELAKQDRPSSRPLPVRERILAGPLGRALLFKMVGKKTEQKTQG 242
Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
N P + LDVIE G+ G SG EA+ F EL M S+ L ++FFA K P +
Sbjct: 243 NYPATKRILDVIETGLAQGTSSGYDAEARAFGELAMTPQSQALRNIFFASTEVKKDPG-S 301
Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
D P + G G TA + V +K++N + + +K + G V
Sbjct: 302 DAPPAPLNSVGILGGGLMGGGIAYVTA-CKAGLPVRIKDINPQGINHALKYSWDQLEGKV 360
Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
R L + + L ++ G DY F D++IEAV E++ LKQ++ +E+E+ C H I
Sbjct: 361 RRRHLKASERDKQLALISGTTDYRGFAHRDLIIEAVFENLELKQQMVAEVEQNCAAHTIF 420
Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
A+NTS++ + + + +++IG HFFSP MPL+EI+ TSAQ I + + K
Sbjct: 421 ASNTSSLPIADIAAHAARPEQVIGLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQ 480
Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
K P+VV + GF VNR PY A +++ G V ID+A+ FG P+GP Q
Sbjct: 481 GKTPIVVRDKAGFYVNRILAPYINEAIRMLTEGERVEHIDAALVKFGFPVGPIQ 534
|
Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities. Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 539 | ||||||
| 224142159 | 726 | predicted protein [Populus trichocarpa] | 0.988 | 0.734 | 0.853 | 0.0 | |
| 225445200 | 724 | PREDICTED: peroxisomal fatty acid beta-o | 0.988 | 0.736 | 0.806 | 0.0 | |
| 315419009 | 721 | MFP [Gossypium hirsutum] | 0.988 | 0.739 | 0.829 | 0.0 | |
| 406365505 | 724 | cinnamoyl-CoA hydratase-dehydrogenase [P | 0.988 | 0.736 | 0.810 | 0.0 | |
| 449443155 | 724 | PREDICTED: peroxisomal fatty acid beta-o | 0.988 | 0.736 | 0.787 | 0.0 | |
| 255546439 | 724 | 3-hydroxyacyl-CoA dehyrogenase, putative | 0.988 | 0.736 | 0.808 | 0.0 | |
| 449515444 | 719 | PREDICTED: peroxisomal fatty acid beta-o | 0.979 | 0.734 | 0.780 | 0.0 | |
| 356520511 | 724 | PREDICTED: peroxisomal fatty acid beta-o | 0.988 | 0.736 | 0.793 | 0.0 | |
| 357500631 | 722 | Peroxisomal fatty acid beta-oxidation mu | 0.985 | 0.735 | 0.789 | 0.0 | |
| 297799088 | 721 | hypothetical protein ARALYDRAFT_491857 [ | 0.983 | 0.735 | 0.769 | 0.0 |
| >gi|224142159|ref|XP_002324426.1| predicted protein [Populus trichocarpa] gi|222865860|gb|EEF02991.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/533 (85%), Positives = 497/533 (93%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P VTMEVGNDGVA++TLINPPVNALAIPI+AGLK+KF+EAT R+DVKA+VLTG GGR
Sbjct: 1 MAKPHVTMEVGNDGVAVVTLINPPVNALAIPIIAGLKEKFDEATRRNDVKALVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVFQKVH GD+SLMPDVSVELVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61 FSGGFDINVFQKVHATGDISLMPDVSVELVVNTIEDCKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL+GLSKAIE+MLLSK I SEEG KLGLI
Sbjct: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLLGLSKAIEIMLLSKPIMSEEGKKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V S+ELLKVSR WALDI+ RRKPW+RSLHRTDK+GSLSEAREVLK AR QAKK APN
Sbjct: 181 DAIVPSQELLKVSRQWALDISERRKPWLRSLHRTDKIGSLSEAREVLKAARQQAKKIAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQHQA LDV+EEGI+HGGY+GVLKEAKVFKELV+ +TS+GLVHVFFAQR TSK+P VTD
Sbjct: 241 VPQHQALLDVMEEGIIHGGYNGVLKEAKVFKELVLTETSKGLVHVFFAQRMTSKIPKVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
+GLKPR ++KVAVIGGGLMGSGIATA I++NI+VVLKE+NSEYL KG KTIEANVR LVT
Sbjct: 301 VGLKPRHIKKVAVIGGGLMGSGIATALIVSNIHVVLKEINSEYLQKGTKTIEANVRSLVT 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGKLT+DKA+ AL MLKG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RGKLTRDKADKALSMLKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKICPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAH+MPLLEIVRTE+TSAQ ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHIMPLLEIVRTEKTSAQAILDLMTVGKTIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
KVPVVVGNCTGFAVNRAFFPY+QSA +LV LGVDVFRID I SFGLP+GP+Q
Sbjct: 481 KVPVVVGNCTGFAVNRAFFPYTQSALILVHLGVDVFRIDKLISSFGLPMGPYQ 533
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445200|ref|XP_002284283.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1 [Vitis vinifera] gi|297738804|emb|CBI28049.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 896 bits (2316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/533 (80%), Positives = 487/533 (91%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
M+ VTMEVGNDGVA+IT+ NPPVNALA+ I+AGLK+K+ EA R+DVKAIV+TG GGR
Sbjct: 1 MSKAEVTMEVGNDGVAVITMSNPPVNALALAIIAGLKEKYAEAMRRNDVKAIVVTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVFQKVH D+S +PD S++L+VN +ED KKP VAAVEGLALGGGLE+AM C
Sbjct: 61 FSGGFDINVFQKVHKTADISHLPDASIDLLVNTVEDAKKPSVAAVEGLALGGGLEVAMAC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIAAPKTQLGLPEL+LGV+PGFGGTQRLPRLVGLSKAIEMM LSKSI+SEEG+KLGL+
Sbjct: 121 HARIAAPKTQLGLPELSLGVMPGFGGTQRLPRLVGLSKAIEMMRLSKSISSEEGYKLGLV 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V+SEELLKVSR WALDI +RKPW+RSLH+T+KLGS+SEA ++LK++R QA+KT P+
Sbjct: 181 DAIVSSEELLKVSRRWALDIVDKRKPWVRSLHQTEKLGSVSEALDILKISRQQARKTVPH 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQHQACLDVIEEGIVHGGYSG+LKE KVF +LV+ DT++GL+HVFFAQRATSKVPNVTD
Sbjct: 241 LPQHQACLDVIEEGIVHGGYSGLLKETKVFNKLVLSDTAKGLIHVFFAQRATSKVPNVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR V+KVAVIGGGLMGSGIATA I +NIYVVLKEVNSEYLLKGIKTIEANVRGLVT
Sbjct: 301 IGLKPRNVKKVAVIGGGLMGSGIATALITSNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+GKLTQDKA AL MLKGVLDYSEFKD+DMVIEAVIE++ LKQKIFSE+EK C PHCILA
Sbjct: 361 KGKLTQDKARKALSMLKGVLDYSEFKDIDMVIEAVIENISLKQKIFSEIEKICSPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VGEKTSSQDRIIGAHFFSPAHVMPLLE+VRTE+TSAQVILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGEKTSSQDRIIGAHFFSPAHVMPLLEVVRTEKTSAQVILDLMTVGKAIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
K+PVVVG+CTGFAVNR FFPY+Q A LV+LGVD FRID I +FGLP+GPFQ
Sbjct: 481 KIPVVVGSCTGFAVNRTFFPYAQGAHFLVNLGVDPFRIDWVISNFGLPMGPFQ 533
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|315419009|gb|ADU15551.1| MFP [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/534 (82%), Positives = 489/534 (91%), Gaps = 1/534 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
M+ +VTMEVGNDGVA+IT+ NPPVNALAIPI+ GLK+KF EAT RDDVKAIVLTG GGR
Sbjct: 1 MSQSKVTMEVGNDGVAVITISNPPVNALAIPIIDGLKEKFAEATRRDDVKAIVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVF KVHG GDVS+MPDVSV+LV N +EDCKKPIVAAVEGLALGGGLE AMGC
Sbjct: 61 FSGGFDINVFTKVHGTGDVSIMPDVSVDLVTNAVEDCKKPIVAAVEGLALGGGLEFAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIAAP+TQLGLPEL+LGVIPGFGGTQRLPRLVGLSKAIEMML SK I SEEG KLGLI
Sbjct: 121 HARIAAPRTQLGLPELSLGVIPGFGGTQRLPRLVGLSKAIEMMLSSKPIMSEEGKKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V S+ELLKVS WALD+A RRKPW+RSLHRTDK+GSLSEAREVL++ARLQAKKTAPN
Sbjct: 181 DALVPSKELLKVSCAWALDMAERRKPWLRSLHRTDKIGSLSEAREVLRMARLQAKKTAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQHQ CLDVIEEGIVHGGYSGVLKEAKVFKE+V+ DTSRGLVHVF AQRATSKVPNVTD
Sbjct: 241 LPQHQVCLDVIEEGIVHGGYSGVLKEAKVFKEIVLSDTSRGLVHVFLAQRATSKVPNVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
+GLKPR V+KVA+IGGGLMGSGIATA I+NNI+VVLKEVNSEYLLKGIKT+EANVRGL
Sbjct: 301 VGLKPRQVKKVAIIGGGLMGSGIATALIVNNIFVVLKEVNSEYLLKGIKTVEANVRGLAN 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGK+T+DKA AL MLKGVLDYSEFKDVDMVIEAV+E+V LKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKMTKDKAEKALSMLKGVLDYSEFKDVDMVIEAVVENVALKQKIFSEIEKACPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN++GEK +SQDR++GAHFFSPAH+MPLLE VRT++ S Q+ILDLMTVGK+IK
Sbjct: 421 TNTSTIDLNLIGEKMNSQDRLVGAHFFSPAHLMPLLETVRTQKASPQIILDLMTVGKVIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGLPIGPFQ 533
KVPVVVGNCTGFAVNR FFPY+Q LLVSLGV D +RID I +FG P+GPFQ
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYTQGPHLLVSLGVDDAYRIDRVICNFGFPLGPFQ 534
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|406365505|gb|AFS41246.1| cinnamoyl-CoA hydratase-dehydrogenase [Petunia x hybrida] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/533 (81%), Positives = 481/533 (90%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA +VTMEVG DGVA+IT+ NPPVNALAIPI+ LK+K+ EAT R+DVKAIVLTGNGGR
Sbjct: 1 MAQVKVTMEVGTDGVAVITIFNPPVNALAIPIINALKEKWTEATIRNDVKAIVLTGNGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVFQKVHG GD+S MPDVSV+LVVN +EDCKKP VAA+EGLALGGGLELAMGC
Sbjct: 61 FSGGFDINVFQKVHGTGDISQMPDVSVDLVVNTMEDCKKPAVAAIEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIAAP+ QLGLPEL+LGV+PGFGGTQRLPRL+GLSKA+EMM+ SK I SEEG KLGLI
Sbjct: 121 HARIAAPRAQLGLPELSLGVMPGFGGTQRLPRLIGLSKAVEMMMTSKPIMSEEGKKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V S ELLKVSR WALDIA RRKPW+RSLH+TDK+GSLSEAREVLK+AR Q K+TA N
Sbjct: 181 DAIVPSSELLKVSRQWALDIAERRKPWMRSLHKTDKIGSLSEAREVLKVARQQVKQTAKN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
MPQH AC+DVIEEGI+HGGY+GVLKEAKVFK+LV+ +TS+GLVHVFFAQRATSKVPNVTD
Sbjct: 241 MPQHVACIDVIEEGIIHGGYAGVLKEAKVFKDLVLSETSKGLVHVFFAQRATSKVPNVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR V+KVAVIGGGLMGSGIATA L+N +VVLKE+NSEYL KG+K IEANVRGLV
Sbjct: 301 IGLKPRTVKKVAVIGGGLMGSGIATALALSNTFVVLKEINSEYLQKGMKAIEANVRGLVA 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
R KL QDKA+ AL M+KG LDYS+FKDVDMVIEAVIESVPLKQKIFSE+EK CPPHCILA
Sbjct: 361 RKKLPQDKADKALSMVKGALDYSDFKDVDMVIEAVIESVPLKQKIFSEIEKVCPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
+NTSTIDLNI+GE T S+DRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDLM VGK IK
Sbjct: 421 SNTSTIDLNIIGENTRSKDRIIGAHFFSPAHIMPLLEIVRTEKTSTQAILDLMAVGKAIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
KVPVVVGNCTGFAVNR FFPYSQ A +LV+LGVD +RID+ I SFGLP+GP Q
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYSQGAHILVNLGVDAYRIDAQITSFGLPMGPLQ 533
|
Source: Petunia x hybrida Species: Petunia x hybrida Genus: Petunia Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443155|ref|XP_004139346.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/533 (78%), Positives = 471/533 (88%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P VTMEVGNDGVA+IT+ NPPVNALA + LK KFEEA R+DVKA+VLTG GGR
Sbjct: 1 MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVF+ +H GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+
Sbjct: 61 FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DAVV+ EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
PQ AC+DVIE+GI+HGGYSGVLKE KVF+ELV DT++GLVHVFF+QR SKVPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFSQRLISKVPNVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV
Sbjct: 301 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 361 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 421 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID I +FGLP+GPFQ
Sbjct: 481 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQ 533
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546439|ref|XP_002514279.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] gi|223546735|gb|EEF48233.1| 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/533 (80%), Positives = 480/533 (90%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P VTMEVGNDGVA+I++ NPPVNALA+PI+ GLK+KF EA R DV+AIVLTG GR
Sbjct: 1 MAKPHVTMEVGNDGVAVISMSNPPVNALAVPIIMGLKEKFTEAARRKDVQAIVLTGKNGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDI+V QKVH GD S++PDVSV+LVVN IEDCKKP+VAAVEGLALGGGLELAMGC
Sbjct: 61 FSGGFDISVMQKVHQTGDASILPDVSVDLVVNAIEDCKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARI APKTQLGLPEL+LG+IPGFGGTQRLPRLVGL KAI+MML SK I SEEG KLGL+
Sbjct: 121 HARIVAPKTQLGLPELSLGIIPGFGGTQRLPRLVGLPKAIQMMLTSKPIMSEEGKKLGLV 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
D +V+S+ELLKVSR WALDI RRKPW+RSLH TDKLGSLSEA E+LK AR QAKKTAPN
Sbjct: 181 DVIVSSQELLKVSRQWALDIKERRKPWMRSLHMTDKLGSLSEALELLKAARQQAKKTAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
MPQHQACLDVIE+G+VHGGYSGVLKEAKVFKELV+ DT++ L+HVFFAQR TSKVPNV+D
Sbjct: 241 MPQHQACLDVIEDGVVHGGYSGVLKEAKVFKELVISDTAKSLIHVFFAQRTTSKVPNVSD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR ++KVAVIGGGLMGSGI TA I + IYVVLKE+NSEYLLKGIK +EANVRGLVT
Sbjct: 301 IGLKPRQIKKVAVIGGGLMGSGIITALITSGIYVVLKEINSEYLLKGIKMVEANVRGLVT 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGKL+ DKA+ AL MLKGVLDYS+F+DVDMVIEAVIES+PLKQKIFSE+EKACPPHCILA
Sbjct: 361 RGKLSPDKADKALSMLKGVLDYSDFRDVDMVIEAVIESIPLKQKIFSEIEKACPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VG+KTS+QD IIGAHFFSPAH+MPLLEIVRT++TS Q ILDLMTVGK IK
Sbjct: 421 TNTSTIDLNLVGKKTSAQDCIIGAHFFSPAHIMPLLEIVRTDKTSPQAILDLMTVGKSIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
KV VVVGNCTGFAVNR FFPY+Q A LLV+LGVDVFRID I +FGLP+GP Q
Sbjct: 481 KVSVVVGNCTGFAVNRTFFPYAQGAHLLVNLGVDVFRIDRVICNFGLPMGPLQ 533
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515444|ref|XP_004164759.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/533 (78%), Positives = 466/533 (87%), Gaps = 5/533 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P VTMEVGNDGVA+IT+ NPPVNALA + LK KFEEA R+DVKA+VLTG GGR
Sbjct: 1 MAEPSVTMEVGNDGVALITMSNPPVNALARSMFPALKSKFEEAMRRNDVKAVVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDINVF+ +H GD SL+PDVSV++ VN +ED KKPIVAA+EGLALGGGLE+A+
Sbjct: 61 FSGGFDINVFEMIHKTGDTSLLPDVSVDIAVNTMEDAKKPIVAAIEGLALGGGLEMALAS 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARIA PK QLGLPEL+LGVIPGFGGTQRLPRL+GL KAIEMMLLSK+ITSEEG KLGLI
Sbjct: 121 HARIAVPKVQLGLPELSLGVIPGFGGTQRLPRLIGLPKAIEMMLLSKTITSEEGEKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DAVV+ EL+KV+R WALDIA RRKPWIR+LHRTD++GSL+EAR VLK AR QAKK APN
Sbjct: 181 DAVVSPNELMKVARKWALDIAERRKPWIRTLHRTDRIGSLAEARSVLKSAREQAKKIAPN 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
PQ AC+DVIE+GI+HGGYSGVLKE KVF+ELV DT++GLVHVFF VPNVTD
Sbjct: 241 TPQQLACIDVIEDGIIHGGYSGVLKEDKVFRELVATDTAKGLVHVFFPS-----VPNVTD 295
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
GLKPR V+KVA+IGGGLMGSGIATA IL+NI+VV+KE+N EYL KGIKTIEAN+RGLV
Sbjct: 296 RGLKPRNVKKVAIIGGGLMGSGIATAFILSNIHVVVKEINPEYLQKGIKTIEANLRGLVV 355
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+GKLTQDKAN AL +LKG LDYS+FKDVDMVIEA +E+VPLKQKIFSE+EK CP HCILA
Sbjct: 356 KGKLTQDKANKALLILKGSLDYSDFKDVDMVIEAAVENVPLKQKIFSEIEKICPAHCILA 415
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
TNTSTIDLN+VGEKT S DRIIGAHFFSPAHVMPLLEIVRTE+TS QVILDLMTVGKIIK
Sbjct: 416 TNTSTIDLNLVGEKTRSMDRIIGAHFFSPAHVMPLLEIVRTEKTSPQVILDLMTVGKIIK 475
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
KVPVVVGNCTGFAVNR FFPY Q+A+LLV LGVD+FRID I +FGLP+GPFQ
Sbjct: 476 KVPVVVGNCTGFAVNRTFFPYVQAAQLLVHLGVDLFRIDRVITNFGLPLGPFQ 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520511|ref|XP_003528905.1| PREDICTED: peroxisomal fatty acid beta-oxidation multifunctional protein AIM1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/533 (79%), Positives = 476/533 (89%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA P+V EVG DGVA+IT+ NPPVNALAIPI+ GLK++F+EA R+DVKAIVLTG GGR
Sbjct: 1 MALPKVDFEVGTDGVAVITMCNPPVNALAIPIIMGLKNRFDEAARRNDVKAIVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDI+V QKVH GD S +PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61 FSGGFDISVMQKVHQTGDSSHLPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HAR+AAP+ QLGLPELTLG+IPGFGGTQRLPRL+GLSKA+EMML SK ITSEEG K GLI
Sbjct: 121 HARVAAPRAQLGLPELTLGIIPGFGGTQRLPRLIGLSKAVEMMLTSKPITSEEGRKFGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V+SEELLK SRLWAL+I RRKPWIRSLHRTDK+GSLSEAR VLK AR Q KKTAP+
Sbjct: 181 DAIVSSEELLKASRLWALEIGERRKPWIRSLHRTDKIGSLSEARAVLKTARQQVKKTAPH 240
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQ QAC+DVIE GIVHGGYSGVLKEA+VFK+LV+ DTS+GL++VFFAQRA SKVP VTD
Sbjct: 241 LPQQQACVDVIEHGIVHGGYSGVLKEAEVFKQLVISDTSKGLINVFFAQRAISKVPGVTD 300
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR V+K AVIGGGLMGSGIATA IL NI V+LKE+NSE+LLKGIKTIEANV GLV
Sbjct: 301 IGLKPRNVKKAAVIGGGLMGSGIATALILGNIRVILKEINSEFLLKGIKTIEANVNGLVR 360
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
RGKLT+ KA+ AL +LKGVLDYSEFKDVD+VIEAVIE++ LKQ IF +LEK CPPHCILA
Sbjct: 361 RGKLTKQKADAALSLLKGVLDYSEFKDVDLVIEAVIENISLKQTIFGDLEKICPPHCILA 420
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
+NTSTIDL++VG+ TSSQDRI GAHFFSPAH+MPLLEI+RT++TSAQVI+DL+TVGKIIK
Sbjct: 421 SNTSTIDLDVVGKTTSSQDRIAGAHFFSPAHIMPLLEIIRTDKTSAQVIVDLITVGKIIK 480
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
K PVVVGNCTGFAVN+ FFPYSQ A LLV+LGVDVFRID I +FG PIGPFQ
Sbjct: 481 KAPVVVGNCTGFAVNKTFFPYSQGAHLLVNLGVDVFRIDRLICNFGFPIGPFQ 533
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357500631|ref|XP_003620604.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] gi|355495619|gb|AES76822.1| Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/533 (78%), Positives = 472/533 (88%), Gaps = 2/533 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
MA+ +V EVGNDGVA+IT+ NPPVNALAIPI+ GLK+KFEEA R+DVKAIVLTG GGR
Sbjct: 1 MASVKVDFEVGNDGVAVITMCNPPVNALAIPIIRGLKNKFEEAARRNDVKAIVLTGKGGR 60
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FSGGFDI+V QKVH GD++L+PDVSVELVVN IED KKP+VAAVEGLALGGGLELAMGC
Sbjct: 61 FSGGFDISVMQKVHQTGDITLVPDVSVELVVNSIEDSKKPVVAAVEGLALGGGLELAMGC 120
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HAR+AAPK QLGLPELTLG+IPGFGGTQRLPRLVG SKA+EMML SK IT+EEG KLGLI
Sbjct: 121 HARVAAPKAQLGLPELTLGIIPGFGGTQRLPRLVGTSKAVEMMLTSKPITAEEGQKLGLI 180
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V+ ELLK+SR WAL+IA +R+PWIRSLH TDKLGS +AREVL+ AR KKTAP+
Sbjct: 181 DAIVSPAELLKLSRQWALEIAEQRRPWIRSLHITDKLGS--DAREVLRTARQHVKKTAPH 238
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+PQ QAC+DVIE GI+HGGYSGVL+EA+VFK+LV+ +T++GL+HVFFAQR SK+P VTD
Sbjct: 239 LPQQQACIDVIEHGILHGGYSGVLREAEVFKKLVLSETAKGLIHVFFAQRTISKIPGVTD 298
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
IGLKPR VRK AVIGGGLMGSGIATA IL NI V+LKEVNSEYL KGIKTIEANVRGLVT
Sbjct: 299 IGLKPRNVRKAAVIGGGLMGSGIATALILGNIRVILKEVNSEYLQKGIKTIEANVRGLVT 358
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
R KLTQ KA AL +LKGVLDY+EFKDVDMVIEAVIE V LKQ IFS+LEK CPPHCILA
Sbjct: 359 RKKLTQQKAEGALSLLKGVLDYAEFKDVDMVIEAVIEKVSLKQDIFSDLEKICPPHCILA 418
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIK 480
+NTSTIDLNI+GEK SSQDR+IGAHFFSPAH+MPLLEIVRT +TSAQVILDL+TVGKIIK
Sbjct: 419 SNTSTIDLNIIGEKISSQDRVIGAHFFSPAHIMPLLEIVRTNKTSAQVILDLVTVGKIIK 478
Query: 481 KVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
K PVVVGNCTGFAVNR FFPY+Q A L +LGVDVFRID I +FGLP+GPFQ
Sbjct: 479 KSPVVVGNCTGFAVNRTFFPYAQGAHFLANLGVDVFRIDRLISNFGLPMGPFQ 531
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799088|ref|XP_002867428.1| hypothetical protein ARALYDRAFT_491857 [Arabidopsis lyrata subsp. lyrata] gi|297313264|gb|EFH43687.1| hypothetical protein ARALYDRAFT_491857 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/530 (76%), Positives = 476/530 (89%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
VTM+VGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A R+DVKAIVLTGN GRFSGGF
Sbjct: 7 VTMDVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLTGNNGRFSGGF 66
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
DINVFQ+VH GD+SLMP+VSVELV NL+ED +KP+VAAVEGLALGGGLELAM CHAR+A
Sbjct: 67 DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPLVAAVEGLALGGGLELAMACHARVA 126
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V
Sbjct: 127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGQKLGLIDALVP 186
Query: 186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
++L SR WALDIA RKP++RSLHRTDK+GSLSEAR +LK +R AKK APNMPQH
Sbjct: 187 PGDVLSTSRKWALDIADGRKPFLRSLHRTDKIGSLSEARAILKNSRQLAKKVAPNMPQHH 246
Query: 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
AC++VIEEGIVHGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct: 247 ACIEVIEEGIVHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306
Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
R ++KVAVIGGGLMGSGI TA +L+NI VVLKE+NSEYL+KG K++EAN++GLV+RGKLT
Sbjct: 307 RPIKKVAVIGGGLMGSGITTALLLSNIRVVLKEINSEYLMKGTKSVEANIKGLVSRGKLT 366
Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
QDKA AL + KGVLDY+EFKDVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct: 367 QDKAGKALSLFKGVLDYTEFKDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
IDL+++GEKT+S+DRI+GAHFFSPAH+M LLEIVR++ TSAQVILDLM VGK IKKVPVV
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMTLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486
Query: 486 VGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEG 535
VGNC GFAVNR FFPY+Q+A +L +LGVD+FRIDS I SFGLP+GPFQ G
Sbjct: 487 VGNCIGFAVNRTFFPYTQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLG 536
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 539 | ||||||
| TAIR|locus:2119891 | 721 | AIM1 "ABNORMAL INFLORESCENCE M | 0.983 | 0.735 | 0.715 | 1.8e-204 | |
| UNIPROTKB|Q8W1L6 | 726 | MFP "Peroxisomal fatty acid be | 0.985 | 0.731 | 0.698 | 8.1e-195 | |
| UNIPROTKB|Q39659 | 725 | Q39659 "Glyoxysomal fatty acid | 0.987 | 0.733 | 0.575 | 1e-164 | |
| UNIPROTKB|O49809 | 725 | O49809 "Glyoxysomal fatty acid | 0.977 | 0.726 | 0.583 | 8.4e-161 | |
| TAIR|locus:2077542 | 725 | MFP2 "multifunctional protein | 0.977 | 0.726 | 0.580 | 1.4e-160 | |
| ZFIN|ZDB-GENE-031222-5 | 761 | hadhaa "hydroxyacyl-Coenzyme A | 0.740 | 0.524 | 0.319 | 1.4e-74 | |
| ZFIN|ZDB-GENE-041111-204 | 763 | hadhab "hydroxyacyl-Coenzyme A | 0.740 | 0.522 | 0.308 | 2.2e-72 | |
| UNIPROTKB|F1PIP0 | 747 | HADHA "Uncharacterized protein | 0.740 | 0.534 | 0.305 | 6e-72 | |
| UNIPROTKB|Q29554 | 763 | HADHA "Trifunctional enzyme su | 0.740 | 0.522 | 0.308 | 8.5e-72 | |
| MGI|MGI:2135593 | 763 | Hadha "hydroxyacyl-Coenzyme A | 0.740 | 0.522 | 0.303 | 5.2e-71 |
| TAIR|locus:2119891 AIM1 "ABNORMAL INFLORESCENCE MERISTEM" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1978 (701.3 bits), Expect = 1.8e-204, P = 1.8e-204
Identities = 379/530 (71%), Positives = 448/530 (84%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
VTMEVGNDGVA+IT+ NPPVN+LA PI++GLK+KF +A R+DVKAIVL GN GRFSGGF
Sbjct: 7 VTMEVGNDGVAVITISNPPVNSLASPIISGLKEKFRDANQRNDVKAIVLIGNNGRFSGGF 66
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
DINVFQ+VH GD+SLMP+VSVELV NL+ED +KP+ M CHAR+A
Sbjct: 67 DINVFQQVHKTGDLSLMPEVSVELVCNLMEDSRKPVVAAVEGLALGGGLELAMACHARVA 126
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
APK QLGLPELTLGVIPGFGGTQRLPRLVGL+KA +M+LLSKSI+SEEG KLGLIDA+V
Sbjct: 127 APKAQLGLPELTLGVIPGFGGTQRLPRLVGLAKATDMILLSKSISSEEGHKLGLIDALVP 186
Query: 186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
++L SR WALDIA RKP+++SLHRTDK+GSLSEAR +LK +R AKK APNMPQH
Sbjct: 187 PGDVLSTSRKWALDIAEGRKPFLQSLHRTDKIGSLSEARAILKNSRQLAKKIAPNMPQHH 246
Query: 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
AC++VIEEGI+HGGYSGVLKEA+VFK+LV+ DT++GLVHVFFAQRATSKVPNVTD+GLKP
Sbjct: 247 ACIEVIEEGIIHGGYSGVLKEAEVFKQLVLSDTAKGLVHVFFAQRATSKVPNVTDVGLKP 306
Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
R ++KVAVIGGGLMGSGIATA +L+NI VVLKE+NSE+L+KGIK++EAN++ LV+RGKLT
Sbjct: 307 RPIKKVAVIGGGLMGSGIATALLLSNIRVVLKEINSEFLMKGIKSVEANMKSLVSRGKLT 366
Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
QDKA AL + KGVLDY+EF DVDMVIEAVIE++ LKQ IF E+EK C PHCILA+NTST
Sbjct: 367 QDKAGKALSLFKGVLDYTEFNDVDMVIEAVIENIQLKQNIFKEIEKVCSPHCILASNTST 426
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 485
IDL+++GEKT+S+DRI+GAHFFSPAH+MPLLEIVR++ TSAQVILDLM
Sbjct: 427 IDLDVIGEKTNSKDRIVGAHFFSPAHLMPLLEIVRSKNTSAQVILDLMAVGKAIKKVPVV 486
Query: 486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEG 535
NC GFAVNR FFPYSQ+A +L +LGVD+FRIDS I SFGLP+GPFQ G
Sbjct: 487 VGNCIGFAVNRTFFPYSQAAHMLANLGVDLFRIDSVITSFGLPLGPFQLG 536
|
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| UNIPROTKB|Q8W1L6 MFP "Peroxisomal fatty acid beta-oxidation multifunctional protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1887 (669.3 bits), Expect = 8.1e-195, P = 8.1e-195
Identities = 371/531 (69%), Positives = 430/531 (80%)
Query: 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
A RVTMEVG DGVA++T+ NPPVNAL I+ GLK+K+ EA RDDVKAIVLTG GG+F
Sbjct: 4 AIRVTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGKFC 63
Query: 63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHA 122
GGFDINVF +VH G+VSLMPDVSVELV NL+E KKP MGCHA
Sbjct: 64 GGFDINVFTEVHKTGNVSLMPDVSVELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHA 123
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
RI+ P+ QLGLPELTLG+IPGFGGTQRLPRLVGL KAIEMML SK IT++EG + GL+DA
Sbjct: 124 RISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLVDA 183
Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242
+ + +EL+K+SRLWAL+IA RKPWIRSL RTD+LGSLSEAR VL AR QAKK A N+P
Sbjct: 184 LCSPDELIKMSRLWALEIANYRKPWIRSLARTDRLGSLSEARSVLNSARQQAKKVAANLP 243
Query: 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIG 302
QHQACLDV+EEG++ GG++GVLKEAKVFKELV+ TS+ LVH FFAQR T+KVP VTD+
Sbjct: 244 QHQACLDVMEEGVLCGGHAGVLKEAKVFKELVLSPTSKALVHAFFAQRLTTKVPGVTDVQ 303
Query: 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG 362
LKPR +RKVAVIGGGLMGSGIATA +++N VVLKEVN ++L +G K I AN+ GLV RG
Sbjct: 304 LKPRKIRKVAVIGGGLMGSGIATALLVSNTSVVLKEVNPQFLQRGQKMIAANLEGLVKRG 363
Query: 363 KLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422
LT+DK N A+ +LKG LDYS+FKDVDMVIEAVIE +PLKQ IFS+LEK CPPHCILATN
Sbjct: 364 SLTKDKMNKAMSLLKGALDYSDFKDVDMVIEAVIEKIPLKQSIFSDLEKVCPPHCILATN 423
Query: 423 TSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXX 482
TSTIDLN+VGEKT+SQDRIIGAHFFSPAH+MPLLEIVRTE+TS Q ILDL+T
Sbjct: 424 TSTIDLNVVGEKTNSQDRIIGAHFFSPAHIMPLLEIVRTEKTSPQAILDLITVGKMIKKV 483
Query: 483 XXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
NCTGFAVNR FFPY+Q + LLVS+G+DVFRID I SFG+P+GPFQ
Sbjct: 484 PVVVGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQ 534
|
|
| UNIPROTKB|Q39659 Q39659 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Cucumis sativus (taxid:3659)] | Back alignment and assigned GO terms |
|---|
Score = 1603 (569.3 bits), Expect = 1.0e-164, P = 1.0e-164
Identities = 307/533 (57%), Positives = 394/533 (73%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
A R MEVG DGVAIIT+INPPVN+L+ ++ L+D +E+A RDDVKAIV+TG G+F
Sbjct: 5 AKGRTVMEVGTDGVAIITIINPPVNSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKF 64
Query: 62 SGGFDINVFQKVHGA-GDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGC 120
SGGFDI F + G G+ + ++S+E++ ++ E +KP M C
Sbjct: 65 SGGFDITAFGVLQGGKGEQPNVRNISIEMITDIFEAARKPAVAAIDGLALGGGLEVAMAC 124
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
HARI+ P QLGLPEL LG+IPGFGGTQRLPRLVGLSKA+EMML SK I +E LGL+
Sbjct: 125 HARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLV 184
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240
DA+V EEL+ +R WAL+I RR+PW+ SLHRTDKL SL+EAR++ LAR QAKK PN
Sbjct: 185 DAIVPPEELINTARRWALEILERRRPWVHSLHRTDKLESLAEARKIFNLARAQAKKQYPN 244
Query: 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTD 300
+ AC+D +E G+V G +G+ KEA+ F+ L+ DT + L+H+FFAQR+T+KVP VTD
Sbjct: 245 LKHTIACIDAVETGVVSGPRAGLWKEAEEFQGLLHSDTCKSLIHIFFAQRSTTKVPGVTD 304
Query: 301 IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT 360
+GL PR ++KVA++GGGLMGSGIATA IL+N +VVLKEVN ++L GI + AN++ V
Sbjct: 305 LGLVPRQIKKVAIVGGGLMGSGIATALILSNYHVVLKEVNDKFLQAGIDRVRANLQSRVK 364
Query: 361 RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420
+G +T +K ++ +LKGVL+Y FKDVDMVIEAVIE+V LKQ+IFS+LEK CPPHC+LA
Sbjct: 365 KGNMTNEKFEKSISLLKGVLNYESFKDVDMVIEAVIENVSLKQQIFSDLEKYCPPHCMLA 424
Query: 421 TNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXX 480
TNTSTIDL ++GE+ S+DRIIGAHFFSPAH+MPLLEIVRT+ T+AQVI+DL+
Sbjct: 425 TNTSTIDLELIGERIKSRDRIIGAHFFSPAHIMPLLEIVRTKHTAAQVIVDLLDVGKNIK 484
Query: 481 XXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
NCTGFAVNR FFPYSQ+A LL GVD ++ID AI FG+P+GPF+
Sbjct: 485 KTPVVVGNCTGFAVNRMFFPYSQAAILLAEHGVDPYQIDRAISKFGMPMGPFR 537
|
|
| UNIPROTKB|O49809 O49809 "Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a" [Brassica napus (taxid:3708)] | Back alignment and assigned GO terms |
|---|
Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
Identities = 308/528 (58%), Positives = 390/528 (73%)
Query: 7 TMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
T+EVG DGVA+ITLINPPVN+L+ ++ LK +EEA SR+DVKAIV+TG G+FSGGFD
Sbjct: 10 TIEVGADGVAVITLINPPVNSLSFDVLYSLKSNYEEALSRNDVKAIVVTGAKGKFSGGFD 69
Query: 67 INVFQKVH-GAGDVSLMPDVSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCHARIA 125
I+ F ++ G + +S++++ +L+E KKP M CHARI+
Sbjct: 70 ISGFGEIQKGTMKEPKVGYISIDILTDLLEAAKKPSVAAIDGLALGGGLELSMACHARIS 129
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
AP QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG LGLIDAVV
Sbjct: 130 APGAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVP 189
Query: 186 SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245
ELL +R WALDIA RRKPW+ S+ +TDKL L EARE+LK A+ Q ++ APNM
Sbjct: 190 PAELLNAARRWALDIAERRKPWVSSVLKTDKLPPLGEAREILKFAKDQTRRQAPNMKHPL 249
Query: 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKP 305
CL+ +E GIV G +G+ KEA+V E++ LDT++GL+HVFF+QR T+KVP VTD GL P
Sbjct: 250 MCLEAVEVGIVSGSRAGLEKEAQVGSEVINLDTTKGLIHVFFSQRGTTKVPGVTDRGLVP 309
Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
R + KVA+IGGGLMGSGIATA IL+N V+LKEVN ++L GI ++AN++ V +GK++
Sbjct: 310 RKINKVAIIGGGLMGSGIATALILSNYSVILKEVNEKFLEAGIGRVKANLQSRVKKGKMS 369
Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
++K + +LKG LDY F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+NTST
Sbjct: 370 KEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST 429
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXXXXXX 485
IDLN +GE+T SQDRIIGAHFFSPAHVMPLLEIVRT TSAQVI+DL+
Sbjct: 430 IDLNKIGERTKSQDRIIGAHFFSPAHVMPLLEIVRTNHTSAQVIVDLLDVGKKIRKTPVV 489
Query: 486 XXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
NCTGFAVNR FFPY+Q+A LV G D + ID A+ FG+P+GPF+
Sbjct: 490 VGNCTGFAVNRMFFPYTQAAMFLVEHGTDPYLIDKAVSKFGMPMGPFR 537
|
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| TAIR|locus:2077542 MFP2 "multifunctional protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1564 (555.6 bits), Expect = 1.4e-160, P = 1.4e-160
Identities = 309/532 (58%), Positives = 389/532 (73%)
Query: 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+ MEVG DGVA+ITLINPPVN+L+ ++ LK +EEA SR+DVKAIV+TG GRFSGG
Sbjct: 8 KTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGG 67
Query: 65 FDINVFQKVHGAGDVSLMPD---VSVELVVNLIEDCKKPIXXXXXXXXXXXXXXXXMGCH 121
FDI+ F ++ G+V P +S++++ +L+E +KP M CH
Sbjct: 68 FDISGFGEMQ-KGNVK-EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACH 125
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
ARI+AP QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG LGLID
Sbjct: 126 ARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGLID 185
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241
AVV EL+ +R WALDI RRKPW+ S+ +TDKL L EARE+L A+ Q K APNM
Sbjct: 186 AVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAPNM 245
Query: 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI 301
CLD IE GIV G +G+ KEA+V ++V LDT++GL+HVFF+QR T+KVP VTD
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305
Query: 302 GLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTR 361
GL PR ++KVA+IGGGLMGSGIATA IL+N V+LKEVN ++L GI ++AN++ V +
Sbjct: 306 GLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRK 365
Query: 362 GKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
G ++Q+K + +LKG LDY F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCILA+
Sbjct: 366 GSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILAS 425
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTXXXXXXX 481
NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT TSAQVI+DL+
Sbjct: 426 NTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKK 485
Query: 482 XXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
NCTGFAVNR FFPY+Q+A LV G D + ID AI FG+P+GPF+
Sbjct: 486 TPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFR 537
|
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| ZFIN|ZDB-GENE-031222-5 hadhaa "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 135/422 (31%), Positives = 212/422 (50%)
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
KT LG PE+ LG++PG GGTQRLP++VGL A +MML ++I +++ K+GL+ +V
Sbjct: 164 KTVLGTPEVMLGLLPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADKAKKMGLVHQLVDPL 223
Query: 185 ----------TSEELLKVSRLWALDIAARRKPWIRS---LHRT-DKLGSLSEARE-VLKL 229
T E L +V+ +A +AA++ + + + D + LS R+ + K
Sbjct: 224 GPGLKSPEERTIEYLEEVAVDFAKGLAAKKVTLEKKKGLMQKVQDFVMGLSLVRQQIYKT 283
Query: 230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
+ K + + P ++ I+ GI G +G L EA+ F +L M SR L+ ++
Sbjct: 284 VHGKVMKQSKGLYPAPLKIIECIQTGIEKGNAAGYLAEAQNFGQLAMSSESRALIGLYHG 343
Query: 289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
Q A K G R V+ +A++G GLMG+GIA I + +LK+ E L +G
Sbjct: 344 QVACKK----NHFGKPEREVKNLAILGAGLMGAGIAQVTIDKGVATILKDTTLEGLARGE 399
Query: 349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
+ + + + LT + + + L G LDY F+ DMVIEAV E + +K K+ E
Sbjct: 400 QQVYKGLNDKTKKKSLTTFERDGIMSKLSGQLDYHGFEKADMVIEAVFEDLAIKHKVLKE 459
Query: 409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
+E PPHCI ATNTS + + + + +++IG H+FSP M LLEI+ T++TS
Sbjct: 460 VEAVIPPHCIFATNTSALPIKDIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 519
Query: 469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
+ + GF R P A ++ GV ++DS FG P
Sbjct: 520 TASAVAIGLKQGKLIVVVGDGPGFYTTRCLAPMLAEAVRILQEGVGPKKLDSLTTGFGFP 579
Query: 529 IG 530
+G
Sbjct: 580 VG 581
|
|
| ZFIN|ZDB-GENE-041111-204 hadhab "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase, alpha subunit b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.2e-72, Sum P(2) = 2.2e-72
Identities = 130/422 (30%), Positives = 210/422 (49%)
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-- 185
KT LG PE+ LG++PG GGTQRLP+++GL A ++ML +SI +++ K+GL+ +V
Sbjct: 166 KTVLGCPEVMLGLLPGAGGTQRLPKMLGLPSAFDVMLTGRSIRADKAKKMGLVHQLVDTL 225
Query: 186 -----SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK---LARLQAKKT 237
S E + L + + A R + + T + G + + ++ + R Q T
Sbjct: 226 GPGLKSPEERTIEYLEEVAVEAARGLAQKKITLTKEKGWMQKIQDYVMSYPFVRQQIYNT 285
Query: 238 APN--MPQ----HQACLDVIEE---GIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
M Q + A L +IE G+ G +G L E++ F +L M + S+ L+ ++
Sbjct: 286 VEKKVMKQTKGLYPAPLKIIESVKAGVEQGPTTGYLVESQQFGKLAMTNESKALIGLYHG 345
Query: 289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
Q A K G + V+ +A++G GLMG+GIA + I+ +LK+ + L +G
Sbjct: 346 QVACKK----NRFGTPEKEVKTLAILGAGLMGAGIAQVTVDKGIHTILKDTTVDGLSRGE 401
Query: 349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
+ + + + LT + + L L G LDY+ F DM+IEAV E + +K K+ E
Sbjct: 402 QQVFKGLNDKTKKKSLTSFERDTFLSNLTGQLDYNGFNKADMIIEAVFEDLSIKHKVLKE 461
Query: 409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
+E PPHCI ATNTS + + + + D+++G H+FSP M LLEI+ T++TS
Sbjct: 462 VEAVIPPHCIFATNTSALPIKDIAAVSKRPDKVVGMHYFSPVDKMQLLEIITTDKTSKDT 521
Query: 469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
+ + GF R P A ++ G D ++DS FG P
Sbjct: 522 TASAVAVGLKQGKVIIVVGDGPGFYTTRCLAPMLAEAVRILQEGTDPKKLDSLTTGFGFP 581
Query: 529 IG 530
+G
Sbjct: 582 VG 583
|
|
| UNIPROTKB|F1PIP0 HADHA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 527 (190.6 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
Identities = 129/422 (30%), Positives = 212/422 (50%)
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
KT LG PE+ LG++PG GGTQRLP++VGL A +MML ++I ++ ++GL+D +V
Sbjct: 151 KTVLGAPEVLLGILPGAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVEPL 210
Query: 185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
T E L +V+ +A ++ ++ R +KL S + + ++V K
Sbjct: 211 GPGLKPPEERTIEYLEEVAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIPFVRQQVYKK 270
Query: 230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
+ +K + P +DV++ GI G +G L E++ F EL M S+ L+ ++
Sbjct: 271 VEEKVRKQTKGLYPAPLKIIDVVKTGIEQGNDAGYLSESQKFGELAMTKESKALMGLYHG 330
Query: 289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
Q K G + V+ +A++G GLMG+GIA + + +LK+ L +G
Sbjct: 331 QVLCKK----NKFGAPQKEVKDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTGLGRGQ 386
Query: 349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
+ + + V + LT + ++ L G LDY F+ DMVIEAV E + LK ++ E
Sbjct: 387 QQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKHRVLKE 446
Query: 409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
+E P HC+ A+NTS + +N + + +++IG H+FSP M LLEI+ T++TS
Sbjct: 447 VEAVIPGHCVFASNTSALPINEIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 506
Query: 469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
+ + GF R P ++ GV+ ++DS SFG P
Sbjct: 507 TASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVEPKKLDSLTTSFGFP 566
Query: 529 IG 530
+G
Sbjct: 567 VG 568
|
|
| UNIPROTKB|Q29554 HADHA "Trifunctional enzyme subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 8.5e-72, Sum P(2) = 8.5e-72
Identities = 130/422 (30%), Positives = 213/422 (50%)
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
KT LG PE+ LG++PG GGTQRLP++VG+ A +MML + I +++ K+GL+D +V
Sbjct: 166 KTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVEPL 225
Query: 185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
T E L +V+ +A +A ++ R +KL S + + +++ K
Sbjct: 226 GPGLKPPEERTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKK 285
Query: 230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
+ +K + P +DV++ GI G +G L E++ F EL M S+ L+ ++
Sbjct: 286 VEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRG 345
Query: 289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
Q K G + V+ +A++G GLMG+GIA + ++ +LK+ + L +G
Sbjct: 346 QTLCKK----NKFGAPQKEVKHLAILGAGLMGAGIAQVSVDKHLKTILKDASLPALGRGQ 401
Query: 349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
+ + + V + LT + ++ L G LDY F+ DMVIEAV E + LK K+ E
Sbjct: 402 QQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKE 461
Query: 409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
+E P HC+ A+NTS + ++ + + +++IG H+FSP M LLEI+ TE+TS
Sbjct: 462 VEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDS 521
Query: 469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
+ + GF R P ++ GV ++DS SFG P
Sbjct: 522 TASAVEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTTSFGFP 581
Query: 529 IG 530
+G
Sbjct: 582 VG 583
|
|
| MGI|MGI:2135593 Hadha "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 5.2e-71, Sum P(2) = 5.2e-71
Identities = 128/422 (30%), Positives = 212/422 (50%)
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV--- 184
KT LG+PE+ LG++PG GGTQRLP++VG+ A +MML ++I ++ K+GL+D +V
Sbjct: 166 KTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVEPL 225
Query: 185 ----------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA-----REVLKL 229
T E L +V+ +A +A R+ +S +KL + + ++V K
Sbjct: 226 GPGIKSPEERTIEYLEEVAVNFAKGLADRKVSAKQSKGLVEKLTTYAMTVPFVRQQVYKT 285
Query: 230 ARLQAKKTAPNM-PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288
+ KK + P +D ++ G+ G +G L E++ F EL + S+ L+ ++
Sbjct: 286 VEEKVKKQTKGLYPAPLKIIDAVKAGLEQGSDAGYLAESQKFGELALTKESKALMGLYNG 345
Query: 289 QRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348
Q K G + V+++A++G GLMG+GIA + + +LK+ L +G
Sbjct: 346 QVLCKK----NKFGAPQKNVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQ 401
Query: 349 KTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSE 408
+ + + V + LT + ++ L G LDY F+ DMVIEAV E + +K K+ E
Sbjct: 402 QQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLGVKHKVLKE 461
Query: 409 LEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468
+E P HCI A+NTS + +N + + +++IG H+FSP M LLEI+ T++TS
Sbjct: 462 VESVTPEHCIFASNTSALPINQIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTDKTSKDT 521
Query: 469 ILDLMTXXXXXXXXXXXXXNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLP 528
+ + GF R P ++ GVD ++D+ FG P
Sbjct: 522 TASAVAVGLRQGKVIIVVKDGPGFYTTRCLAPMMSEVMRILQEGVDPKKLDALTTGFGFP 581
Query: 529 IG 530
+G
Sbjct: 582 VG 583
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9ZPI6 | AIM1_ARATH | 1, ., 1, ., 1, ., 3, 5 | 0.7679 | 0.9833 | 0.7350 | yes | no |
| Q8W1L6 | MFP_ORYSJ | 1, ., 1, ., 1, ., 3, 5 | 0.7457 | 0.9851 | 0.7314 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 539 | |||
| PRK11154 | 708 | PRK11154, fadJ, multifunctional fatty acid oxidati | 1e-126 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 1e-102 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 5e-99 | |
| PRK11730 | 715 | PRK11730, fadB, multifunctional fatty acid oxidati | 3e-96 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 9e-91 | |
| COG1250 | 307 | COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Li | 3e-72 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 7e-65 | |
| pfam02737 | 180 | pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenas | 3e-64 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 1e-59 | |
| PRK05808 | 282 | PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydroge | 2e-52 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 6e-52 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 1e-51 | |
| PLN02545 | 295 | PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydroge | 2e-48 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 6e-46 | |
| TIGR02279 | 503 | TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehy | 1e-41 | |
| PRK06035 | 291 | PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenas | 2e-41 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 9e-40 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 3e-39 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 4e-39 | |
| PRK07819 | 286 | PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydroge | 2e-38 | |
| PRK08268 | 507 | PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogena | 2e-38 | |
| PRK09260 | 288 | PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydroge | 3e-38 | |
| PRK07530 | 292 | PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydroge | 4e-37 | |
| PRK05862 | 257 | PRK05862, PRK05862, enoyl-CoA hydratase; Provision | 1e-34 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 3e-34 | |
| PRK05980 | 260 | PRK05980, PRK05980, enoyl-CoA hydratase; Provision | 2e-33 | |
| PRK06130 | 311 | PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydroge | 2e-33 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 4e-33 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 7e-32 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 2e-30 | |
| PRK09076 | 258 | PRK09076, PRK09076, enoyl-CoA hydratase; Provision | 1e-29 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 7e-27 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 2e-26 | |
| PRK08150 | 255 | PRK08150, PRK08150, enoyl-CoA hydratase; Provision | 2e-26 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 4e-26 | |
| PRK08252 | 254 | PRK08252, PRK08252, enoyl-CoA hydratase; Provision | 6e-26 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 7e-26 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 1e-25 | |
| PRK08293 | 287 | PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydroge | 1e-25 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 2e-25 | |
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 5e-25 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 3e-24 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 4e-24 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 4e-24 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 1e-23 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 1e-23 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 3e-23 | |
| PRK06143 | 256 | PRK06143, PRK06143, enoyl-CoA hydratase; Provision | 3e-22 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 4e-22 | |
| PRK08259 | 254 | PRK08259, PRK08259, enoyl-CoA hydratase; Provision | 4e-22 | |
| PRK05869 | 222 | PRK05869, PRK05869, enoyl-CoA hydratase; Validated | 5e-22 | |
| PRK07799 | 263 | PRK07799, PRK07799, enoyl-CoA hydratase; Provision | 3e-21 | |
| COG0447 | 282 | COG0447, MenB, Dihydroxynaphthoic acid synthase [C | 4e-21 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 5e-21 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 6e-20 | |
| PRK07938 | 249 | PRK07938, PRK07938, enoyl-CoA hydratase; Provision | 7e-20 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 8e-20 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 9e-20 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 1e-19 | |
| PRK07110 | 249 | PRK07110, PRK07110, polyketide biosynthesis enoyl- | 2e-19 | |
| PRK07396 | 273 | PRK07396, PRK07396, dihydroxynaphthoic acid synthe | 1e-17 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 2e-17 | |
| PRK08269 | 314 | PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydroge | 2e-17 | |
| PLN02921 | 327 | PLN02921, PLN02921, naphthoate synthase | 3e-17 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 1e-16 | |
| PRK06023 | 251 | PRK06023, PRK06023, enoyl-CoA hydratase; Provision | 3e-16 | |
| PRK08290 | 288 | PRK08290, PRK08290, enoyl-CoA hydratase; Provision | 3e-16 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 5e-16 | |
| PRK06213 | 229 | PRK06213, PRK06213, enoyl-CoA hydratase; Provision | 1e-15 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 2e-15 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 2e-15 | |
| PRK07531 | 495 | PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA | 2e-15 | |
| TIGR03189 | 251 | TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar | 5e-15 | |
| PRK06563 | 255 | PRK06563, PRK06563, enoyl-CoA hydratase; Provision | 6e-15 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 7e-15 | |
| PRK07854 | 243 | PRK07854, PRK07854, enoyl-CoA hydratase; Provision | 8e-15 | |
| PRK08788 | 287 | PRK08788, PRK08788, enoyl-CoA hydratase; Validated | 3e-14 | |
| PRK06129 | 308 | PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenas | 3e-14 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 4e-14 | |
| PRK11423 | 261 | PRK11423, PRK11423, methylmalonyl-CoA decarboxylas | 6e-14 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 2e-13 | |
| PRK09120 | 275 | PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata | 4e-13 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 1e-12 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 1e-12 | |
| PRK05617 | 342 | PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol | 1e-12 | |
| PRK07112 | 255 | PRK07112, PRK07112, polyketide biosynthesis enoyl- | 4e-12 | |
| PLN03214 | 278 | PLN03214, PLN03214, probable enoyl-CoA hydratase/i | 3e-10 | |
| PLN02874 | 379 | PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol | 8e-10 | |
| PRK08321 | 302 | PRK08321, PRK08321, naphthoate synthase; Validated | 9e-10 | |
| TIGR03200 | 360 | TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-car | 6e-09 | |
| PRK07066 | 321 | PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydroge | 6e-09 | |
| PLN02988 | 381 | PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol | 8e-09 | |
| PLN02851 | 407 | PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol | 2e-08 | |
| pfam00725 | 97 | pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, | 7e-07 | |
| PLN02267 | 239 | PLN02267, PLN02267, enoyl-CoA hydratase/isomerase | 5e-06 | |
| PRK12478 | 298 | PRK12478, PRK12478, enoyl-CoA hydratase; Provision | 3e-05 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 3e-05 | |
| PLN02157 | 401 | PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol | 2e-04 | |
| TIGR03222 | 546 | TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lya | 7e-04 | |
| PRK08184 | 550 | PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; | 0.001 |
| >gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 386 bits (993), Expect = e-126
Identities = 196/545 (35%), Positives = 288/545 (52%), Gaps = 22/545 (4%)
Query: 1 MAAPRV-TMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-G 56
M T+ V D +A+IT+ P +N L ++ ++ ++K +V G
Sbjct: 1 MEMASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISG 60
Query: 57 NGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
F G DIN+ A + + + + IE P+VAA+ G LGGGLEL
Sbjct: 61 KPDNFIAGADINMLAACKTAQEAEALARQGQQ-LFAEIEALPIPVVAAIHGACLGGGLEL 119
Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
A+ CH R+ PKT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L K + +++
Sbjct: 120 ALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQA 179
Query: 175 WKLGLIDAVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL-KLAR 231
KLGL+D VV LL+V+ A A R P L + LG R +L K AR
Sbjct: 180 LKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLG-----RALLFKQAR 234
Query: 232 LQA-KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290
+ KT N P + LDV+ G+ G SG EA+ F EL M S L +FFA
Sbjct: 235 KKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATT 294
Query: 291 ATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIK 349
K KPR V KV V+GGGLMG GIA + V +K++N + + +K
Sbjct: 295 EMKKDTGS---DAKPRPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALK 351
Query: 350 TIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSEL 409
+ V R L + + + ++ G DY FK D+VIEAV E + LKQ++ +E+
Sbjct: 352 YSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFEDLALKQQMVAEV 411
Query: 410 EKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469
E+ C PH I A+NTS++ + + + +++IG H+FSP MPL+E++ +TSA+ I
Sbjct: 412 EQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETI 471
Query: 470 LDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLP 528
+ + K K P+VV + GF VNR PY +++ARLL+ G + ID+A+ FG P
Sbjct: 472 ATTVALAKKQGKTPIVVRDGAGFYVNRILAPYINEAARLLLE-GEPIEHIDAALVKFGFP 530
Query: 529 IGPFQ 533
+GP
Sbjct: 531 VGPIT 535
|
Length = 708 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 322 bits (827), Expect = e-102
Identities = 190/538 (35%), Positives = 284/538 (52%), Gaps = 21/538 (3%)
Query: 7 TMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSG 63
T+ V DG+AI+T+ +N L + + + ++ +VL +G F
Sbjct: 3 TLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIA 62
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G DI++ AG+ + L +E P+VAA+ G LGGGLELA+ CH+R
Sbjct: 63 GADISMLAACQTAGEAKALAQQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSR 121
Query: 124 IAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
+ + KT LGLPE+ LG++PG GGTQRLPRL+G+S A++M+L K + +++ KLGL+D
Sbjct: 122 VCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVD 181
Query: 182 AVVTSEELLKVSRLWALD--IAARRKPWIRSLHRTDKLGSLSEAREVL--KLARLQAKKT 237
VV LL + AL + L LG R +L + A+ AKKT
Sbjct: 182 DVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLG-----RALLFDQAAKKTAKKT 236
Query: 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
N P + LDV+ +G+ G G+ EA+ F ELVM S L +FFA K
Sbjct: 237 QGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETG 296
Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVR 356
P ++KV ++GGGLMG GIA+ I V +K++N + + +K +
Sbjct: 297 SDAT---PAKIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLD 353
Query: 357 GLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPH 416
V R +T + +N + ++ G DY FKDVD+VIEAV E + LK ++ ++E+ C H
Sbjct: 354 KGVKRRHMTPAERDNQMALITGTTDYRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAH 413
Query: 417 CILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVG 476
I A+NTS++ + + S + +IG H+FSP MPL+E++ TS Q I + +
Sbjct: 414 TIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALA 473
Query: 477 KIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
K K P+VV + GF VNR PY +++ARLL+ G V ID A+ FG P+GP
Sbjct: 474 KKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLE-GEPVEHIDKALVKFGFPVGPIT 530
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 315 bits (808), Expect = 5e-99
Identities = 194/553 (35%), Positives = 277/553 (50%), Gaps = 28/553 (5%)
Query: 1 MAAPRVTMEVGND-GVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNG 58
MA EV D V I N VN L+ + A K+ E + + +K+ VL +G
Sbjct: 10 MARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKP 69
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
G F G DI + A +V+ + E+ IE +KPIVAA+ G LGGGLELA+
Sbjct: 70 GSFVAGADIQMIAACKTAQEVTQLSQEGQEMFER-IEKSQKPIVAAISGSCLGGGLELAL 128
Query: 119 GCHARIAAP--KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
CH RIA KT LGLPE+ LG++PG GGTQRLP+L G+ A++MML K I ++ K
Sbjct: 129 ACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKK 188
Query: 177 LGLIDAVV-------------TSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEA 223
+G++D +V T E L +V+ +A +A + R K+
Sbjct: 189 MGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVMT 248
Query: 224 -----REVLKLARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLD 277
++V K A + K T P LDV+ G G +G E+K F EL M
Sbjct: 249 NPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTF 308
Query: 278 TSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLK 337
S+ L+ +F Q K G R V+ +AV+G GLMG+GIA + + VLK
Sbjct: 309 ESKALIGLFHGQTDCKK----NKFGKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364
Query: 338 EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397
+ L +G + + + V R K+T + ++ L L LDYS FK+ DMVIEAV E
Sbjct: 365 DATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGFKNADMVIEAVFE 424
Query: 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE 457
+ LK K+ E+E PPHCI+A+NTS + + + +S +++IG H+FSP M LLE
Sbjct: 425 DLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLE 484
Query: 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR 517
I+ + TS + + VG KV +VV + GF R P L+ GVD +
Sbjct: 485 IITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKK 544
Query: 518 IDSAIRSFGLPIG 530
+D FG P+G
Sbjct: 545 LDKLTTKFGFPVG 557
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = 3e-96
Identities = 179/535 (33%), Positives = 275/535 (51%), Gaps = 28/535 (5%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DG+A + P VN L +A L + + ++ D+K ++LT F G DI F
Sbjct: 15 DGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFL 74
Query: 72 KVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+ A + L + + N +ED P VAA+ G ALGGG E + R+A+P +
Sbjct: 75 SLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDAR 134
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+GLPE LG++PGFGGT RLPRL+G A+E + K + +E+ K+G +DAVV E+L
Sbjct: 135 IGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQ 194
Query: 191 K--VSRLWA-----LDIAARRKPWIRSLHRTDKLGSLS----EAREVLKLAR-LQAKKTA 238
+ ++ L LD ARR+P KL L EA A+ + A+K
Sbjct: 195 EAALALLKQAIAGKLDWKARRQP---------KLEPLKLSKIEAMMSFTTAKGMVAQKAG 245
Query: 239 PNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297
+ P + IE G L+ EAK F +L + +R LV +F +
Sbjct: 246 KHYPAPMTAVKTIEAAAGL-GRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAK 304
Query: 298 VTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRG 357
KP V++ AV+G G+MG GIA + V++K++N + L G+ +
Sbjct: 305 KLAKDAKP--VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNK 362
Query: 358 LVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
V RGK+ K L ++ LDY+ F+ VD+V+EAV+E+ +K + +E+E+
Sbjct: 363 QVERGKIDGAKMAGVLSSIRPTLDYAGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDT 422
Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
ILA+NTSTI ++++ + + G HFF+P H MPL+E++R E+TS + I ++
Sbjct: 423 ILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYAS 482
Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGP 531
+ K P+VV +C GF VNR FPY L+ G D +ID + + FG P+GP
Sbjct: 483 KMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGP 537
|
Length = 715 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 292 bits (750), Expect = 9e-91
Identities = 172/540 (31%), Positives = 271/540 (50%), Gaps = 18/540 (3%)
Query: 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
+ + DG+A + P VN +A L + ++ +K ++LT F
Sbjct: 5 GKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAF 64
Query: 62 SGGFDINVFQKVHGAGDVSLMPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
G DI F + D L+ + + N +ED P VAA+ G+ALGGG E +
Sbjct: 65 IVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLAT 124
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
RIA ++GLPE LG++PGFGGT RLPR++G A+E + K +E+ K+G +
Sbjct: 125 DFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAV 184
Query: 181 DAVVTSEEL-------LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR-L 232
DAVVT+++L LK + LD A+R+P + L KL + EA A+ +
Sbjct: 185 DAVVTADKLGAAALQLLKDAINGKLDWKAKRQPKLEPL----KLSKI-EAMMSFTTAKGM 239
Query: 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292
A+ P+ P + IE+ G + EAK F +L ++ L+ +F +
Sbjct: 240 VAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYV 299
Query: 293 SKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352
D K V++ AV+G G+MG GIA +V+K++N L G+
Sbjct: 300 KGKAKKADKIAK--DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA 357
Query: 353 ANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKA 412
+ V RG++T K L + L Y+ F +VD+V+EAV+E+ +K + +E+E+
Sbjct: 358 KLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDIVVEAVVENPKVKAAVLAEVEQH 417
Query: 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDL 472
ILA+NTSTI ++++ + + G HFF+P H MPL+E++R E++S + I +
Sbjct: 418 VREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATV 477
Query: 473 MTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGP 531
+ + K P+VV +C GF VNR FPY L+ G D RID + + FG P+GP
Sbjct: 478 VAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGP 537
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|224170 COG1250, FadB, 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 3e-72
Identities = 96/228 (42%), Positives = 142/228 (62%), Gaps = 2/228 (0%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
++KVAVIG G+MG+GIA L VVLK+++ E L + + IE N+ LV +GKLT++
Sbjct: 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEE 62
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+A+ AL + D + KD D+VIEAV+E + LK+++F+ELE P ILA+NTS++
Sbjct: 63 EADAALARITPTTDLAALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS 122
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + E +R IG HFF+P +MPL+E++R E+TS + + ++ K I K PVVV
Sbjct: 123 ITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVVK 182
Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQ 533
+ GF VNR A L+ GV ID+A+R GLP+GPF+
Sbjct: 183 DVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFE 230
|
Length = 307 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 7e-65
Identities = 90/211 (42%), Positives = 124/211 (58%), Gaps = 4/211 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
M V +E D VA+ITL +PP NAL+ ++ L + ++ D+V+ +V+ G G
Sbjct: 1 MKFLSVRVE---DHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRF 57
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
FS G DI F V A + + + ++ +E KP++AA+ G ALGGGLELAM C
Sbjct: 58 FSAGADIKEFTSVTEAEQATELAQLG-QVTFERVEKFSKPVIAAIHGAALGGGLELAMSC 116
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
H R A +LGLPEL LG+IPGF GTQRLPR VG +KA+EMML S+ IT E K GL+
Sbjct: 117 HIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLV 176
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
+ V E LL ++ A IA + R++
Sbjct: 177 NGVFPEETLLDDAKKLAKKIAGKSPATTRAV 207
|
Length = 257 |
| >gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 3e-64
Identities = 72/180 (40%), Positives = 113/180 (62%)
Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
KVAVIG G MG+GIA + VVL +++ E L K IE ++ LV +G++T++ A
Sbjct: 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEKARARIEKSLARLVEKGRITEEDA 60
Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
+ L + D ++ D D+VIEAV E++ LK+++F+EL+ PP ILA+NTS++ +
Sbjct: 61 DAVLARISFTTDLADAVDADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120
Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
+ T +R IG HFF+P +MPL+E+VR E+TS + + ++ + K I K PVVV +
Sbjct: 121 ELAAATKRPERFIGLHFFNPPPLMPLVEVVRGEKTSPETVATVVALAKKIGKTPVVVKDV 180
|
This family also includes lambda crystallin. Length = 180 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 1e-59
Identities = 81/190 (42%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Query: 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ GVA ITL P NAL++ ++ L +EA + DV+ +VLTG G F G D+
Sbjct: 6 DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKEL 65
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+ AG+ + ++ ++ + KP++AAV G ALGGGLELA+ C RIAA +
Sbjct: 66 AALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAK 125
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
GLPE+ LG++PG GGTQRLPRLVG ++A E++L + I++EE +LGL+D VV EELL
Sbjct: 126 FGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELL 185
Query: 191 KVSRLWALDI 200
+ A +
Sbjct: 186 AAALELARRL 195
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|180269 PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 2e-52
Identities = 86/228 (37%), Positives = 129/228 (56%), Gaps = 4/228 (1%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
G++K+ VIG G MG+GIA + VV+ +++ + +G+ TI ++ LV +GK+T+
Sbjct: 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTE 61
Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
AL + G D + KD D+VIEA E++ LK+KIF++L++ P ILATNTS++
Sbjct: 62 ADKEAALARITGTTDLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL 121
Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
+ + T D++IG HFF+P VM L+EI+R TS + + K I K PV V
Sbjct: 122 SITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV 181
Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGP 531
N GF VNR P A +++ GV ID ++ G PIGP
Sbjct: 182 KNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMK-LGCNHPIGP 228
|
Length = 282 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 6e-52
Identities = 84/192 (43%), Positives = 114/192 (59%), Gaps = 3/192 (1%)
Query: 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
GVA+I L P VNAL+ ++ L E+ VKAIVLTG G FS G DI
Sbjct: 5 EAGVAVIKLDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEM 64
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
A + + + +ED KP++AAV G ALGGGLELA+ C RIAA +
Sbjct: 65 AAEPLAQQAQFSL--EAQDLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIAADNAK 122
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
GLPE+ LG+IPG GGTQRLPR++G+S A+EM+L + I ++E K+GL+D VV E+L+
Sbjct: 123 FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQLV 182
Query: 191 KVSRLWALDIAA 202
+ + A +A
Sbjct: 183 EEAIELAQRLAD 194
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 1e-51
Identities = 89/230 (38%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DG+A+ITL P NAL + ++ L + +EA + DV+ +VLTG G FS G D+
Sbjct: 13 DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELL 72
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ + ++ + D KP++AAV G ALGGGLELA+ C RIAA +
Sbjct: 73 SPEDGNAAENLMQPGQD-LLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKF 131
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELL 190
GLPE+ LG++PG GGTQRLPRL+G +A E++L + I++ E +LGL+D VV +EELL
Sbjct: 132 GLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELL 191
Query: 191 KVSRLWALDIAARRK--PWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238
+ + A +AA + L R L+EA E LA + +
Sbjct: 192 ERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSE 241
|
Length = 257 |
| >gnl|CDD|215300 PLN02545, PLN02545, 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 2e-48
Identities = 77/228 (33%), Positives = 125/228 (54%), Gaps = 2/228 (0%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
++KV V+G G MGSGIA + V L + + L +G+ +I +++ LV +GK++Q+
Sbjct: 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQE 63
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+A+ L ++ + E +D D +IEA++ES LK+K+FSEL++ C P ILA+NTS+I
Sbjct: 64 EADATLGRIRCTTNLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS 123
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + T ++IG HF +P +M L+EI+R TS +V + + K V
Sbjct: 124 ITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCSQ 183
Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQ 533
+ GF VNR P A + GV ID+ ++ P+GP
Sbjct: 184 DYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLH 231
|
Length = 295 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 6e-46
Identities = 72/191 (37%), Positives = 101/191 (52%), Gaps = 4/191 (2%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGV IT+ P NAL + L D E A + V+ +VLTG G FS G DI F
Sbjct: 13 DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFP 72
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
K L P V + I KP+VAAV G A+G G+ LA+ C A+ +
Sbjct: 73 KAPPKPPDELAP---VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKF 129
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
LP LG+ P GG+ LPRL+G ++A EM+LL + +++EE ++GL++ VV + EL
Sbjct: 130 SLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDA 189
Query: 192 VSRLWALDIAA 202
+ A +AA
Sbjct: 190 EADAQAAKLAA 200
|
Length = 259 |
| >gnl|CDD|188207 TIGR02279, PaaC-3OHAcCoADH, 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 1e-41
Identities = 85/228 (37%), Positives = 129/228 (56%), Gaps = 2/228 (0%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
V VAVIG G MG+GIA V+L ++ +E L + I IEA + LVT+GKLT +
Sbjct: 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAE 64
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+ LK L V D D +VIEA++E++ +K+ +F++LE+ CP I+A+NTS++
Sbjct: 65 ECERTLKRLIPVTDLHALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS 124
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + + +R+ G HFF+PA VM L+E+V T+A+V L K PV
Sbjct: 125 ITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHCH 184
Query: 488 NCTGFAVNRAFFP-YSQSARLLVSLGVDVFRIDSAIR-SFGLPIGPFQ 533
+ GF VNR P Y+++ R L +D+A+R G P+GPF+
Sbjct: 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFE 232
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. Length = 503 |
| >gnl|CDD|180361 PRK06035, PRK06035, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 2e-41
Identities = 76/231 (32%), Positives = 126/231 (54%), Gaps = 5/231 (2%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN---VRGLVTRGKL 364
++ + V+G G+MG GIA V + +V+ E L ++ IE+ +R LV +GK+
Sbjct: 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKM 62
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
++D+A + ++ Y D D ++EAV E + LK+K+F+ELE+ P I+A+NTS
Sbjct: 63 SEDEAKAIMARIRTSTSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTS 122
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
I + + +DR IG H+F+PA VM L+E+VR TS + + + K I K+P+
Sbjct: 123 GIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPI 182
Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQ 533
V + GF R + A +G+ + ID + +FG P+GPF+
Sbjct: 183 EVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFE 233
|
Length = 291 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 9e-40
Identities = 73/206 (35%), Positives = 119/206 (57%), Gaps = 20/206 (9%)
Query: 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
++++ V ITL P NAL++ ++ L++ + +V+ ++LTG G + F
Sbjct: 5 ISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCA 64
Query: 64 GFDI------NVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
G D+ N Q H VSL + + ++E +P++AA+ G+ALGGGLELA
Sbjct: 65 GADLKERAGMNEEQVRHA---VSL-----IRTTMEMVEQLPQPVIAAINGIALGGGLELA 116
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
+ C RIAA LGL E TL +IPG GGTQRLPRL+G+ +A E++ + I+++E ++
Sbjct: 117 LACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEI 176
Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
GL++ VV + L + A++IA +
Sbjct: 177 GLVEFVVPAHLLEEK----AIEIAEK 198
|
Length = 260 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 3e-39
Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 9/204 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
A V +E DGVA++ L P NAL + + L + F E + D++AIVLTG
Sbjct: 4 TATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEK 63
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G DI F GA ++ L E I C KP++AAV G ALGGG ELAM
Sbjct: 64 VFAAGADIKEFATA-GAIEMYLR---HTERYWEAIAQCPKPVIAAVNGYALGGGCELAMH 119
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+A G PE+ +G++PG GGTQRL R VG KA+ M L + + E +GL
Sbjct: 120 ADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGL 179
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ VV E+ L AL++A
Sbjct: 180 VSEVVEDEQTLPR----ALELARE 199
|
Length = 261 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 4e-39
Identities = 81/214 (37%), Positives = 120/214 (56%), Gaps = 30/214 (14%)
Query: 8 MEVGN------DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
ME+ N +A++T IN P +NAL + L ++ + D+V A++LTG G
Sbjct: 1 MELKNVILEKEGHIAVVT-INRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGE 59
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVE----------LVVNLIEDCKKPIVAAVEGLA 109
+ F V GA D+S M D++ E V +E+ KP++AA+ G A
Sbjct: 60 K---AF-------VAGA-DISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFA 108
Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
LGGG EL+M C RIA+ K + G PE+ LG+ PGFGGTQRL R+VG KA E++ I
Sbjct: 109 LGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMI 168
Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
+EE ++GL++ VV E+L++ ++ A IAA
Sbjct: 169 NAEEALRIGLVNKVVEPEKLMEEAKALANKIAAN 202
|
Length = 260 |
| >gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 2e-38
Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 6/230 (2%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
+++V V+G G MG+GIA + V++ E E G IE ++ V+RGKLT+
Sbjct: 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTE 63
Query: 367 DKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP-PHCILATNTST 425
+ + AL L+ D +F D +VIEAV+E +K +IF+EL+K P +LA+NTS+
Sbjct: 64 RERDAALARLRFTTDLGDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSS 123
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT-VGKIIKKVPV 484
I + + T R++G HFF+P V+PL+E+V T TS + ++ K V
Sbjct: 124 IPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVV 183
Query: 485 VVGNCTGFAVNRAFFPYSQSA-RLLVSLGVDVFRIDSAIRSFGL--PIGP 531
+ +GF VN PY SA R++ S ID A+ G P+GP
Sbjct: 184 RAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMV-LGCAHPMGP 232
|
Length = 286 |
| >gnl|CDD|236211 PRK08268, PRK08268, 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 2e-38
Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 2/228 (0%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
+ VAVIG G MG+GIA V+L + + I A + LV +GKLT +
Sbjct: 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAE 66
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+A+ AL L+ V ++ D D+V+EA++E + +KQ +F++LE P CILATNTS++
Sbjct: 67 QADAALARLRPVEALADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS 126
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + +R+ G HFF+P +M L+E+V T V L + + K PV
Sbjct: 127 ITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRAK 186
Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQ 533
+ GF VNRA PY A ++ GV D ID+ +R + G +GPF+
Sbjct: 187 DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFE 234
|
Length = 507 |
| >gnl|CDD|236434 PRK09260, PRK09260, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 3e-38
Identities = 77/231 (33%), Positives = 111/231 (48%), Gaps = 3/231 (1%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
+ K+ V+G G+MG GIA ++ L ++ E L + I + V RGKLT+
Sbjct: 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEA 60
Query: 368 KANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426
AL L LD D D+VIEAV E + LK+ +F + P C +ATNTST+
Sbjct: 61 ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM 120
Query: 427 DLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
+ T +R+I HFF+P H M L+E++R TS + + V + + K VVV
Sbjct: 121 SPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV 180
Query: 487 GNCTGFAVNRAFFPYSQSARLLVSLGVDVFR-IDSAIR-SFGLPIGPFQEG 535
GF +R A ++ GV ID AIR P+GP + G
Sbjct: 181 NEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELG 231
|
Length = 288 |
| >gnl|CDD|181018 PRK07530, PRK07530, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-37
Identities = 80/232 (34%), Positives = 118/232 (50%), Gaps = 10/232 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
++KV VIG G MG+GIA L V+L +V+++ L G+ TI N+ V +GK++++
Sbjct: 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEE 63
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP---PHCILATNTS 424
AL + D + D D+VIEA E +K+KIF++L CP P ILATNTS
Sbjct: 64 ARAAALARISTATDLEDLADCDLVIEAATEDETVKRKIFAQL---CPVLKPEAILATNTS 120
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
+I + + T +R IG HF +P VM L+E++R T + K
Sbjct: 121 SISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTIT 180
Query: 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFGL--PIGPFQ 533
V + F VNR P A + GV V ID+A++ G P+GP +
Sbjct: 181 VAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMK-LGANHPMGPLE 231
|
Length = 292 |
| >gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-34
Identities = 71/197 (36%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V +ITL P +NAL ++ L + + + AIV+TG+ F+ G DI
Sbjct: 12 GRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMA 71
Query: 72 KVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
D+S M + + N + +KP++AAV G ALGGG ELAM C IAA
Sbjct: 72 ------DLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTA 125
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
+ G PE+ LGV+PG GG+QRL R VG +KA+++ L + + + E + GL+ VV +++L
Sbjct: 126 KFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKL 185
Query: 190 LKVSRLWALDIAARRKP 206
L + A IA+ P
Sbjct: 186 LDEALAAATTIASFSLP 202
|
Length = 257 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-34
Identities = 76/206 (36%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
MA P T+E V I+TL P V NAL + L++ F++ + + ++TG G
Sbjct: 1 MALPFSTVE-RKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGD 59
Query: 60 R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--DCKKPIVAAVEGLALGGGLEL 116
+ FS G D+ K AG P+ L D KPI+AAV G+A+GGG EL
Sbjct: 60 KAFSAGNDL----KEQAAGGKRGWPESGF---GGLTSRFDLDKPIIAAVNGVAMGGGFEL 112
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
A+ C +AA LPE +G+ GG RLPR +GL +A+ M+L + +T+ EG +
Sbjct: 113 ALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLE 172
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
LG ++ VV + ELL + WA DI A
Sbjct: 173 LGFVNEVVPAGELLAAAERWADDILA 198
|
Length = 259 |
| >gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 75/199 (37%), Positives = 112/199 (56%), Gaps = 14/199 (7%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
DG+A++TL P +NAL ++ L + + + V+A++LTG G R FS G DI+ F
Sbjct: 11 DGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEF 70
Query: 71 QKVHGAGDVSLMPDVSVELVV-------NLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
+ V+ DV++ V +E KP++AAV GLA GGG E+ H
Sbjct: 71 -----SASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLA 125
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
IA+ + PE+ LG+ P FGGTQRLPRL G +A+E++L + ++E ++GL++AV
Sbjct: 126 IASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAV 185
Query: 184 VTSEELLKVSRLWALDIAA 202
V EELL +R A I
Sbjct: 186 VPHEELLPAARALARRIIR 204
|
Length = 260 |
| >gnl|CDD|235707 PRK06130, PRK06130, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 75/232 (32%), Positives = 117/232 (50%), Gaps = 10/232 (4%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
++ +A+IG G MGSGIA + VVL +V L + IE V
Sbjct: 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIE--RALGVYAPLGIAS 61
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
++M G+ D+VIEAV E + LK+ +F+ L+ C P I ATNTS +
Sbjct: 62 AGMGRIRMEAGLAA--AVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLP 119
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + + + +R +G HFF+PA V+PL+E+VR ++TS Q + M + + I K PV+V
Sbjct: 120 ITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVK 179
Query: 488 -NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPI---GPFQ 533
+ GF NR ++ A L+ GV ID ++ S G+ + GP +
Sbjct: 180 KDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLE 231
|
Length = 311 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-33
Identities = 71/192 (36%), Positives = 106/192 (55%), Gaps = 9/192 (4%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V ++TL P NAL ++ L ++ E A + + V+TGN F+ G D+N
Sbjct: 10 QRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMA 69
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ A + D +L ++ KP++AAV G ALG G ELA+ C IA +
Sbjct: 70 EKDLAA---TLNDPRPQLWQR-LQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARF 125
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
GLPE+TLG++PG GGTQRL R VG S A +M+L +SIT+++ + GL+ V E L
Sbjct: 126 GLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPE--LT 183
Query: 192 VSRLWALDIAAR 203
+ R AL +A++
Sbjct: 184 LER--ALQLASK 193
|
Length = 255 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 7e-32
Identities = 71/192 (36%), Positives = 104/192 (54%), Gaps = 5/192 (2%)
Query: 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
D VA++TL NPPVNAL+ + L F+E + R DV+ +VLTG G F G D+
Sbjct: 12 DHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPD 71
Query: 73 VH-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
V G GD+ + E + I +C KP++AAV G ALG GL L C +A+
Sbjct: 72 VIKGPGDLRAHNRRTRE-CFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVF 130
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
GLPE+ +G+ GG + RL G S MML + + E ++ G+I+A + EEL+
Sbjct: 131 GLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMP 187
Query: 192 VSRLWALDIAAR 203
+ A +IA++
Sbjct: 188 EAMEIAREIASK 199
|
Length = 257 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-30
Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 10/220 (4%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
G+ IT NP NA+++ + L A D ++ +VLTG G + F G DI+ F
Sbjct: 19 GGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQF 78
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
++ + + +VE + D KP +A + G +GGG+ +A+ C RIAA ++
Sbjct: 79 EESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSR 138
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G+P LG+ G+ G + L LVG S A ++ ++ + E ++GL+ V +++L
Sbjct: 139 FGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198
Query: 191 KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLA 230
+A IA +R+ R E+LK
Sbjct: 199 TALADYAATIAGNAPLTLRAAKRA--------IAELLKDE 230
|
Length = 269 |
| >gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 1e-29
Identities = 71/196 (36%), Positives = 104/196 (53%), Gaps = 19/196 (9%)
Query: 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQKV 73
VAI+TL NPP N + LK E + DV A+V+TG+G +F S G D+N+F
Sbjct: 13 VAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLF--- 69
Query: 74 HGAGDVSLMPDVSVELVVNLIE------DCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
GD V+ E+ E + +AA+ G A+GGGLE A+ C RIA
Sbjct: 70 -ADGD----KAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEE 124
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
+ Q+ LPE ++G++P GGTQ LP LVG A M+L + + + ++GL++ VV
Sbjct: 125 QAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKG 184
Query: 188 ELLKVSRLWALDIAAR 203
E +R AL +A +
Sbjct: 185 E----AREAALALAQK 196
|
Length = 258 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-27
Identities = 63/201 (31%), Positives = 98/201 (48%), Gaps = 7/201 (3%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
D V +TL N P NAL+ + L EA + DDV +VLTG F G D+
Sbjct: 12 DRVRTLTL-NRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDL--- 67
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
K G + ++ +KP++ A+ G A+ GGLELA+ C IA+ + +
Sbjct: 68 -KELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERAR 126
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+G++PG+G + RLP+ VG+ +A M L + + + + GL+ VV +ELL
Sbjct: 127 FADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELL 186
Query: 191 KVSRLWALDIAARRKPWIRSL 211
+R A IA +R+L
Sbjct: 187 PRARRLAASIAGNNPAAVRAL 207
|
Length = 258 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 20/202 (9%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGVA ITL P N L A L+D F E DDVKA+VLTG GG F G D
Sbjct: 25 DGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGD----- 79
Query: 72 KVHGA-GDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
VH G ++ M EL +V + C +PI+AAV+G+ G G LAM
Sbjct: 80 -VHEIIGPLTKMD--MPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASD 136
Query: 122 ARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
R+ P + +G+ G LPR++G +A E++ +S+++EEG + G
Sbjct: 137 LRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFF 196
Query: 181 DAVVTSEELLKVSRLWALDIAA 202
+ +V EELL ++ A +AA
Sbjct: 197 NRLVEPEELLAEAQALARRLAA 218
|
Length = 277 |
| >gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 11/194 (5%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ GVA I L P NAL ++A L+ F + V+A+VL G G F G D++
Sbjct: 9 DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSEL 66
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
++ AG+ + V + I+ + P++AA+ G +GGGLELA H R+A T
Sbjct: 67 RE-RDAGEG-MHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY 124
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV-TSEEL 189
LPE G+ G GG+ R+PRL+G+++ +MML + ++EG +LGL +V E L
Sbjct: 125 FALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEAL 184
Query: 190 LKVSRLWALDIAAR 203
K A+++A R
Sbjct: 185 DK-----AMELARR 193
|
Length = 255 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-26
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 5/192 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + +EV G+A IT P NA+ + GL + E + ++A+VL G G
Sbjct: 5 TSTDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGD 63
Query: 60 R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
+ F G DI F+ A D ++ + ++ V+ +E + P +AA+ G +GGG +A
Sbjct: 64 KAFVAGTDIAQFRAFSTAED-AVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAA 122
Query: 119 GCHARIAAPKTQLGLP-ELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
C RIA P + G P TLG RL L+G ++ +M+ ++ + +EE
Sbjct: 123 ACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAA 182
Query: 178 GLIDAVVTSEEL 189
GL++ VV L
Sbjct: 183 GLVNEVVEDAAL 194
|
Length = 262 |
| >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-26
Identities = 67/203 (33%), Positives = 99/203 (48%), Gaps = 10/203 (4%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
+ V +E V IIT+ P NA+ + GL +E + D+ +LTG GG
Sbjct: 1 MSDEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGT 59
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE-DCKKPIVAAVEGLALGGGLELAMG 119
F G D+ F G+ P + L E +KP++AAVEG AL GG ELA+
Sbjct: 60 FCAGMDLKAF----ARGE---RPSIPGRGFGGLTERPPRKPLIAAVEGYALAGGFELALA 112
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C +AA + GLPE+ G++ GG RLPR + A+E+ L +T+E +LGL
Sbjct: 113 CDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGL 172
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
++ + + L + A IAA
Sbjct: 173 VNRLTEPGQALDAALELAERIAA 195
|
Length = 254 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
MA V EV + GVA+ITL P +NA + A + + A + V+ IVLTG G
Sbjct: 2 MAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGR 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIED----------CKKPIVAAVEGLA 109
F G D+ Q + D DV V N D +KP++AA+ G
Sbjct: 62 GFCAGADMGELQTI-DPSDGRRDTDVR-PFVGNRRPDYQTRYHFLTALRKPVIAAINGAC 119
Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
G GL A+ C R AA + G+I G + LPRLVG + A++++L +++
Sbjct: 120 AGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTF 179
Query: 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
+EE +LGL++ VV +EL++ + +A D+A P
Sbjct: 180 YAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSP 216
|
Length = 272 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 8/190 (4%)
Query: 14 GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
G+A IT IN P +NAL P++ L F+ D VK I+LTG+G F G D+ +
Sbjct: 19 GIATIT-INRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAE 77
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+V GDV DV + V + E C+KPI+ A+ G A+ G E+A+ C +A+ +
Sbjct: 78 EVF-KGDVK---DVETDPVAQM-ERCRKPIIGAINGFAITAGFEIALACDILVASRGAKF 132
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
G+ P +G +Q+L R++G ++A E+ L + +T+E + GL++ VV ELLK
Sbjct: 133 IDTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLK 192
Query: 192 VSRLWALDIA 201
+R A I
Sbjct: 193 KAREVAEAII 202
|
Length = 265 |
| >gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 5/231 (2%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ- 366
++ V V G G++GS IA + V + +++ E L K + I V + T+
Sbjct: 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKE 62
Query: 367 DKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
A AL + D +E KD D+VIEAV E +K + EL K P I ATN+ST
Sbjct: 63 APAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST 122
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
+ + E T ++ + HF + EI+ T +V ++ K I VP+V
Sbjct: 123 LLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIV 182
Query: 486 VGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQ 533
+ G+ +N P+ +A L + GV D ID + G P+GPF
Sbjct: 183 LKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFG 233
|
Length = 287 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 9/197 (4%)
Query: 14 GVAIITLINPPV-NALAIP-IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+ +T+ P NAL+ V L + V+A++LTG G FS G ++ +
Sbjct: 12 HIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMR 71
Query: 72 KVHGAGDVSLMPDV------SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
GA S D+ ++ + + + + P++AAV G A+G G +LA C RIA
Sbjct: 72 ARVGAFGGSPA-DIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIA 130
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
+ + + LG+IPG GG LPR++G+++A EM +I + + GL+ VV
Sbjct: 131 SETARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVP 190
Query: 186 SEELLKVSRLWALDIAA 202
+++LL +R A IAA
Sbjct: 191 ADQLLPAARALAERIAA 207
|
Length = 266 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 5e-25
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 8/192 (4%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINV 69
+ G+ + L P NA+ ++ GL+ FE+ + + ++L + G F G D+
Sbjct: 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKE 61
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
++ +V + S+ + +E P +A VEG ALGGGLELA+ C RI +
Sbjct: 62 -RRKMSPSEVQKFVN-SLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEA 119
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
GLPE L +IPG GGTQRLPRLVG S+A E++ + I + E +GL++ V + E
Sbjct: 120 VFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGE- 178
Query: 190 LKVSRLWALDIA 201
+ AL++A
Sbjct: 179 ---AYEKALELA 187
|
Length = 251 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 3e-24
Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 20/213 (9%)
Query: 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDI--- 67
DG+A ITL P +NA + + L + F+ A + D V+A+++TG G F G D+
Sbjct: 11 ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAG 70
Query: 68 -NVF----QKVHGAGDVSLMPDVSVELV------VNL-IEDCKKPIVAAVEGLALGGG-- 113
N F + D D S + V V L I D KP++AAV G A+G G
Sbjct: 71 GNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGAT 130
Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
+ LAM R+A+ + G G++P + LPRLVGL A+E + + ++E
Sbjct: 131 MTLAM--DIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQE 188
Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206
GL+ +V +ELL +R A +IA P
Sbjct: 189 ALDGGLVRSVHPPDELLPAARALAREIADNTSP 221
|
Length = 296 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 67/213 (31%), Positives = 100/213 (46%), Gaps = 9/213 (4%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
+ E DG+A IT+ P V NA V + ++A D+ ++LTG G + F
Sbjct: 4 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCS 63
Query: 64 GFDINVFQKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
G D QKV G D S + ++V V I C KP++A V G A+GGG L M C
Sbjct: 64 GGD----QKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHMMC 119
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
IAA + G +G G G+ + R+VG KA E+ L + +++ +GL+
Sbjct: 120 DLTIAAENARFGQTGPKVGSFDGGYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLV 179
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213
+ VV +L K + W +I + IR L
Sbjct: 180 NTVVPLADLEKETVRWCREILQKSPMAIRMLKA 212
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 12/196 (6%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
N + ITL P NA+ + + F +++ ++TG G + FS G+D+
Sbjct: 10 NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDL--- 66
Query: 71 QKVHGAGDVSLMP--DVSVELVVNLIE--DCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
K G+ P D L E D KP++AAV G A GGG ELA+ + A
Sbjct: 67 -KAAAEGE---APDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCA 122
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
LPE LG++P GG RLP+ + + A EM++ + + +EE + G+++ VV
Sbjct: 123 DNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQ 182
Query: 187 EELLKVSRLWALDIAA 202
EL+ +R A +
Sbjct: 183 AELMDRARELAQQLVN 198
|
Length = 261 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-23
Identities = 63/190 (33%), Positives = 90/190 (47%), Gaps = 12/190 (6%)
Query: 7 TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
T+E+ G VA +TL P V NA ++A L F + D V+A+VL G G F G
Sbjct: 5 TLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAG 64
Query: 65 FDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
D+N +K+ G D D + L ++ I C KP++A V G A GG+ L C
Sbjct: 65 ADLNWMKKMAGYSDDENRAD-ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDI 123
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLP---RLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+AA L E+ LG+IP P R +G A L ++ + E +LGL
Sbjct: 124 AVAADHAVFCLSEVRLGLIP----ATISPYVIRAMGERAARRYFLTAERFDAAEALRLGL 179
Query: 180 IDAVVTSEEL 189
+ VV +E L
Sbjct: 180 VHEVVPAEAL 189
|
Length = 262 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 12/208 (5%)
Query: 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
T+E+ D VA +TL P NA+ + L + F + +V+A+VL+G+G FS G
Sbjct: 8 FTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYG 66
Query: 65 FDI----NVFQKVH---GAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLE 115
D+ VF ++ A + + + L +N + DC+KP++AAV+G +GGG++
Sbjct: 67 IDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVD 126
Query: 116 LAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
L C R A+ + + E+ LG++ G QRLPR++G E+ L + I + E
Sbjct: 127 LISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAE 186
Query: 176 KLGLIDAVV-TSEELLKVSRLWALDIAA 202
K+GL++ V ++ LL + A +IAA
Sbjct: 187 KIGLVNRVYDDADALLAAAHATAREIAA 214
|
Length = 272 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 3e-23
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 11/210 (5%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEE-ATSRDDVKAIVLTGNG 58
M +VT++ + GVAI+TL +P V NA++I ++ GL + + + +V+ +VLTG G
Sbjct: 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAG 59
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL------VVNLIEDCKKPIVAAVEGLALGG 112
F G N+ + G + D L + + + PIV AV G A G
Sbjct: 60 RGFCTG--ANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGV 117
Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
G+ A+ + A +G++P G T LPRLVG ++A+E+ LL + + +E
Sbjct: 118 GMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAE 177
Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
+ GL++ VV EL+ + A ++A
Sbjct: 178 TALQWGLVNRVVDDAELMAEAMKLAHELAN 207
|
Length = 266 |
| >gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 3e-22
Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
GVA +T+ N +N L P++ L + DV+ +VL G G + F GG DI
Sbjct: 15 RGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEM 74
Query: 71 QKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
+L + + L + P++A + G LGGGLELA C RI
Sbjct: 75 --------ATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRI 126
Query: 125 AAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184
AA Q G+PE+ +G IP LPRL+G ++ ++L ++I + + GL+D VV
Sbjct: 127 AAHDAQFGMPEVRVG-IPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVV 185
Query: 185 TSEEL 189
EL
Sbjct: 186 PLAEL 190
|
Length = 256 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 4e-22
Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 25/217 (11%)
Query: 14 GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
+A+ITL P +N++A ++ LK+ E + + V+ +VLTG G FS G D K
Sbjct: 19 EIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGAD----HK 74
Query: 73 VHGAGDVSLMPDV-----------SVELVVNLIEDCKK---PIVAAVEGLALGGGLELAM 118
G +P V S+EL+ ++I ++ P++AAV G A+GGGL LA+
Sbjct: 75 SAGV-----VPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLAL 129
Query: 119 GCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
R+A+ + G+ G + LPR +G S+A E+ML + + +EE ++
Sbjct: 130 AADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERI 189
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT 214
GL+ V E+LL A +A +P I RT
Sbjct: 190 GLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRT 226
|
Length = 276 |
| >gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 4e-22
Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
N V + L P V NA+ P A L D F + D VL G GG F G D+
Sbjct: 10 NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAV 69
Query: 71 Q-----KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
++H +GD + P + ++ KP++AAV G A+ GGLELA+ C R+A
Sbjct: 70 GTGRGNRLHPSGDGPMGPS---RMRLS------KPVIAAVSGYAVAGGLELALWCDLRVA 120
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
G+ GV GGT RLPRL+G S+A++++L + + ++E +GL + VV
Sbjct: 121 EEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVP 180
Query: 186 SEELLKVSRLWALDIAA 202
+ + A ++AA
Sbjct: 181 KGQARAAAEELAAELAA 197
|
Length = 254 |
| >gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 5e-22
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 6/189 (3%)
Query: 11 GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ G+A + L PP NAL + + E RDDV A++L G FS G D+
Sbjct: 14 QDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPEL 73
Query: 71 QKVHG--AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ + A + + +V+ V + KP VAA+ G ALG GL LA+ R++
Sbjct: 74 RTLSAQEADTAARVRQQAVDAVAAI----PKPTVAAITGYALGAGLTLALAADWRVSGDN 129
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
+ G E+ G+ P G RL R G S+A E++ + +EE LGLID +V ++
Sbjct: 130 VKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDD 189
Query: 189 LLKVSRLWA 197
+ + WA
Sbjct: 190 VYDAAAAWA 198
|
Length = 222 |
| >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 3e-21
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 3 APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
P +E I+T+ P NAL+ ++ + D ++ + D+++ +LTG GG F
Sbjct: 4 GPHALVE-QRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAF 62
Query: 62 SGGFDINVFQKVH-------GAGDVSLMPDVSVELVVNLIED--CKKPIVAAVEGLALGG 112
G D+ K G+ D S + L++ KP++AAVEG A+ G
Sbjct: 63 CAGMDLKAATKKPPGDSFKDGSYDPSRID--------ALLKGRRLTKPLIAAVEGPAIAG 114
Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
G E+ G R+A + G+ E + P G RL R + + A +++L + IT+
Sbjct: 115 GTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAA 174
Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
E ++GLI VV + L AL++A
Sbjct: 175 EAKEIGLIGHVVPDGQALDK----ALELAEL 201
|
Length = 263 |
| >gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 4e-21
Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 12/214 (5%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG---RF 61
+T E DG+A IT+ P V NA V + D F +A +V I+LTGNG F
Sbjct: 20 ITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAF 79
Query: 62 SGGFDINVFQKVHGAG----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
G D QKV G D +P ++V + LI KP++A V G A+GGG L
Sbjct: 80 CSGGD----QKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLH 135
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
+ C IAA G +G G G+ L R+VG KA E+ L + +EE +
Sbjct: 136 VVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEEALDM 195
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
GL++ VV +L K + WA ++ A+ +R L
Sbjct: 196 GLVNTVVPHADLEKETVQWAREMLAKSPTALRML 229
|
Length = 282 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 5e-21
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 25/196 (12%)
Query: 4 PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
RV++ + DG+A + L P +NAL + L + ++A++L+G GG F
Sbjct: 3 DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFC 61
Query: 63 GGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE--------------DCKKPIVAAVEGL 108
G D+ V+ P +V+L+ + P++AA+EG+
Sbjct: 62 AGLDV---------KSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGV 112
Query: 109 ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168
GGGL++A+G RIAAP T+L + E G++P GT L LV A E+ ++
Sbjct: 113 CFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARV 172
Query: 169 ITSEEGWKLGLIDAVV 184
++EE +LGL+ V
Sbjct: 173 FSAEEALELGLVTHVS 188
|
Length = 262 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 6e-20
Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 13/185 (7%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
GVA +TL P +N+ + L++ E RDD +A++LTG G F G D++
Sbjct: 7 AGVARLTLNRPDKLNSFTAEMHLELREALERV-ERDDARALMLTGAGRGFCAGQDLSERN 65
Query: 72 KVHGAGDVSLMPDV--SVEL----VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
G PD+ ++E +V + P+V AV G+A G G LA+ C +A
Sbjct: 66 PTPGG-----APDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLA 120
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
A + +G+IP GGT LPRLVG ++A+ + +L + + + GLI VV
Sbjct: 121 AESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVD 180
Query: 186 SEELL 190
L+
Sbjct: 181 DAALM 185
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 7e-20
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
+T G+A +T+ PPVNAL L D A + D + +VL G F+ G
Sbjct: 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGV 62
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVN--------LIEDCKKPIVAAVEGLALGGGLELA 117
DI Q P + + N + +C P++AAV G LGGG+ L
Sbjct: 63 DIKELQAT---------PGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLV 113
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
+A+ GLPE+ G + G L RLV + + +IT+ E
Sbjct: 114 GNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHF 170
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209
G ++ VV ++L + + A IAA+ IR
Sbjct: 171 GSVEEVVPRDQLDEAALEVARKIAAKDTRVIR 202
|
Length = 249 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 8e-20
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 14/210 (6%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+A ++ G ++TL NP NAL + A + A ++A+VLTG GG
Sbjct: 1 MSAELLSRREG--STLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGG 58
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGG 113
F G ++N + + P V S++ + + I KP++AAVEG A G G
Sbjct: 59 FFCAGGNLNRL-----LENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAG 113
Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
LA+ C +AA + + + +G+ P GG+ L R + A E++L K I++E
Sbjct: 114 FSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAER 173
Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
LG+++ + + L + A +AA
Sbjct: 174 LHALGVVNRLAEPGQALAEALALADQLAAG 203
|
Length = 260 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 9e-20
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 12/195 (6%)
Query: 21 INPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV----- 73
+N P NAL++ +V I+L+G G F G D+ +
Sbjct: 23 LNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSS 82
Query: 74 ---HGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
G L + ++ + IE C+KP++AA+ G +GGG+++ C R +
Sbjct: 83 SGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDA 142
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EE 188
+ E+ L + G QRLP +VG A+E+ L + + E +LGL+ V S E+
Sbjct: 143 FFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKED 202
Query: 189 LLKVSRLWALDIAAR 203
L + RL A IAA+
Sbjct: 203 LDEGVRLIAEGIAAK 217
|
Length = 275 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-19
Identities = 66/229 (28%), Positives = 98/229 (42%), Gaps = 10/229 (4%)
Query: 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
V ++V +DGVA+IT+ +P NA+ + A L+ A + DV A+V+TG G F
Sbjct: 2 MDPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAF 60
Query: 62 SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G D+ G + + + + C P +AAV G A+G GL LA+
Sbjct: 61 CAGADLTALGAAPGRPAEDGLRRIYDGFLA--VASCPLPTIAAVNGAAVGAGLNLALAAD 118
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
RIA PK LG+ PG G T L R VG A +L +E + GL
Sbjct: 119 VRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIR----SLHRTDKLGSLSEAREV 226
V ++ + + A AA + + S+ T L + A E
Sbjct: 179 MVA--DDPVAAALELAAGPAAAPRELVLATKASMRATASLAQHAAAVEF 225
|
Length = 249 |
| >gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 52/210 (24%), Positives = 92/210 (43%), Gaps = 14/210 (6%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
M V + +G+A +T+ V NA + + L + F+ K ++LTG
Sbjct: 1 MMMKVVELREVEEGIAQVTM-QDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYP 59
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
F+ G + G + + + +L +C P++AA++G A+GGGL L +
Sbjct: 60 NYFATGGTQEGLLSLQ-TGKGT----FTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGL 114
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
+ + ++ + G PG G T LP +GL+ EM+L ++ E K G
Sbjct: 115 YADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRG 174
Query: 179 LIDAVVTSEELLKVSRLWALDIAAR--RKP 206
+ V+ E+L+ AL++A KP
Sbjct: 175 VPFPVLPRAEVLEK----ALELARSLAEKP 200
|
Length = 249 |
| >gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-17
Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
DG+A IT+ P V NA V + D F +A D++ I+LTG G + F G D
Sbjct: 21 DGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGD---- 76
Query: 71 QKVHGAG---DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
QKV G G D +P ++V + LI C KP++A V G A+GGG L + C IAA
Sbjct: 77 QKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAAD 136
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
G +G G G L R+VG KA E+ L + ++E +GL++ VV
Sbjct: 137 NAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLA 196
Query: 188 ELLKVSRLWALDI 200
+L K + W ++
Sbjct: 197 DLEKETVRWCREM 209
|
Length = 273 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 81.9 bits (202), Expect = 2e-17
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 9/195 (4%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
+G+A I IN P +NA L ++A + IVL G G + F G D +
Sbjct: 10 NGIAWIM-INRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQST 68
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
+ +P +E + + I D KP++A V+G A+GGG L C IA+ K
Sbjct: 69 HDGGYDGRGTIGLP---MEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKA 125
Query: 130 QLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
Q G +G V PG+ GT L R+VG KA E+ L + T++E +GL++AVV ++
Sbjct: 126 QFGQVGPKVGSVDPGY-GTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQ 184
Query: 189 LLKVSRLWALDIAAR 203
L + W +I +
Sbjct: 185 LDAEVQKWCDEIVEK 199
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|181340 PRK08269, PRK08269, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 4/144 (2%)
Query: 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446
D D+V EAV E + K++ L + I+A+ TST + + + +R + AH+
Sbjct: 79 DADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHW 138
Query: 447 FSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR-AFFPYSQSA 505
+PA++MPL+E+ ++ T V+ L + + I KVPVV G G+ V R +++A
Sbjct: 139 LNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAA 198
Query: 506 RLLVSLGV-DVFRIDSAIR-SFGL 527
R +V GV ID AIR FGL
Sbjct: 199 R-MVEEGVASAEDIDKAIRTGFGL 221
|
Length = 314 |
| >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-17
Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 3/186 (1%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
+G+A IT+ P NA V L+ F +A V I+LTG G + F G D V
Sbjct: 75 EGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVR 134
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
K G ++V + I KP++A V G A+GGG L M C IAA
Sbjct: 135 GK-DGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G +G G+ + RLVG KA EM L++ T+ E K+GL++ VV +EL
Sbjct: 194 FGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELE 253
Query: 191 KVSRLW 196
+ W
Sbjct: 254 GETVKW 259
|
Length = 327 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 62/210 (29%), Positives = 103/210 (49%), Gaps = 15/210 (7%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
M + + + GVA +TL N P +N+ + L++ ++ D +A++LTG G
Sbjct: 1 MMYETILLAI-EAGVATLTL-NRPDKLNSFTREMHRELREALDQV-EDDGARALLLTGAG 57
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPD--VSVEL----VVNLIEDCKKPIVAAVEGLALGG 112
F G D+ G MPD S+E +V + P++AAV G+A G
Sbjct: 58 RGFCAGQDLADRDVTPGGA----MPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGA 113
Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
G LA+ C +AA + +G++P GGT LPRLVG+++A+ + LL + +++E
Sbjct: 114 GANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAE 173
Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
+ + GLI VV L ++ A +A
Sbjct: 174 QAEQWGLIWRVVDDAALADEAQQLAAHLAT 203
|
Length = 262 |
| >gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 3e-16
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 4/191 (2%)
Query: 14 GVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
GV +I P NA+ + A + + A + D ++A V G G FS G D+ F
Sbjct: 15 GVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLA 74
Query: 73 VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
G S ++ ++ ++ L E +KPIV+ V+GLA+G G + + C A+P++
Sbjct: 75 A-AMGGTSFGSEI-LDFLIALAE-AEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFR 131
Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
P + L ++P G + PRL+G +A ++ L + ++E + GLI +V E +
Sbjct: 132 TPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAE 191
Query: 193 SRLWALDIAAR 203
+ A ++AA+
Sbjct: 192 TLKAAEELAAK 202
|
Length = 251 |
| >gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 65/230 (28%), Positives = 90/230 (39%), Gaps = 36/230 (15%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M V EV +A ITL P NA ++ L F A + D V+ IVL G G
Sbjct: 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGK 59
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----------------------IED 96
FS G D+ D PD L + D
Sbjct: 60 HFSAGHDLGSGTPGR---DRDPGPDQHPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRD 116
Query: 97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG---FGGTQRLPRL 153
KP +A V+G + GGL LA C +A+ P + +G IPG F L
Sbjct: 117 LPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMG-IPGVEYFAHPWEL--- 172
Query: 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
G KA E++ +T++E +LG+++ VV +EL + A IAA
Sbjct: 173 -GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAM 221
|
Length = 288 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 5e-16
Identities = 64/204 (31%), Positives = 99/204 (48%), Gaps = 11/204 (5%)
Query: 4 PRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFS 62
P + + GV I L P NA + L D + + DV+ +++ G G FS
Sbjct: 11 PALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFS 70
Query: 63 GGFDINVFQKVHGAGDVSLMPDVSVE---LVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
G D+ + +++ A D + V E LV N+I +C KPIV+A+ G A+G GL A+
Sbjct: 71 AGGDLALVEEM--ADDFEVRARVWREARDLVYNVI-NCDKPIVSAIHGPAVGAGLVAALL 127
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
IAA ++ LGV G P L G++KA +LL + ++ EE ++GL
Sbjct: 128 ADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGL 187
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ V +ELL AL++A R
Sbjct: 188 VSLAVDDDELLPK----ALEVAER 207
|
Length = 268 |
| >gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-15
Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 14/184 (7%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGVA ITL + VNAL+ ++ L ++A DD +V+TG G FSGGFD+ V
Sbjct: 10 EDGVATITLDDGKVNALSPAMIDALNAALDQA--EDDRAVVVITGQPGIFSGGFDLKVMT 67
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
GA + L L+ KP++ A G A+ G L + RI +
Sbjct: 68 S--GAQAAIALLTAGSTLARRLLSH-PKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFK 124
Query: 131 LGLPELTLG-VIPGFG---GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
+GL E+ +G +P RL +A+ + ++ EE G +D VV
Sbjct: 125 IGLNEVAIGMTMPHAAIELARDRLTP-SAFQRAV---INAEMFDPEEAVAAGFLDEVVPP 180
Query: 187 EELL 190
E+LL
Sbjct: 181 EQLL 184
|
Length = 229 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 54/177 (30%), Positives = 84/177 (47%), Gaps = 3/177 (1%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
VA I L P NAL P++ L +E + +VL GNG FS G DI +
Sbjct: 13 EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMM 71
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+ + + E+VV L K ++A+ G A G GL +A+ IA +
Sbjct: 72 LSSNDESKFDGVMNTISEIVVTLY-TMPKLTISAIHGPAAGLGLSIALTADYVIADISAK 130
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
L + + +G+IP GG L + VG +KA +++ K +++ E LGLID V+ +
Sbjct: 131 LAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGD 187
|
Length = 260 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 21/195 (10%)
Query: 7 TMEVGND--GVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
T+ + D GVA +TL P NAL+ ++A L + V+ +VLTG G F
Sbjct: 5 TIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCA 64
Query: 64 GFDINVFQ---------KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
G D+ + ++ A +++M + + D KP++ ++G A GGG+
Sbjct: 65 GGDLGWMRAQMTADRATRIEEARRLAMM--------LKALNDLPKPLIGRIQGQAFGGGV 116
Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
L C IA + GL E LG+IP + R +G + A + + ++ +EE
Sbjct: 117 GLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANARRVFMSARLFDAEEA 175
Query: 175 WKLGLIDAVVTSEEL 189
+LGL+ VV +E L
Sbjct: 176 VRLGLLSRVVPAERL 190
|
Length = 262 |
| >gnl|CDD|236044 PRK07531, PRK07531, bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 30/236 (12%)
Query: 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQ 366
+ K A IGGG++G G A +L I V + + + E I + AN
Sbjct: 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERI-IGEVLAN------------ 49
Query: 367 DKANNALKMLKGV-------LDYSE-----FKDVDMVIEAVIESVPLKQKIFSELEKACP 414
A A ML L + D + E+V E + LK+++ +E++ A
Sbjct: 50 --AERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAAR 107
Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
P ++ ++TS + + E + +R+ AH ++P +++PL+E+V +TS + I
Sbjct: 108 PDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKE 167
Query: 475 VGKIIKKVPVVVGN-CTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGL 527
+ + I PV + F +R + A LV G+ ID IR SFGL
Sbjct: 168 ILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGL 223
|
Length = 495 |
| >gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 5e-15
Identities = 64/233 (27%), Positives = 97/233 (41%), Gaps = 21/233 (9%)
Query: 20 LINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79
L P N + ++A L E ++A++L G FS GA
Sbjct: 16 LARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFS-----------FGASVA 64
Query: 80 SLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133
MPD ++ +L + D PI+ AV G LGGGLE+A + AAP +LG
Sbjct: 65 EHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQ 124
Query: 134 PELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193
PE+ LGV + LP +G A +++ +SI EG ++GL +AV E +
Sbjct: 125 PEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPENAAL- 182
Query: 194 RLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQA 246
+ A +R R +LG + K+A ++A M H A
Sbjct: 183 AWFDEHPAKLSASSLRFAVRAARLGMNERVKA--KIAEVEALYLEELMATHDA 233
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251 |
| >gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-15
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 9/200 (4%)
Query: 6 VTMEVGNDG-VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
V+ E G V +I L P NA ++ L E + D+++ VL +G F+
Sbjct: 1 VSRER--RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTA 58
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G D+ AG P+ ++ + KP+V AV+G L G+EL +
Sbjct: 59 GLDLADVAPKLAAG-GFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIV 117
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
+AA T+ E+ G++P G T R P+ G A+ +L ++E +LGL+ V
Sbjct: 118 VAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEV 177
Query: 184 VTSEELLKVSRLWALDIAAR 203
V E L+ A+++A R
Sbjct: 178 VPPGEQLER----AIELAER 193
|
Length = 255 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 7e-15
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
D +A +TL P V N IP+ + + A V+ +++ NG FS G D+ +
Sbjct: 10 DDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMK 69
Query: 72 KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ DV + + ELV + I+ KP++ V+G G +A+ IA+ K
Sbjct: 70 RAVDEDDVQSLVKI-AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK 128
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
T+ + +G+ P GG L R +GL++A + + +++T+E+ + G + V SE+
Sbjct: 129 TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEK 188
Query: 189 LLKVSR 194
L K
Sbjct: 189 LEKTCE 194
|
Length = 255 |
| >gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 8e-15
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 9 EVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
V DG V I L P NAL + L++ +A + +AIVLTG G F G D
Sbjct: 3 GVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGAD 61
Query: 67 INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
++ G PD +E++ I+ P++AA+ G A+G GL+LAM C R+ A
Sbjct: 62 LS------GDVYADDFPDALIEMLHA-IDAAPVPVIAAINGPAIGAGLQLAMACDLRVVA 114
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
P+ P G+ +RL LVG +A M+L ++ +T+E+ G+ + + T
Sbjct: 115 PEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT- 173
Query: 187 EELLKVSRLWALDIAA 202
L ++ WA +IA
Sbjct: 174 ---LADAQAWAAEIAG 186
|
Length = 243 |
| >gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 34/83 (40%), Positives = 47/83 (56%)
Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161
+A V+G ALGGG E A+ H IA ++G PE+ + PG G L R VG A E
Sbjct: 125 IALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVGPKLAEE 184
Query: 162 MMLLSKSITSEEGWKLGLIDAVV 184
++L K T+EE +GL+D +V
Sbjct: 185 LILSGKLYTAEELHDMGLVDVLV 207
|
Length = 287 |
| >gnl|CDD|235706 PRK06129, PRK06129, 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 19/238 (7%)
Query: 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK 368
VA+IG GL+G A V L + + I + L L +
Sbjct: 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEA 62
Query: 369 ANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
+ L ++ ++ D D V E+ E++ LK+ +F+EL+ PPH ILA++TS +
Sbjct: 63 PDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALL 122
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ E + ++R + AH +P +++P++E+V T+ + + + + PV +
Sbjct: 123 ASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLR 182
Query: 488 -NCTGFAVNRAFFPYSQSARL-----LVSLGV-DVFRIDSAIRSFGLP-----IGPFQ 533
GF +NR Q A L LV+ GV V ID+ IR GL +GPF+
Sbjct: 183 REIDGFVLNRL-----QGALLREAFRLVADGVASVDDIDAVIRD-GLGLRWSFMGPFE 234
|
Length = 308 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
AP + E DGVA +TL P NAL+ ++A L+ + + V+ +VL G
Sbjct: 8 TEAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGK 66
Query: 60 RFSGGFDINVFQKVHGAGDVS-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
F G D+ + G L S V+ I +P++A V G+A G +L
Sbjct: 67 AFCAGHDLKEMRAARGLAYFRALFARCSR--VMQAIVALPQPVIARVHGIATAAGCQLVA 124
Query: 119 GCHARIAAPKTQLGLPELTLGVI---PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGW 175
C +AA + +P + +G+ P L R V +A+EM+L + I +
Sbjct: 125 SCDLAVAADTARFAVPGVNIGLFCSTPMVA----LSRNVPRKQAMEMLLTGEFIDAATAR 180
Query: 176 KLGLIDAVVTSEELLKVSRLWALDIAAR 203
+ GL++ VV ++ L A IAA+
Sbjct: 181 EWGLVNRVVPADALDAAVARLAAVIAAK 208
|
Length = 266 |
| >gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-14
Identities = 52/193 (26%), Positives = 86/193 (44%), Gaps = 7/193 (3%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR--FSGGFDINV 69
+ +A IT NP NAL+ ++ L + +R +++ ++L G +S G DI+
Sbjct: 12 NKIATITFNNPAKRNALSKVLIDDLMQALSDL-NRPEIRVVILRAPSGSKVWSAGHDIH- 69
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
++ G L D + ++ +I+ KP++A VEG GG EL M C IAA +
Sbjct: 70 --ELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTS 127
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
+ LGV G G EM + IT++ +G+++ VV EEL
Sbjct: 128 TFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEEL 187
Query: 190 LKVSRLWALDIAA 202
+ A I+
Sbjct: 188 EDFTLQMAHHISE 200
|
Length = 261 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-13
Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 7/157 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
V V + GVA +TL +P NAL+ +VA L D A + V+A+VLT GG
Sbjct: 3 PVDTLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGG 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
F G D++ + G GD + L I + KP++AA++G GG L
Sbjct: 62 TFCAGADLS--EAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGL 119
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153
C +A P++ L E +GV P LPRL
Sbjct: 120 VGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRL 156
|
Length = 260 |
| >gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-13
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 6 VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
V +EV DG+A +TL N P NA++ + + D + DD +VLTG G +S
Sbjct: 10 VKVEV-EDGIAWVTL-NRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSA 67
Query: 64 GFDIN-VFQKVHGAGDVSLMPDVSVELVVNLIEDC----------KKPIVAAVEGLALGG 112
G D+ F++ ++ L + + +KP +A V G GG
Sbjct: 68 GMDLKEYFRETDAQPEI---------LQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGG 118
Query: 113 GLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172
G + C IAA + Q GL E+ G+ PG G ++ + VG A+ ++ ++ T
Sbjct: 119 GFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGR 178
Query: 173 EGWKLGLIDAVVTSEEL 189
+ ++GL++ V +L
Sbjct: 179 KAAEMGLVNESVPLAQL 195
|
Length = 275 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 38/169 (22%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 13 DGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+G AI+T+ P +NAL + + K ++ + ++ +++TG G F G D++ F
Sbjct: 8 EGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEF- 66
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
A D ++ + ++ I K ++A+ G+ G + +A+ + A+ +
Sbjct: 67 ----APDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKF 122
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
LG+ G L +L G + E+++L T+EE + GL+
Sbjct: 123 VTAFQRLGLASDTGVAYFLLKLTG-QRFYEILVLGGEFTAEEAERWGLL 170
|
Length = 248 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 30/209 (14%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+T EV +A ITL P NA+ L+ E A V I+++G G F G
Sbjct: 12 MTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAG 70
Query: 65 FDINVFQKVHGAGDVSLMPDVSVELVVNLIED-----------------------CKKPI 101
+D++ + + +G + V +L +D KP
Sbjct: 71 YDLSAYAEGSSSGGGGGAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPT 130
Query: 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGFGGTQRLPRLVGLSKAI 160
VA V G + GG ++A+ C IAA ++G P + GV RL G +A
Sbjct: 131 VAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVPATGMWAYRL----GPQRAK 186
Query: 161 EMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
++ IT + + GL V EEL
Sbjct: 187 RLLFTGDCITGAQAAEWGLAVEAVPPEEL 215
|
Length = 302 |
| >gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 48/147 (32%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 14 GVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
GV +ITL N P +NAL++ ++ + + D V A+V+ G G R F G DI
Sbjct: 12 GVGVITL-NRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRAL 70
Query: 71 QKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ AGD E +N LI KP +A ++G+ +GGG+ ++ RI +
Sbjct: 71 YEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER 130
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVG 155
T++ +PE +G P GGT L R G
Sbjct: 131 TKMAMPETGIGFFPDVGGTYFLSRAPG 157
|
Length = 342 |
| >gnl|CDD|235938 PRK07112, PRK07112, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-12
Identities = 58/233 (24%), Positives = 91/233 (39%), Gaps = 29/233 (12%)
Query: 7 TMEVGNDG-VAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
T+ V G V + L P N + ++A D + +VL G F G
Sbjct: 5 TIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRC--EHAATIVVLEGLPEVFCFG 62
Query: 65 FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCK---KPIVAAVEGLALGGGLELAMGCH 121
D F + D + E + +L +A V G GG+
Sbjct: 63 AD---FSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD 119
Query: 122 ARIAAPKTQLGLPELTLGVIPG----FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
IA L EL G+IP F L R +G KA M L+++ +T+++ +
Sbjct: 120 IVIADETAPFSLSELLFGLIPACVLPF-----LIRRIGTQKAHYMTLMTQPVTAQQAFSW 174
Query: 178 GLIDAVVT-SEELLK--VSRLWALDIAA--RRKPWIRSLHRTDKLGSLSEARE 225
GL+DA S+ LL+ + RL L+ AA R K + +L +++ AR
Sbjct: 175 GLVDAYGANSDTLLRKHLLRLRCLNKAAVARYKSYASTL-----DDTVAAARP 222
|
Length = 255 |
| >gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 25/204 (12%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
A P V ++ G+A++ L PVN++ + + L D + V+ +V R
Sbjct: 8 GATPGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRR 67
Query: 61 --FSGGFDINVFQKVHGAGDVSLMPDVSVE-----------LVVNLIEDCKKPIVAAVEG 107
F+ G DI +++ P S +V L+ + V A+ G
Sbjct: 68 DVFTAGNDIA---ELYA-------PKTSAARYAEFWLTQTTFLVRLLRS-RLATVCAIRG 116
Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKAIEMMLLS 166
GG +++ C R+ + +GL E+ LG+ +P F + R++ A ++L
Sbjct: 117 ACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRG 176
Query: 167 KSITSEEGWKLGLIDAVVTSEELL 190
+ + E +LGLID VV + L+
Sbjct: 177 RLVRPAEAKQLGLIDEVVPAAALM 200
|
Length = 278 |
| >gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 8e-10
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V +ITL P N +++ +V+ L + E+ D V+ I++ G G FS G D+ +F
Sbjct: 19 GRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFY 78
Query: 72 KVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
D D +E+V + I KK VA V GL +GGG L + R+
Sbjct: 79 D-GRESD-----DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVV 132
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVG 155
KT PE ++G G + L RL G
Sbjct: 133 TEKTVFATPEASVGFHTDCGFSYILSRLPG 162
|
Length = 379 |
| >gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 9e-10
Identities = 66/229 (28%), Positives = 91/229 (39%), Gaps = 42/229 (18%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG------GR-FSGG 64
G I P V NA V L + A DV ++LTGNG G F G
Sbjct: 33 QGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSG 92
Query: 65 FDINVFQKVHG-------AGDVSLMPDVS-------VELVVNLIEDCKKPIVAAVEGLAL 110
D Q++ G GD + D + +E V LI K ++A V G A
Sbjct: 93 GD----QRIRGRDGYQYAEGDEADTVDPARAGRLHILE-VQRLIRFMPKVVIAVVPGWAA 147
Query: 111 GGG--------LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162
GGG L LA HAR +G G+G + L R VG A E+
Sbjct: 148 GGGHSLHVVCDLTLASREHARFKQTDADVG------SFDGGYG-SAYLARQVGQKFAREI 200
Query: 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSL 211
L ++ ++EE +G ++AVV EL + WA +I + +R L
Sbjct: 201 FFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRML 249
|
Length = 302 |
| >gnl|CDD|132244 TIGR03200, dearomat_oah, 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 57/214 (26%), Positives = 92/214 (42%), Gaps = 24/214 (11%)
Query: 16 AIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKV 73
A I L NP N+ +V + F A+S DV A+V T G + F G + + +
Sbjct: 39 AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEY 98
Query: 74 HGAGD-------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
+ AG+ + L D+ V+ I C KP++ V G+ +GGG E+ M IA
Sbjct: 99 Y-AGNPQEYRQYMRLFNDM-----VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQ 152
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
G G P G T LP ++G +A+ L + ++ + +LG+I VV +
Sbjct: 153 DLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPA 212
Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL 220
LKV + P + + D+ G +
Sbjct: 213 ---LKVDGKFV------ANPLVVTDRYLDEFGRI 237
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 360 |
| >gnl|CDD|168796 PRK07066, PRK07066, 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 12/224 (5%)
Query: 308 VRKVAVIGGGLMGSGI---ATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL 364
++ A IG G++GSG A AH L+ + L + AN + R L
Sbjct: 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV----ANAWPALERQGL 62
Query: 365 TQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424
+ L+ + + D D + E+ E LK ++ + +A P I+A++TS
Sbjct: 63 APGASPARLRFVATIEAC--VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTS 120
Query: 425 TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484
+ + + +R + H F+P +++PL+E++ ERT+ + + M + + + P+
Sbjct: 121 GLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPL 180
Query: 485 -VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIRSFG 526
V GF +R + A LV+ GV ID AIR FG
Sbjct: 181 HVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIR-FG 223
|
Length = 321 |
| >gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 8e-09
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
MA+ + V I+TL P +NAL+ +++ L F VK ++L G+G
Sbjct: 5 MASQSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGR 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVN-LIEDCKKPIVAAVEGLALGGGLELA 117
F G D+ + G+ L + S E ++N ++ K V+ + G+ +GGG ++
Sbjct: 65 AFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVS 124
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
+ RIA T +PE LG+ P G + L RL G
Sbjct: 125 VHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF 163
|
Length = 381 |
| >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 2e-08
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 20 LINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77
++N P +NAL IP+VA LK +E D+ +++ G+G F G D+ + G
Sbjct: 56 ILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEG 115
Query: 78 DVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPE 135
+V L V L KP VA ++G+ +G G +++ R+ KT PE
Sbjct: 116 NVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPE 175
Query: 136 LTLGVIPGFGGTQRLPRLVG 155
+ +G P G + L RL G
Sbjct: 176 VQMGFHPDAGASYYLSRLPG 195
|
Length = 407 |
| >gnl|CDD|216084 pfam00725, 3HCDH, 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 7e-07
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQ 533
GF VNR P A LV GV ID+A+R GLP+GPF+
Sbjct: 1 GFVVNRLLAPLLNEAIRLVEEGVATPEDIDAAMRLGLGLPMGPFE 45
|
This family also includes lambda crystallin. Some proteins include two copies of this domain. Length = 97 |
| >gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 51 AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
++ T G FS GFD+ Q A + + +V + P +AAV G A
Sbjct: 47 VLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHAS 106
Query: 111 GGGLELAMGCHARIAAPKTQ--LGLPELTLG-VIPGFGGTQRLPRLVGLSKAI------- 160
G LA+ H + K + L + E+ +G +P + L +A
Sbjct: 107 AAGFILAL-SHDYVLMRKDRGVLYMSEVDIGLPLP--------DYFMALLRAKIGSPAAR 157
Query: 161 -EMMLLSKSITSEEGWKLGLIDAVVTSEE 188
+++L + +T+EE ++G++D+ S E
Sbjct: 158 RDVLLRAAKLTAEEAVEMGIVDSAHDSAE 186
|
Length = 239 |
| >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 57/204 (27%), Positives = 80/204 (39%), Gaps = 43/204 (21%)
Query: 13 DGVAIITLINPP-VNALAIPIVAGLKDKFEEA---TSRD-DVKAIVLTGNGGRFSGGFDI 67
VA ITL P +N IV + D+ E A RD D+K IVL G G FSGG+D
Sbjct: 13 GPVATITLNRPEQLNT----IVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDF 68
Query: 68 NVFQKVHGAG----DVSLMPD-----------VSVELV-----VNLIEDCKKPIVAAVEG 107
G G ++M D V+ I KP++A V G
Sbjct: 69 -------GGGFQHWGEAMMTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHG 121
Query: 108 LALGGGLELAMGCHARIAAPKTQLGLPELTL--GVIPGFGGTQRLPRLVGLSKAIEMMLL 165
+GG + A+ IA+ +G P + + G L RL L+K L
Sbjct: 122 WCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYLTGMW----LYRL-SLAKVKWHSLT 176
Query: 166 SKSITSEEGWKLGLIDAVVTSEEL 189
+ +T + + LI+ V E L
Sbjct: 177 GRPLTGVQAAEAELINEAVPFERL 200
|
Length = 298 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 7 TMEVGND--GVAIITLINPPVN-ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
T+E+ D G A + L N A ++ L ++ S ++ ++L G G FS
Sbjct: 6 TIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSA 65
Query: 64 GFDINVFQKVHGAGDVSLMPDVS--VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G D+ Q+ + + D EL+ NL K P +A V+G A GG L L C
Sbjct: 66 GADLAWMQQSADLDYNTNLDDARELAELMYNLYR-LKIPTLAVVQGAAFGGALGLISCCD 124
Query: 122 ARIAAPKTQLGLPELTLGVIP 142
I A Q L E+ +G+ P
Sbjct: 125 MAIGADDAQFCLSEVRIGLAP 145
|
Length = 265 |
| >gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 13/174 (7%)
Query: 23 PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82
P +NAL + L+ ++ ++ +++ G+G F G DI + G
Sbjct: 56 PALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGS---- 111
Query: 83 PDVSVELV------VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136
PD E + L+ KP VA + G+ +GGG +++ R+A +T PE
Sbjct: 112 PDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPET 171
Query: 137 TLGVIPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
+G P G + L L G L + + + L ++ E GL + SEE+
Sbjct: 172 IIGFHPDAGASFNLSHLPGRLGEYLGLTGL--KLSGAEMLACGLATHYIRSEEI 223
|
Length = 401 |
| >gnl|CDD|213787 TIGR03222, benzo_boxC, benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 92 NLIEDCKK----PIVAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGF 144
N IED + +AAV G GGG ELA+ C + + + LPE+ LGV+PG
Sbjct: 109 NGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGT 168
Query: 145 GGTQRL--PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
GG R+ R V A + + + + + L+D VV + A ++AA
Sbjct: 169 GGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAA 228
Query: 203 R 203
+
Sbjct: 229 Q 229
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. Length = 546 |
| >gnl|CDD|181274 PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.001
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 102 VAAVEGLALGGGLELAMGCHARIAAP--KTQLGLPELT-LGVIPGFGGTQRL 150
+AAV G GGG ELA+ C + + + LPE+ LGV+PG GG R+
Sbjct: 127 IAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGGLTRV 178
|
Length = 550 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 539 | |||
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 100.0 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 100.0 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 100.0 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 100.0 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 100.0 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 100.0 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 100.0 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 99.96 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.85 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.82 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.81 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.78 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.77 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.74 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.74 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.69 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.69 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.66 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.65 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.65 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.65 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.64 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.64 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.62 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.58 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.58 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.58 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.58 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.57 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.57 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.57 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.55 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.55 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.55 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.55 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.54 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.53 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.53 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.51 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.51 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.51 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.5 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.49 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.49 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.48 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.48 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.48 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.47 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.47 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.45 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.44 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.43 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.42 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.42 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.38 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.38 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.37 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.37 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.36 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.36 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.35 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.32 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.32 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.3 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.29 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.29 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.28 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.27 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.24 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.23 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.23 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.22 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.2 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.19 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 99.15 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.15 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.13 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.13 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.12 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.09 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.09 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.07 | |
| PF00725 | 97 | 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal | 99.07 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.06 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.05 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.05 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 98.97 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.96 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 98.94 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.93 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.93 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 98.92 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.86 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.86 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.84 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.79 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.77 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.74 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 98.68 | |
| PRK10949 | 618 | protease 4; Provisional | 98.67 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 98.66 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.66 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 98.66 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.65 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.63 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 98.54 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.53 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.52 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 98.47 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.45 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.44 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 98.39 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.37 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.35 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.34 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.32 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.29 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.28 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 98.27 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.27 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.26 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.26 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 98.26 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.25 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 98.23 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.22 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 98.22 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 98.2 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.18 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.17 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 98.16 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.16 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 98.14 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.14 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 98.13 | |
| PLN02602 | 350 | lactate dehydrogenase | 98.13 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.11 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 98.09 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.07 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.04 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.04 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.03 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 98.03 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.02 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 98.01 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 97.99 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 97.98 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 97.97 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.95 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.94 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 97.94 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.91 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.9 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.89 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.87 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.84 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 97.84 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 97.84 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.84 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 97.82 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 97.82 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 97.8 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.79 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 97.79 | |
| PLN02928 | 347 | oxidoreductase family protein | 97.78 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 97.78 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.78 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 97.76 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 97.74 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.73 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 97.71 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.7 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.68 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 97.68 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.67 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.67 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 97.67 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 97.66 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.66 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.65 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.64 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.64 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.63 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.62 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.62 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 97.6 | |
| PLN00106 | 323 | malate dehydrogenase | 97.58 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.57 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 97.56 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.56 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.54 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 97.52 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.52 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.52 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.5 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 97.49 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.48 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.47 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.46 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 97.45 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.44 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 97.44 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.44 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 97.43 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.43 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.43 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.41 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 97.38 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 97.37 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 97.37 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 97.37 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.37 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.33 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.33 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.33 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.32 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.31 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 97.31 | |
| PRK10949 | 618 | protease 4; Provisional | 97.29 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 97.27 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 97.26 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 97.23 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 97.21 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 97.17 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.16 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.16 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.15 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 97.15 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.15 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 97.14 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.09 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.08 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.07 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.05 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.05 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.03 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.03 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 97.02 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.01 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.98 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.97 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.96 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.95 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 96.92 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.91 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.86 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.85 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.84 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.83 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 96.82 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.8 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.79 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.78 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 96.78 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.78 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.77 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.76 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.74 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.74 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.71 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.7 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.68 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 96.67 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.61 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.58 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.58 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.57 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.53 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.5 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.47 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 96.46 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.44 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.42 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.42 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.39 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.33 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.24 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.13 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.12 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.12 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.09 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.03 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.02 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.01 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.92 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 95.92 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 95.89 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.88 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.86 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.86 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.8 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.78 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.69 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 95.68 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.6 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 95.58 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.55 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.42 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 95.41 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.4 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 95.4 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 95.37 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 95.35 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 95.34 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.31 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.3 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.28 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 95.26 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 95.26 | |
| PF13766 | 118 | ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PD | 95.21 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 95.17 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 95.16 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.16 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.11 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.1 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.1 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.09 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.06 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 95.04 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 95.04 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.93 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.91 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.85 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.85 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.82 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.78 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.75 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 94.69 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.66 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.64 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.55 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.54 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.48 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 94.44 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.4 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 94.39 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 94.35 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.34 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 94.31 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.31 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.31 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.16 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.15 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.14 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 94.12 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 94.07 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 94.06 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.06 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 94.04 | |
| PRK05868 | 372 | hypothetical protein; Validated | 94.03 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 93.95 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 93.94 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 93.92 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.91 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.88 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 93.88 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.83 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 93.83 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 93.78 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 93.78 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 93.77 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 93.73 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 93.73 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 93.69 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.69 | |
| PRK08223 | 287 | hypothetical protein; Validated | 93.67 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 93.66 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 93.65 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 93.64 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 93.62 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 93.6 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 93.54 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 93.49 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 93.47 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.44 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 93.43 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 93.41 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 93.4 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 93.39 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.39 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.36 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 93.35 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 93.33 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 93.32 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 93.32 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.31 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 93.28 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 93.22 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.19 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 93.18 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.18 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 93.16 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 93.16 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.16 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.15 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 93.08 |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-99 Score=832.23 Aligned_cols=534 Identities=32% Similarity=0.531 Sum_probs=474.6
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC
Q 009256 1 MAAP--RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~--~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (539)
|++. ++.++..+++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||+|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~ 80 (715)
T PRK11730 1 MIYQGKTLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAP 80 (715)
T ss_pred CCcccceEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCC
Confidence 6654 57777436899999999995 69999999999999999999999999999999999999999999886421111
Q ss_pred --cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
....+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG 159 (715)
T PRK11730 81 EEELSQWLHFANSIF-NRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIG 159 (715)
T ss_pred HHHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcC
Confidence 1112223344556 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCCh----HHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL----SEAREVLKLAR 231 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 231 (539)
..+|++|++||++++|+||+++||||+|||++++.+++.+++++++..+..+.... ....++. ......++..+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~--~~~~~p~a~~~~~~~~~~~~~k 237 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLDWKARR--QPKLEPLKLSKIEAMMSFTTAK 237 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCcccccc--CcccccccccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998753222111 0011111 11111222232
Q ss_pred HH-HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcce
Q 009256 232 LQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (539)
Q Consensus 232 ~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~k 310 (539)
+. .++...+||++..++++++.+...+++++++.|.+.|..++.|+|++|++++|+++|..++.+.. ....++.+++
T Consensus 238 ~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi~aF~~~~~~~~~~~~--~~~~~~~i~~ 315 (715)
T PRK11730 238 GMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALVGIFLNDQYVKGKAKK--LAKDAKPVKQ 315 (715)
T ss_pred HHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC--CCCCccccce
Confidence 22 35678899999999999999999999999999999999999999999999999999999876522 1124567999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|+|||+|.||.+||..++.+|++|++||++++.++++.+++.+.+.+.+++|.+++.+.+..+++++++++++++++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (715)
T PRK11730 316 AAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGFERVDV 395 (715)
T ss_pred EEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHH
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~ 470 (539)
|||++||++++|+++|+++++++++++||+||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~ 475 (715)
T PRK11730 396 VVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIA 475 (715)
T ss_pred EEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 471 ~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
.+..|++.+||.||+++|.|||++||+++++++|++.++++|++++|||+++ .++|+|+|||+++|..+
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfv~nRi~~~~~~ea~~lv~~Ga~~e~ID~a~~~~~G~~~GP~~~~D~~G 545 (715)
T PRK11730 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRQIDKVMEKQFGWPMGPAYLLDVVG 545 (715)
T ss_pred HHHHHHHHhCCceEEecCcCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhCCCccCHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999 67999999999999864
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-98 Score=827.85 Aligned_cols=534 Identities=31% Similarity=0.512 Sum_probs=475.5
Q ss_pred CCCC--cEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC
Q 009256 1 MAAP--RVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~--~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (539)
|++. ++.++..+++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 80 (714)
T TIGR02437 1 MIYQGKTIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALP 80 (714)
T ss_pred CCcccceEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCC
Confidence 5555 5777754689999999999 579999999999999999999999999999999999999999999986421111
Q ss_pred --cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
....+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG 159 (714)
T TIGR02437 81 DAELIQWLLFANSIF-NKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIG 159 (714)
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhC
Confidence 1112223345666 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCCh--HHHHH--HHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL--SEARE--VLKLAR 231 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~ 231 (539)
..+|++|++||++++|+||+++||||+++|++++.+++.++++++....+.+.+.. ......+ ....+ .....+
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 237 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLDWKAKR--QPKLEPLKLSKIEAMMSFTTAK 237 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCcccccC--CCCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766432221111 0011110 00111 123333
Q ss_pred H-HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcce
Q 009256 232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRK 310 (539)
Q Consensus 232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~k 310 (539)
. ..+++..+|||+..+.++++++...+++++++.|.+.|.+++.|++++++++.|+.+|..++.+. ..+..++++++
T Consensus 238 ~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~~~ff~~r~~~~~~~--~~~~~~~~i~~ 315 (714)
T TIGR02437 238 GMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALIGLFLNDQYVKGKAK--KADKIAKDVKQ 315 (714)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhHhhcCCCC--CCCCCccccce
Confidence 3 45578889999999999999999999999999999999999999999999999999999887642 11235678999
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|+|||+|.||.+||..++.+|++|+++|++++.++++.+++++.+...+++|.+++.+.+..+++++++++++++++||+
T Consensus 316 v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~aDl 395 (714)
T TIGR02437 316 AAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFDNVDI 395 (714)
T ss_pred EEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHH
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVIL 470 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~ 470 (539)
|||++||++++|+++|+++++++++++|++||||++++++++..+.+|+|++|+|||+|++.+++|||++++.|++++++
T Consensus 396 ViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~ 475 (714)
T TIGR02437 396 VVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIA 475 (714)
T ss_pred EEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 471 DLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 471 ~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++..+++.+||.||+++|.|||++||++.++++|++.++++|+++++||+++ .++|||||||+++|..+
T Consensus 476 ~~~~~~~~lgk~pv~v~d~pGfi~NRl~~~~~~ea~~l~~eG~~~~~ID~a~~~~~G~p~GPf~l~D~~G 545 (714)
T TIGR02437 476 TVVAYASKMGKTPIVVNDCPGFFVNRVLFPYFGGFSKLLRDGADFVRIDKVMEKQFGWPMGPAYLLDVVG 545 (714)
T ss_pred HHHHHHHHcCCEEEEeCCcccchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhcCCCccCHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999 67999999999999764
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-98 Score=827.60 Aligned_cols=533 Identities=35% Similarity=0.550 Sum_probs=473.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEE-EEecCCCCcccCCCchhhhhhcCCC
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAI-VLTGNGGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~v-vl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (539)
|+++++.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|++ |+||.|++||+|+|++++.......
T Consensus 10 ~~~~~~~~~~-~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~ 88 (737)
T TIGR02441 10 MARTHRHYEV-KGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQ 88 (737)
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChH
Confidence 6677899998 7999999999996 5999999999999999999999999975 5699999999999999986421111
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCcccCCCCCCcchhhccccccC
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
....+....++++ .+|.++||||||+|||+|+|||++|+|+||+|||+++ ++|++||+++|++|++|++++|||++|
T Consensus 89 ~~~~~~~~~~~l~-~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMF-ERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 1222333345666 6799999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-------------chHHHHHHHHHHHHHhcCchhhhhhhcccccCCh--
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-------------EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSL-- 220 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-------------~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~-- 220 (539)
..+|++|+++|++++|+||+++||||+|||+ +++.+.+.+++++++..+....+......+....
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 247 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANGKLSINRDKGLVHKITQYVM 247 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcccCCccccccccCccchhhc
Confidence 9999999999999999999999999999987 5578888888888766442221111000000000
Q ss_pred ---HHHHHHHHHHHHH-HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 221 ---SEAREVLKLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 221 ---~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
......+..++.+ .+++..+|||+.+++++++.+...+++++++.|++.|.+++.|++++..++.|+..|..++.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~al~~~f~~~~~~~~~~ 327 (737)
T TIGR02441 248 TNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESKAFGELSMTFESKALIGLFHGQTDCKKNK 327 (737)
T ss_pred ccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCC
Confidence 1122234444444 456777899999999999999999999999999999999999999999999999999888765
Q ss_pred CCCcCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 009256 297 NVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (539)
Q Consensus 297 ~~~~~~~~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 376 (539)
+ +..++++++|+|||+|.||++||..++.+|++|+++|++++.+++..+++.+.+++.+++|.+++.+.+..++++
T Consensus 328 ~----~~~~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i 403 (737)
T TIGR02441 328 F----GKPQRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNL 403 (737)
T ss_pred C----CCCCCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCe
Confidence 3 124578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCee
Q 009256 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (539)
Q Consensus 377 ~~~~~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~v 456 (539)
+++++++++++||+|||++||+.++|+++|+++++++++++|++||||++++++++..+.+|+|++|+|||+|++.+++|
T Consensus 404 ~~~~~~~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~Lv 483 (737)
T TIGR02441 404 TPTLDYSGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLL 483 (737)
T ss_pred EEeCCHHHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccc
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGG 536 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d 536 (539)
||++++.|++++++++..+++.+||.||+++|.|||++||++.++++|++.++++|+++++||+++.++|+|+|||+++|
T Consensus 484 Evv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~NRi~~~~~~ea~~lv~eGv~~~~ID~a~~~~G~p~GP~~l~D 563 (737)
T TIGR02441 484 EIITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTTRCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPVGAATLAD 563 (737)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 009256 537 CWS 539 (539)
Q Consensus 537 ~~~ 539 (539)
.++
T Consensus 564 ~vG 566 (737)
T TIGR02441 564 EVG 566 (737)
T ss_pred Hhh
Confidence 864
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-96 Score=811.43 Aligned_cols=514 Identities=36% Similarity=0.594 Sum_probs=462.4
Q ss_pred EEEEecCcEEEEEeCCC-C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEE-ecCCCCcccCCCchhhhhhcCCCcccccc
Q 009256 7 TMEVGNDGVAIITLINP-P-VNALAIPIVAGLKDKFEEATSRDDVKAIVL-TGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 7 ~~~~~~~~v~~i~l~~p-~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl-~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
+++..+++|++|||||| + .|+||.+|+++|.+++++++.|+++|+||| +|.|++||+|+|++++...........+.
T Consensus 3 ~~~~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 82 (699)
T TIGR02440 3 TLTVREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALA 82 (699)
T ss_pred EEEEcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHH
Confidence 34443689999999999 4 699999999999999999999999999997 68899999999999985421111111222
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
...++++ .+|.++||||||+|||+|+|||++|+|+||+|||+++ ++|++||+++|++|++|++++|+|++|..+|++
T Consensus 83 ~~~~~~~-~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~ 161 (699)
T TIGR02440 83 QQGQVLF-AELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALD 161 (699)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHH
Confidence 3344566 6799999999999999999999999999999999976 799999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHH-------------HHhcCchhhhhhhcccccCChHHHHHHHH
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD-------------IAARRKPWIRSLHRTDKLGSLSEAREVLK 228 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~-------------la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (539)
|+++|++++|+||+++||||+|+|++++.+++.++|++ ++..+|.+.+ . ...
T Consensus 162 llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~------------~---~~~ 226 (699)
T TIGR02440 162 MILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA------------L---LFD 226 (699)
T ss_pred HHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHH------------H---HHH
Confidence 99999999999999999999999999999999999984 3333322211 1 111
Q ss_pred HHHH-HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCC
Q 009256 229 LARL-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRG 307 (539)
Q Consensus 229 ~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~ 307 (539)
.+.+ ..+++..+|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.++..++.|+. . ..+++
T Consensus 227 ~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~~~~~~~~~~~-~--~~~~~ 303 (699)
T TIGR02440 227 QAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFATTEMKKETGS-D--ATPAK 303 (699)
T ss_pred HHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCC-C--CCccc
Confidence 2222 345777899999999999999999999999999999999999999999999999999988876552 2 23467
Q ss_pred cceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+++|+|||+|.||.+||..++ ++|++|++||++++.++++.+++.+.+.++++++.++..+.+..++++++++++++++
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 383 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRGFK 383 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHHhc
Confidence 899999999999999999998 5899999999999999999999999999999999999999998999999999999899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+|||++||++++|+++|+++++++++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~ 463 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSE 463 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
++++++..+++.+||.||+++|.|||++||++.++++|++.++++|++++|||++++++|+|+|||+++|.++
T Consensus 464 ~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl~~~~~~Ea~~l~~~G~~~~dID~a~~~~G~p~GPf~l~D~vG 536 (699)
T TIGR02440 464 QTIATTVALAKKQGKTPIVVADKAGFYVNRILAPYMNEAARLLLEGEPVEHIDKALVKFGFPVGPITLLDEVG 536 (699)
T ss_pred HHHHHHHHHHHHcCCeEEEEccccchHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCcCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999988999999999999764
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-96 Score=809.37 Aligned_cols=529 Identities=35% Similarity=0.566 Sum_probs=464.9
Q ss_pred cEEEEEecCcEEEEEeCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCcccc
Q 009256 5 RVTMEVGNDGVAIITLINP--PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p--~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
.+.++.++++|++|||||| +.|+||.+|+++|.+++++++.|+++|+|||+|. |++||+|+|++++...........
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 4667775689999999999 4699999999999999999999999999999986 489999999998854321111112
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+|
T Consensus 86 ~~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A 164 (708)
T PRK11154 86 LARQGQQLF-AEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTA 164 (708)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHH
Confidence 223344566 6799999999999999999999999999999999987 4899999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHH-HHHHhC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL-QAKKTA 238 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (539)
++|+++|++++|+||+++||||+|+|++++.+++.++|+++....+ ....-......++... ...+..++. ..++++
T Consensus 165 ~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~-~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~ 242 (708)
T PRK11154 165 LDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARR-PLPVRERLLEGNPLGR-ALLFKQARKKTLAKTQ 242 (708)
T ss_pred HHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccC-cCCchhhhcccCchhH-HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999988421100 0000000000000000 111222333 345677
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcceEEEEcCCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL 318 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~kI~iIG~G~ 318 (539)
.+|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|+.+|..++.|+. + ..++.+++|+|||+|.
T Consensus 243 g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~~~~~~~~~~~-~--~~~~~i~~v~ViGaG~ 319 (708)
T PRK11154 243 GNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFATTEMKKDTGS-D--AKPRPVNKVGVLGGGL 319 (708)
T ss_pred cCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-C--CCCCcccEEEEECCch
Confidence 799999999999999999999999999999999999999999999999999988877552 2 2456899999999999
Q ss_pred CcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccC
Q 009256 319 MGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (539)
Q Consensus 319 mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe 397 (539)
||.+||..++ .+|++|+++|++++.++++.+++.+.++++++++.++..+....+++++++++++++++||+|||++||
T Consensus 320 mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlViEav~E 399 (708)
T PRK11154 320 MGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRGFKHADVVIEAVFE 399 (708)
T ss_pred hhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHHhccCCEEeecccc
Confidence 9999999999 889999999999999999999999999999999999999888899999999999889999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHH
Q 009256 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477 (539)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~ 477 (539)
++++|+++|+++++++++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++++.+..+++
T Consensus 400 ~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~ 479 (708)
T PRK11154 400 DLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAK 479 (708)
T ss_pred cHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 478 ~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
.+|+.|++++|.|||++||++.++++|++.++++|++++|||.++.++|||+|||+++|..+
T Consensus 480 ~~gk~pv~v~d~pGfi~nRl~~~~~~EA~~lv~eGv~~~dID~a~~~~G~p~GPf~~~D~~G 541 (708)
T PRK11154 480 KQGKTPIVVRDGAGFYVNRILAPYINEAARLLLEGEPIEHIDAALVKFGFPVGPITLLDEVG 541 (708)
T ss_pred HcCCceEEEeccCcHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988999999999999753
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=409.95 Aligned_cols=244 Identities=33% Similarity=0.529 Sum_probs=223.2
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+++|+.||||||+ +|+|+..++.+|.+++..++.|+.++++||||.|+.||+|.|++++......+-... .+.+.+
T Consensus 44 d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~---~~~~~~ 120 (290)
T KOG1680|consen 44 DNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDG---IFLRVW 120 (290)
T ss_pred CCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccc---cccchh
Confidence 7899999999996 699999999999999999999999999999999999999999999987443321111 122334
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
..+.+.+||+||+|||+|+|||+||+++||+|||+++|+|++|+.++|++|.+|||+||+|.||.++|+++++||++++
T Consensus 121 -~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~ 199 (290)
T KOG1680|consen 121 -DLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLG 199 (290)
T ss_pred -hhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCccc
Confidence 4456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 009256 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (539)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (539)
|+||+++||||+|||.++++.+|.+|+++|++.|+..++ +.|++
T Consensus 200 AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~------------------------------------~~K~s 243 (290)
T KOG1680|consen 200 AQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVR------------------------------------ADKES 243 (290)
T ss_pred HHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHHH
Confidence 999999999999999999999999999999999985443 45788
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 251 ~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
++.+.+.++.+++..|...|...+.++|.+||+.+|.+||++++.
T Consensus 244 vn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr~~~~~ 288 (290)
T KOG1680|consen 244 VNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKRKPKFS 288 (290)
T ss_pred HHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccCCcccc
Confidence 999999999999999999999999999999999999999999874
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=418.03 Aligned_cols=253 Identities=30% Similarity=0.470 Sum_probs=228.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (257)
T PRK05862 1 MAYETILVET-RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSF---M 76 (257)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccch---h
Confidence 7888899998 7899999999996 699999999999999999999999999999999999999999998754221 1
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.......+ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 155 (257)
T PRK05862 77 DVYKGDYITNW-EKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKA 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHH
Confidence 11112233455 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|+++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVM------------------------------ 205 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.|+|+++++++|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr~p~~ 254 (257)
T PRK05862 206 ------MAKEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKRKPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 4567788777788999999999999999999999999999999998875
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=419.02 Aligned_cols=253 Identities=40% Similarity=0.655 Sum_probs=226.9
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
++.++. +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||+|.|++||+|+|++++...........+..
T Consensus 3 ~i~~~~-~~~v~~itl~rp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 81 (257)
T PRK07658 3 FLSVRV-EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQ 81 (257)
T ss_pred eEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHH
Confidence 678888 7999999999998899999999999999999999999999999999999999999998854322111112223
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
....++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|++|++
T Consensus 82 ~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 160 (257)
T PRK07658 82 LGQVTF-ERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMML 160 (257)
T ss_pred HHHHHH-HHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHH
Confidence 334566 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
+|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 161 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------------- 205 (257)
T PRK07658 161 TSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTR----------------------------------- 205 (257)
T ss_pred cCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999875432
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|++.
T Consensus 206 -~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~~ 255 (257)
T PRK07658 206 -AVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKRKPSFS 255 (257)
T ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 45677777777788999999999999999999999999999999988763
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=416.43 Aligned_cols=252 Identities=31% Similarity=0.476 Sum_probs=225.7
Q ss_pred cEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcccccc
Q 009256 5 RVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
.+.++. +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++...... ....+.
T Consensus 4 ~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~-~~~~~~ 81 (258)
T PRK09076 4 ELDLEI-DGHVAILTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKA-VAREMA 81 (258)
T ss_pred EEEEEE-ECCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChh-hHHHHH
Confidence 578888 78999999999988999999999999999999999999999999998 689999999987542111 111222
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (539)
....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|++++
T Consensus 82 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ 160 (258)
T PRK09076 82 RRFGEAF-EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMI 160 (258)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2334556 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchh
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (539)
++|++++|+||+++||||+|||++++.+++.+++++++..||.+++
T Consensus 161 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------------- 206 (258)
T PRK09076 161 LCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA---------------------------------- 206 (258)
T ss_pred HcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|...+..++.++|++|++.+|++||+|++.
T Consensus 207 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 256 (258)
T PRK09076 207 --ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKRAPQWK 256 (258)
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 34677777777788999999999999999999999999999999998864
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=416.89 Aligned_cols=255 Identities=33% Similarity=0.544 Sum_probs=226.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~- 77 (539)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~ 78 (260)
T PRK05980 1 MT-DTVLIEI-RDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGA 78 (260)
T ss_pred CC-ceEEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccc
Confidence 66 4688888 7999999999995 6999999999999999999999999999999998 7999999999875422111
Q ss_pred --cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 78 --DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 78 --~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
....+.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (260)
T PRK05980 79 DVALRDFVRRGQAMT-ARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAG 157 (260)
T ss_pred hhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcC
Confidence 1112222233455 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 211 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVA-------------------------- 211 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999875443
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|++
T Consensus 212 ----------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 260 (260)
T PRK05980 212 ----------AILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERRRPAY 260 (260)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccCCCCC
Confidence 3467777777778899999999999999999999999999999998763
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=416.21 Aligned_cols=255 Identities=25% Similarity=0.380 Sum_probs=227.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC--
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (539)
|+|+.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++ |+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 78 (262)
T PRK08140 1 MMYETILLAI-EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMP 78 (262)
T ss_pred CCCceEEEEe-ECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccch
Confidence 8888899999 7999999999996 69999999999999999999 99999999999999999999999875321111
Q ss_pred cc-cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 78 DV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 78 ~~-~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
.. ..+......++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~ 157 (262)
T PRK08140 79 DLGESIETFYNPLV-RRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGM 157 (262)
T ss_pred hhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCH
Confidence 00 01112223355 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~--------------------------- 210 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLA--------------------------- 210 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999875432
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|+++++.+|++||+|++
T Consensus 211 ---------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK08140 211 ---------LIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKRAPRF 259 (262)
T ss_pred ---------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4567777777788899999999999999999999999999999998875
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=419.61 Aligned_cols=256 Identities=28% Similarity=0.418 Sum_probs=226.4
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC--
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-- 76 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-- 76 (539)
|+ ++.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 2 ~~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06142 2 MTTYESFTVEL-ADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80 (272)
T ss_pred CCCcceEEEEe-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhccccc
Confidence 55 57899998 8999999999995 6999999999999999999999999999999999999999999988542110
Q ss_pred -----Ccccc---cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh
Q 009256 77 -----GDVSL---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (539)
Q Consensus 77 -----~~~~~---~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 148 (539)
..... +.....+++ +.+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 159 (272)
T PRK06142 81 KDGLARPRTDLRREILRLQAAI-NAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQ 159 (272)
T ss_pred ccccccchHHHHHHHHHHHHHH-HHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHH
Confidence 00011 112234555 668999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHH
Q 009256 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVL 227 (539)
Q Consensus 149 ~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (539)
+|++++|..+|++|+++|++++|+||+++||||+|||+ +++++++.+++++|++.||.+++
T Consensus 160 ~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~------------------ 221 (272)
T PRK06142 160 RLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVR------------------ 221 (272)
T ss_pred HHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHH------------------
Confidence 99999999999999999999999999999999999986 88999999999999999886543
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 228 KLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 228 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.|+|++|++.+|++||+|++
T Consensus 222 ------------------~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr~p~~ 270 (272)
T PRK06142 222 ------------------GTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKRPPEF 270 (272)
T ss_pred ------------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 3466777777778899999999999999999999999999999998875
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-53 Score=413.14 Aligned_cols=252 Identities=29% Similarity=0.434 Sum_probs=224.4
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+.|.+++ +++|++||||||+ .|+||.+|+++|.++++.++ +++|+|||||.|++||+|+|++++...... .....
T Consensus 2 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~-~~~~~ 77 (255)
T PRK08150 2 SLVSYEL-DGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAG-EGMHH 77 (255)
T ss_pred ceEEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccch-hHHHH
Confidence 4688888 7899999999995 69999999999999999997 789999999999999999999998643211 11112
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
.....+++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+|+++
T Consensus 78 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l 156 (255)
T PRK08150 78 SRRWHRVF-DKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDM 156 (255)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 23344566 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 203 (255)
T PRK08150 157 MLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF--------------------------------- 203 (255)
T ss_pred HHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999875443
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++.+|++||+|+..|
T Consensus 204 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~~~ 254 (255)
T PRK08150 204 ---AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKKAAKVKP 254 (255)
T ss_pred ---HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCCC
Confidence 346777777777889999999999999999999999999999999988643
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-53 Score=414.90 Aligned_cols=255 Identities=33% Similarity=0.546 Sum_probs=230.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.| ++||+|+|++++.+... ..
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK05809 1 MELKNVILEK-EGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNE-EE 78 (260)
T ss_pred CCcceEEEEE-eCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccCh-HH
Confidence 8999999999 7899999999996 6999999999999999999999999999999999 99999999998864321 11
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+.....+++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK05809 79 GRKFGLLGNKVF-RKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGK 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 111222334566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 208 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVK----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.++|+++++.+|++||+|++
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 257 (260)
T PRK05809 209 -------LCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKREKNF 257 (260)
T ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 4567788777888999999999999999999999999999999998875
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-53 Score=412.24 Aligned_cols=252 Identities=25% Similarity=0.407 Sum_probs=224.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+..+++++..+++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 3 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 81 (256)
T PRK06143 3 MLNAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQ-AS 81 (256)
T ss_pred cccccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcCh-hh
Confidence 666788888657899999999995 6999999999999999999999999999999998 69999999998754321 11
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+.....+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|++++|++++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 82 AEAFISRLRDLC-DAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 112223344566 6799999999999999999999999999999999999999999999998 88888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 210 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR----------------------------- 210 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999876543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....+++++++.|...+..++.++|+++++.+|++||+
T Consensus 211 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~ 256 (256)
T PRK06143 211 -------QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRKR 256 (256)
T ss_pred -------HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhcC
Confidence 3467777777788999999999999999999999999999999985
|
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-53 Score=414.42 Aligned_cols=255 Identities=23% Similarity=0.338 Sum_probs=225.7
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
..+.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 9 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 87 (266)
T PRK08139 9 EAPLLLRED-RDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFR 87 (266)
T ss_pred cCCceEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHH
Confidence 356788998 8999999999996 59999999999999999999999999999999999999999999875422111111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +++|+|++|..+|+
T Consensus 88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~ 165 (266)
T PRK08139 88 ALFARCSRVM-QAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAM 165 (266)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHH
Confidence 1222234556 679999999999999999999999999999999999999999999999999765 56899999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
+++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 166 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 214 (266)
T PRK08139 166 EMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVR------------------------------- 214 (266)
T ss_pred HHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999876543
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|...+..++.++|+++++++|++||+|++.
T Consensus 215 -----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 264 (266)
T PRK08139 215 -----IGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKRPPEWR 264 (266)
T ss_pred -----HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 45677888778888999999999999999999999999999999988863
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=410.98 Aligned_cols=250 Identities=31% Similarity=0.454 Sum_probs=225.3
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccc
Q 009256 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ...+.
T Consensus 3 ~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~---~~~~~ 78 (255)
T PRK09674 3 ELLVSR-QQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDL---AATLN 78 (255)
T ss_pred eEEEEe-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccch---hhhHH
Confidence 477888 7899999999996 699999999999999999999999999999999999999999998754211 11122
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (539)
.....++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|+.+|++++
T Consensus 79 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ 157 (255)
T PRK09674 79 DPRPQLW-QRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMV 157 (255)
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2234556 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchh
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (539)
++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~---------------------------------- 203 (255)
T PRK09674 158 LTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALR---------------------------------- 203 (255)
T ss_pred HcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999875443
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|...+..++.++|+++++.+|++||+|++.
T Consensus 204 --~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr~p~~~ 253 (255)
T PRK09674 204 --AAKQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKRTPDFK 253 (255)
T ss_pred --HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 44677777777889999999999999999999999999999999988763
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=412.10 Aligned_cols=256 Identities=26% Similarity=0.362 Sum_probs=225.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+|+++.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (262)
T PRK05995 1 MMYETLEIEQ-RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDD 79 (262)
T ss_pred CCCceEEEEe-eCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCch
Confidence 8899999999 7999999999996 6999999999999999999999999999999999999999999987542111101
Q ss_pred ccc--chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 80 SLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 80 ~~~--~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
... .....+++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~ 157 (262)
T PRK05995 80 ENRADARRLADML-RAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGER 157 (262)
T ss_pred hhhhHHHHHHHHH-HHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHH
Confidence 111 12234556 67999999999999999999999999999999999999999999999999988765 589999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVR---------------------------- 209 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999875443
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~-l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++. ++.|...+..++.++|+++++.+|++||+|++.
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 260 (262)
T PRK05995 210 --------AGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKRKPAWR 260 (262)
T ss_pred --------HHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 34667777667778888 888999999999999999999999999998753
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=411.28 Aligned_cols=251 Identities=24% Similarity=0.344 Sum_probs=221.3
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
|.++. +++|++||||||+ .|++|.+|+++|.++++++++|+++|+|||||.|++||+|+|++++....... ...+..
T Consensus 1 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 78 (255)
T PRK06563 1 VSRER-RGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG-GFPFPE 78 (255)
T ss_pred CeEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc-hhhhhh
Confidence 45677 7899999999996 69999999999999999999999999999999999999999999885422111 111111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
...+.+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+++++
T Consensus 79 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 158 (255)
T PRK06563 79 GGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLL 158 (255)
T ss_pred hhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHH
Confidence 12233323588999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
||++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 159 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 203 (255)
T PRK06563 159 TGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQ----------------------------------- 203 (255)
T ss_pred cCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++.+|++||+|++
T Consensus 204 -~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 252 (255)
T PRK06563 204 -ATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERRPARF 252 (255)
T ss_pred -HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 3466777777778899999999999999999999999999999998875
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=413.59 Aligned_cols=255 Identities=27% Similarity=0.356 Sum_probs=225.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCH-HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAI-PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~-~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (539)
|| +.+.+++ +++|++||||||+ .|++|. +|+++|.+++++++.|+++|+|||+|.|++||+|+|++++.+.....
T Consensus 1 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (266)
T PRK09245 1 MT-DFLLVER-DGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFG 78 (266)
T ss_pred CC-CceEEEE-ECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 66 5688998 7899999999996 699995 99999999999999999999999999999999999999985422110
Q ss_pred -cc----cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhcccc
Q 009256 78 -DV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (539)
Q Consensus 78 -~~----~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 152 (539)
.. ..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~ 157 (266)
T PRK09245 79 GSPADIRQGYRHGIQRIP-LALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPR 157 (266)
T ss_pred ccchhHHHHHHHHHHHHH-HHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHH
Confidence 00 01111223455 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHH
Q 009256 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (539)
Q Consensus 153 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (539)
++|..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 158 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------- 214 (266)
T PRK09245 158 IIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALR----------------------- 214 (266)
T ss_pred HhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999999986543
Q ss_pred HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.++|++|++.+|++||+|.+
T Consensus 215 -------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 263 (266)
T PRK09245 215 -------------LTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKRPPVF 263 (266)
T ss_pred -------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCCCCCC
Confidence 3467777777778889999999999999999999999999999998875
|
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-52 Score=413.07 Aligned_cols=256 Identities=24% Similarity=0.330 Sum_probs=227.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCC-CceEEEEecCCCCcccCCCchhhhhhcCCC-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRD-DVKAIVLTGNGGRFSGGFDINVFQKVHGAG- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~-~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 77 (539)
|+|+.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ ++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T PRK05981 1 MQFKKVTLDF-DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESD 79 (266)
T ss_pred CCcceEEEEe-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccc
Confidence 8999999999 7999999999996 69999999999999999999876 499999999999999999999875422111
Q ss_pred ---c-ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccc
Q 009256 78 ---D-VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (539)
Q Consensus 78 ---~-~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ 153 (539)
. ...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~ 158 (266)
T PRK05981 80 SGGDAGAALETAYHPFL-RRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRL 158 (266)
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHH
Confidence 0 011222234556 67999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHH
Q 009256 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (539)
Q Consensus 154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (539)
+|+.+|++++++|++++|+||+++||||+|+|++++++++.++++++++.||.+++
T Consensus 159 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------ 214 (266)
T PRK05981 159 VGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALG------------------------ 214 (266)
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998875443
Q ss_pred HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++.+.++.|...+..++.|+|++|++.+|++||+|++
T Consensus 215 ------------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~ 263 (266)
T PRK05981 215 ------------LIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKRPAQF 263 (266)
T ss_pred ------------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 3466777777778899999999999999999999999999999999875
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=410.36 Aligned_cols=257 Identities=20% Similarity=0.268 Sum_probs=222.2
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+ |+++.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 1 ~~~~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~ 80 (265)
T PRK05674 1 MSDFQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80 (265)
T ss_pred CCCcceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccc
Confidence 44 8899999844789999999995 699999999999999999999999999999999999999999998754211110
Q ss_pred ccc--cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 79 VSL--MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 79 ~~~--~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
... ......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|.
T Consensus 81 ~~~~~~~~~~~~~~-~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~ 158 (265)
T PRK05674 81 NTNLDDARELAELM-YNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGE 158 (265)
T ss_pred hhhhHHHHHHHHHH-HHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCH
Confidence 011 112234556 67899999999999999999999999999999999999999999999999988765 48999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|+++++||++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 211 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALR--------------------------- 211 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999986543
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHH-HHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLK-EAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++++.. +...+..++.|+|+++++.+|++||+|++.
T Consensus 212 ---------~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr~p~~~ 262 (265)
T PRK05674 212 ---------ASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKRTPAWQ 262 (265)
T ss_pred ---------HHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCCCCCC
Confidence 34677777777778887765 456788899999999999999999998864
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=410.06 Aligned_cols=253 Identities=32% Similarity=0.472 Sum_probs=225.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-Ccc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~ 79 (539)
|+|+.+.++. +++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...... ...
T Consensus 1 ~~~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 79 (257)
T PRK06495 1 MMMSQLKLEV-SDHVAVVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDL 79 (257)
T ss_pred CCcceEEEEe-eCCEEEEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhH
Confidence 8889999999 79999999999988999999999999999999999999999999999999999999987543111 111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++++|++++|..+|
T Consensus 80 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 80 RAHNRRTRECF-HAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 11222234556 67999999999999999999999999999999999999999999999996 456789999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~------------------------------ 205 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATR------------------------------ 205 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++.+|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr~p~~ 254 (257)
T PRK06495 206 ------LAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKRPPVF 254 (257)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccCCCCC
Confidence 3466777777778899999999999999999999999999999999885
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=408.57 Aligned_cols=254 Identities=28% Similarity=0.466 Sum_probs=224.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
.+.+.++..+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.+.....
T Consensus 8 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~---- 83 (265)
T PLN02888 8 ENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---- 83 (265)
T ss_pred CCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccch----
Confidence 3567777536899999999996 69999999999999999999999999999999999999999999875422111
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
......+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 84 ~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (265)
T PLN02888 84 VKDVETDPV-AQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRARE 162 (265)
T ss_pred hhHHHHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHH
Confidence 111223455 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
++++|++++|+||+++||||+|||++++.+++.++++++++.+|.+++
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (265)
T PLN02888 163 VSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVL-------------------------------- 210 (265)
T ss_pred HHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999886543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh--CCHHHHhHHHHHHhhhhccCCCC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV--MLDTSRGLVHVFFAQRATSKVPN 297 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~--~s~~~~~~~~af~~kr~~~~~~~ 297 (539)
.+|+.++.....+++++++.|...+..++ .++|++|++++|++||+|+|.|+
T Consensus 211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr~~~~~~~ 264 (265)
T PLN02888 211 ----RYKSVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGRSSKKPSK 264 (265)
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCCC
Confidence 44677777777788999999998888875 59999999999999999998663
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-52 Score=408.93 Aligned_cols=252 Identities=31% Similarity=0.436 Sum_probs=223.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06494 1 MALPFSTVER-KGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRG- 78 (259)
T ss_pred CCCceeEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcch-
Confidence 8889999998 7899999999996 5999999999999999999999999999999998 7999999999875422111
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
........+. . +.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+
T Consensus 79 --~~~~~~~~~~-~-~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 --WPESGFGGLT-S-RFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred --hhhHHHHHHH-H-HhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0111222333 3 56899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 205 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIR----------------------------- 205 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHH--HHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKE--AKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e--~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.+++....+++++++.| ...+..++.++|++|++.+|++||+|++
T Consensus 206 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr~p~~ 256 (259)
T PRK06494 206 -------ASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKRPPRW 256 (259)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 346777777777889999998 5578899999999999999999998875
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-52 Score=409.15 Aligned_cols=257 Identities=23% Similarity=0.313 Sum_probs=222.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+|+.+.+++++++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~ 80 (262)
T PRK07468 1 MMFETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRA 80 (262)
T ss_pred CCcceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchh
Confidence 677888898833689999999996 6999999999999999999999999999999999999999999987542111111
Q ss_pred c--ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 80 S--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 80 ~--~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
. ........++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++ +++|..
T Consensus 81 ~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~ 158 (262)
T PRK07468 81 TRIEEARRLAMML-KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEA 158 (262)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHH
Confidence 1 1112234455 67999999999999999999999999999999999999999999999999999998855 559999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++|+++|++++|+||+++||||+|+|++++.+.+.++++++++.||.+++
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~---------------------------- 210 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVA---------------------------- 210 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999876543
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++......+++.++.|...+..++.|+|++|++.+|++||+|++.
T Consensus 211 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr~~~~~ 260 (262)
T PRK07468 211 --------AAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKRAPAWR 260 (262)
T ss_pred --------HHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 34566666555566888999999999999999999999999999998763
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=409.93 Aligned_cols=255 Identities=30% Similarity=0.492 Sum_probs=227.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+ +++.+++.+++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 1 ~~-~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~ 78 (260)
T PRK07657 1 ML-QNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNE-EQ 78 (260)
T ss_pred CC-ceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCCh-hh
Confidence 67 578888646899999999996 6999999999999999999999999999999999 59999999998754211 11
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 79 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~ 157 (260)
T PRK07657 79 VRHAVSLIRTTM-EMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGR 157 (260)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHH
Confidence 112222334556 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~----------------------------- 208 (260)
T PRK07657 158 AKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR----------------------------- 208 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++++|++||+|++
T Consensus 209 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r~~~~ 257 (260)
T PRK07657 209 -------QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKRKPMY 257 (260)
T ss_pred -------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4467777777778899999999999999999999999999999998875
|
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-52 Score=408.79 Aligned_cols=253 Identities=24% Similarity=0.343 Sum_probs=222.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.+.+++ +++|++||||||+.|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-- 76 (261)
T PRK03580 1 MS-ESLHTTR-NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-- 76 (261)
T ss_pred CC-ceEEEEE-ECCEEEEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch--
Confidence 66 3588888 78999999999988999999999999999999999999999999998 7999999999875422111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.......+ .++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 77 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a 155 (261)
T PRK03580 77 ADFGPGGFAGL-TEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIA 155 (261)
T ss_pred hhhhhhhhHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11111122345 66899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIA------------------------------ 205 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHH----HHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK----VFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~----~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.. .+..++.++|+++++++|++||+|++
T Consensus 206 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr~~~~ 258 (261)
T PRK03580 206 ------ALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKRDPVW 258 (261)
T ss_pred ------HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCCCCCC
Confidence 34667777777778888888863 78889999999999999999998875
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=408.68 Aligned_cols=250 Identities=26% Similarity=0.383 Sum_probs=221.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-Ccc-ccc
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDV-SLM 82 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~-~~~ 82 (539)
+.+++ +++|++||||||+ .|++|.+|+.+|.++++.+++|+ +|+|||||.|++||+|+|++++...... ... ..+
T Consensus 1 ~~~e~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSAL-EAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTI 78 (256)
T ss_pred CeEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHH
Confidence 35677 7899999999995 69999999999999999999998 9999999999999999999987642111 000 111
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
......++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|
T Consensus 79 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l 157 (256)
T TIGR02280 79 ETFYNPLV-RRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGL 157 (256)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 11223445 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
+++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 158 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~--------------------------------- 204 (256)
T TIGR02280 158 AMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLA--------------------------------- 204 (256)
T ss_pred HHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999875443
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|++
T Consensus 205 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 253 (256)
T TIGR02280 205 ---LTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKRNPQF 253 (256)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCCCCCC
Confidence 4567787777778899999999999999999999999999999999885
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=409.09 Aligned_cols=253 Identities=25% Similarity=0.352 Sum_probs=223.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.+.++. +++|++||||||+ +|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus 4 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 4 GPHALVEQ-RGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 46788888 7899999999996 699999999999999999999999999999999999999999999865321111110
Q ss_pred --c-chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 82 --M-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 82 --~-~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
+ ......++ .+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus 83 ~~~~~~~~~~~~--~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 160 (263)
T PRK07799 83 GSYDPSRIDALL--KGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTV 160 (263)
T ss_pred hhhhhhHHHHHH--HHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHH
Confidence 1 01111222 378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~----------------------------- 211 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQ----------------------------- 211 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++
T Consensus 212 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r~p~~ 260 (263)
T PRK07799 212 -------AILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKRAPNF 260 (263)
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccCCCCC
Confidence 4467777777778899999999999999999999999999999998875
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=407.01 Aligned_cols=245 Identities=30% Similarity=0.475 Sum_probs=220.0
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
+++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+......+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~ 80 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQKFVNSLRST 80 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccCh-HHHHHHHHHHHHH
Confidence 5789999999996 699999999999999999999999999999998 589999999998754221 1111222333455
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~ 169 (539)
+ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++||+++
T Consensus 81 ~-~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 81 F-SSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRI 159 (251)
T ss_pred H-HHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCcc
Confidence 5 678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHH
Q 009256 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249 (539)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 249 (539)
+|+||+++||||+|||++++.+++.+++++|++.||.+++ .+|+
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~------------------------------------~~K~ 203 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK------------------------------------MAKK 203 (251)
T ss_pred CHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------------HHHH
Confidence 9999999999999999999999999999999999986543 4567
Q ss_pred HHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 250 VIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 250 ~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.++.....++++.++.|...+..++.++|++|++++|++||+|++
T Consensus 204 ~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 248 (251)
T PLN02600 204 AINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKRKPVY 248 (251)
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCC
Confidence 787777788999999999999999999999999999999999875
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-52 Score=407.56 Aligned_cols=251 Identities=32% Similarity=0.469 Sum_probs=225.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+++.++.++++|++||||||+ .|++|.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++..... ...+
T Consensus 7 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~---~~~~ 83 (261)
T PRK08138 7 DVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGA---IEMY 83 (261)
T ss_pred CCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccch---hHHH
Confidence 567888756889999999996 699999999999999999999999999999999999999999998764211 1112
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
.....+++ +.+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 162 (261)
T PRK08138 84 LRHTERYW-EAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRM 162 (261)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHH
Confidence 22334566 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
+++|++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------------- 209 (261)
T PRK08138 163 ALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALA--------------------------------- 209 (261)
T ss_pred HHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999988865432
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++
T Consensus 210 ---~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr~~~~ 258 (261)
T PRK08138 210 ---QIKEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKRKPAY 258 (261)
T ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCC
Confidence 4567777777788899999999999999999999999999999998875
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-52 Score=411.18 Aligned_cols=256 Identities=27% Similarity=0.372 Sum_probs=226.9
Q ss_pred CCCCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+|+.+.+++ ++ +|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 2 ~~~~~i~~~~-~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~ 80 (272)
T PRK06210 2 MAYDAVLYEV-ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDG 80 (272)
T ss_pred CCcceEEEEE-CCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccc
Confidence 8899999999 77 99999999995 699999999999999999999999999999999999999999998765321110
Q ss_pred c-----cccch----HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhc
Q 009256 79 V-----SLMPD----VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQR 149 (539)
Q Consensus 79 ~-----~~~~~----~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 149 (539)
. ..+.. ..++++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~ 159 (272)
T PRK06210 81 RRDTDVRPFVGNRRPDYQTRY-HFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWI 159 (272)
T ss_pred cccccchhhhhhhhhhHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhh
Confidence 0 00100 123345 5689999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhcccccCChHHHHHHHH
Q 009256 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLK 228 (539)
Q Consensus 150 l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (539)
|+|++|+.+|++|++||++++|+||+++||||+|+|++++.+++.++++++++. ||.++.
T Consensus 160 l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~------------------- 220 (272)
T PRK06210 160 LPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMA------------------- 220 (272)
T ss_pred hHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHH-------------------
Confidence 999999999999999999999999999999999999999999999999999985 765432
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++.+|++||+|.+
T Consensus 221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 269 (272)
T PRK06210 221 -----------------VIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKRPPRF 269 (272)
T ss_pred -----------------HHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 4467777777778899999999999999999999999999999998875
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=406.25 Aligned_cols=250 Identities=28% Similarity=0.413 Sum_probs=221.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~--- 75 (254)
T PRK08252 1 MS-DEVLVER-RGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERP--- 75 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccch---
Confidence 55 5688898 7999999999996 6999999999999999999999999999999999999999999988642111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.........++ ...+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 76 ~~~~~~~~~~~---~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 76 SIPGRGFGGLT---ERPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred hhhHHHHHHHH---HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 11111111222 247999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 202 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVA------------------------------ 202 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus 203 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~ 251 (254)
T PRK08252 203 ------ASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKRAPVW 251 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCC
Confidence 3466777777778899999999999999999999999999999998875
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=409.89 Aligned_cols=255 Identities=25% Similarity=0.405 Sum_probs=226.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC-cc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-DV 79 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~-~~ 79 (539)
.+.|.+++ +++|++|+||||+ .|++|.+|+++|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 10 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~ 88 (269)
T PRK06127 10 TGKLLAEK-TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAV 88 (269)
T ss_pred CCceEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHH
Confidence 35688888 7899999999996 6999999999999999999999999999999998 7999999999875421111 11
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+......++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 89 ~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 89 AAYEQAVEAAQ-AALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 12223334455 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|||++++.+++.+++++++..||.+++
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 217 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLR------------------------------ 217 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999998875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++..++.|...+..++.++|++|++.+|++||+|++.
T Consensus 218 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~~ 267 (269)
T PRK06127 218 ------AAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKRKPVFK 267 (269)
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCCC
Confidence 34667777777788999999999999999999999999999999998763
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-52 Score=411.40 Aligned_cols=253 Identities=30% Similarity=0.425 Sum_probs=224.9
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-C--ccc
Q 009256 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-G--DVS 80 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~--~~~ 80 (539)
.+.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... . ...
T Consensus 18 ~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 18 HFLWEV-DDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred ceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 678888 7999999999995 6999999999999999999999999999999999999999999987432111 1 111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCC-CcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~vG~~~a 159 (539)
.+.....+++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|..+|
T Consensus 97 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a 175 (277)
T PRK08258 97 AFTRMTGDLV-KAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRA 175 (277)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHH
Confidence 1222234556 679999999999999999999999999999999999999999999999995 78899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 176 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 225 (277)
T PRK08258 176 SELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHG------------------------------ 225 (277)
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|...+..++.++|++|++++|++||+|++.
T Consensus 226 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 275 (277)
T PRK08258 226 ------MTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKRKPVFE 275 (277)
T ss_pred ------HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCCCCCCC
Confidence 44677777777889999999999999999999999999999999998863
|
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=409.73 Aligned_cols=250 Identities=23% Similarity=0.326 Sum_probs=219.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC-c--c
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-D--V 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~--~ 79 (539)
+++.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++....... . .
T Consensus 8 ~~i~~~~-~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 86 (275)
T PRK09120 8 DTVKVEV-EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQ 86 (275)
T ss_pred ccEEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHH
Confidence 5688998 7899999999996 69999999999999999999999999999999999999999999875321111 0 1
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+......++ .+|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 87 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 165 (275)
T PRK09120 87 ERIRREAYGWW-RRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA 165 (275)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence 11112233455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------ 215 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLR------------------------------ 215 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHH--HHHHHhCCH-HHHhHHHHHHhhhh
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAK--VFKELVMLD-TSRGLVHVFFAQRA 291 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~--~~~~~~~s~-~~~~~~~af~~kr~ 291 (539)
.+|+.++.....++++.++.|.. .+..++.++ |++|++++|++||.
T Consensus 216 ------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr~ 264 (275)
T PRK09120 216 ------AAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDKS 264 (275)
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhccc
Confidence 44677777777788888888764 455678998 89999999999988
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=406.63 Aligned_cols=255 Identities=24% Similarity=0.309 Sum_probs=227.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC--C
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--G 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--~ 77 (539)
|| +.+.+++ +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||+|.|++||+|+|++++...... .
T Consensus 1 ~~-~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~ 78 (260)
T PRK07511 1 MS-AELLSRR-EGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPS 78 (260)
T ss_pred CC-CeeEEEe-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccch
Confidence 77 4578888 7999999999996 6999999999999999999999999999999999999999999988642111 1
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
....+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~~~~~~~~~~~~~-~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 157 (260)
T PRK07511 79 VQAASIDGLHDWI-RAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQ 157 (260)
T ss_pred hHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHH
Confidence 1112223344566 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
++++|+++|++++|+||+++||||+|||++++.+++.++++++++.||.+++
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~---------------------------- 209 (260)
T PRK07511 158 LATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALA---------------------------- 209 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999998875432
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|+++++++|++||+|++
T Consensus 210 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r~~~~ 258 (260)
T PRK07511 210 --------RIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKRAPDY 258 (260)
T ss_pred --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccCCCCC
Confidence 4467777777778899999999999999999999999999999998875
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-52 Score=411.07 Aligned_cols=255 Identities=24% Similarity=0.386 Sum_probs=222.5
Q ss_pred CCCcEE---EEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-
Q 009256 2 AAPRVT---MEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA- 76 (539)
Q Consensus 2 ~~~~v~---~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~- 76 (539)
+|..++ .+. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 3 ~~~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~ 81 (275)
T PLN02664 3 SYKTLEIIQKSP-NSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQS 81 (275)
T ss_pred CccceEEEEecC-CCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhccccc
Confidence 355544 333 6899999999996 6999999999999999999999999999999999999999999988542110
Q ss_pred ---C--c----ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchh
Q 009256 77 ---G--D----VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT 147 (539)
Q Consensus 77 ---~--~----~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~ 147 (539)
. . ...+.....+++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~ 160 (275)
T PLN02664 82 SSGDRGRSGERLRRKIKFLQDAI-TAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTL 160 (275)
T ss_pred ccccchhhHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHH
Confidence 0 0 001112233455 67899999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHH
Q 009256 148 QRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (539)
Q Consensus 148 ~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (539)
++|++++|..+|+++++||++++|+||+++||||+|||+ +++.+.+.+++++|++.||.+++
T Consensus 161 ~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~----------------- 223 (275)
T PLN02664 161 QRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVT----------------- 223 (275)
T ss_pred HHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHH-----------------
Confidence 999999999999999999999999999999999999985 88999999999999999986543
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.++|++|++++|++||+|.+
T Consensus 224 -------------------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p~~ 272 (275)
T PLN02664 224 -------------------GTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKRKPVF 272 (275)
T ss_pred -------------------HHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCC
Confidence 3467777777778899999999999999999999999999999999885
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-52 Score=404.04 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=216.0
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchH
Q 009256 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
+..+..+++|++||||||+.|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...............
T Consensus 3 ~~~~~~~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (249)
T PRK07938 3 ITSTTPEPGIAEVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRG 82 (249)
T ss_pred eeecccCCCEEEEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 44444378999999999988999999999999999999999999999999999999999999987542111111111122
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHc
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (539)
..+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |++++|++++|..+|++++++
T Consensus 83 ~~~~~-~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~lt 158 (249)
T PRK07938 83 CFAAF-RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFT 158 (249)
T ss_pred HHHHH-HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHh
Confidence 34556 67999999999999999999999999999999999999999999999986 456789999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHH
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (539)
|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 159 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------------ 202 (249)
T PRK07938 159 AATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIR------------------------------------ 202 (249)
T ss_pred CCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhc
Q 009256 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~ 292 (539)
.+|+.++.....++++.++.|...+..++.++|++|++++|++||+|
T Consensus 203 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr~p 249 (249)
T PRK07938 203 AAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKRKA 249 (249)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcCCC
Confidence 44677777777788899999999999999999999999999999975
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=405.11 Aligned_cols=253 Identities=25% Similarity=0.357 Sum_probs=215.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
+.+.+++++++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++...........
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGV 81 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhH
Confidence 457777635889999999996 6999999999999999999999999999999999 79999999998743211110000
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
......+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++
T Consensus 82 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~ 160 (259)
T TIGR01929 82 HRLNVLDVQ-RQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKARE 160 (259)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHH
Confidence 011123455 6789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 161 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 208 (259)
T TIGR01929 161 IWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIR-------------------------------- 208 (259)
T ss_pred HHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999986543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++..... .......|...+..++.++|++|++++|++||+|++
T Consensus 209 ----~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~ 256 (259)
T TIGR01929 209 ----MLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKRQPDF 256 (259)
T ss_pred ----HHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCC
Confidence 234555554332 344556677889999999999999999999999875
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=402.72 Aligned_cols=251 Identities=27% Similarity=0.338 Sum_probs=214.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
|+++.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++..... . ..
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~-~-~~ 77 (256)
T TIGR03210 1 YEDILYEK-RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYD-G-RG 77 (256)
T ss_pred CCceEEEe-eCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcccc-c-hh
Confidence 46788898 7999999999996 6999999999999999999999999999999998 69999999998743211 1 11
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++++++|++++|..+|+
T Consensus 78 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~ 156 (256)
T TIGR03210 78 TIGLPMEELH-SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAR 156 (256)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHH
Confidence 1222234556 679999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
+++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~------------------------------- 205 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIA------------------------------- 205 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999986543
Q ss_pred chhHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l-~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++...... ..+ ..|...+..++.++|++|++.+|++||+|++.
T Consensus 206 -----~~K~~l~~~~~~~--~~~~~~~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 254 (256)
T TIGR03210 206 -----IAKRSFNMDTAHQ--RGIAGMGMYALKLYYDTAESREGVKAFQEKRKPEFR 254 (256)
T ss_pred -----HHHHHHHHhhccc--chHHHHHHHHHHHHccChhHHHHHHHHhccCCCCCC
Confidence 2345555443321 112 23557788899999999999999999998763
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=404.89 Aligned_cols=251 Identities=23% Similarity=0.285 Sum_probs=223.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+++.++. +++|++||||||+ .|++|.+|+.+|.++++.+ .|+++|+|||||.|++||+|+|++++...........+
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07659 6 ESVVVKY-EGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGV 83 (260)
T ss_pred ceEEEEe-eCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHH
Confidence 4588888 7999999999996 6999999999999999999 58899999999999999999999998643211111222
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
.....+++ .++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|++|
T Consensus 84 ~~~~~~~~-~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l 162 (260)
T PRK07659 84 MNTISEIV-VTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQI 162 (260)
T ss_pred HHHHHHHH-HHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHH
Confidence 33344556 67899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
+++|++++|+||+++||||+|| ++++.+++.++++++++.|+.+++
T Consensus 163 ~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~--------------------------------- 208 (260)
T PRK07659 163 IWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMI--------------------------------- 208 (260)
T ss_pred HHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 9999999999999999999999 789999999999999999875433
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.++|++|++.+|++||+|++
T Consensus 209 ---~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr~p~~ 257 (260)
T PRK07659 209 ---ETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKRLPVF 257 (260)
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCCCCCC
Confidence 4467777777788999999999999999999999999999999999875
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=403.41 Aligned_cols=254 Identities=31% Similarity=0.447 Sum_probs=227.8
Q ss_pred CCC-CcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MAA-PRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~-~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+. +.+.++. +++|++|+|||| +.|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 1 ~~~~~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~- 78 (259)
T PRK06688 1 MTMVTDLLVEL-EDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKP- 78 (259)
T ss_pred CCCCCceEEEE-ECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcch-
Confidence 542 4688888 789999999999 579999999999999999999999999999999999999999999986532211
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
..+.....+++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+
T Consensus 79 -~~~~~~~~~~~-~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~ 156 (259)
T PRK06688 79 -PDELAPVNRFL-RAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRAR 156 (259)
T ss_pred -HHHHHHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHH
Confidence 12333445666 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 157 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~----------------------------- 207 (259)
T PRK06688 157 AAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALR----------------------------- 207 (259)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999998875432
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.++|+++++++|++||+|++
T Consensus 208 -------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~~p~~ 256 (259)
T PRK06688 208 -------YTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKRKPDF 256 (259)
T ss_pred -------HHHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 3466777777778999999999999999999999999999999998875
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=403.02 Aligned_cols=253 Identities=21% Similarity=0.296 Sum_probs=222.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--CCCcccCCCchhhhhhcCCC
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (539)
||++.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+ +|+|||||. |++||+|+|++++......
T Consensus 1 ~~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~- 77 (261)
T PRK11423 1 MSMQYVNVVT-INKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRD- 77 (261)
T ss_pred CCccceEEEe-ECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcccc-
Confidence 8999999999 7999999999996 69999999999999999999887 999999986 3899999999987532111
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
...+.....+++ +.+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|+.
T Consensus 78 -~~~~~~~~~~l~-~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~ 155 (261)
T PRK11423 78 -PLSYDDPLRQIL-RMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFH 155 (261)
T ss_pred -HHHHHHHHHHHH-HHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHH
Confidence 112223344566 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++++++|++++|+||+++||||+|||++++++.+.++++++++.||.+++
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~---------------------------- 207 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999876543
Q ss_pred CCCchhHHHHHHHHHHhhc-CCc-hhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 238 APNMPQHQACLDVIEEGIV-HGG-YSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~-~~~-~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.... .++ +..++.|...+..++.|+|+++++.+|++||+|++
T Consensus 208 --------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr~p~~ 258 (261)
T PRK11423 208 --------VIKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKRKPVF 258 (261)
T ss_pred --------HHHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccCCCCC
Confidence 34566654432 233 57788899999999999999999999999999885
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=400.24 Aligned_cols=251 Identities=23% Similarity=0.327 Sum_probs=224.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++++.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 1 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (255)
T PRK07260 1 FEHIIYEV-EDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQS 79 (255)
T ss_pred CCceEEEE-ECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhh
Confidence 45788888 7899999999996 699999999999999999999999999999999999999999998864221111111
Q ss_pred ---cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 82 ---MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 82 ---~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
+.....+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 158 (255)
T PRK07260 80 LVKIAELVNEIS-FAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNR 158 (255)
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHH
Confidence 222334555 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
+++|+++|++++|+||+++||||+|||++++.+.+.++++++++.||.+++
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYA----------------------------- 209 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....++++.+..|...+..++.++|++|++++|++||+
T Consensus 210 -------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr~ 255 (255)
T PRK07260 210 -------AIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERRR 255 (255)
T ss_pred -------HHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 4467777777788999999999999999999999999999999985
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=408.27 Aligned_cols=259 Identities=25% Similarity=0.345 Sum_probs=220.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC-C--
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-A-- 76 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~-- 76 (539)
|+++.+.+++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 ~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (296)
T PRK08260 1 MTYETIRYDV-ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAP 79 (296)
T ss_pred CCcceEEEee-eCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhccccccc
Confidence 7888899999 7999999999996 699999999999999999999999999999999999999999998753100 0
Q ss_pred ----------C-c--ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCC
Q 009256 77 ----------G-D--VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG 143 (539)
Q Consensus 77 ----------~-~--~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~ 143 (539)
. . ...+.....+++ .+|..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~ 158 (296)
T PRK08260 80 RTPVEADEEDRADPSDDGVRDGGGRVT-LRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPE 158 (296)
T ss_pred ccccccccccccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCC
Confidence 0 0 001111223455 6789999999999999999999999999999999999999999999999999
Q ss_pred cchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhcccccCChHH
Q 009256 144 FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSE 222 (539)
Q Consensus 144 ~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~ 222 (539)
+|++++|++++|..+|++|+++|++++|+||+++||||+|||++++.+++.+++++|++. |+.+++
T Consensus 159 ~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~------------- 225 (296)
T PRK08260 159 AASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVA------------- 225 (296)
T ss_pred cchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHH-------------
Confidence 999999999999999999999999999999999999999999999999999999999985 664432
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCC
Q 009256 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHG-GYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (539)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~ 297 (539)
.+|+.++...... .......|...+..++.++|++|++.+|++||+|.+.+.
T Consensus 226 -----------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~f~~~ 278 (296)
T PRK08260 226 -----------------------LTRQMMWRMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKRPAVFPGK 278 (296)
T ss_pred -----------------------HHHHHHHhcccCCCcHHHHHHHHHHHHHHccChhHHHHHHHHhcCCCCCCCCC
Confidence 3456666543221 223445688889999999999999999999999987553
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-51 Score=402.93 Aligned_cols=253 Identities=26% Similarity=0.364 Sum_probs=217.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
++.+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~-~~ 89 (273)
T PRK07396 12 YEDILYKS-ADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVD-DD 89 (273)
T ss_pred CcceEEEe-cCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccc-hh
Confidence 46788888 7899999999996 6999999999999999999999999999999998 6999999999875321111 01
Q ss_pred ccch-HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 81 LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~-~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.... ...+++ +.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a 168 (273)
T PRK07396 90 GVPRLNVLDLQ-RLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKA 168 (273)
T ss_pred hhhhhHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHH
Confidence 1111 122455 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|+++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 169 ~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T PRK07396 169 REIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR------------------------------ 218 (273)
T ss_pred HHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.... ..+...+.|...+..++.++|++|++.+|++||+|++.
T Consensus 219 ------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr~p~~~ 267 (273)
T PRK07396 219 ------CLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKRQPDFS 267 (273)
T ss_pred ------HHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCCCCCCC
Confidence 33455554432 34444557888889999999999999999999998764
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=401.78 Aligned_cols=250 Identities=26% Similarity=0.409 Sum_probs=216.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..........
T Consensus 7 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 85 (262)
T PRK06144 7 TDELLLEV-RGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAV 85 (262)
T ss_pred CCceEEEe-eCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHH
Confidence 45688998 7999999999996 6999999999999999999999999999999998 7999999999875432111111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCccc-CCCCCCcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT-LGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++|..+|
T Consensus 86 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a 164 (262)
T PRK06144 86 AYERRIDRVL-GALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARV 164 (262)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHH
Confidence 2222344566 6789999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~------------------------------ 214 (262)
T PRK06144 165 KDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLR------------------------------ 214 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++..... .++.+.+.+..++.++|++|++.+|++||+|++
T Consensus 215 ------~~K~~l~~~~~~----~l~~~~~~~~~~~~~~~~~e~~~af~~kr~p~~ 259 (262)
T PRK06144 215 ------ATKEALRRLRRE----GLPDGDDLIRMCYMSEDFREGVEAFLEKRPPKW 259 (262)
T ss_pred ------HHHHHHHHhhhc----CHHHHHHHHHHHhcChHHHHHHHHHhcCCCCCC
Confidence 335555554333 345566788899999999999999999998875
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-51 Score=404.13 Aligned_cols=256 Identities=19% Similarity=0.254 Sum_probs=223.8
Q ss_pred CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC--CCcccCCCchhhhhhcCCCc-cc
Q 009256 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG--GRFSGGFDINVFQKVHGAGD-VS 80 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g--~~F~aG~Dl~~~~~~~~~~~-~~ 80 (539)
+.+.+++.+++|++||||||+.|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|.|++++........ ..
T Consensus 11 ~~i~~~~~~~~Va~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~ 90 (278)
T PLN03214 11 PGVRVDRRPGGIAVVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA 90 (278)
T ss_pred CceEEEEcCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence 5688887348899999999988999999999999999999999999999999987 69999999998753211110 11
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCC-CCCcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV-IPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~l~r~vG~~~a 159 (539)
.+......++ .+|.++||||||+|||+|+|||++|+++|||||++++++|++||+++|+ +|++|++++|++++|+.+|
T Consensus 91 ~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a 169 (278)
T PLN03214 91 EFWLTQTTFL-VRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVA 169 (278)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHH
Confidence 1211223455 6689999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|||++++.+.+.+++++|++.||.+++
T Consensus 170 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 219 (278)
T PLN03214 170 ESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARA------------------------------ 219 (278)
T ss_pred HHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.+++....+++++++.|...+..++.++|++|++++|+||.+.||-.
T Consensus 220 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek~~~~~~~ 270 (278)
T PLN03214 220 ------ATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMERLSSGKEK 270 (278)
T ss_pred ------HHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccc
Confidence 346677777777788999999999999999999999999999999887643
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-51 Score=401.43 Aligned_cols=251 Identities=25% Similarity=0.292 Sum_probs=211.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc-cc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~ 80 (539)
|+.+.++.++++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++........ ..
T Consensus 10 ~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 89 (268)
T PRK07327 10 YPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRA 89 (268)
T ss_pred CCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHH
Confidence 5678888734789999999997 699999999999999999999999999999999999999999998754221111 11
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus 90 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 168 (268)
T PRK07327 90 RVWREARDLV-YNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAK 168 (268)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHH
Confidence 1122234555 668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
++++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 169 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 217 (268)
T PRK07327 169 YYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIR------------------------------- 217 (268)
T ss_pred HHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999986543
Q ss_pred chhHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 241 MPQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~---~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.... .+++..+..| ..++.++|+++++.+|++||+|++
T Consensus 218 -----~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr~p~~ 265 (268)
T PRK07327 218 -----WTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKRAPDF 265 (268)
T ss_pred -----HHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcCCCCC
Confidence 23444443211 1234444443 347889999999999999999885
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-51 Score=402.94 Aligned_cols=255 Identities=25% Similarity=0.342 Sum_probs=216.1
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC---cc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---~~ 79 (539)
+.+.++..+++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... ..
T Consensus 9 ~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (276)
T PRK05864 9 SLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRP 88 (276)
T ss_pred CceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccch
Confidence 457777535789999999996 69999999999999999999999999999999999999999999874321100 00
Q ss_pred c---ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCC-CcchhhccccccC
Q 009256 80 S---LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIP-GFGGTQRLPRLVG 155 (539)
Q Consensus 80 ~---~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~vG 155 (539)
. .......+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++|++++|++++|
T Consensus 89 ~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG 167 (276)
T PRK05864 89 TYALRSMELLDDVI-LALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIG 167 (276)
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhC
Confidence 0 1112233455 668999999999999999999999999999999999999999999999997 7889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 168 ~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 221 (276)
T PRK05864 168 SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIE-------------------------- 221 (276)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999886543
Q ss_pred HhCCCchhHHHHHHHHHHhhcC-CchhHHHHHHHHHH-HHhCCHHHHhHHHHHHhhhhccCC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFK-ELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~e~~~~~-~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++..... ++++.+..|...+. ..+.++|++|++.+|++||+|++.
T Consensus 222 ----------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr~p~~~ 273 (276)
T PRK05864 222 ----------LTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKRPPVFT 273 (276)
T ss_pred ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccCCCCCC
Confidence 345666665554 67777777765332 357899999999999999988753
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-51 Score=397.30 Aligned_cols=248 Identities=28% Similarity=0.338 Sum_probs=217.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.+.+++ +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus 1 ~~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~-~~~ 77 (254)
T PRK08259 1 MS-MSVRVER-NGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRG-NRL 77 (254)
T ss_pred CC-ceEEEEE-ECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccc-hhh
Confidence 66 4588888 7899999999996 699999999999999999999999999999999999999999998764321 111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.. ....... ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+|
T Consensus 78 ~~--~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 78 HP--SGDGPMG-PSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hh--hhcchhh-hHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 10 0011112 22347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLR------------------------------ 204 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....+++++++.|...+..++. +|++|++.+|++|++
T Consensus 205 ------~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~~ 249 (254)
T PRK08259 205 ------ADRLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGAG 249 (254)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhhc
Confidence 346777777777889999999988888887 999999999999876
|
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=395.57 Aligned_cols=247 Identities=24% Similarity=0.403 Sum_probs=217.4
Q ss_pred CCCCcEEEEEecC---cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC
Q 009256 1 MAAPRVTMEVGND---GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (539)
Q Consensus 1 M~~~~v~~~~~~~---~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~ 76 (539)
|+ +.+.+++ ++ +|++||||||+ .|++|.+|+++|.++++.+++|+++|+|||||.|++||+|+|++++......
T Consensus 1 m~-~~i~~~~-~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~ 78 (251)
T PRK06023 1 MT-DHILVER-PGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMG 78 (251)
T ss_pred CC-ceEEEEe-ecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhcccc
Confidence 66 4688888 55 49999999996 6999999999999999999999999999999999999999999987642211
Q ss_pred CcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
. ..+.....+++ ..|.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|++++|.
T Consensus 79 ~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~ 155 (251)
T PRK06023 79 G--TSFGSEILDFL-IALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGH 155 (251)
T ss_pred c--hhhHHHHHHHH-HHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhH
Confidence 1 11222334566 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|++++++|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~--------------------------- 208 (251)
T PRK06023 156 QRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQ--------------------------- 208 (251)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999876543
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhh
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~k 289 (539)
.+|+.++.. ..++++.++.|...+..++.++|+++++++|++|
T Consensus 209 ---------~~K~~l~~~-~~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 209 ---------IARDLMRGP-REDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred ---------HHHHHHHhc-hhhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 335566554 3457888888999999999999999999999985
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=394.38 Aligned_cols=245 Identities=26% Similarity=0.362 Sum_probs=211.3
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchH
Q 009256 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
|.+++ +++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|.|++++... ....+...
T Consensus 3 v~~~~-~~~v~~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~----~~~~~~~~ 77 (251)
T TIGR03189 3 VWLER-DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPD----QCAAMLAS 77 (251)
T ss_pred EEEEe-eCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCch----hHHHHHHH
Confidence 67788 78999999999988999999999999999999999999999999999999999999975321 11112222
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHc
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (539)
..+++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+ +++++|++++|+.+|++|++|
T Consensus 78 ~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~lt 155 (251)
T TIGR03189 78 LHKLV-IAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYS 155 (251)
T ss_pred HHHHH-HHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHc
Confidence 34556 6799999999999999999999999999999999999999999999999997 467899999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHH-HHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLW-ALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~-a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
|++++|+||+++||||+|+|+.+ +++.++ +++|++.||.+++
T Consensus 156 g~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~----------------------------------- 198 (251)
T TIGR03189 156 GRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLR----------------------------------- 198 (251)
T ss_pred CCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 99999999999999999998644 456665 6899999886543
Q ss_pred HHHHHHHHHhhcCCchhHH-HHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 245 QACLDVIEEGIVHGGYSGV-LKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l-~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++++ +.|...+..++.|+|++|++++|++||+|++.
T Consensus 199 -~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 249 (251)
T TIGR03189 199 -FAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKRPALWE 249 (251)
T ss_pred -HHHHHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcCCCCCC
Confidence 346677766667777766 47888899999999999999999999998763
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=402.86 Aligned_cols=254 Identities=22% Similarity=0.207 Sum_probs=215.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchh-hhhh---c-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINV-FQKV---H- 74 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~-~~~~---~- 74 (539)
|+++.+.++. +++|++||||||+ +|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|+++ +... .
T Consensus 2 ~~~~~v~~~~-~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~ 80 (298)
T PRK12478 2 PDFQTLLYTT-AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMM 80 (298)
T ss_pred CCceEEEEec-cCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcc
Confidence 7788889998 8999999999996 699999999999999999999999999999999999999999986 3210 0
Q ss_pred CCC---ccccc---c-h--HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccC-CCCCCc
Q 009256 75 GAG---DVSLM---P-D--VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL-GVIPGF 144 (539)
Q Consensus 75 ~~~---~~~~~---~-~--~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~-Gl~p~~ 144 (539)
... ....+ . . .....+ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++ |++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~-- 157 (298)
T PRK12478 81 TDGRWDPGKDFAMVTARETGPTQKF-MAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL-- 157 (298)
T ss_pred cccccCchhhhhhhhhhhcchHHHH-HHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--
Confidence 000 00111 0 0 011244 45899999999999999999999999999999999999999999997 8875
Q ss_pred chhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHH
Q 009256 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (539)
Q Consensus 145 g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (539)
++++ .+++|..+|++|++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 158 ~~~~--~~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------- 220 (298)
T PRK12478 158 TGMW--LYRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQ--------------- 220 (298)
T ss_pred hhHH--HHHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 3333 35699999999999999999999999999999999999999999999999999886543
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhCCHHHH--------hHHHHHHhhhhccCC
Q 009256 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSR--------GLVHVFFAQRATSKV 295 (539)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~e~~~~~~~~~s~~~~--------~~~~af~~kr~~~~~ 295 (539)
.+|++++.... .+++++++.|...+..++.|+|++ ||+.+|+|||+|++.
T Consensus 221 ---------------------~~K~~l~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~egv~Af~ekR~p~f~ 279 (298)
T PRK12478 221 ---------------------AQKLIVNQAYENMGLASTQTLGGILDGLMRNTPDALEFIRTAETQGVRAAVERRDGPFG 279 (298)
T ss_pred ---------------------HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34677777655 468999999999999999999997 599999999999865
Q ss_pred C
Q 009256 296 P 296 (539)
Q Consensus 296 ~ 296 (539)
.
T Consensus 280 ~ 280 (298)
T PRK12478 280 D 280 (298)
T ss_pred c
Confidence 3
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=395.65 Aligned_cols=247 Identities=27% Similarity=0.311 Sum_probs=219.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~ 77 (249)
T PRK05870 1 MM-DPVLLDV-DDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRP-A 77 (249)
T ss_pred CC-ccEEEEc-cCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccc-h
Confidence 55 4578888 7999999999996 69999999999999999999999999999999999999999999986532211 1
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
........+.+ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 78 ~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 78 EDGLRRIYDGF-LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 11122233455 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|+ +++.+++.++++++++.||.+++
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL------------------------------ 204 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 9999999999999999999999999 78999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhh
Q 009256 240 NMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~-~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~k 289 (539)
.+|+.++.... .+++++++.|...+..++.++|++|++.+|+++
T Consensus 205 ------~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 205 ------ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred ------HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 44677777766 788999999999999999999999999999984
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=403.27 Aligned_cols=254 Identities=27% Similarity=0.309 Sum_probs=215.5
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcc
Q 009256 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+.|.++.+ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||||.| ++||+|+|++++....... .
T Consensus 64 ~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~-~ 142 (327)
T PLN02921 64 FTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVG-P 142 (327)
T ss_pred CceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccc-h
Confidence 456778873 4899999999996 6999999999999999999999999999999999 7999999999875321110 0
Q ss_pred cccch-HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 80 SLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 80 ~~~~~-~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
..... ...+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 143 ~~~~~~~~~~l~-~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~ 221 (327)
T PLN02921 143 DDAGRLNVLDLQ-IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKK 221 (327)
T ss_pred hHHHHHHHHHHH-HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 11111 112345 6789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++|+++|++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~----------------------------- 272 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIR----------------------------- 272 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999986543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++..... .....+.|...+..++.++|++|++.+|++||+|++.
T Consensus 273 -------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr~p~f~ 321 (327)
T PLN02921 273 -------VLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGRAPDFS 321 (327)
T ss_pred -------HHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 335566554432 2333344558888999999999999999999998853
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=395.52 Aligned_cols=252 Identities=37% Similarity=0.577 Sum_probs=219.5
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
.++.+.++. .++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..........
T Consensus 3 ~~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (257)
T COG1024 3 TYETILVER-EDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAE 81 (257)
T ss_pred CCCeeEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHH
Confidence 456788888 6779999999996 69999999999999999999999999999999999999999999987511111111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+....+.++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 82 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~ 160 (257)
T COG1024 82 NLMQPGQDLL-RALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAK 160 (257)
T ss_pred HHHhHHHHHH-HHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHH
Confidence 2223334466 779999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+|++||+.++++||+++||||+++++ +++++.+.+++++++. ||.+++
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~------------------------------ 209 (257)
T COG1024 161 ELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALA------------------------------ 209 (257)
T ss_pred HHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHH------------------------------
Confidence 99999999999999999999999985 7999999999999998 543322
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhcc
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS 293 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~ 293 (539)
.+|+.++.....++++.+..|...+...+.++|++|++.+|++ |+|.
T Consensus 210 ------~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~-r~p~ 256 (257)
T COG1024 210 ------ATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE-RKPV 256 (257)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc-cCCC
Confidence 3456677776666888899999999989999999999999999 7665
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-50 Score=391.67 Aligned_cols=251 Identities=28% Similarity=0.410 Sum_probs=224.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.+.....
T Consensus 1 ~~~~~v~~~~-~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~-- 77 (258)
T PRK06190 1 MTEPILLVET-HDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAY-- 77 (258)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchh--
Confidence 8999999999 8999999999996 69999999999999999999999999999999999999999999886422111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.. .....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 78 ~~-~~~~~~~~-~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 78 GA-QDALPNPS-PAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred hH-HHHHHHHH-HHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11 12234566 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|+|++++++++.+++++|++.||.+++
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVR------------------------------ 205 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999886543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCC---HHHHhHHHHHHhhhhc
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML---DTSRGLVHVFFAQRAT 292 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s---~~~~~~~~af~~kr~~ 292 (539)
.+|+.++.....+++++++.|...+..++.| +..++...+|+.+.+.
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 255 (258)
T PRK06190 206 ------ALKASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMARGRA 255 (258)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhh
Confidence 4467788777888999999999999999999 6677777777776543
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=393.96 Aligned_cols=233 Identities=41% Similarity=0.667 Sum_probs=226.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.++||+|||+|.||++||..++..||+|+++|++++.++++...+.+.+.+++++|.+++++.+..+++++.++++.+++
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~ 81 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALK 81 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhc
Confidence 57899999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+|||+++|+.++|+.+|+++..++++++|++||||++++++++..+.+|+||+|+||||||+.+++||++++..|++
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~ 161 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSD 161 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++.+|.+.+||.|++++|.|||++||++.++++||+.++++|+ ++++||+++ .++|+|||||+++|..+
T Consensus 162 e~~~~~~~~~~~igK~~vv~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~pmGpf~l~D~~G 236 (307)
T COG1250 162 ETVERVVEFAKKIGKTPVVVKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLPMGPFELADLIG 236 (307)
T ss_pred HHHHHHHHHHHHcCCCCEeecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCccHHHHHHHHh
Confidence 99999999999999999888999999999999999999999999995 999999999 68999999999999753
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=395.37 Aligned_cols=250 Identities=28% Similarity=0.438 Sum_probs=220.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+.+.+++ +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus 3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~ 80 (262)
T PRK07509 3 DRVSVTI-EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNA-VKLL 80 (262)
T ss_pred ceEEEEe-eCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchh-hhhH
Confidence 6788999 7999999999995 69999999999999999999999999999999999999999999876432111 1111
Q ss_pred -------chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 83 -------PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 83 -------~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
.....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 81 FKRLPGNANLAQRVS-LGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred hhhhHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 11223344 5678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|++++++|++++|+||+++||||+|++ ++.+++.++++++++.||.+++
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~-------------------------- 211 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIA-------------------------- 211 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999995 3688999999999999876543
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....++++.++.|...+..++.++|+++++.+|++||+|++
T Consensus 212 ----------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr~p~~ 260 (262)
T PRK07509 212 ----------AAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKRAPKF 260 (262)
T ss_pred ----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 3466777777778889999999999999999999999999999998874
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-49 Score=388.86 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=216.2
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
+.++. +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.... ...+..
T Consensus 2 i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~----~~~~~~ 76 (248)
T PRK06072 2 IKVES-REGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDF----AIDLRE 76 (248)
T ss_pred eEEEE-ECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhh----HHHHHH
Confidence 56777 7899999999996 69999999999999999999999999999999999999999999875421 111223
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
.+..++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|. +|+++++
T Consensus 77 ~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll 154 (248)
T PRK06072 77 TFYPII-REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILV 154 (248)
T ss_pred HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHH
Confidence 344556 67899999999999999999999999999999999999999999999999999999999999996 9999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
+|++++|+||+++||||++ +++.+++.++|+++++.||.+++
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~----------------------------------- 196 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYI----------------------------------- 196 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 9999999999999999963 46789999999999999875443
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....++++.++.|.+.+..++.++|++|++.+|++||+|++.
T Consensus 197 -~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~~ 246 (248)
T PRK06072 197 -AAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKREPKFK 246 (248)
T ss_pred -HHHHHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCCCCCCC
Confidence 34667777767788999999999999999999999999999999998853
|
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=385.79 Aligned_cols=238 Identities=25% Similarity=0.382 Sum_probs=209.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
+++++ +++|++||||||+ .|++|.+|+.+|.+++++++.+ ++|+|||||.|++||+|+|+++... ...+..
T Consensus 2 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~------~~~~~~ 73 (243)
T PRK07854 2 IGVTR-DGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY------ADDFPD 73 (243)
T ss_pred ceEEE-eCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh------HHHHHH
Confidence 56788 7899999999996 6999999999999999999865 9999999999999999999985311 111223
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
...+++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++|++
T Consensus 74 ~~~~~~-~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l 152 (243)
T PRK07854 74 ALIEML-HAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLL 152 (243)
T ss_pred HHHHHH-HHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHH
Confidence 334566 6789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
||++++|+||+++||||+|++ +. ++.+++++|++.||.+++
T Consensus 153 tg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~----------------------------------- 193 (243)
T PRK07854 153 GAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQ----------------------------------- 193 (243)
T ss_pred cCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999975 22 789999999999876543
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.. .+++++++.|...+..++.++|+++++.+|++||+|.+
T Consensus 194 -~~K~~l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr~p~~ 240 (243)
T PRK07854 194 -HAKRVLNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKRPPKF 240 (243)
T ss_pred -HHHHHHHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCCCCCC
Confidence 345666654 56788899999999999999999999999999998875
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=387.16 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=215.2
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+|+++.+++ +++|++||||||+ .|++|.+|+++|.++++.++ +++|+|||||.|++||+|+|++++.+.......
T Consensus 1 ~~~~~i~~~~-~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~ 77 (255)
T PRK07112 1 MDYQTIRVRQ-QGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRA 77 (255)
T ss_pred CCCceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchh
Confidence 7889999999 7999999999996 69999999999999999998 469999999999999999999988653221111
Q ss_pred c-ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 80 ~-~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
. .......+++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ +.+|++++|..+
T Consensus 78 ~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~ 155 (255)
T PRK07112 78 DLIDAEPLYDLW-HRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQK 155 (255)
T ss_pred hhhhHHHHHHHH-HHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHH
Confidence 1 1122234566 679999999999999999999999999999999999999999999999999865 567999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|||+++. .+.++++++++.||.+++
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~----------------------------- 204 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVA----------------------------- 204 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHH-----------------------------
Confidence 9999999999999999999999999987663 578899999999876543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.. ...+++.++.|...+..++.++|+++++.+|++||+|.+.
T Consensus 205 -------~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr~p~~~ 253 (255)
T PRK07112 205 -------RYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETGKFPWE 253 (255)
T ss_pred -------HHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCCCCC
Confidence 234555543 3457888999999999999999999999999999988764
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-49 Score=388.20 Aligned_cols=250 Identities=25% Similarity=0.345 Sum_probs=218.8
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhc-CCCc-cc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH-GAGD-VS 80 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~-~~ 80 (539)
+.+.++. +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.... .... ..
T Consensus 6 ~~i~~~~-~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 84 (260)
T PRK07827 6 TLVRYAV-DGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAV 84 (260)
T ss_pred cceEEEe-eCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHH
Confidence 4577888 7899999999996 69999999999999999999999999999999999999999999875421 1110 11
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++ ..+|+
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~ 162 (260)
T PRK07827 85 ARAREMTALL-RAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAA 162 (260)
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHH
Confidence 1222334566 679999999999999999999999999999999999999999999999999999999999875 57999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
+++++|++++|+||+++||||++++ ++.+++.++++++++.|+.+++
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~------------------------------- 209 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLA------------------------------- 209 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999974 5999999999999999875443
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.+++.....+++.++.|...+..++.++|+++++++|++||+|++
T Consensus 210 -----~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr~p~~ 258 (260)
T PRK07827 210 -----ESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKRPPRW 258 (260)
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCCCCCC
Confidence 4467777777778899999999999999999999999999999998764
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-50 Score=389.85 Aligned_cols=244 Identities=35% Similarity=0.557 Sum_probs=222.8
Q ss_pred EEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchH
Q 009256 7 TMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 7 ~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
.+++ +|+|++|+|||| +.|++|.+|+++|.++++.++.|+++|+||++|.+++||+|.|++++.... ......+...
T Consensus 1 ~~~~-~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~-~~~~~~~~~~ 78 (245)
T PF00378_consen 1 KYEI-EDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSD-EEEAREFFRR 78 (245)
T ss_dssp EEEE-ETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHH-HHHHHHHHHH
T ss_pred CEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccc-cccccccchh
Confidence 3677 799999999999 689999999999999999999999999999999999999999999998762 2223345555
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHc
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (539)
...++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++++++
T Consensus 79 ~~~l~-~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~ 157 (245)
T PF00378_consen 79 FQELL-SRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLT 157 (245)
T ss_dssp HHHHH-HHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccc
Confidence 66777 77999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHH
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (539)
|++++|+||+++||||+|+|++++.+++.+++++++..|+.+++
T Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------------ 201 (245)
T PF00378_consen 158 GEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR------------------------------------ 201 (245)
T ss_dssp TCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH------------------------------------
T ss_pred cccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH------------------------------------
Confidence 99999999999999999999999999999999999999875543
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhh
Q 009256 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~k 289 (539)
.+|+.++......+++.++.|...+..++.++|++|++++|+||
T Consensus 202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 44677777777888999999999999999999999999999997
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=401.51 Aligned_cols=290 Identities=24% Similarity=0.345 Sum_probs=220.5
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC-cc-
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG-DV- 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~-~~- 79 (539)
+.+.+++ +++|++||||||+ .|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....... ..
T Consensus 3 ~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (342)
T PRK05617 3 DEVLAEV-EGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLA 81 (342)
T ss_pred ceEEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchh
Confidence 4688888 7999999999996 6999999999999999999999999999999998 8999999999875422111 00
Q ss_pred c-ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 80 S-LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 80 ~-~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
. .+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus 82 ~~~~~~~~~~~~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~ 159 (342)
T PRK05617 82 ADRFFREEYRLN-ALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-AL 159 (342)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HH
Confidence 0 1112223455 6789999999999999999999999999999999999999999999999999999999999977 78
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHH------------HHHhcC---c--------hhhhhhhccc
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL------------DIAARR---K--------PWIRSLHRTD 215 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~------------~la~~~---~--------~~~~~~~~~~ 215 (539)
|++|++||++++|+||+++||||+|+|++++.+...++++ .+.+.+ | ..+...+...
T Consensus 160 a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 239 (342)
T PRK05617 160 GTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGD 239 (342)
T ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998876332221 111110 0 0000111111
Q ss_pred ccCChHHHHHHH--HHHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHH-hh-h
Q 009256 216 KLGSLSEAREVL--KLARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF-AQ-R 290 (539)
Q Consensus 216 ~~~~~~~~~~~~--~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~-~k-r 290 (539)
.+..+..+++.- .++.+.++ -......+...+|++++++...+++++++.|...+..++.++|++|++++|+ +| |
T Consensus 240 ~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~egv~afl~ek~r 319 (342)
T PRK05617 240 TVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTLEECLRRELRLALAMLRSPDFVEGVRAVLIDKDR 319 (342)
T ss_pred CHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCchhhccceEEEcCCC
Confidence 111111111000 01111111 2223344666788999988888999999999999999999999999999997 76 7
Q ss_pred hccCCC
Q 009256 291 ATSKVP 296 (539)
Q Consensus 291 ~~~~~~ 296 (539)
+|++.+
T Consensus 320 ~p~~~~ 325 (342)
T PRK05617 320 NPKWSP 325 (342)
T ss_pred CCCCCC
Confidence 777644
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=381.36 Aligned_cols=245 Identities=21% Similarity=0.290 Sum_probs=220.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|.++.+.+++ +++|++|+||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~-~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 78 (249)
T PRK07110 2 MMKVVELREV-EEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGK-- 78 (249)
T ss_pred CCCceEEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchh--
Confidence 5678888998 7999999999996 69999999999999999999999999999999999999999999876432211
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.. .+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+.+|
T Consensus 79 ~~~~~--~~~~-~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 GTFTE--ANLY-SLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred hhHhh--HHHH-HHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 11111 3556 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++++||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 205 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLV------------------------------ 205 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~ 287 (539)
.+|+.++.....++++.++.|...+..++.++|++|++++..
T Consensus 206 ------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~~ 247 (249)
T PRK07110 206 ------LLKDHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESLY 247 (249)
T ss_pred ------HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHhc
Confidence 456778887788899999999999999999999999998753
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=390.26 Aligned_cols=253 Identities=25% Similarity=0.312 Sum_probs=213.5
Q ss_pred cEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-------CCcccCCCchhhhhhc-
Q 009256 5 RVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQKVH- 74 (539)
Q Consensus 5 ~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-------~~F~aG~Dl~~~~~~~- 74 (539)
++.++++ +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++....
T Consensus 24 ~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~ 103 (302)
T PRK08321 24 DITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGY 103 (302)
T ss_pred eEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccc
Confidence 4667663 5789999999996 5999999999999999999999999999999998 5999999999763210
Q ss_pred ---CCC--c-cc--ccch-HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEee-CCceEeCCcccCCCCCCc
Q 009256 75 ---GAG--D-VS--LMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGF 144 (539)
Q Consensus 75 ---~~~--~-~~--~~~~-~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~ 144 (539)
... . .. .... ...+++ +.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~ 182 (302)
T PRK08321 104 QYAEGDEADTVDPARAGRLHILEVQ-RLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGG 182 (302)
T ss_pred cccccccccchhhhHHHHHHHHHHH-HHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCc
Confidence 000 0 00 0001 111344 56889999999999999999999999999999999 699999999999999999
Q ss_pred chhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHH
Q 009256 145 GGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAR 224 (539)
Q Consensus 145 g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~ 224 (539)
+++++|+|++|..+|+++++||++++|+||+++||||+|||++++.+++.+++++|++.|+.+++
T Consensus 183 ~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------- 247 (302)
T PRK08321 183 YGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMR--------------- 247 (302)
T ss_pred hHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 225 EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.... .+......|...+..++.++|+++++.+|++||+|.+.
T Consensus 248 ---------------------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr~p~~~ 296 (302)
T PRK08321 248 ---------------------MLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKRDPDWS 296 (302)
T ss_pred ---------------------HHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccCCCCCC
Confidence 33556655433 34444566888999999999999999999999998863
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=400.19 Aligned_cols=289 Identities=22% Similarity=0.256 Sum_probs=218.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc-ccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSL 81 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~ 81 (539)
+.+.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|++||+|||||.|++||+|+|++++........ ...
T Consensus 11 ~~v~~~~-~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 89 (379)
T PLN02874 11 EVVLGEE-KGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLE 89 (379)
T ss_pred CceEEEE-ECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHH
Confidence 4688888 7999999999996 699999999999999999999999999999999999999999999854221111 011
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ++++
T Consensus 90 ~~~~~~~l~-~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~ 167 (379)
T PLN02874 90 VVYRMYWLC-YHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEY 167 (379)
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHH
Confidence 111122334 56899999999999999999999999999999999999999999999999999999999999985 8999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhh----------------------cccccCC
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLH----------------------RTDKLGS 219 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~----------------------~~~~~~~ 219 (539)
|++||++++|+||+++||||+|||++++.+.+.++. ++...+...+..+. +.-..+.
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~-~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 246 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEKLPELEKRLL-NLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDT 246 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCC
Confidence 999999999999999999999999988876322221 00000000000000 0000001
Q ss_pred hHHHHHHHH---------HHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhC---CHHHHhHHHHH
Q 009256 220 LSEAREVLK---------LARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGLVHVF 286 (539)
Q Consensus 220 ~~~~~~~~~---------~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~---s~~~~~~~~af 286 (539)
..+..+.+. ++...++ -......+...+|+.++.+...+++++++.|......++. ++|++||+++|
T Consensus 247 ~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~Af 326 (379)
T PLN02874 247 VEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRKQSLAECLKKEFRLTMNILRSTVSDDVYEGIRAL 326 (379)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCcCcchhhccceE
Confidence 111111110 1222222 2223445778889999999888999999999888888877 99999999999
Q ss_pred H-hh-hhccCCC
Q 009256 287 F-AQ-RATSKVP 296 (539)
Q Consensus 287 ~-~k-r~~~~~~ 296 (539)
+ +| |+|++.+
T Consensus 327 lidK~r~P~w~~ 338 (379)
T PLN02874 327 VIDKDNAPKWNP 338 (379)
T ss_pred EEcCCCCCCCCC
Confidence 7 88 8888765
|
|
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=408.89 Aligned_cols=256 Identities=15% Similarity=0.146 Sum_probs=221.9
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEecCCC-CcccCC
Q 009256 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG-RFSGGF 65 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~~~~~~~-d~~v~~vvl~g~g~-~F~aG~ 65 (539)
|+++.++++ +++|++||||||+ + |+||.+|+.+|.++++.++. |+++|+|||||+|+ +||+|+
T Consensus 259 ~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~ 338 (550)
T PRK08184 259 YRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAA 338 (550)
T ss_pred eEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCC
Confidence 455666553 5889999999995 5 69999999999999999986 79999999999994 999999
Q ss_pred CchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc-Cccccch-hHhhhccCEEEee-------CCceEeCCcc
Q 009256 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE-GLALGGG-LELAMGCHARIAA-------PKTQLGLPEL 136 (539)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~-G~a~GgG-~~lal~~D~~ia~-------~~a~f~~pe~ 136 (539)
|++.+.. .............+.++ ++|.++||||||+|| |+|+||| ++|+|+||+|||+ ++++|++||+
T Consensus 339 Dl~~~~~-~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~ 416 (550)
T PRK08184 339 DATLLAH-KDHWLVRETRGYLRRTL-KRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSAL 416 (550)
T ss_pred Chhhhcc-cchHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccc
Confidence 9874321 11100011122334456 679999999999997 9999999 9999999999999 9999999999
Q ss_pred cCCCCCCcchhhccccc-cCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc
Q 009256 137 TLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (539)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~-vG~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (539)
++|++|++|++++|+|+ +|.++|+++ ++||++++|+||+++||||+|||++++++++.+++++|++.||.+++
T Consensus 417 ~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~---- 492 (550)
T PRK08184 417 NFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALT---- 492 (550)
T ss_pred cccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHH----
Confidence 99999999999999998 799999997 58999999999999999999999999999999999999999986543
Q ss_pred ccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHhCCHHHHh---HHHHHHhh
Q 009256 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (539)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~e~~~~~~~~~s~~~~~---~~~af~~k 289 (539)
.+|+.++.+...+++++ +..|.+.|..+++|+|++| ++++|+||
T Consensus 493 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 540 (550)
T PRK08184 493 --------------------------------GMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTG 540 (550)
T ss_pred --------------------------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccC
Confidence 45778888888999999 9999999999999999999 99999999
Q ss_pred hhccCCC
Q 009256 290 RATSKVP 296 (539)
Q Consensus 290 r~~~~~~ 296 (539)
|+|++..
T Consensus 541 r~~~f~~ 547 (550)
T PRK08184 541 QKAQFDW 547 (550)
T ss_pred CCCCCCC
Confidence 9998643
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=406.30 Aligned_cols=254 Identities=16% Similarity=0.133 Sum_probs=220.9
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-C-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEecCCCC-cccCC
Q 009256 3 APRVTMEVG-NDGVAIITLINPP-V-------------NALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGNGGR-FSGGF 65 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~-------------Nal~~~~~~~l~~~~~~~~-~d~~v~~vvl~g~g~~-F~aG~ 65 (539)
|.+|.+..+ +++|++||||||+ . |+||.+|+.+|.++++.++ +|+++|+|||||.|+. ||+|+
T Consensus 255 ~~~~~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~ 334 (546)
T TIGR03222 255 YPTVDVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAA 334 (546)
T ss_pred eeeEEEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCc
Confidence 345555443 6899999999995 7 9999999999999999998 4599999999999987 99999
Q ss_pred CchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE-cCccccch-hHhhhccCEEEe-------eCCceEeCCcc
Q 009256 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIA-------APKTQLGLPEL 136 (539)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav-~G~a~GgG-~~lal~~D~~ia-------~~~a~f~~pe~ 136 (539)
|++.+... ............++++ .+|.++||||||+| ||+|+||| ++|+++||+||+ +++++|++||+
T Consensus 335 Dl~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~ 412 (546)
T TIGR03222 335 DALLEAHK-DHWFVRETIGYLRRTL-ARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSEL 412 (546)
T ss_pred Cccccccc-cchhHHHHHHHHHHHH-HHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcc
Confidence 99843211 1100111112233456 67999999999999 89999999 999999999999 89999999999
Q ss_pred cCCCCCCcchhhcccccc-CHHHH--HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhc
Q 009256 137 TLGVIPGFGGTQRLPRLV-GLSKA--IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHR 213 (539)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~v-G~~~a--~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~ 213 (539)
++|++|++|++++|+|++ |.++| +++++||++++|+||++||||++|+|++++++++.+++++|++.||.+++
T Consensus 413 ~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---- 488 (546)
T TIGR03222 413 NFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALT---- 488 (546)
T ss_pred ccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHH----
Confidence 999999999999999998 99999 55999999999999999999999999999999999999999999986554
Q ss_pred ccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHhCCHHHHh---HHHHHHhh
Q 009256 214 TDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSG-VLKEAKVFKELVMLDTSRG---LVHVFFAQ 289 (539)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-l~~e~~~~~~~~~s~~~~~---~~~af~~k 289 (539)
.+|+.++.....+++.+ +..|...|..++.|+|++| ++++|+||
T Consensus 489 --------------------------------~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ek 536 (546)
T TIGR03222 489 --------------------------------GLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSG 536 (546)
T ss_pred --------------------------------HHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccC
Confidence 34678888888999999 9999999999999999999 99999999
Q ss_pred hhccC
Q 009256 290 RATSK 294 (539)
Q Consensus 290 r~~~~ 294 (539)
|+|++
T Consensus 537 r~p~f 541 (546)
T TIGR03222 537 KKAQF 541 (546)
T ss_pred CCCCC
Confidence 99875
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=347.10 Aligned_cols=246 Identities=29% Similarity=0.460 Sum_probs=222.9
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
+.||.+|-+||| +.|+++.-|+++|.++++++..|+.+|+|+|++. +..||+|+||+|...++..+ +..+....+.+
T Consensus 38 ~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~E-v~~fV~~lR~~ 116 (291)
T KOG1679|consen 38 DEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSE-VTRFVNGLRGL 116 (291)
T ss_pred CCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHH-HHHHHHHHHHH
Confidence 568999999999 5799999999999999999999999999999764 68899999999998775443 44555666677
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~ 169 (539)
+ ..|+++|.||||++.|.|+|||+||+|+||+|+|+++++||++|.+++++|+.||||||||.+|...|+|+++|++.+
T Consensus 117 ~-~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl 195 (291)
T KOG1679|consen 117 F-NDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVL 195 (291)
T ss_pred H-HHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheec
Confidence 7 669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCcceecCcc----hHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHH
Q 009256 170 TSEEGWKLGLIDAVVTSE----ELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (539)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~----~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (539)
++.||..+||||+||... ...+.+.++|++|.-+.|.++ +
T Consensus 196 ~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiav------------------------------------r 239 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAV------------------------------------R 239 (291)
T ss_pred cchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhh------------------------------------h
Confidence 999999999999999765 566778888888877766443 3
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|.+|+.+...++..++..|..++.+...+.|--|++.+|.|||+|...
T Consensus 240 ~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr~p~y~ 289 (291)
T KOG1679|consen 240 LAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKRKPEYK 289 (291)
T ss_pred HHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhcCCCcC
Confidence 56789999999999999999999999999999999999999999998753
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=372.43 Aligned_cols=235 Identities=34% Similarity=0.523 Sum_probs=226.0
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 305 ~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.+++++|+|||+|.||.+||.+++.+|++|++||++++.++++.+++.+.+++++++|.++..+....++++++++++++
T Consensus 2 ~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 2 SDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred CCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhC-CCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~-~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~ 463 (539)
+++||+||||+||+.++|+.+|+++.+++ ++++|++||||+++++.++....+|+|++|+|||+|++.++++|++++..
T Consensus 82 ~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~ 161 (286)
T PRK07819 82 FADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLV 161 (286)
T ss_pred hCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCC
Confidence 99999999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHH-HcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 464 TSAQVILDLMTVGK-IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 464 t~~e~~~~~~~l~~-~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
|++++++++.+++. .+|+.|++++|.|||++||++.++++|+++++++|+ +++|||+++ .++|||+|||+++|.++
T Consensus 162 T~~~~~~~~~~~~~~~lgk~pv~v~d~pGfi~nRi~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p~Gpf~~~D~~G 240 (286)
T PRK07819 162 TSEATVARAEEFASDVLGKQVVRAQDRSGFVVNALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAHPMGPLRLSDLVG 240 (286)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEecCCCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhc
Confidence 99999999999988 599999999999999999999999999999999997 999999999 78999999999999764
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=384.76 Aligned_cols=250 Identities=21% Similarity=0.316 Sum_probs=211.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc---
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV--- 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~--- 79 (539)
..|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||+|.|++||+|+|++++.........
T Consensus 37 ~~V~~e~-~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 37 YQVLVEG-SGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4578888 7899999999996 6999999999999999999999999999999999999999999998643211111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.....+++ .+|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. ++
T Consensus 116 ~~~~~~~~~l~-~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a 193 (401)
T PLN02157 116 REFFSSLYSFI-YLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LG 193 (401)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HH
Confidence 11111122344 56899999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|++||++++|+||+++||||++||++++ +++.+++.+++..+|.+++
T Consensus 194 ~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~------------------------------ 242 (401)
T PLN02157 194 EYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVE------------------------------ 242 (401)
T ss_pred HHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHH------------------------------
Confidence 999999999999999999999999999998 6777999999887764332
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHH---HhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF---FAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af---~~kr~~~~ 294 (539)
.+|+.++.. ..+....+..|...+..++.++|.+|++.+| .+||++.+
T Consensus 243 ------~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al~~~~~kr~~~w 293 (401)
T PLN02157 243 ------SCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLEIEAGRRKDTW 293 (401)
T ss_pred ------HHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHHHhhhcccchHH
Confidence 334455443 2345677888899999999999999999999 66666554
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=372.53 Aligned_cols=230 Identities=23% Similarity=0.308 Sum_probs=213.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+.+++|+|||+|.||++||..|+.+|++|++||++++.++.+.+.+.+.+..+.+.+. ... ...+++++++++ ++
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~-~~~---~~~~~i~~~~~l~~a 80 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGL-APG---ASPARLRFVATIEAC 80 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC-Chh---hHHhhceecCCHHHH
Confidence 4578999999999999999999999999999999999999988888888888887763 322 233678888888 67
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++||+||||+||+.++|+.+|+++.+++++++||.||||++++++++..+.+|+|++|+||||||+.+++|||++++.|
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCC---cchhhccccC
Q 009256 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQEGGCW 538 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~---~Gpf~~~d~~ 538 (539)
++++++++..|++.+|+.||++ +|.|||++||++.++++||++++++|+ +++|||++| .++|+| +|||+++|..
T Consensus 161 ~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~ 240 (321)
T PRK07066 161 APEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLA 240 (321)
T ss_pred CHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhc
Confidence 9999999999999999999999 799999999999999999999999996 999999999 699997 9999999975
Q ss_pred C
Q 009256 539 S 539 (539)
Q Consensus 539 ~ 539 (539)
+
T Consensus 241 G 241 (321)
T PRK07066 241 G 241 (321)
T ss_pred C
Confidence 3
|
|
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=344.48 Aligned_cols=234 Identities=32% Similarity=0.547 Sum_probs=221.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHH-----HHHhhcccccC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-----NNALKMLKGVL 380 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~ 380 (539)
..++.|+|||+|.||+.||...+..|++|+++|.|+..+.++.+.|.+.+....+++..+.... +..+.++..++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 4578899999999999999999999999999999999999999999999888888877664443 66778999999
Q ss_pred Cc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee
Q 009256 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 459 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~ 459 (539)
+. ++++++|+|||++-|+.++|+.+|++|...+++++|+++|||++.+++++..+++|.||.|+|||||+..++++|++
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVi 168 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVI 168 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhh
Confidence 98 78899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhcccc
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGC 537 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~ 537 (539)
.++.|++|+++.+..|.+.+|+.+|-++|.|||++||++.+|++||+++++.|. +.+|||.+| -|.||||||||++|.
T Consensus 169 r~~~TS~eTf~~l~~f~k~~gKttVackDtpGFIVNRlLiPyl~ea~r~yerGdAskeDIDtaMklGagyPMGPfEL~Dy 248 (298)
T KOG2304|consen 169 RTDDTSDETFNALVDFGKAVGKTTVACKDTPGFIVNRLLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYPMGPFELADY 248 (298)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCceeecCCCchhhhHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999995 999999999 799999999999997
Q ss_pred CC
Q 009256 538 WS 539 (539)
Q Consensus 538 ~~ 539 (539)
++
T Consensus 249 vG 250 (298)
T KOG2304|consen 249 VG 250 (298)
T ss_pred hh
Confidence 53
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=358.71 Aligned_cols=205 Identities=29% Similarity=0.460 Sum_probs=183.1
Q ss_pred CCcEEEEEe----cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 3 APRVTMEVG----NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 3 ~~~v~~~~~----~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
+++|.++.. +++|++||||||+.|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~~~~~~~i~~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~- 80 (222)
T PRK05869 2 NEFVNVVVSDGSQDAGLATLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQE- 80 (222)
T ss_pred ccchhhhcccCcccCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhh-
Confidence 356666662 478999999999889999999999999999999999999999999999999999999876432211
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
........++++ +++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 81 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~ 159 (222)
T PRK05869 81 ADTAARVRQQAV-DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSR 159 (222)
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHH
Confidence 111223344566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
|++++++|++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 210 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA 210 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999886543
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=369.02 Aligned_cols=238 Identities=26% Similarity=0.321 Sum_probs=203.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC---
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA--- 76 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~--- 76 (539)
|+++.+.++. +++|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 ~~~~~v~~~~-~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~ 79 (288)
T PRK08290 1 MEYEYVRYEV-AGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPG 79 (288)
T ss_pred CCCceEEEEe-eCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccc
Confidence 8999999999 8999999999996 6999999999999999999999999999999999999999999987421110
Q ss_pred --------------Cccc-cc---chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccC
Q 009256 77 --------------GDVS-LM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (539)
Q Consensus 77 --------------~~~~-~~---~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~ 138 (539)
.... .+ ...+.+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~l 158 (288)
T PRK08290 80 PDQHPTLWWDGATKPGVEQRYAREWEVYLGMC-RRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRM 158 (288)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCccccc
Confidence 0000 01 11223444 56899999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccC
Q 009256 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (539)
Q Consensus 139 Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~ 218 (539)
|+ |+ .+++++++++|+.+|++|++||++++|+||+++||||+|||++++.+++.+++++|++.|+.+++
T Consensus 159 Gl-~~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------- 227 (288)
T PRK08290 159 GI-PG-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLR--------- 227 (288)
T ss_pred Cc-Cc-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH---------
Confidence 98 54 45777899999999999999999999999999999999999999999999999999999875443
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHh-CCHH
Q 009256 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELV-MLDT 278 (539)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~e~~~~~~~~-~s~~ 278 (539)
.+|+.++..... +++++++.|...+...+ ++++
T Consensus 228 ---------------------------~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (288)
T PRK08290 228 ---------------------------LTKRAVNQTLDAQGFRAALDAVFDLHQLGHAHNAE 262 (288)
T ss_pred ---------------------------HHHHHHHHHHhhccHHHHHHHHHHHHHHccccchh
Confidence 346677766654 68899999998888877 6665
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-45 Score=371.89 Aligned_cols=292 Identities=20% Similarity=0.285 Sum_probs=230.3
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc-
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV- 79 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~- 79 (539)
+...|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++.........
T Consensus 7 ~~~~v~~~~-~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~ 85 (381)
T PLN02988 7 SQSQVLVEE-KSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWR 85 (381)
T ss_pred cCCceEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchh
Confidence 345688888 7999999999997 6999999999999999999999999999999999999999999987532111110
Q ss_pred --cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 80 --SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 80 --~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
..+......+. ..|.++|||+||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 86 ~~~~~f~~~~~l~-~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~- 163 (381)
T PLN02988 86 LGANFFSDEYMLN-YVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF- 163 (381)
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-
Confidence 01111111233 56899999999999999999999999999999999999999999999999999999999999996
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcc---cc------------------
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT---DK------------------ 216 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~---~~------------------ 216 (539)
.+++|++||++++|+||+++||||++||++++.+.+.+++ +++..+|..++..++. ..
T Consensus 164 ~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f 242 (381)
T PLN02988 164 FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQHPRLKPQSAYHRLDVIDRCF 242 (381)
T ss_pred HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHh
Confidence 6999999999999999999999999999999999998888 6666655443322111 00
Q ss_pred -cCChHHHHHHHH---------HHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhC---CHHHHhH
Q 009256 217 -LGSLSEAREVLK---------LARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVM---LDTSRGL 282 (539)
Q Consensus 217 -~~~~~~~~~~~~---------~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~---s~~~~~~ 282 (539)
.+++.+..+.++ +++...+ -......+...+.+.++++...++.+.+..|...-..++. ++||.||
T Consensus 243 ~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EG 322 (381)
T PLN02988 243 SRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKDFVEG 322 (381)
T ss_pred CCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 012222222222 1222122 2233444667888999999999999999999999999998 6999999
Q ss_pred HHHHHh-h-hhccCCCC
Q 009256 283 VHVFFA-Q-RATSKVPN 297 (539)
Q Consensus 283 ~~af~~-k-r~~~~~~~ 297 (539)
|+|-+- | +.|+|.|.
T Consensus 323 VRA~LiDKd~~P~W~p~ 339 (381)
T PLN02988 323 CRAILVDKDKNPKWEPR 339 (381)
T ss_pred HHHHhcCCCCCCCCCCC
Confidence 999865 4 56777663
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=355.52 Aligned_cols=244 Identities=23% Similarity=0.261 Sum_probs=197.1
Q ss_pred EEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEecC-CCCcccCCCchhhhhhcCCCc
Q 009256 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~-----d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|.++. +++|++|||| | +.|+||.+|+.+|.++++++++ |+++|+|||||. |++||+|+|++++........
T Consensus 19 i~~e~-~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~ 96 (287)
T PRK08788 19 VYYEE-ERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGD 96 (287)
T ss_pred EEEEc-cCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccc
Confidence 34454 6899999996 7 5799999999999999999998 899999999999 799999999998753211111
Q ss_pred ccccchH---HHHHHHHHHH---hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhcccc
Q 009256 79 VSLMPDV---SVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR 152 (539)
Q Consensus 79 ~~~~~~~---~~~~~~~~i~---~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 152 (539)
...+... ..+.+ .++. ++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 97 ~~~~~~~~~~~~~~~-~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~ 175 (287)
T PRK08788 97 RDALLAYARACVDGV-HAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLAR 175 (287)
T ss_pred hHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHH
Confidence 1111111 11222 2233 799999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHH
Q 009256 153 LVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (539)
Q Consensus 153 ~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (539)
++|+.+|++|++||++++|+||++|||||+++|++++.+++.+++++|+.. |.+..
T Consensus 176 ~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~----------------------- 231 (287)
T PRK08788 176 RVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWR----------------------- 231 (287)
T ss_pred HhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999976 32221
Q ss_pred HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHH-HHhHHHHHHhh
Q 009256 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDT-SRGLVHVFFAQ 289 (539)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~-~~~~~~af~~k 289 (539)
+.|+..+.....++++.++.|...+..++++.+ .++-|..|..-
T Consensus 232 -------------a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (287)
T PRK08788 232 -------------AMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLVRA 276 (287)
T ss_pred -------------HHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 122333333445678888888888777666665 46777777643
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=350.44 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=179.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
|+ +.+.++. +++|++||||||+.|++|.+|+++|.++++.++ +++|+||+||.|++||+|+|++++... .....
T Consensus 1 ~~-~~i~~~~-~~~v~~itln~~~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~--~~~~~ 74 (229)
T PRK06213 1 MS-ELVSYTL-EDGVATITLDDGKVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG--AQAAI 74 (229)
T ss_pred Cc-ceEEEEe-cCCEEEEEeCCCCCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc--hHhHH
Confidence 54 5688888 789999999999889999999999999999988 567999999999999999999987542 11111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.+.....+++ +++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+++++.++++++|..++
T Consensus 75 ~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a 153 (229)
T PRK06213 75 ALLTAGSTLA-RRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAF 153 (229)
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHH
Confidence 2223344566 6799999999999999999999999999999999999 9999999999999888888889999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
++++++|++++|+||+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 154 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 203 (229)
T PRK06213 154 QRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHA 203 (229)
T ss_pred HHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999876543
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=360.43 Aligned_cols=203 Identities=26% Similarity=0.344 Sum_probs=176.7
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC---
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--- 77 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~--- 77 (539)
+++++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 8 ~~~~v~~e~-~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~ 86 (302)
T PRK08272 8 NLKTMTYEV-TGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGG 86 (302)
T ss_pred CCCeEEEEe-ECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccc
Confidence 467899999 7899999999996 69999999999999999999999999999999999999999999886432110
Q ss_pred c----------------cc-----ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcc
Q 009256 78 D----------------VS-----LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL 136 (539)
Q Consensus 78 ~----------------~~-----~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~ 136 (539)
. .. .+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~ 165 (302)
T PRK08272 87 GAYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGF-MSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPT 165 (302)
T ss_pred cccccccccccccccccccchhhHHHHHHHHHHH-HHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcch
Confidence 0 00 0011233455 568999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 137 TLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 137 ~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
++|.+|+. .++++++|.++|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 166 ~~gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~ 235 (302)
T PRK08272 166 RVWGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLA 235 (302)
T ss_pred hcccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98666643 35788999999999999999999999999999999999999999999999999999987654
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=376.78 Aligned_cols=233 Identities=36% Similarity=0.554 Sum_probs=224.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+++||+|||+|.||.+||.+++++||+|++||++++.++++.+++++.++.++++|.++.++.+..+++++.++++++++
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~ 83 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA 83 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||||+||+.++|+.+|+++..++++++||+||||++++++++..+.+|+|++|+|||+|++.++++|+++++.|++
T Consensus 84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~ 163 (503)
T TIGR02279 84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAA 163 (503)
T ss_pred CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++.++++.+|+.|+++++.+||++||++.++++|++.++++| +++++||+++ .++|||||||+++|.++
T Consensus 164 e~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~~mGPf~l~D~~G 238 (503)
T TIGR02279 164 EVAEQLYETALAWGKQPVHCHSTPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALRDGAGFPMGPFELTDLIG 238 (503)
T ss_pred HHHHHHHHHHHHcCCeeeEeCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999997 6999999999 67999999999999764
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=359.80 Aligned_cols=286 Identities=22% Similarity=0.255 Sum_probs=224.6
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC---cc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---DV 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---~~ 79 (539)
+.|.++. .+++++||||||+ .|+||.+|+.+|.++++.++.|+++++|||+|.|++||+|+|++++....... ..
T Consensus 42 ~~v~~e~-~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 120 (407)
T PLN02851 42 DQVLVEG-RAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEEC 120 (407)
T ss_pred CCeEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 4577888 7899999999996 69999999999999999999999999999999999999999999986532111 11
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+.....++. ..|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|. .+
T Consensus 121 ~~~f~~~~~l~-~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~-~g 198 (407)
T PLN02851 121 KLFFENLYKFV-YLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGY-LG 198 (407)
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCH-HH
Confidence 11222233444 56889999999999999999999999999999999999999999999999999999999999997 59
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhh-------------------------hhcc
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRS-------------------------LHRT 214 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~-------------------------~~~~ 214 (539)
++|++||++++|+||+++||+|++||.+++ +.+.+.+.++...++..+.. ++..
T Consensus 199 ~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~ 277 (407)
T PLN02851 199 EYLALTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGH 277 (407)
T ss_pred HHHHHhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHHHHHHHHhccccCCCcccHHHHHHHHHHHhCC
Confidence 999999999999999999999999999988 56666666554443322221 1111
Q ss_pred cccCChHHHHHHHH---------HHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHh---CCHHHHh
Q 009256 215 DKLGSLSEAREVLK---------LARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELV---MLDTSRG 281 (539)
Q Consensus 215 ~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~---~s~~~~~ 281 (539)
+++.+..+.++ +++...+ -......+...+.+.++++...++++.++.|...-..++ .++|+.|
T Consensus 278 ---~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~~~~sl~e~l~~E~~l~~~~~~~~~~~DF~E 354 (407)
T PLN02851 278 ---DTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQCLAREYRISLCGVSKWVSGDFCE 354 (407)
T ss_pred ---CCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 12222222222 2222222 223444566778899999999999999999999999887 4899999
Q ss_pred HHHHHHh--hhhccCCC
Q 009256 282 LVHVFFA--QRATSKVP 296 (539)
Q Consensus 282 ~~~af~~--kr~~~~~~ 296 (539)
||+|-+- .++|+|.|
T Consensus 355 GVRA~LIDKd~~P~W~p 371 (407)
T PLN02851 355 GVRARLVDKDFAPKWDP 371 (407)
T ss_pred HHHHHhcCCCCCCCCCC
Confidence 9999875 34677765
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=373.67 Aligned_cols=235 Identities=34% Similarity=0.526 Sum_probs=226.5
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 305 PRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 305 ~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.+.+++|+|||+|.||.+||.+++++|++|++||++++.++++.+++++.+++++++|.++.++.+..++++++++++++
T Consensus 4 ~~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 4 LPSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++||+||||+||+.++|+.+|+++...+++++|++||||++++++++..+.+|+|++|+|||+|++.++++|++++..|
T Consensus 84 ~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~T 163 (507)
T PRK08268 84 LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLAT 163 (507)
T ss_pred hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++++.++++.+|+.|+++++.+||++||++.++++|++.++++| +++++||+++ .++|||||||+++|.++
T Consensus 164 s~~~~~~~~~l~~~lgk~pv~v~d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~mGPf~l~D~~G 240 (507)
T PRK08268 164 DPAVADALYALARAWGKTPVRAKDTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILREAAGFRMGPFELMDLIG 240 (507)
T ss_pred CHHHHHHHHHHHHHcCCceEEecCCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999997 5999999999 67999999999999764
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=345.39 Aligned_cols=191 Identities=25% Similarity=0.354 Sum_probs=170.1
Q ss_pred EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcC--CCcccccchHHHHHH
Q 009256 15 VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG--AGDVSLMPDVSVELV 90 (539)
Q Consensus 15 v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~--~~~~~~~~~~~~~~~ 90 (539)
+++||||||+ +|++|.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++.+... ......+....++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~ 117 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMV 117 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHH
Confidence 5669999996 6999999999999999999999999999999999 69999999998865321 111112223334555
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
+++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|++++++|++++
T Consensus 118 -~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 118 -SAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred -HHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcceecCcchH------------HHHHHHHHHHHHhcCch
Q 009256 171 SEEGWKLGLIDAVVTSEEL------------LKVSRLWALDIAARRKP 206 (539)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l------------~~~a~~~a~~la~~~~~ 206 (539)
|+||+++||||+|||+.++ ++.+.++++.+...++.
T Consensus 197 A~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 244 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKA 244 (360)
T ss_pred HHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcc
Confidence 9999999999999999998 88888999888888765
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=320.24 Aligned_cols=256 Identities=24% Similarity=0.342 Sum_probs=221.9
Q ss_pred CCcEEEEE--ecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC----
Q 009256 3 APRVTMEV--GNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---- 75 (539)
Q Consensus 3 ~~~v~~~~--~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~---- 75 (539)
|+.+.+.+ .+..|.++.|||| +.|++|..|+.|+.++++.+.+||++|+|||+|+|++||+|+|+..+.....
T Consensus 18 ~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~ 97 (292)
T KOG1681|consen 18 YKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPE 97 (292)
T ss_pred cceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccc
Confidence 55555553 2457999999999 5799999999999999999999999999999999999999999887754311
Q ss_pred CCcc-------cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh
Q 009256 76 AGDV-------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ 148 (539)
Q Consensus 76 ~~~~-------~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~ 148 (539)
..+. ..+...+++.+ ..|++||||||++|||+|+|||+.|.-+||+|+|+++|.|..-|+.+|+..+.|..+
T Consensus 98 ~dd~aR~g~~lrr~Ik~~Q~~~-t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~ 176 (292)
T KOG1681|consen 98 GDDVARKGRSLRRIIKRYQDTF-TAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLN 176 (292)
T ss_pred cchHhhhhHHHHHHHHHHHHHH-HHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHh
Confidence 1111 12233345556 679999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC-HHHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHH
Q 009256 149 RLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREV 226 (539)
Q Consensus 149 ~l~r~vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (539)
|||..|| .+.++++.+|++.++|.||++.|||++|+|+ +++.+.+..+|+.|+..+|.+++
T Consensus 177 RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVq----------------- 239 (292)
T KOG1681|consen 177 RLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQ----------------- 239 (292)
T ss_pred hhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeee-----------------
Confidence 9999999 8999999999999999999999999999976 67899999999999999986553
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 227 LKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 227 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.+.+++.+++|..-...-...+.|+|..+.+.+-++|+++..+
T Consensus 240 -------------------gTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~k~~tf 289 (292)
T KOG1681|consen 240 -------------------GTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKLKTVTF 289 (292)
T ss_pred -------------------chHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Confidence 34678888888999999988877777788899999999999998876644
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=344.88 Aligned_cols=233 Identities=29% Similarity=0.394 Sum_probs=218.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHH-HHHHhhcccccCCc-cC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK-ANNALKMLKGVLDY-SE 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~-~~ 384 (539)
.++||+|||+|.||.+||..++.+|++|++||++++.++++.+.+.+.+..+.+.+.++..+ .+...++++.++++ ++
T Consensus 2 ~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 2 DIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred CccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 36799999999999999999999999999999999999999888888888888888887766 66667888888888 57
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++||+||+|+|++.++|+.+++++.++++++++|++++|++++++++..+.+|+|++|+||++|++.++++|+++++.|
T Consensus 82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t 161 (287)
T PRK08293 82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGT 161 (287)
T ss_pred hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++++.++++.+|+.|+++ +|.|||++||++.++++||+.++++|+ +++|||+++ .++|+|+|||+++|..+
T Consensus 162 ~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~~Gp~~~~D~~G 239 (287)
T PRK08293 162 DPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALALWAKGVADPETIDKTWMIATGAPMGPFGILDIVG 239 (287)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCcCHHHHHHHhc
Confidence 9999999999999999999998 599999999999999999999999996 999999999 89999999999999864
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=341.94 Aligned_cols=233 Identities=36% Similarity=0.595 Sum_probs=222.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.|+||+|||+|.||.+||..++++|++|++||++++.++...+++++.++...+.|.++.........+++++++++.++
T Consensus 2 ~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~ 81 (282)
T PRK05808 2 GIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK 81 (282)
T ss_pred CccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence 36799999999999999999999999999999999999999888999999999999888888777778888888887799
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++..+|+.+++++.++++++++|+|++|+++++.++..+.+|+|++++||++|++.++++|+++++.|++
T Consensus 82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~ 161 (282)
T PRK05808 82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSD 161 (282)
T ss_pred cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
+.++.+.++++.+|+.|++++|.|||+.||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.++
T Consensus 162 e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p~Gp~~~~D~~G 236 (282)
T PRK05808 162 ATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNHPIGPLALADLIG 236 (282)
T ss_pred HHHHHHHHHHHHcCCeeEEecCccChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999997 999999999 69999999999999763
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=342.41 Aligned_cols=233 Identities=33% Similarity=0.569 Sum_probs=217.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHH---HHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA---NVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
++++|+|||+|.||.+||..++++|++|++||++++.++.+.+++++ .+...++.+.++..+.+....++..+++++
T Consensus 2 ~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 2 DIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred CCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 46899999999999999999999999999999999999988777655 356677788888887777778888888877
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~ 463 (539)
++++||+||+|+|++.++|+.+++++.++++++++++|++|++++++++..+.+|+|++|+||++|++.++++|+++++.
T Consensus 82 ~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~ 161 (291)
T PRK06035 82 SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAAL 161 (291)
T ss_pred HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
|++++++++.++++.+|+.|++++|.|||++||++.++++||+.++++|+ +++|||+++ .++|+|+|||+++|.++
T Consensus 162 T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~~Gp~~~~D~~G 239 (291)
T PRK06035 162 TSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGWLLEAIRSFEIGIATIKDIDEMCKLAFGFPMGPFELMDIIG 239 (291)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcCCCccCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999997 999999999 79999999999999763
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=341.10 Aligned_cols=232 Identities=33% Similarity=0.493 Sum_probs=219.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+++...+...++.+.++..+.+....+++.++++ +.++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 468999999999999999999999999999999999999988888777888888888888888788888888888 6899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++|+.+++++.+++++++++++++|++++++++..+.++.+++|+||++|++.++++|+++++.|++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~ 160 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSD 160 (288)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
+++++++++++.+|+.|++++|.|||++||+++++++||+.++++|+ +++|||.++ .++|||+|||+++|.++
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nRl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~p~Gp~~~~D~~G 235 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEFPGFVTSRISALVGNEAFYMLQEGVATAEDIDKAIRLGLNFPMGPLELGDLVG 235 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999996 999999999 69999999999999864
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=331.70 Aligned_cols=199 Identities=24% Similarity=0.294 Sum_probs=170.4
Q ss_pred EEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCcccCCCchhhhhhcCCC-cccccc
Q 009256 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVK-AIVLTGNGGRFSGGFDINVFQKVHGAG-DVSLMP 83 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~-~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~ 83 (539)
++++. +++|++|+||||+.|+||.+|+++|.+++++++.|++++ +||++|.|++||+|+|++++....... ....+.
T Consensus 2 ~~~~~-~~~v~~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 80 (239)
T PLN02267 2 CTLEK-RGNLFILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMV 80 (239)
T ss_pred ceeEe-cCCEEEEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHH
Confidence 56777 789999999999889999999999999999999998875 777799999999999999875321111 111122
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEee-CCceEeCCcccCCCCCCcchhhccccccCHHHH-HH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA-IE 161 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a-~~ 161 (539)
..+.+++ .++.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+++++++|++++|..++ ++
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~ 159 (239)
T PLN02267 81 AKLRPLV-ADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRD 159 (239)
T ss_pred HHHHHHH-HHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHH
Confidence 3344566 67999999999999999999999999999999998 568999999999997334458899999999999 69
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCch
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKP 206 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~ 206 (539)
++++|++++|+||+++||||+|+|+ +++.+++.++|++|++.+++
T Consensus 160 llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~ 205 (239)
T PLN02267 160 VLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWN 205 (239)
T ss_pred HHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCc
Confidence 9999999999999999999999985 68999999999999998653
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=308.73 Aligned_cols=252 Identities=29% Similarity=0.394 Sum_probs=205.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--C-CCcccCCCchhhhhh---cC
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--G-GRFSGGFDINVFQKV---HG 75 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~--g-~~F~aG~Dl~~~~~~---~~ 75 (539)
|..|.++...++|+.||||||+ +|++.+..+.||.++|..+..|++|.||+|||. | ++||+|+|-+-.... ..
T Consensus 17 y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 17 YEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred cceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 5668888833899999999996 799999999999999999999999999999985 3 689999998765431 11
Q ss_pred CCcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
++....+. ..++. +.|+.+||||||.|+|+|+|||-.|-+.||+.||+++|+|++...++|-+-++.|+..|.|.||
T Consensus 97 d~~~~rLn--vLdlQ-rlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 97 DDGIPRLN--VLDLQ-RLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CccCcccc--hhhHH-HHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 11111111 22444 6789999999999999999999999999999999999999999999999988888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
.++|+|+.+.++.++|+||+++||||.|||.++|++++.+|++++.+.||.+++.+
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~L------------------------ 229 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRML------------------------ 229 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999998765532
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
|.+++.. ..++.-.-+.-..+-...+.|+|.+||..||+|||+|..
T Consensus 230 ------------K~Afnad-~DGlaG~q~~ag~at~L~YmTdEa~EGr~AF~eKR~Pdf 275 (282)
T COG0447 230 ------------KAAFNAD-CDGLAGLQELAGNATLLYYMTDEAQEGRDAFLEKRKPDF 275 (282)
T ss_pred ------------HHHhcCC-CchhhHHHHhcccceEEEEechhhhhhHHHHhhccCCCh
Confidence 2233221 111111111222333446789999999999999999874
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=336.26 Aligned_cols=233 Identities=33% Similarity=0.505 Sum_probs=220.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.++||+|||+|.||.+||..|+++|++|++||++++.++.+.+++...+..+++.+.++..+......+++.++++++++
T Consensus 3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 82 (292)
T PRK07530 3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDLA 82 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHhc
Confidence 46799999999999999999999999999999999999998888888888888889888887777778888888888899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++|+.+++++.+.++++++|+|++|+++++.++..+.+|++++|+||++|++..+++|++++..|++
T Consensus 83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~ 162 (292)
T PRK07530 83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDE 162 (292)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++.++++.+|+.+++++|.|||++||++.++++|++.++++|+ ++++||+++ .++|||+|||+++|.++
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~pg~i~nRl~~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~~GP~~~~D~~G 237 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFPAFIVNRILLPMINEAIYTLYEGVGSVEAIDTAMKLGANHPMGPLELADFIG 237 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcCChHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998 999999999 69999999999999864
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=335.59 Aligned_cols=233 Identities=33% Similarity=0.558 Sum_probs=222.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.++||+|||+|.||.+||..|+.+|++|++||++++.++...+++++.++.+++.|.++.++....+++++++++.++++
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 82 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELR 82 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhC
Confidence 46799999999999999999999999999999999999999999999999999999999888888888888888888899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+||++++|+.+++++.++++++++|+|++|++++++++..+.++.+++|+||++||+.++++|+++++.|++
T Consensus 83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++.++++++.+|+.++++++.+||++||++.++++|+++++++|+ +++|||.++ .++|||+|||+++|.++
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d~~g~i~nri~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~~Gp~~~~D~~G 237 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQDYPGFIVNRILMPMINEAFYALYTGVASKEDIDTGMKLGTNHPMGPLHLADFIG 237 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999996 999999999 79999999999999764
|
|
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=304.75 Aligned_cols=253 Identities=22% Similarity=0.273 Sum_probs=223.1
Q ss_pred CCCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|.+..+.++. .|++.+|.+| ||+ .|+++.+++.++..+++.+.+|+++..++++|.|++||+|.|+..+......+.
T Consensus 4 ~~~~~~vv~~-~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~ 82 (266)
T KOG0016|consen 4 MRYREIVVTR-ENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDA 82 (266)
T ss_pred ccccceEEEe-cCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcc
Confidence 5567788888 8999999999 996 699999999999999999999999999999999999999999998876443321
Q ss_pred cc---ccchHHH--HHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccc
Q 009256 79 VS---LMPDVSV--ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (539)
Q Consensus 79 ~~---~~~~~~~--~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ 153 (539)
.. ....... ..+.+.+.++|||+||.|||+|+|.|..+.-.||+++|+|+++|..|+.++|.+|++++++.||++
T Consensus 83 ~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~i 162 (266)
T KOG0016|consen 83 NEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKI 162 (266)
T ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHh
Confidence 11 1111111 123477899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHH
Q 009256 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (539)
Q Consensus 154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (539)
+|...|.||++.|++++|+||.+.|||++|+|++++.+.++.-++++++.+|..++
T Consensus 163 mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~------------------------ 218 (266)
T KOG0016|consen 163 MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLL------------------------ 218 (266)
T ss_pred hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHH------------------------
Confidence 99999999999999999999999999999999999999999999999999886554
Q ss_pred HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhh
Q 009256 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (539)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr 290 (539)
.+|++++......+..+.+.|.......|.|+|..+.+.+|+.|.
T Consensus 219 ------------~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 219 ------------GMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred ------------HHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 345667777777788899999999999999999999999998764
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=318.10 Aligned_cols=221 Identities=29% Similarity=0.381 Sum_probs=209.3
Q ss_pred CcHHHHHHHHHCCCeEEEEeCChH-------HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--c-cCCCCc
Q 009256 319 MGSGIATAHILNNIYVVLKEVNSE-------YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--Y-SEFKDV 388 (539)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~-~~~~~a 388 (539)
||.+||..++.+|++|++||++++ .++++.+++.+.++.++++|.++.++.+..+++++++++ . +++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 899999999999999999999995 467788889999999999999999999999999998765 3 678999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHH
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~ 468 (539)
|+||||+||+.++|+.+|+++.+.+++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||++++.|++++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~ 160 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAV 160 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCC---cchhhccccCC
Q 009256 469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQEGGCWS 539 (539)
Q Consensus 469 ~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~---~Gpf~~~d~~~ 539 (539)
+++++++++.+|+.|++++|.+||++||++.++++|++.++++| +++++||+++ .++|+| +|||+++|.++
T Consensus 161 ~~~~~~ll~~lGk~~v~v~d~~Gfi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~G 236 (314)
T PRK08269 161 VDRLAALLERIGKVPVVCGPSPGYIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGG 236 (314)
T ss_pred HHHHHHHHHHcCCcEEEecCCCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhh
Confidence 99999999999999999999999999999999999999999997 5999999999 699999 69999999753
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=337.67 Aligned_cols=201 Identities=22% Similarity=0.326 Sum_probs=174.6
Q ss_pred CCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEecC-CCCcccCCCchh
Q 009256 3 APRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDINV 69 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~~~~~~-~d~~v~~vvl~g~-g~~F~aG~Dl~~ 69 (539)
++++.+++ +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+++
T Consensus 10 ~~~v~~~~-~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~ 88 (546)
T TIGR03222 10 YRHWKLTF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFM 88 (546)
T ss_pred CceEEEEe-eCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHH
Confidence 45788888 789999999996 459999999999999999999 7899999999987 689999999998
Q ss_pred hhhhcCCCcccccchH----HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCccc-CCCCC
Q 009256 70 FQKVHGAGDVSLMPDV----SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP 142 (539)
Q Consensus 70 ~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~p 142 (539)
+....... ...+... ...+. +.+.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|++|
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~i~-~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P 166 (546)
T TIGR03222 89 LGLSTHAW-KVNFCKFTNETRNGIE-DSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLP 166 (546)
T ss_pred Hhccccch-hhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCC
Confidence 75321111 1111111 11233 5578999999999999999999999999999999986 799999997 99999
Q ss_pred Ccchhhccc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch
Q 009256 143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (539)
Q Consensus 143 ~~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (539)
++|++++++ +++|..+|++|+++|++++|+||++|||||+|||++++++++.++|++|++.||.
T Consensus 167 ~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 167 GTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred ccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 999999997 7999999999999999999999999999999999999999999999999998863
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=337.02 Aligned_cols=204 Identities=22% Similarity=0.313 Sum_probs=176.9
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEecC-CCCcccCCCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINP-----------PVNALAIPIVAGLKDKFEEAT-SRDDVKAIVLTGN-GGRFSGGFDI 67 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p-----------~~Nal~~~~~~~l~~~~~~~~-~d~~v~~vvl~g~-g~~F~aG~Dl 67 (539)
|+++++.++. +++|++|||||| +.|++|.+|+.+|.+++++++ .|+++|+|||||. |++||+|+|+
T Consensus 12 ~~~~~~~~e~-~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 12 SQYRHWKLSF-DGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCceEEEEe-eCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 5678899999 799999999954 459999999999999999998 7899999999997 4899999999
Q ss_pred hhhhhhcCCCcccccchHH---HHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCccc-CCCC
Q 009256 68 NVFQKVHGAGDVSLMPDVS---VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVI 141 (539)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~ 141 (539)
+++....... ...+.... ...+.+.+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875421111 01111111 112225678999999999999999999999999999999987 899999997 9999
Q ss_pred CCcchhhccc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch
Q 009256 142 PGFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP 206 (539)
Q Consensus 142 p~~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (539)
|++|++++|+ +++|..+|+++++||++++|+||+++||||+|||++++.+++.+++++|+..||.
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~ 236 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDR 236 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998 7899999999999999999999999999999999999999999999999999864
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=297.26 Aligned_cols=192 Identities=44% Similarity=0.704 Sum_probs=174.9
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc-ccccc
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-VSLMP 83 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-~~~~~ 83 (539)
+.++. +++|++|+||+|+ .|++|.+|+++|.++++.++.|+++++|||||.|+.||+|.|++++........ ...+.
T Consensus 1 i~~~~-~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~ 79 (195)
T cd06558 1 VLVER-DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFI 79 (195)
T ss_pred CEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHH
Confidence 35677 6899999999997 799999999999999999999999999999999999999999999876543221 22344
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (539)
....+++ +++.++|||+||++||+|+|+|++++++||+||++++++|++||+++|++|+.|++++|++++|.+++++++
T Consensus 80 ~~~~~~~-~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 80 RELQELL-RALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 5556667 779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHH
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (539)
++|++++++||+++||||++++.+++.+++.+++++
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999876
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=277.29 Aligned_cols=245 Identities=23% Similarity=0.349 Sum_probs=208.5
Q ss_pred cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 12 NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 12 ~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+++|-.|+||+|+ .|.++..|+.+|.+.+....+..++|+|||+..|+.||+|.||+|+...+..+.....+....+++
T Consensus 39 ~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvm 118 (287)
T KOG1682|consen 39 HNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVM 118 (287)
T ss_pred ccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHHHHHHHHHHH
Confidence 6899999999996 699999999999999998888889999999999999999999999987654443344455556677
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
+-|+++|+||||-|||+|..+||.|...||++||+++++|..|..++|++-..-|. -|.|.+++..|.+|++||.+|+
T Consensus 119 -n~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~ 196 (287)
T KOG1682|consen 119 -NDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPIT 196 (287)
T ss_pred -HHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCc
Confidence 56999999999999999999999999999999999999999999999997544443 3889999999999999999999
Q ss_pred HHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHHHHHHH
Q 009256 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDV 250 (539)
Q Consensus 171 a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 250 (539)
++||+.-|||++|||++++..++.+++.+|-..+...+. ..| +-
T Consensus 197 ~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~s------------lgk------------------------~f 240 (287)
T KOG1682|consen 197 GEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVIS------------LGK------------------------EF 240 (287)
T ss_pred hHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHH------------HHH------------------------HH
Confidence 999999999999999999999999999999887754321 122 22
Q ss_pred HHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 251 IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 251 ~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+....++-.+++..-.+.+.+.++-.|.+|||.+|++||.|.|
T Consensus 241 ~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~krp~~~ 284 (287)
T KOG1682|consen 241 YYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKRPPNW 284 (287)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccCCCCc
Confidence 22233344456666777778888999999999999999998875
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=302.46 Aligned_cols=231 Identities=26% Similarity=0.363 Sum_probs=216.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|++|+|||+|.||++||..|+++|++|++||++++.++.+.++++..+..+.+.|.++........++++.++++ ++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 568999999999999999999999999999999999999998888888888899988877777777888888888 5789
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++++.+++++.+.+++++++.|++++.++..++..+.++.++++.||++|++..+++|++++..|++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~ 161 (308)
T PRK06129 82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAP 161 (308)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCH
Confidence 99999999999999999999999999999999999999999999999898999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCC---cchhhccccC
Q 009256 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQEGGCW 538 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~---~Gpf~~~d~~ 538 (539)
+++++++++++.+|+.++++ ++.+||++||++.++++||+.++++| +|+++||+++ .++|++ +|||++.|.+
T Consensus 162 ~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~ 239 (308)
T PRK06129 162 ATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLN 239 (308)
T ss_pred HHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcc
Confidence 99999999999999999999 58999999999999999999999996 6999999999 789987 8999999975
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=274.08 Aligned_cols=180 Identities=40% Similarity=0.620 Sum_probs=161.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
||+|||+|.||.+||..++.+|++|++||++++.++.+.+++++.++.+++++.+++++....+++++++++++++.+||
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~ad 80 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVDAD 80 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCTES
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999997777999
Q ss_pred EEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHH
Q 009256 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVI 469 (539)
Q Consensus 390 lVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~ 469 (539)
+|||++||+.++|+++|++|.+++++++||+||||++++++++..+.+|+|++|+|||+||+.++++||++++.|+++++
T Consensus 81 lViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~ 160 (180)
T PF02737_consen 81 LVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETV 160 (180)
T ss_dssp EEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHH
T ss_pred eehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceeEEEcCc
Q 009256 470 LDLMTVGKIIKKVPVVVGNC 489 (539)
Q Consensus 470 ~~~~~l~~~lg~~~v~v~~~ 489 (539)
+++..|++.+|+.|++++|.
T Consensus 161 ~~~~~~~~~~gk~pv~v~D~ 180 (180)
T PF02737_consen 161 DRVRALLRSLGKTPVVVKDT 180 (180)
T ss_dssp HHHHHHHHHTT-EEEEEES-
T ss_pred HHHHHHHHHCCCEEEEecCC
Confidence 99999999999999999873
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=285.97 Aligned_cols=228 Identities=32% Similarity=0.522 Sum_probs=199.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+.+........+.+. .....++++.++++ +.+
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~ 77 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGI-----ASAGMGRIRMEAGLAAAV 77 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhccc-----HHHHhhceEEeCCHHHHh
Confidence 478999999999999999999999999999999999988887655433322222111 00223456666777 568
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCc
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~ 465 (539)
++||+||+|+|++.+.++.+++++.+.++++++|+|+++++++++++..+.++.+++++||++|++.++++++++++.|+
T Consensus 78 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~ 157 (311)
T PRK06130 78 SGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTS 157 (311)
T ss_pred ccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCceeEEEc-CcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCC---cchhhccccCC
Q 009256 466 AQVILDLMTVGKIIKKVPVVVG-NCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQEGGCWS 539 (539)
Q Consensus 466 ~e~~~~~~~l~~~lg~~~v~v~-~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~---~Gpf~~~d~~~ 539 (539)
++.++.+.++++.+|+.+++++ +.+||++||++.++++|++.++++| ++++++|+++ .++||| +|||+++|..+
T Consensus 158 ~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~G 237 (311)
T PRK06130 158 PQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNG 237 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhc
Confidence 9999999999999999999995 8899999999999999999999996 6999999999 799998 79999999764
|
|
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=274.57 Aligned_cols=290 Identities=23% Similarity=0.301 Sum_probs=224.4
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCc---
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGD--- 78 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~--- 78 (539)
..|.++. .+....||||||+ .||||.+|...+...+..++.++.+++||+.|. |++||+|+|++.......+..
T Consensus 38 ~~VL~e~-~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~ 116 (401)
T KOG1684|consen 38 DQVLVEG-KGCARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPE 116 (401)
T ss_pred CceEEec-CCceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchH
Confidence 4578888 7899999999997 699999999999999999999999999999887 689999999986654332222
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...++..-..+. ..|.++.||.||.++|..+|||++|+.+.-||||+|++.|.+||+.+|++|+.|++++|+|+.| ..
T Consensus 117 ~~~fF~~eYsl~-~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~l 194 (401)
T KOG1684|consen 117 VKKFFTEEYSLN-HLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YL 194 (401)
T ss_pred HHHHHHHHHHHH-HHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HH
Confidence 222333333444 5689999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchh-------------------------hhhhhc
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW-------------------------IRSLHR 213 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~-------------------------~~~~~~ 213 (539)
..++.|||+++++.+|+..||.++-||.+++..--.++...+...|... +..++-
T Consensus 195 g~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs 274 (401)
T KOG1684|consen 195 GLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVINETLEKYASPAKDESFSLSLKLDVINKCFS 274 (401)
T ss_pred HHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHHHHHHHhcccCCCccccchhhHHHHHHhhc
Confidence 9999999999999999999999999998776443334432222222111 112222
Q ss_pred ccccCChHHHHHHHH-------HHHHHHHH-hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHH
Q 009256 214 TDKLGSLSEAREVLK-------LARLQAKK-TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHV 285 (539)
Q Consensus 214 ~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~a 285 (539)
.+....+.++++.++ ++..+.+. ......+.+.+.+.+.++...++++.+-+|.+.-...+.+.||.||++|
T Consensus 275 ~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~egs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA 354 (401)
T KOG1684|consen 275 ANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIREGSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRA 354 (401)
T ss_pred cccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 222222333222222 23333232 2245557788899999999999999999999999999999999999999
Q ss_pred HHh--hhhccCCC
Q 009256 286 FFA--QRATSKVP 296 (539)
Q Consensus 286 f~~--kr~~~~~~ 296 (539)
-|- .++|+|.|
T Consensus 355 ~LIDKd~~PKW~p 367 (401)
T KOG1684|consen 355 VLIDKDQNPKWDP 367 (401)
T ss_pred eeecCCcCCCCCC
Confidence 763 35677755
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=300.87 Aligned_cols=227 Identities=26% Similarity=0.331 Sum_probs=196.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++||+|||+|+||++||..|+++|++|++||+++++.+.+.+.+....... . .+... .....+++++++++ ++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~-~--~l~~~-~~~~~g~i~~~~~~~ea~~ 79 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAY-A--MLTDA-PLPPEGRLTFCASLAEAVA 79 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHH-h--hhccc-hhhhhhceEeeCCHHHHhc
Confidence 568999999999999999999999999999999999877644322211111 1 11111 01122456777788 6789
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++|+.+++++.++++++++|.|+||+++++.++..+.++.++++.|||+|++.++++|+++++.|++
T Consensus 80 ~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~ 159 (495)
T PRK07531 80 GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSP 159 (495)
T ss_pred CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCC---cchhhccccC
Q 009256 467 QVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLP---IGPFQEGGCW 538 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~---~Gpf~~~d~~ 538 (539)
+++++++++++.+|+.++++ ++.+||++||++.++++||+.++++| +++++||+++ .++|++ +|||++.|..
T Consensus 160 e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~ 237 (495)
T PRK07531 160 ETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIA 237 (495)
T ss_pred HHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhc
Confidence 99999999999999999999 59999999999999999999999996 6999999999 687774 8999999864
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=260.23 Aligned_cols=229 Identities=25% Similarity=0.405 Sum_probs=209.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHH-HHHHHhhcccccCCc-cC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVLDY-SE 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~ 384 (539)
+..||+|+|.|.+|++||-.|+..||+|.+||+.++++..+.+.+++.+..+-+.|.+... .+++.+..++.++++ +.
T Consensus 2 s~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~ 81 (313)
T KOG2305|consen 2 SFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL 81 (313)
T ss_pred CccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence 3579999999999999999999999999999999999999999988888776665433211 244556788999999 78
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++|=.|.||+||++.+|+.+++++.+.+.+.+|+.|+||++.++.....+.+.++++..||.|||+..|++|++|.+.|
T Consensus 82 vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwT 161 (313)
T KOG2305|consen 82 VKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWT 161 (313)
T ss_pred HhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCC
Confidence 89999999999999999999999999999999999999999999999888889999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCc---chhhcc
Q 009256 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPI---GPFQEG 535 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~---Gpf~~~ 535 (539)
+|+++++.+.+++.+|..|+.. ++.-||..||+.++++||..++++.|+ +..|+|.+| .|+|.++ ||+|.+
T Consensus 162 sp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~ 238 (313)
T KOG2305|consen 162 SPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQYAILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETA 238 (313)
T ss_pred ChhHHHHHHHHHHHhCCCCcccccccccceeccccHHHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhh
Confidence 9999999999999999999987 689999999999999999999999987 999999999 8999864 999876
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-29 Score=243.94 Aligned_cols=220 Identities=40% Similarity=0.634 Sum_probs=212.5
Q ss_pred CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccCC
Q 009256 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIES 398 (539)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe~ 398 (539)
||++||..+..+|++|+++|.|...++....++...+...+.++.++..+.......+..+.|++.+++||+||+++.+|
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav~ed 80 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAVFED 80 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccchhhh
Confidence 89999999999999999999999999989889999999999999999999988889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHH
Q 009256 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478 (539)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~ 478 (539)
+++|++++.+|++.+++++|+.+|+|++++..+...+..|++++|+|||.|.+.++++|++.+.+|+..++..+...-..
T Consensus 81 l~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~ 160 (380)
T KOG1683|consen 81 LELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSP 160 (380)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEEcCcccchhhcchHHHHHHHHHHHHc-CCCHHHHHHHHHhCCCCcchhhccccC
Q 009256 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAIRSFGLPIGPFQEGGCW 538 (539)
Q Consensus 479 lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~-G~~~~~id~a~~~~g~~~Gpf~~~d~~ 538 (539)
.|+.|++|++++||.+||++..|++++..+..+ |++|.++|..++.+|+|+||+.+.|..
T Consensus 161 ~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~ 221 (380)
T KOG1683|consen 161 AGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGV 221 (380)
T ss_pred cCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhcc
Confidence 999999999999999999999999999888888 999999999999999999999999864
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=184.13 Aligned_cols=186 Identities=19% Similarity=0.188 Sum_probs=141.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||.+|.++||+|++|||++++...... ..| .....+. +++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~----------~~G-------------a~~a~s~~eaa~~ 57 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLA----------AAG-------------ATVAASPAEAAAE 57 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHH----------HcC-------------CcccCCHHHHHHh
Confidence 37999999999999999999999999999999998433311 112 2333444 78899
Q ss_pred cCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCC--------CCe
Q 009256 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV--------MPL 455 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~--------~~~ 455 (539)
||+||.|+|++.++...++. .+.+.++++++++++|+.-|.. +++..+.. .|.+|++.|-. +.+
T Consensus 58 aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~----~G~~~lDAPVsGg~~~A~~GtL 133 (286)
T COG2084 58 ADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAA----KGLEFLDAPVSGGVPGAAAGTL 133 (286)
T ss_pred CCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHh----cCCcEEecCccCCchhhhhCce
Confidence 99999999999999888884 5888899999998766544433 34443322 26677766633 344
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCc-ccc---hhhcchHHH----HHHHHHHHHc-CCCHHHHHHHH-Hh
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RS 524 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~g~---v~nrl~~~~----~~Ea~~l~~~-G~~~~~id~a~-~~ 524 (539)
..++.+ +++.+++++++++.+|+.++++++. .|. ++|+++... +.|++.++++ |++++.+.+++ .+
T Consensus 134 timvGG---~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~ 209 (286)
T COG2084 134 TIMVGG---DAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGG 209 (286)
T ss_pred EEEeCC---CHHHHHHHHHHHHHhcCceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcc
Confidence 455566 8999999999999999999999864 333 558776543 3499999988 99999999999 44
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-20 Score=197.06 Aligned_cols=127 Identities=15% Similarity=0.143 Sum_probs=115.7
Q ss_pred CCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc
Q 009256 413 CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (539)
Q Consensus 413 ~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~ 492 (539)
..+++++....++.+.+..+....+|++++|+|||+|++.++++|++++..|++++++.+..+++.+|+.|++++|.+||
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v~d~~Gf 417 (507)
T PRK08268 338 SADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVIRDSPGF 417 (507)
T ss_pred ccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEeCCCccH
Confidence 45667776666666566666566788999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 493 AVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 493 v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++||++.+++||++.++++|+ +++|||.+| .++|||+|||+|+|.++
T Consensus 418 i~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p~GP~~~~D~~G 466 (507)
T PRK08268 418 VAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYPLGPLAWGDRLG 466 (507)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCcCHHHHHHHhC
Confidence 999999999999999999997 899999999 79999999999999764
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-20 Score=169.53 Aligned_cols=144 Identities=19% Similarity=0.142 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcCccc
Q 009256 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (539)
Q Consensus 31 ~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~ 110 (539)
-.+.+|.++++.+++|+++|+|||++ ||.|+|+.... ...+.+ +.+.+++|||||++||.|.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~~-------------~~~~~i-~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTASE-------------VIRAEL-AAARAAGKPVVASGGGNAA 83 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHHH-------------HHHHHH-HHHHhCCCCEEEEECCchh
Confidence 45789999999999999999999997 68898876431 123445 5688899999999999999
Q ss_pred cchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh--------ccccccC--HHHHHHHHHcCCCCCHHHHHHcCCc
Q 009256 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ--------RLPRLVG--LSKAIEMMLLSKSITSEEGWKLGLI 180 (539)
Q Consensus 111 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~r~vG--~~~a~~l~l~g~~~~a~eA~~~Glv 180 (539)
|+|+.|+++||+++++++++|+.+.+..+..+...... .+++..| ....++++..|+.++|+||++.|||
T Consensus 84 g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLV 163 (177)
T cd07014 84 SGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163 (177)
T ss_pred HHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCc
Confidence 99999999999999999999999987766432222121 3444445 8889999999999999999999999
Q ss_pred ceecCcchHHHH
Q 009256 181 DAVVTSEELLKV 192 (539)
Q Consensus 181 ~~vv~~~~l~~~ 192 (539)
|+|.+.+++.+.
T Consensus 164 D~v~~~~e~~~~ 175 (177)
T cd07014 164 DSLGSFDDAVAK 175 (177)
T ss_pred ccCCCHHHHHHH
Confidence 999998887653
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=162.94 Aligned_cols=149 Identities=25% Similarity=0.270 Sum_probs=118.5
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-cCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH
Q 009256 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (539)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (539)
+.|.++. .++..+...+.+.++.+++++ ++.|+|. .. -|+++.. ...++ ++|
T Consensus 2 ~vv~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~vvl~InS-----pGG~v~~----------------~~~i~-~~l 54 (187)
T cd07020 2 YVLEING----AITPATADYLERAIDQAEEGG-ADALIIELDT-----PGGLLDS----------------TREIV-QAI 54 (187)
T ss_pred EEEEEee----EEChHHHHHHHHHHHHHHhCC-CCEEEEEEEC-----CCCCHHH----------------HHHHH-HHH
Confidence 5566654 366778889999999998665 7878775 32 2333321 22455 568
Q ss_pred HhCCCcEEEEEc---CccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCc--------------chhhccccccCH-
Q 009256 95 EDCKKPIVAAVE---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGF--------------GGTQRLPRLVGL- 156 (539)
Q Consensus 95 ~~~~~p~iaav~---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~l~r~vG~- 156 (539)
..+||||||+|+ |+|+|||+.|+++||+++++++++|+.++...+..+.. +....+++..|.
T Consensus 55 ~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~ 134 (187)
T cd07020 55 LASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRN 134 (187)
T ss_pred HhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 899999999999 99999999999999999999999999999985544432 234578888898
Q ss_pred -HHHHHHHHcCCCCCHHHHHHcCCcceecCcc-hHHH
Q 009256 157 -SKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-ELLK 191 (539)
Q Consensus 157 -~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-~l~~ 191 (539)
.++++++++|+.++|+||+++||||+|++++ ++..
T Consensus 135 ~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~ 171 (187)
T cd07020 135 AEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLK 171 (187)
T ss_pred HHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHH
Confidence 7999999999999999999999999999886 5653
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-18 Score=170.43 Aligned_cols=186 Identities=18% Similarity=0.226 Sum_probs=135.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
||+|||+|.||.+||..|+++|++|++||+++++.+.+.+ .|. ...++. +.+++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~-------------~~~~~~~~~~~~a 56 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA-----------AGA-------------VTAETARQVTEQA 56 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CCC-------------cccCCHHHHHhcC
Confidence 5999999999999999999999999999999988776532 121 112233 668899
Q ss_pred CEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCC--------CCee
Q 009256 389 DMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV--------MPLL 456 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~--------~~~v 456 (539)
|+||+|+|++..++..++. .+.+.+++++++++.++..+.. ++...+... |.||+++|.. +.+.
T Consensus 57 Divi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~ 132 (291)
T TIGR01505 57 DVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLS 132 (291)
T ss_pred CEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEE
Confidence 9999999988777766553 3667778888887554443332 344444321 4444443322 1233
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-ccc---chhhcchHHH----HHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPY----SQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g---~v~nrl~~~~----~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
.++++ +++.+++++++++.+|+.++++++ ..| .++|+++... ++|++.++++ |++++++.+++ .+.+
T Consensus 133 i~~gg---~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~ 209 (291)
T TIGR01505 133 IMVGG---DQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLA 209 (291)
T ss_pred EEecC---CHHHHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 34444 789999999999999999999975 555 4778887654 7799999987 89999999999 4443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=165.68 Aligned_cols=189 Identities=17% Similarity=0.209 Sum_probs=136.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+++|+|||+|.||.++|..|++.|++|++||+++++.+.+.+ .+ ....++. +.++
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~ 57 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA-----------AG-------------AETASTAKAVAE 57 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------CC-------------CeecCCHHHHHh
Confidence 358999999999999999999999999999999988665422 11 2233444 5578
Q ss_pred CcCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCCC-------Ce
Q 009256 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PL 455 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~~-------~~ 455 (539)
+||+||+|+|++..++..++ ..+.+.+++++++++.++..+.. ++.+.+... |.||.++|..+ ..
T Consensus 58 ~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~----g~~~~d~pv~g~~~~a~~g~ 133 (296)
T PRK11559 58 QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK----GIEMLDAPVSGGEPKAIDGT 133 (296)
T ss_pred cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHc----CCcEEEcCCCCCHHHHhhCc
Confidence 99999999998887766654 34777888899888555444322 444444321 45665555332 22
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-cccch---hhcchHH----HHHHHHHHHHc-CCCHHHHHHHH-HhC
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSF 525 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~v---~nrl~~~----~~~Ea~~l~~~-G~~~~~id~a~-~~~ 525 (539)
++++.+ .+++.+++++++++.+|+.++++++ .+|++ +|+++.+ .++|++.++++ |++++++++++ .++
T Consensus 134 l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~ 211 (296)
T PRK11559 134 LSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGL 211 (296)
T ss_pred EEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc
Confidence 334433 2689999999999999999999974 56664 5776554 47899999987 89999999998 444
Q ss_pred C
Q 009256 526 G 526 (539)
Q Consensus 526 g 526 (539)
+
T Consensus 212 ~ 212 (296)
T PRK11559 212 A 212 (296)
T ss_pred c
Confidence 3
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-17 Score=155.54 Aligned_cols=190 Identities=19% Similarity=0.172 Sum_probs=135.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
+.++||+||+|.||.+|+.+|.++||.|++|||+.++.+.+.+. | .+...++ |..
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~-----------G-------------a~v~~sPaeVa 89 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEA-----------G-------------ARVANSPAEVA 89 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHh-----------c-------------hhhhCCHHHHH
Confidence 46799999999999999999999999999999999988877442 2 2223333 778
Q ss_pred CCcCEEEEcccCChhHHHHHHHH--HHHhCCCCeEE-EecCCCCCh---HHHhhccCC-CCcEEEeccC---CCCCCCCe
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCIL-ATNTSTIDL---NIVGEKTSS-QDRIIGAHFF---SPAHVMPL 455 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~--l~~~~~~~~ii-~s~ts~~~~---~~i~~~~~~-~~r~vg~h~~---~p~~~~~~ 455 (539)
++||+||.++|+..+++..++.. +.+.++++... +++| ++.+ .++++.+.. .-+++-.+.- .++..+.+
T Consensus 90 e~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmS-Tidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~L 168 (327)
T KOG0409|consen 90 EDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMS-TIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTL 168 (327)
T ss_pred hhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceEEecc-ccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeE
Confidence 99999999999999998888865 44444454433 3333 3333 356655543 2233332211 11234445
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-ccc---chhhcchHHHH----HHHHHHHHc-CCCHHHHHHHH-Hh
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG---FAVNRAFFPYS----QSARLLVSL-GVDVFRIDSAI-RS 524 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g---~v~nrl~~~~~----~Ea~~l~~~-G~~~~~id~a~-~~ 524 (539)
..++.| +++.++++.++++.+||++++++. ..| -+.|+++.+.. .|++.+... |+|+..+-+++ .+
T Consensus 169 timagG---de~~~~~~~~~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G 244 (327)
T KOG0409|consen 169 TIMAGG---DEALFEAASPVFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTG 244 (327)
T ss_pred EEEecC---cHHHHHHHHHHHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 555554 899999999999999999999975 333 36688866443 399999977 99999999999 44
|
|
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=152.60 Aligned_cols=156 Identities=18% Similarity=0.193 Sum_probs=116.9
Q ss_pred cEEEEEeCCC--C-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 14 GVAIITLINP--P-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 14 ~v~~i~l~~p--~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+|++|.++-| + .+..+...+.+|.++|+.+..||++++|||+ .||.|+|+..+.. ..+.+
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~~-------------~~~~l 63 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASEV-------------IRAEL 63 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHHH-------------HHHHH
Confidence 4778888766 3 2444566789999999999999999999998 6999999976532 12345
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCC----------CCcchhhccccccCH----
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI----------PGFGGTQRLPRLVGL---- 156 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~----------p~~g~~~~l~r~vG~---- 156 (539)
+.+++++|||||+++|.|.|+|+.|+++||++++++++.|+. +|++ +..|..+.+.+..|.
T Consensus 64 -~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a~~gs----iGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~ 138 (211)
T cd07019 64 -AAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPSTLTGS----IGIFGVITTVENSLDSIGVHTDGVSTSPLADVS 138 (211)
T ss_pred -HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCCEEEE----eEEEEEcCCHHHHHHhcCCceEEEEecCcccCC
Confidence 568889999999999999999999999999999999999873 3333 333333322222120
Q ss_pred -----------------------------------HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH
Q 009256 157 -----------------------------------SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (539)
Q Consensus 157 -----------------------------------~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 191 (539)
....+-+..|..+++++|++.||||+|...++...
T Consensus 139 ~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 139 ITRALPPEAQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 11123355788999999999999999987776554
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=153.57 Aligned_cols=188 Identities=13% Similarity=0.118 Sum_probs=132.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||..|+++|++|++||+++++.+.+.+ .+ .....+. +.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~ 57 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD-----------KG-------------ATPAASPAQAAAG 57 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CcccCCHHHHHhc
Confidence 58999999999999999999999999999999998776532 11 2223344 66789
Q ss_pred cCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
||+||+|+|++..++..+.. .+.+.++++.++++.++..+.. ++...+. ..-+++.......+ ..+.+..++
T Consensus 58 aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~ 137 (296)
T PRK15461 58 AEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLA 137 (296)
T ss_pred CCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEE
Confidence 99999999988766655542 4666788888887655544432 3433332 22334444333322 233444455
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcCc-cc---chhhcchH----HHHHHHHHHHHc-CCCHHHHHHHHH
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNC-TG---FAVNRAFF----PYSQSARLLVSL-GVDVFRIDSAIR 523 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~g---~v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~~ 523 (539)
.+ +++.+++++++++.+|+.++++++. .| -++|+++. ..+.|++.+++. |++++.+-+++.
T Consensus 138 gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~ 207 (296)
T PRK15461 138 GG---TAEQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMS 207 (296)
T ss_pred CC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 55 8899999999999999999999863 22 13455433 345699999987 999999888883
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=147.22 Aligned_cols=185 Identities=19% Similarity=0.133 Sum_probs=134.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~----~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
+||+|||+|.||.+|+..|.++|+ +|++| |+++++.+.+.+ .| +...++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~ 56 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-----------LG-------------VKTAASNT 56 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-----------cC-------------CEEeCChH
Confidence 379999999999999999999998 89999 999887655421 12 2233344
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT 461 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~ 461 (539)
+.+++||+||+|++ ++....++.++.+.++++++|+|.+++++..++....... ++++.+|..|...+..+. ++.+
T Consensus 57 e~~~~aDvVil~v~--~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~ 133 (266)
T PLN02688 57 EVVKSSDVIILAVK--PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLG 133 (266)
T ss_pred HHHhcCCEEEEEEC--cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeC
Confidence 56789999999996 5557788888888888888888888899998888766543 688888877776665554 4567
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcCc-----ccc--hhhcchHHHHHHHHH--HHHcCCCHHHHHHHH
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGF--AVNRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~~-----~g~--v~nrl~~~~~~Ea~~--l~~~G~~~~~id~a~ 522 (539)
..++++.++.++++|+.+|. ++++++. .+. -...+++ .+.|++. ..+.|+++++..+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~~g~g~a~~~-~~~~a~~ea~~~~Gl~~~~a~~~~ 201 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGLSGSGPAYIF-LAIEALADGGVAAGLPRDVALSLA 201 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhhhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77899999999999999999 7777431 111 1122222 2233322 334599998877776
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=150.41 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=117.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
+|+|||+|.||.++|..|.++|++|++||++++.++.+.+ .|..+ ...++.+.+++||
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~~~aD 59 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE-----------RGLVD-----------EASTDLSLLKDCD 59 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------cccCCHhHhcCCC
Confidence 7999999999999999999999999999999988776532 22111 1223345678999
Q ss_pred EEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCC------------CCCeee
Q 009256 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLLE 457 (539)
Q Consensus 390 lVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~------------~~~~ve 457 (539)
+||+|+|++. ...+++++.++++++++|++ +++.....+........+|++.||+.++. .+..+.
T Consensus 60 lVilavp~~~--~~~~~~~l~~~l~~~~ii~d-~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~ 136 (279)
T PRK07417 60 LVILALPIGL--LLPPSEQLIPALPPEAIVTD-VGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWV 136 (279)
T ss_pred EEEEcCCHHH--HHHHHHHHHHhCCCCcEEEe-CcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEE
Confidence 9999999544 45678899999988887755 44455544444434445799999976543 345556
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
+++++.++++.++.++++++.+|..++++++
T Consensus 137 l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~ 167 (279)
T PRK07417 137 LTPTENTDLNALAIVEELAVSLGSKIYTADP 167 (279)
T ss_pred EccCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 8888899999999999999999999998853
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.6e-15 Score=149.00 Aligned_cols=189 Identities=17% Similarity=0.183 Sum_probs=128.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
||+|||+|.||.+|+.+|.++||+|++||+++. .+.+ ...| .....+. +.+++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~-----------~~~g-------------~~~~~s~~~~~~~a 56 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADEL-----------LSLG-------------AVSVETARQVTEAS 56 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHH-----------HHcC-------------CeecCCHHHHHhcC
Confidence 799999999999999999999999999999874 2322 1112 1122233 567899
Q ss_pred CEEEEcccCChhHHHHHHHH--HHHhCCCCeEEEecCCCCChH--HHhhcc-CCCCcEEEeccCCCC---CCCCeeeeec
Q 009256 389 DMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN--IVGEKT-SSQDRIIGAHFFSPA---HVMPLLEIVR 460 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~--l~~~~~~~~ii~s~ts~~~~~--~i~~~~-~~~~r~vg~h~~~p~---~~~~~vei~~ 460 (539)
|+||.|+|++.+++..++.. +.+.+.++.+++..++..+.. +++..+ .+..+|+.......+ ..+.+.-++.
T Consensus 57 dvVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~g 136 (292)
T PRK15059 57 DIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVG 136 (292)
T ss_pred CEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEc
Confidence 99999999887777666542 566677888887655443332 333333 233345554322222 2344455556
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEEcCc-ccc---hhhcchHH----HHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~g~---v~nrl~~~----~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
| +++.+++++++++.+|+.++++++. .|. ++|+++.. .+.|++.+.+. |++++.+-+++ .+.+
T Consensus 137 G---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~ 209 (292)
T PRK15059 137 G---DEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFA 209 (292)
T ss_pred C---CHHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcc
Confidence 6 7899999999999999999999873 222 34555432 34599999977 99999988888 4443
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=152.60 Aligned_cols=186 Identities=17% Similarity=0.104 Sum_probs=130.1
Q ss_pred EEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEE
Q 009256 313 VIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMV 391 (539)
Q Consensus 313 iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlV 391 (539)
|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| ...+++. +.+++||+|
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~advV 56 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA-----------AG-------------AQAAASPAEAAEGADRV 56 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhcCCEE
Confidence 6899999999999999999999999999988776532 11 2223344 668899999
Q ss_pred EEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH---HHhhccC-CCCcEEEeccCCCC---CCCCeeeeecCC
Q 009256 392 IEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTE 462 (539)
Q Consensus 392 i~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~~~~ 462 (539)
|.|+|.+..+...++ +.+.+.++++.++++.+ ++.+. .+.+.+. ...+++.......+ ..+.+..++.+
T Consensus 57 il~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~s-t~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg- 134 (288)
T TIGR01692 57 ITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCS-TIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGG- 134 (288)
T ss_pred EEeCCChHHHHHHHcCcchHhhcCCCCCEEEECC-CCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECC-
Confidence 999997666554443 56777888888887655 55554 3333332 22233333222111 23345555666
Q ss_pred CCcHHHHHHHHHHHHHcCceeEEEcC-cccc---hhhcchHH----HHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 463 RTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~---v~nrl~~~----~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
+++.+++++++++.+|+.++++++ ..|. ++|+++.. .+.|++.++++ |++++++.+++ .+.|
T Consensus 135 --~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~ 206 (288)
T TIGR01692 135 --VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSG 206 (288)
T ss_pred --CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 678999999999999999999986 4444 44555432 45699999977 99999999999 4444
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-16 Score=144.16 Aligned_cols=153 Identities=15% Similarity=0.082 Sum_probs=104.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|+||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .......++ +.++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~------------------------~g~~~~~s~~e~~~ 56 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE------------------------AGAEVADSPAEAAE 56 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH------------------------TTEEEESSHHHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH------------------------hhhhhhhhhhhHhh
Confidence 579999999999999999999999999999999998887643 124445555 6788
Q ss_pred CcCEEEEcccCChhHHHHHHHH--HHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeee
Q 009256 387 DVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~--l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei 458 (539)
+||+||.|+|++.+++ .++.+ +.+.++++.+++..++..+.. ++++.+. ..-+++.......+ ..+++.-+
T Consensus 57 ~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~ 135 (163)
T PF03446_consen 57 QADVVILCVPDDDAVE-AVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIM 135 (163)
T ss_dssp HBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEE
T ss_pred cccceEeecccchhhh-hhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEE
Confidence 9999999999777655 55555 888899999888655443322 3444332 22233333322221 23456667
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeEEE-cC
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPVVV-GN 488 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v~v-~~ 488 (539)
+.| +++++++++++++.++.+++++ ++
T Consensus 136 ~gG---~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 136 VGG---DEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp EES----HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred ccC---CHHHHHHHHHHHHHHhCCceeeeCc
Confidence 777 7899999999999999998854 64
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.3e-16 Score=164.25 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=82.6
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcch
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGP 531 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gp 531 (539)
+.+|++++..|++++++++..++..+|+.|++++|.|||++||++++++|||..++++|+ +++|||.+| .++|||+||
T Consensus 378 ~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P~GP 457 (503)
T TIGR02279 378 KRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQIADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYPYGP 457 (503)
T ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCcCH
Confidence 578899999999999999999999999999999999999999999999999999999998 899999999 799999999
Q ss_pred hhccccCC
Q 009256 532 FQEGGCWS 539 (539)
Q Consensus 532 f~~~d~~~ 539 (539)
|+|+|.++
T Consensus 458 ~~~~D~~G 465 (503)
T TIGR02279 458 LAWAAQLG 465 (503)
T ss_pred HHHHHHhC
Confidence 99999864
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=156.14 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=130.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c---
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S--- 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~--- 383 (539)
+.+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+... ..|. ..+....++ +
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~-------~~Ga----------~~~~~a~s~~e~v~ 68 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------KEGN----------LPLYGFKDPEDFVL 68 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh-------hcCC----------cccccCCCHHHHHh
Confidence 457999999999999999999999999999999999887644210 0010 011123333 3
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeee
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE 457 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~ve 457 (539)
.++.+|+||.|+|++..+.. ++..+.+.+.++.++++.++..+.. .+...+. ..-+|+++.....+ ..++ .-
T Consensus 69 ~l~~~dvIi~~v~~~~aV~~-Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~i 146 (493)
T PLN02350 69 SIQKPRSVIILVKAGAPVDQ-TIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SL 146 (493)
T ss_pred cCCCCCEEEEECCCcHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eE
Confidence 33459999999998777654 4477888898999888766654433 3333332 23345554443322 3344 33
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCce------eEEEcCc-ccc----hhhcchHH---HHHHHHHHHHc--CCCHHHHHHH
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKV------PVVVGNC-TGF----AVNRAFFP---YSQSARLLVSL--GVDVFRIDSA 521 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~------~v~v~~~-~g~----v~nrl~~~---~~~Ea~~l~~~--G~~~~~id~a 521 (539)
++.| +++++++++++++.++.+ ++++++. .|. +.|-+.+. .+.|++.+++. |++++++-++
T Consensus 147 m~GG---~~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v 223 (493)
T PLN02350 147 MPGG---SFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV 223 (493)
T ss_pred EecC---CHHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 4455 889999999999999954 7888862 232 33444443 34599999865 8999999888
Q ss_pred H
Q 009256 522 I 522 (539)
Q Consensus 522 ~ 522 (539)
+
T Consensus 224 f 224 (493)
T PLN02350 224 F 224 (493)
T ss_pred H
Confidence 4
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-14 Score=140.75 Aligned_cols=188 Identities=14% Similarity=0.128 Sum_probs=133.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.+||+|||+|.||.+|+..|.++| ++|+++||+++ +++.+.+. . .+..+.+.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~----------~-------------g~~~~~~~ 59 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK----------Y-------------GVKGTHNK 59 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh----------c-------------CceEeCCH
Confidence 458999999999999999999998 79999999764 44443221 0 12233344
Q ss_pred -cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCC-eeeeec
Q 009256 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVR 460 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~-~vei~~ 460 (539)
+.+.+||+||.|++ +.....++.++.+.+.++.+|++..++++++.+........++++.+|+.|..... +.-+++
T Consensus 60 ~e~~~~aDvVilav~--p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~ 137 (279)
T PRK07679 60 KELLTDANILFLAMK--PKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP 137 (279)
T ss_pred HHHHhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence 55789999999998 44456777888888888889999889999998888776555799999976655433 444557
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEEcCc-----ccchh--hcchHHHHHHHHH-HH-HcCCCHHHHHHHH
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAV--NRAFFPYSQSARL-LV-SLGVDVFRIDSAI 522 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-----~g~v~--nrl~~~~~~Ea~~-l~-~~G~~~~~id~a~ 522 (539)
++..+++.++.++++|+.+|... ++.+. .|... ..+ ..++.|++. .. +.|+++++..+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~-~v~e~~~~~~~a~~Gsgpa~-~~~~~eal~e~~~~~Gl~~~~a~~~~ 206 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVS-VVEEEDMHAVTALSGSGPAY-IYYVVEAMEKAAKKIGLKEDVAKSLI 206 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEE-EeCHHHhhhHHHhhcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77788999999999999999855 43321 11111 122 234445543 33 5599998877776
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.4e-14 Score=137.98 Aligned_cols=187 Identities=17% Similarity=0.173 Sum_probs=133.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
|++|+|||+|.||.+++..|.++| ++|.+||+++++.+.+.+.+ + +....+. +
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~----------g-------------~~~~~~~~~ 58 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY----------G-------------VRAATDNQE 58 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc----------C-------------CeecCChHH
Confidence 468999999999999999999999 78999999998876653311 1 2223333 4
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTE 462 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~~ 462 (539)
.+.+||+||+|+| +....++++++.+++ +++|++.+++++...++..++...+++..||..|......+. ++++.
T Consensus 59 ~~~~advVil~v~--~~~~~~v~~~l~~~~--~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~ 134 (267)
T PRK11880 59 AAQEADVVVLAVK--PQVMEEVLSELKGQL--DKLVVSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANA 134 (267)
T ss_pred HHhcCCEEEEEcC--HHHHHHHHHHHHhhc--CCEEEEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCC
Confidence 5789999999998 555678888887776 457778888999888887776566899999988876665554 55777
Q ss_pred CCcHHHHHHHHHHHHHcCceeEEEc-Cc--ccch-h----hcchHHHHHHHHHHH-HcCCCHHHHHHHH
Q 009256 463 RTSAQVILDLMTVGKIIKKVPVVVG-NC--TGFA-V----NRAFFPYSQSARLLV-SLGVDVFRIDSAI 522 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~~~v~v~-~~--~g~v-~----nrl~~~~~~Ea~~l~-~~G~~~~~id~a~ 522 (539)
.++++..+.++.+++.+|..+ ++. +. .... . ..+++.++....... +.|+++++..+++
T Consensus 135 ~~~~~~~~~v~~l~~~lG~~~-~~~~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~ 202 (267)
T PRK11880 135 LVSAEDRELVENLLSAFGKVV-WVDDEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLA 202 (267)
T ss_pred CCCHHHHHHHHHHHHhCCeEE-EECChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 889999999999999999744 444 21 1111 1 123333333333333 4588888765554
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=150.21 Aligned_cols=190 Identities=13% Similarity=0.111 Sum_probs=131.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC--
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-- 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-- 385 (539)
.+|+|||+|.||.+||.+|+++||+|++|||++++.+.+.+... ..|. .+..+.++ +.+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~-------~~g~-----------~i~~~~s~~e~v~~ 63 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-------EGNT-----------RVKGYHTLEELVNS 63 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh-------hcCC-----------cceecCCHHHHHhc
Confidence 47999999999999999999999999999999999887754211 0010 12233444 333
Q ss_pred -CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC--------CCCCee
Q 009256 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--------HVMPLL 456 (539)
Q Consensus 386 -~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~--------~~~~~v 456 (539)
.++|+||.++|....+ +.+++++.+++.++.+|++.+++.+..+........+ .|.||++.| ..++ .
T Consensus 64 l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~--~Gi~fldapVSGG~~gA~~G~-~ 139 (470)
T PTZ00142 64 LKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEE--KGILYLGMGVSGGEEGARYGP-S 139 (470)
T ss_pred CCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHH--cCCeEEcCCCCCCHHHHhcCC-E
Confidence 4689999999866554 5566889999999999998777766553322111111 145555444 2233 3
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCce------eEEEcC-cccc----hhhcchHH---HHHHHHHHHH--cCCCHHHHHH
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKV------PVVVGN-CTGF----AVNRAFFP---YSQSARLLVS--LGVDVFRIDS 520 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~------~v~v~~-~~g~----v~nrl~~~---~~~Ea~~l~~--~G~~~~~id~ 520 (539)
-++.| +++++++++++++.++.+ +.++++ ..|. +.|-+.+. .+.|++.+++ .|++++++-+
T Consensus 140 lm~GG---~~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~ 216 (470)
T PTZ00142 140 LMPGG---NKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSE 216 (470)
T ss_pred EEEeC---CHHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 34455 889999999999999987 677875 3332 33555444 3459999996 4899999988
Q ss_pred HHH
Q 009256 521 AIR 523 (539)
Q Consensus 521 a~~ 523 (539)
++.
T Consensus 217 v~~ 219 (470)
T PTZ00142 217 VFN 219 (470)
T ss_pred HHH
Confidence 874
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6e-14 Score=144.96 Aligned_cols=171 Identities=19% Similarity=0.186 Sum_probs=121.7
Q ss_pred CcceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 307 ~~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
.+++|+||| +|.||+++|..|.++|++|++||+++.. .. .+.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~--~~----------------------------------~~~~ 140 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWD--RA----------------------------------EDIL 140 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcch--hH----------------------------------HHHH
Confidence 467899998 9999999999999999999999986420 00 0335
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccCCCCcEEEeccCCCCCCCCeee--eecC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE--IVRT 461 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve--i~~~ 461 (539)
++||+||+|+|++. ...+++++.+ ++++++|++++|. .++..+..... .+|+|.||+.++....+.. ++..
T Consensus 141 ~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~G~~~~~~~~~~vv~~ 215 (374)
T PRK11199 141 ADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMFGPDVGSLAKQVVVVC 215 (374)
T ss_pred hcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCCCCCCcccCCCEEEEc
Confidence 78999999999665 5678888888 8999999988775 33456655443 3699999998886543332 4455
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcC-cccchh---hcchH-HHHHHHHHHHHcCCCHHHH
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFAV---NRAFF-PYSQSARLLVSLGVDVFRI 518 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~v~---nrl~~-~~~~Ea~~l~~~G~~~~~i 518 (539)
+.++++.++.+.++++.+|..+++++. ....++ +-+-+ ....++..+.+.+.+++++
T Consensus 216 ~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~ 277 (374)
T PRK11199 216 DGRQPEAYQWLLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQL 277 (374)
T ss_pred CCCCchHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 667889999999999999999999853 222222 22211 1122455555556665553
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-14 Score=141.46 Aligned_cols=187 Identities=10% Similarity=0.043 Sum_probs=127.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
+|+|||+|.||.+||..|+++|++|++||+++++.+.+.+. +.....+ ..+. +.+.++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~-----------g~~~~~s----------~~~~~~~~~~~ 60 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED-----------RTTGVAN----------LRELSQRLSAP 60 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-----------CCcccCC----------HHHHHhhcCCC
Confidence 79999999999999999999999999999999987776331 1100000 0111 345679
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH--Hhhcc-CCCCcEEEeccCCCC---CCCCeeeeecCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKT-SSQDRIIGAHFFSPA---HVMPLLEIVRTE 462 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~--i~~~~-~~~~r~vg~h~~~p~---~~~~~vei~~~~ 462 (539)
|+||.|+|.+ ..+.+++++.++++++.+|++.+++.+... +...+ ....+++..+....+ ..+ +.-++.|
T Consensus 61 dvIi~~vp~~--~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG- 136 (298)
T TIGR00872 61 RVVWVMVPHG--IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGG- 136 (298)
T ss_pred CEEEEEcCch--HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCC-
Confidence 9999999976 466777889999989888887766654432 22222 222344444433222 112 3334455
Q ss_pred CCcHHHHHHHHHHHHHcCc---eeEEEcCc-ccc----hhhcchHHH---HHHHHHHHHc-C--CCHHHHHHHHH
Q 009256 463 RTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPY---SQSARLLVSL-G--VDVFRIDSAIR 523 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~---~~v~v~~~-~g~----v~nrl~~~~---~~Ea~~l~~~-G--~~~~~id~a~~ 523 (539)
+++.++.++++++.++. ..+++++. .|. +.|-+.+.. +.|++.+++. | ++++++-++|+
T Consensus 137 --~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~ 209 (298)
T TIGR00872 137 --DGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWR 209 (298)
T ss_pred --CHHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHc
Confidence 78999999999999986 46788763 222 334454433 3499999987 5 59999999993
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=136.08 Aligned_cols=152 Identities=16% Similarity=0.215 Sum_probs=125.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|+||.+|+..|.++|+ +|+++|+++++++.+.+. .| +...++. +.
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~----------~g-------------~~~~~~~~e~ 60 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK----------YG-------------ITITTNNNEV 60 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------cC-------------cEEeCCcHHH
Confidence 79999999999999999999885 799999999887665321 11 2223344 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee-cCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~-~~~~ 463 (539)
+.+||+||.|++ +.....+++++.++++++.+++|...++++.+++..+....+++...|+.|...+..+..+ +++.
T Consensus 61 ~~~aDiIiLavk--P~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~ 138 (272)
T PRK12491 61 ANSADILILSIK--PDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEM 138 (272)
T ss_pred HhhCCEEEEEeC--hHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCC
Confidence 789999999998 4667788899998888889999999999999999988766689999999988887777655 6777
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
.+++..+.++.+|..+|.. +++.
T Consensus 139 ~~~~~~~~v~~lf~~~G~~-~~~~ 161 (272)
T PRK12491 139 VTEKDIKEVLNIFNIFGQT-EVVN 161 (272)
T ss_pred CCHHHHHHHHHHHHcCCCE-EEEc
Confidence 8899999999999999987 4554
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-14 Score=147.30 Aligned_cols=202 Identities=13% Similarity=0.119 Sum_probs=128.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
++||+|||+|.||.++|..|+++||+|++||+++++++.+.... +..++..+.+. ...+++..+++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~--------~~~g~l~~~~~-- 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTA--------VEGGYLRATTT-- 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHH--------hhcCceeeecc--
Confidence 57899999999999999999999999999999999988753211 00011111000 00133444443
Q ss_pred CCCCcCEEEEcccCC--------hhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCC--CC-cE-------EE
Q 009256 384 EFKDVDMVIEAVIES--------VPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS--QD-RI-------IG 443 (539)
Q Consensus 384 ~~~~aDlVi~avpe~--------~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~--~~-r~-------vg 443 (539)
+++||+||.|+|.+ ......+.+.+.++++++++|+..|+..+-+ .+...+.. +. ++ ..
T Consensus 73 -~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~ 151 (415)
T PRK11064 73 -PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD 151 (415)
T ss_pred -cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence 45899999999974 2455666788999999999887544432221 22221110 00 00 00
Q ss_pred ecc-CCCC--CCCCee-------eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCc-----ccchhhcchH---HHHHHH
Q 009256 444 AHF-FSPA--HVMPLL-------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAVNRAFF---PYSQSA 505 (539)
Q Consensus 444 ~h~-~~p~--~~~~~v-------ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-----~g~v~nrl~~---~~~~Ea 505 (539)
.++ ++|- .-+..+ -++.| .+++..++++++++.++..++++++. ..++.|-++. +++||+
T Consensus 152 f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~ 229 (415)
T PRK11064 152 INIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANEL 229 (415)
T ss_pred eEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 1221 111111 34444 37899999999999999888777642 2244465533 778999
Q ss_pred HHHHHc-CCCHHHHHHHH
Q 009256 506 RLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 506 ~~l~~~-G~~~~~id~a~ 522 (539)
..+++. |+++.++-+++
T Consensus 230 ~~lae~~GiD~~~v~~~~ 247 (415)
T PRK11064 230 SLICADQGINVWELIRLA 247 (415)
T ss_pred HHHHHHhCCCHHHHHHHh
Confidence 999988 99999998888
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=137.56 Aligned_cols=185 Identities=17% Similarity=0.091 Sum_probs=124.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-- 386 (539)
+|+|||+|.||.+||.+|+++|++|++||+++++.+.+.+ .| .....+. +.++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~s~~~~~~~~ 57 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-----------LG-------------ITARHSLEELVSKL 57 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHHhC
Confidence 7999999999999999999999999999999987766522 11 1223333 3333
Q ss_pred -CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeee
Q 009256 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 387 -~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
.+|+||.|+|++..+ +.++.++.+.++++.+++..+++.+.. ++...+. +..+++.......+ ..+. .-++
T Consensus 58 ~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~ 135 (299)
T PRK12490 58 EAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMV 135 (299)
T ss_pred CCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEe
Confidence 379999999977554 455577888888888887665544432 3333332 22233333322222 1222 3344
Q ss_pred cCCCCcHHHHHHHHHHHHHcCc---eeEEEcCc-ccc---hhhcch-H---HHHHHHHHHHHc-C--CCHHHHHHHHH
Q 009256 460 RTERTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF---AVNRAF-F---PYSQSARLLVSL-G--VDVFRIDSAIR 523 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~---~~v~v~~~-~g~---v~nrl~-~---~~~~Ea~~l~~~-G--~~~~~id~a~~ 523 (539)
.| +++++++++++++.+|. .++++++. .|. ++|+++ . ..+.|++.++++ | ++++++-++|.
T Consensus 136 gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~ 210 (299)
T PRK12490 136 GG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWR 210 (299)
T ss_pred cC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHc
Confidence 55 78999999999999997 78888862 121 334443 3 234499999987 8 89999999984
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.5e-14 Score=163.95 Aligned_cols=191 Identities=15% Similarity=0.100 Sum_probs=137.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| ....++. +.+++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~a~~ 60 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE-----------LG-------------GHRCDSPAEAAKD 60 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----------cC-------------CeecCCHHHHHhc
Confidence 57999999999999999999999999999999998887633 22 2223444 67789
Q ss_pred cCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccC-CC--CcEEEeccCCCC---CCCCeee
Q 009256 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQ--DRIIGAHFFSPA---HVMPLLE 457 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~--~r~vg~h~~~p~---~~~~~ve 457 (539)
||+||.|+|++.+++..++ ..+.+.+.++.+++..++..+.. +++..+. .. -+++.......+ ..+.+.-
T Consensus 61 advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~i 140 (1378)
T PLN02858 61 AAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMI 140 (1378)
T ss_pred CCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEE
Confidence 9999999999888777665 35777788888887654433322 3443332 22 224444333322 3456666
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCceeEEE-cC-cccc---hhhcchHH----HHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKVPVVV-GN-CTGF---AVNRAFFP----YSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~~v~v-~~-~~g~---v~nrl~~~----~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
++.| +++.+++++++++.+|+.++++ ++ +.|. ++|+++.. .+.|++.+.+. |++++.+-+++ .+.|
T Consensus 141 mvGG---~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g 217 (1378)
T PLN02858 141 IASG---RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAG 217 (1378)
T ss_pred EEcC---CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCc
Confidence 7777 7899999999999999998876 54 2232 44665443 34599999977 99999999999 5544
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-14 Score=141.42 Aligned_cols=182 Identities=17% Similarity=0.144 Sum_probs=124.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-- 386 (539)
+|+|||+|.||.+||.+|+++|++|++||+++++.+.+.+ .| ....++. +.++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-----------~g-------------~~~~~~~~e~~~~~ 57 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-----------EG-------------ATGADSLEELVAKL 57 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------CC-------------CeecCCHHHHHhhc
Confidence 7999999999999999999999999999999988776522 12 2222233 2223
Q ss_pred -CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCCC-------Cee
Q 009256 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHVM-------PLL 456 (539)
Q Consensus 387 -~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~~-------~~v 456 (539)
++|+||.++|.+..+ ..++..+.+.++++.++++.+++.+.. .+...+... |.+|.+.|-.+ ...
T Consensus 58 ~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~----g~~~~dapvsG~~~~a~~g~~ 132 (301)
T PRK09599 58 PAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEK----GIHFVDVGTSGGVWGLERGYC 132 (301)
T ss_pred CCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHc----CCEEEeCCCCcCHHHHhcCCe
Confidence 479999999976554 455577888888888888766554433 333333211 34444433221 122
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCc----eeEEEcCc-ccc---hh-hcchHHH---HHHHHHHHH---cCCCHHHHHHH
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKK----VPVVVGNC-TGF---AV-NRAFFPY---SQSARLLVS---LGVDVFRIDSA 521 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~----~~v~v~~~-~g~---v~-nrl~~~~---~~Ea~~l~~---~G~~~~~id~a 521 (539)
-++.| +++++++++++++.+++ .++++++. .|. ++ |-+.+.. +.|++.+++ .|++++++-++
T Consensus 133 ~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~ 209 (301)
T PRK09599 133 LMIGG---DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEV 209 (301)
T ss_pred EEecC---CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 23444 88999999999999998 78889873 222 22 4444433 349999996 47899999999
Q ss_pred HH
Q 009256 522 IR 523 (539)
Q Consensus 522 ~~ 523 (539)
|.
T Consensus 210 ~~ 211 (301)
T PRK09599 210 WR 211 (301)
T ss_pred Hh
Confidence 94
|
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-14 Score=154.91 Aligned_cols=172 Identities=22% Similarity=0.254 Sum_probs=135.6
Q ss_pred cCcEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC---CCCcccCCCchhhhhhcCCCcccccchH
Q 009256 12 NDGVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 12 ~~~v~~i~l~~p-~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~---g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
+++|++|+++.+ . .|..+....+.+.+.++.+..|++||+|||+-. |..|++ +.
T Consensus 307 ~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as--------------------e~ 366 (584)
T TIGR00705 307 QDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS--------------------EI 366 (584)
T ss_pred CCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH--------------------HH
Confidence 578999999987 2 354444456788899999999999999999854 222322 01
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceE------eCCc------ccCCCCCCcchhhcccc-
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL------GLPE------LTLGVIPGFGGTQRLPR- 152 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~l~r- 152 (539)
..+.+ ..+...+||||+.++|.|.+||+.++++||.++|++++.+ +.+. .++|+.|+...+..+.+
T Consensus 367 i~~~i-~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 367 IRREL-ARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHH-HHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 12333 4467788999999999999999999999999999999977 5553 58999998887776665
Q ss_pred ---------------------------ccCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHH
Q 009256 153 ---------------------------LVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (539)
Q Consensus 153 ---------------------------~vG~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 200 (539)
.|+..| +.+.+.+|+.++++||+++||||++. .+ +++.+.|.++
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~l 521 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKL 521 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHH
Confidence 677777 88899999999999999999999994 34 6778888888
Q ss_pred Hhc-Cchhh
Q 009256 201 AAR-RKPWI 208 (539)
Q Consensus 201 a~~-~~~~~ 208 (539)
+.. ++..+
T Consensus 522 a~~~~~~~v 530 (584)
T TIGR00705 522 AHCREQWSV 530 (584)
T ss_pred cCCCCCceE
Confidence 888 44433
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=136.84 Aligned_cols=198 Identities=19% Similarity=0.242 Sum_probs=145.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||.|++|...+.+|++.||+|+.+|+++++++.+.+.. +..++++++.+..+ +++++++|+ +
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~--------gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLAS--------GRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhcccc--------CcEEEEcCHHH
Confidence 4899999999999999999999999999999999999988753 56677777766544 679999999 6
Q ss_pred CCCCcCEEEEcccC--------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH---Hhhc----c--------CCCCc
Q 009256 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEK----T--------SSQDR 440 (539)
Q Consensus 384 ~~~~aDlVi~avpe--------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~---i~~~----~--------~~~~r 440 (539)
+++++|++|+|||. |......+.++|.++++..++|+ +.|++|+.+ +... . .+|+-
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEF 151 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEVASNPEF 151 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE-EcCCCCCCchHHHHHHHHhhcccCCceEecChHH
Confidence 79999999999976 45566777888999998876654 567777642 2221 1 11210
Q ss_pred ----EEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHc--CceeEEEcC-----cccchhhcchH---HHHHHHH
Q 009256 441 ----IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGN-----CTGFAVNRAFF---PYSQSAR 506 (539)
Q Consensus 441 ----~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~l--g~~~v~v~~-----~~g~v~nrl~~---~~~~Ea~ 506 (539)
..--.|++|.++ |++.. ++++.+.+++++..+ ...|+.+.+ ...+..|.+|+ +++||..
T Consensus 152 LREG~Av~D~~~PdRI-----ViG~~--~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia 224 (414)
T COG1004 152 LREGSAVYDFLYPDRI-----VIGVR--SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIA 224 (414)
T ss_pred hcCcchhhhccCCCeE-----EEccC--ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001124566554 55543 444677777787665 445555533 34577788876 7899999
Q ss_pred HHHHc-CCCHHHHHHHH
Q 009256 507 LLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 507 ~l~~~-G~~~~~id~a~ 522 (539)
.+++. |++.++|-+.+
T Consensus 225 ~ice~~g~D~~~V~~gI 241 (414)
T COG1004 225 NICEKVGADVKQVAEGI 241 (414)
T ss_pred HHHHHhCCCHHHHHHHc
Confidence 99988 99999998887
|
|
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.53 E-value=5e-14 Score=134.46 Aligned_cols=144 Identities=27% Similarity=0.324 Sum_probs=101.3
Q ss_pred CCC-CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhC--CCcE
Q 009256 25 VNA-LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDC--KKPI 101 (539)
Q Consensus 25 ~Na-l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~p~ 101 (539)
.|+ ++..++.+|.++++.++.|+++++|||+. +|.|+++... ..+. +.|..+ +|||
T Consensus 18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~-~~l~~~~~~KpV 76 (214)
T cd07022 18 LEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELA-DAIRAARAGKPI 76 (214)
T ss_pred ccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHH-HHHHHHhcCCCE
Confidence 354 56789999999999999999999999975 5566654322 1122 334444 5999
Q ss_pred EEEEcCccccchhHhhhccCEEEeeCCceEeCCccc------------CCCCCCc---------chhh---------cc-
Q 009256 102 VAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPGF---------GGTQ---------RL- 150 (539)
Q Consensus 102 iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~~---------g~~~---------~l- 150 (539)
||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+.. +..+ .+
T Consensus 77 iA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~ 156 (214)
T cd07022 77 VAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQ 156 (214)
T ss_pred EEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999998654332 3332110 0000 00
Q ss_pred ----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH
Q 009256 151 ----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191 (539)
Q Consensus 151 ----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~ 191 (539)
.|.+......+++ |+.+++++|++.||||++...+++..
T Consensus 157 ~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 157 AEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 1222233334444 99999999999999999987776543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=145.59 Aligned_cols=201 Identities=19% Similarity=0.153 Sum_probs=131.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|.||.++|..|+++||+|++||+++++++.+.+.. +..+...+.+. ...+++++++++ ++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~--------~~~g~l~~~~~~~~~ 73 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKA--------LAAGRLRATTDYEDA 73 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHh--------hhcCCeEEECCHHHH
Confidence 799999999999999999999999999999999888764311 00011111100 001345666676 56
Q ss_pred CCCcCEEEEcccCChh--------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHh-hccCC-------CCcEEEec
Q 009256 385 FKDVDMVIEAVIESVP--------LKQKIFSELEKACPPHCILATNTSTIDLN---IVG-EKTSS-------QDRIIGAH 445 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~--------~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~-~~~~~-------~~r~vg~h 445 (539)
+++||+||+|+|.... ....+.+.+.++++++++++..| ++++. ++. ..... ..-.+..+
T Consensus 74 ~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~S-Tv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~ 152 (411)
T TIGR03026 74 IRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLES-TVPPGTTEEVVKPILERASGLKLGEDFYLAYN 152 (411)
T ss_pred HhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeC-cCCCCchHHHHHHHHHhhcCCCCCCCceEEEC
Confidence 8999999999997643 35566788888888988877543 44333 232 11111 11122333
Q ss_pred cCCCCCCCCe-------eeeecCCCCcHHHHHHHHHHHHHcC-ceeEEEcCcc-----cchhhcch---HHHHHHHHHHH
Q 009256 446 FFSPAHVMPL-------LEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGNCT-----GFAVNRAF---FPYSQSARLLV 509 (539)
Q Consensus 446 ~~~p~~~~~~-------vei~~~~~t~~e~~~~~~~l~~~lg-~~~v~v~~~~-----g~v~nrl~---~~~~~Ea~~l~ 509 (539)
|-.. ..+.. ..++.| .+++..++++++++.++ ..++++++.. .++.|-++ .++++|+..++
T Consensus 153 Pe~~-~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la 229 (411)
T TIGR03026 153 PEFL-REGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARIC 229 (411)
T ss_pred CCcC-CCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3110 11111 023333 38999999999999998 5777776522 23445442 47789999999
Q ss_pred Hc-CCCHHHHHHHH
Q 009256 510 SL-GVDVFRIDSAI 522 (539)
Q Consensus 510 ~~-G~~~~~id~a~ 522 (539)
+. |++++++-+++
T Consensus 230 ~~~GiD~~~v~~~~ 243 (411)
T TIGR03026 230 EALGIDVYEVIEAA 243 (411)
T ss_pred HHhCCCHHHHHHHh
Confidence 88 99999999998
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=141.14 Aligned_cols=192 Identities=14% Similarity=0.198 Sum_probs=121.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|.||.++|..++. ||+|++||+++++++.+.+.+ +..+.+.+... ..+++.+++. ++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~----------~~~l~~t~~~~~~ 70 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD----------KIHFNATLDKNEA 70 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC----------CCcEEEecchhhh
Confidence 79999999999999988875 999999999999999886632 11222222111 1345555555 66
Q ss_pred CCCcCEEEEcccCCh---------hHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccC------CCCcEEEe--
Q 009256 385 FKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS------SQDRIIGA-- 444 (539)
Q Consensus 385 ~~~aDlVi~avpe~~---------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~------~~~r~vg~-- 444 (539)
+++||+||+|+|++. .....+++.+.+ ++++.+++.. |++++. ++...+. .|++..-.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~-STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~a 148 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIK-STVPVGFTAAMHKKYRTENIIFSPEFLREGKA 148 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEe-eecCCchHHHHHHHhhcCcEEECcccccCCcc
Confidence 799999999999864 233455677776 5778777643 333433 3332221 12211100
Q ss_pred --ccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHH--cCceeE-EEcC-----cccchhhcchH---HHHHHHHHHHHc
Q 009256 445 --HFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI--IKKVPV-VVGN-----CTGFAVNRAFF---PYSQSARLLVSL 511 (539)
Q Consensus 445 --h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~--lg~~~v-~v~~-----~~g~v~nrl~~---~~~~Ea~~l~~~ 511 (539)
.+++|+.+ ++++ +++..+.+.+++.. ++..+. ++.+ ...++.|-++. +++||+..+++.
T Consensus 149 ~~d~~~p~rv-----v~G~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~ 220 (388)
T PRK15057 149 LYDNLHPSRI-----VIGE---RSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES 220 (388)
T ss_pred cccccCCCEE-----EEEc---CcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12333322 4444 34566777777754 554333 4543 22345565543 788999999988
Q ss_pred -CCCHHHHHHHH
Q 009256 512 -GVDVFRIDSAI 522 (539)
Q Consensus 512 -G~~~~~id~a~ 522 (539)
|+++.++-+++
T Consensus 221 ~GiD~~eV~~a~ 232 (388)
T PRK15057 221 LGLNTRQIIEGV 232 (388)
T ss_pred hCcCHHHHHHHh
Confidence 99999999998
|
|
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-14 Score=127.27 Aligned_cols=135 Identities=25% Similarity=0.272 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcC
Q 009256 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G 107 (539)
++..++++|.+.++.++.|+.+++|+|.. .|.|+|+... ..+. +.|..++||||+.++|
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~----------------~~i~-~~l~~~~kpvva~~~g 66 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG----------------MNIV-DALQASRKPVIAYVGG 66 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH----------------HHHH-HHHHHhCCCEEEEECC
Confidence 56688999999999999999999999976 4667765421 2344 6688899999999999
Q ss_pred ccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchh-------------hcc------ccccCHHHHHHHHHcCCC
Q 009256 108 LALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT-------------QRL------PRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 108 ~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~-------------~~l------~r~vG~~~a~~l~l~g~~ 168 (539)
.|.++|+.|+++||.|++.+++.|++.....+.....+-. ..+ .|.+......+++..|..
T Consensus 67 ~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~ 146 (161)
T cd00394 67 QAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLV 146 (161)
T ss_pred hhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcE
Confidence 9999999999999999999999999988775543211000 111 122344456788889999
Q ss_pred CCHHHHHHcCCccee
Q 009256 169 ITSEEGWKLGLIDAV 183 (539)
Q Consensus 169 ~~a~eA~~~Glv~~v 183 (539)
++++||+++||||+|
T Consensus 147 ~~a~eA~~~GLvD~i 161 (161)
T cd00394 147 LTAQEALEYGLVDAL 161 (161)
T ss_pred EcHHHHHHcCCcCcC
Confidence 999999999999975
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-12 Score=151.23 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=133.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.+++|+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| .....+. +.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-----------~G-------------a~~~~s~~e~~ 378 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFEN-----------AG-------------GLAGNSPAEVA 378 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeecCCHHHHH
Confidence 3578999999999999999999999999999999988776532 12 1112334 667
Q ss_pred CCcCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCC--------CCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPA--------HVM 453 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~--------~~~ 453 (539)
++||+||.|+|++.+++..++. .+.+.+.++.+++..++.-|.. +++..+... -.|.+|.+.| ..+
T Consensus 379 ~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~--g~g~~~lDAPVsGg~~~A~~G 456 (1378)
T PLN02858 379 KDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENE--GRDIKLVDAPVSGGVKRAAMG 456 (1378)
T ss_pred hcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhh--CCCcEEEEccCCCChhhhhcC
Confidence 8999999999988777666653 3666778888887554433322 343333220 0134444433 344
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc--c---hhhcchH----HHHHHHHHHHHc-CCCHHHHHHHH-
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG--F---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI- 522 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g--~---v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~- 522 (539)
.+.-++.| +++.+++++++++.+|+.++++++.+| . ++|+++. +.+.|++.+++. |++++.+-+++
T Consensus 457 ~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~ 533 (1378)
T PLN02858 457 TLTIMASG---TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIIS 533 (1378)
T ss_pred CceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55566666 789999999999999998887643334 2 4465543 345699999977 99999999988
Q ss_pred HhCC
Q 009256 523 RSFG 526 (539)
Q Consensus 523 ~~~g 526 (539)
.+.|
T Consensus 534 ~s~g 537 (1378)
T PLN02858 534 NAGG 537 (1378)
T ss_pred hhcc
Confidence 4544
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-13 Score=132.10 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=109.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
||+|||+|.||.++|..|.++|+ +|++||++++..+.+.+ .|. .....+.+.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-----------~g~------------~~~~~~~~~~~~ 58 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-----------LGL------------VDEIVSFEELKK 58 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH-----------CCC------------CcccCCHHHHhc
Confidence 79999999999999999999996 79999999987666422 221 111223333456
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC-hHHHhhccCCCCcEEEeccCCC-----C-C------CCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-LNIVGEKTSSQDRIIGAHFFSP-----A-H------VMP 454 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~-~~~i~~~~~~~~r~vg~h~~~p-----~-~------~~~ 454 (539)
||+||.|+|.+ ....++.++.+ ++++++|++.+|+.. +.+..... .+.++++.||+.+ | . .+.
T Consensus 59 aD~Vilavp~~--~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~ 134 (275)
T PRK08507 59 CDVIFLAIPVD--AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPKAAIKGLYEGK 134 (275)
T ss_pred CCEEEEeCcHH--HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHHhccHHHhCCC
Confidence 99999999944 45577788888 888888887555322 11111111 2347999999742 2 1 345
Q ss_pred eeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 455 ~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+.+++.+.++++.++.++++++.+|..++++++
T Consensus 135 ~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 135 VVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 6667788888999999999999999999999863
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=138.39 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=115.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.+||..|.++|++|.+|+++++..+.... ...+..+ ..+++. +.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a---------~~~~~~~-----------~~~~~~~~~~~~ 60 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARA---------LGFGVID-----------ELAADLQRAAAE 60 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHH---------hcCCCCc-----------ccccCHHHHhcC
Confidence 37999999999999999999999999999998876443211 1112111 112333 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHH-hCCCCeEEEecCCCC--ChHHHhhccCCCCcEEEeccCCCCC------------C
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------------V 452 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~-~~~~~~ii~s~ts~~--~~~~i~~~~~~~~r~vg~h~~~p~~------------~ 452 (539)
||+||+|+|.+ ....+++++.+ .++++++|++.+|.. ....+........+|++.||+.... .
T Consensus 61 aDlVilavP~~--~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~ 138 (359)
T PRK06545 61 ADLIVLAVPVD--ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFE 138 (359)
T ss_pred CCEEEEeCCHH--HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHC
Confidence 99999999954 56788899887 478888886555442 2334444445667899999865431 2
Q ss_pred CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 453 ~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+....+++++.++++.++.++++++.+|..++++.
T Consensus 139 g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~ 173 (359)
T PRK06545 139 NAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLD 173 (359)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 33455788888999999999999999999999884
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=133.30 Aligned_cols=181 Identities=15% Similarity=0.059 Sum_probs=121.1
Q ss_pred cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccCC
Q 009256 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (539)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe~ 398 (539)
|.+||..|+++||+|++||++++.++... . +..... .++.+++. +.+++||+||.|+|.+
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~--~----~~l~~~-------------Gi~~asd~~eaa~~ADvVIlaVP~~ 92 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEEL--W----KKVEDA-------------GVKVVSDDAEAAKHGEIHILFTPFG 92 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHH--H----HHHHHC-------------CCEEeCCHHHHHhCCCEEEEECCCc
Confidence 78999999999999999999988644311 0 111122 23444454 6678999999999965
Q ss_pred hhHHHHHHHHHHHhCCCCeEEEecCCCCChH----HHhhccCCCCcEEEeccCCCCCC----CCeeeeecCC------CC
Q 009256 399 VPLKQKIFSELEKACPPHCILATNTSTIDLN----IVGEKTSSQDRIIGAHFFSPAHV----MPLLEIVRTE------RT 464 (539)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~----~i~~~~~~~~r~vg~h~~~p~~~----~~~vei~~~~------~t 464 (539)
. ..+.++..+.+.++++++|++.+++ ++. .+...+..+.+.+|.+|++|... ...++++.+. ..
T Consensus 93 ~-~v~~Vl~~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~ 170 (342)
T PRK12557 93 K-KTVEIAKNILPHLPENAVICNTCTV-SPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELA 170 (342)
T ss_pred H-HHHHHHHHHHhhCCCCCEEEEecCC-CHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCC
Confidence 5 3566778899999999988765544 433 33344544445567777665432 1223444433 33
Q ss_pred cHHHHHHHHHHHHHcCceeEEEcCcccch---hhcchHHHH----HHHHHHHHc-CCCHHHHHHH
Q 009256 465 SAQVILDLMTVGKIIKKVPVVVGNCTGFA---VNRAFFPYS----QSARLLVSL-GVDVFRIDSA 521 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v~~~~g~v---~nrl~~~~~----~Ea~~l~~~-G~~~~~id~a 521 (539)
+++.+++++++++.+|+++++++...|.+ +|+++.+.. .|++.+.++ |.+|.++-+-
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~ 235 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEK 235 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999999999999998887544433 356655443 488888877 7777765443
|
|
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-13 Score=129.80 Aligned_cols=155 Identities=22% Similarity=0.268 Sum_probs=110.2
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHH
Q 009256 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (539)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (539)
|++|.++-+ ... ...++.+|.++++.++.|+++++|+|++ +|.|+|+.... ...+.+ +.
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~~-------------~i~~~i-~~ 61 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVASE-------------EIYREI-RR 61 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHHH-------------HHHHHH-HH
Confidence 566777654 111 3789999999999999999999999998 57899886521 122445 56
Q ss_pred HHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcc------------cCCCCCCcchh--------------
Q 009256 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGT-------------- 147 (539)
Q Consensus 94 i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g~~-------------- 147 (539)
+..++|||||+++|.|.|+|+.|+++||.+++++++.|+..-+ ++|+-+..-.+
T Consensus 62 ~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s 141 (208)
T cd07023 62 LRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLT 141 (208)
T ss_pred HHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCC
Confidence 7889999999999999999999999999999999998864322 13332211100
Q ss_pred ----hcc-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHH
Q 009256 148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190 (539)
Q Consensus 148 ----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~ 190 (539)
..+ .|.+.... .+-++.|..+++++|++.||||++...++..
T Consensus 142 ~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~ 204 (208)
T cd07023 142 EEERAILQALVDDIYDQFVDVVAEGRGMSGER-LDKLADGRVWTGRQALELGLVDELGGLDDAI 204 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-HHHhcCCcEEEHHHHHHcCCCcccCCHHHHH
Confidence 000 11111122 2335678999999999999999998666544
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=142.48 Aligned_cols=190 Identities=15% Similarity=0.110 Sum_probs=127.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~ 385 (539)
+|+|||+|.||.+||.+|+++||+|++||+++++.+.+.+.. ..+. .+....+. +.+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~--------~~g~-----------~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEH--------AKGK-----------KIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhc--------cCCC-----------CceecCCHHHHHhhc
Confidence 489999999999999999999999999999999887764320 0010 01112222 335
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH--hhcc-CCCCcEEEeccCCCC---CCCCeeeee
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKT-SSQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i--~~~~-~~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
+.+|+||.|+|.+..+ ..++.++.++++++.+|++.+++.+.... ...+ ....+|++++....+ ..++ .-++
T Consensus 62 ~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~ 139 (467)
T TIGR00873 62 ERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMP 139 (467)
T ss_pred CCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCC
Confidence 6799999999976554 45668898999999999887766554432 2222 222234444433322 1222 2233
Q ss_pred cCCCCcHHHHHHHHHHHHHcCcee------EEEcCc-ccc----hhhcchHHH---HHHHHHHHH--cCCCHHHHHHHHH
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVP------VVVGNC-TGF----AVNRAFFPY---SQSARLLVS--LGVDVFRIDSAIR 523 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~------v~v~~~-~g~----v~nrl~~~~---~~Ea~~l~~--~G~~~~~id~a~~ 523 (539)
.| +++++++++++++.++..+ .++++. .|. +.|-+.+.. +.|++.+++ .|++++++-+++.
T Consensus 140 GG---~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~ 216 (467)
T TIGR00873 140 GG---SAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFT 216 (467)
T ss_pred CC---CHHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34 8899999999999999873 677753 332 335554444 349999874 4899999888884
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.3e-13 Score=129.84 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=118.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--ccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD--YSEF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~ 385 (539)
.++|+|+|+|.||+++|+.+..+|+.|.+++++......... .+.|..+. .+.+ .+.+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a---------~~lgv~d~-----------~~~~~~~~~~ 62 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA---------LELGVIDE-----------LTVAGLAEAA 62 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH---------hhcCcccc-----------cccchhhhhc
Confidence 468999999999999999999999988777666543222111 22232221 1112 2567
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCCCcEEEeccCCCCC------CCCeee
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAH------VMPLLE 457 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~~r~vg~h~~~p~~------~~~~ve 457 (539)
.++|+||.||| ......+++++.++++++++|++.+|.. ++..+....+...+|+|.||+..|+ ....+.
T Consensus 63 ~~aD~VivavP--i~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~v 140 (279)
T COG0287 63 AEADLVIVAVP--IEATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVV 140 (279)
T ss_pred ccCCEEEEecc--HHHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEE
Confidence 88999999999 7778899999999999999998777653 3445555453323899999988772 335567
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+++.+.++.+.++.++.+++.+|..++.+.
T Consensus 141 ltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 141 LTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred EcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 889988999999999999999999999884
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=141.01 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=124.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||.++|.+|++ ||+|++||+++++++.+.+..... .+. ..++.. ..+++.++++.+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~----~e~---~~~~l~-~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVN----LET---TEEELR-EARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCC----CCC---CHHHHH-hhCCeeEEeCHHHHcCC
Confidence 489999999999999999877 699999999999988875321000 000 001111 12356667777778999
Q ss_pred CEEEEcccCCh--------hHHHHHHHHHHHhCCCCeEEEecCCCCChH--HH-hhccCC------CCcEEEeccCCCCC
Q 009256 389 DMVIEAVIESV--------PLKQKIFSELEKACPPHCILATNTSTIDLN--IV-GEKTSS------QDRIIGAHFFSPAH 451 (539)
Q Consensus 389 DlVi~avpe~~--------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i-~~~~~~------~~r~vg~h~~~p~~ 451 (539)
|++|.|||++. .......+.|.++++++.+|+..|+..+-+ ++ ...+.. ...+.-.| +|..
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE~ 155 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPER 155 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCCc
Confidence 99999999652 222333467888999888877544433321 11 111111 01111111 1111
Q ss_pred ---------CCCeeeeecCCCCcHHHHHHHHHHHHHcC-ceeEEEcC-----cccchhhcch---HHHHHHHHHHHHc-C
Q 009256 452 ---------VMPLLEIVRTERTSAQVILDLMTVGKIIK-KVPVVVGN-----CTGFAVNRAF---FPYSQSARLLVSL-G 512 (539)
Q Consensus 452 ---------~~~~vei~~~~~t~~e~~~~~~~l~~~lg-~~~v~v~~-----~~g~v~nrl~---~~~~~Ea~~l~~~-G 512 (539)
...+-.++.|. +++..+.+..+++.+. ..++++.+ ...++.|-++ .+++||+..+++. |
T Consensus 156 v~~G~a~~~~~~~~riv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~G 233 (425)
T PRK15182 156 INPGDKKHRLTNIKKITSGS--TAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLN 233 (425)
T ss_pred CCCCcccccccCCCeEEECC--CHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11111244442 5788899999999986 34566644 2224445443 3788999999988 9
Q ss_pred CCHHHHHHHH
Q 009256 513 VDVFRIDSAI 522 (539)
Q Consensus 513 ~~~~~id~a~ 522 (539)
+|+.++-+++
T Consensus 234 iD~~~v~~a~ 243 (425)
T PRK15182 234 IDTEAVLRAA 243 (425)
T ss_pred cCHHHHHHHh
Confidence 9999998887
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=136.97 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=119.0
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+||| +|.||.++|..|.++|++|++||++++........ .| +..+++. +.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~----------~g-------------v~~~~~~~e~~~ 57 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE----------LG-------------VEYANDNIDAAK 57 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH----------cC-------------CeeccCHHHHhc
Confidence 3799997 79999999999999999999999998765433211 11 2233344 5678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccCCCCcEEEeccCCCC----CCCCeeeeec
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPA----HVMPLLEIVR 460 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~~~~r~vg~h~~~p~----~~~~~vei~~ 460 (539)
+||+||.|+|. .....++.++.+.++++++|++.+|. .+...+....+...++++.||+..| ..+..+.+++
T Consensus 58 ~aDvVIlavp~--~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p 135 (437)
T PRK08655 58 DADIVIISVPI--NVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTP 135 (437)
T ss_pred cCCEEEEecCH--HHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEec
Confidence 99999999994 44568889999999999998877763 4445566655555689999986544 3456677888
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+..++++.++.+.++++.+|..++.+.
T Consensus 136 ~~~~~~~~~~~v~~ll~~~G~~v~~~~ 162 (437)
T PRK08655 136 TEKRSNPWFDKVKNFLEKEGARVIVTS 162 (437)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 888899999999999999999998874
|
|
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-13 Score=123.84 Aligned_cols=129 Identities=18% Similarity=0.284 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcCccc
Q 009256 31 PIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (539)
Q Consensus 31 ~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~ 110 (539)
.+.+.+.+.|+.+..++.+ .+.|.+.|+ ++. ....+. +.|..++||||+.++|.|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~inspGG------~~~----------------~~~~i~-~~i~~~~~pvi~~v~g~a~ 70 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSPGG------DVF----------------AGLAIY-NALKRHKGKVTVKIDGLAA 70 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECCCC------CHH----------------HHHHHH-HHHHhcCCCEEEEEcchHH
Confidence 5677888889988877444 344444332 221 112455 6688999999999999999
Q ss_pred cchhHhhhccCEEEeeCCceEeCCcccCCCCCCcc---------------hhhccccccC--HHHHHHHHHcCCCCCHHH
Q 009256 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG---------------GTQRLPRLVG--LSKAIEMMLLSKSITSEE 173 (539)
Q Consensus 111 GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g---------------~~~~l~r~vG--~~~a~~l~l~g~~~~a~e 173 (539)
|+|+.++++||+|+++++++|+++....+..+... ....+.+..| .....+++.++..++++|
T Consensus 71 s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~e 150 (160)
T cd07016 71 SAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQE 150 (160)
T ss_pred hHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHH
Confidence 99999999999999999999999877655544322 1233677788 677788888888999999
Q ss_pred HHHcCCccee
Q 009256 174 GWKLGLIDAV 183 (539)
Q Consensus 174 A~~~Glv~~v 183 (539)
|+++||||+|
T Consensus 151 A~~~GliD~v 160 (160)
T cd07016 151 AVELGFADEI 160 (160)
T ss_pred HHHcCCCCcC
Confidence 9999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-12 Score=130.29 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=113.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.+++|+|||+|.||.+++..|.+.|+ +|++||++++..+.+.+ .|.. .....+. +
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~-----------~g~~-----------~~~~~~~~~ 62 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE-----------LGLG-----------DRVTTSAAE 62 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------CCCC-----------ceecCCHHH
Confidence 35789999999999999999999985 89999999987665422 1211 0112233 5
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCCCcEEEeccCCCCCC---------
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPAHV--------- 452 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~~r~vg~h~~~p~~~--------- 452 (539)
.+++||+||+|+|.. ....+++++.++++++++|++.++.. ....+........++++.||+.++..
T Consensus 63 ~~~~aDvViiavp~~--~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~ 140 (307)
T PRK07502 63 AVKGADLVILCVPVG--ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAE 140 (307)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHH
Confidence 578999999999953 45677888888888888876544432 12233344444458999999875432
Q ss_pred ---CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 453 ---MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 453 ---~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+..+.+++...++++.++.+.++++.+|..++++.
T Consensus 141 l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~~~~ 178 (307)
T PRK07502 141 LFENRWCILTPPEGTDPAAVARLTAFWRALGARVEEMD 178 (307)
T ss_pred HHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 12345667777889999999999999999998875
|
|
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=123.61 Aligned_cols=154 Identities=26% Similarity=0.335 Sum_probs=108.2
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH
Q 009256 15 VAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (539)
Q Consensus 15 v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (539)
|++|+++.+ ++ ...++|.++|+.+..|+++++|||++. |.|+++... .++. ++|
T Consensus 2 v~vi~i~g~----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~----------------~~l~-~~i 55 (207)
T TIGR00706 2 IAILPVSGA----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS----------------EEIY-EKL 55 (207)
T ss_pred EEEEEEEEE----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH----------------HHHH-HHH
Confidence 566666654 11 235789999999999999999999974 677766432 2344 557
Q ss_pred HhCC--CcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCccc------------CCCCCC---------cc-----h
Q 009256 95 EDCK--KPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FG-----G 146 (539)
Q Consensus 95 ~~~~--~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g-----~ 146 (539)
.+++ |||||.++|.|.|+|+.|+++||.+++++++.|+...+. +|+-+. .+ .
T Consensus 56 ~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~ 135 (207)
T TIGR00706 56 KKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTREL 135 (207)
T ss_pred HHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCC
Confidence 7776 999999999999999999999999999999987653332 333210 00 0
Q ss_pred h----hcc-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 009256 147 T----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (539)
Q Consensus 147 ~----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (539)
+ ..+ .|.+......+ ++.|+.+++++|++.||||++...+++.+...+
T Consensus 136 s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 136 TPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKK-FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 001 12223233333 468899999999999999999988877655544
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=128.12 Aligned_cols=152 Identities=11% Similarity=0.013 Sum_probs=110.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-C
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~ 386 (539)
++|+|||+|.||.+++..|.+.|++|++||+++.. +.+. +.| +...++. +.+ .
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~~~~~e~~~~ 91 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAA-----------ELG-------------VSFFRDPDDFCEE 91 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHH-----------HcC-------------CeeeCCHHHHhhC
Confidence 58999999999999999999999999999998632 2111 111 1122333 333 4
Q ss_pred CcCEEEEcccCChhHHHHHHHHH-HHhCCCCeEEEecCC--CCChHHHhhccCCCCcEEEeccCCCCCCC------Ceee
Q 009256 387 DVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTS--TIDLNIVGEKTSSQDRIIGAHFFSPAHVM------PLLE 457 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l-~~~~~~~~ii~s~ts--~~~~~~i~~~~~~~~r~vg~h~~~p~~~~------~~ve 457 (539)
++|+||+|+|. .....+++++ ..+++++++|++.+| +.+...+...++...++++.||+.++... ..+-
T Consensus 92 ~aDvVilavp~--~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~ 169 (304)
T PLN02256 92 HPDVVLLCTSI--LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFV 169 (304)
T ss_pred CCCEEEEecCH--HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEE
Confidence 69999999994 4567778888 567889999988777 35556666666555579999998877543 1111
Q ss_pred eecC----CCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 458 IVRT----ERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 458 i~~~----~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.+. +.++++.++.++++++.+|.+++.+.
T Consensus 170 ~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~~~ 203 (304)
T PLN02256 170 YDKVRIGDEGEREARCERFLDIFEEEGCRMVEMS 203 (304)
T ss_pred EecceecCCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence 1221 56788999999999999999999884
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-12 Score=129.69 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=126.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|+||+|||+|.||..+|..|+++|++|++||++++.++.+.+..... ... .+ .. ....+...++. +.++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~-~~-~~------~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENP--RYL-PG-IK------LPDNLRATTDLAEALA 70 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCccc--ccC-CC-Cc------CCCCeEEeCCHHHHHh
Confidence 35899999999999999999999999999999998877664321000 000 00 00 00123344555 4678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-------HHhhccCC--CCcEEEeccCCC----CCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-------IVGEKTSS--QDRIIGAHFFSP----AHVM 453 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-------~i~~~~~~--~~r~vg~h~~~p----~~~~ 453 (539)
+||+||.|+|. ...+.++.++.+++++++++++.++++... .+.+.... +..++.. |..+ ....
T Consensus 71 ~~D~vi~~v~~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~-P~~~~~~~~g~~ 147 (325)
T PRK00094 71 DADLILVAVPS--QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSG-PSFAKEVARGLP 147 (325)
T ss_pred CCCEEEEeCCH--HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEEC-ccHHHHHHcCCC
Confidence 99999999995 456788888998888898888776555542 22222221 1111111 1110 0111
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc---------------------hhhcc----hHHHHHHHHHH
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF---------------------AVNRA----FFPYSQSARLL 508 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~---------------------v~nrl----~~~~~~Ea~~l 508 (539)
.++.+.. .+.+.++++.++++..|..+++..+..|. +.|+. ....++|++.+
T Consensus 148 ~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~l 224 (325)
T PRK00094 148 TAVVIAS---TDEELAERVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRL 224 (325)
T ss_pred cEEEEEe---CCHHHHHHHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH
Confidence 2233322 27889999999999999887776554331 12333 23455699999
Q ss_pred HHc-CCCHHHHHHHH
Q 009256 509 VSL-GVDVFRIDSAI 522 (539)
Q Consensus 509 ~~~-G~~~~~id~a~ 522 (539)
++. |++++.+....
T Consensus 225 a~~~G~d~~~~~~~~ 239 (325)
T PRK00094 225 GVALGANPETFLGLA 239 (325)
T ss_pred HHHhCCChhhhhccc
Confidence 977 99988886654
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=122.02 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=110.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+|+|||+|.||.+++..|.++|+ +|++||+++++.+.+.+.. ..+..+.+. +.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~----------------------~g~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY----------------------PGIHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc----------------------CCeEEECCHHHH
Confidence 69999999999999999999984 7999999998766542210 012233344 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCee-eeecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL-EIVRTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~v-ei~~~~~ 463 (539)
+.++|+||.|+| +.....+++++.++++++.+|++.+++++...+...+. .+++..+|..+......+ -++.++.
T Consensus 60 ~~~aDiVilav~--p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~ 135 (273)
T PRK07680 60 ISQSDLIFICVK--PLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSR 135 (273)
T ss_pred HHhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCC
Confidence 789999999997 55567788888888888888889898898888887664 245555554332221222 2345666
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+++..+.+++++..+|. ++.+.+
T Consensus 136 ~~~~~~~~~~~ll~~~G~-~~~i~e 159 (273)
T PRK07680 136 CSEEDQQKLERLFSNIST-PLVIEE 159 (273)
T ss_pred CCHHHHHHHHHHHHcCCC-EEEECh
Confidence 688889999999999995 555543
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.1e-12 Score=121.86 Aligned_cols=152 Identities=15% Similarity=0.149 Sum_probs=125.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
++||+|||+|+||.+|+..|.++| .+|++.++++++.+.+.+++ +... +++.
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~----------------------g~~~-~~~~~ 57 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY----------------------GVVT-TTDNQ 57 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc----------------------CCcc-cCcHH
Confidence 358999999999999999999999 59999999999877543321 1222 3343
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee-cC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RT 461 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~-~~ 461 (539)
+.+..+|+||+|+. +.....++.++.+ ..++.+|+|...+++++.+...+. ..+++...|+.|...+..+..+ .+
T Consensus 58 ~~~~~advv~LavK--Pq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~ 133 (266)
T COG0345 58 EAVEEADVVFLAVK--PQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISAN 133 (266)
T ss_pred HHHhhCCEEEEEeC--hHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecC
Confidence 67788999999995 6778888888887 778889999999999999999887 6789999999988887777655 55
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
...+++..+.+..+|+.+|+...+-
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~v~~v~ 158 (266)
T COG0345 134 ANVSEEDKAFVEALLSAVGKVVEVE 158 (266)
T ss_pred ccCCHHHHHHHHHHHHhcCCeEEec
Confidence 7889999999999999999876554
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-12 Score=133.66 Aligned_cols=200 Identities=17% Similarity=0.209 Sum_probs=133.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
++||+|||+|.+|..+|..|+++ |++|++||+++++++.+.+.. +..+..++..+ .-.+++++++
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~---------~~~~l~~t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQC---------RGKNLFFSTD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHh---------hcCCEEEEcC
Confidence 35899999999999999999998 478999999999998875432 11222222211 1124788888
Q ss_pred c-cCCCCcCEEEEcccCC-------------hhHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhcc---------
Q 009256 382 Y-SEFKDVDMVIEAVIES-------------VPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKT--------- 435 (539)
Q Consensus 382 ~-~~~~~aDlVi~avpe~-------------~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~--------- 435 (539)
+ +++++||++|+|||.. ......+.++|.++++++.+|+. .|+.++. .+...+
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~-~STvp~Gtt~~~~~~l~~~~~g~~f 150 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVE-KSTVPVKTAEAIEKILTHNSKGINF 150 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEE-eCCCCCChHHHHHHHHHhhCCCCCe
Confidence 7 5799999999999633 33567778889999999887764 3344433 222211
Q ss_pred ---CCCCcEEEec----cCCCCCCCCeeeeecCCC--CcHHHHHHHHHHHHHcCc-eeEEEc-----Ccccchhhcch--
Q 009256 436 ---SSQDRIIGAH----FFSPAHVMPLLEIVRTER--TSAQVILDLMTVGKIIKK-VPVVVG-----NCTGFAVNRAF-- 498 (539)
Q Consensus 436 ---~~~~r~vg~h----~~~p~~~~~~vei~~~~~--t~~e~~~~~~~l~~~lg~-~~v~v~-----~~~g~v~nrl~-- 498 (539)
..|+++.-.. +.+|+.+ |+++.. +.+++.+.++.++..+-+ .++.+. +...++.|.+.
T Consensus 151 ~v~~~PErl~~G~a~~d~~~p~ri-----ViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~ 225 (473)
T PLN02353 151 QILSNPEFLAEGTAIEDLFKPDRV-----LIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQ 225 (473)
T ss_pred EEEECCCccCCCCcccccCCCCEE-----EEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHH
Confidence 1222221111 2344432 445532 236788999999998753 455543 34456667553
Q ss_pred -HHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 499 -FPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 499 -~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
.+++||...+++. |+++.+|-+++
T Consensus 226 ~Iaf~NEla~lce~~giD~~eV~~~~ 251 (473)
T PLN02353 226 RISSVNAMSALCEATGADVSQVSHAV 251 (473)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 4889999999988 99999999998
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=123.20 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=125.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||.++|..|...|++|++++++.++.....+ +.| +... +. +.++.
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~----------~~G-------------~~~~-s~~eaa~~ 73 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAE----------ADG-------------FEVL-TVAEAAKW 73 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHH----------HCC-------------CeeC-CHHHHHhc
Confidence 58999999999999999999999999999887554322211 111 2222 33 67889
Q ss_pred cCEEEEcccCChhHHHHHH-HHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCC-------CCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH-------VMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~-~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~-------~~~~vei~ 459 (539)
||+|+.++|+... ..++ +++.+.++++++| +..++..+.......+...+++-..|..|.+ .+..+...
T Consensus 74 ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l 150 (330)
T PRK05479 74 ADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-AFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCL 150 (330)
T ss_pred CCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-EECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEE
Confidence 9999999995543 5676 7799999999887 7788888887765555555788888888887 44333322
Q ss_pred --cCCCCcHHHHHHHHHHHHHcCceeE-----EEcCcc--cc------hhhcchHHHHHHHHHHH-HcCCCHHH
Q 009256 460 --RTERTSAQVILDLMTVGKIIKKVPV-----VVGNCT--GF------AVNRAFFPYSQSARLLV-SLGVDVFR 517 (539)
Q Consensus 460 --~~~~t~~e~~~~~~~l~~~lg~~~v-----~v~~~~--g~------v~nrl~~~~~~Ea~~l~-~~G~~~~~ 517 (539)
.....+.+..+.+..++..+|..+. ..++.. -+ +.|- +..++..++..+ +.|++|+.
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg-~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGG-LTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhH-HHHHHHHHHHHHHHcCCCHHH
Confidence 3445568999999999999998865 333322 11 2222 234555555554 55998864
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=119.53 Aligned_cols=203 Identities=17% Similarity=0.153 Sum_probs=134.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHH---HHHHhhcccccCCccCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDK---ANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~ 385 (539)
.+|+|||+|.+|.++|..++++|++|+++|+|+.+++.+....... .+ .+.++ .....++++.+++.+.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i----~e---~~~~~~v~~~v~~g~lraTtd~~~l 82 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYI----EE---PDLDEVVKEAVESGKLRATTDPEEL 82 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCccee----ec---CcHHHHHHHHHhcCCceEecChhhc
Confidence 6899999999999999999999999999999999998875421000 00 01111 11222568889999889
Q ss_pred CCcCEEEEcccC--------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhc-------cCCCCcEEEeccCC
Q 009256 386 KDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEK-------TSSQDRIIGAHFFS 448 (539)
Q Consensus 386 ~~aDlVi~avpe--------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~-------~~~~~r~vg~h~~~ 448 (539)
+.||++|+|||. |+.......+.|.++++++.+++.-|++.|-+ ++... +..+..|--.| .
T Consensus 83 ~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay--s 160 (436)
T COG0677 83 KECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY--S 160 (436)
T ss_pred ccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee--C
Confidence 999999999985 56667777888999999999887655554432 22221 22222221111 2
Q ss_pred CCCCCC---ee------eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcc-----cchhhcc---hHHHHHHHHHHHHc
Q 009256 449 PAHVMP---LL------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVNRA---FFPYSQSARLLVSL 511 (539)
Q Consensus 449 p~~~~~---~v------ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~-----g~v~nrl---~~~~~~Ea~~l~~~ 511 (539)
|-+..| +. .+++| .+|+..+.+..|++.+-...+.+.+.. ...=|-. -.++.||-..++++
T Consensus 161 PERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~ 238 (436)
T COG0677 161 PERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNA 238 (436)
T ss_pred ccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 222211 11 24444 489999999999999877766665422 2222321 24788998777766
Q ss_pred -CCCHHHHHHHH
Q 009256 512 -GVDVFRIDSAI 522 (539)
Q Consensus 512 -G~~~~~id~a~ 522 (539)
|++.-++-++-
T Consensus 239 ~GIdvwevIeaA 250 (436)
T COG0677 239 MGIDVWEVIEAA 250 (436)
T ss_pred hCCcHHHHHHHh
Confidence 99766555544
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=9e-12 Score=123.83 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=119.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
|++|+|||+|.||.+++..|.++| ++|++|+++++ +.+..... . .....+.+.
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~----------~------------~~~~~~~~~ 58 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDK----------Y------------PTVELADNE 58 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHH----------c------------CCeEEeCCH
Confidence 468999999999999999999998 78999998753 22222110 0 112223343
Q ss_pred -cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee-c
Q 009256 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-R 460 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~-~ 460 (539)
+.+.++|+||+|+| +.....++.++.++++++.+|+|...+++..++...++. .+++.+.|+.|...+..+..+ .
T Consensus 59 ~e~~~~aDvVilavp--p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~ 135 (277)
T PRK06928 59 AEIFTKCDHSFICVP--PLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAH 135 (277)
T ss_pred HHHHhhCCEEEEecC--HHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEec
Confidence 55789999999999 555778888898888888888999999999999887753 479999998888777776655 5
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEE
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
++..+++..+.++.+|..+|....+
T Consensus 136 ~~~~~~~~~~~v~~l~~~~G~~~~v 160 (277)
T PRK06928 136 AETVNEANKSRLEETLSHFSHVMTI 160 (277)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 6677999999999999999987644
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=119.73 Aligned_cols=179 Identities=11% Similarity=0.096 Sum_probs=122.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCe---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
+|+|||+|.||.+|+..|.+.|++ +.+||+++++.+.+.+.. .......+. +.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~~~~~~~~~ 59 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF----------------------PKVRIAKDNQAVV 59 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc----------------------CCceEeCCHHHHH
Confidence 799999999999999999999864 578999988876653311 112233344 456
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCc
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~ 465 (539)
.+||+||+|+| ++....++.++. +.++.++++...+.+...+...+....+++..+|..|......+..+...
T Consensus 60 ~~aDvVilav~--p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~--- 132 (258)
T PRK06476 60 DRSDVVFLAVR--PQIAEEVLRALR--FRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP--- 132 (258)
T ss_pred HhCCEEEEEeC--HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---
Confidence 88999999999 444566766662 45777888888999999998877655577788887666544444444321
Q ss_pred HHHHHHHHHHHHHcCceeEEEcC--cc------cchhhcchHHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 466 AQVILDLMTVGKIIKKVPVVVGN--CT------GFAVNRAFFPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 466 ~e~~~~~~~l~~~lg~~~v~v~~--~~------g~v~nrl~~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
.+.++++++.+|..++...+ .. ++..| ++.++.++....++ |+++++..+++
T Consensus 133 ---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~a~--~~~~~~~~~~~~~~~Gl~~~~a~~~~ 193 (258)
T PRK06476 133 ---DPFVAALFDALGTAVECDSEEEYDLLAAASALMAT--YFGILETATGWLEEQGLKRQKARAYL 193 (258)
T ss_pred ---HHHHHHHHHhcCCcEEECChHhccceeehhccHHH--HHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 25789999999988764322 11 12222 22345566656554 99988866665
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-11 Score=115.98 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC---e-EEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI---Y-VVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~---~-V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
.||+|||+|.||.+++..+.++|+ + |+++++ ++++.+.+.+.. .+..+++.
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~ 61 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-----------------------NVSTTTDWK 61 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-----------------------CcEEeCChH
Confidence 589999999999999999998873 3 777887 466655543210 12223444
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT 461 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~ 461 (539)
+.+.++|+||.++|. ...+.+++++.++++ +.+|++.+.+++...+...+....+++..||..+...+..+. ++..
T Consensus 62 ~~~~~~DiViiavp~--~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~ 138 (245)
T PRK07634 62 QHVTSVDTIVLAMPP--SAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMG 138 (245)
T ss_pred HHHhcCCEEEEecCH--HHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeC
Confidence 557899999999994 446788888887766 468889999999999988876555778888876665544433 3345
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEE
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
...+++..+.++++++.+|..++.
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 567899999999999999998864
|
|
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.1e-12 Score=119.54 Aligned_cols=148 Identities=22% Similarity=0.222 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
+.-+...+.+|.+.|+++..|+++++|||+..++.| ++.+++++ .+.+ +.+...+|||||.+
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el----------------~~~i-~~~~~~~kpVia~~ 85 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL----------------RQAL-ERFRASGKPVIAYA 85 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH----------------HHHH-HHHHHhCCeEEEEe
Confidence 334577899999999999999999999999988877 66666654 2334 45677899999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCccc------------CCCCCC---------cchhhc-----------c---
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVIPG---------FGGTQR-----------L--- 150 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~~~~-----------l--- 150 (539)
+| |.+||+.|+++||.+++.+++.|+..-+. +|+-+. .+..+. +
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~ 164 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQAL 164 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHH
Confidence 98 88999999999999999999999875332 233221 011110 0
Q ss_pred --------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHH
Q 009256 151 --------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVS 193 (539)
Q Consensus 151 --------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a 193 (539)
.|.+..... +-+..|+.+++++|++.||||++...+++.+..
T Consensus 165 l~~~~~~f~~~Va~~R~~~~~~~-~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~l 220 (222)
T cd07018 165 LDSLWDQYLADVAASRGLSPDAL-EALIDLGGDSAEEALEAGLVDGLAYRDELEARL 220 (222)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHH-HHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHHH
Confidence 111222222 234559999999999999999999888776543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=123.62 Aligned_cols=137 Identities=13% Similarity=0.106 Sum_probs=103.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+ |.||+++|..|.+. |++|++||++.+. ..+. +.+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------------------~~~~~~~v 49 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------------------SLDPATLL 49 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------------------cCCHHHHh
Confidence 48999999 99999999999864 8999999985211 1111 457
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHh---CCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCCC-----CCe
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKA---CPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV-----MPL 455 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~---~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~~-----~~~ 455 (539)
++||+||.|+| ......+++++.++ ++++++|++.+|... +..+. ....+|+|.||+..++. +..
T Consensus 50 ~~aDlVilavP--v~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~---~~~~~fVG~HPMaG~E~s~lf~g~~ 124 (370)
T PRK08818 50 QRADVLIFSAP--IRHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAML---ASQAEVVGLHPMTAPPKSPTLKGRV 124 (370)
T ss_pred cCCCEEEEeCC--HHHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHHH---hcCCCEEeeCCCCCCCCCcccCCCe
Confidence 89999999999 66677888998876 789999987777643 33332 22346999999887753 334
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.+++. ..++.+++++.+++.+|..++.+.
T Consensus 125 ~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~ 154 (370)
T PRK08818 125 MVVCEA--RLQHWSPWVQSLCSALQAECVYAT 154 (370)
T ss_pred EEEeCC--CchhHHHHHHHHHHHcCCEEEEcC
Confidence 445555 345567899999999999998884
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=128.66 Aligned_cols=153 Identities=10% Similarity=0.043 Sum_probs=108.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
.++|+|||+|.||.++|..|.+.|++|++||++... +.+. +.| +...++. +.+.
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~-----------~~G-------------v~~~~~~~el~~ 423 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQ-----------KLG-------------VSYFSDADDLCE 423 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHH-----------HcC-------------CeEeCCHHHHHh
Confidence 458999999999999999999999999999998542 2211 111 1223344 3343
Q ss_pred -CcCEEEEcccCChhHHHHHHHHHHH-hCCCCeEEEecCCC--CChHHHhhccCCCCcEEEeccCCCCCCCC--------
Q 009256 387 -DVDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTST--IDLNIVGEKTSSQDRIIGAHFFSPAHVMP-------- 454 (539)
Q Consensus 387 -~aDlVi~avpe~~~~~~~~~~~l~~-~~~~~~ii~s~ts~--~~~~~i~~~~~~~~r~vg~h~~~p~~~~~-------- 454 (539)
.||+||.|+| ......++.++.. .++++++|++.+|+ .+...+....+...++++.||+.++....
T Consensus 424 ~~aDvVILavP--~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~ 501 (667)
T PLN02712 424 EHPEVILLCTS--ILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAF 501 (667)
T ss_pred cCCCEEEECCC--hHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhh
Confidence 5899999999 4456677777765 57889999887776 44555555555555799999988876531
Q ss_pred ee--eeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 455 LL--EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 455 ~v--ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
++ -++.++....+.++.+.+++..+|.+++.+.
T Consensus 502 lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 502 VFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred hccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 11 1223444566677788899999999998884
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3e-11 Score=121.27 Aligned_cols=148 Identities=12% Similarity=0.092 Sum_probs=111.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||+|+||.++|..|.+.|++|+++++. ++..+.+. +.| +...+..+.+++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-----------~~G-------------v~~~s~~ea~~~ 59 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-----------EDG-------------FKVGTVEEAIPQ 59 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-----------HCC-------------CEECCHHHHHhc
Confidence 47999999999999999999999998876654 33433331 111 222222266789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCC-------CCeee-ee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV-------MPLLE-IV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~-------~~~ve-i~ 459 (539)
||+|+.++|++.. ...+.+++.+.++++. ++|...++++..+...++...+++...|..|.+. +..+. ++
T Consensus 60 ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~ 137 (314)
T TIGR00465 60 ADLIMNLLPDEVQ-HEVYEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLI 137 (314)
T ss_pred CCEEEEeCCcHhH-HHHHHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEE
Confidence 9999999995533 4566677888888876 5678889999988776765567999999999874 65553 43
Q ss_pred -cCCCCcHHHHHHHHHHHHHcCce
Q 009256 460 -RTERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 460 -~~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
.+...+.+..+.+..++..+|..
T Consensus 138 a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 138 AVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCC
Confidence 56667889999999999999988
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.5e-11 Score=123.97 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=118.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||..|+++||+|++|+++++..+.+.+...+.. .+. +.. ...++..++++ +.+++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~--~~~-g~~-------~~~~~~~~~~~~e~~~~ 74 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENRE--YLP-GVA-------LPAELYPTADPEEALAG 74 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccc--cCC-CCc-------CCCCeEEeCCHHHHHcC
Confidence 48999999999999999999999999999999988776643211100 000 100 00123345555 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC-----hHHHhhccCC--CCc--EEEeccCCCCCC---CCe
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-----LNIVGEKTSS--QDR--IIGAHFFSPAHV---MPL 455 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~-----~~~i~~~~~~--~~r--~vg~h~~~p~~~---~~~ 455 (539)
||+||+++|++. .++ +.+.++++.++++.++++. ...++..+.. ..+ +++ .|..+... .+.
T Consensus 75 aD~Vi~~v~~~~--~~~----v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~~ 147 (328)
T PRK14618 75 ADFAVVAVPSKA--LRE----TLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLPA 147 (328)
T ss_pred CCEEEEECchHH--HHH----HHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCCe
Confidence 999999999663 233 3355667777777777654 2233333321 011 222 11111111 012
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc----------------c-----hhhcc----hHHHHHHHHHHHH
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------F-----AVNRA----FFPYSQSARLLVS 510 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g----------------~-----v~nrl----~~~~~~Ea~~l~~ 510 (539)
..++.+ .+++.+++++++++..|..+++..|..| . +.|++ ....+.|+..+++
T Consensus 148 ~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~ 225 (328)
T PRK14618 148 ATVVAS--PEPGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGV 225 (328)
T ss_pred EEEEEe--CCHHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 222222 3788999999999999988875433222 1 11222 2344569999997
Q ss_pred c-CCCHHHHHHHH
Q 009256 511 L-GVDVFRIDSAI 522 (539)
Q Consensus 511 ~-G~~~~~id~a~ 522 (539)
. |++++.+....
T Consensus 226 ~~G~~~~~~~~~~ 238 (328)
T PRK14618 226 ALGAEEATFYGLS 238 (328)
T ss_pred HhCCCccchhcCc
Confidence 7 99988877665
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=122.21 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=114.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||+++|..|+++||+|++|.++++.++++.+.. .-.+++..-.+. ..+.+++|+ +++++
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~--~N~~yLp~i~lp--------~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETR--ENPKYLPGILLP--------PNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcC--cCccccCCccCC--------cccccccCHHHHHhc
Confidence 5899999999999999999999999999999999988876541 112233322222 467888888 77888
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH------HHh-hccCCCCcEEEeccCCCCCC-------C
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IVG-EKTSSQDRIIGAHFFSPAHV-------M 453 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~------~i~-~~~~~~~r~vg~h~~~p~~~-------~ 453 (539)
||+|+.++| .+..+.+++++..++++++++++.++++... ++. +.++. ..+ + +...|.. .
T Consensus 72 ad~iv~avP--s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~-~~~-~--vLSGPs~A~EVa~g~ 145 (329)
T COG0240 72 ADIIVIAVP--SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPD-NPI-A--VLSGPSFAKEVAQGL 145 (329)
T ss_pred CCEEEEECC--hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCC-CeE-E--EEECccHHHHHhcCC
Confidence 999999999 6668899999988899999999888877654 222 22221 111 1 1222211 1
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
+...++.+ .+++..+.++.+|..=..+++...|..|
T Consensus 146 pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~~Dv~G 181 (329)
T COG0240 146 PTAVVVAS--NDQEAAEKVQALFSSPYFRVYTSTDVIG 181 (329)
T ss_pred CcEEEEec--CCHHHHHHHHHHhCCCcEEEEecCchhh
Confidence 12122222 3788888888888875666666677655
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-11 Score=123.81 Aligned_cols=181 Identities=13% Similarity=0.061 Sum_probs=122.0
Q ss_pred CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC---CCCcCEEEEc
Q 009256 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE---FKDVDMVIEA 394 (539)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~---~~~aDlVi~a 394 (539)
||..||.+|+++||+|++|||++++.+.+.+.. +. . ..+....++ +. ++.+|+||.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~----------g~-~--------~g~~~~~s~~e~v~~l~~~~~Ii~m 61 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEE----------GK-G--------KKIVPAYTLEEFVASLEKPRKILLM 61 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh----------CC-C--------CCeEeeCCHHHHHhhCCCCCEEEEE
Confidence 899999999999999999999999988764310 10 0 113334444 32 3358999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH--hhccC-CCCcEEEeccCCCC---CCCCeeeeecCCCCcHHH
Q 009256 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV--GEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRTERTSAQV 468 (539)
Q Consensus 395 vpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i--~~~~~-~~~r~vg~h~~~p~---~~~~~vei~~~~~t~~e~ 468 (539)
+|.+..+. .++..+.+++.++.+|++.+++.+.... ...+. ..-+|+++.....+ ..++ .-++.| ++++
T Consensus 62 v~~g~~v~-~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG---~~~a 136 (459)
T PRK09287 62 VKAGAPVD-AVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGG---QKEA 136 (459)
T ss_pred CCCchHHH-HHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeC---CHHH
Confidence 99876655 4557888999999999877765554432 22232 22234444332222 2233 334455 8999
Q ss_pred HHHHHHHHHHcCcee-------EEEcCc-ccc----hhhcchHHH---HHHHHHHHH-c-CCCHHHHHHHHH
Q 009256 469 ILDLMTVGKIIKKVP-------VVVGNC-TGF----AVNRAFFPY---SQSARLLVS-L-GVDVFRIDSAIR 523 (539)
Q Consensus 469 ~~~~~~l~~~lg~~~-------v~v~~~-~g~----v~nrl~~~~---~~Ea~~l~~-~-G~~~~~id~a~~ 523 (539)
++.++++++.++.++ .++++. .|. +.|-+.+.. +.|++.+++ . |++++++-+++.
T Consensus 137 ~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~ 208 (459)
T PRK09287 137 YELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFA 208 (459)
T ss_pred HHHHHHHHHHHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999999999999886 788763 332 335554443 459999998 3 899999888873
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=130.57 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=116.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+++|+|||+|.||.+++..+.+.| ++|++||+++++++.+.+ .|... ...++. +.
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~-----------~g~~~-----------~~~~~~~~~ 60 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS-----------LGVID-----------RGEEDLAEA 60 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH-----------CCCCC-----------cccCCHHHH
Confidence 578999999999999999999998 489999999887665422 12110 112233 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccC-CCCcEEEeccCCCCC----------
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS-SQDRIIGAHFFSPAH---------- 451 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~-~~~r~vg~h~~~p~~---------- 451 (539)
+.++|+||+|+|. .....+++++.++++++++|++.++.. ....+...+. .+.|+++.||+..+.
T Consensus 61 ~~~aDvVilavp~--~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~ 138 (735)
T PRK14806 61 VSGADVIVLAVPV--LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANAD 138 (735)
T ss_pred hcCCCEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhH
Confidence 7899999999994 467888899999888888776544432 2445555443 356899999975332
Q ss_pred --CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 452 --~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
..+.+.+++...++++.++.++++++.+|..++++.
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~ 176 (735)
T PRK14806 139 LFRNHKVILTPLAETDPAALARVDRLWRAVGADVLHMD 176 (735)
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 234456788888899999999999999999998884
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-11 Score=119.57 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=110.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||..|+++||+|++|+|++.. ++ +.+++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------------------------------------~~~~~~~~ 47 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------------------------------------SLAAVLAD 47 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------------------------------------CHHHHHhc
Confidence 47999999999999999999999999999998530 11 44678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEEecCCCCChHHH-------hhccCCCCcEEEeccCCCCC-------C
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIV-------GEKTSSQDRIIGAHFFSPAH-------V 452 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~s~ts~~~~~~i-------~~~~~~~~r~vg~h~~~p~~-------~ 452 (539)
+|+||.++|.+ ..+.+++++.++ ++++++++++++++.+... ...... .+++.+ ..|.. .
T Consensus 48 advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~-~~v~~i--~gp~~a~ei~~~~ 122 (308)
T PRK14619 48 ADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPN-HPVVVL--SGPNLSKEIQQGL 122 (308)
T ss_pred CCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCC-CceEEE--ECCCcHHHHhcCC
Confidence 99999999963 566777888764 6788888887765554321 111111 122210 11110 0
Q ss_pred CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc---------------------hhhcch----HHHHHHHHH
Q 009256 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF---------------------AVNRAF----FPYSQSARL 507 (539)
Q Consensus 453 ~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~---------------------v~nrl~----~~~~~Ea~~ 507 (539)
...+-++.+ +.+.++.+++++...+..+++.+|..|- +.|+.. ...+.|++.
T Consensus 123 ~~~~~~ag~---~~~~~~~v~~ll~~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~ 199 (308)
T PRK14619 123 PAATVVASR---DLAAAETVQQIFSSERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIR 199 (308)
T ss_pred CeEEEEEeC---CHHHHHHHHHHhCCCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH
Confidence 112222233 7899999999999999888876664441 223332 234469999
Q ss_pred HHHc-CCCHHHHHH
Q 009256 508 LVSL-GVDVFRIDS 520 (539)
Q Consensus 508 l~~~-G~~~~~id~ 520 (539)
+++. |++++.+..
T Consensus 200 l~~~~G~~~~t~~~ 213 (308)
T PRK14619 200 VGTHLGAQTETFYG 213 (308)
T ss_pred HHHHhCCCcccccc
Confidence 9977 887765533
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=109.69 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=107.7
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+||| +|.||.+++..|+++|++|+++++++++.+...+..... ....+ .. ..+..+++.+++++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~---~~~~g-~~--------~~~~~~~~~ea~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEE---LGHGG-SD--------IKVTGADNAEAAKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhh---ccccC-CC--------ceEEEeChHHHHhc
Confidence 3799997 899999999999999999999999998877654432110 00001 00 01122233367889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-----------------HHHhhccCCCCcEEEeccCCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-----------------NIVGEKTSSQDRIIGAHFFSPA 450 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-----------------~~i~~~~~~~~r~vg~h~~~p~ 450 (539)
+|+||.|+| ......+++++.+.++. ++|++.+.++.. ..++..++...+++...++.+.
T Consensus 69 aDvVilavp--~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a 145 (219)
T TIGR01915 69 ADVVILAVP--WDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSA 145 (219)
T ss_pred CCEEEEECC--HHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCH
Confidence 999999998 55566777778776654 778787777665 2345555432567776543322
Q ss_pred CCC-------CeeeeecCCCCcHHHHHHHHHHHHHc-CceeEEEcC
Q 009256 451 HVM-------PLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (539)
Q Consensus 451 ~~~-------~~vei~~~~~t~~e~~~~~~~l~~~l-g~~~v~v~~ 488 (539)
... +....+.|+ ++++.+.+..|.+.+ |..|+.++.
T Consensus 146 ~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~~~G~~~vd~G~ 189 (219)
T TIGR01915 146 VLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGRIDGLRALDAGP 189 (219)
T ss_pred HHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHhcCCCCcccCCc
Confidence 111 111233443 677899999999999 999988875
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-10 Score=116.73 Aligned_cols=196 Identities=10% Similarity=0.046 Sum_probs=119.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++||+|||+|.||..+|..|+++|++|++||+++. .+...+. . ......+..+......++..+++.+.+.+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~---g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAH---G----LTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhc---C----ceeecCCCcceecccceeEeccChhhccC
Confidence 45899999999999999999999999999999653 2322110 0 00000000000000123444555567789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhhccCCCCcEEEeccCC----CCCC---CCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFS----PAHV---MPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~i~~~~~~~~r~vg~h~~~----p~~~---~~~vei~ 459 (539)
+|+||+|++... ...+++++.++++++++|++.++++.. ..++..+.....+.+.+++. +|.. ...-.+.
T Consensus 74 ~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~ 151 (341)
T PRK08229 74 ADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALA 151 (341)
T ss_pred CCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceE
Confidence 999999998543 467788899999999988887777764 34555554322233333321 1110 0000111
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcCccc-----chhhcc--h---------------------HHHHHHHHHHHHc
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNRA--F---------------------FPYSQSARLLVSL 511 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g-----~v~nrl--~---------------------~~~~~Ea~~l~~~ 511 (539)
-+ +.+.++++.++++..|..+.+.+|..+ ++.|-+ + ...+.|++.+++.
T Consensus 152 ~~---~~~~~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a 228 (341)
T PRK08229 152 IE---ASPALRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKA 228 (341)
T ss_pred ec---CCchHHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 12 124568899999999988888887543 344421 1 1445688888866
Q ss_pred -CCCHH
Q 009256 512 -GVDVF 516 (539)
Q Consensus 512 -G~~~~ 516 (539)
|++++
T Consensus 229 ~Gi~~~ 234 (341)
T PRK08229 229 AGIRPA 234 (341)
T ss_pred cCCCcc
Confidence 88653
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.3e-10 Score=109.59 Aligned_cols=143 Identities=16% Similarity=0.151 Sum_probs=110.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|+||++|+..|.++|. +++++|+++++.. .....+. +.
T Consensus 5 kI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~------------------------------~~~~~~~~~~ 54 (260)
T PTZ00431 5 RVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP------------------------------FVYLQSNEEL 54 (260)
T ss_pred EEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC------------------------------eEEeCChHHH
Confidence 79999999999999999999873 4999998865310 0112222 45
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~~~ 463 (539)
+.+||+||.|+| +.....+++++.++++++ +|+|..+++..+.+...++...+++...|..|...+..+. +++...
T Consensus 55 ~~~~D~Vilavk--p~~~~~vl~~i~~~l~~~-~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~ 131 (260)
T PTZ00431 55 AKTCDIIVLAVK--PDLAGKVLLEIKPYLGSK-LLISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNN 131 (260)
T ss_pred HHhCCEEEEEeC--HHHHHHHHHHHHhhccCC-EEEEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCC
Confidence 678999999998 666889999998887764 5678888999988887766555677788877776665544 456667
Q ss_pred CcHHHHHHHHHHHHHcCceeEE
Q 009256 464 TSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
.+++..+.++.+|+.+|...++
T Consensus 132 ~~~~~~~~v~~l~~~~G~~~~v 153 (260)
T PTZ00431 132 VDSTDKKKVIDIFSACGIIQEI 153 (260)
T ss_pred CCHHHHHHHHHHHHhCCcEEEE
Confidence 7889999999999999987754
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.9e-12 Score=132.79 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=117.6
Q ss_pred eEEEEcCCCCcHHHHH--HH----HHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 310 KVAVIGGGLMGSGIAT--AH----ILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~--~l----~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
||+|||+|.||.+++. .+ ..+|++|++||++++.++.....+...+. ..... .++..++|+
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~----~~~~~--------~~I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVE----ELGAP--------LKIEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH----hcCCC--------eEEEEeCCHH
Confidence 7999999999998766 34 44588999999999998887665533322 11111 357778887
Q ss_pred cCCCCcCEEEEccc----------CChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCC--CCcEEEeccCCCC
Q 009256 383 SEFKDVDMVIEAVI----------ESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS--QDRIIGAHFFSPA 450 (539)
Q Consensus 383 ~~~~~aDlVi~avp----------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~--~~r~vg~h~~~p~ 450 (539)
+++++||+||++++ ++..+|..+++++.+.+++++++.+++|...+.+++..+.. | +.+.+||.||+
T Consensus 70 eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv 148 (423)
T cd05297 70 EALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPM 148 (423)
T ss_pred HHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChH
Confidence 78999999999998 35788888999999999999999999999888888877653 6 88999999999
Q ss_pred CCC-----CeeeeecCCCCcHHHHHHHHHHHHHcCce
Q 009256 451 HVM-----PLLEIVRTERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 451 ~~~-----~~vei~~~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
..+ +..+ ...-++..........+.+.+|..
T Consensus 149 ~i~t~~~~k~~~-~rviG~c~~~~~~~~~~a~~l~~~ 184 (423)
T cd05297 149 AELTWALNRYTP-IKTVGLCHGVQGTAEQLAKLLGEP 184 (423)
T ss_pred HHHHHHHHHhCC-CCEEEECCcHHHHHHHHHHHhCCC
Confidence 654 2222 122222323555666777778864
|
linked to 3D####ucture |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=104.46 Aligned_cols=145 Identities=26% Similarity=0.355 Sum_probs=101.4
Q ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 16 AIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 16 ~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
..|+++. .+++...+.+.++|+++.+++ ++.|++.=. |.|+++. ....++ +.|.
T Consensus 2 ~vi~i~g----~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~----------------~~~~I~-~~l~ 55 (178)
T cd07021 2 YVIPIEG----EIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVD----------------SALEIV-DLIL 55 (178)
T ss_pred EEEEEee----EECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHH----------------HHHHHH-HHHH
Confidence 4555554 366778888999999998876 677777422 1122221 123455 6789
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchh--------hc------cccccC--HHHH
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT--------QR------LPRLVG--LSKA 159 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~--------~~------l~r~vG--~~~a 159 (539)
.+++|||+.|+|.|.++|+.++++||++++++++.|+.++. ++..|+. .. +...-| ...+
T Consensus 56 ~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~----v~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~~~a 131 (178)
T cd07021 56 NSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEP----IPGDGNGAADEKVQSYWRAKMRAAAEKKGRDPDIA 131 (178)
T ss_pred hCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCee----EcCCCccchhHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999998844 3333331 00 111112 3445
Q ss_pred HHHHHcC-------------CCCCHHHHHHcCCcceecCc-chHH
Q 009256 160 IEMMLLS-------------KSITSEEGWKLGLIDAVVTS-EELL 190 (539)
Q Consensus 160 ~~l~l~g-------------~~~~a~eA~~~Glv~~vv~~-~~l~ 190 (539)
..|+-.. -.++++||++.|++|.+.+. ++|.
T Consensus 132 ~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 132 EAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred HHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHh
Confidence 5555544 37999999999999999854 4443
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=100.79 Aligned_cols=154 Identities=19% Similarity=0.192 Sum_probs=105.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
|++++|+|.|+||+++|..|++.||+|++-.++.+ +.+...+.+. ..++..+..++++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~---------------------~~i~~~~~~dA~~ 59 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG---------------------PLITGGSNEDAAA 59 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc---------------------cccccCChHHHHh
Confidence 56899999999999999999999999999966544 4444433221 2345555558889
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC----------------hH-HHhhccCCCCcEEEe-c---
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID----------------LN-IVGEKTSSQDRIIGA-H--- 445 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~----------------~~-~i~~~~~~~~r~vg~-h--- 445 (539)
.||+||.++| ......+.+++.+.+. +.||++.+..+. .+ .+++.++.+ +++.. |
T Consensus 60 ~aDVVvLAVP--~~a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~ 135 (211)
T COG2085 60 LADVVVLAVP--FEAIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIP 135 (211)
T ss_pred cCCEEEEecc--HHHHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccC
Confidence 9999999999 6667788899988776 677877665421 11 233344433 33322 1
Q ss_pred ---cCCCCCC-CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 446 ---FFSPAHV-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 446 ---~~~p~~~-~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
+-+-++. .+..-.++++ |.++.+.+.+|.+.+|..++-++.
T Consensus 136 a~~l~~~~~~~~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~ld~G~ 180 (211)
T COG2085 136 AAVLADLAKPGGRRDVLVAGD--DAEAKAVVAELAEDIGFRPLDAGP 180 (211)
T ss_pred HHHhccCCCcCCceeEEEecC--cHHHHHHHHHHHHhcCcceeeccc
Confidence 1111122 3333344443 788999999999999999999875
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-11 Score=109.96 Aligned_cols=105 Identities=23% Similarity=0.225 Sum_probs=77.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
||+|||+|.||.++|..|+++|++|++|.++++.++.+.+...+ ...+... .....+..++|+ ++++++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n-------~~~~~~~---~l~~~i~~t~dl~~a~~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQN-------PKYLPGI---KLPENIKATTDLEEALEDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSE-------TTTSTTS---BEETTEEEESSHHHHHTT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCC-------CCCCCCc---ccCcccccccCHHHHhCcc
Confidence 79999999999999999999999999999999888776543110 0001000 001356678888 778999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
|+||.++| ....+.+++++.+++++++++++.+.++
T Consensus 71 d~IiiavP--s~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 71 DIIIIAVP--SQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp SEEEE-S---GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cEEEeccc--HHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 99999999 5557899999999999999999888887
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-10 Score=107.67 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=75.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||+|.+|.++|..|+++||+|++||+|+++++.+.+.. +..++.++++. ...++++++++. +
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~--------~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKEN--------VSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHH--------HHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccc--------cccccchhhhhhhh
Confidence 5899999999999999999999999999999999988876431 11111111110 012577888888 5
Q ss_pred CCCCcCEEEEcccC--------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 384 ~~~~aDlVi~avpe--------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
++.+||++|+|||. |......+.+.|.++++++.+|+- .|++++.
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~-~STvppG 125 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI-ESTVPPG 125 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE-SSSSSTT
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE-ccEEEEe
Confidence 58999999999975 445677888899999999988764 4455544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=107.67 Aligned_cols=141 Identities=17% Similarity=0.138 Sum_probs=101.7
Q ss_pred HHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccCChh
Q 009256 323 IATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVP 400 (539)
Q Consensus 323 iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe~~~ 400 (539)
+|+.|.++| ++|++||++++.++.+ .+.|..+. ..++.+.+++||+||.|+| +.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a-----------~~~g~~~~-----------~~~~~~~~~~~DlvvlavP--~~ 56 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAA-----------LELGIIDE-----------ASTDIEAVEDADLVVLAVP--VS 56 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHH-----------HHTTSSSE-----------EESHHHHGGCCSEEEE-S---HH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHH-----------HHCCCeee-----------ccCCHhHhcCCCEEEEcCC--HH
Confidence 578899998 7999999999987776 23343321 1111467899999999999 77
Q ss_pred HHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCCCcEEEeccCCCC------------CCCCeeeeecCCCCcH
Q 009256 401 LKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQDRIIGAHFFSPA------------HVMPLLEIVRTERTSA 466 (539)
Q Consensus 401 ~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~~r~vg~h~~~p~------------~~~~~vei~~~~~t~~ 466 (539)
....+++++.++++++++|++.+|.. +...+....+...+|+|.||+.++ ..+..+.++++..+++
T Consensus 57 ~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~ 136 (258)
T PF02153_consen 57 AIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDP 136 (258)
T ss_dssp HHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-H
T ss_pred HHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChH
Confidence 78899999999999999998776653 334555555556789999998776 2356778889999999
Q ss_pred HHHHHHHHHHHHcCceeEEEc
Q 009256 467 QVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.++.+..+++.+|.+++.+.
T Consensus 137 ~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 137 EALELVEELWEALGARVVEMD 157 (258)
T ss_dssp HHHHHHHHHHHHCT-EEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEcC
Confidence 999999999999999998873
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=117.37 Aligned_cols=153 Identities=16% Similarity=0.106 Sum_probs=104.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~- 385 (539)
.++|+|||+|.||.++|..|.+.|++|++||++... +.+. +.| +...++. +.+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~-----------~~G-------------v~~~~d~~e~~~ 106 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAAR-----------SLG-------------VSFFLDPHDLCE 106 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHH-----------HcC-------------CEEeCCHHHHhh
Confidence 348999999999999999999999999999998543 2211 111 2223344 323
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHH-HhCCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCCCC-----Ceee
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELE-KACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLE 457 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~-~~~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~~~-----~~ve 457 (539)
.+||+||.|+| ......++.++. ++++++++|++.+|... ...+...++....+++.||+..+... ....
T Consensus 107 ~~aDvViLavP--~~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~ 184 (667)
T PLN02712 107 RHPDVILLCTS--IISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRF 184 (667)
T ss_pred cCCCEEEEcCC--HHHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcE
Confidence 56999999999 455677778775 66888998887665432 23444445444469999998777521 1111
Q ss_pred ee-----cCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 458 IV-----RTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 458 i~-----~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+. +.+....+.+++++++++.+|.+++.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms 219 (667)
T PLN02712 185 VYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMS 219 (667)
T ss_pred EEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeC
Confidence 12 2222344667888899999999999884
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.6e-09 Score=106.11 Aligned_cols=147 Identities=17% Similarity=0.129 Sum_probs=95.3
Q ss_pred cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccCC
Q 009256 320 GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIES 398 (539)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe~ 398 (539)
|.+||.+|+++||+|++||+|+++.+.... ....+.| ....++. +++++||+||.|+|++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~------e~LaeaG-------------A~~AaS~aEAAa~ADVVIL~LPd~ 92 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLW------KKVEDAG-------------VKVVSDDKEAAKHGEIHVLFTPFG 92 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhh------HHHHHCC-------------CeecCCHHHHHhCCCEEEEecCCH
Confidence 789999999999999999999876542110 0112222 2334444 7789999999999966
Q ss_pred hhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhc----cC---CCCcEEEeccCCCCCC-CCeeeeec------CCCC
Q 009256 399 VPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK----TS---SQDRIIGAHFFSPAHV-MPLLEIVR------TERT 464 (539)
Q Consensus 399 ~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~----~~---~~~r~vg~h~~~p~~~-~~~vei~~------~~~t 464 (539)
..+.. ++..+.++++++++++.+ |++++..+... +. ..-.+..+||-.-|.. ..-.-++. -...
T Consensus 93 aaV~e-Vl~GLaa~L~~GaIVID~-STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A 170 (341)
T TIGR01724 93 KGTFS-IARTIIEHVPENAVICNT-CTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMA 170 (341)
T ss_pred HHHHH-HHHHHHhcCCCCCEEEEC-CCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccC
Confidence 66554 457788899999988754 45555433322 22 2224555565433311 11111222 2235
Q ss_pred cHHHHHHHHHHHHHcCceeEEEc
Q 009256 465 SAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
++|.++++.++.+..|+.++.+.
T Consensus 171 ~ee~i~~~~el~~~~~~~~~~~p 193 (341)
T TIGR01724 171 TEEQISKCVELAKSTGKKAYVVP 193 (341)
T ss_pred CHHHHHHHHHHHHHhCCCeeecc
Confidence 89999999999999999999873
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-11 Score=99.07 Aligned_cols=48 Identities=38% Similarity=0.560 Sum_probs=45.5
Q ss_pred cchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccC
Q 009256 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCW 538 (539)
Q Consensus 491 g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~ 538 (539)
||++||++.++++||.+++++|+ ++++||+++ .++|+|+|||+++|.+
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p~Gpf~l~D~~ 50 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFPMGPFELADLV 50 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHSSTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCccchHHHHh
Confidence 89999999999999999999995 999999999 6799999999999975
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.06 E-value=3e-10 Score=94.03 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=69.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC---CeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Cc-c
Q 009256 310 KVAVIGGGLMGSGIATAHILNN---IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DY-S 383 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G---~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~-~ 383 (539)
||+|||.|.||.+|+..|.++| ++|.++ ++++++.+++.++. ...... +. +
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 57 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-----------------------GVQATADDNEE 57 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-----------------------TTEEESEEHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-----------------------ccccccCChHH
Confidence 7999999999999999999999 999965 99999988875431 122222 33 7
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
.++.+|+||.|+| +....+++.++ ....++.+++|.+.
T Consensus 58 ~~~~advvilav~--p~~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 58 AAQEADVVILAVK--PQQLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHTSEEEE-S---GGGHHHHHHHH-HHHHTTSEEEEEST
T ss_pred hhccCCEEEEEEC--HHHHHHHHHHH-hhccCCCEEEEeCC
Confidence 7889999999998 66677899999 66678888887654
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.6e-10 Score=95.28 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
.||+|||+|.+|..++..|.++||+|..+ .|+++..+++...+ +.....+..+.+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~----------------------~~~~~~~~~~~~~~ 68 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI----------------------GAGAILDLEEILRD 68 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC------------------------TT-----TTGGGCC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc----------------------cccccccccccccc
Confidence 48999999999999999999999999865 78877766653321 11222222266889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHh--CCCCeEEEecCCCCChHHHhhccCCCCcEEEecc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKA--CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF 446 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~--~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~ 446 (539)
+|++|+++|++. ...+.++|... ..++.+|+-++-..+.+-+.........+..+||
T Consensus 69 aDlv~iavpDda--I~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 69 ADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp -SEEEE-S-CCH--HHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred CCEEEEEechHH--HHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 999999999874 77888999887 7789988866656666655544444445566664
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.8e-09 Score=96.33 Aligned_cols=182 Identities=14% Similarity=0.126 Sum_probs=125.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~ 384 (539)
++|+.||+|.||..|+++|.+.||+|++||+|++..+.+... + .+..+++ +.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~-----------g-------------a~~a~sl~el~~~ 56 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDE-----------G-------------ATGAASLDELVAK 56 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhc-----------C-------------CccccCHHHHHHh
Confidence 379999999999999999999999999999999998887442 2 1111221 33
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh--hccCCCCcEEEeccCCCCCCC-------Ce
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG--EKTSSQDRIIGAHFFSPAHVM-------PL 455 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~--~~~~~~~r~vg~h~~~p~~~~-------~~ 455 (539)
+..--.|-.+||.. +....++.++.+.+.++.+|++...+.--..+. ..+.. .|+||++.-..+ ..
T Consensus 57 L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~----kgi~flD~GTSGG~~G~~~G~ 131 (300)
T COG1023 57 LSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAE----KGIHFLDVGTSGGVWGAERGY 131 (300)
T ss_pred cCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHh----cCCeEEeccCCCCchhhhcCc
Confidence 45557788888843 256788999999999999998765543333222 22221 277886533221 11
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCce---eEEEcC-cccc----hhhcchHHHH---HHHHHHHHcC---CCHHHHHHH
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKV---PVVVGN-CTGF----AVNRAFFPYS---QSARLLVSLG---VDVFRIDSA 521 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~---~v~v~~-~~g~----v~nrl~~~~~---~Ea~~l~~~G---~~~~~id~a 521 (539)
.-++.| ++++++++.++|+.+.-. -.+++. ..|. |-|-+=+.++ .|.+.++++. ++.++|.++
T Consensus 132 ~lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~v 208 (300)
T COG1023 132 CLMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEV 208 (300)
T ss_pred eEEecC---cHHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 124455 889999999999998652 345654 4454 3377755444 4889999884 488888888
Q ss_pred H
Q 009256 522 I 522 (539)
Q Consensus 522 ~ 522 (539)
+
T Consensus 209 W 209 (300)
T COG1023 209 W 209 (300)
T ss_pred H
Confidence 8
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=110.02 Aligned_cols=125 Identities=21% Similarity=0.341 Sum_probs=89.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||..+|..++..|+ +|+++|++++.++.-.-+..+. .. ......++..+++++++++
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~----~~--------~~~~~~~I~~~~d~~~l~~ 74 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHS----NV--------IAGSNSKVIGTNNYEDIAG 74 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhh----hh--------ccCCCeEEEECCCHHHhCC
Confidence 589999999999999999999996 9999999998753211111110 00 0001135666678889999
Q ss_pred cCEEEEcc-------------------cCChhHHHHHHHHHHHhCCCC-eEEEecCCCCChHHHhhccCCC-CcEEEec
Q 009256 388 VDMVIEAV-------------------IESVPLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (539)
Q Consensus 388 aDlVi~av-------------------pe~~~~~~~~~~~l~~~~~~~-~ii~s~ts~~~~~~i~~~~~~~-~r~vg~h 445 (539)
||+||++. +++..+++++.+++.+++++. .++++|.+.+....++.....| .|++|++
T Consensus 75 aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 75 SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 99999955 456777888899999999775 3455777766666666666554 7888876
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-09 Score=106.48 Aligned_cols=172 Identities=13% Similarity=0.079 Sum_probs=111.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+.++||+|||+|.||+++|..|+++| +|++|.++++..+.+.+...+ ..+...+. .....+..+++. ++
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~~~-------~l~~~i~~t~d~~~a 74 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGNDV-------VLSDTLRATTDFAEA 74 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCCCc-------ccCCCeEEECCHHHH
Confidence 34568999999999999999999999 789999999887776542100 00011010 001235566666 56
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-------HHHhhccCCCCcEE-EeccCCCCC---CC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-------NIVGEKTSSQDRII-GAHFFSPAH---VM 453 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-------~~i~~~~~~~~r~v-g~h~~~p~~---~~ 453 (539)
+.++|+||.++| ....+.+++++.+++++++++++.+.++.. +.+.+.++. .++. -..|..+.. ..
T Consensus 75 ~~~aDlVilavp--s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~ 151 (341)
T PRK12439 75 ANCADVVVMGVP--SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGY 151 (341)
T ss_pred HhcCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCC
Confidence 899999999998 666788999999999998878777777775 234444432 1211 111211111 11
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF 492 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~ 492 (539)
+...++.. .+++..+.+..+|..-+..++...|..|.
T Consensus 152 ~t~~via~--~~~~~~~~v~~lf~~~~~~v~~s~Di~gv 188 (341)
T PRK12439 152 AAAAVLAM--PDQHLATRLSPLFRTRRFRVYTTDDVVGV 188 (341)
T ss_pred CeEEEEEe--CCHHHHHHHHHHhCCCCEEEEEcCchHHH
Confidence 11112222 26778888999998888888777786653
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-09 Score=109.11 Aligned_cols=122 Identities=18% Similarity=0.286 Sum_probs=84.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 311 VAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
|+|||+|.||..+|..++..|+ +|+++|++++.++...-.+.. .... .....+++.+++++++++||
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~----~~~~--------~~~~~~I~~t~d~~~l~dAD 68 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQ----AAPI--------LGSDTKVTGTNDYEDIAGSD 68 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHH----hhhh--------cCCCeEEEEcCCHHHhCCCC
Confidence 6899999999999999999887 999999998754322111111 1100 00113566667788899999
Q ss_pred EEEEcc--------------cCChhHHHHHHHHHHHhCCCCeE-EEecCCCCChHHHhhccCC-CCcEEEe
Q 009256 390 MVIEAV--------------IESVPLKQKIFSELEKACPPHCI-LATNTSTIDLNIVGEKTSS-QDRIIGA 444 (539)
Q Consensus 390 lVi~av--------------pe~~~~~~~~~~~l~~~~~~~~i-i~s~ts~~~~~~i~~~~~~-~~r~vg~ 444 (539)
+||+++ +++..+++++++++.++++++.+ +++|...+....+++.... |.|++|+
T Consensus 69 iVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGl 139 (300)
T cd01339 69 VVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGM 139 (300)
T ss_pred EEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEe
Confidence 999866 66888899999999999977764 3455555555455554443 4567775
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=107.76 Aligned_cols=125 Identities=19% Similarity=0.292 Sum_probs=81.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
|+||+|||+|.||..+|..++..|+ +|+++|++++.++.....+.... ...+ ...+++.++++++++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~---~~~~---------~~~~i~~~~d~~~~~ 69 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAA---PVEG---------FDTKITGTNDYEDIA 69 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhh---hhcC---------CCcEEEeCCCHHHHC
Confidence 4699999999999999999999876 99999999887543322221110 0000 113566667778899
Q ss_pred CcCEEEEcc--------------cCChhHHHHHHHHHHHhCCCCeEE-EecCCCCChHHHhhccCC-CCcEEEe
Q 009256 387 DVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL-ATNTSTIDLNIVGEKTSS-QDRIIGA 444 (539)
Q Consensus 387 ~aDlVi~av--------------pe~~~~~~~~~~~l~~~~~~~~ii-~s~ts~~~~~~i~~~~~~-~~r~vg~ 444 (539)
+||+||+++ .++..+++++++++.+++++..+| ++|...+....+...... +.+++|+
T Consensus 70 ~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 70 GSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 999999986 245578888999999998665333 333333222223232222 3566665
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-08 Score=98.88 Aligned_cols=193 Identities=14% Similarity=0.121 Sum_probs=130.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~ 384 (539)
..||+||+|.||+.+|.++.++||.|.+|+|++++.+...+.. ..+ ..+....++ +.
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~--------~~~-----------k~i~~~~sieefV~~ 64 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAER--------AKG-----------KNIVPAYSIEEFVAS 64 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhC--------ccC-----------CCccccCcHHHHHHH
Confidence 4699999999999999999999999999999999988875531 101 123333333 33
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhh---ccCCCCcEEEeccCCC---CCCCCeeee
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSP---AHVMPLLEI 458 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~---~~~~~~r~vg~h~~~p---~~~~~~vei 458 (539)
++.---|+++|-.- .....++++|.+++.++.|+++...+.-.+++.. .....-.|+|+-.-.. +..+|. +
T Consensus 65 Le~PRkI~lMVkAG-~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS--i 141 (473)
T COG0362 65 LEKPRKILLMVKAG-TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS--I 141 (473)
T ss_pred hcCCceEEEEEecC-CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC--c
Confidence 56667788887543 3346788999999999999997665544443332 2223345777754211 111111 4
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCce----e--EEEc-Ccccchh----hcchH---HHHHHHHHHHHc--CCCHHHHHHHH
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKV----P--VVVG-NCTGFAV----NRAFF---PYSQSARLLVSL--GVDVFRIDSAI 522 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~----~--v~v~-~~~g~v~----nrl~~---~~~~Ea~~l~~~--G~~~~~id~a~ 522 (539)
++| .++++.+.+.++++.+..+ | .+++ ++.|..+ |=+=+ .++.|++.+.+. |.+.++|.+++
T Consensus 142 MpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF 219 (473)
T COG0362 142 MPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVF 219 (473)
T ss_pred CCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 444 4899999999999987542 2 3344 4566544 66644 567799999988 46999999888
Q ss_pred HhC
Q 009256 523 RSF 525 (539)
Q Consensus 523 ~~~ 525 (539)
..+
T Consensus 220 ~~W 222 (473)
T COG0362 220 EEW 222 (473)
T ss_pred HHh
Confidence 443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-09 Score=107.58 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=87.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||.+++..++..| .+|+++|++++.++...-..... .. ......++..+++++++++
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~----~~--------~~~~~~~i~~~~d~~~l~~ 73 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF----ST--------LVGSNINILGTNNYEDIKD 73 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh----cc--------ccCCCeEEEeCCCHHHhCC
Confidence 38999999999999999999999 69999999987755321111110 00 0000124555677789999
Q ss_pred cCEEEEcc--cCCh------------hHHHHHHHHHHHhCCCC-eEEEecCCCCChHHHhhccCCC-CcEEEec
Q 009256 388 VDMVIEAV--IESV------------PLKQKIFSELEKACPPH-CILATNTSTIDLNIVGEKTSSQ-DRIIGAH 445 (539)
Q Consensus 388 aDlVi~av--pe~~------------~~~~~~~~~l~~~~~~~-~ii~s~ts~~~~~~i~~~~~~~-~r~vg~h 445 (539)
||+||++. |.++ .+++++.+++.+++++. .++++|.+.+....+......| .+++|++
T Consensus 74 ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 74 SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99999998 6665 78889999999998776 3445666655555555555544 6788775
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.8e-09 Score=105.99 Aligned_cols=165 Identities=18% Similarity=0.075 Sum_probs=103.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--------CeEEEEeC-----ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 009256 310 KVAVIGGGLMGSGIATAHILNN--------IYVVLKEV-----NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G--------~~V~~~d~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 376 (539)
||+|||+|.||.++|..++++| ++|++|.+ +++..+...+..++ .++...-.+ ..++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n--~~ylpgi~L--------p~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHEN--VKYLPGIKL--------PANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCC--ccccCCCcC--------CCCe
Confidence 6999999999999999999999 99999999 44433333221100 000100001 1356
Q ss_pred cccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--H-------HhhccCCCCcEEEecc
Q 009256 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--I-------VGEKTSSQDRIIGAHF 446 (539)
Q Consensus 377 ~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~-------i~~~~~~~~r~vg~h~ 446 (539)
++++|+ +++++||+||.++| .+..+.+++++.++++++.++++.++++... . +.+.+.. ++. .
T Consensus 71 ~at~dl~eal~~ADiIIlAVP--s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~--~~~---~ 143 (342)
T TIGR03376 71 VAVPDLVEAAKGADILVFVIP--HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGI--PCG---V 143 (342)
T ss_pred EEECCHHHHHhcCCEEEEECC--hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCC--CeE---E
Confidence 777887 67899999999999 6668888999999999888888888877654 2 1122211 211 1
Q ss_pred CCCCCC-------CCeeeeecCCCCc--HHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 447 FSPAHV-------MPLLEIVRTERTS--AQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 447 ~~p~~~-------~~~vei~~~~~t~--~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
...|.. .+...++.+..-+ .+..+.++.+|..=-.+++...|..|
T Consensus 144 lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~G 197 (342)
T TIGR03376 144 LSGANLANEVAKEKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAG 197 (342)
T ss_pred eeCcchHHHHHcCCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCccc
Confidence 122211 1111122222111 78888888888765556666667655
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7e-09 Score=106.09 Aligned_cols=164 Identities=18% Similarity=0.060 Sum_probs=104.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-------CeEEEEeCChHH-----HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSEY-----LLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 376 (539)
+||+|||+|.||+++|..++++| ++|.+|.++++. .+...+..++ .+++..-.+. +++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N--~~ylp~~~Lp--------~ni 81 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHEN--VKYLPGIKLP--------DNI 81 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCC--cccCCCCcCC--------Cce
Confidence 58999999999999999999997 899999999862 3333221100 0111111111 467
Q ss_pred cccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHH--hCCCCeEEEecCCCCChHH--------H-hhccCCCCcEEEe
Q 009256 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK--ACPPHCILATNTSTIDLNI--------V-GEKTSSQDRIIGA 444 (539)
Q Consensus 377 ~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~--~~~~~~ii~s~ts~~~~~~--------i-~~~~~~~~r~vg~ 444 (539)
..++|+ +++++||+||.++| ++..+.+++++.+ +++++.+++|.+.++...+ + .+.+.. ++..
T Consensus 82 ~~tsdl~eav~~aDiIvlAVP--sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~--~~~~- 156 (365)
T PTZ00345 82 VAVSDLKEAVEDADLLIFVIP--HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGI--PCCA- 156 (365)
T ss_pred EEecCHHHHHhcCCEEEEEcC--hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCC--CeEE-
Confidence 778887 67899999999999 7778899999988 7777878888777665432 2 122222 2211
Q ss_pred ccCCCCC-------CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 445 HFFSPAH-------VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 445 h~~~p~~-------~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
+..|. ..+...++.+ .+++..+.++++|..=..+++...|..|
T Consensus 157 --LsGPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~~~frvy~s~Dv~G 206 (365)
T PTZ00345 157 --LSGANVANDVAREEFSEATIGC--EDKDDALIWQRLFDRPYFKINCVPDVIG 206 (365)
T ss_pred --EECCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCcEEEEEcCCccc
Confidence 11221 1111112222 2778888888888766666666667554
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.4e-08 Score=96.94 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=114.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||..+|..|+++|++|++|++ ++..+...+. .+ .+....-+ .. -.....++. +...+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~---g~--~~~~~~~~-----~~-~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER---GL--VIRSDHGD-----AV-VPGPVITDPEELTGP 68 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC---Ce--EEEeCCCe-----EE-ecceeecCHHHccCC
Confidence 3799999999999999999999999999999 7666654321 00 00000000 00 011123344 33589
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccCCCCcEE-Eecc-----CCCCCCC----Cee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHF-----FSPAHVM----PLL 456 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~~~~r~v-g~h~-----~~p~~~~----~~v 456 (539)
+|+||.|++... ...+++++.+.+.++++|++...++... .+...++. .+++ +..+ ..|-... ..+
T Consensus 69 ~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~ 145 (305)
T PRK12921 69 FDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL 145 (305)
T ss_pred CCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE
Confidence 999999998543 5677788888888888887777776543 44444432 2333 2222 1211100 001
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc-----chhh------------------------cchHHHHHHHHH
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVN------------------------RAFFPYSQSARL 507 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g-----~v~n------------------------rl~~~~~~Ea~~ 507 (539)
.+-..+....+..+.+..++...|..+....|... ++.| +++..++.|...
T Consensus 146 ~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~ 225 (305)
T PRK12921 146 TFGEIPGQRSERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLA 225 (305)
T ss_pred EEcCCCCCcCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHH
Confidence 11111223345666777788887766555555321 1112 334456678888
Q ss_pred HHHc-CC--CHHHHHHHH
Q 009256 508 LVSL-GV--DVFRIDSAI 522 (539)
Q Consensus 508 l~~~-G~--~~~~id~a~ 522 (539)
+.+. |+ +.+.+++.+
T Consensus 226 v~~a~G~~~~~~~~~~~~ 243 (305)
T PRK12921 226 VARAEGAPLRDDVVEEIV 243 (305)
T ss_pred HHHHcCCCCChhHHHHHH
Confidence 8866 87 455555554
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.7e-08 Score=100.57 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=74.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-CC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-KD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~~ 387 (539)
||+|||+|.||..+|..|+++|++|++|+|+++.++...+...+. .++. +. .....+..+++. +.+ .+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~--~~~~-~~-------~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNL--KYLP-TC-------HLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCc--ccCC-CC-------cCCCCeEEeCCHHHHHhCC
Confidence 799999999999999999999999999999988776654321000 0000 00 000233445555 444 58
Q ss_pred cCEEEEcccCChhHHHHHHHHHHH-hCCCCeEEEecCCCCCh
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEK-ACPPHCILATNTSTIDL 428 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~-~~~~~~ii~s~ts~~~~ 428 (539)
+|+||.++| ......+++++.+ ++++++.+++.++++..
T Consensus 72 ~Dliiiavk--s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 72 ATCIILAVP--TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CCEEEEEeC--HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999999998 5557788899988 88888766666766643
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.4e-08 Score=96.85 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=76.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
||+|||+|.||..+|..|+++|++|++++++++..+...+. .+. +..+.. ...+...++.+.+.++|
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~---g~~--~~~~~~--------~~~~~~~~~~~~~~~~d 68 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN---GLR--LEDGEI--------TVPVLAADDPAELGPQD 68 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc---CCc--ccCCce--------eecccCCCChhHcCCCC
Confidence 79999999999999999999999999999988776655331 000 001100 01122334444458999
Q ss_pred EEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhcc
Q 009256 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKT 435 (539)
Q Consensus 390 lVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~ 435 (539)
+||.+++.. ....+++.+.+++.++++|++...++... .+...+
T Consensus 69 ~vila~k~~--~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 69 LVILAVKAY--QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred EEEEecccc--cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 999999844 35678888998888888777777777643 344434
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.7e-07 Score=91.18 Aligned_cols=201 Identities=9% Similarity=0.067 Sum_probs=115.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
+..++|+|||+|.||+.+|..|+++|++|+++.+++. +...+. .+........ .........++.+..
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~-------g~~~~~~~~~---~~~~~~~~~~~~~~~ 70 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVREN-------GLQVDSVHGD---FHLPPVQAYRSAEDM 70 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhC-------CeEEEeCCCC---eeecCceEEcchhhc
Confidence 3446899999999999999999999999999999863 222110 0000000000 000112223334556
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccCCCCcEEEe-cc-----CCCC---CC--C
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGA-HF-----FSPA---HV--M 453 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~~~~r~vg~-h~-----~~p~---~~--~ 453 (539)
..+|+||.|++... .+.+++.+.+.+.+++++++...++... .+...++ ++++++. .+ ..|. +. +
T Consensus 71 ~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g 147 (313)
T PRK06249 71 PPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYG 147 (313)
T ss_pred CCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCC
Confidence 78999999998443 3567788888888888888777787654 4444443 2344432 22 2221 01 1
Q ss_pred CeeeeecCCCCc-----HHHHHHHHHHHHHcCceeEEEcCccc-----chhh------------------------cchH
Q 009256 454 PLLEIVRTERTS-----AQVILDLMTVGKIIKKVPVVVGNCTG-----FAVN------------------------RAFF 499 (539)
Q Consensus 454 ~~vei~~~~~t~-----~e~~~~~~~l~~~lg~~~v~v~~~~g-----~v~n------------------------rl~~ 499 (539)
+. .+-..+..+ .+..+.+..+++..|..+....|... ++.| .++.
T Consensus 148 ~~-~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~ 226 (313)
T PRK06249 148 RV-NLGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIR 226 (313)
T ss_pred cE-EEecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHH
Confidence 11 111111112 46667788888888877665555332 1111 2234
Q ss_pred HHHHHHHHHHHc-CC--CHHHHHHHH
Q 009256 500 PYSQSARLLVSL-GV--DVFRIDSAI 522 (539)
Q Consensus 500 ~~~~Ea~~l~~~-G~--~~~~id~a~ 522 (539)
.++.|+..+++. |+ +.+.++..+
T Consensus 227 ~~~~E~~~va~a~Gi~~~~~~~~~~~ 252 (313)
T PRK06249 227 ALMAEVIQGAAACGHTLPEGYADHML 252 (313)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHH
Confidence 556688888866 87 444465555
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.4e-08 Score=97.90 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=69.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||..+|..++.+|+ +|+++|++++..+...-.+. +.+. ......+++++++++++++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~-------~~~~-----~~~~~~~i~~t~d~~~~~~ 69 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMY-------EASP-----VGGFDTKVTGTNNYADTAN 69 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhh-------hhhh-----ccCCCcEEEecCCHHHhCC
Confidence 389999999999999999999887 89999998664331111111 1000 0001146777788877999
Q ss_pred cCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
||+||.+++. +....+.+.+++.++.+ +.+++..+
T Consensus 70 aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p-~~~iIv~t 118 (305)
T TIGR01763 70 SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSP-NPIIVVVS 118 (305)
T ss_pred CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEec
Confidence 9999999972 34556666677888864 44444333
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-07 Score=101.61 Aligned_cols=163 Identities=20% Similarity=0.228 Sum_probs=106.8
Q ss_pred cCcEEEEEeCCC----C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchH
Q 009256 12 NDGVAIITLINP----P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 12 ~~~v~~i~l~~p----~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
++.|++|+++-. + .+.++. +.+.+.++.+..|++||+|||+-..+ |+.... .+.
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInSp----GGs~~a-------------se~ 384 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNSP----GGSVTA-------------SEV 384 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecCC----CCcHHH-------------HHH
Confidence 467999998653 1 233444 56788899999999999999985432 221100 011
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcc------------cCCCCCCcchhhcc---
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGFGGTQRL--- 150 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~g~~~~l--- 150 (539)
..+.+ .+++...||||+.+.|.|..||+.++++||.++|.+.+..|.-.+ ++|+-+..-.+-.+
T Consensus 385 i~~~i-~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~ 463 (618)
T PRK10949 385 IRAEL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV 463 (618)
T ss_pred HHHHH-HHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCc
Confidence 22333 346677899999999999999999999999999999876544222 24443321111101
Q ss_pred -------------------------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 009256 151 -------------------------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (539)
Q Consensus 151 -------------------------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (539)
.|.+..... +-+..|+.+++++|++.||||++-..++..+.+.++
T Consensus 464 ~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~ 539 (618)
T PRK10949 464 SITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQI-DKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL 539 (618)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHH-HHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 112222222 335689999999999999999998766555444443
|
|
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=84.69 Aligned_cols=142 Identities=25% Similarity=0.293 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.+++.+.+-|.+.++.++++ ..+.|+|.=. |-|+++.. ...++ +.|...++||++.|+
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~----------------~~~I~-~~i~~~~~pvv~~v~ 66 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADA----------------AGNIV-QRIQQSKIPVIIYVY 66 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHH----------------HHHHH-HHHHhcCcCEEEEEe
Confidence 36677888899999998865 5677877522 22333221 22445 667889999999999
Q ss_pred ---CccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcc--h------hhc------cccccC--HHHHHHHHHcCC
Q 009256 107 ---GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG--G------TQR------LPRLVG--LSKAIEMMLLSK 167 (539)
Q Consensus 107 ---G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g--~------~~~------l~r~vG--~~~a~~l~l~g~ 167 (539)
|.|.++|.-++++||.+++.+++.++....-.|.-+... . ... +.+.-| ...+.+++-...
T Consensus 67 p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~ 146 (172)
T cd07015 67 PPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDL 146 (172)
T ss_pred cCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhc
Confidence 999999999999999999999999998776433211000 0 011 122223 466778888889
Q ss_pred CCCHHHHHHcCCcceecCc-chHH
Q 009256 168 SITSEEGWKLGLIDAVVTS-EELL 190 (539)
Q Consensus 168 ~~~a~eA~~~Glv~~vv~~-~~l~ 190 (539)
.++++||+++|++|.|+.. ++|+
T Consensus 147 ~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 147 SLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred CcCHHHHHHcCCceeeeCCHHHHh
Confidence 9999999999999999854 3443
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4e-07 Score=85.12 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=81.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
||+|||+ |.||..++..|.++||+|++ .+|
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------------------------------~~~ 32 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------------------------------KKA 32 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------------------------------CCC
Confidence 7999998 99999999999999999861 368
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCC-----CeeeeecCCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM-----PLLEIVRTER 463 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~-----~~vei~~~~~ 463 (539)
|+||.|+| .....++++++. .+|++.+|.... +... ..+++|.||+..|... ..+.+ ..+.
T Consensus 33 DlVilavP--v~~~~~~i~~~~------~~v~Dv~SvK~~--i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv-~~~~ 98 (197)
T PRK06444 33 DHAFLSVP--IDAALNYIESYD------NNFVEISSVKWP--FKKY---SGKIVSIHPLFGPMSYNDGVHRTVIF-INDI 98 (197)
T ss_pred CEEEEeCC--HHHHHHHHHHhC------CeEEeccccCHH--HHHh---cCCEEecCCCCCCCcCcccccceEEE-ECCC
Confidence 99999999 444556665543 256666665442 2221 3479999997765432 22333 3567
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
++++.++.++++++ |.+++.+.
T Consensus 99 ~~~~~~~~~~~l~~--G~~~~~~t 120 (197)
T PRK06444 99 SRDNYLNEINEMFR--GYHFVEMT 120 (197)
T ss_pred CCHHHHHHHHHHHc--CCEEEEeC
Confidence 88899999999998 88877763
|
|
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.66 E-value=8e-08 Score=87.38 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcC
Q 009256 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G 107 (539)
++..+.+++.+.|..++.++..+.|+|.=. |.|+++. ....++ +.|..+++||++.+.|
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~~~~i~-~~i~~~~~~v~~~~~g 67 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVF----------------AGMAIY-DTIKFIKADVVTIIDG 67 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHH----------------HHHHHH-HHHHhcCCCceEEEEe
Confidence 567889999999999998877777777422 2233221 122455 6788899999999999
Q ss_pred ccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHHHHc
Q 009256 108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMMLL 165 (539)
Q Consensus 108 ~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l~l~ 165 (539)
.|.++|.-++++|| .|++.++++|.+....-+. .|... .+.+.-| .....+++-.
T Consensus 68 ~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~ 144 (162)
T cd07013 68 LAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLER 144 (162)
T ss_pred ehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcC
Confidence 99999999999999 6888888887754332111 11110 1111222 4555666777
Q ss_pred CCCCCHHHHHHcCCccee
Q 009256 166 SKSITSEEGWKLGLIDAV 183 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~v 183 (539)
+..++|+||+++||||++
T Consensus 145 ~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 145 DTWLSAREAVEYGFADTI 162 (162)
T ss_pred CccccHHHHHHcCCCCcC
Confidence 788899999999999975
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-08 Score=97.49 Aligned_cols=99 Identities=16% Similarity=0.061 Sum_probs=76.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
+|+|||+|.||.++|..+...|++|++||++++..... +....++ +.+++|
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----------------------------~~~~~~l~ell~~a 199 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----------------------------LTYKDSVKEAIKDA 199 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------hhccCCHHHHHhcC
Confidence 79999999999999999999999999999997542110 1122344 668999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS 436 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~ 436 (539)
|+|+.++|...+....+.+++.+.++++++++..+.+..+. .+...+.
T Consensus 200 DiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 200 DIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred CEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 99999999988877777778888999999998766664443 4544444
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=85.89 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=114.7
Q ss_pred CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHH
Q 009256 331 NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSEL 409 (539)
Q Consensus 331 G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l 409 (539)
.++|++++|++++++.+.+.+ + +....+. +.+.+||+||.|++ +.....++.++
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~----------------------g-~~~~~~~~e~~~~aDiIiLaVk--P~~i~~vl~~l 63 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL----------------------G-IVASSDAQEAVKEADVVFLAVK--PQDLEEVLSEL 63 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc----------------------C-cEEeCChHHHHhhCCEEEEEeC--HHHHHHHHHHH
Confidence 368999999998876653321 1 2223333 55688999999998 66677888888
Q ss_pred HHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee-cCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 410 EKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV-RTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 410 ~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~-~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+.+.++.+|+|...++++.++...+....+++.+.|..|...+..+..+ .+...+++..+.++.+|..+|....+ .+
T Consensus 64 ~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v-~E 142 (245)
T TIGR00112 64 KSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVEL-PE 142 (245)
T ss_pred hhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEE-CH
Confidence 87777778999999999999998888654578899998887776655544 67778889999999999999976644 33
Q ss_pred --cccch-----hhcchHHHHHHHH--HHHHcCCCHHHHHHHH
Q 009256 489 --CTGFA-----VNRAFFPYSQSAR--LLVSLGVDVFRIDSAI 522 (539)
Q Consensus 489 --~~g~v-----~nrl~~~~~~Ea~--~l~~~G~~~~~id~a~ 522 (539)
...+. ...+++ ++.|++ ..++.|+++++-.+..
T Consensus 143 ~~~~~~talsgsgPA~~~-~~~~al~~~~v~~Gl~~~~A~~lv 184 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVF-LFIEALADAGVKQGLPRELALELA 184 (245)
T ss_pred HHcchHHhhccCcHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11111 122222 223332 3335588887766654
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-07 Score=92.04 Aligned_cols=98 Identities=29% Similarity=0.339 Sum_probs=75.0
Q ss_pred EEEEcC-CCCcHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 311 VAVIGG-GLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 311 I~iIG~-G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
|+|||+ |.||..++..++..| .+|++||+++++++.....+++..... ...+++.++|. ++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-------------~~~~i~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-------------ADIKVSITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-------------cCcEEEECCchHHH
Confidence 689999 999999999999999 799999999988777655544332211 01356667774 88
Q ss_pred CCCcCEEEE--------------cccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 385 FKDVDMVIE--------------AVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 385 ~~~aDlVi~--------------avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
+++||+||+ .+.++..+++++.+++.+++ ++++++.-
T Consensus 68 ~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~ 118 (263)
T cd00650 68 FKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVV 118 (263)
T ss_pred hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 999999999 55667788999999999998 45554433
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-06 Score=81.74 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=95.7
Q ss_pred cHHHHHHHHHCCCeEEEEeCChHHHHHH-HHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccC
Q 009256 320 GSGIATAHILNNIYVVLKEVNSEYLLKG-IKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIE 397 (539)
Q Consensus 320 G~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe 397 (539)
|+.||..|+.+||+|++.|+|.+-.+.. -+++ -+ ..+..++|. ++++.+++.+.-.|-
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~v-------ed-------------AGV~vv~dD~eaa~~~Ei~VLFTPF 92 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRV-------ED-------------AGVEVVSDDAEAAEHGEIHVLFTPF 92 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHH-------Hh-------------cCcEEecCchhhhhcceEEEEeccc
Confidence 7889999999999999999987755442 1111 11 235555554 889999999998884
Q ss_pred ChhHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccCCCCcEEEeccCCCCCC-----CCeeeeecCCC------
Q 009256 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHV-----MPLLEIVRTER------ 463 (539)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~~~~r~vg~h~~~p~~~-----~~~vei~~~~~------ 463 (539)
.. ..-.+.++|.++++.+++|+.+.+..++. .+...+..+.+-+|...++|.-+ -..+ ++.+..
T Consensus 93 Gk-~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-viagr~t~g~el 170 (340)
T COG4007 93 GK-ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VIAGRSTEGKEL 170 (340)
T ss_pred ch-hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EEeccCCCceee
Confidence 42 22356788999999999886433333322 33344444444455555544311 1111 333322
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
.++|.++++.+++++.|+.++++.
T Consensus 171 ATeEQi~r~velaes~Gk~~yv~p 194 (340)
T COG4007 171 ATEEQIERCVELAESTGKEVYVLP 194 (340)
T ss_pred ccHHHHHHHHHHHHhcCCceEecC
Confidence 378999999999999999998874
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-07 Score=84.68 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEE--ecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ia 103 (539)
..++..+...+...|..++.++..+-|.+ .+.| +|+. ....++ +.|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~----------------~g~~I~-d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVT----------------AGLAIY-DTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHH----------------HHHHHH-HHHHhcCCCEEE
Confidence 34788899999999998886644344444 3322 2221 123455 667888899999
Q ss_pred EEcCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchh------------------hccccccC--HHHHHH
Q 009256 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIE 161 (539)
Q Consensus 104 av~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~vG--~~~a~~ 161 (539)
.+.|.|.++|..|+++++ .|++.++++|.+....-|. .|-+ ..+...-| .....+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999843 4666555555543332111 1111 11222223 355566
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
++-.+..++|+||+++||||+|+..
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeec
Confidence 6677889999999999999999854
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-07 Score=92.89 Aligned_cols=180 Identities=17% Similarity=0.118 Sum_probs=134.4
Q ss_pred CcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcccccchHHHHHHH
Q 009256 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (539)
Q Consensus 13 ~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (539)
.+++.+.++ |+.|..|.++..+|..-++.+..+..+++..+|+.. ..|++|.|..++.-..... .........+++
T Consensus 65 ~~~~~~dmv-ieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~f-spa~~m~LlEii- 141 (380)
T KOG1683|consen 65 TGFANADMV-IEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFF-SPAHWMQLLEII- 141 (380)
T ss_pred cccccccee-ccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhcccccc-CHHHHHHHHHHH-
Confidence 378888887 889999999999999999999999999999998876 7799999999886532211 111222345666
Q ss_pred HHHHhCCCcEEEEEcCccccch--hHhhhccCEEEeeC--CceEeCCcccCC-CCCCcchhhccccccCHHHHHHHHHcC
Q 009256 92 NLIEDCKKPIVAAVEGLALGGG--LELAMGCHARIAAP--KTQLGLPELTLG-VIPGFGGTQRLPRLVGLSKAIEMMLLS 166 (539)
Q Consensus 92 ~~i~~~~~p~iaav~G~a~GgG--~~lal~~D~~ia~~--~a~f~~pe~~~G-l~p~~g~~~~l~r~vG~~~a~~l~l~g 166 (539)
....+++.|+.+++||++--|+ +-++.+|+|++... .-..+..+..++ .+|.+-.- .+....|...+-.-+--+
T Consensus 142 ~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD-~~~t~fGf~~g~~~L~d~ 220 (380)
T KOG1683|consen 142 LALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLID-SLITKFGFRVGERALADG 220 (380)
T ss_pred HhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHH-HHHHhcCccccHHHHhhc
Confidence 5688999999999999999998 88999999999984 333467777777 34444332 223334544445556678
Q ss_pred CCCCHHHHHHcCCcceecCc--chHHHHHHHH
Q 009256 167 KSITSEEGWKLGLIDAVVTS--EELLKVSRLW 196 (539)
Q Consensus 167 ~~~~a~eA~~~Glv~~vv~~--~~l~~~a~~~ 196 (539)
.-++..||++-|+++++.|. +++.+.....
T Consensus 221 ~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g 252 (380)
T KOG1683|consen 221 VGFDVAEALAVGLGDEIGPRIEEELLEKGRAG 252 (380)
T ss_pred cCccHHHHHhhccchhccchhHHHHHHHHhhh
Confidence 88999999999999999984 4554444433
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=78.02 Aligned_cols=102 Identities=24% Similarity=0.290 Sum_probs=69.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
+||+|||+ |.+|..+|..|...+. +++++|++++.++....++++....... .......+++++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~-------------~~~i~~~~~~~~ 67 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPS-------------PVRITSGDYEAL 67 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTE-------------EEEEEESSGGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccc-------------cccccccccccc
Confidence 48999999 9999999999999875 8999999998777655554433221110 111223566899
Q ss_pred CCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 386 ~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
++||+||.+... +..+.+++..++.++.++. +++..+.
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~-~vivvtN 119 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDA-IVIVVTN 119 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTS-EEEE-SS
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCcc-EEEEeCC
Confidence 999999988732 3335556666788887544 4444443
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-07 Score=89.90 Aligned_cols=143 Identities=15% Similarity=0.172 Sum_probs=88.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||.++|.+|...|++|+++++.....+.+.+ .| .... ++ +.++.
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-----------~G-------------~~v~-sl~Eaak~ 71 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-----------DG-------------FEVM-SVSEAVRT 71 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH-----------cC-------------CEEC-CHHHHHhc
Confidence 58999999999999999999999999999876433222211 11 2222 34 77899
Q ss_pred cCEEEEcccCChhHHHHHH-HHHHHhCCCCeEEEecCCCCChHHHhhccCCCC--cEEEeccCCCCC----------CCC
Q 009256 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPAH----------VMP 454 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~-~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~--r~vg~h~~~p~~----------~~~ 454 (539)
||+|+.++|++ +.. .++ +++.+.++++++++- +-+..+.-- .+..|. .++-+-|-.|-+ -.|
T Consensus 72 ADVV~llLPd~-~t~-~V~~~eil~~MK~GaiL~f-~hgfni~~~--~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp 146 (335)
T PRK13403 72 AQVVQMLLPDE-QQA-HVYKAEVEENLREGQMLLF-SHGFNIHFG--QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVP 146 (335)
T ss_pred CCEEEEeCCCh-HHH-HHHHHHHHhcCCCCCEEEE-CCCcceecC--ceeCCCCCeEEEECCCCCChHHHHHHHcCCCce
Confidence 99999999964 444 554 568999999997763 334333211 122222 222222222211 111
Q ss_pred eeeeecCCCCcHHHHHHHHHHHHHcCce
Q 009256 455 LLEIVRTERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 455 ~vei~~~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
.+.-+ ....+-.+.+.+..+...+|..
T Consensus 147 ~l~av-~qd~sg~a~~~ala~a~~iG~~ 173 (335)
T PRK13403 147 ALVAV-HQDATGTALHVALAYAKGVGCT 173 (335)
T ss_pred eEEEE-EECCCCcHHHHHHHHHHHcCCC
Confidence 11122 2233556788899999999876
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-06 Score=81.95 Aligned_cols=198 Identities=18% Similarity=0.236 Sum_probs=128.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHH----HHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKT----IEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
|.||+-||+|.+|++....++.. ..+|+++|.+..++...... .+..+++.++. ..-.++-+++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~---------crgknlffstd 71 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQ---------CRGKNLFFSTD 71 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHH---------hcCCceeeecc
Confidence 46899999999999987776654 46999999999998877543 13333333321 11135667778
Q ss_pred c-cCCCCcCEEEEcccC-------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH---HhhccCCCCcEEEe
Q 009256 382 Y-SEFKDVDMVIEAVIE-------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTSSQDRIIGA 444 (539)
Q Consensus 382 ~-~~~~~aDlVi~avpe-------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~---i~~~~~~~~r~vg~ 444 (539)
. .+++.+|+|+.+|.. |+...+...+.|.+....+.|++ ..|+.|+.. +...+.+... |+
T Consensus 72 iekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i 148 (481)
T KOG2666|consen 72 IEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GI 148 (481)
T ss_pred hHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--Cc
Confidence 7 779999999999842 55566666677888877777765 466666642 2222222111 22
Q ss_pred c------------------cCCCCCCCCeeeeecCCCCcH--HHHHHHHHHHHHcC-ceeEEE-----cCcccchhhcch
Q 009256 445 H------------------FFSPAHVMPLLEIVRTERTSA--QVILDLMTVGKIIK-KVPVVV-----GNCTGFAVNRAF 498 (539)
Q Consensus 445 h------------------~~~p~~~~~~vei~~~~~t~~--e~~~~~~~l~~~lg-~~~v~v-----~~~~g~v~nrl~ 498 (539)
+ .+||.+. +++|..|.+ .+++.+..+++.+- ..-+.. .+-..+.+|..+
T Consensus 149 ~fqilsnpeflaegtaikdl~npdrv-----ligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanafl 223 (481)
T KOG2666|consen 149 KFQILSNPEFLAEGTAIKDLFNPDRV-----LIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFL 223 (481)
T ss_pred eeEeccChHHhcccchhhhhcCCceE-----EECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHH
Confidence 2 2455544 778877654 56777777777753 333333 234456677776
Q ss_pred HHH---HHHHHHHHHc-CCCHHHHHHHH
Q 009256 499 FPY---SQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 499 ~~~---~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
+.- +|..-.++|. |.+.+++..++
T Consensus 224 aqrissins~salceatgadv~eva~av 251 (481)
T KOG2666|consen 224 AQRISSINSMSALCEATGADVSEVAYAV 251 (481)
T ss_pred HHHHhhhHHHHHHHHhcCCCHHHHHHHh
Confidence 643 4566777777 99999988877
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=85.78 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=87.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||..+|..+...|++|++||++... + +. .....++ +.++.
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-~----------------~~------------~~~~~~l~ell~~ 173 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-D----------------GI------------SSIYMEPEDIMKK 173 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-c----------------Cc------------ccccCCHHHHHhh
Confidence 58999999999999999888889999999987421 0 00 0001233 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCCC-CcEEEeccCC--CC---CCCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQ-DRIIGAHFFS--PA---HVMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~~-~r~vg~h~~~--p~---~~~~~vei~ 459 (539)
||+|+.++|.+.+.+.-+-++....++++++++..+.+-.+ ..+...+... -...++..|. |+ +..+.+.+.
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~~~~nviiT 253 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPDNVILS 253 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccCCCCCEEEC
Confidence 99999999988887665556677889999988855544333 3555544432 2333444332 21 234556677
Q ss_pred cC-C-CCcHHHHHHH
Q 009256 460 RT-E-RTSAQVILDL 472 (539)
Q Consensus 460 ~~-~-~t~~e~~~~~ 472 (539)
|+ . .++++..+.+
T Consensus 254 PHi~g~~t~e~~~~~ 268 (303)
T PRK06436 254 PHVAGGMSGEIMQPA 268 (303)
T ss_pred CccccccCHHHHHHH
Confidence 77 2 2455544443
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.2e-06 Score=77.88 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||.|..|.+.|.+|.+.|++|++-.+... ..+++.+ ..+.+.+-.++++.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~------------------------~Gf~v~~~~eAv~~ 60 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA------------------------DGFEVMSVAEAVKK 60 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH------------------------TT-ECCEHHHHHHC
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH------------------------CCCeeccHHHHHhh
Confidence 5899999999999999999999999999988866 4444422 23443333378899
Q ss_pred cCEEEEcccCChhHHHHHH-HHHHHhCCCCeEEEecCCCCCh
Q 009256 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~-~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
+|+|+..+|+ +.-.+++ ++|.++++++..+.. +.+..+
T Consensus 61 aDvV~~L~PD--~~q~~vy~~~I~p~l~~G~~L~f-ahGfni 99 (165)
T PF07991_consen 61 ADVVMLLLPD--EVQPEVYEEEIAPNLKPGATLVF-AHGFNI 99 (165)
T ss_dssp -SEEEE-S-H--HHHHHHHHHHHHHHS-TT-EEEE-SSSHHH
T ss_pred CCEEEEeCCh--HHHHHHHHHHHHhhCCCCCEEEe-CCcchh
Confidence 9999999994 3455777 779999999998763 444443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-07 Score=102.10 Aligned_cols=68 Identities=18% Similarity=0.123 Sum_probs=60.1
Q ss_pred HHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 472 LMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 472 ~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
+..++..+++.++.+++.+||++||++++++||+.+++++|+ +++|||.++ .++|||. |||+++|.++
T Consensus 627 v~~~~~~~~k~p~~~~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~G 700 (737)
T TIGR02441 627 ADEILAQYKLPPKAEVSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYG 700 (737)
T ss_pred HHHHHHHhccCcccccCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhC
Confidence 455667778777766789999999999999999999999997 999999999 7999996 9999999764
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-06 Score=89.85 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|.+||+++.... . . ..+ ... .++ +.+++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-~----------~~~-------------~~~-~~l~ell~~ 204 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-E-K----------ELG-------------AEY-RPLEELLRE 204 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-H-H----------HcC-------------CEe-cCHHHHHhh
Confidence 5899999999999999999999999999999864321 1 0 001 111 233 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|...+.+..+-++..+.++++++++..+.+-.+ ..+...+.
T Consensus 205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK 255 (333)
T ss_pred CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH
Confidence 99999999988877766667788889999998866555443 34444443
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-06 Score=78.83 Aligned_cols=133 Identities=21% Similarity=0.204 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcC
Q 009256 28 LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEG 107 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G 107 (539)
++.+...++...+..+..++..+.|+|.=. |.|+|+. ....++ +.|...+.|+++.+.|
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~----------------~~~~i~-~~l~~~~~~v~t~~~g 76 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVT----------------AGLAIY-DTMQYIKPPVSTICLG 76 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEEe
Confidence 678889999999999988766556665321 1222221 122444 6677889999999999
Q ss_pred ccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhh-----------------cccccc--CHHHHHHHHHcC
Q 009256 108 LALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLV--GLSKAIEMMLLS 166 (539)
Q Consensus 108 ~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~v--G~~~a~~l~l~g 166 (539)
.|.++|.-+++++| -|++.+++.|.+-+...+..- . ... .+...- ......+++-.+
T Consensus 77 ~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g-~-~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~ 154 (171)
T cd07017 77 LAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGG-Q-ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRD 154 (171)
T ss_pred EehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCC
Confidence 99999999999999 799999999988776544322 1 110 111222 234556777789
Q ss_pred CCCCHHHHHHcCCccee
Q 009256 167 KSITSEEGWKLGLIDAV 183 (539)
Q Consensus 167 ~~~~a~eA~~~Glv~~v 183 (539)
..++++||+++||||+|
T Consensus 155 ~~lta~EA~e~GiiD~V 171 (171)
T cd07017 155 RYMSAEEAKEYGLIDKI 171 (171)
T ss_pred ccccHHHHHHcCCCccC
Confidence 99999999999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-06 Score=88.99 Aligned_cols=94 Identities=16% Similarity=0.053 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||.++|..++ ..|.+|+.||+++..... ..+....++ +.++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---------------------------~~~~~~~~l~ell~ 199 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---------------------------TYVDYKDTIEEAVE 199 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---------------------------hhccccCCHHHHHH
Confidence 47999999999999999994 468899999988643210 011223344 5678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+||+|+.++|.......-+-.++.+.++++++++..+.+..+.
T Consensus 200 ~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd 242 (332)
T PRK08605 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVD 242 (332)
T ss_pred hCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccC
Confidence 9999999999777654322245677899999888766665543
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.4e-06 Score=86.32 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..|+..| ++|+++|+++++++.....+++..... ... ..+. ..++++++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~-~~~-----------~~i~-~~~~~~l~ 67 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFL-PSP-----------VKIK-AGDYSDCK 67 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhcc-CCC-----------eEEE-cCCHHHhC
Confidence 48999999999999999999999 689999999988776655443221100 000 0122 34557789
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+||+||.+... +..+.+.+.+++.++.+. ++++
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~-~~vi 114 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFD-GIFL 114 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999998853 333455666778887764 4444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=87.80 Aligned_cols=102 Identities=11% Similarity=0.071 Sum_probs=74.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||..+|..+...|++|++||++++..... .......++ +.+++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~--------------------------~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGV--------------------------QSFAGREELSAFLSQ 190 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc--------------------------eeecccccHHHHHhc
Confidence 589999999999999999999999999999876431110 000011233 66899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~ 436 (539)
||+|+.++|.+.+.+.-+-++....++++++++..+-+- .-..+...+.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~ 241 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALD 241 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHh
Confidence 999999999988877766677888899999887555443 3345555444
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=88.38 Aligned_cols=104 Identities=10% Similarity=-0.005 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||..+|+.+...|.+|+.||+++...+...+ ..+....++ +.++.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~------------------------~g~~~~~~l~ell~~ 248 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE------------------------LGLTYHVSFDSLVSV 248 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh------------------------cCceecCCHHHHhhc
Confidence 47999999999999999999999999999998632111100 012222344 66899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~ 436 (539)
||+|+.++|...+....+=++....++++++++..+.+-.+. .+...+.
T Consensus 249 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 249 CDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 999999999888876655566888899999888655554443 4444443
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=6e-06 Score=78.12 Aligned_cols=138 Identities=22% Similarity=0.219 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
..++..+..++...|..++.++..+.|.|.=. |.|+++. ....++ +.|..++.||++.+
T Consensus 42 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~----------------~g~~I~-d~i~~~~~~v~t~~ 100 (207)
T PRK12553 42 GQVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVT----------------AGDAIY-DTIQFIRPDVQTVC 100 (207)
T ss_pred ceECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHH----------------HHHHHH-HHHHhcCCCcEEEE
Confidence 45889999999999999987654444444211 2233321 122455 67888899999999
Q ss_pred cCccccchhHhhhccC--EEEeeCCceEeCCcccC-CCCCCcchh------------------hccccccC--HHHHHHH
Q 009256 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTL-GVIPGFGGT------------------QRLPRLVG--LSKAIEM 162 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~l~r~vG--~~~a~~l 162 (539)
.|.|.+.|.-++++|| .|++.+++.|.+..... |. ..|-. ..+...-| .....++
T Consensus 101 ~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~ 178 (207)
T PRK12553 101 TGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKD 178 (207)
T ss_pred EeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999999999 59999999998866543 21 11211 11222223 3556677
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-.+..++|+||+++||||+|+..
T Consensus 179 ~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 179 TDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HhcCccccHHHHHHcCCccEEcCc
Confidence 778999999999999999999854
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.5e-06 Score=80.30 Aligned_cols=104 Identities=19% Similarity=0.269 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 382 (539)
.+|+|||+|.||+.+|..|++.|+ +++++|.+ ++.+.+-. . ..-..|....+.....+..+....+.
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~--~-----~~~~iG~~Ka~~~~~~l~~inp~~~i~~ 94 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ--Y-----KASQVGEPKTEALKENISEINPYTEIEA 94 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc--C-----ChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 479999999999999999999999 79999999 54443310 0 00011221122223333333332222
Q ss_pred -----------cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 383 -----------SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 383 -----------~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+.++++|+||+| .++.+.+..+++++....+...++.
T Consensus 95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 246789999999 6899999999999888877766665
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-06 Score=82.89 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||+-+|..|++.|++|++++|+++.++...+. +.+ .....+... . -... ..+.+....+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~--~Gl-~i~~~g~~~------~-~~~~-~~~~~~~~~~ 71 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA--GGL-TLVEQGQAS------L-YAIP-AETADAAEPI 71 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc--CCe-EEeeCCcce------e-eccC-CCCccccccc
Confidence 379999999999999999999999999999988776665331 000 000011000 0 0011 1111335678
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS 436 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~ 436 (539)
|+||.|+- ..-....++.+.+++.+++.|++...++... .+...+.
T Consensus 72 D~viv~vK--~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~ 118 (305)
T PRK05708 72 HRLLLACK--AYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP 118 (305)
T ss_pred CEEEEECC--HHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence 99999984 3334567788999999999888888887764 4545443
|
|
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.8e-06 Score=81.90 Aligned_cols=161 Identities=17% Similarity=0.243 Sum_probs=99.8
Q ss_pred cCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
.+.|++|.++.+ ..+. ...+.+++...++.+..+ ..|||+-.. .|+.+... ......+
T Consensus 89 ~~~v~VI~~~G~I~~~~-~~~l~e~i~a~l~~A~~~---~aVvLridS----pGG~v~~s-------------~~a~~~l 147 (330)
T PRK11778 89 KPRLFVLDFKGDIDASE-VESLREEITAILAVAKPG---DEVLLRLES----PGGVVHGY-------------GLAASQL 147 (330)
T ss_pred CCeEEEEEEEEEECCCc-chhhHHHHHHHHHhccCC---CeEEEEEeC----CCCchhHH-------------HHHHHHH
Confidence 367999999876 3221 224556666666665533 467776432 12221110 0011223
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchh---------------------h-
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGT---------------------Q- 148 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------------~- 148 (539)
.++.+..||+++.+.+.|..||+.++++||-++|.+.+.+|...+... .|..... .
T Consensus 148 -~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~-~~~~~~lLeKlGI~~evi~aG~yK~a~~pf 225 (330)
T PRK11778 148 -QRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQ-IPNFHRLLKKHDIDVELHTAGEYKRTLTLF 225 (330)
T ss_pred -HHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeee-ccCHHHHHHHCCCceEEEEecCccCCCCCC
Confidence 457788999999999999999999999999999999997765444211 1221110 0
Q ss_pred ---------cc-----------cccc--CH-HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 009256 149 ---------RL-----------PRLV--GL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (539)
Q Consensus 149 ---------~l-----------~r~v--G~-~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (539)
.+ ...| ++ ....+-+.+|+.+++++|++.||||++...+++...+.+
T Consensus 226 ~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 226 GENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 00 0000 00 112345678999999999999999999988877654443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.8e-06 Score=87.55 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=75.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.||..+|..+...|.+|..||++....+... + ..+....++ +.+++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~-----------~-------------~g~~~~~~l~ell~~ 255 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEK-----------E-------------TGAKFEEDLDAMLPK 255 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHh-----------h-------------cCceecCCHHHHHhh
Confidence 4899999999999999999999999999998753222110 0 012223345 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|.+.+.+.-+-+++.+.++++++++..+-+-.+ ..+.+.+.
T Consensus 256 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 306 (386)
T PLN03139 256 CDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS 306 (386)
T ss_pred CCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH
Confidence 99999999988887766656788899999988865555443 34544443
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.2e-06 Score=84.36 Aligned_cols=98 Identities=22% Similarity=0.256 Sum_probs=67.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.||+|||+|.+|.++|..++..|. +++++|++++.++....++++.... . . ...+..++++++++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~-~--~----------~~~v~~~~dy~~~~ 70 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAF-L--K----------NPKIEADKDYSVTA 70 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhcc-C--C----------CCEEEECCCHHHhC
Confidence 389999999999999999998886 8999999987766554443322100 0 0 02455567888899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEE
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii 419 (539)
+||+||.+... +..+.+++.+++.++.+++.++
T Consensus 71 ~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vi 117 (312)
T cd05293 71 NSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILL 117 (312)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 99999986521 2234455566777886554433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.4e-06 Score=82.33 Aligned_cols=164 Identities=21% Similarity=0.279 Sum_probs=103.4
Q ss_pred cEEEEEeCCC-C--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 14 GVAIITLINP-P--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 14 ~v~~i~l~~p-~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
.|+.|.++.+ . .+.+..--.+.+.+.++.+..|+.++.|+|.=+ |-|+.... .....+.+
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~a-------------s~~i~~~l 122 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRIN----SPGGSVVA-------------SELIARAL 122 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhH-------------HHHHHHHH
Confidence 5888877655 1 122222345667778888889999999999633 11221110 01122333
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh----------------------
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ---------------------- 148 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------------- 148 (539)
+++..-. ||++.|+++|..||..++++||.+||++++..|---+..+. |......
T Consensus 123 -~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~ 199 (317)
T COG0616 123 -KRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGA-PNFEELLEKLGVEKEVITAGEYKDILSPF 199 (317)
T ss_pred -HHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEec-CCHHHHHHhcCCceeeeeccccccccCcc
Confidence 3344444 99999999999999999999999999999987754443331 2111100
Q ss_pred --------------------cc-----ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHH
Q 009256 149 --------------------RL-----PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWA 197 (539)
Q Consensus 149 --------------------~l-----~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 197 (539)
.+ ..+-.......-+.+|+.+++++|++.||||++-..++....+.+.+
T Consensus 200 ~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~ 273 (317)
T COG0616 200 RPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELA 273 (317)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHhc
Confidence 00 00001122245677999999999999999999987666555444443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-06 Score=76.37 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=65.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|+|+|.||.+++..|.+.| ++|+++|+++++.+...+.+... . + ... ..+. +.++
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-------~-~----------~~~-~~~~~~~~~ 80 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-------G-I----------AIA-YLDLEELLA 80 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-------c-c----------cee-ecchhhccc
Confidence 57999999999999999999986 79999999998877654432110 0 0 011 1222 4478
Q ss_pred CcCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 387 ~aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
++|+||.|+|.+.. .....+. ...+++++++++.++...
T Consensus 81 ~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~ 120 (155)
T cd01065 81 EADLIINTTPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPL 120 (155)
T ss_pred cCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCC
Confidence 99999999997664 1111111 123577888876655433
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=75.88 Aligned_cols=151 Identities=11% Similarity=0.023 Sum_probs=103.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c-CCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~ 386 (539)
.+|||||.|.||.-+|..+.++|+.|...||+. -+.+.+.+ +. ...+++ + .-+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~y----------------------g~-~~ft~lhdlcer 107 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKY----------------------GS-AKFTLLHDLCER 107 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHh----------------------cc-cccccHHHHHhc
Confidence 479999999999999999999999999999986 33333322 11 112222 2 236
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCCC-------CCee
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAHV-------MPLL 456 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~~-------~~~v 456 (539)
..|+|+.|+. ..-...+++..-.. ++.+++++..+|..... ...+-++..-.++..|++.+|.. .|+|
T Consensus 108 hpDvvLlcts--ilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfV 185 (480)
T KOG2380|consen 108 HPDVVLLCTS--ILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFV 185 (480)
T ss_pred CCCEEEEEeh--hhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceE
Confidence 7899999985 44445555554443 67789998877764443 34455666667899999887751 1333
Q ss_pred eee--cC-CCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 457 EIV--RT-ERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 457 ei~--~~-~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
-+- .+ ....+|.++.+.+++...|...|.+
T Consensus 186 ydkvRig~~~~r~ercE~fleIf~cegckmVem 218 (480)
T KOG2380|consen 186 YDKVRIGYAASRPERCEFFLEIFACEGCKMVEM 218 (480)
T ss_pred EEEeeccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 221 11 1234899999999999999988876
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.1e-05 Score=74.68 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=124.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc----c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY----S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~ 383 (539)
...|+.||++.||..++.+.+.+|+.|.+|+|...+.+.....-.+ + ..+....++ .
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--------~-----------~~i~ga~S~ed~v~ 66 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--------G-----------TKIIGAYSLEDFVS 66 (487)
T ss_pred ccchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--------C-----------CcccCCCCHHHHHH
Confidence 3479999999999999999999999999999999998887553211 1 012222222 2
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC-CChH-H-HhhccCCCCcEEEeccCC---CCCCCCeee
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST-IDLN-I-VGEKTSSQDRIIGAHFFS---PAHVMPLLE 457 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~-~~~~-~-i~~~~~~~~r~vg~h~~~---p~~~~~~ve 457 (539)
-++.--.|+..+-.-. ....++++|.+++.++.+|++...+ .+-+ . ..+.....--|+|+..-. .++.+|.
T Consensus 67 klk~PR~iillvkAG~-pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-- 143 (487)
T KOG2653|consen 67 KLKKPRVIILLVKAGA-PVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-- 143 (487)
T ss_pred hcCCCcEEEEEeeCCC-cHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc--
Confidence 2455667776664332 3557788999999999888864432 3322 1 111222333466665421 2222222
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCce-----e--EEEcC-cccc----hhhcch---HHHHHHHHHHHHc--CCCHHHHHH
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKV-----P--VVVGN-CTGF----AVNRAF---FPYSQSARLLVSL--GVDVFRIDS 520 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~-----~--v~v~~-~~g~----v~nrl~---~~~~~Ea~~l~~~--G~~~~~id~ 520 (539)
++|| .++++...++++++.+... | .++++ ..|. |-|-+- +.++.|++.+... |.+-++|.+
T Consensus 144 lMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~ 221 (487)
T KOG2653|consen 144 LMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAE 221 (487)
T ss_pred cCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 3444 4899999999999876432 2 45554 3443 336553 3688899999987 578888888
Q ss_pred HHHhC
Q 009256 521 AIRSF 525 (539)
Q Consensus 521 a~~~~ 525 (539)
++..+
T Consensus 222 vF~~W 226 (487)
T KOG2653|consen 222 VFDDW 226 (487)
T ss_pred HHHhh
Confidence 87433
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.3e-05 Score=78.84 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=100.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|+|+|.||+-++..|+++|++|+++.|++. +++.++. |.. ..... ..........+.+....
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~-----------GL~i~~~~~-~~~~~~~~~~~~~~~~~ 67 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK-----------GLRIEDEGG-NFTTPVVAATDAEALGP 67 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC-----------CeEEecCCC-ccccccccccChhhcCC
Confidence 4899999999999999999999988998888875 5555331 110 00000 00011122233356779
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhhccCCCCcEEEeccCCCCCCCCeeeee-------
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGAHFFSPAHVMPLLEIV------- 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~-i~~~~~~~~r~vg~h~~~p~~~~~~vei~------- 459 (539)
+|+||.++- .-...++++.+.+++++++.|++...++...+ +....+...-+.|+-+.......+.....
T Consensus 68 ~Dlviv~vK--a~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ 145 (307)
T COG1893 68 ADLVIVTVK--AYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTV 145 (307)
T ss_pred CCEEEEEec--cccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEE
Confidence 999999884 44466888999999999998888888877665 33333332224444433322222111111
Q ss_pred --cCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 460 --RTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 460 --~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
....-.++.++.+.+.|+..|....+..|
T Consensus 146 ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~d 176 (307)
T COG1893 146 IGELRGGRDELVKALAELFKEAGLEVELHPD 176 (307)
T ss_pred EccCCCCchHHHHHHHHHHHhCCCCeEEcHH
Confidence 11112336677777777777766555444
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.8e-06 Score=85.30 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=54.2
Q ss_pred ceEEEEcCCCCcHHHHH--HHH----HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIAT--AHI----LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~--~l~----~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|.||...+. .++ -.|.+|+++|+++++++.....++..+... + . ..+++.++|.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~---~-~--------~~~i~~ttD~ 69 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESL---G-A--------SAKITATTDR 69 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhc---C-C--------CeEEEEECCH
Confidence 58999999999966665 443 246799999999999886544443332221 1 1 1357778885
Q ss_pred -cCCCCcCEEEEccc
Q 009256 383 -SEFKDVDMVIEAVI 396 (539)
Q Consensus 383 -~~~~~aDlVi~avp 396 (539)
+++++||+||+++-
T Consensus 70 ~eal~dADfVv~ti~ 84 (431)
T PRK15076 70 REALQGADYVINAIQ 84 (431)
T ss_pred HHHhCCCCEEeEeee
Confidence 88999999998874
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.9e-06 Score=72.77 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=72.7
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc---cCCc-cCCC
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDY-SEFK 386 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~-~~~~ 386 (539)
|+|+|+|.||.-+|..|.+.|++|+++++++ .++...+.- + .+.... .+ ..+.. ..+. +...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g---~--~~~~~~--~~------~~~~~~~~~~~~~~~~~ 66 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQG---L--TITGPD--GD------ETVQPPIVISAPSADAG 66 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHC---E--EEEETT--EE------EEEEEEEEESSHGHHHS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhee---E--EEEecc--cc------eecccccccCcchhccC
Confidence 7899999999999999999999999999998 666643310 0 000000 00 00111 1111 2457
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhhccC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTS 436 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~-i~~~~~ 436 (539)
.+|+||.|+. ......+++.+.+++.+++.|++...++...+ +.+..+
T Consensus 67 ~~D~viv~vK--a~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~~ 115 (151)
T PF02558_consen 67 PYDLVIVAVK--AYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYFP 115 (151)
T ss_dssp TESEEEE-SS--GGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHST
T ss_pred CCcEEEEEec--ccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHcC
Confidence 8999999986 33345678889999999988888888877654 444443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.9e-06 Score=83.05 Aligned_cols=97 Identities=24% Similarity=0.279 Sum_probs=66.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..++..|. +++++|++++.++....++++..... . . -.+. ++++++++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~-~-~-----------~~i~-~~~~~~~~ 72 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT-S-P-----------TKIY-AGDYSDCK 72 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc-C-C-----------eEEE-eCCHHHhC
Confidence 489999999999999999999998 89999999888766555443322100 0 0 1233 45668899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+||+||.+.-. +..+.+++..++.++.+. ++++
T Consensus 73 ~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~-~~vi 119 (315)
T PRK00066 73 DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFD-GIFL 119 (315)
T ss_pred CCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEE
Confidence 99999987632 233445556667777654 4443
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.8e-06 Score=83.45 Aligned_cols=98 Identities=26% Similarity=0.371 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|+++|..++..|. +++++|++++.++....++.+... .. +. ..+..+.++++++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~-~~--~~----------~~i~~~~dy~~~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAA-FL--PR----------TKILASTDYAVTA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhh-cC--CC----------CEEEeCCCHHHhC
Confidence 599999999999999999998886 899999998876655444432210 00 00 1344445778899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEE
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCIL 419 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii 419 (539)
+||+||.+... +..+.+++.+.+.++.++..++
T Consensus 105 daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivi 151 (350)
T PLN02602 105 GSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151 (350)
T ss_pred CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 99999988521 2234455566677776555433
|
|
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=2e-05 Score=73.80 Aligned_cols=140 Identities=21% Similarity=0.206 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++..+...+.+.|..++..+..+.|.|.=. |-|+++. ....++ +.|...+.||++.+.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~----------------ag~aI~-d~i~~~~~~V~t~v~ 89 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDID----------------AGFAIF-NMIRFVKPKVFTIGV 89 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhCCCCEEEEEE
Confidence 4778888999999988876333344444211 2233321 122455 678889999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l~l 164 (539)
|.|.+.|.-++++||- |++.++++|..-...-++. |.+. .+...-| .....+++-
T Consensus 90 G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~---G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~ 166 (197)
T PRK14512 90 GLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFK---GVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTD 166 (197)
T ss_pred eeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhh
Confidence 9999999999999985 8999999886544322221 1111 0111222 244556666
Q ss_pred cCCCCCHHHHHHcCCcceecCc-chHH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTS-EELL 190 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~-~~l~ 190 (539)
....++|+||+++||||+|++. +++.
T Consensus 167 ~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 167 RDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred cCcccCHHHHHHcCCccEeecCcHHhH
Confidence 6788999999999999999965 3443
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.8e-06 Score=82.65 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=67.6
Q ss_pred EEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 311 VAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
|+|||+|.+|+++|..++..| .+++++|+++++++....++++..... . ...+..+++++++++|
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~----------~~~i~~~~~~~~l~~a 67 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---A----------TGTIVRGGDYADAADA 67 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---C----------CCeEEECCCHHHhCCC
Confidence 689999999999999999998 589999999988776655443322110 0 0134434557899999
Q ss_pred CEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 389 DMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 389 DlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
|+||.+... +..+.+++..++.++. |+++++
T Consensus 68 DiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~vi 112 (300)
T cd00300 68 DIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIIL 112 (300)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEE
Confidence 999998842 2334556667788887 444444
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.07 E-value=3e-06 Score=78.50 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=71.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+...|.+|+.||++......... .... ..++ +.++.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~------------------------~~~~-~~~l~ell~~ 91 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE------------------------FGVE-YVSLDELLAQ 91 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH------------------------TTEE-ESSHHHHHHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc------------------------ccce-eeehhhhcch
Confidence 58999999999999999999999999999999875442110 1111 2244 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|-..+...-+=++....++++++++..+-+-.+ ..+...+.
T Consensus 92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence 99999999976665444445677789999988865554333 34555443
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.9e-05 Score=70.72 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--ecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.++.++..++...|-.++.++..+-|.+ .+.| +|+. ....++ +.|...+.||...
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~----------------~g~aIy-d~m~~~~~~V~Tv 94 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVI----------------SGLAIY-DTMQFVKPDVHTI 94 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchh----------------hHHHHH-HHHHhcCCCEEEE
Confidence 4899999999999999876544444444 3333 3221 122455 6788999999999
Q ss_pred EcCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcch-h-----------------hccccccC--HHHHHHH
Q 009256 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGG-T-----------------QRLPRLVG--LSKAIEM 162 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~-~-----------------~~l~r~vG--~~~a~~l 162 (539)
+-|.|.+.|.-|++++| -|++.++++|.+-....|.. .|- + ..+...-| .....++
T Consensus 95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~ 172 (200)
T CHL00028 95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED 172 (200)
T ss_pred EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999 69999999998876554421 121 1 11122222 2444566
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
+-....++|+||+++||||+|+.+.
T Consensus 173 ~~r~~~lta~EA~eyGliD~I~~~~ 197 (200)
T CHL00028 173 MERDVFMSATEAKAYGIVDLVAVNN 197 (200)
T ss_pred hhcCccCCHHHHHHcCCCcEEeecC
Confidence 6777889999999999999998543
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.8e-06 Score=80.31 Aligned_cols=114 Identities=22% Similarity=0.199 Sum_probs=82.2
Q ss_pred CCCcceEEEEcCCCCcHHHHHHHHHC--CC-----eEEEEeCChHHHH---HHHHHHHHH--HHhhHhcCCCCHHHHHHH
Q 009256 305 PRGVRKVAVIGGGLMGSGIATAHILN--NI-----YVVLKEVNSEYLL---KGIKTIEAN--VRGLVTRGKLTQDKANNA 372 (539)
Q Consensus 305 ~~~~~kI~iIG~G~mG~~iA~~l~~~--G~-----~V~~~d~~~~~~~---~~~~~i~~~--~~~~~~~~~~~~~~~~~~ 372 (539)
.+...||+|||.|+||++||+.+..+ ++ +|..|-..++.-. .+.+-|+.. --+|+....+.
T Consensus 18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP------- 90 (372)
T KOG2711|consen 18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLP------- 90 (372)
T ss_pred hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCC-------
Confidence 34456899999999999999988764 22 6888866554333 333333221 11333333332
Q ss_pred hhcccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 373 LKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 373 ~~~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
.++..++|+ +++.+||++|-.+| .+....++++|..++++++..+|.+.++..
T Consensus 91 -~NvvAv~dl~ea~~dADilvf~vP--hQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 91 -ENVVAVPDLVEAAKDADILVFVVP--HQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred -CCeEecchHHHHhccCCEEEEeCC--hhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 457778888 88999999999999 677889999999999999988888777664
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.5e-06 Score=77.63 Aligned_cols=140 Identities=20% Similarity=0.291 Sum_probs=93.6
Q ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEE--EecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIV--LTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vv--l~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.|+.| ++.++...+.+.|..++.++..+-+. |.+ .|+|+.. ...+. +.|.
T Consensus 19 i~l~g~----I~~~~~~~~~~~L~~l~~~~~~~~i~i~INS------pGG~v~~----------------g~~i~-~~i~ 71 (182)
T PF00574_consen 19 IFLNGP----IDEESANRLISQLLYLENEDKNKPINIYINS------PGGDVDA----------------GLAIY-DAIR 71 (182)
T ss_dssp EEEESS----BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEE------CEBCHHH----------------HHHHH-HHHH
T ss_pred EEECCc----cCHHHHHHHHHHHHHHhccCCCceEEEEEcC------CCCccHH----------------HHHHH-HHHH
Confidence 445554 88899999999888774332222222 333 3344321 23455 7789
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh-----------------cccccc--
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ-----------------RLPRLV-- 154 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~v-- 154 (539)
.++.|+++.+.|.|.+.|.-++++||. |++.+++.|.+-+...+... .... .+...-
T Consensus 72 ~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~tg~ 149 (182)
T PF00574_consen 72 SSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAERTGL 149 (182)
T ss_dssp HSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hcCCCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999 89999999998877554321 1111 111111
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCc
Q 009256 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 155 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
......+++-....++|+||+++||||+|+..
T Consensus 150 ~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 150 SKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp -HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred cHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 23444556666778899999999999999753
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=80.63 Aligned_cols=97 Identities=24% Similarity=0.342 Sum_probs=65.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
||+|||+|.+|.++|..++..| .+|+++|+++++++.....+... ...... ..+ .+++++++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~-------~~~~~~------~~i-~~~d~~~l~~ 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHG-------TPFVKP------VRI-YAGDYADCKG 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcc-------ccccCC------eEE-eeCCHHHhCC
Confidence 7999999999999999999999 58999999988765322222111 000000 112 2456688999
Q ss_pred cCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 388 aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
||+||.+++. +....+++.+++.++.+.+.+++
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv 114 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLV 114 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 9999999864 33345566677888776655443
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=78.46 Aligned_cols=102 Identities=15% Similarity=0.089 Sum_probs=72.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|||||+|.+|+.+|..+..-|.+|.+||+ .+...... .......++ +.++
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~--------------------------~~~~~~~~Ld~lL~ 196 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV--------------------------DGVVGVDSLDELLA 196 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc--------------------------ccceecccHHHHHh
Confidence 5899999999999999999999999999999 43322211 112223344 5689
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
.||+|+..+|-..+.+.-+=++....++++++++..+-+-.+ ..+...+.
T Consensus 197 ~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 197 EADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred hCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence 999999999988876555546677789999987744434333 34544443
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=73.49 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=111.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
++|++||+|.|..+++..+...|. +++.+-.+......-. -.. +.-.+.++.+.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~----------~~~------------g~~~~~~n~~~ 58 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMF----------EAL------------GVKTVFTNLEV 58 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhh----------hcC------------CceeeechHHH
Confidence 379999999999999999999986 4555544222211100 011 22223333467
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTER 463 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~~~ 463 (539)
++.+|+++.++- +.....++.++...+..+.|++|...+..++.+...++.+.|++...++.|..++.... +..+..
T Consensus 59 ~~~s~v~~~svK--p~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~ 136 (267)
T KOG3124|consen 59 LQASDVVFLSVK--PQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCH 136 (267)
T ss_pred HhhccceeEeec--chhHHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCC
Confidence 789999999984 66677777777666667779999999999999988888778999999999988776666 345677
Q ss_pred CcHHHHHHHHHHHHHcCcee
Q 009256 464 TSAQVILDLMTVGKIIKKVP 483 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~ 483 (539)
...+..+.+.+++...|.-.
T Consensus 137 ~~~~D~~l~~~ll~~vG~~~ 156 (267)
T KOG3124|consen 137 ATNEDLELVEELLSAVGLCE 156 (267)
T ss_pred cchhhHHHHHHHHHhcCcce
Confidence 78888899999999999643
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00038 Score=67.67 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-.++++-++...+.++.+++. .+-+|-|.=.++++. |.+-. ..-......+.+ ..+...++|+|+.|
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~-~lPvV~lvDtpGa~~-g~~aE----------~~G~~~~ia~~~-~~~s~~~VP~IsVI 143 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKF-GRPVVTFINTAGAYP-GVGAE----------ERGQGEAIARNL-MEMSDLKVPIIAII 143 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CHhHH----------hccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467788888888888888765 455665543333332 33211 001122233444 45788899999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccc-cCHHHHHHHHHcCCCCCHHHHHHcCCcceec
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGLSKAIEMMLLSKSITSEEGWKLGLIDAVV 184 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv 184 (539)
-|.|.|||......||++++.+++.|+. +++-|.+..+-+- --...+.+.+ .+++.++++.|+||+|+
T Consensus 144 ~G~~~gGgA~a~~~~D~v~m~~~a~~~v-------~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ii 212 (256)
T PRK12319 144 IGEGGSGGALALAVADQVWMLENTMYAV-------LSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDKVI 212 (256)
T ss_pred eCCcCcHHHHHhhcCCEEEEecCceEEE-------cCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcEec
Confidence 9999999888888999999999988764 2223333333221 1112223333 77999999999999999
Q ss_pred Ccc
Q 009256 185 TSE 187 (539)
Q Consensus 185 ~~~ 187 (539)
|+.
T Consensus 213 ~e~ 215 (256)
T PRK12319 213 PEH 215 (256)
T ss_pred CCC
Confidence 753
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=69.91 Aligned_cols=99 Identities=14% Similarity=0.235 Sum_probs=77.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEE
Q 009256 23 PPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIV 102 (539)
Q Consensus 23 p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~i 102 (539)
|-.+.++.+..+++.++++....+..+- ++|.. -|+++. ...++. +.|.+++.|++
T Consensus 67 Pi~~~I~i~dse~v~raI~~~~~~~~Id-Lii~T------pGG~v~----------------AA~~I~-~~l~~~~~~v~ 122 (285)
T PF01972_consen 67 PIYRYIDIDDSEFVLRAIREAPKDKPID-LIIHT------PGGLVD----------------AAEQIA-RALREHPAKVT 122 (285)
T ss_pred ccceeEcHhhHHHHHHHHHhcCCCCceE-EEEEC------CCCcHH----------------HHHHHH-HHHHhCCCCEE
Confidence 3346788999999999999887766553 33432 233221 112344 66889999999
Q ss_pred EEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcc
Q 009256 103 AAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG 145 (539)
Q Consensus 103 aav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g 145 (539)
+.|+..|+.+|.-+||+||-+++++.+.+|--...+|-.|..+
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 9999999999999999999999999999999999999888644
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.2e-05 Score=69.47 Aligned_cols=138 Identities=20% Similarity=0.161 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++.++...+...|..++.++..+-|.+.=. |.|+|+. ....++ +.|...+.||...+-
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~----------------~g~~I~-d~l~~~~~~v~t~~~ 92 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSIT----------------AGLAIY-DTMQFIKPDVSTICI 92 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEE
Confidence 3677788888888888887654444544311 1233321 123455 667778888888889
Q ss_pred CccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchh---------------hccccccC--HHHHHHHHHcCC
Q 009256 107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGT---------------QRLPRLVG--LSKAIEMMLLSK 167 (539)
Q Consensus 107 G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~vG--~~~a~~l~l~g~ 167 (539)
|.|.+.|.-+++++| .|++.++++|.+-+..-|......-. ..+.+.-| .....+++-.+.
T Consensus 93 G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~ 172 (191)
T TIGR00493 93 GQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDF 172 (191)
T ss_pred EeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCc
Confidence 999999999999766 69999999998866543321111100 01222333 355667777889
Q ss_pred CCCHHHHHHcCCcceecC
Q 009256 168 SITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 168 ~~~a~eA~~~Glv~~vv~ 185 (539)
.++|+||+++||||+|+.
T Consensus 173 ~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 173 FMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred cCcHHHHHHcCCccEEec
Confidence 999999999999999974
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.7e-05 Score=78.45 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=56.4
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||.| .||.+||..|.++|++|++|++....++ +.++.
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~-------------------------------------e~~~~ 202 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAK-------------------------------------ALCRQ 202 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHH-------------------------------------HHHhc
Confidence 489999996 9999999999999999999986643211 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++....+.... +++++++++.+..
T Consensus 203 ADIVIsavg~~~~v~~~~-------ik~GaiVIDvgin 233 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW-------LKPGAVVIDVGIN 233 (301)
T ss_pred CCEEEEecCChhcccHhh-------ccCCcEEEEeccc
Confidence 999999998655443332 7899998876533
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.6e-05 Score=78.39 Aligned_cols=74 Identities=20% Similarity=0.287 Sum_probs=52.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
||+|||+|.+|.++|..++..|. +++++|++++.++.....+.+..... ... + -.+. +.+++++++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~-~~~--~--------~~i~-~~~y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALT-YST--N--------TKIR-AGDYDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccC-CCC--C--------EEEE-ECCHHHhCC
Confidence 69999999999999999999886 89999999887665444332211000 000 0 1233 456789999
Q ss_pred cCEEEEcc
Q 009256 388 VDMVIEAV 395 (539)
Q Consensus 388 aDlVi~av 395 (539)
||+||.+.
T Consensus 69 aDivvita 76 (307)
T cd05290 69 ADIIVITA 76 (307)
T ss_pred CCEEEECC
Confidence 99999886
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.4e-05 Score=86.65 Aligned_cols=103 Identities=16% Similarity=0.050 Sum_probs=72.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|+.||+.... +... +.+ ....+++ +.+++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~~~l~ell~~ 193 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAE-----------QLG-------------VELVDDLDELLAR 193 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEcCCHHHHHhh
Confidence 58999999999999999999999999999985321 1110 001 1222344 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+ ..+...+.
T Consensus 194 aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 244 (525)
T TIGR01327 194 ADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE 244 (525)
T ss_pred CCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH
Confidence 99999999987776554445667789999988865555333 35555443
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.8e-05 Score=78.45 Aligned_cols=123 Identities=22% Similarity=0.230 Sum_probs=75.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
+||+|+|+ |.+|..++..++..|+ +|+++|+++ +.++.....+. +.+...+. ..+++.+++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~---d~~~~~~~---------~~~i~~~~d~~ 68 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY---DALAAAGI---------DAEIKISSDLS 68 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh---hchhccCC---------CcEEEECCCHH
Confidence 48999998 9999999999999987 599999965 33333222221 11111110 01355566677
Q ss_pred CCCCcCEEEEcccC------C-h-------hHHHHHHHHHHHhCCCCeEEEecCCCCChHH--HhhccCC-CCcEEEe
Q 009256 384 EFKDVDMVIEAVIE------S-V-------PLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSS-QDRIIGA 444 (539)
Q Consensus 384 ~~~~aDlVi~avpe------~-~-------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~--i~~~~~~-~~r~vg~ 444 (539)
++++||+||.++.. + . ...+.+.+.|.++.+ +.+++..++..++.. +...... +.+++|+
T Consensus 69 ~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~~npvd~~t~~~~~~~g~~~~~viG~ 145 (309)
T cd05294 69 DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVVTNPVDVMTYKALKESGFDKNRVFGL 145 (309)
T ss_pred HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCchHHHHHHHHHhcCCCHHHEeec
Confidence 89999999999841 1 1 335555666777775 555555666655443 2222222 3456665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.1e-05 Score=77.02 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=67.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|+++|..|...++ ++.++|++++..+.-..++.+..... .....+....++++++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~------------~~~~~i~~~~~y~~~~ 68 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPL------------GSDVKITGDGDYEDLK 68 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhc------------cCceEEecCCChhhhc
Confidence 489999999999999999987754 89999999665444322222111000 0002233334478999
Q ss_pred CcCEEEEcc--cC------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~av--pe------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++|+|+++. |- +..+.+++.+++.++.++ .+++..|..
T Consensus 69 ~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivlVvtNP 120 (313)
T COG0039 69 GADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVLVVTNP 120 (313)
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEEEecCc
Confidence 999999887 32 445666666778888774 444433433
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.4e-05 Score=76.91 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=61.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|+|.||..+|..|...|.+|++++|+++..+.+.+ .+. . .+. ..++ +.+++
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~-----------~g~-~---------~~~-~~~l~~~l~~ 209 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITE-----------MGL-I---------PFP-LNKLEEKVAE 209 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CCC-e---------eec-HHHHHHHhcc
Confidence 48999999999999999999999999999999876544311 110 0 000 1122 45789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+|+||.++|...- -++..+.+++++++++.++
T Consensus 210 aDiVint~P~~ii-----~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 210 IDIVINTIPALVL-----TADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCEEEECCChHHh-----CHHHHhcCCCCeEEEEeCc
Confidence 9999999984321 1334456777887776555
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=2e-05 Score=85.39 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=72.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|++||+.... +... ..+ +... ++ +.++.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 194 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAA-----------QLG-------------VELV-SLDELLAR 194 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHH-----------hcC-------------CEEE-cHHHHHhh
Confidence 58999999999999999999999999999986421 1110 001 1222 34 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+ ..+...+.
T Consensus 195 aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 195 ADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred CCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh
Confidence 99999999988776655546788889999988865555443 34544443
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.1e-05 Score=90.43 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=48.2
Q ss_pred CcccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 488 NCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 488 ~~~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
..+||++||++.+++||+.+++++|+ +++|||.++ .++|||. |||+++|.++
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~G 663 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLG 663 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhC
Confidence 46899999999999999999999996 999999999 8999995 9999999764
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00064 Score=69.35 Aligned_cols=138 Identities=16% Similarity=0.086 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
.+++++-++.....++.++.. .+-+|-|-=.++ |..|.+-.+.. ......+.+ ..+....+|+|+.|
T Consensus 200 G~~~peGyRKAlR~mklAekf-~lPIVtLVDTpG-A~pG~~AEe~G----------qa~aIAr~l-~ams~l~VPiISVV 266 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKF-GFPILTFVDTPG-AYAGIKAEELG----------QGEAIAFNL-REMFGLRVPIIATV 266 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCC-cCCCHHHHHHh----------HHHHHHHHH-HHHhcCCCCEEEEE
Confidence 468899999999999988765 345555532222 32333322210 111222344 45789999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.+.+||.....+||++++.+++.++. +-|.+..+..+...--...|.+ .-.++|+++++.|+||+|+|
T Consensus 267 iGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~II~ 336 (431)
T PLN03230 267 IGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEIVP 336 (431)
T ss_pred eCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEecc
Confidence 9999777655555789999999988763 1244444443333222223333 34899999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
+
T Consensus 337 E 337 (431)
T PLN03230 337 E 337 (431)
T ss_pred C
Confidence 4
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.1e-05 Score=90.64 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=48.5
Q ss_pred CcccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 488 NCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 488 ~~~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
-.+||+.||++.+++||+++++++|+ +++|||.++ .++|||+ |||+++|.++
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~G 670 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLG 670 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhC
Confidence 46899999999999999999999996 999999999 8999997 9999999764
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.3e-05 Score=78.21 Aligned_cols=107 Identities=15% Similarity=0.146 Sum_probs=67.8
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK 377 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (539)
..||+|||+ |.+|.++|..+...|. +++++|++++ +++....++.+....... . -.++
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~-~-----------~~i~ 71 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLA-G-----------VVIT 71 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcC-C-----------cEEe
Confidence 359999998 9999999999988765 7999999653 233322222211100000 0 1222
Q ss_pred ccCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 378 ~~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
..+++++++||+||.+..- +..+.+++..+|.++.+++.+++..+....
T Consensus 72 -~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 72 -DDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred -cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 3556899999999987631 234456666778888877777665554433
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=65.58 Aligned_cols=138 Identities=17% Similarity=0.072 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-.++++-++.....++.++.. .+-+|-|-=.++ |-.|.+-.+.. ......+.+ ..+....+|+|+.|
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpG-a~~g~~aE~~G----------~~~aia~~l-~a~s~~~VP~IsVV 196 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERF-KMPIITFIDTPG-AYPGIGAEERG----------QSEAIARNL-REMARLGVPVICTV 196 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCC-CCCCHHHHHHH----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 467888999999988888765 455555543333 33343322110 112222344 45788999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.|.|||..-...||++++.+++.++. +++-|.+..|-+- ..++.+..- -..++++++++.|+||.|+|
T Consensus 197 iGeggsGGAla~~~aD~v~m~~~a~~sV-------isPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~II~ 266 (316)
T TIGR00513 197 IGEGGSGGALAIGVGDKVNMLEYSTYSV-------ISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSIIP 266 (316)
T ss_pred ecccccHHHhhhccCCEEEEecCceEEe-------cCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEecc
Confidence 9999888875555699999999988763 3333333333331 122322222 36778999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
+
T Consensus 267 e 267 (316)
T TIGR00513 267 E 267 (316)
T ss_pred C
Confidence 4
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=65.50 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=90.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-.++++-+......++.++.. .+-+|-|--.+++++ |.+-.+.. ......+.+ ..+....+|+|+.|
T Consensus 133 G~~~p~g~rKa~Rlm~lA~~f-~lPIItlvDTpGA~~-G~~AE~~G----------~~~aiar~l-~~~a~~~VP~IsVV 199 (322)
T CHL00198 133 GMPSPGGYRKALRLMKHANKF-GLPILTFIDTPGAWA-GVKAEKLG----------QGEAIAVNL-REMFSFEVPIICTI 199 (322)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCcCc-CHHHHHHh----------HHHHHHHHH-HHHHcCCCCEEEEE
Confidence 467899999999999988765 345555543333333 33221100 111222333 34678999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.|.|||......||++++.+++.|+. +-|.++.+..+.. ..+|.+ ....-.++|++.+++|+||+|+|
T Consensus 200 iGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~ 269 (322)
T CHL00198 200 IGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIP 269 (322)
T ss_pred eCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEecc
Confidence 9999888865555699999999998874 2244444433332 234433 34556899999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
+
T Consensus 270 E 270 (322)
T CHL00198 270 E 270 (322)
T ss_pred C
Confidence 4
|
|
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=97.80 E-value=1.9e-05 Score=71.28 Aligned_cols=102 Identities=27% Similarity=0.340 Sum_probs=65.9
Q ss_pred HHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCccc------------CCCC---------CCcchh-----
Q 009256 94 IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELT------------LGVI---------PGFGGT----- 147 (539)
Q Consensus 94 i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~------------~Gl~---------p~~g~~----- 147 (539)
..+..|||+|.++|.|..+|+.|+.+||-+++.+.+.++..-+. +|+- ...+.+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 45789999999999999999999999999999999877764433 2321 111100
Q ss_pred ----hcc-----------------ccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 009256 148 ----QRL-----------------PRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (539)
Q Consensus 148 ----~~l-----------------~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (539)
..+ .|-+... ..+-+..|..+++++|++.||||++-..+++...+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~-~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPD-DVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HH-HHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHH-HHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 000 1111111 12335789999999999999999999888877666554
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=75.98 Aligned_cols=103 Identities=15% Similarity=0.155 Sum_probs=71.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-------CC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-------NI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-------G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~- 377 (539)
-||+|||+ |.+|..+|..++.. |+ +++++|++++.++...-++++....+. ..+.
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~--------------~~v~i 166 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL--------------REVSI 166 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc--------------CceEE
Confidence 48999999 99999999999988 66 899999999987766555443321111 1233
Q ss_pred ccCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 378 ~~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+.+++++++||+||.+..- +..+.+++.+.|.++..++.+++..+..
T Consensus 167 ~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 167 GIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred ecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 24566999999999987621 2334555666677755667766655543
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.001 Score=66.39 Aligned_cols=138 Identities=18% Similarity=0.126 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-+++++-++.....++.++.. .+-+|-|.=.+++++ |.+-.+ .-......+.+ ..+....+|+|+.|
T Consensus 130 G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~----------~G~~~aia~~l-~~~a~~~VP~IsVI 196 (319)
T PRK05724 130 GMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE----------RGQSEAIARNL-REMARLKVPIICTV 196 (319)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh----------ccHHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467889898888888888765 455666643333333 432211 00112233444 55789999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.|.|||..-...||++++.+++.|+ ++++-|.+..|-+- ..++.+..- ...+++.++++.|+||+|+|
T Consensus 197 iGeg~sGGAla~~~aD~v~m~~~A~~s-------visPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~II~ 266 (319)
T PRK05724 197 IGEGGSGGALAIGVGDRVLMLEYSTYS-------VISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDEIIP 266 (319)
T ss_pred eCCccHHHHHHHhccCeeeeecCceEe-------ecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceEecc
Confidence 999988887555569999999998876 33334444444332 233444333 66689999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
+
T Consensus 267 E 267 (319)
T PRK05724 267 E 267 (319)
T ss_pred C
Confidence 4
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.9e-05 Score=78.59 Aligned_cols=115 Identities=11% Similarity=0.055 Sum_probs=73.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|++||++.......... ...... ...........++ +.++.
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~~L~ell~~ 226 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLL--------IPNGDV-----DDLVDEKGGHEDIYEFAGE 226 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhc--------cccccc-----cccccccCcccCHHHHHhh
Confidence 589999999999999999999999999999974321110000 000000 0000000012234 66899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+.++|-..+...-+-++....++++++++..+-+-. -..+...+.
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998777655444667788999999886555433 335555444
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=67.23 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEE--ecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVL--TGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.++..+...+...|..++..+.-+-|.+ .+-|+...+ ...++ +.|...+.||...
T Consensus 62 ~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~a----------------------GlaIy-d~m~~~~~~V~tv 118 (221)
T PRK14514 62 QIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYA----------------------GLGIY-DTMQFISSDVATI 118 (221)
T ss_pred EEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhh----------------------HHHHH-HHHHhcCCCEEEE
Confidence 4777888888887766654332222322 333321111 12455 6788899999999
Q ss_pred EcCccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHH
Q 009256 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l 162 (539)
+-|.|.+.|.-|++++|. |++.++++|.+-...-|.. |-+. .+...-| .....++
T Consensus 119 ~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~---G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~ 195 (221)
T PRK14514 119 CTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ---GQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWAD 195 (221)
T ss_pred EEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 999999999999999996 8999999988766543321 1111 1122223 2445566
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-....++|+||+++||||+|+..
T Consensus 196 ~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 196 SDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred hhcCccCCHHHHHHcCCccEEeec
Confidence 677889999999999999999853
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=74.24 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=75.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+...|.+|..||+.....+ ..+. ..++ +.++.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~----------------------------~~~~-~~~l~ell~~ 196 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN----------------------------EEYE-RVSLEELLKT 196 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc----------------------------cCce-eecHHHHhhc
Confidence 5899999999999999999989999999998632100 0011 1133 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCC-CcEEEeccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQ-DRIIGAHFF 447 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~-~r~vg~h~~ 447 (539)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+- .-..+...+... -. .++..|
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~ 258 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL 258 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence 999999999877765555566778899999987555443 334555555432 23 455544
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.3e-05 Score=80.77 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=67.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||..+|..+...|++|.+||+.....+. ... ..++ +.+++
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~~----------------------------~~~-~~~l~ell~~ 167 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEG----------------------------DGD-FVSLERILEE 167 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccccc----------------------------Ccc-ccCHHHHHhh
Confidence 58999999999999999999999999999985431100 011 1233 55689
Q ss_pred cCEEEEcccCChh---HHHHHH-HHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~---~~~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|-..+ ....++ ++....++++++++..+-+-.+ ..+...+
T Consensus 168 aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL 221 (381)
T PRK00257 168 CDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREAL 221 (381)
T ss_pred CCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHH
Confidence 9999999996552 123334 4566778999988865555443 3444444
|
|
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0015 Score=64.88 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=105.1
Q ss_pred cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-..|.-|.|. .-+++...-+.+..+++.+... .+-+|.|.-.| |+.++|-. .....+.+.. ..
T Consensus 119 ~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqEgi-----~sL~~~ak~~-~a 186 (292)
T PRK05654 119 EGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQEGL-----LSLMQMAKTS-AA 186 (292)
T ss_pred CCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhhhh-----hHHHhHHHHH-HH
Confidence 4444445556664 4899999999999999998766 46677776444 22222200 0001111111 22
Q ss_pred HHHHHHhCCCcEEEEEcCccccchh-HhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~ 168 (539)
+ .++.....|.|+.+.|+|+||+. ..++.+|+++|.++|.+++...+ .+...+|. + + .-+.
T Consensus 187 ~-~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e----~-l-pe~~ 248 (292)
T PRK05654 187 L-KRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE----K-L-PEGF 248 (292)
T ss_pred H-HHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh----h-h-hhhh
Confidence 2 33667789999999999999975 45778999999999988763221 01111111 0 0 1112
Q ss_pred CCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 009256 169 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 169 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
-+++-+.+.|+||.|+++.++.....++.+.+...+
T Consensus 249 ~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 249 QRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQP 284 (292)
T ss_pred cCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence 267777899999999999999998888888765543
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=65.96 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=56.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+++.|+|.|..|.++|..|...|.+|+++|++|-++-++.. +.....+-.+++..+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~------------------------dGf~v~~~~~a~~~a 79 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM------------------------DGFEVMTLEEALRDA 79 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH------------------------TT-EEE-HHHHTTT-
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh------------------------cCcEecCHHHHHhhC
Confidence 47999999999999999999999999999999966444311 222222222678999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
|++|.+......+..+ ..+.+++++++++.++
T Consensus 80 di~vtaTG~~~vi~~e----~~~~mkdgail~n~Gh 111 (162)
T PF00670_consen 80 DIFVTATGNKDVITGE----HFRQMKDGAILANAGH 111 (162)
T ss_dssp SEEEE-SSSSSSB-HH----HHHHS-TTEEEEESSS
T ss_pred CEEEECCCCccccCHH----HHHHhcCCeEEeccCc
Confidence 9999887654433333 3446789999876554
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0003 Score=65.66 Aligned_cols=137 Identities=19% Similarity=0.177 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++.++..++...|..++.++..+-|.+.=. |.|+|+.. ...++ +.|...+.||...+-
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~----------------g~aIy-d~m~~~~~~V~t~~~ 91 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYD----------------GLGIF-DTMQHVKPDVHTVCV 91 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhh----------------HHHHH-HHHHhcCCCEEEEEE
Confidence 4889999999999999886543344444211 22333221 12455 678889999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l~l 164 (539)
|.|.+.|.-|++++|- |++.++++|.+-...-|. .|.+. .+...-| .....+++-
T Consensus 92 G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~ 168 (196)
T PRK12551 92 GLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGA---RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTD 168 (196)
T ss_pred EEehhHHHHHHhCCCCCceecCCCCEEEEecCCccc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhh
Confidence 9999999999999985 889999998776553222 12110 1122223 234456666
Q ss_pred cCCCCCHHHHHHcCCcceecCcc
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
....++|+||+++||||+|++..
T Consensus 169 rd~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 169 RDFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred cCcCCCHHHHHHcCCCcEEeccC
Confidence 77889999999999999998653
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00033 Score=66.06 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=36.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|+|+|+|.||..+|+.|.+.|++|+++|+++++++...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 4799999999999999999999999999999988766653
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=73.25 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=68.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEE--eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLK--EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK- 377 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~--d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~- 377 (539)
-||+|||+ |.+|.++|..++..|. .++++ |++++.++...-++......+. ..++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~--------------~~v~i 110 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLL--------------REVSI 110 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhc--------------CceEE
Confidence 48999999 9999999999998875 24445 8888887665444433221111 1233
Q ss_pred ccCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 378 GVLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 378 ~~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+.+++++++||+||.+... +..+.+++...|.++.+++++++..+..
T Consensus 111 ~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 111 GIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred ecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 23456899999999987621 2344556666788877778876655533
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=6.4e-05 Score=78.76 Aligned_cols=100 Identities=16% Similarity=0.184 Sum_probs=71.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+...|.+|..||+.+.... .......++ +.++.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------~~~~~~~~l~ell~~ 203 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------GNARQVGSLEELLAQ 203 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc----------------------------CCceecCCHHHHHhh
Confidence 5899999999999999999999999999998642100 011122344 66799
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+..+|-..+.+.-+=++....++++++++..+-+-. ...+...+.
T Consensus 204 sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 204 SDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALK 254 (409)
T ss_pred CCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH
Confidence 9999999998777555444667788999998875554433 334544443
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=74.74 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-N-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.||..++..+.. . ..+|++|+|++++.+.+.+.+.+ .+. .+....+. +++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~-------~g~-----------~~~~~~~~~~av 187 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRA-------QGF-----------DAEVVTDLEAAV 187 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------ceEEeCCHHHHH
Confidence 479999999999999986654 3 47899999999998887655321 110 12233444 578
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++||+|+.+.+.... ++. .+.++++++|...++.
T Consensus 188 ~~aDIVi~aT~s~~p----vl~--~~~l~~g~~i~~ig~~ 221 (314)
T PRK06141 188 RQADIISCATLSTEP----LVR--GEWLKPGTHLDLVGNF 221 (314)
T ss_pred hcCCEEEEeeCCCCC----Eec--HHHcCCCCEEEeeCCC
Confidence 899999988875532 221 1457888866554443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=72.50 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||.|||.|.+|..++..+...|.+|+++|+++++.+...+ .|. . .+ ...++ +.+++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~-----------~G~-~---------~~-~~~~l~~~l~~ 210 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE-----------MGL-S---------PF-HLSELAEEVGK 210 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------cCC-e---------ee-cHHHHHHHhCC
Confidence 48999999999999999999999999999999876544321 110 0 00 01122 55788
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+|+||.++|... +-++..+.++++.+|++..+.
T Consensus 211 aDiVI~t~p~~~-----i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 211 IDIIFNTIPALV-----LTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred CCEEEECCChhh-----hhHHHHHcCCCCcEEEEEccC
Confidence 999999998421 224455667788888765543
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0022 Score=69.65 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-+++++-++-..+.++.++.. .+-+|-|-=.+++++ |.+-.+.. ....+.+.+ ..+....+|+|+.|
T Consensus 221 G~~~peGyRKAlRlmkLAekf-gLPIVtLVDTpGA~p-G~~AEe~G----------q~~aIArnl-~amasl~VP~ISVV 287 (762)
T PLN03229 221 GMPTPHGYRKALRMMYYADHH-GFPIVTFIDTPGAYA-DLKSEELG----------QGEAIAHNL-RTMFGLKVPIVSIV 287 (762)
T ss_pred CCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCcCC-CchhHHHh----------HHHHHHHHH-HHHhCCCCCEEEEE
Confidence 467788888888888888765 344555532223332 33222210 112222334 45778999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
-|.|.|||......||++++.+++.|+. +-|.++.+..+... .+|.+ ....-.++|++.+++|+||.|+|
T Consensus 288 iGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsILwkd~---~~A~e-AAe~lkiTa~dL~~lGiiD~IIp 357 (762)
T PLN03229 288 IGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAILWKSA---KAAPK-AAEKLRITAQELCRLQIADGIIP 357 (762)
T ss_pred eCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHHHhcCc---ccHHH-HHHHcCCCHHHHHhCCCCeeecc
Confidence 9999988887777899999999987653 22444433333222 22322 34556899999999999999997
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
.
T Consensus 358 E 358 (762)
T PLN03229 358 E 358 (762)
T ss_pred C
Confidence 4
|
|
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00043 Score=64.78 Aligned_cols=136 Identities=19% Similarity=0.273 Sum_probs=94.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEE--EEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAI--VLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~v--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ia 103 (539)
-.++.++-..+...|-.++.++.-+-| -|.+.| +|+. ....++ +.|...+-||..
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~----------------~GlaIy-d~m~~~~~~V~T 90 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVY----------------AGLAIY-DTMRYIKAPVST 90 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchh----------------hHHHHH-HHHHhcCCCEEE
Confidence 357888888888888888764332222 223333 3321 123455 678899999999
Q ss_pred EEcCccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchh-h-----------------ccccccC--HHHHHH
Q 009256 104 AVEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLVG--LSKAIE 161 (539)
Q Consensus 104 av~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~r~vG--~~~a~~ 161 (539)
.+-|.|.+.|.-|++++|- |++.+++++-+-...-|. .|.. . .+.+.-| ...-.+
T Consensus 91 i~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~---~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~ 167 (201)
T PRK14513 91 ICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF---RGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLR 167 (201)
T ss_pred EEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999996 999999998876655443 2211 1 1122223 344456
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
++-....++|+||+++||||+|+++.
T Consensus 168 ~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 168 DMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HhccCcccCHHHHHHcCCCcEEeccC
Confidence 66677889999999999999998653
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00018 Score=70.97 Aligned_cols=78 Identities=21% Similarity=0.199 Sum_probs=53.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN--NIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~--G~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|||+|.||..++..+.+. +++ +.++|+++++.+.+.+.. .....+++ +.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~-----------------------~~~~~~~~~el 58 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT-----------------------GAKACLSIDEL 58 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc-----------------------CCeeECCHHHH
Confidence 4899999999999999999876 455 557899998766553210 11223444 44
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEK 411 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~ 411 (539)
+.++|+|++|.|. ....++..++.+
T Consensus 59 l~~~DvVvi~a~~--~~~~~~~~~al~ 83 (265)
T PRK13304 59 VEDVDLVVECASV--NAVEEVVPKSLE 83 (265)
T ss_pred hcCCCEEEEcCCh--HHHHHHHHHHHH
Confidence 5889999999974 333455554443
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.8e-05 Score=75.94 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=66.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
.||+|||+ |.+|.++|..++..|. +++++|++++. ++....++.+....... . -.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~-~-----------~~i~- 69 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLA-E-----------IVIT- 69 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccC-c-----------eEEe-
Confidence 48999999 9999999999998886 89999996533 33222222111000000 0 1232
Q ss_pred cCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 379 VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 379 ~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+.+++++++||+||.+... +..+.+++..+|.++.+++.+++..+..
T Consensus 70 ~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNP 130 (322)
T cd01338 70 DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNP 130 (322)
T ss_pred cCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCc
Confidence 4556899999999987621 2345566667788888656666544433
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=74.31 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=68.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
-||+|||+ |.+|+++|..+...|. +++++|+++ +.++.....+.+....... + -.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~-~-----------~~i~- 70 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLA-G-----------VVAT- 70 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccC-C-----------cEEe-
Confidence 38999998 9999999999998885 899999975 3333332222211100000 0 0122
Q ss_pred cCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 379 VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 379 ~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
..+++++++||+||.+... +..+.+++..++.++.+++.+++..+...
T Consensus 71 ~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 71 TDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 3556899999999987621 34456666777888887677666555433
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=73.71 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=63.8
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-c-CC--c
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-V-LD--Y 382 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~-~~--~ 382 (539)
||+|||+ |.+|+++|..++..|+ +++++|+++ . +...-++. .... ...+.. + ++ +
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a-~g~a~DL~--------~~~~--------~~~i~~~~~~~~~~ 62 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-A-AGVAADLS--------HIPT--------AASVKGFSGEEGLE 62 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-C-cEEEchhh--------cCCc--------CceEEEecCCCchH
Confidence 6999999 9999999999998886 899999987 1 11101111 1100 012332 2 22 5
Q ss_pred cCCCCcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 383 SEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 383 ~~~~~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
+++++||+||.+.. .+..+.+++.+.+.++. |+++++..|....
T Consensus 63 ~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~-p~~iiivvsNPvD 120 (312)
T TIGR01772 63 NALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESC-PKAMILVITNPVN 120 (312)
T ss_pred HHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhC-CCeEEEEecCchh
Confidence 89999999998762 24455666667777775 5555554454443
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0022 Score=64.23 Aligned_cols=188 Identities=13% Similarity=0.064 Sum_probs=104.3
Q ss_pred CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHh-cCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccC
Q 009256 319 MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-RGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIE 397 (539)
Q Consensus 319 mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe 397 (539)
||+.+|..|+++|++|++|+|+ +..+...+. .+ .... .+.. ....+..+++.+.+..+|+||.+++.
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~---Gl-~i~~~~~~~-------~~~~~~~~~~~~~~~~~D~iiv~vKs 69 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQE---GL-RIVSLGGEF-------QFRPVSAATSPEELPPADLVIITVKA 69 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHC---Cc-EEEecCCcE-------EEcccccccChhhcCCCCEEEEeccc
Confidence 7999999999999999999997 444443221 00 0000 0100 00022334455557789999999974
Q ss_pred ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH-HhhccCCCCcEEEe-ccCCCCCCCCe---------eeeecCCCCcH
Q 009256 398 SVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEKTSSQDRIIGA-HFFSPAHVMPL---------LEIVRTERTSA 466 (539)
Q Consensus 398 ~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~-i~~~~~~~~r~vg~-h~~~p~~~~~~---------vei~~~~~t~~ 466 (539)
. ....+++.+.+++.++++|++...++...+ +...++. .++++. -++..-...+. +.+-..+. +.
T Consensus 70 ~--~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~-~~ 145 (293)
T TIGR00745 70 Y--QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVG-EN 145 (293)
T ss_pred h--hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCC-ch
Confidence 4 356778889999999888888777776543 4444432 233322 11111011111 11111111 22
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcc------------------------cchh-----hcchHHHHHHHHHHHHc-CC--C
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCT------------------------GFAV-----NRAFFPYSQSARLLVSL-GV--D 514 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~------------------------g~v~-----nrl~~~~~~Ea~~l~~~-G~--~ 514 (539)
+..+.+..++...|.......|.. |.+. -+++..++.|...+++. |+ +
T Consensus 146 ~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~ 225 (293)
T TIGR00745 146 EAVEALAELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLP 225 (293)
T ss_pred HHHHHHHHHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 455667777777665554444421 1111 13344667799888876 86 5
Q ss_pred HHHHHHHH
Q 009256 515 VFRIDSAI 522 (539)
Q Consensus 515 ~~~id~a~ 522 (539)
.+.+++.+
T Consensus 226 ~~~~~~~~ 233 (293)
T TIGR00745 226 DDEVEELV 233 (293)
T ss_pred HHHHHHHH
Confidence 55566655
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00022 Score=73.72 Aligned_cols=147 Identities=12% Similarity=0.084 Sum_probs=91.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEE------EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVV------LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~------~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
++|+|||.|.+|...|..+...|++|+ ++|.+....+.+.+ +.+.+.+..
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~------------------------dGF~v~~~~ 92 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE------------------------NGFKVGTYE 92 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh------------------------cCCccCCHH
Confidence 589999999999999999999999999 44444444333321 122332222
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC----------CC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA----------HV 452 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~----------~~ 452 (539)
++++.||+|+..+|+. . ...+++++.++++++..+.- +-+..+.......+....++-+-|-.|- .-
T Consensus 93 Ea~~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~G 169 (487)
T PRK05225 93 ELIPQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFG 169 (487)
T ss_pred HHHHhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCC
Confidence 7789999999999977 3 66777899999999998763 3333333211111222233333332221 11
Q ss_pred CCeeeeec-CCCCcHHHHHHHHHHHHHcCce
Q 009256 453 MPLLEIVR-TERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 453 ~~~vei~~-~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
.|.+..+- -...+-.+.+.+..+...+|..
T Consensus 170 vp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 170 VPTLIAVHPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred ceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence 12222222 1345667889999999999876
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=72.51 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=63.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-C-C--
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-L-D-- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~-~-- 381 (539)
+||+|||+ |.+|+++|..++..|+ +++++|++ .++...-.+.+ ... ...+... . +
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~--------~~~--------~~~i~~~~~~~~~ 62 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSH--------INT--------PAKVTGYLGPEEL 62 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHh--------CCC--------cceEEEecCCCch
Confidence 38999999 9999999999998885 89999998 22221111111 100 0134422 2 2
Q ss_pred ccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 382 ~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
++++++||+||.+... +..+.+++.+.+.++. |+++++..+...
T Consensus 63 y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~-p~a~vivvtNPv 120 (310)
T cd01337 63 KKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKAC-PKALILIISNPV 120 (310)
T ss_pred HHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCch
Confidence 5899999999988621 3445556666777775 466665444443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0023 Score=63.16 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=102.6
Q ss_pred cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-..|.-|++. .-+++....+.+..+++.+... .+-+|.|+..|++ -+.|-. .....+.... ..
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSgGa-----RmqEg~-----~sL~~~ak~~-~~ 185 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASGGA-----RMQEAL-----LSLMQMAKTS-AA 185 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCCCc-----ccccch-----hHHHhHHHHH-HH
Confidence 3433344445554 4799999999999999988755 5667777654432 121100 0011111111 12
Q ss_pred HHHHHHhCCCcEEEEEcCccccchh-HhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~ 168 (539)
+ .++.....|.|+.+.|+|+||+. ..++.+|+++|.++|.+++...++ +...+|. -+.-+.
T Consensus 186 ~-~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGprV-----------ie~ti~e------~lpe~~ 247 (285)
T TIGR00515 186 L-AKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPRV-----------IEQTVRE------KLPEGF 247 (285)
T ss_pred H-HHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHHH-----------HHHHhcC------ccchhc
Confidence 2 34667789999999999999975 466799999999999888743221 1111110 011112
Q ss_pred CCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 169 ITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 169 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
-+|+-+.+.|+||.|+++.++.+...++...+...
T Consensus 248 q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~~ 282 (285)
T TIGR00515 248 QTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQNL 282 (285)
T ss_pred CCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhhC
Confidence 25666888999999999999998888887765443
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00012 Score=73.93 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=62.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc---ccCC-
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK---GVLD- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~- 381 (539)
.||+|||+ |.+|+.+|..++..++ +++++|+++ .+...-.+.+. .. .-.+. ..++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~----~~------------~~~i~~~~~~~d~ 80 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHI----NT------------PAQVRGFLGDDQL 80 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhC----Cc------------CceEEEEeCCCCH
Confidence 49999999 9999999999997776 899999987 11100011000 00 00122 2223
Q ss_pred ccCCCCcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 382 YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 382 ~~~~~~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
++++++||+||.+.- .+....+++.+.+.++.+ +.+++..|...
T Consensus 81 ~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p-~aivivvSNPv 138 (323)
T PLN00106 81 GDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP-NALVNIISNPV 138 (323)
T ss_pred HHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEeCCCc
Confidence 378999999998762 244455666667777774 45554444444
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=6.1e-05 Score=77.50 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.||+.+|..+...|.+|.+||+.... .. .... ..++ +.++.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~~--------------------------~~~~-~~~L~ell~~ 167 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--RG--------------------------DEGD-FRSLDELVQE 167 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--cc--------------------------cccc-cCCHHHHHhh
Confidence 48999999999999999999999999999964321 00 0001 1234 55789
Q ss_pred cCEEEEcccCChh---HHHHHH-HHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVP---LKQKIF-SELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~---~~~~~~-~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+..+|-..+ -...++ ++....++++++++..+-+-.+ ..+...+
T Consensus 168 sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL 221 (378)
T PRK15438 168 ADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCL 221 (378)
T ss_pred CCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHH
Confidence 9999999985443 112233 4566778999998855544333 3444444
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=73.90 Aligned_cols=102 Identities=12% Similarity=0.079 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|||||.|.+|..+|+.+. ..|.+|..||+....... . .. ..... ++ +.++
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~--~----------~~-------------~~~~~-~l~ell~ 199 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE--E----------RF-------------NARYC-DLDTLLQ 199 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH--H----------hc-------------CcEec-CHHHHHH
Confidence 58999999999999999987 678899999987421110 0 00 11112 34 5679
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~ 436 (539)
.||+|+.++|-..+.+.-+=++....++++++++..+-+ +.-..+...+.
T Consensus 200 ~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~ 251 (323)
T PRK15409 200 ESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ 251 (323)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999988876555546677889999988754434 33345555554
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=70.57 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=50.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
..+|||||+|.||..++..+.+. +++|. ++|+++++.+...+.. +.....+++ +
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~----------------------g~~~~~~~~ee 63 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL----------------------RRPPPVVPLDQ 63 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc----------------------CCCcccCCHHH
Confidence 46899999999999999999873 78876 8899988766543211 111223344 4
Q ss_pred CCCCcCEEEEcccCCh
Q 009256 384 EFKDVDMVIEAVIESV 399 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~ 399 (539)
.+.++|+|++|.|.+.
T Consensus 64 ll~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 64 LATHADIVVEAAPASV 79 (271)
T ss_pred HhcCCCEEEECCCcHH
Confidence 4578999999999654
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=64.59 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=53.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|-+|.+++..|...|.+ |++++|+.++++.+.+.+ ....+ .....++. +.+.
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~--------~~~~~----------~~~~~~~~~~~~~ 74 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF--------GGVNI----------EAIPLEDLEEALQ 74 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH--------TGCSE----------EEEEGGGHCHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc--------Ccccc----------ceeeHHHHHHHHh
Confidence 5899999999999999999999986 999999999988775542 00000 01112233 4567
Q ss_pred CcCEEEEcccCChh
Q 009256 387 DVDMVIEAVIESVP 400 (539)
Q Consensus 387 ~aDlVi~avpe~~~ 400 (539)
++|+||.|+|....
T Consensus 75 ~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 75 EADIVINATPSGMP 88 (135)
T ss_dssp TESEEEE-SSTTST
T ss_pred hCCeEEEecCCCCc
Confidence 89999999986543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=72.49 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=72.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+++||||.|.+|..+|+.+...|.+|..||+++. -+.. +. ....+.+ + +.++.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~-~~-----------------------~~~~y~~-l~ell~~ 200 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAE-KE-----------------------LGARYVD-LDELLAE 200 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHH-hh-----------------------cCceecc-HHHHHHh
Confidence 5899999999999999999977889999999874 1111 00 1123333 4 67899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+..+|-..+...-+=++..+.++++.+++..+-+-. ...+...+.
T Consensus 201 sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~ 251 (324)
T COG1052 201 SDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK 251 (324)
T ss_pred CCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998887665555677888999998874443433 334444443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00018 Score=71.47 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
++|+||| .|.||.+||..|.++|++|++|+ ++++. + +.++
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l-~-------------------------------------e~~~ 200 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL-P-------------------------------------AVCR 200 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH-H-------------------------------------HHHh
Confidence 5899999 99999999999999999999995 66421 1 3357
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.||+||.|++....+... ++++++++++.+..
T Consensus 201 ~ADIVIsavg~~~~v~~~-------~lk~GavVIDvGin 232 (296)
T PRK14188 201 RADILVAAVGRPEMVKGD-------WIKPGATVIDVGIN 232 (296)
T ss_pred cCCEEEEecCChhhcchh-------eecCCCEEEEcCCc
Confidence 899999999865433322 27899988876543
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00026 Score=71.61 Aligned_cols=92 Identities=20% Similarity=0.167 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..+...| .+|+++|+++++.+.+.+.+.. ...+ .++. +.+.
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--------~~~~-------------~~~~~~~l~ 237 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--------NAVP-------------LDELLELLN 237 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--------eEEe-------------HHHHHHHHh
Confidence 48999999999999999998866 6899999999887665443210 0000 1122 4567
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhC-CCCeEEEecC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKAC-PPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~-~~~~ii~s~t 423 (539)
++|+||.|++.+.. ...+..+.... ..+.++++.+
T Consensus 238 ~aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeC
Confidence 89999999986554 33334333222 2455666554
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00016 Score=73.15 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=70.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+...|.+|+.||+.... .. . .. ..++ +.++.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~------------~---------------~~-~~~l~ell~~ 197 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC------------R---------------EG-YTPFEEVLKQ 197 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc------------c---------------cc-cCCHHHHHHh
Confidence 58999999999999999998889999999975321 00 0 00 1133 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~ 436 (539)
||+|+.++|-..+...-+=++....++++++++..+-+ +....+...+.
T Consensus 198 sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 198 ADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred CCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 99999999977775544446677889999988755544 33345555554
|
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=71.41 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=72.7
Q ss_pred cCcEEEEEeCC-C--C---CCCCC----------HHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC
Q 009256 12 NDGVAIITLIN-P--P---VNALA----------IPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (539)
Q Consensus 12 ~~~v~~i~l~~-p--~---~Nal~----------~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~ 75 (539)
++.+..|-++. + + .+.+. ...+.++.++++.+..|+.|++|||.-.+ +.|.++..+
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----- 112 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----- 112 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH-----
Confidence 56788888873 3 1 23221 23578999999999999999999998642 113322211
Q ss_pred CCcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeC
Q 009256 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL 133 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~ 133 (539)
+...+.+ +.+....|||||..++++ -+|+.|+.+||-+++.+...+++
T Consensus 113 --------~ei~~ai-~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G~v~~ 160 (584)
T TIGR00705 113 --------VEIGSAL-SEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMGSVDL 160 (584)
T ss_pred --------HHHHHHH-HHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCceEEe
Confidence 1122333 346678899999888775 78899999999999999887755
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0003 Score=71.59 Aligned_cols=95 Identities=9% Similarity=-0.012 Sum_probs=65.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.||...+..+.. ...+|.+||+++++.+...+++.+ .+ -.+...++. +++
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~-------~g-----------~~v~~~~~~~eav 190 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD-------YE-----------VPVRAATDPREAV 190 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------hC-----------CcEEEeCCHHHHh
Confidence 579999999999997766654 356999999999998877654421 11 012334455 778
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
++||+|+.|+|....+.. .+.+++++.|....+..+
T Consensus 191 ~~aDiVitaT~s~~P~~~------~~~l~~g~~v~~vGs~~p 226 (325)
T TIGR02371 191 EGCDILVTTTPSRKPVVK------ADWVSEGTHINAIGADAP 226 (325)
T ss_pred ccCCEEEEecCCCCcEec------HHHcCCCCEEEecCCCCc
Confidence 999999999986543321 235689988776655433
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00015 Score=73.57 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=70.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|+.+...|.+|..||+.... .. .. ..++ +.++.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~~-----------------------------~~-~~~l~ell~~ 197 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-AR-----------------------------PD-RLPLDELLPQ 197 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-cc-----------------------------cc-ccCHHHHHHh
Confidence 58999999999999999999899999999986321 00 00 0123 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+-. -..+...+.
T Consensus 198 sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~ 248 (317)
T PRK06487 198 VDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR 248 (317)
T ss_pred CCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH
Confidence 9999999998777655555667788999998875554433 345555444
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00013 Score=74.03 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=63.3
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG- 378 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~- 378 (539)
||+|||+ |.+|..++..|+..|+ +++++|+++ +.++.....+.+..... ....+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~--------------~~~~~i~ 67 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPL--------------LKGVVIT 67 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccc--------------cCCcEEe
Confidence 7999999 9999999999998664 599999987 44332211111110000 011112
Q ss_pred cCCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 379 VLDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 379 ~~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
..+++++++||+||.+... +..+.+++..+|.++.+++.+++..+.
T Consensus 68 ~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 68 TDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred cChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 3445889999999977521 344566666778888655665554443
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0007 Score=62.60 Aligned_cols=98 Identities=21% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEE--EeeCCceEeCCcccCCCCCCcchhh-----------------
Q 009256 88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR--IAAPKTQLGLPELTLGVIPGFGGTQ----------------- 148 (539)
Q Consensus 88 ~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~--ia~~~a~f~~pe~~~Gl~p~~g~~~----------------- 148 (539)
.++ +.+...+.||...+-|.|...|.-|++++|-. ++.+++++-.-... |.+-|.. +-
T Consensus 76 AIy-dtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~G~a-~Di~i~A~ei~~~~~~l~~ 152 (200)
T COG0740 76 AIY-DTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQGQA-SDIEIHAREILKIKERLNR 152 (200)
T ss_pred HHH-HHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCccCH-HHHHHHHHHHHHHHHHHHH
Confidence 455 67899999999999999999999999999885 77777777654333 2211110 10
Q ss_pred ccccccCHHH--HHHHHHcCCCCCHHHHHHcCCcceecCcch
Q 009256 149 RLPRLVGLSK--AIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188 (539)
Q Consensus 149 ~l~r~vG~~~--a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (539)
.+...-|... -.+.+-....++|+||+++||||+|....+
T Consensus 153 i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 153 IYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 1111122222 223333567889999999999999986543
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=9.4e-05 Score=83.10 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=44.7
Q ss_pred cchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 491 GFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 491 g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
..++||++.++++|+..++++|+ +|+|||.++ .++|||+ |||+++|.++
T Consensus 625 ~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~G 679 (715)
T PRK11730 625 EEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLG 679 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhC
Confidence 45889999999999999999994 999999999 7999986 9999999764
|
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0035 Score=60.30 Aligned_cols=160 Identities=16% Similarity=0.152 Sum_probs=93.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH---Hh
Q 009256 21 INPPVNALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI---ED 96 (539)
Q Consensus 21 ~~p~~Nal~~~~~~~l~~~~~~~-~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~ 96 (539)
|+|.. .++.+-...+...+..+ +.+..+-+|.|-=. +.|-.|..-++.. .......++ ..+ .+
T Consensus 39 ~~~~~-~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG~~~g~~aE~~G----------~~~a~A~l~-~a~a~a~~ 105 (238)
T TIGR03134 39 VVPDA-EVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PSQAYGRREELLG----------INQALAHLA-KALALARL 105 (238)
T ss_pred ECCCC-cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CCCCCCHHHHHHH----------HHHHHHHHH-HHHHHhhc
Confidence 44433 57777777777777774 55566666666433 2344443322211 111122222 334 45
Q ss_pred CCCcEEEEEcCccccchh-HhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcC--CCCCHHH
Q 009256 97 CKKPIVAAVEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS--KSITSEE 173 (539)
Q Consensus 97 ~~~p~iaav~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g--~~~~a~e 173 (539)
.+.|+|+.|-|.++|||+ .+.+.+|.++|-+++.++ .++.-+.+..+-+-. ..+.++.-+- ...+.+.
T Consensus 106 ~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~-------vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 106 AGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVH-------VMDLESMARVTKRSV--EELEALAKSSPVFAPGIEN 176 (238)
T ss_pred CCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEE-------ecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHH
Confidence 669999999999998886 455558888888777654 555555544444433 3344443332 2457788
Q ss_pred HHHcCCcceecCcchHHHHHHHHHHHHHh
Q 009256 174 GWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (539)
Q Consensus 174 A~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (539)
+.++|+||+|+++.+-..-+.+++.-++.
T Consensus 177 ~~~~G~vd~vi~~~~~~~~~~~~~~~~~~ 205 (238)
T TIGR03134 177 FVKLGGVHALLDVADADAPAAQLAAVLAA 205 (238)
T ss_pred HHhCCCccEEeCCCCcccHHHHHHHHHHh
Confidence 99999999999866543233444444443
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00025 Score=73.56 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=72.6
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|||||.|.+|..+|..+. ..|.+|..||+.+.. .+...+.... .....+... .......++ +.+
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~---~l~~~~~~~--------~~~~~~~~L~ell 234 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQ---FLKANGEQP--------VTWKRASSMEEVL 234 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcc---ccccccccc--------ccccccCCHHHHH
Confidence 58999999999999999985 679999999987642 1111000000 000000000 011122355 667
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
+.||+|+.++|-..+...-+=++..+.++++++++..+-+-. -..+...+.
T Consensus 235 ~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~ 287 (386)
T PLN02306 235 READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLK 287 (386)
T ss_pred hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 999999999997776655555667788999999875544433 334545443
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0011 Score=61.05 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=47.9
Q ss_pred eEEEEcCCCCcHHHH-HHHHHC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 310 KVAVIGGGLMGSGIA-TAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 310 kI~iIG~G~mG~~iA-~~l~~~-----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
||+|||+|..-.+.- ...... +-+++++|+|+++++....-.+.. .+....+ -++..++|.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~----~~~~~~~--------~~v~~ttd~~ 68 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRM----VEEAGAD--------LKVEATTDRR 68 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHH----HHHCTTS--------SEEEEESSHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHH----HHhcCCC--------eEEEEeCCHH
Confidence 799999999876643 223322 348999999999988664433222 2222111 346678888
Q ss_pred cCCCCcCEEEEcc
Q 009256 383 SEFKDVDMVIEAV 395 (539)
Q Consensus 383 ~~~~~aDlVi~av 395 (539)
+++++||+||.++
T Consensus 69 eAl~gADfVi~~i 81 (183)
T PF02056_consen 69 EALEGADFVINQI 81 (183)
T ss_dssp HHHTTESEEEE--
T ss_pred HHhCCCCEEEEEe
Confidence 8899999999876
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00032 Score=69.00 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=54.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||. |.||.+||..|.++|++|++|..... ++ +.++
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--------------------------------------~l~~~~~ 200 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--------------------------------------NLAEVAR 200 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--------------------------------------CHHHHHh
Confidence 58999999 99999999999999999999932211 11 3468
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+||+||.+++....+... .+++++++++.+..
T Consensus 201 ~ADIVI~avg~~~~v~~~-------~ik~GavVIDvgin 232 (284)
T PRK14179 201 KADILVVAIGRGHFVTKE-------FVKEGAVVIDVGMN 232 (284)
T ss_pred hCCEEEEecCccccCCHH-------HccCCcEEEEecce
Confidence 899999999855544332 37899998876543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00057 Score=71.16 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|+|+|.|.+|..++..+...|.+|+++|+++.+++.+.. .|. ......+.++++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----------~G~-------------~~~~~~e~v~~a 258 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----------EGY-------------EVMTMEEAVKEG 258 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----------cCC-------------EEccHHHHHcCC
Confidence 48999999999999999999999999999999988766532 121 101111456789
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
|+||++...... +-......++++.+++...
T Consensus 259 DVVI~atG~~~~----i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGNKDI----ITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCCHHH----HHHHHHhcCCCCcEEEEeC
Confidence 999999863222 2223456788888776444
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0004 Score=70.14 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.6
Q ss_pred CCcceEEEEcC-CCCcHHHHHHHHHCC--CeEEEEeCC
Q 009256 306 RGVRKVAVIGG-GLMGSGIATAHILNN--IYVVLKEVN 340 (539)
Q Consensus 306 ~~~~kI~iIG~-G~mG~~iA~~l~~~G--~~V~~~d~~ 340 (539)
.+|+||+|||+ |.+|+.+|..++..+ .+++++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 45779999999 999999999998665 589999993
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=57.51 Aligned_cols=139 Identities=15% Similarity=0.221 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcC----CCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCc
Q 009256 25 VNALAIPIVAGLKDKFEEATSR----DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d----~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 100 (539)
.-+++...-+.+..+++.+.+| ..+-+|.|.-.| |+.+.|-.. . ...+.+.+.... .+... .|
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSg-----GaRlqEg~~----~-L~~~a~i~~~~~--~ls~~-vP 138 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTG-----GVRLQEANA----G-LIAIAEIMRAIL--DARAA-VP 138 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCC-----CcChhhhHH----H-HHHHHHHHHHHH--HHhCC-CC
Confidence 3678888888999999888752 123456664333 233332110 0 001111121221 24444 99
Q ss_pred EEEEEcCc--cccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH--HHHHHHHHcCCCCCHHHHHH
Q 009256 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL--SKAIEMMLLSKSITSEEGWK 176 (539)
Q Consensus 101 ~iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~--~~a~~l~l~g~~~~a~eA~~ 176 (539)
+|+.+.|+ |+||+..++..||++|+++++++++.-.. ......|. --..+--|.-+.+.++....
T Consensus 139 ~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~aGP~-----------VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~ 207 (274)
T TIGR03133 139 VIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLSGPE-----------VIEQEAGVEEFDSRDRALVWRTTGGKHRFL 207 (274)
T ss_pred EEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEeccCHH-----------HHHHhcCCCccCHHHhcccccccchHhHhh
Confidence 99999999 89999999999999999999888763111 01111121 11112222223455556777
Q ss_pred cCCcceecCcc
Q 009256 177 LGLIDAVVTSE 187 (539)
Q Consensus 177 ~Glv~~vv~~~ 187 (539)
.|++|.++++|
T Consensus 208 sG~~D~~v~dd 218 (274)
T TIGR03133 208 SGDADVLVEDD 218 (274)
T ss_pred cccceEEeCCH
Confidence 99999999875
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00026 Score=71.05 Aligned_cols=97 Identities=27% Similarity=0.325 Sum_probs=63.4
Q ss_pred EEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 313 VIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 313 iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|||+|.+|.++|..++..+. ++.++|++++.++....++++..... ... -.++ ..+++++++||+
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~-~~~-----------~~i~-~~~~~~~~daDi 67 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFL-PTP-----------KKIR-SGDYSDCKDADL 67 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhccc-CCC-----------eEEe-cCCHHHHCCCCE
Confidence 69999999999999998886 89999999887665544443221100 000 1233 355689999999
Q ss_pred EEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 391 VIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 391 Vi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
||.+... +..+.+++..++.++. ++.+++..+
T Consensus 68 vVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~-p~~~vivvs 113 (299)
T TIGR01771 68 VVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSG-FDGIFLVAT 113 (299)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEeC
Confidence 9987632 3334555666677775 445444333
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00013 Score=81.82 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=44.9
Q ss_pred cchhhcchHHHHHHHHHHHHcC-C-CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 491 GFAVNRAFFPYSQSARLLVSLG-V-DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 491 g~v~nrl~~~~~~Ea~~l~~~G-~-~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
.-++||++.+++||+.+++++| + +++|||.++ .++|||. |||+++|..+
T Consensus 625 ~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~G 679 (714)
T TIGR02437 625 EEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIG 679 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhC
Confidence 3489999999999999999999 4 999999999 8999997 9999999753
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00082 Score=64.19 Aligned_cols=106 Identities=25% Similarity=0.340 Sum_probs=70.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
..||.|||.|..|.+.|..++.+|. ++.++|.++++++...=.+++... --...++....|+...
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~-------------f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSA-------------FLSTPNVVASKDYSVS 86 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccc-------------cccCCceEecCccccc
Confidence 5799999999999999999999886 999999999877654322221110 0111456667788889
Q ss_pred CCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
+++++||..... +.++.+.++.++.++ .|+++++..+....
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~y-Spd~~llvvSNPVD 141 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKY-SPDCILLVVSNPVD 141 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCchH
Confidence 999999988732 233344444455555 45665544443333
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00026 Score=71.82 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=62.7
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (539)
||+|||+ |.+|..++..+...|+ +++++|++++. ++....++.+... .....+..+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~--------------~~~~~~~~~ 66 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAF--------------PLLDGVVPT 66 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccc--------------hhcCceecc
Confidence 5899999 9999999999998654 59999997543 2211111110000 001123333
Q ss_pred -CCccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 380 -LDYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 380 -~~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
.+++++++||+||.+... +..+.+++..+|.++.+++++++..+...
T Consensus 67 ~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv 128 (324)
T TIGR01758 67 HDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA 128 (324)
T ss_pred CChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 336899999999987621 22334555666777765666665545333
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0016 Score=63.42 Aligned_cols=145 Identities=17% Similarity=0.138 Sum_probs=89.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||.|.-|.+-|.+|..+|++|++--|.... .+++. + +.+.+.+-.++++.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~-----------~-------------dGf~V~~v~ea~k~ 74 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAK-----------E-------------DGFKVYTVEEAAKR 74 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHH-----------h-------------cCCEeecHHHHhhc
Confidence 58999999999999999999999998876554333 33332 2 23443333388999
Q ss_pred cCEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCC----------CCCee
Q 009256 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH----------VMPLL 456 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~----------~~~~v 456 (539)
+|+|+.-+|+.. -.++++ +|.+.++.+..+. -+.+..+.--.-..+....++-.-|-.|-+ -.|.+
T Consensus 75 ADvim~L~PDe~--q~~vy~~~I~p~Lk~G~aL~-FaHGfNihf~~i~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~L 151 (338)
T COG0059 75 ADVVMILLPDEQ--QKEVYEKEIAPNLKEGAALG-FAHGFNIHFGLIVPPKDVDVIMVAPKGPGHLVRREYKEGFGVPAL 151 (338)
T ss_pred CCEEEEeCchhh--HHHHHHHHhhhhhcCCceEE-eccccceecceecCCccCcEEEEcCCCCcHHHHHHHHccCCceeE
Confidence 999999999544 457776 7999999998765 344444432111111111222222222211 11222
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCc
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKK 481 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~ 481 (539)
..+- ...+-.+.+.+..+.+.+|.
T Consensus 152 iAV~-qD~sG~a~~~Ala~AkgiGg 175 (338)
T COG0059 152 IAVH-QDASGKALDIALAYAKGIGG 175 (338)
T ss_pred EEEE-eCCCchHHHHHHHHHHhcCC
Confidence 2222 33456688889999999884
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00059 Score=70.84 Aligned_cols=87 Identities=23% Similarity=0.198 Sum_probs=60.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| ....+..+.++++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-----------~G-------------~~v~~leeal~~a 251 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-----------DG-------------FRVMTMEEAAKIG 251 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-----------cC-------------CEeCCHHHHHhcC
Confidence 48999999999999999999999999999999876443311 12 1111111456789
Q ss_pred CEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCC
Q 009256 389 DMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 424 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts 424 (539)
|+||++... ..++. +....++++.+++..+.
T Consensus 252 DVVItaTG~-----~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 252 DIFITATGN-----KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred CEEEECCCC-----HHHHHHHHHhcCCCCcEEEEECC
Confidence 999998753 23333 35667889988875443
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0026 Score=55.31 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=65.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|.+||+| -|..+|..|.+.|++|+.+|+|++.++.+.+.. ...+... + +..+.+--+++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~----~~~v~dD-------------l-f~p~~~~y~~a 78 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG----LNAFVDD-------------L-FNPNLEIYKNA 78 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC----CeEEECc-------------C-CCCCHHHHhcC
Confidence 479999999 999999999999999999999999877764421 0000000 0 12222445899
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
|+|...-| +.-.+.-+-++.+.+..+.+|..-+
T Consensus 79 ~liysirp--p~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIRP--PRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CEEEEeCC--CHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99998887 3334555667888888777765433
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00037 Score=69.08 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=37.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+...+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~ 159 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAER 159 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 479999999999999999999999999999999887766544
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00083 Score=70.18 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| .... +. +.+++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-----------~G-------------~~v~-~l~eal~~ 267 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-----------DG-------------FRVM-TMEEAAEL 267 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-----------cC-------------CEec-CHHHHHhC
Confidence 48999999999999999999999999999999876544311 11 1111 12 45678
Q ss_pred cCEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts 424 (539)
+|+||+++.. . .++. +....++++++++....
T Consensus 268 aDVVI~aTG~-~----~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 268 GDIFVTATGN-K----DVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred CCEEEECCCC-H----HHHHHHHHhcCCCCCEEEEcCC
Confidence 9999998742 1 2333 46667889988875443
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00047 Score=63.50 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC-------
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD------- 381 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------- 381 (539)
||.|||+|.+|+.++..|++.|+ +++++|.+.-....+..++. ... +-|....+.....+..+....+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~--~~~--~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY--FLS--QIGEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc--cHh--hCCChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 58999999999999999999998 69999998622222211110 000 1121112222222222221111
Q ss_pred -----c-cCCCCcCEEEEcccCChhHHHHHHHHHHHh
Q 009256 382 -----Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKA 412 (539)
Q Consensus 382 -----~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~ 412 (539)
. +.++++|+||+| .++.+.+..+.......
T Consensus 77 ~~~~~~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 77 IDENNLEGLFGDCDIVVEA-FDNAETKAMLAESLLGN 112 (174)
T ss_pred cChhhHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1 346889999999 56788777777776655
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=70.33 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcCcccc
Q 009256 32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALG 111 (539)
Q Consensus 32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~G 111 (539)
.+.++.++++.+..|+.|++|||.-.+.. |..... . +...+.+ ..+....|||||. ...+.-
T Consensus 96 ~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~------------~-~eI~~ai-~~fk~sGKpVvA~-~~~~~s 157 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPS------------M-QYIGKAL-REFRDSGKPVYAV-GDSYSQ 157 (618)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHH------------H-HHHHHHH-HHHHHhCCeEEEE-ecCccc
Confidence 45689999999999999999999864321 111110 0 1122334 4467788999985 444456
Q ss_pred chhHhhhccCEEEeeCCceEeC
Q 009256 112 GGLELAMGCHARIAAPKTQLGL 133 (539)
Q Consensus 112 gG~~lal~~D~~ia~~~a~f~~ 133 (539)
+++.||.+||-+++.+...+++
T Consensus 158 ~~YyLASaAD~I~l~P~G~v~~ 179 (618)
T PRK10949 158 GQYYLASFANKIYLSPQGVVDL 179 (618)
T ss_pred hhhhhhhhCCEEEECCCceEEE
Confidence 7999999999999999887654
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0021 Score=67.72 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=50.9
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|.. +..+...|++. +-+|+++|+++++++....- .....+....+ -++..++|.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l----~~~~~~~~g~~--------~~v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA----VKILFKENYPE--------IKFVYTTDP 68 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH----HHHHHHhhCCC--------eEEEEECCH
Confidence 48999999885 33445555543 35899999999988774322 22223322111 257778888
Q ss_pred -cCCCCcCEEEEcc
Q 009256 383 -SEFKDVDMVIEAV 395 (539)
Q Consensus 383 -~~~~~aDlVi~av 395 (539)
+++++||+||.++
T Consensus 69 ~eAl~gADfVi~~i 82 (437)
T cd05298 69 EEAFTDADFVFAQI 82 (437)
T ss_pred HHHhCCCCEEEEEe
Confidence 8999999999775
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.021 Score=56.36 Aligned_cols=141 Identities=17% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.-++....-+.+..+++.+... .+-+|.++..| |+-++|-.. ....+.+.. ..+.+....-..|.|+.
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~-rlPlV~l~~SG-----GARmQEg~~-----sL~qmak~s-aa~~~~~~~~~vP~Isv 213 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNE-SLPLIIVCASG-----GARMQEGSL-----SLMQMAKIS-SALYDYQSNKKLFYISI 213 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHc-CCCEEEEECCC-----Cccccccch-----hhhhhHHHH-HHHHHHHHcCCCCEEEE
Confidence 4789999999999999988765 35677776443 333322100 011121111 11212123567999999
Q ss_pred EcCccccchhHh-hhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC-----CCHHHHHHcC
Q 009256 105 VEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS-----ITSEEGWKLG 178 (539)
Q Consensus 105 v~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~-----~~a~eA~~~G 178 (539)
+.|+|.||+... ++.||++|+.++|.+++.-.++ ... .+|+. =+|+-.++.|
T Consensus 214 l~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPrV--------------------Ie~--t~ge~lpe~fq~ae~l~~~G 271 (296)
T CHL00174 214 LTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKRV--------------------IEQ--TLNKTVPEGSQAAEYLFDKG 271 (296)
T ss_pred EcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHHH--------------------HHH--hcCCcCCcccccHHHHHhCc
Confidence 999999999765 7779999998888877642210 000 11222 2577788999
Q ss_pred CcceecCcchHHHHHHHHHHH
Q 009256 179 LIDAVVTSEELLKVSRLWALD 199 (539)
Q Consensus 179 lv~~vv~~~~l~~~a~~~a~~ 199 (539)
+||.||+..++.+....+..-
T Consensus 272 ~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 272 LFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred CceEEEcHHHHHHHHHHHHHh
Confidence 999999999998877766543
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0042 Score=63.87 Aligned_cols=147 Identities=21% Similarity=0.256 Sum_probs=103.4
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEe-cCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLT-GNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~-g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
++.|..+.++. .+++...+.+.+.++.++++.. .++||. -+++. +.+...++.
T Consensus 25 ~~~v~vi~i~g----~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldTPGG---------------------l~~sm~~iv 78 (436)
T COG1030 25 EKKVYVIEIDG----AIDPASADYLQRALQSAEEENA-AAVVLELDTPGG---------------------LLDSMRQIV 78 (436)
T ss_pred CCeEEEEEecC----ccCHHHHHHHHHHHHHHHhCCC-cEEEEEecCCCc---------------------hHHHHHHHH
Confidence 34677777765 5999999999999999997763 344442 22211 112344666
Q ss_pred HHHHHhCCCcEEEEE---cCccccchhHhhhccCEEEeeCCceEeCCcccCCC--CCCcch--hhcc------cccc--C
Q 009256 91 VNLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGV--IPGFGG--TQRL------PRLV--G 155 (539)
Q Consensus 91 ~~~i~~~~~p~iaav---~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl--~p~~g~--~~~l------~r~v--G 155 (539)
++|.+.+.||+..| .+.|..+|..++++||+..+++.+.+|-...-.+- .+.--. ...+ .+.= -
T Consensus 79 -~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~gRN 157 (436)
T COG1030 79 -RAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERGRN 157 (436)
T ss_pred -HHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcCCC
Confidence 78999999988888 44699999999999999999999998765443221 111011 1111 1111 2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
...|.+++.....++++||++.|++|-+..
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~ 187 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIAR 187 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccC
Confidence 367788999999999999999999997763
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0025 Score=67.01 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=66.7
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.||+|||+|.- ...+...|++. +-+|+++|+++++++....-.+ ...+....+ -.+..++|.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~----~~~~~~g~~--------~~v~~ttD~ 68 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK----RYVEEVGAD--------IKFEKTMDL 68 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH----HHHHhhCCC--------eEEEEeCCH
Confidence 38999999884 44555666543 3589999999999877433222 222221111 247778888
Q ss_pred -cCCCCcCEEEEccc----------------------------------CChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 383 -SEFKDVDMVIEAVI----------------------------------ESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 383 -~~~~~aDlVi~avp----------------------------------e~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+++++||+||.++- .+..+..++.+++.+++ |+++++.-|
T Consensus 69 ~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~-P~a~lin~T 143 (425)
T cd05197 69 EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLS-PDAWYLNFT 143 (425)
T ss_pred HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence 89999999997751 13446667778888887 455554333
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0012 Score=59.82 Aligned_cols=70 Identities=23% Similarity=0.205 Sum_probs=50.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+ |..|+.|..-..++||+|+.+-||++++..... + ..++....+. +...+++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~-~-----~i~q~Difd~------------~~~a~~l~g 62 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQG-V-----TILQKDIFDL------------TSLASDLAG 62 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccccc-c-----eeecccccCh------------hhhHhhhcC
Confidence 48999996 999999999999999999999999988754210 0 0122222221 111266889
Q ss_pred cCEEEEccc
Q 009256 388 VDMVIEAVI 396 (539)
Q Consensus 388 aDlVi~avp 396 (539)
.|.||.+..
T Consensus 63 ~DaVIsA~~ 71 (211)
T COG2910 63 HDAVISAFG 71 (211)
T ss_pred CceEEEecc
Confidence 999998874
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0012 Score=66.51 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+++.. .+. .+. ..+. +++
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~-------~~~-----------~~~-~~~~~~av 186 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARA-------LGP-----------TAE-PLDGEAIP 186 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh-------cCC-----------eeE-ECCHHHHh
Confidence 479999999999999999975 56 4799999999998887665421 010 111 2334 578
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
.++|+||.|.|....+ +.. .+++++.|....+..+
T Consensus 187 ~~aDiVitaT~s~~Pl----~~~---~~~~g~hi~~iGs~~p 221 (304)
T PRK07340 187 EAVDLVVTATTSRTPV----YPE---AARAGRLVVAVGAFTP 221 (304)
T ss_pred hcCCEEEEccCCCCce----eCc---cCCCCCEEEecCCCCC
Confidence 9999999999866543 222 3578887776555433
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0026 Score=61.19 Aligned_cols=95 Identities=20% Similarity=0.207 Sum_probs=59.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c-CCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S-EFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~~~ 386 (539)
++|.|||+|.+|.++|..|.+.||+|+++|++++.+++..... +...+-.+.-+.. +-+ + -+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~---~~~~~v~gd~t~~------------~~L~~agi~ 65 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE---LDTHVVIGDATDE------------DVLEEAGID 65 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh---cceEEEEecCCCH------------HHHHhcCCC
Confidence 4799999999999999999999999999999999877743210 0000000100000 001 2 268
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEE
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA 420 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~ 420 (539)
++|.++-+..+|.. ..++..+... +....+++
T Consensus 66 ~aD~vva~t~~d~~--N~i~~~la~~~~gv~~via 98 (225)
T COG0569 66 DADAVVAATGNDEV--NSVLALLALKEFGVPRVIA 98 (225)
T ss_pred cCCEEEEeeCCCHH--HHHHHHHHHHhcCCCcEEE
Confidence 99999998876553 3444444322 44444554
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00073 Score=67.38 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=52.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|-+|.+++..|+..|. +|+++||+.++++.+.+.+..... . ..+....+. +.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~------~----------~~~~~~~~~~~~~~ 191 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFP------A----------ARATAGSDLAAALA 191 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCC------C----------eEEEeccchHhhhC
Confidence 589999999999999999999998 899999999988877654421110 0 011111222 3567
Q ss_pred CcCEEEEcccC
Q 009256 387 DVDMVIEAVIE 397 (539)
Q Consensus 387 ~aDlVi~avpe 397 (539)
++|+||.|+|-
T Consensus 192 ~aDiVInaTp~ 202 (284)
T PRK12549 192 AADGLVHATPT 202 (284)
T ss_pred CCCEEEECCcC
Confidence 88999998873
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=66.03 Aligned_cols=96 Identities=13% Similarity=0.056 Sum_probs=68.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
-++|+|+|+|.+|..+|+.|...| .++.| .|++...+...+.. ....+..+.+.
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~r~~~~~~~~~~~~------------------------~~~~d~~~~~~ 216 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFG-CVILYHSRTQLPPEEAYEYY------------------------AEFVDIEELLA 216 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhcc-ceeeeecccCCchhhHHHhc------------------------ccccCHHHHHh
Confidence 468999999999999999999999 55555 56554444332210 00112226688
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
.+|+|+.+.|-+.+...-+=+++...++++.+|+...-+--+
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~ii 258 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAII 258 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccc
Confidence 999999999988887666667899999999988865545333
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00098 Score=70.07 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=61.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+.. .| ... .++ +.++.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----------~G-------------~~~-~~leell~~ 309 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----------EG-------------YQV-VTLEDVVET 309 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----------cC-------------cee-ccHHHHHhc
Confidence 48999999999999999999999999999999876433211 11 111 122 55789
Q ss_pred cCEEEEcccCChhHHHHHH-HHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIF-SELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~-~~l~~~~~~~~ii~s~ts~ 425 (539)
+|+||.+... +.++ .+..+.++++++++..+..
T Consensus 310 ADIVI~atGt-----~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 310 ADIFVTATGN-----KDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CCEEEECCCc-----ccccCHHHHhccCCCcEEEEcCCC
Confidence 9999998642 2333 3456678999988754443
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=67.69 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=49.4
Q ss_pred ceEEEEcCCCCcH-HHHHHHHHC-----CCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 309 RKVAVIGGGLMGS-GIATAHILN-----NIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 309 ~kI~iIG~G~mG~-~iA~~l~~~-----G~~V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
+||+|||+|..-+ .+...|++. +-+|+++|++ +++++....-.+. ..+....+ -.+..++|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~----~~~~~~~~--------~~v~~t~d 68 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKR----MVKKAGLP--------IKVHLTTD 68 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHH----HHHhhCCC--------eEEEEeCC
Confidence 4899999998633 445555552 3589999999 7887664332222 22221111 24667788
Q ss_pred c-cCCCCcCEEEEcc
Q 009256 382 Y-SEFKDVDMVIEAV 395 (539)
Q Consensus 382 ~-~~~~~aDlVi~av 395 (539)
. +++.+||+||.++
T Consensus 69 ~~~al~gadfVi~~~ 83 (419)
T cd05296 69 RREALEGADFVFTQI 83 (419)
T ss_pred HHHHhCCCCEEEEEE
Confidence 8 8899999999876
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=66.51 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.+|...+..++. .+. +|.+|||++++.+.+.+.+...+ + -.+...++. +.+
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~------~-----------~~~~~~~~~~~~~ 190 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF------N-----------TEIYVVNSADEAI 190 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 479999999999998887754 454 89999999999887766543211 1 012223444 568
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.++|+||.|.|.... ++. ..+++++.|....+.
T Consensus 191 ~~aDiVi~aT~s~~p----~i~---~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 191 EEADIIVTVTNAKTP----VFS---EKLKKGVHINAVGSF 223 (325)
T ss_pred hcCCEEEEccCCCCc----chH---HhcCCCcEEEecCCC
Confidence 899999999986532 232 456889888766554
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0015 Score=66.65 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|.+|...+..+.. .+. +|++|+|++++.+.+.+++...+ + -.+...++. +.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~------g-----------~~v~~~~~~~~av 192 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL------G-----------IDVTAATDPRAAM 192 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 479999999999999999974 664 79999999999888766542111 1 012223444 568
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
.+||+|+.|+|....+.. .+.+++++.+....+..
T Consensus 193 ~~aDiVvtaT~s~~p~i~------~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 193 SGADIIVTTTPSETPILH------AEWLEPGQHVTAMGSDA 227 (326)
T ss_pred ccCCEEEEecCCCCcEec------HHHcCCCcEEEeeCCCC
Confidence 899999999986543321 13467888776544443
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=68.22 Aligned_cols=79 Identities=25% Similarity=0.218 Sum_probs=55.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
|++|.|||+|.+|+.+|..|+++| ++|++.||+.++++++.+.... -++.-.++.... ..+ +.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~----------~al~~li 66 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADV----------DALVALI 66 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccCh----------HHHHHHH
Confidence 468999999999999999999999 8999999999998887553211 001001111111 011 457
Q ss_pred CCcCEEEEcccCChh
Q 009256 386 KDVDMVIEAVIESVP 400 (539)
Q Consensus 386 ~~aDlVi~avpe~~~ 400 (539)
++.|+||.++|....
T Consensus 67 ~~~d~VIn~~p~~~~ 81 (389)
T COG1748 67 KDFDLVINAAPPFVD 81 (389)
T ss_pred hcCCEEEEeCCchhh
Confidence 888999999985443
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00068 Score=68.88 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=62.2
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCC-------CeEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 009256 310 KVAVIGG-GLMGSGIATAHILNN-------IYVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G-------~~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (539)
||+|+|+ |.+|+.++..|...+ .+|+++|+++.. ++...-++.+. .. .....+...
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~------------~~--~~~~~~~~~ 69 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC------------AF--PLLKSVVAT 69 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhc------------cc--cccCCceec
Confidence 7999998 999999999998854 589999997631 22110000000 00 001223334
Q ss_pred CCc-cCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 380 LDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 380 ~~~-~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
.++ +++++||+||.+... +..+.+++...+.++.+++.+++..+.
T Consensus 70 ~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 70 TDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 554 889999999987621 222335566677888766776654444
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0012 Score=69.66 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..|...| .+|+++++++++.+...+.+. ...++ + .+. +.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g--------~~~i~------------~-~~l~~~l~ 239 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELG--------GEAVK------------F-EDLEEYLA 239 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC--------CeEee------------H-HHHHHHHh
Confidence 48999999999999999999999 789999999987665433210 00011 1 122 5567
Q ss_pred CcCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecC
Q 009256 387 DVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++|+||.|++.... +..+.++.....-+...++++..
T Consensus 240 ~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 240 EADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred hCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 89999999864433 33344443322111234555544
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0022 Score=58.49 Aligned_cols=76 Identities=22% Similarity=0.224 Sum_probs=55.1
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.| |..++..|.+.|.+|++++++.+.+. +.+.+
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~-------------------------------------~~l~~ 87 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLK-------------------------------------EHTKQ 87 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHH-------------------------------------HHHhh
Confidence 48999999997 88899999999999999998853221 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
||+||.+++..--+..+ .++++.++++....-.+
T Consensus 88 aDiVIsat~~~~ii~~~-------~~~~~~viIDla~prdv 121 (168)
T cd01080 88 ADIVIVAVGKPGLVKGD-------MVKPGAVVIDVGINRVP 121 (168)
T ss_pred CCEEEEcCCCCceecHH-------HccCCeEEEEccCCCcc
Confidence 99999999753322222 34567777776654443
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0015 Score=68.65 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|.|.+|..+|..+...|.+|+++|+++.+...+.. .| .... +. +.++.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~-----------~G-------------~~vv-~leEal~~ 309 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM-----------EG-------------YQVL-TLEDVVSE 309 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh-----------cC-------------Ceec-cHHHHHhh
Confidence 58999999999999999999999999999999876443311 11 1111 12 45678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+|+||++..... .+..+..+.++++.+++..+.
T Consensus 310 ADVVI~tTGt~~----vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 310 ADIFVTTTGNKD----IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred CCEEEECCCCcc----chHHHHHhcCCCCCEEEEcCC
Confidence 999998765322 223455667899988875544
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.01 Score=56.34 Aligned_cols=143 Identities=19% Similarity=0.220 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceE--EEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKA--IVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~--vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.++.++...+...|-.++.++..+- +-|-+.|+...+|-=+.. ......++ +.|...+-||...
T Consensus 48 ~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~-------------v~~glaIy-D~m~~ik~~V~Tv 113 (222)
T PRK12552 48 QVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGF-------------ETEAFAIC-DTMRYIKPPVHTI 113 (222)
T ss_pred chhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccc-------------cccHHHHH-HHHHhcCCCeEEE
Confidence 3445588888888877765443222 333444444444410000 01123555 6788888999999
Q ss_pred EcCccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHH
Q 009256 105 VEGLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEM 162 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l 162 (539)
+-|.|.+.+.-|++++|- |++.++++|-+....-|. .|-+. .+...-| ...-.++
T Consensus 114 ~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~---~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d 190 (222)
T PRK12552 114 CIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA---RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKD 190 (222)
T ss_pred EEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999995 899999998876654332 12111 1111222 1333344
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-....++|+||+++||||+|+..
T Consensus 191 ~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 191 TDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred hcCCCcCCHHHHHHcCCCcEEecc
Confidence 555678899999999999999854
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=65.87 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=52.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+++.|+|+|.+|.+++..|...| .+|++++|+.++++.+.+.+... . .+....+. +.+.
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-------~------------~~~~~~~~~~~~~ 184 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-------G------------KAELDLELQEELA 184 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-------c------------ceeecccchhccc
Confidence 47999999999999999999999 69999999998887765543210 0 01111122 5568
Q ss_pred CcCEEEEcccCCh
Q 009256 387 DVDMVIEAVIESV 399 (539)
Q Consensus 387 ~aDlVi~avpe~~ 399 (539)
++|+||.++|...
T Consensus 185 ~~DivInaTp~g~ 197 (278)
T PRK00258 185 DFDLIINATSAGM 197 (278)
T ss_pred cCCEEEECCcCCC
Confidence 8999999998544
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0021 Score=64.60 Aligned_cols=94 Identities=13% Similarity=0.113 Sum_probs=65.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|..|...+..+..- .+ +|.+|+|++++.+.+.+++...+ + -.+...++. +++
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~------~-----------~~v~~~~~~~eav 180 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF------G-----------VDIRPVDNAEAAL 180 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc------C-----------CcEEEeCCHHHHH
Confidence 4799999999999998887753 33 89999999999998876653211 1 123344555 778
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+||+|+.+.+....+.. .+.++|++.|....+.
T Consensus 181 ~~aDIV~taT~s~~P~~~------~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 181 RDADTITSITNSDTPIFN------RKYLGDEYHVNLAGSN 214 (301)
T ss_pred hcCCEEEEecCCCCcEec------HHHcCCCceEEecCCC
Confidence 999999999876543321 2356788777655544
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0012 Score=61.93 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=37.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|+|+ |.+|..++..|++.|++|++++|++++++...+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~ 71 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS 71 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 47999996 9999999999999999999999998887766544
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0025 Score=54.91 Aligned_cols=101 Identities=21% Similarity=0.200 Sum_probs=59.8
Q ss_pred eEEEEcC-CCCcHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccCC
Q 009256 310 KVAVIGG-GLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF 385 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 385 (539)
||+|||+ |.+|..++..+... ++++..+ +++.+..+..... .+.+... ....+. .+.+ .
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~----------~~~~~~~------~~~~~~~~~~~-~ 63 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEA----------GPHLKGE------VVLELEPEDFE-E 63 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHH----------Ccccccc------cccccccCChh-h
Confidence 5899995 89999999999884 8888766 5543322222110 0000000 000011 1112 2
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
.++|+||.|+|++... .+...+...+.+++++++.++.+...
T Consensus 64 ~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~~~ 105 (122)
T smart00859 64 LAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFRMD 105 (122)
T ss_pred cCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCccccCC
Confidence 4899999999977543 33334445568899999888876643
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=68.17 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=60.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..+...|. +|+++++++++.+.+.+.+. ....+ ..+. +.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g--------~~~~~-------------~~~~~~~l~ 241 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG--------GEAIP-------------LDELPEALA 241 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--------CcEee-------------HHHHHHHhc
Confidence 489999999999999999999997 89999999988765533210 00000 1122 4567
Q ss_pred CcCEEEEcccCChh-HHHHHHHHHHHhC-CCCeEEEecC
Q 009256 387 DVDMVIEAVIESVP-LKQKIFSELEKAC-PPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe~~~-~~~~~~~~l~~~~-~~~~ii~s~t 423 (539)
++|+||.|++.... +....++.....- ..+.++++.+
T Consensus 242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeC
Confidence 89999999975443 3334444432111 2345666554
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.033 Score=55.31 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=63.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC----CceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCc
Q 009256 25 VNALAIPIVAGLKDKFEEATSRD----DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d~----~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 100 (539)
.-+++......+..+++.+.++. .+-+|.|.-.| |+.+.|-.. . ...+.+.+..+. .+... +|
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSG-----GaRlqEg~~----~-L~~~a~i~~~~~--~ls~~-VP 147 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFETG-----GVRLQEANA----G-LAAIAEIMRAIV--DLRAA-VP 147 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEecCC-----CcCccchHH----H-HHHHHHHHHHHH--HHhCC-CC
Confidence 47888889999999999887654 25566664333 233322110 0 001111121222 24444 99
Q ss_pred EEEEEcCc--cccchhHhhhccCEEEeeCCceEeC
Q 009256 101 IVAAVEGL--ALGGGLELAMGCHARIAAPKTQLGL 133 (539)
Q Consensus 101 ~iaav~G~--a~GgG~~lal~~D~~ia~~~a~f~~ 133 (539)
+|+.+.|. |+||+...+.+||++|+++++++++
T Consensus 148 ~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igl 182 (301)
T PRK07189 148 VIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGL 182 (301)
T ss_pred EEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEec
Confidence 99999999 9999999999999999999988876
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0019 Score=61.46 Aligned_cols=32 Identities=31% Similarity=0.463 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (539)
.+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 379999999999999999999998 59999988
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.004 Score=62.85 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=68.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.+.++|||+|.++......+..- .-+|.+|+|+++..++...+..+.+. ..+...++. ++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-----------------~~v~a~~s~~~a 192 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-----------------EAVGAADSAEEA 192 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-----------------ccceeccCHHHH
Confidence 45799999999999999888763 34999999999999988765432211 113445555 78
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+++||+|+.++|.+..+.. .+.+++++.|....+.
T Consensus 193 v~~aDiIvt~T~s~~Pil~------~~~l~~G~hI~aiGad 227 (330)
T COG2423 193 VEGADIVVTATPSTEPVLK------AEWLKPGTHINAIGAD 227 (330)
T ss_pred hhcCCEEEEecCCCCCeec------HhhcCCCcEEEecCCC
Confidence 9999999999987664321 2457799888765553
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0032 Score=64.32 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.+|...+..+.. .+ .+|++|+|++++.+.+.+++++.+ + -.+....+. +++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~------g-----------~~v~~~~d~~~al 195 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL------G-----------IPVTVARDVHEAV 195 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc------C-----------ceEEEeCCHHHHH
Confidence 479999999999998888875 45 589999999999888766543211 1 012234455 668
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
.++|+||.+.|....+... ..+++++.+....+
T Consensus 196 ~~aDiVi~aT~s~~p~i~~------~~l~~g~~v~~vg~ 228 (330)
T PRK08291 196 AGADIIVTTTPSEEPILKA------EWLHPGLHVTAMGS 228 (330)
T ss_pred ccCCEEEEeeCCCCcEecH------HHcCCCceEEeeCC
Confidence 8999999999865433211 23566665544333
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0085 Score=51.21 Aligned_cols=76 Identities=24% Similarity=0.199 Sum_probs=52.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
||+|||+|.+|......+.+. +.+|+ ++|+++++.+...+. -.+...++. +.+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-----------------------~~~~~~~~~~~ll 58 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-----------------------YGIPVYTDLEELL 58 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-----------------------TTSEEESSHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-----------------------hcccchhHHHHHH
Confidence 799999999999999888876 45654 789999887776332 122344555 334
Q ss_pred C--CcCEEEEcccCChhHHHHHHHHHH
Q 009256 386 K--DVDMVIEAVIESVPLKQKIFSELE 410 (539)
Q Consensus 386 ~--~aDlVi~avpe~~~~~~~~~~~l~ 410 (539)
. +.|+|++++|.... ........
T Consensus 59 ~~~~~D~V~I~tp~~~h--~~~~~~~l 83 (120)
T PF01408_consen 59 ADEDVDAVIIATPPSSH--AEIAKKAL 83 (120)
T ss_dssp HHTTESEEEEESSGGGH--HHHHHHHH
T ss_pred HhhcCCEEEEecCCcch--HHHHHHHH
Confidence 3 78999999986553 34444433
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0062 Score=56.93 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=56.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILN--NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~--G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
+|++||+|.+|..+...+... .+ .|.+||++.+++..+.+.. . ....+++ +.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~----------------------~-~~~~s~ide~~ 58 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV----------------------G-RRCVSDIDELI 58 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc----------------------C-CCccccHHHHh
Confidence 799999999999999877643 24 6789999999877664321 1 1122555 445
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
.+.|+++||.. .+..++...++.+. .-+++|+|.
T Consensus 59 ~~~DlvVEaAS--~~Av~e~~~~~L~~-g~d~iV~SV 92 (255)
T COG1712 59 AEVDLVVEAAS--PEAVREYVPKILKA-GIDVIVMSV 92 (255)
T ss_pred hccceeeeeCC--HHHHHHHhHHHHhc-CCCEEEEec
Confidence 89999999986 44444444443322 235566543
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.035 Score=59.88 Aligned_cols=170 Identities=12% Similarity=0.104 Sum_probs=106.1
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 13 ~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+.-.-|.=|+|. .-++++.-.+...+.++.+.+. .+-+|.|.-.++ |..|.+-+. ........+++
T Consensus 314 G~~V~vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E~----------~g~~~~~a~~~ 381 (512)
T TIGR01117 314 GQSVGIIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQEY----------GGIIRHGAKVL 381 (512)
T ss_pred CEEEEEEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHHH----------HHHHHHHHHHH
Confidence 333334446664 3679999999999999988764 566666643332 655543221 11112233455
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhh----ccCEEEeeCCceEeCCcccCCCCCCcchhhcccc-ccC----HHHHHH
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVG----LSKAIE 161 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~vG----~~~a~~ 161 (539)
.++.+..+|.|+.|-|.++|||..-.. .+|+++|.+++.++. +++-++...+-+ .+- ...+.+
T Consensus 382 -~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~ 453 (512)
T TIGR01117 382 -YAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRK 453 (512)
T ss_pred -HHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHH
Confidence 567889999999999999888654333 289999998887764 332333222211 110 111111
Q ss_pred HH---HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHh
Q 009256 162 MM---LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (539)
Q Consensus 162 l~---l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (539)
-. ..-+..++..+.+.|+||.|+++.+.......+.+.+..
T Consensus 454 ~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 454 QKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES 497 (512)
T ss_pred HHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence 11 122345788999999999999999998877777765543
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.013 Score=59.01 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=45.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEE-EeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~-~d~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
-+|+|||.|.||...+..+.+. +++++. +|+++ +.+.. . . + ...+.+. +.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~---~----------~------------~-v~~~~d~~e~ 57 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT---E----------T------------P-VYAVADDEKH 57 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh---c----------C------------C-ccccCCHHHh
Confidence 4899999999999999988765 788874 69985 32211 0 0 1 1112223 44
Q ss_pred CCCcCEEEEcccCChh
Q 009256 385 FKDVDMVIEAVIESVP 400 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~ 400 (539)
+.++|+|+.|.|....
T Consensus 58 l~~iDVViIctPs~th 73 (324)
T TIGR01921 58 LDDVDVLILCMGSATD 73 (324)
T ss_pred ccCCCEEEEcCCCccC
Confidence 5789999999987665
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0015 Score=70.16 Aligned_cols=84 Identities=15% Similarity=0.169 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..|...|. +|++++|++++.+.+.+.+. +. . -.....++. +.+.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------g~-~--------i~~~~~~dl~~al~ 328 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------DV-E--------IIYKPLDEMLACAA 328 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------CC-c--------eEeecHhhHHHHHh
Confidence 589999999999999999999997 79999999988877644320 00 0 001111222 5678
Q ss_pred CcCEEEEcccCCh-hHHHHHHHHHH
Q 009256 387 DVDMVIEAVIESV-PLKQKIFSELE 410 (539)
Q Consensus 387 ~aDlVi~avpe~~-~~~~~~~~~l~ 410 (539)
++|+||.|++... -+..+.++.+.
T Consensus 329 ~aDVVIsAT~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 329 EADVVFTSTSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCEEEEccCCCCCeeCHHHHHHhh
Confidence 9999999986433 34445555543
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0038 Score=63.61 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.+|...+..+... +. .|.+||+++++.+.+.+++...+ + -.+...++. +.+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~------~-----------~~v~~~~~~~~~l 192 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV------G-----------CDVTVAEDIEEAC 192 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc------C-----------ceEEEeCCHHHHh
Confidence 4899999999999999988743 43 78899999998888766542110 1 012334455 445
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
. +|+|+.|.|....+.. .+.+++++.|.+..+..+
T Consensus 193 ~-aDiVv~aTps~~P~~~------~~~l~~g~hV~~iGs~~p 227 (326)
T PRK06046 193 D-CDILVTTTPSRKPVVK------AEWIKEGTHINAIGADAP 227 (326)
T ss_pred h-CCEEEEecCCCCcEec------HHHcCCCCEEEecCCCCC
Confidence 5 9999999986543321 235688988776655433
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.019 Score=57.14 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=88.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH-CCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC--
Q 009256 310 KVAVIGGGLMGSGIATAHIL-NNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-- 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~-~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 385 (539)
+||+||+|.||+.|+....+ .|.+|+.+ |++.+...++.++....-...++....+.-..+-..+.+..++|.+.+
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~~ 98 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELIIA 98 (438)
T ss_pred EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhhc
Confidence 79999999999999988875 69887755 888887777655321111111222212222222233556666666433
Q ss_pred -CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC-CCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCC
Q 009256 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS-TIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (539)
Q Consensus 386 -~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts-~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~ 463 (539)
...|+||++..-...--+..+..| .....++..|.- ...+..+..... +-.|.- ...+..
T Consensus 99 ~~~IdvIIdATG~p~vGA~~~l~Ai---~h~KHlVMmNVEaDvtIGp~Lk~~A---d~~Gvi------------yS~~~G 160 (438)
T COG4091 99 NDLIDVIIDATGVPEVGAKIALEAI---LHGKHLVMMNVEADVTIGPILKQQA---DAAGVI------------YSGGAG 160 (438)
T ss_pred CCcceEEEEcCCCcchhhHhHHHHH---hcCCeEEEEEeeeceeecHHHHHHH---hhcCeE------------EeccCC
Confidence 456888887642222222333333 334445544432 122222211111 111322 223334
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
..|..+-.+.+|.+++|..++.++
T Consensus 161 DeP~~~mEL~efa~a~G~evv~aG 184 (438)
T COG4091 161 DEPSSCMELYEFASALGFEVVSAG 184 (438)
T ss_pred CCcHHHHHHHHHHHhcCCeEEecc
Confidence 467777888899999999999985
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0026 Score=68.17 Aligned_cols=71 Identities=17% Similarity=0.213 Sum_probs=52.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++++|+|+|.+|.+++..|.+.|++|+++|+++++.+...+.+. ....+ ..+...+.++
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~--------~~~~~-------------~~~~~~l~~~ 391 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQ--------GKAFP-------------LESLPELHRI 391 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------cceec-------------hhHhcccCCC
Confidence 47999999999999999999999999999999887766533210 00000 1122336789
Q ss_pred CEEEEcccCChh
Q 009256 389 DMVIEAVIESVP 400 (539)
Q Consensus 389 DlVi~avpe~~~ 400 (539)
|+||.|+|....
T Consensus 392 DiVInatP~g~~ 403 (477)
T PRK09310 392 DIIINCLPPSVT 403 (477)
T ss_pred CEEEEcCCCCCc
Confidence 999999997653
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0044 Score=62.69 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|.++...+..+..- --+|.+|+|++++.+++.+..++ .+ -.+...++. +++
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQA-------LG-----------FAVNTTLDAAEVA 190 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh-------cC-----------CcEEEECCHHHHh
Confidence 4899999999999999887653 24899999999998887654321 11 123334555 778
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
++||+|+.+.+....+.+ .+.+++++.|....+..+
T Consensus 191 ~~ADIV~taT~s~~P~~~------~~~l~~G~hi~~iGs~~p 226 (315)
T PRK06823 191 HAANLIVTTTPSREPLLQ------AEDIQPGTHITAVGADSP 226 (315)
T ss_pred cCCCEEEEecCCCCceeC------HHHcCCCcEEEecCCCCc
Confidence 999999999875543321 135678988776655433
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0043 Score=62.75 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=58.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHH---CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc--cCC-
Q 009256 309 RKVAVIGG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VLD- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~- 381 (539)
+||+|||+ |.+|..++..+.. .+++++++|+++.. +...-.+. ..+. ...+.. .++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~alDl~-------~~~~---------~~~i~~~~~~d~ 63 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGVAVDLS-------HIPT---------AVKIKGFSGEDP 63 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cceehhhh-------cCCC---------CceEEEeCCCCH
Confidence 48999999 9999999998855 35699999998542 11000010 0000 011221 345
Q ss_pred ccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 382 ~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
++++++||+||.|... +....+.+.+.+.++. ++.+++..+.
T Consensus 64 ~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvsN 119 (312)
T PRK05086 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTC-PKACIGIITN 119 (312)
T ss_pred HHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccC
Confidence 3789999999998742 1124445556677664 4555554343
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.012 Score=55.50 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.+|...+..|.+.|.+|++++++.. .+... .+.+.+.. ..-.-..+.+.+
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l-----------~~~~~i~~---------~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKL-----------VEEGKIRW---------KQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHH-----------HhCCCEEE---------EecCCChhhcCC
Confidence 5899999999999999999999999999986532 12221 12121110 000111245889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC--CCCCeeeeecCCCCc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~--~~~~~vei~~~~~t~ 465 (539)
+|+||.++. +.++...+.. .+..+. ++.+....+. ..|+.|. ..+++..-+.+.+.+
T Consensus 71 adlViaaT~-d~elN~~i~~----~a~~~~-lvn~~d~~~~---------------~~f~~Pa~~~~g~l~iaIsT~G~s 129 (202)
T PRK06718 71 AFLVIAATN-DPRVNEQVKE----DLPENA-LFNVITDAES---------------GNVVFPSALHRGKLTISVSTDGAS 129 (202)
T ss_pred ceEEEEcCC-CHHHHHHHHH----HHHhCC-cEEECCCCcc---------------CeEEEeeEEEcCCeEEEEECCCCC
Confidence 999988764 5555544433 233333 3322211111 1122222 234455556666678
Q ss_pred HHHHHHHHHHHHH
Q 009256 466 AQVILDLMTVGKI 478 (539)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (539)
|.....++.-++.
T Consensus 130 P~la~~lr~~ie~ 142 (202)
T PRK06718 130 PKLAKKIRDELEA 142 (202)
T ss_pred hHHHHHHHHHHHH
Confidence 8777777776665
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0022 Score=59.21 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=33.1
Q ss_pred EEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHH
Q 009256 311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (539)
Q Consensus 311 I~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (539)
|.|+|+ |.+|..++..|++.|++|+++.|++++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 689996 999999999999999999999999987665
|
... |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0024 Score=66.21 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=60.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
.+|.|||+|.+|...+..+...|.+|+++|+++++++.+...... .+.....+ ..++ +.+++
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~-------------~~~l~~~l~~ 230 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSN-------------AYEIEDAVKR 230 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCC-------------HHHHHHHHcc
Confidence 479999999999999999999999999999999876655332100 00000000 0112 45678
Q ss_pred cCEEEEcccC--ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe--~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+|+||.+++- .... .-+-++....++++.+|++.+
T Consensus 231 aDvVI~a~~~~g~~~p-~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 231 ADLLIGAVLIPGAKAP-KLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCEEEEccccCCCCCC-cCcCHHHHhcCCCCCEEEEEe
Confidence 9999999732 1111 011233344567887776533
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0079 Score=52.06 Aligned_cols=102 Identities=19% Similarity=0.172 Sum_probs=58.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHH-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|+|+ |.||+.++..+.+ .|+++. .+|++++.... +.+ ......+. ..+..++++ +.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~----g~~~~~~~----------~~~~v~~~l~~~ 64 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDV----GELAGIGP----------LGVPVTDDLEEL 64 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBC----HHHCTSST-----------SSBEBS-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chh----hhhhCcCC----------cccccchhHHHh
Confidence 37999999 9999999999998 688855 56777621110 000 00000000 224445666 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
+..+|+||+.. .++.....++...+ .+..+++.|++....++
T Consensus 65 ~~~~DVvIDfT--~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~ 106 (124)
T PF01113_consen 65 LEEADVVIDFT--NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQI 106 (124)
T ss_dssp TTH-SEEEEES---HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHH
T ss_pred cccCCEEEEcC--ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHH
Confidence 77799999887 34444444444443 36667778888876544
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0032 Score=63.74 Aligned_cols=93 Identities=17% Similarity=0.136 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|..+..-+..+.. .+. +|.+|+|++++.+.+.++++. .+ -.+...++. +++
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-------~~-----------~~v~~~~~~~~av 190 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-------LG-----------VPVVAVDSAEEAV 190 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------CC-----------TCEEEESSHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------cc-----------ccceeccchhhhc
Confidence 479999999999999888765 444 899999999998888765432 01 124445566 789
Q ss_pred CCcCEEEEcccCCh--hHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~--~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++||+|+.|.|... .+.. .+.+++++.|....+.
T Consensus 191 ~~aDii~taT~s~~~~P~~~------~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 191 RGADIIVTATPSTTPAPVFD------AEWLKPGTHINAIGSY 226 (313)
T ss_dssp TTSSEEEE----SSEEESB-------GGGS-TT-EEEE-S-S
T ss_pred ccCCEEEEccCCCCCCcccc------HHHcCCCcEEEEecCC
Confidence 99999999998655 3311 2357889888766554
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.052 Score=58.56 Aligned_cols=146 Identities=21% Similarity=0.192 Sum_probs=93.6
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCC--CchhhhhhcCCCcccccchHHHHHHH
Q 009256 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF--DINVFQKVHGAGDVSLMPDVSVELVV 91 (539)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~--Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (539)
..|..+.+. .-+++......+..+++.+..+. +-+|.|.- |.|+ ++++-... ...+...+.. +
T Consensus 59 v~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~~-----l~~~g~i~~~-~- 125 (493)
T PF01039_consen 59 VVVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVES-----LMGMGRIFRA-I- 125 (493)
T ss_dssp EEEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHHH-----HHHHHHHHHH-H-
T ss_pred EEEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhhh-----hhhhHHHHHH-H-
Confidence 334444553 47899999999999999888764 45565543 3344 44432211 1111222222 2
Q ss_pred HHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 92 ~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
..+.. ..|+|+++.|+|+|||..++..||++|+.++ +.+++. |+.. .+ ..+|+.++
T Consensus 126 ~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~--------------------GP~v-v~-~~~Ge~~~ 182 (493)
T PF01039_consen 126 ARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLA--------------------GPRV-VE-SATGEEVD 182 (493)
T ss_dssp HHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------THHH-HH-HHHSSCTS
T ss_pred HHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEec--------------------cccc-cc-cccCcccc
Confidence 23556 9999999999999999999999999999987 777643 1111 11 24578888
Q ss_pred HHHH-------HHcCCcceecCcch-HHHHHHHHH
Q 009256 171 SEEG-------WKLGLIDAVVTSEE-LLKVSRLWA 197 (539)
Q Consensus 171 a~eA-------~~~Glv~~vv~~~~-l~~~a~~~a 197 (539)
.++. ..-|.+|.++++++ ..+.++++.
T Consensus 183 ~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~l 217 (493)
T PF01039_consen 183 SEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLL 217 (493)
T ss_dssp HHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHH
T ss_pred chhhhhhhhhcccCCCceEEEechHHHHHHHHHhh
Confidence 8764 46799999997763 334444443
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0083 Score=67.33 Aligned_cols=95 Identities=8% Similarity=0.066 Sum_probs=74.8
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCC-CCcEEEeccCCCCC------------CCCe
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH------------VMPL 455 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~-~~r~vg~h~~~p~~------------~~~~ 455 (539)
||.|+| +.....+++++.++++++++|++.+|... +..+...+.. ..+|+|.||+..+. .+..
T Consensus 1 vila~P--v~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAP--VAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcC--HHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 688998 77788999999999999999987776543 3444444443 35799999976553 3456
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.+++.+.++++.+++++++++.+|..++.+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 110 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMS 110 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECC
Confidence 67889999999999999999999999998884
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0083 Score=58.27 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=47.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC---CeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN---IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G---~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.||+|||.|.||..++..+.+.+ +++ .++++++++.+.... .....+++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~-------------------------~~~~~~~l~~ 57 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAG-------------------------RVALLDGLPG 57 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhc-------------------------cCcccCCHHH
Confidence 48999999999999999987542 444 457787766554321 1223444533
Q ss_pred --CCCcCEEEEcccCChhHHHHHHHHH
Q 009256 385 --FKDVDMVIEAVIESVPLKQKIFSEL 409 (539)
Q Consensus 385 --~~~aDlVi~avpe~~~~~~~~~~~l 409 (539)
....|+|+||.. .+..++....+
T Consensus 58 ll~~~~DlVVE~A~--~~av~e~~~~i 82 (267)
T PRK13301 58 LLAWRPDLVVEAAG--QQAIAEHAEGC 82 (267)
T ss_pred HhhcCCCEEEECCC--HHHHHHHHHHH
Confidence 367899999886 44444444433
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0055 Score=60.53 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=54.4
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||.|. +|.++|..|.+.|.+|+++++....++ +.+++
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~-------------------------------------~~~~~ 201 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMA-------------------------------------SYLKD 201 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHHhh
Confidence 5899999988 999999999999999999987532111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++..- ++.. +.+++++++++..+.
T Consensus 202 ADIVIsAvg~p~-----~i~~--~~vk~gavVIDvGi~ 232 (286)
T PRK14175 202 ADVIVSAVGKPG-----LVTK--DVVKEGAVIIDVGNT 232 (286)
T ss_pred CCEEEECCCCCc-----ccCH--HHcCCCcEEEEcCCC
Confidence 999999997432 2221 356888888875543
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0024 Score=54.99 Aligned_cols=99 Identities=18% Similarity=0.183 Sum_probs=59.0
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCC-Ce-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-CccCC
Q 009256 310 KVAVIG-GGLMGSGIATAHILNN-IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEF 385 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~~G-~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~ 385 (539)
||+||| .|.+|..+...|.++- ++ +.++.++.+.-........ ...+ ...+.+.+ +.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~------~~~~----------~~~~~~~~~~~~~~ 64 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFP------HPKG----------FEDLSVEDADPEEL 64 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTG------GGTT----------TEEEBEEETSGHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhcc------cccc----------ccceeEeecchhHh
Confidence 799999 8999999999999853 35 4455665522222211000 0000 01233332 33567
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
.++|+||.|+|. ....++...+ ++.++.|+++++.....
T Consensus 65 ~~~Dvvf~a~~~--~~~~~~~~~~---~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 65 SDVDVVFLALPH--GASKELAPKL---LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp TTESEEEE-SCH--HHHHHHHHHH---HHTTSEEEESSSTTTTS
T ss_pred hcCCEEEecCch--hHHHHHHHHH---hhCCcEEEeCCHHHhCC
Confidence 999999999983 3344554444 45778888888876554
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0055 Score=60.24 Aligned_cols=94 Identities=18% Similarity=0.115 Sum_probs=57.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|+|+ |.||..++..+.+. +++|+ ++|++++..... .. ..+...+++ +.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~------------~~------------~~i~~~~dl~~l 57 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ------------GA------------LGVAITDDLEAV 57 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc------------CC------------CCccccCCHHHh
Confidence 48999998 99999999988764 67766 478887643321 00 112234455 44
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
+.++|+||++.|.+. ..+..... +..+.-++..+++....+.
T Consensus 58 l~~~DvVid~t~p~~--~~~~~~~a---l~~G~~vvigttG~s~~~~ 99 (257)
T PRK00048 58 LADADVLIDFTTPEA--TLENLEFA---LEHGKPLVIGTTGFTEEQL 99 (257)
T ss_pred ccCCCEEEECCCHHH--HHHHHHHH---HHcCCCEEEECCCCCHHHH
Confidence 568999999887433 23333332 2334433344666665543
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.007 Score=60.35 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=37.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|||+|-+|.+++..|+..|. +|++++|++++.+.+.++
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~ 168 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDL 168 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHH
Confidence 479999999999999999999997 799999999988877554
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.004 Score=64.38 Aligned_cols=68 Identities=21% Similarity=0.227 Sum_probs=52.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|-||...|.+|..+| ..|++.+|+.++++.+.+.+. +.....+++ +.+.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~---------------------~~~~~l~el~~~l~ 237 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG---------------------AEAVALEELLEALA 237 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC---------------------CeeecHHHHHHhhh
Confidence 47999999999999999999999 589999999999888765432 011112222 5678
Q ss_pred CcCEEEEcccC
Q 009256 387 DVDMVIEAVIE 397 (539)
Q Consensus 387 ~aDlVi~avpe 397 (539)
++|+||.++..
T Consensus 238 ~~DvVissTsa 248 (414)
T COG0373 238 EADVVISSTSA 248 (414)
T ss_pred hCCEEEEecCC
Confidence 99999988643
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.024 Score=58.91 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=50.9
Q ss_pred ceEEEEcCCCCcHHHH-HHHHH-----CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIA-TAHIL-----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA-~~l~~-----~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.||+|||+|..+.+-- ..+.. .+.++.++|+++++.+.. ......+++....+ -++..++|.
T Consensus 4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i----~~~~~~~v~~~g~~--------~kv~~ttd~ 71 (442)
T COG1486 4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKII----AILAKKLVEEAGAP--------VKVEATTDR 71 (442)
T ss_pred ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHH----HHHHHHHHHhhCCC--------eEEEEecCH
Confidence 4899999999876643 22222 256999999999987733 22233334433222 346778888
Q ss_pred -cCCCCcCEEEEcc
Q 009256 383 -SEFKDVDMVIEAV 395 (539)
Q Consensus 383 -~~~~~aDlVi~av 395 (539)
+++++||+|+.++
T Consensus 72 ~eAl~gAdfVi~~~ 85 (442)
T COG1486 72 REALEGADFVITQI 85 (442)
T ss_pred HHHhcCCCEEEEEE
Confidence 8999999999876
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0044 Score=64.97 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=52.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|-||..++..|...|. ++++++|++++.+.+.+.+.. + .....+++ +.+.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~--------~------------~~~~~~~l~~~l~ 241 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN--------A------------SAHYLSELPQLIK 241 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC--------C------------eEecHHHHHHHhc
Confidence 479999999999999999999995 799999999887766443210 0 01111222 5678
Q ss_pred CcCEEEEcccCCh
Q 009256 387 DVDMVIEAVIESV 399 (539)
Q Consensus 387 ~aDlVi~avpe~~ 399 (539)
++|+||.|++.+.
T Consensus 242 ~aDiVI~aT~a~~ 254 (414)
T PRK13940 242 KADIIIAAVNVLE 254 (414)
T ss_pred cCCEEEECcCCCC
Confidence 8999999986544
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=60.16 Aligned_cols=94 Identities=13% Similarity=0.170 Sum_probs=64.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|..+...+..+.. .. .+|++|+|++++.+.+.++++. .+ -.+...++. +++
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~-------~~-----------~~v~~~~~~~~av 191 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG-------PG-----------LRIVACRSVAEAV 191 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------cC-----------CcEEEeCCHHHHH
Confidence 579999999999888776654 23 4999999999998887665431 11 013334555 778
Q ss_pred CCcCEEEEcccCCh--hHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 386 ~~aDlVi~avpe~~--~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
++||+|+.+++... .+ +. .+.+++++.|....|..
T Consensus 192 ~~ADIIvtaT~S~~~~Pv----l~--~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 192 EGADIITTVTADKTNATI----LT--DDMVEPGMHINAVGGDC 228 (346)
T ss_pred hcCCEEEEecCCCCCCce----ec--HHHcCCCcEEEecCCCC
Confidence 99999999997432 11 11 13568888776555543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.017 Score=49.00 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=58.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|.|+|.|.+|..++..|.+.+.+|+++|.+++..+.+.+.. ...+.....+.+.. .. ..+.+|+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----~~~i~gd~~~~~~l----~~-------a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----VEVIYGDATDPEVL----ER-------AGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----SEEEES-TTSHHHH----HH-------TTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----cccccccchhhhHH----hh-------cCccccCE
Confidence 56999999999999999997779999999999988774421 00011000111100 00 23678999
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
||.+.+++.. ...+...+.+..+...+++-
T Consensus 66 vv~~~~~d~~-n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 66 VVILTDDDEE-NLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp EEEESSSHHH-HHHHHHHHHHHTTTSEEEEE
T ss_pred EEEccCCHHH-HHHHHHHHHHHCCCCeEEEE
Confidence 9988875543 33333445555554555543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.01 Score=61.58 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=64.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHH-C-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHIL-N-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~-~-G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.++++|||+|.++......++. . .+ +|.+|+|++++.+...+++...+. +. ..+...++. +
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~-----~~----------~~v~~~~s~~e 219 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP-----QI----------TNVEVVDSIEE 219 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC-----CC----------ceEEEeCCHHH
Confidence 3579999999999999988876 3 23 999999999999887665432110 00 013344555 7
Q ss_pred CCCCcCEEEEcccCChh--HHHHHHHHHHHhCCCCeEEEecC
Q 009256 384 EFKDVDMVIEAVIESVP--LKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~--~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++++||+|+.|++...+ .+..++. .+.+++++.|....
T Consensus 220 av~~ADIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig 259 (379)
T PRK06199 220 VVRGSDIVTYCNSGETGDPSTYPYVK--REWVKPGAFLLMPA 259 (379)
T ss_pred HHcCCCEEEEccCCCCCCCCcCcEec--HHHcCCCcEEecCC
Confidence 78999999998863220 1112221 23567888775433
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.014 Score=57.42 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=53.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-C---
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-D--- 381 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--- 381 (539)
.++|++||.|.+-.+.-...... |..|..+|+++++.+.+.+-+..... +. .++++.+ |
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~--L~-------------~~m~f~~~d~~~ 185 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG--LS-------------KRMSFITADVLD 185 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H--H--------------SSEEEEES-GGG
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc--cc-------------CCeEEEecchhc
Confidence 35899999999876655444333 45789999999998877543331110 11 2222211 1
Q ss_pred c-cCCCCcCEEEEccc--CChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 382 Y-SEFKDVDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 382 ~-~~~~~aDlVi~avp--e~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
. .+++++|+|+.+.- .+.+-|+.++..|.+++++|+.|+.-
T Consensus 186 ~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 186 VTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G-GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred cccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 1 35788999998863 24447999999999999999988743
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.027 Score=53.30 Aligned_cols=131 Identities=17% Similarity=0.183 Sum_probs=73.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.+|..-+..|++.|.+|++++.+.. .+..+ .+.+.+. .+.-.-..+.+.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l-----------~~~~~i~---------~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLL-----------AEQGGIT---------WLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHH-----------HHcCCEE---------EEeCCCCHHHhCC
Confidence 4899999999999999999999999999987654 12211 2222211 0000111245789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCC--CCCCCeeeeecCCCCc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP--AHVMPLLEIVRTERTS 465 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p--~~~~~~vei~~~~~t~ 465 (539)
+|+||.+. ++.++...+...- ....+++...+.... ..|+.| ...+++..-+.+.+.+
T Consensus 70 ~~lVi~at-~d~~ln~~i~~~a----~~~~ilvn~~d~~e~---------------~~f~~pa~~~~g~l~iaisT~G~s 129 (205)
T TIGR01470 70 AFLVIAAT-DDEELNRRVAHAA----RARGVPVNVVDDPEL---------------CSFIFPSIVDRSPVVVAISSGGAA 129 (205)
T ss_pred cEEEEECC-CCHHHHHHHHHHH----HHcCCEEEECCCccc---------------CeEEEeeEEEcCCEEEEEECCCCC
Confidence 99999775 4555555554433 222333322222111 112222 1334455556666667
Q ss_pred HHHHHHHHHHHHHc
Q 009256 466 AQVILDLMTVGKII 479 (539)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (539)
|.....++.-++.+
T Consensus 130 P~la~~lr~~ie~~ 143 (205)
T TIGR01470 130 PVLARLLRERIETL 143 (205)
T ss_pred cHHHHHHHHHHHHh
Confidence 77766666655543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=56.06 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 379999999999999999999997 899999883
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=62.91 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=61.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
.+|-|+|.|.+|..++..|.++|++|+++|.|+++.+.+.+. ...+-.|..+..+. +. ...+++|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~-----g~~~i~GD~~~~~~---L~-------~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER-----GIRAVLGNAANEEI---MQ-------LAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC-----CCeEEEcCCCCHHH---HH-------hcCcccc
Confidence 579999999999999999999999999999999988877431 00000110010000 00 0236799
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
|.++.++++|.+... +...+.+..+.-.+++
T Consensus 483 ~~viv~~~~~~~~~~-iv~~~~~~~~~~~iia 513 (558)
T PRK10669 483 RWLLLTIPNGYEAGE-IVASAREKRPDIEIIA 513 (558)
T ss_pred CEEEEEcCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 999999987765432 3333444444444554
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0057 Score=63.97 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=46.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCC-C-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC--Cc-cCC
Q 009256 311 VAVIGGGLMGSGIATAHILNN-I-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL--DY-SEF 385 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G-~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~-~~~ 385 (539)
|.|+|+|.+|..++..|++.+ + +|++.|||.+++++..+.+ ....+.. -.+...+ ++ +.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--------~~~~~~~-------~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--------LGDRVEA-------VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----------TTTTEEE-------EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--------cccceeE-------EEEecCCHHHHHHHH
Confidence 789999999999999999986 4 8999999999988775432 1111000 0011111 12 457
Q ss_pred CCcCEEEEcccC
Q 009256 386 KDVDMVIEAVIE 397 (539)
Q Consensus 386 ~~aDlVi~avpe 397 (539)
+++|+||.|+|.
T Consensus 66 ~~~dvVin~~gp 77 (386)
T PF03435_consen 66 RGCDVVINCAGP 77 (386)
T ss_dssp TTSSEEEE-SSG
T ss_pred hcCCEEEECCcc
Confidence 899999999974
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.019 Score=66.38 Aligned_cols=121 Identities=15% Similarity=0.135 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhCCHH-----HHhHHHHHHhhhhccCCCCCCcCCCCCCCcceEEEEcCCCCcHHHHHHHHHC-CCe
Q 009256 260 YSGVLKEAKVFKELVMLDT-----SRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILN-NIY 333 (539)
Q Consensus 260 ~~~l~~e~~~~~~~~~s~~-----~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~iA~~l~~~-G~~ 333 (539)
++.|+...+.+..+....+ ..+..+.|....+-+..-...........+++|+|||+|.||...+..|++. +++
T Consensus 516 ~~~L~~i~~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIlVLGAG~VG~~~a~~La~~~~~~ 595 (1042)
T PLN02819 516 KEVLDQIIDSLTRLANPNEDYISPAREANKIFLKIGKVQQENECNEKAEVTKKSQNVLILGAGRVCRPAAEYLASVKTIS 595 (1042)
T ss_pred HHHHHHHHHHHHHhccccccccccchhhhhhhhhhhcccccccccccccccccCCcEEEECCCHHHHHHHHHHHhCcCcc
Confidence 4455555555555543221 2455555554444332111111112334578999999999999999999875 334
Q ss_pred -------------EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc----cCCCCcCEEEEcc
Q 009256 334 -------------VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY----SEFKDVDMVIEAV 395 (539)
Q Consensus 334 -------------V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~----~~~~~aDlVi~av 395 (539)
|++.|++++.++.+.+... + . ..+.. .+|. +.++++|+||.|+
T Consensus 596 ~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~---------~-~---------~~v~lDv~D~e~L~~~v~~~DaVIsal 656 (1042)
T PLN02819 596 YYGDDSEEPTDVHVIVASLYLKDAKETVEGIE---------N-A---------EAVQLDVSDSESLLKYVSQVDVVISLL 656 (1042)
T ss_pred ccccccccccccEEEEECCCHHHHHHHHHhcC---------C-C---------ceEEeecCCHHHHHHhhcCCCEEEECC
Confidence 9999999988776543210 1 0 00111 1222 3347899999999
Q ss_pred cCCh
Q 009256 396 IESV 399 (539)
Q Consensus 396 pe~~ 399 (539)
|...
T Consensus 657 P~~~ 660 (1042)
T PLN02819 657 PASC 660 (1042)
T ss_pred Cchh
Confidence 9644
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.029 Score=62.15 Aligned_cols=97 Identities=21% Similarity=0.154 Sum_probs=62.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|.|+|.|.+|..+++.|.++|++++++|.|+++++.+.+.- ..+-.|-.+..+. +. ...+.+|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g-----~~v~~GDat~~~~---L~-------~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYG-----YKVYYGDATQLEL---LR-------AAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCC-----CeEEEeeCCCHHH---HH-------hcCCccC
Confidence 5799999999999999999999999999999999988764310 0000110010000 00 0236789
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
|.+|.+++++... ..+...+.++.++-.+++-
T Consensus 466 ~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 466 EAIVITCNEPEDT-MKIVELCQQHFPHLHILAR 497 (601)
T ss_pred CEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEE
Confidence 9999999866543 3344445555555455553
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.013 Score=57.91 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=54.0
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||.|.. |.+++..|.+.|..|+++..... ++ +.++
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--------------------------------------~l~~~~~ 200 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--------------------------------------DLAAHTR 200 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--------------------------------------CHHHHhh
Confidence 48999998877 99999999999999999764321 12 4478
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.||+||.+++..- ++.. +.+++++++++....
T Consensus 201 ~ADIVV~avG~~~-----~i~~--~~ik~gavVIDVGin 232 (285)
T PRK14189 201 QADIVVAAVGKRN-----VLTA--DMVKPGATVIDVGMN 232 (285)
T ss_pred hCCEEEEcCCCcC-----ccCH--HHcCCCCEEEEcccc
Confidence 9999999998322 2332 678899998865543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.037 Score=59.40 Aligned_cols=41 Identities=24% Similarity=0.121 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
.||.|+|+|.+|...+..+...|.+|+++|+++++++.+.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 58999999999999999999999999999999999887644
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.044 Score=58.50 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|+|.+|..++..|.+.|++|+++|++++.++.+.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~ 40 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQ 40 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 3799999999999999999999999999999999877653
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.021 Score=56.07 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=64.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
.||+|||.|..|.--|+...--|-+|++.|+|.+++.++..... +.+. -..+...++ +.+..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~---------~rv~--------~~~st~~~iee~v~~ 231 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG---------GRVH--------TLYSTPSNIEEAVKK 231 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC---------ceeE--------EEEcCHHHHHHHhhh
Confidence 48999999999999999888889999999999998887643221 1000 001111122 67899
Q ss_pred cCEEEEcc--cCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 388 VDMVIEAV--IESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 388 aDlVi~av--pe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
+|+||-+| |-..+ =+-+.++..+.++|+.+|++
T Consensus 232 aDlvIgaVLIpgaka-PkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 232 ADLVIGAVLIPGAKA-PKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred ccEEEEEEEecCCCC-ceehhHHHHHhcCCCcEEEE
Confidence 99999776 21111 12345677778899988875
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.016 Score=57.27 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=41.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC-
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF- 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 385 (539)
.||+|||+|.||..++..+.+. +.++..+ +++.. .+...+. .. .....+++++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~--------~~-------------~~~~~~~d~~~l~ 59 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRA--------LG-------------EAVRVVSSVDALP 59 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhh--------hc-------------cCCeeeCCHHHhc
Confidence 5899999999999999999875 5665543 33221 1111110 00 113334555443
Q ss_pred CCcCEEEEcccCC
Q 009256 386 KDVDMVIEAVIES 398 (539)
Q Consensus 386 ~~aDlVi~avpe~ 398 (539)
.+.|+|++|.|..
T Consensus 60 ~~~DvVve~t~~~ 72 (265)
T PRK13303 60 QRPDLVVECAGHA 72 (265)
T ss_pred cCCCEEEECCCHH
Confidence 5689999999854
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.036 Score=44.49 Aligned_cols=31 Identities=35% Similarity=0.460 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEEeC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEV 339 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~d~ 339 (539)
++++|+|.|.+|.+++..+.+. +.+|++||+
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999999999998 678999886
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.025 Score=57.81 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
++|.|||+|.+|+.+|..|+..|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 379999999999999999999998 899999985
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.055 Score=57.76 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=38.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
.++|.|+|+|.+|..++..|.+.|++|+++|.+++..+.+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999999999998777644
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.05 Score=58.28 Aligned_cols=40 Identities=25% Similarity=0.136 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
.++.|+|+|.+|...+..+...|..|+++|+++++++.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 5899999999999999999999999999999999877654
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.031 Score=55.33 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=38.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|+|+|-.+.+++..|++.|. +|++++|+.++.+++.+.+
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~ 170 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF 170 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 579999999999999999999995 8999999999988886654
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.036 Score=55.11 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=51.6
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||.|. .|.+++..|.+.|.+|+++++....+. +.+++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~-------------------------------------~~~~~ 202 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLP-------------------------------------ELVKQ 202 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHH-------------------------------------HHhcc
Confidence 4799999997 999999999999999999997432211 23578
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+|+||.+++....+ . .+.+++++++++..
T Consensus 203 aDIvI~AtG~~~~v-----~--~~~lk~gavViDvg 231 (283)
T PRK14192 203 ADIIVGAVGKPELI-----K--KDWIKQGAVVVDAG 231 (283)
T ss_pred CCEEEEccCCCCcC-----C--HHHcCCCCEEEEEE
Confidence 99999999522211 1 13467888877544
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.32 Score=52.99 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=89.2
Q ss_pred EEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHH--
Q 009256 16 AIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV-- 91 (539)
Q Consensus 16 ~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (539)
..+.-|.+. .-+++....+.+..+++.+.+.. +-+|.|.-.|+.+ +.+ ..+ .......+.+++.
T Consensus 131 V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DSgGar-----l~~-----q~e-~~~~~~~~g~if~~~ 198 (569)
T PLN02820 131 CMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDSGGAN-----LPR-----QAE-VFPDRDHFGRIFYNQ 198 (569)
T ss_pred EEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-----Ccc-----ccc-ccchHhHHHHHHHHH
Confidence 334445553 48999999999999999887654 5566665333332 211 000 0000001112221
Q ss_pred HHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC
Q 009256 92 NLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170 (539)
Q Consensus 92 ~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~ 170 (539)
..+.....|.|++|.|.|.|||.....+||++|++++ +.+++. |+...+. .+|+.++
T Consensus 199 ~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a--------------------GP~vV~~--~~Ge~v~ 256 (569)
T PLN02820 199 ARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA--------------------GPPLVKA--ATGEEVS 256 (569)
T ss_pred HHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec--------------------CHHHHHh--hcCcccC
Confidence 2245567999999999999999999999999999964 555431 2211111 3566666
Q ss_pred HHHHH-------HcCCcceecCcc-hHHHHHHHHHHHH
Q 009256 171 SEEGW-------KLGLIDAVVTSE-ELLKVSRLWALDI 200 (539)
Q Consensus 171 a~eA~-------~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (539)
+++.- .-|.+|.++++| +..+.++++..-|
T Consensus 257 ~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 257 AEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred HHHhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 66542 468888888665 3334444444433
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.016 Score=52.39 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
++|.|||+|.+|...+..|.+.|++|++++.+
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 58999999999999999999999999999643
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.42 Score=51.64 Aligned_cols=148 Identities=15% Similarity=0.101 Sum_probs=88.2
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.-+... .-+++....+.+..+++.+.++. +-+|.|.-.| |+.+.+-.. ....+...+.. ....
T Consensus 86 v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~dSg-----Garm~eg~~-----~l~~~~~~~~~---~~~~ 151 (512)
T TIGR01117 86 AFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLNDSG-----GARIQEAVD-----ALKGYGDIFYR---NTIA 151 (512)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEecCC-----CCCccccch-----hhhhHHHHHHH---HHHH
Confidence 3444443 47888999999999999887664 4456664332 223321100 00111111111 1123
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCEEEeeCCc-eEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHH
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA 174 (539)
.-..|.|+++.|.|.||+......||++|+.+++ .+++. |+...+. .+|+.+++++.
T Consensus 152 s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a--------------------GP~vv~~--~~Ge~v~~e~l 209 (512)
T TIGR01117 152 SGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT--------------------GPQVIKT--VTGEEVTAEQL 209 (512)
T ss_pred cCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec--------------------ChHHHHh--hcCcccchhhc
Confidence 3458999999999999998888899999999864 44431 1111111 34555555554
Q ss_pred -------HHcCCcceecCcc-hHHHHHHHHHHHHH
Q 009256 175 -------WKLGLIDAVVTSE-ELLKVSRLWALDIA 201 (539)
Q Consensus 175 -------~~~Glv~~vv~~~-~l~~~a~~~a~~la 201 (539)
..-|.+|.+++++ +..+.+++|..-+-
T Consensus 210 GGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp 244 (512)
T TIGR01117 210 GGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLP 244 (512)
T ss_pred chHHHhccccceeEEecCChHHHHHHHHHHHHhCC
Confidence 2579999998554 56666666665553
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.064 Score=51.74 Aligned_cols=160 Identities=13% Similarity=0.144 Sum_probs=81.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhh-------------c
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-------------M 375 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------~ 375 (539)
||.|||+|-+|..+++.|+..|+ +++++|.+.-....+..++ +-..-.-|....+.....+. +
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQf---lf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQF---LFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhcccc---CCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999999999999999999998 8999988744322221110 00000011100011111111 1
Q ss_pred ccccCCc--cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec-CCCCChHHHhhccCCCCcEEEeccCCCCCC
Q 009256 376 LKGVLDY--SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN-TSTIDLNIVGEKTSSQDRIIGAHFFSPAHV 452 (539)
Q Consensus 376 i~~~~~~--~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~-ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~ 452 (539)
+....+. +-+++.|+||.++- +.+. +..+.+..... +..++.. +.+..- ...-..+....+....+..+...
T Consensus 78 i~~~~~~~~~f~~~~DvVi~a~D-n~~a-R~~ln~~c~~~--~iplI~~g~~G~~G-~v~vi~p~~t~c~~C~~~~~~~~ 152 (234)
T cd01484 78 VGPEQDFNDTFFEQFHIIVNALD-NIIA-RRYVNGMLIFL--IVPLIESGTEGFKG-NAQVILPGMTECIECTLYPPQKN 152 (234)
T ss_pred CChhhhchHHHHhCCCEEEECCC-CHHH-HHHHHHHHHHc--CCCEEEEcccCCce-EEEEEcCCCCCCcccCCCCCCCC
Confidence 1100111 34688999999874 4443 33344432222 2333332 222221 11111111112223334333344
Q ss_pred CCeeeeecCCCCcHHHHHHHHHHHH
Q 009256 453 MPLLEIVRTERTSAQVILDLMTVGK 477 (539)
Q Consensus 453 ~~~vei~~~~~t~~e~~~~~~~l~~ 477 (539)
.+...+-..|.+.+..+++++.++.
T Consensus 153 ~p~Cti~~~P~~~~hci~~a~~~~~ 177 (234)
T cd01484 153 FPMCTIASMPRLPEHCIEWARMLQW 177 (234)
T ss_pred CCccccCCCCCCchHHHHHHHHHHh
Confidence 5666777788888888999988876
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.034 Score=56.90 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|.+|+.+|..|+..|+ +++++|.+.
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 379999999999999999999999 999999874
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.093 Score=50.60 Aligned_cols=109 Identities=14% Similarity=0.113 Sum_probs=72.6
Q ss_pred cccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhh---ccC-CCCcEEEeccCCC
Q 009256 375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTS-SQDRIIGAHFFSP 449 (539)
Q Consensus 375 ~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~---~~~-~~~r~vg~h~~~p 449 (539)
.+++++|. ++++++|++|.-.|..-. ...+.+++.+++++++||+ ++=+++...+.. .+. ..-.+..+||-.-
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV 205 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV 205 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 45555554 999999999999985331 2367788999999999885 444555543332 232 2234556666443
Q ss_pred CCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 450 ~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
|.. +.-..+.-...++|.++++.++.++.|+.++.+
T Consensus 206 Pgt-~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~~ 241 (342)
T PRK00961 206 PEM-KGQVYIAEGYADEEAVEKLYEIGKKARGNAFKM 241 (342)
T ss_pred CCC-CCceecccccCCHHHHHHHHHHHHHhCCCeeec
Confidence 322 111122334569999999999999999999987
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.021 Score=60.32 Aligned_cols=37 Identities=30% Similarity=0.452 Sum_probs=33.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
.++|.|||.|.+|.++|..|.+.|++|+++|++++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 4689999999999999999999999999999887643
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.057 Score=52.78 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=41.9
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHH
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEA 353 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~ 353 (539)
..+++.|-|+ +-+|..+|..|+++|++|+++.|++++++.+.++++.
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 4567888896 9999999999999999999999999999999887654
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.12 Score=49.96 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=73.0
Q ss_pred cccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccC-CCCcEEEeccCCC
Q 009256 375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTS-SQDRIIGAHFFSP 449 (539)
Q Consensus 375 ~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~-~~~r~vg~h~~~p 449 (539)
.++.++|. ++++++|++|.-.|..-. ...+.+++.+++++++||+ ++=+++.. .+.+.+. ..-.+..+||-.-
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV 203 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCV 203 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCC
Confidence 45555555 999999999999985331 2367788999999999886 44445544 3333333 2234666676443
Q ss_pred CCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 450 ~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
|..-.-+=++ -...++|.++++.++.++.|+.++.+
T Consensus 204 Pgt~~q~Yi~-egyAtEEqI~klveL~~sa~k~ay~~ 239 (340)
T TIGR01723 204 PEMKGQVYIA-EGYASEEAVNKLYELGKKARGKAFKM 239 (340)
T ss_pred CCCCCceEee-cccCCHHHHHHHHHHHHHhCCCeeec
Confidence 3222222233 34568999999999999999999987
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.013 Score=61.60 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|.+|.|||+|.+|.++|..|++.|++|+++|+++
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3589999999999999999999999999999875
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.026 Score=44.53 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
||.|||+|..|.-+|..|.+.|.+|+++++++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999987755
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.032 Score=55.50 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=37.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|+|+|-.|.+++..|++.|. +|+++||++++.+.+.+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 479999999999999999999997 799999999988877554
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.022 Score=57.00 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=33.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCe-EEEEeCCh---HHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNS---EYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~-V~~~d~~~---~~~~~~ 347 (539)
+++.|+|+|-.|.+++..|+..|.. |++++|++ ++++.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l 169 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQT 169 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHH
Confidence 4688999999999999999999986 99999997 444443
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.14 Score=49.14 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC---eEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI---YVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~---~V~~~d~~ 340 (539)
++|.|+|+|.+|.+++..|...|. +|+++|++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 489999999999999999999997 49999999
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.048 Score=54.12 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=65.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++||+|.|.+|+.+|.++..-|..|+.||+= +.....+ . .+...+-.+.+..
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a-------------~-------------gvq~vsl~Eil~~ 200 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEA-------------F-------------GVQLVSLEEILPK 200 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHh-------------c-------------cceeeeHHHHHhh
Confidence 58999999999999999999999999999853 3322211 1 1222222267889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+|-.-+|-.++.+.-+-.+....++.+.-|+..+-+
T Consensus 201 ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRG 238 (406)
T KOG0068|consen 201 ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARG 238 (406)
T ss_pred cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCC
Confidence 99999999988877666656666778888877644433
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.17 Score=49.19 Aligned_cols=84 Identities=21% Similarity=0.210 Sum_probs=64.5
Q ss_pred HHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHH
Q 009256 93 LIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (539)
Q Consensus 93 ~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~ 172 (539)
.+.++++|+||.|=|---+||.-=..-+|.+.+-++++|+. +.|.+.++..|-. ..+|.+. .....|+|+
T Consensus 183 em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD---~~ka~eA-Ae~mkita~ 252 (317)
T COG0825 183 EMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKD---ASKAKEA-AEAMKITAH 252 (317)
T ss_pred HHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcC---hhhhHHH-HHHcCCCHH
Confidence 48899999999999988777766666789999999999983 4566565554433 2444443 345679999
Q ss_pred HHHHcCCcceecCc
Q 009256 173 EGWKLGLIDAVVTS 186 (539)
Q Consensus 173 eA~~~Glv~~vv~~ 186 (539)
+.+++|+||.|+|+
T Consensus 253 dLk~lgiID~II~E 266 (317)
T COG0825 253 DLKELGIIDGIIPE 266 (317)
T ss_pred HHHhCCCcceeccC
Confidence 99999999999975
|
|
| >PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.037 Score=47.35 Aligned_cols=55 Identities=7% Similarity=0.015 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHh-h-hhccCCCC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA-Q-RATSKVPN 297 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~-k-r~~~~~~~ 297 (539)
+...+.+.++++...++++.+++|...-..++..+|+.|||+|-+= | +.|+|.|.
T Consensus 47 Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LIDKd~~P~W~p~ 103 (118)
T PF13766_consen 47 SLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLIDKDKNPKWSPA 103 (118)
T ss_dssp HHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTTS-------SSS
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHhcCCCCCCCCCC
Confidence 4456678899999999999999999999999999999999999764 4 56877663
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.035 Score=56.93 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=29.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (539)
+|+|||+|-.|+.++..|++.|. +++++|.+
T Consensus 178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred cEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 79999999999999999999998 89999876
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.065 Score=54.99 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=57.5
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--c
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 383 (539)
|.||+|||+ |.+|..++..|.++ +++++.+-.+.+..+...+.. .. +. +.. ... ..+. .
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~----~~-~~-~~~----------~~~-~~~~~~~ 64 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVH----PH-LR-GLV----------DLV-LEPLDPE 64 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhC----cc-cc-ccc----------Cce-eecCCHH
Confidence 468999997 99999999999876 677765433322212121110 00 00 000 001 1111 1
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
...++|+|+.|+|.+.. ..+..++ ...++.|+++++.....
T Consensus 65 ~~~~vD~Vf~alP~~~~--~~~v~~a---~~aG~~VID~S~~fR~~ 105 (343)
T PRK00436 65 ILAGADVVFLALPHGVS--MDLAPQL---LEAGVKVIDLSADFRLK 105 (343)
T ss_pred HhcCCCEEEECCCcHHH--HHHHHHH---HhCCCEEEECCcccCCC
Confidence 35689999999996543 2333333 34678888998876663
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.061 Score=53.12 Aligned_cols=101 Identities=21% Similarity=0.118 Sum_probs=54.9
Q ss_pred ceEEEEc-CCCCcHHHHHHHHH-CCCeEE-EEeCC-hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVN-SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.||+|+| +|.||..++..+.+ .+++++ ++|++ ++...+-... .. +... ..+..+++++.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~-------~~--~~~~--------~gv~~~~d~~~ 64 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGE-------LA--GIGK--------VGVPVTDDLEA 64 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHH-------hc--CcCc--------CCceeeCCHHH
Confidence 4899999 69999999999986 477766 46743 3321110000 00 0000 01333455533
Q ss_pred C-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 385 ~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
+ .++|+||++.+. ..-..... ..+..+.-+++.+++.+..+.
T Consensus 65 l~~~~DvVIdfT~p--~~~~~~~~---~al~~g~~vVigttg~~~e~~ 107 (266)
T TIGR00036 65 VETDPDVLIDFTTP--EGVLNHLK---FALEHGVRLVVGTTGFSEEDK 107 (266)
T ss_pred hcCCCCEEEECCCh--HHHHHHHH---HHHHCCCCEEEECCCCCHHHH
Confidence 3 468999999873 32333333 333344444444557665543
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.072 Score=54.60 Aligned_cols=105 Identities=14% Similarity=0.020 Sum_probs=55.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~ 384 (539)
.||+|+|+|.||..++..+..+ +++|+.+ |++++....+.++. .++. .+... .... -.-..+....+. +.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~--G~~~---~~~~~-~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEK--GYPL---YVADP-EREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhc--CCCc---cccCc-cccccccCCceEEcCChhHh
Confidence 4899999999999999988764 5677654 65654443332210 0000 00000 0000 000123334444 44
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+.++|+||+|.|..... .... .++..++.++++++
T Consensus 76 ~~~vDVVIdaT~~~~~~--e~a~---~~~~aGk~VI~~~~ 110 (341)
T PRK04207 76 LEKADIVVDATPGGVGA--KNKE---LYEKAGVKAIFQGG 110 (341)
T ss_pred hccCCEEEECCCchhhH--HHHH---HHHHCCCEEEEcCC
Confidence 57899999999855432 3322 33344555665554
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.059 Score=45.98 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=53.3
Q ss_pred ceEEEEc----CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIG----GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG----~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
++|+||| -+.+|.-+...|.++|++|+.++...+.+ .......++++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----------------------------~G~~~y~sl~e 51 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----------------------------LGIKCYPSLAE 51 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----------------------------TTEE-BSSGGG
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----------------------------CcEEeeccccC
Confidence 4799999 58889999999999999999998765321 22344555533
Q ss_pred C-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 ~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
. ...|+++.++| ++...++++++...- .+.+++
T Consensus 52 ~p~~iDlavv~~~--~~~~~~~v~~~~~~g-~~~v~~ 85 (116)
T PF13380_consen 52 IPEPIDLAVVCVP--PDKVPEIVDEAAALG-VKAVWL 85 (116)
T ss_dssp CSST-SEEEE-S---HHHHHHHHHHHHHHT--SEEEE
T ss_pred CCCCCCEEEEEcC--HHHHHHHHHHHHHcC-CCEEEE
Confidence 4 78999999998 655667888876653 344443
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.085 Score=46.56 Aligned_cols=73 Identities=19% Similarity=0.243 Sum_probs=53.7
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|+|- ...|.+++..|.+.|.+|+.++.+...++ +.+++
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~-------------------------------------~~v~~ 71 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ-------------------------------------SKVHD 71 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 48999996 56699999999999999999986532111 34688
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++...-++ .+.+++++++++....
T Consensus 72 ADIVvsAtg~~~~i~-------~~~ikpGa~Vidvg~~ 102 (140)
T cd05212 72 ADVVVVGSPKPEKVP-------TEWIKPGATVINCSPT 102 (140)
T ss_pred CCEEEEecCCCCccC-------HHHcCCCCEEEEcCCC
Confidence 999999997553332 2357899988754433
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.063 Score=48.47 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=48.1
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+ ..|.+++..|.++|..|++++.+-..++ +.++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-------------------------------------~~~~~ 79 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-------------------------------------EITRR 79 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-------------------------------------ceeee
Confidence 589999976 5899999999999999999886642222 23578
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
||+||.++...--++ .+.+++++++++.....
T Consensus 80 ADIVVsa~G~~~~i~-------~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK-------ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp SSEEEE-SSSTT-B--------GGGS-TTEEEEE--CEE
T ss_pred ccEEeeeeccccccc-------cccccCCcEEEecCCcc
Confidence 999999997433222 24578999988765543
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.1 Score=57.94 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=60.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (539)
++|-|+|.|.+|..+++.|.++|++++++|.|+++++.+.+. ...+-.|-.+.. +-+ ..+.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~------------~~L~~agi~ 463 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-----GMKVFYGDATRM------------DLLESAGAA 463 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-----CCeEEEEeCCCH------------HHHHhcCCC
Confidence 579999999999999999999999999999999998877431 000111100000 001 2367
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
++|++|.++.++.. ...+...+.++.++-.+++
T Consensus 464 ~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 464 KAEVLINAIDDPQT-SLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred cCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEEE
Confidence 89999999865443 3333344445444444554
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.14 Score=50.05 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=35.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+ |.+|..++..|+++|++|++++++++..+...+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57999985 999999999999999999999999876665433
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.031 Score=58.28 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=34.7
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGI-ATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~i-A~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
+||.++|+|.||++. ...|.+.|++|+++|++++.++.+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~ 42 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNK 42 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhc
Confidence 379999999999855 77888899999999999887777644
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.12 Score=53.35 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=35.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
+|.|+|+|.+|...+..+...|. +|++.|+++++++.+++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 79999999999999888777884 88888999999998755
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.064 Score=52.96 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=52.7
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-|. .|.+++..|.+.|..|+++...-..++ +.++.
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 202 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLR-------------------------------------HHVRN 202 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHH-------------------------------------HHHhh
Confidence 4899999877 899999999999999999975422111 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
||+||.+++-.--+. .+.+++++++++..
T Consensus 203 ADIvi~avG~p~~v~-------~~~vk~gavVIDvG 231 (285)
T PRK10792 203 ADLLVVAVGKPGFIP-------GEWIKPGAIVIDVG 231 (285)
T ss_pred CCEEEEcCCCccccc-------HHHcCCCcEEEEcc
Confidence 999999994222121 25688999988655
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1 Score=45.74 Aligned_cols=41 Identities=24% Similarity=0.153 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|+|+|+|-+|..-.+.....|.+|+.+|+++++.+.+++
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH
Confidence 48999999965554444444489999999999999887644
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.15 Score=48.63 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=49.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.++..=+..|++.|-+|+++...-. .+... ...+.+.. +.-.-+.+.+.+
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l-----------~~~~~i~~---------~~r~~~~~dl~g 85 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDL-----------KKYGNLKL---------IKGNYDKEFIKD 85 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHH-----------HhCCCEEE---------EeCCCChHHhCC
Confidence 3799999999999999999999999999965421 12211 22222110 100111255789
Q ss_pred cCEEEEcccCChhHHHHHHH
Q 009256 388 VDMVIEAVIESVPLKQKIFS 407 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~ 407 (539)
+++||.|+ +|.++-+.+.+
T Consensus 86 ~~LViaAT-dD~~vN~~I~~ 104 (223)
T PRK05562 86 KHLIVIAT-DDEKLNNKIRK 104 (223)
T ss_pred CcEEEECC-CCHHHHHHHHH
Confidence 99999886 46665555443
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.067 Score=44.55 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
++|.|||.|.+|..=+..|++.|.+|+++..+.
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 589999999999999999999999999999886
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.086 Score=52.08 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=52.5
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||.| ..|.++|..|.++|..|+++......+. +.++.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~-------------------------------------~~~~~ 200 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLS-------------------------------------FYTQN 200 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHH-------------------------------------HHHHh
Confidence 489999998 8899999999999999999864432211 23678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
||+||.++...--+. .+.+++++++++...
T Consensus 201 ADIvV~AvG~p~~i~-------~~~vk~GavVIDvGi 230 (285)
T PRK14191 201 ADIVCVGVGKPDLIK-------ASMVKKGAVVVDIGI 230 (285)
T ss_pred CCEEEEecCCCCcCC-------HHHcCCCcEEEEeec
Confidence 999999996322222 235689998876543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.07 Score=51.14 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=34.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++|.|.|+ |.+|..++..|+++|++|++++++++.....
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQT 47 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHH
Confidence 47889985 9999999999999999999999998765544
|
|
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.48 Score=45.76 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=104.6
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHH
Q 009256 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (539)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (539)
++...++-. -.-.+..-.=+.+..+++.+-.+ ...+|+++..| |+-++|-.- ..-++.... ..+ .+
T Consensus 124 vv~av~df~FmgGSmGsVvGeki~ra~E~A~e~-k~P~v~f~aSG-----GARMQEg~l-----SLMQMakts-aAl-~~ 190 (294)
T COG0777 124 VVLAVMDFAFMGGSMGSVVGEKITRAIERAIED-KLPLVLFSASG-----GARMQEGIL-----SLMQMAKTS-AAL-KR 190 (294)
T ss_pred EEEEEEeccccccchhHHHHHHHHHHHHHHHHh-CCCEEEEecCc-----chhHhHHHH-----HHHHHHHHH-HHH-HH
Confidence 444455443 23667777778888899888765 47788888765 333322100 011122212 233 55
Q ss_pred HHhCCCcEEEEEcCccccch-hHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHH
Q 009256 94 IEDCKKPIVAAVEGLALGGG-LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE 172 (539)
Q Consensus 94 i~~~~~p~iaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~ 172 (539)
+.+-..|.|+.+..+..||= ..+++..|+.||-+.|.+||..-++= -+..-..++ .| -=.++
T Consensus 191 l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~AlIGFAGpRVI-------EQTire~LP---------eg-fQ~aE 253 (294)
T COG0777 191 LSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPGALIGFAGPRVI-------EQTIREKLP---------EG-FQTAE 253 (294)
T ss_pred HHhcCCceEEEecCCCccchhHhHHhccCeeecCcccccccCcchhh-------hhhhcccCC---------cc-hhhHH
Confidence 88899999999999999886 48999999999999998887644320 000000010 11 12567
Q ss_pred HHHHcCCcceecCcchHHHHHHHHHHHHHhcCc
Q 009256 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 205 (539)
Q Consensus 173 eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~ 205 (539)
-.++.|+||.||+..++......+...+...++
T Consensus 254 fLlehG~iD~iv~R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 254 FLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred HHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence 778999999999999999888887777666554
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.19 Score=46.65 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=56.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc--CC----
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV--LD---- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~---- 381 (539)
++|.|||- ...|.++|..|.++|..|+++|++.-..-. +.+.+. -+.+ .+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~-------------~~~~~~----------hs~t~~~~~~~~ 119 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFT-------------RGESIR----------HEKHHVTDEEAM 119 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccc-------------cccccc----------cccccccchhhH
Confidence 58999996 455999999999999999999876432110 000000 0001 11
Q ss_pred c-cCCCCcCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 382 Y-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 382 ~-~~~~~aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
+ +.++.||+||.+++..-- ++. +.+++++++++.....
T Consensus 120 l~~~~~~ADIVIsAvG~~~~~i~~-------d~ik~GavVIDVGi~~ 159 (197)
T cd01079 120 TLDCLSQSDVVITGVPSPNYKVPT-------ELLKDGAICINFASIK 159 (197)
T ss_pred HHHHhhhCCEEEEccCCCCCccCH-------HHcCCCcEEEEcCCCc
Confidence 2 557999999999973332 222 3567999998766543
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.16 Score=55.19 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=35.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|.|+ |.+|..++..|++.|++|++++|+.++++...+.
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~ 123 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQS 123 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 46888886 9999999999999999999999999887665443
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.088 Score=50.55 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=36.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|+|+ |.+|..++..|++.|++|++++|+++..+...+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~ 49 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAE 49 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHH
Confidence 57889985 9999999999999999999999998876665443
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.043 Score=58.58 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
++|.|+|+|.+|.++|..|++.|++|+++|++.
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 589999999999999999999999999999985
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.62 Score=44.15 Aligned_cols=131 Identities=22% Similarity=0.217 Sum_probs=77.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||.|..|..=+..|++.|-+|+++..+. +.+... ...+.+. .+.-.-+.+.+.+
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~-----------~~~~~i~---------~~~~~~~~~~~~~ 72 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKAL-----------IEEGKIK---------WIEREFDAEDLDD 72 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHH-----------HHhcCcc---------hhhcccChhhhcC
Confidence 489999999999999999999999999998775 222222 2222221 1111112255667
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC--CCCCeeeeecCCCCc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~--~~~~~vei~~~~~t~ 465 (539)
+++||.+++ |.++.+.+++.-.++ .+++ |....+ +. ..|+.|. ...++..-+.+.+.+
T Consensus 73 ~~lviaAt~-d~~ln~~i~~~a~~~----~i~v-Nv~D~p-----------~~---~~f~~Pa~~~r~~l~iaIsT~G~s 132 (210)
T COG1648 73 AFLVIAATD-DEELNERIAKAARER----RILV-NVVDDP-----------EL---CDFIFPAIVDRGPLQIAISTGGKS 132 (210)
T ss_pred ceEEEEeCC-CHHHHHHHHHHHHHh----CCce-eccCCc-----------cc---CceecceeeccCCeEEEEECCCCC
Confidence 999998875 666666665544332 2333 222211 11 2222222 334555566677778
Q ss_pred HHHHHHHHHHHHHc
Q 009256 466 AQVILDLMTVGKII 479 (539)
Q Consensus 466 ~e~~~~~~~l~~~l 479 (539)
|.....++.-.+.+
T Consensus 133 P~la~~ir~~Ie~~ 146 (210)
T COG1648 133 PVLARLLREKIEAL 146 (210)
T ss_pred hHHHHHHHHHHHHH
Confidence 87777777666553
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.11 Score=51.51 Aligned_cols=41 Identities=20% Similarity=0.024 Sum_probs=36.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
+++.|+|+|-.+.+++..|++.|. +|++++|++++.+.+.+
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~ 164 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAE 164 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 379999999999999999999997 69999999988776644
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.088 Score=54.69 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=60.3
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-- 382 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 382 (539)
..+||+|+|+ |..|..+...|..+ +++|+.+..+...-+...... .. +..+ ......+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~----~~-l~~~------------~~~~~~~~~~ 99 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVF----PH-LITQ------------DLPNLVAVKD 99 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhC----cc-ccCc------------cccceecCCH
Confidence 3458999997 99999999999988 679999877644322211100 00 0000 00001111
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+.++++|+||.|+|.. .-..+... +..++.|+++++.....
T Consensus 100 ~~~~~~DvVf~Alp~~--~s~~i~~~----~~~g~~VIDlSs~fRl~ 140 (381)
T PLN02968 100 ADFSDVDAVFCCLPHG--TTQEIIKA----LPKDLKIVDLSADFRLR 140 (381)
T ss_pred HHhcCCCEEEEcCCHH--HHHHHHHH----HhCCCEEEEcCchhccC
Confidence 3368899999999854 23333333 34567888888765544
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.15 Score=50.24 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=54.2
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+ ..|.++|..|...|..|+++..+...+. +.+++
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~-------------------------------------~~~~~ 195 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLK-------------------------------------AELRQ 195 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHH-------------------------------------HHHhh
Confidence 489999988 7899999999999999999987643222 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++-..-+. .+.+++++++++....
T Consensus 196 ADIvI~Avgk~~lv~-------~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFIT-------PDMVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccC-------HHHcCCCcEEEEeecc
Confidence 999999997322122 2236899998875543
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.13 Score=52.59 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=49.2
Q ss_pred cceEEEEcCCCCc-HHHHHHHHHCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 308 VRKVAVIGGGLMG-SGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG-~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
+.||||||+|.++ ...+..+.+.+. -|-++|+++++++...+.. +.-...+++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~----------------------~~~~~~~~~~ 60 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF----------------------GIAKAYTDLE 60 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc----------------------CCCcccCCHH
Confidence 4589999998554 567778877653 4667799999987765432 111234455
Q ss_pred cCCC--CcCEEEEcccCChhH
Q 009256 383 SEFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 383 ~~~~--~aDlVi~avpe~~~~ 401 (539)
+.++ +.|+|++++|.+...
T Consensus 61 ~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 61 ELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred HHhcCCCCCEEEEcCCChhhH
Confidence 3343 379999999977764
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.17 Score=53.14 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC------eEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI------YVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~------~V~~~d~~~~ 342 (539)
||.|||+|-+|..+++.|+..|+ +++++|.+.-
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNI 39 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCc
Confidence 58999999999999999999998 8999997744
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.15 Score=55.01 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCCCcCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 296 PNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 296 ~~~~~~~~~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|+...++.. ..-++|.|||+|..|.++|..|.+.|++|+++|.++.
T Consensus 5 ~~~~~~~~~-~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 5 PGLTSWHSD-WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred cchhhcccC-cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 344445543 2346899999999999999999999999999997653
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.1 Score=43.73 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=61.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CC----
Q 009256 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LD---- 381 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~---- 381 (539)
.+|.-||+|. +.++..+++ .|.+|+.+|.+++.++.+.+.... .+.- .++++. .+
T Consensus 3 ~~vLDlGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~ 64 (112)
T PF12847_consen 3 GRVLDLGCGT--GRLSIALARLFPGARVVGVDISPEMLEIARERAAE-------EGLS---------DRITFVQGDAEFD 64 (112)
T ss_dssp CEEEEETTTT--SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-------TTTT---------TTEEEEESCCHGG
T ss_pred CEEEEEcCcC--CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-------cCCC---------CCeEEEECccccC
Confidence 3788999998 445555555 899999999999999988765411 1100 122211 11
Q ss_pred ccCCCCcCEEEEcc-c----CChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 382 YSEFKDVDMVIEAV-I----ESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 382 ~~~~~~aDlVi~av-p----e~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
.+.....|+|+... . ...+..+.+++++.+.++|+..++.
T Consensus 65 ~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 65 PDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp TTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 13445789999766 1 1124466778889999998876653
|
... |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.098 Score=52.25 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=33.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH---HHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE---YLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~---~~~~~~ 348 (539)
+++.|+|+|-.+.+++..++..|. +|++++|+++ +++.+.
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la 168 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFA 168 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHH
Confidence 479999999999999999999886 8999999964 444443
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.18 Score=48.60 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (539)
.+|.|+|+|-+|+.++..|++.|. +++++|.+.-
T Consensus 12 ~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V 46 (231)
T cd00755 12 AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV 46 (231)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence 379999999999999999999998 9999997753
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.17 Score=48.73 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|.+|+.+|..|+..|+ +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 379999999999999999999998 899997664
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.22 Score=51.81 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (539)
+|.|||+|-.|+.++..|+..|. +++++|.+
T Consensus 137 ~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 79999999999999999999998 89999988
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.092 Score=56.49 Aligned_cols=37 Identities=30% Similarity=0.283 Sum_probs=33.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
..++|.|+|+|..|.++|..|.+.|++|+++|+++..
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~ 50 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETA 50 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 4468999999999999999999999999999987653
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.13 Score=49.08 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
++|+|.|.|++|..+|..|.+.|. .|.+.|.+.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 489999999999999999999988 566778887
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.11 Score=53.28 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=57.4
Q ss_pred eEEEEcC-CCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc-cC
Q 009256 310 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-SE 384 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~ 384 (539)
||+|||+ |.+|..+...|.++ +++++ +++.+...-+...+.. .. +. +.. ...+. .+. +.
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~----~~-l~-~~~----------~~~~~~~~~~~~ 65 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVH----PH-LR-GLV----------DLNLEPIDEEEI 65 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhC----cc-cc-ccC----------CceeecCCHHHh
Confidence 7999998 99999999999976 66887 5565543222211100 00 00 000 01111 122 22
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+.++|+||.|+|.... .++..++. ..++.|+++++.....
T Consensus 66 ~~~~DvVf~alP~~~s--~~~~~~~~---~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 66 AEDADVVFLALPHGVS--AELAPELL---AAGVKVIDLSADFRLK 105 (346)
T ss_pred hcCCCEEEECCCchHH--HHHHHHHH---hCCCEEEeCChhhhcC
Confidence 3589999999995543 34433332 4578888888876544
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.25 Score=49.18 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=66.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc--
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY-- 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~-- 382 (539)
.++|..||.|..|.+-...++.. +-.++.+|++++.++.+++.+.. ..+ +. .++++. .|.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~------~~g-L~--------~rV~F~~~Da~~ 188 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS------DPD-LS--------KRMFFHTADVMD 188 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh------ccC-cc--------CCcEEEECchhh
Confidence 36899999999877654444333 34799999999999988664321 011 00 223321 111
Q ss_pred --cCCCCcCEEEEcccC--ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 383 --SEFKDVDMVIEAVIE--SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 383 --~~~~~aDlVi~avpe--~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
....+.|+|+..+-- +..-++.+++.+.+.++||.+++.-+
T Consensus 189 ~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 189 VTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 235689999987522 23567899999999999998877544
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.16 Score=50.25 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=52.5
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+. .|.+++..|.+.|..|++++..-..+. +.+++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~-------------------------------------~~~~~ 207 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLK-------------------------------------KYTLD 207 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHH-------------------------------------HHHhh
Confidence 4899999877 899999999999999999984321111 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.++.-.--+. .+.+++++++++..+.
T Consensus 208 ADIvv~AvG~p~~i~-------~~~vk~gavVIDvGin 238 (287)
T PRK14176 208 ADILVVATGVKHLIK-------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred CCEEEEccCCccccC-------HHHcCCCcEEEEeccc
Confidence 999998774222111 2367899998875543
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.36 Score=52.08 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=102.7
Q ss_pred cCcEEEEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-.-|.=|+|.. -+++++-.....+.++.++.. ++-+|.|.-. +.|..|-+-+ .........++
T Consensus 292 ~G~pVGiian~~~~~~G~~~~~~a~K~arfi~lcd~~-~iPlv~l~dt-pGf~~g~~~E----------~~g~~~~ga~~ 359 (493)
T PF01039_consen 292 GGRPVGIIANNPRQRAGALDPDGARKAARFIRLCDAF-NIPLVTLVDT-PGFMPGPEAE----------RAGIIRAGARL 359 (493)
T ss_dssp TTEEEEEEEE-TTCGGGEB-HHHHHHHHHHHHHHHHT-T--EEEEEEE-CEB--SHHHH----------HTTHHHHHHHH
T ss_pred CCcceEEEEeccccccccCChHHHHHHHHHHHHHHhh-CCceEEEeec-ccccccchhh----------hcchHHHHHHH
Confidence 34333344466653 379999999999999998874 5667777532 3465554322 11223445566
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhcc----CEEEeeCCceEeCCcccCCCCCCcchhhcccccc-------CH-H
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGC----HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-------GL-S 157 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v-------G~-~ 157 (539)
+ .++.+++.|+|..|-|.++|||..-.... |+++|.++++++ ++++-+....+.+.- |. .
T Consensus 360 ~-~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~-------vm~~e~a~~i~~~~~~~~~~~~~~~~ 431 (493)
T PF01039_consen 360 L-YALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIG-------VMGPEGAASILYRDELEAAEAEGADP 431 (493)
T ss_dssp H-HHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEE-------SS-HHHHHHHHTHHHHHHSCHCCHSH
T ss_pred H-HHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceee-------ecChhhhheeeehhhhhhhhcccchh
Confidence 6 78999999999999999999887555555 788777777766 444444433322210 00 0
Q ss_pred H--HHHHHH--cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 009256 158 K--AIEMML--LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 158 ~--a~~l~l--~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
. ..+.+- .-+..++..+.+.|++|.|+++.+..........-+.+.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~~ 482 (493)
T PF01039_consen 432 EAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQKP 482 (493)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhCc
Confidence 0 111111 1122588999999999999999998887777666555543
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.041 Score=57.25 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=33.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
|++|.|||+|.-|...|..|+++|++|+++|++++.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 568999999999999999999999999999988653
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.042 Score=56.62 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|-+|+.++..|+..|+ +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 379999999999999999999998 899999875
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.078 Score=53.76 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=31.9
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
||.|+|+ |.+|+.++..|.++||+|++++|+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 7999995 9999999999999999999999997653
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.11 Score=50.86 Aligned_cols=73 Identities=21% Similarity=0.245 Sum_probs=52.6
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.+.+ |.+|+..|.+.++.|+++...-..+. +.++.
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~-------------------------------------~~~k~ 199 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLA-------------------------------------SITKN 199 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHH-------------------------------------HHhhh
Confidence 47999998665 99999999999999999875431111 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.++.-.- ++. .+.+++++++++....
T Consensus 200 ADIvv~AvG~p~-----~i~--~d~vk~gavVIDVGin 230 (283)
T COG0190 200 ADIVVVAVGKPH-----FIK--ADMVKPGAVVIDVGIN 230 (283)
T ss_pred CCEEEEecCCcc-----ccc--cccccCCCEEEecCCc
Confidence 999999985222 222 3567888888865543
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.14 Score=49.56 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=54.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-----------CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc-
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-----------IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML- 376 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-----------~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i- 376 (539)
.+|.|||+|-.|+.++..|++.| .+++++|.+.-....+..++ -...+-|....+.....+..+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl----f~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA----FYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc----CChhHCCcHHHHHHHHHHHhcc
Confidence 48999999999999999999864 28999997743332222111 001112221111112222211
Q ss_pred ----cccC----CccCCCCcCEEEEcccCChhHHHHHHHHHHH
Q 009256 377 ----KGVL----DYSEFKDVDMVIEAVIESVPLKQKIFSELEK 411 (539)
Q Consensus 377 ----~~~~----~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~ 411 (539)
.... ..+.+.++|+||.|+ ++...+..+.+....
T Consensus 88 ~~~i~a~~~~~~~~~~~~~~DiVi~av-Dn~~aR~~l~~~~~~ 129 (244)
T TIGR03736 88 GTDWTAHPERVERSSTLHRPDIVIGCV-DNRAARLAILRAFEG 129 (244)
T ss_pred CceEEEEEeeeCchhhhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence 1100 012256799999998 466666666555544
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.051 Score=41.49 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=26.7
Q ss_pred EEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 313 VIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 313 iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|||+|.-|.+.|..|.++|++|++++++.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 79999999999999999999999999885
|
... |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.027 Score=55.83 Aligned_cols=32 Identities=16% Similarity=0.352 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
||.|||+|.+|+.+|+.|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999997 888888653
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.052 Score=57.17 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=31.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
+|.|||+|.+|.++|..|+++|++|+++|+++.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 799999999999999999999999999999754
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.12 Score=51.06 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=53.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||- ...|.+++..|.++|..|++++.....++ +.+++
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~-------------------------------------~~~~~ 202 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLP-------------------------------------SIVRQ 202 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHH-------------------------------------HHHhh
Confidence 48999996 66699999999999999999874321111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.++.-.- ++. .+++++++++++....
T Consensus 203 ADIvIsAvGk~~-----~i~--~~~ik~gavVIDvGin 233 (284)
T PRK14177 203 ADIIVGAVGKPE-----FIK--ADWISEGAVLLDAGYN 233 (284)
T ss_pred CCEEEEeCCCcC-----ccC--HHHcCCCCEEEEecCc
Confidence 999999986322 222 3467899998876543
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.31 Score=48.69 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=53.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHHhhcccccCCccCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 385 (539)
-||+|||+|.+|......+.+. +.++. ++|++++....... .+.|.-. ....+..+. ...+
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A---------~~~Gi~~~~~~ie~LL~-------~~~~ 68 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA---------RRLGVATSAEGIDGLLA-------MPEF 68 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH---------HHcCCCcccCCHHHHHh-------CcCC
Confidence 3799999999999987777754 56665 67898864321111 1112100 001111100 0124
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+.|+|+++.|.... .+.... ....++.++++++.
T Consensus 69 ~dIDiVf~AT~a~~H--~e~a~~---a~eaGk~VID~sPA 103 (302)
T PRK08300 69 DDIDIVFDATSAGAH--VRHAAK---LREAGIRAIDLTPA 103 (302)
T ss_pred CCCCEEEECCCHHHH--HHHHHH---HHHcCCeEEECCcc
Confidence 679999999985443 233222 34467777776653
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.7 Score=43.99 Aligned_cols=101 Identities=17% Similarity=0.055 Sum_probs=59.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhH-hcCCCCHHHHHHHhhcccc-cCCccC---
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV-TRGKLTQDKANNALKMLKG-VLDYSE--- 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~i~~-~~~~~~--- 384 (539)
+|-++|+|. +.-|..|+++|++|+.+|+++..++.+.+.. .+.... ..+..... .-.++++ ..|...
T Consensus 37 rvLd~GCG~--G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~--~~~~~~~~~~~~~~~----~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 37 RVFVPLCGK--SLDLAWLAEQGHRVLGVELSEIAVEQFFAEN--GLTPTVTQQGEFTRY----RAGNIEIFCGDFFALTA 108 (213)
T ss_pred eEEEeCCCc--hhHHHHHHhCCCeEEEEeCCHHHHHHHHHHc--CCCcceeccccceee----ecCceEEEEccCCCCCc
Confidence 799999998 7888889999999999999999988753210 000000 00000000 0011221 112211
Q ss_pred --CCCcCEEEEcc---cCChhHHHHHHHHHHHhCCCCeE
Q 009256 385 --FKDVDMVIEAV---IESVPLKQKIFSELEKACPPHCI 418 (539)
Q Consensus 385 --~~~aDlVi~av---pe~~~~~~~~~~~l~~~~~~~~i 418 (539)
...-|.|+++. .-.++.....++.+.+.++|+..
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 22358787643 11355677788999999999863
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.16 Score=52.58 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
+|.|||+|-+|+.++..|+..|. +++++|.+.
T Consensus 43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 79999999999999999999997 999999873
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.17 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN 330 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~ 330 (539)
-+|+|+|+|.||..++..+.+.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 3799999999999999998765
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.15 Score=49.76 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (539)
.+|.|||+|.+|+.++..|+..|. +++++|.+.-
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 379999999999999999999997 8999987643
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.11 Score=52.98 Aligned_cols=41 Identities=24% Similarity=0.225 Sum_probs=34.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-C-CeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+ |.||+.++++|+.+ | .+|++++|+++++..+.+
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~ 199 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQA 199 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHH
Confidence 47999998 89999999999864 5 599999999887766543
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.15 Score=49.32 Aligned_cols=41 Identities=27% Similarity=0.296 Sum_probs=35.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|.|+ |.+|..++..|++.|++|++.+++++..+...+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~ 48 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAK 48 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888886 999999999999999999999999876655543
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.18 Score=49.67 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (539)
+|.|||+|.+|+.+|..|++.|. +++++|.+.-
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 79999999999999999999994 8999998743
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.23 Score=49.23 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=31.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLL 345 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~ 345 (539)
+|.|||+|-+|+.++..|+..|. +++++|.+.-...
T Consensus 29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~S 65 (287)
T PRK08223 29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELR 65 (287)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchh
Confidence 79999999999999999999998 8999998754433
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.19 Score=48.25 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEE-EEeC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEV 339 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~-~~d~ 339 (539)
++|+|.|.|.+|..++..|.+.|..|+ +.|.
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 589999999999999999999999998 6677
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.22 Score=50.09 Aligned_cols=147 Identities=21% Similarity=0.227 Sum_probs=81.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCe---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIY---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~---V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.+|||+|+ |..|..|...|.+..++ +.++-.....-++. .+-+.-+ ..-.....+...
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-----------~~f~~~~-------~~v~~~~~~~~~ 63 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-----------IEFGGKS-------IGVPEDAADEFV 63 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-----------ccccCcc-------ccCccccccccc
Confidence 48999986 99999999999996553 34443222211110 1100000 000111123356
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCC----Ceeeeec
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM----PLLEIVR 460 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~----~~vei~~ 460 (539)
.+++|+++-|.+.+.. +.+..++. ..|+++++|+|...+..=.. +-+...||-+.. +...+..
T Consensus 64 ~~~~Divf~~ag~~~s--~~~~p~~~---~~G~~VIdnsSa~Rm~~DVP--------LVVPeVN~~~l~~~~~rg~Iian 130 (334)
T COG0136 64 FSDVDIVFFAAGGSVS--KEVEPKAA---EAGCVVIDNSSAFRMDPDVP--------LVVPEVNPEHLIDYQKRGFIIAN 130 (334)
T ss_pred cccCCEEEEeCchHHH--HHHHHHHH---HcCCEEEeCCcccccCCCCC--------EecCCcCHHHHHhhhhCCCEEEC
Confidence 7799999999985554 44444443 46799999999876652111 111112221111 0112334
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
...+.....-.+.+|++..+-+-+.+
T Consensus 131 pNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 131 PNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred CChHHHHHHHHHHHHHhhcCceEEEE
Confidence 44456677788899999888555544
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.67 Score=44.26 Aligned_cols=101 Identities=15% Similarity=0.090 Sum_probs=60.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhh-HhcCCCCHHHHHHHhhcccc-cCCc----
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL-VTRGKLTQDKANNALKMLKG-VLDY---- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~i~~-~~~~---- 382 (539)
.+|-++|+|. +.-+..|+++|++|+.+|.++..++.+..+. .+... ...+... . ..-.++++ ..|.
T Consensus 39 ~rvL~~gCG~--G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~--~l~~~~~~~~~~~---~-~~~~~v~~~~~D~~~l~ 110 (218)
T PRK13255 39 SRVLVPLCGK--SLDMLWLAEQGHEVLGVELSELAVEQFFAEN--GLTPQTRQSGEFE---H-YQAGEITIYCGDFFALT 110 (218)
T ss_pred CeEEEeCCCC--hHhHHHHHhCCCeEEEEccCHHHHHHHHHHc--CCCcccccccccc---c-cccCceEEEECcccCCC
Confidence 3799999998 6788889999999999999999988763210 00000 0000000 0 00011221 1111
Q ss_pred -cCCCCcCEEEEcc---cCChhHHHHHHHHHHHhCCCCe
Q 009256 383 -SEFKDVDMVIEAV---IESVPLKQKIFSELEKACPPHC 417 (539)
Q Consensus 383 -~~~~~aDlVi~av---pe~~~~~~~~~~~l~~~~~~~~ 417 (539)
+.....|+|++.. .-.++.....++.+.+.++|+.
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG 149 (218)
T PRK13255 111 AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGC 149 (218)
T ss_pred cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCC
Confidence 1223458888543 1136667888899999999985
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.12 Score=50.47 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=36.1
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
|+++.|+|+ |.+|..++..|++.|++|++++++++.++.+.+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 357889985 899999999999999999999999887766544
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.2 Score=49.40 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=35.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|.|+ |.+|..++..|+++|++|++.+++++.++...+
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 47888886 889999999999999999999999988766544
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.16 Score=49.41 Aligned_cols=43 Identities=26% Similarity=0.166 Sum_probs=36.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|.|+ |.+|..+|..|++.|++|++.+++++..+...+.+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 46888875 89999999999999999999999988766654443
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.19 Score=50.45 Aligned_cols=39 Identities=26% Similarity=0.199 Sum_probs=34.5
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
..++|.|-|+ |.+|+-+...|+.+||.|..--|+++..+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k 44 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEK 44 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhh
Confidence 3468999996 99999999999999999999999988733
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.18 Score=52.46 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=32.6
Q ss_pred cceEEEE----cC-CCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 308 VRKVAVI----GG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iI----G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
.++|.|+ |+ |.+|..++..|+++||+|++++|+++.
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 4689999 75 999999999999999999999998765
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.3 Score=48.36 Aligned_cols=73 Identities=16% Similarity=0.214 Sum_probs=52.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||- ..+|.++|..|.++|..|++++.....++ +.++.
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~l~-------------------------------------~~~~~ 201 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLA-------------------------------------ELTKQ 201 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchhHH-------------------------------------HHHHh
Confidence 48999995 66799999999999999999864422111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.++.-.--+. .+.+++++++++....
T Consensus 202 ADIvI~AvG~p~~i~-------~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 202 ADILIVAVGKPKLIT-------ADMVKEGAVVIDVGVN 232 (284)
T ss_pred CCEEEEecCCCCcCC-------HHHcCCCCEEEEeecc
Confidence 999999986322222 2456899998875533
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.19 Score=49.17 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=36.6
Q ss_pred ceEEEEcC-C-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
+++.|.|+ | -+|..++..|++.|++|++.+++++.++...+.+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~ 62 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL 62 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 57889997 6 5999999999999999999999988777665544
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.071 Score=54.37 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
.|.|||+|..|.++|..|++.|++|+++|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4899999999999999999999999999988
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.17 Score=49.10 Aligned_cols=39 Identities=23% Similarity=0.151 Sum_probs=34.1
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
+|.|+|+ |.+|..++..|++.|++|++++++++.++...
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 6888985 88999999999999999999999988766543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.81 Score=44.88 Aligned_cols=99 Identities=11% Similarity=0.082 Sum_probs=64.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC-C
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE-F 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~ 385 (539)
.++|-|||+|- ++.++-++++.-+|+++|+|++.++.+++.+-. +....+. .+++..... +. -
T Consensus 73 pk~VLIiGGGD--Gg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~-~~~~~~D------------pRv~l~~~~~~~~~ 137 (262)
T PRK00536 73 LKEVLIVDGFD--LELAHQLFKYDTHVDFVQADEKILDSFISFFPH-FHEVKNN------------KNFTHAKQLLDLDI 137 (262)
T ss_pred CCeEEEEcCCc--hHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHH-HHHhhcC------------CCEEEeehhhhccC
Confidence 36899999999 667888888766999999999999888764322 1111111 122222222 21 2
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+.-|+||.=...+ .+.++.+.+.++++.++++.+.+
T Consensus 138 ~~fDVIIvDs~~~----~~fy~~~~~~L~~~Gi~v~Qs~s 173 (262)
T PRK00536 138 KKYDLIICLQEPD----IHKIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_pred CcCCEEEEcCCCC----hHHHHHHHHhcCCCcEEEECCCC
Confidence 4679888653322 35667788889999888865543
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.22 Score=50.07 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=30.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEY 343 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~ 343 (539)
||.|||+|.+|..+++.|+..|+ +++++|.+.-.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve 35 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTID 35 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcc
Confidence 58999999999999999999997 89999976543
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.15 Score=55.00 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=31.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
++|.|+|+|..|.+.+..|...|++|+++|.+++.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~ 47 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDA 47 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 58999999999999999999999999999987654
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.3 Score=45.56 Aligned_cols=176 Identities=12% Similarity=0.086 Sum_probs=94.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc---ccCCc-
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK---GVLDY- 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~- 382 (539)
|++|-|+|.|..+-.+|..|.+.+. +|=++.|...+.+...+.+.+.- ..++-. ..-+.-....+... +..++
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~-~~~~v~-vqn~~h~~l~G~~~id~~~~~~~ 78 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSD-GLFEVS-VQNEQHQALSGECTIDHVFQDYE 78 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCC-CEEEEe-ecchhhhhhcCeEEhhHhhcCHH
Confidence 5689999999999999999988765 79899997777666655432210 000000 00000011112222 12234
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhC--CCCe-EEEecC--CCCChHHHhhccCCCCcEEEec-------cCCC-
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKAC--PPHC-ILATNT--STIDLNIVGEKTSSQDRIIGAH-------FFSP- 449 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~--~~~~-ii~s~t--s~~~~~~i~~~~~~~~r~vg~h-------~~~p- 449 (539)
+...+=|.+|.|+|.|. -..++++|.... .-.+ +++|.+ |...+..+.........++... |.++
T Consensus 79 ~i~g~WdtlILavtaDA--Y~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 79 EIEGEWDTLILAVTADA--YLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred HhcccccEEEEEechHH--HHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 33456799999999665 457776653321 1233 444433 2333443333333222344332 1221
Q ss_pred -CCC-C-Cee---eeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 450 -AHV-M-PLL---EIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 450 -~~~-~-~~v---ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
++. . ..+ .-++....+...++++..+++.+|-..+.+.
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~~~~~~ 200 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQLEVMD 200 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCeEEEeC
Confidence 110 0 000 1223335567788999999999998888774
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.24 Score=50.13 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=35.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|.|+ |.+|..++..|++.|++|++.+|+++..+...+.
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 46888886 8899999999999999999999998877665444
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.074 Score=55.55 Aligned_cols=35 Identities=26% Similarity=0.092 Sum_probs=32.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
..+|.|||+|.-|...|..|+++|++|+++++++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999998864
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.28 Score=49.35 Aligned_cols=87 Identities=23% Similarity=0.226 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+++.|.|.|..|..+|..+...|-+|.+++.+|-.+-++ .++.+.+..-.++...+
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA------------------------~MdGf~V~~m~~Aa~~g 265 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEA------------------------AMDGFRVMTMEEAAKTG 265 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHH------------------------hhcCcEEEEhHHhhhcC
Confidence 467888999999999999999999999999998653332 11334444333778889
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
|++|.+....--+..+ -...+++++|++ |..
T Consensus 266 DifiT~TGnkdVi~~e----h~~~MkDgaIl~-N~G 296 (420)
T COG0499 266 DIFVTATGNKDVIRKE----HFEKMKDGAILA-NAG 296 (420)
T ss_pred CEEEEccCCcCccCHH----HHHhccCCeEEe-ccc
Confidence 9999988754433333 334567888775 443
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.062 Score=54.74 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+|.|||+|.-|..+|..|+++|++|+++|+++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 6999999999999999999999999999997653
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.15 Score=52.07 Aligned_cols=143 Identities=19% Similarity=0.164 Sum_probs=75.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeE---EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Ccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYV---VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS 383 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V---~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 383 (539)
.||+|||+ |..|..+.+.|.++||++ ..+.++.+.-+... . .+ ..+...+ +..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----------~-~g-----------~~i~v~d~~~~ 59 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----------F-KG-----------KELKVEDLTTF 59 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----------e-CC-----------ceeEEeeCCHH
Confidence 58999996 999999999999988864 55654433211110 0 00 0111111 113
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCe--eeeecC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPL--LEIVRT 461 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~--vei~~~ 461 (539)
.+.++|+||.|+|.. .-+++..++ +..++.|++.++...... . .| .++.-.++..+... -.++..
T Consensus 60 ~~~~vDvVf~A~g~g--~s~~~~~~~---~~~G~~VIDlS~~~R~~~-~----~p---~~lpevn~~~i~~~~~~~iVan 126 (334)
T PRK14874 60 DFSGVDIALFSAGGS--VSKKYAPKA---AAAGAVVIDNSSAFRMDP-D----VP---LVVPEVNPEALAEHRKKGIIAN 126 (334)
T ss_pred HHcCCCEEEECCChH--HHHHHHHHH---HhCCCEEEECCchhhcCC-C----CC---eEcCCcCHHHHhhhhcCCeEEC
Confidence 457899999999843 333444433 345777888777654332 0 11 13322232221111 025555
Q ss_pred CCCcHHH-HHHHHHHHHHcCceeEEE
Q 009256 462 ERTSAQV-ILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 462 ~~t~~e~-~~~~~~l~~~lg~~~v~v 486 (539)
+.+.... .-.+.+|.+..+-..+.+
T Consensus 127 p~C~~t~~~l~l~pL~~~~~i~~i~v 152 (334)
T PRK14874 127 PNCSTIQMVVALKPLHDAAGIKRVVV 152 (334)
T ss_pred ccHHHHHHHHHHHHHHHhcCceEEEE
Confidence 5555444 334566666666544443
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.22 Score=48.67 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=36.1
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
+|.|.|+ |.+|.+++..|++.|++|++.+++++.++...+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l 44 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL 44 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 6888885 88999999999999999999999998877665544
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.26 Score=48.64 Aligned_cols=72 Identities=21% Similarity=0.265 Sum_probs=51.6
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+ ..|.++|..|.++|..|+++......+. +.++.
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~-------------------------------------~~~~~ 200 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLK-------------------------------------AHTKK 200 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHH-------------------------------------HHHhh
Confidence 489999987 7799999999999999998753211111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
||+||.++.-.- ++. .+.+++++++++...
T Consensus 201 ADIvV~AvGkp~-----~i~--~~~vk~gavvIDvGi 230 (281)
T PRK14183 201 ADIVIVGVGKPN-----LIT--EDMVKEGAIVIDIGI 230 (281)
T ss_pred CCEEEEecCccc-----ccC--HHHcCCCcEEEEeec
Confidence 999999996222 222 246789998886553
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.19 Score=48.99 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=35.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+ |.+|..++..|+++|++|+++++++...+...+
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 57899987 999999999999999999999999876655433
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=93.18 E-value=1 Score=43.03 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=34.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|.|+ |.+|..++..|+++|++|++++++++..+...
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~ 46 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALA 46 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHH
Confidence 57999985 99999999999999999999999987765543
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.16 E-value=2.1 Score=41.71 Aligned_cols=179 Identities=17% Similarity=0.189 Sum_probs=99.7
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
..-||+|+|+ |-+|.++...|..+-. ++.+||+.... .... +.+.++.. ...........+
T Consensus 27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~--GVaa----------DlSHI~T~---s~V~g~~g~~~L~ 91 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTP--GVAA----------DLSHINTN---SSVVGFTGADGLE 91 (345)
T ss_pred CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCC--cccc----------cccccCCC---CceeccCChhHHH
Confidence 3458999995 9999999998876543 78899987321 0000 01111100 000011112233
Q ss_pred cCCCCcCEEEEcc--cC------------ChhHHHHHHHHHHHhCCCCeE-EEecC--CCCChH-HHhhc--cCCCCcEE
Q 009256 383 SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCI-LATNT--STIDLN-IVGEK--TSSQDRII 442 (539)
Q Consensus 383 ~~~~~aDlVi~av--pe------------~~~~~~~~~~~l~~~~~~~~i-i~s~t--s~~~~~-~i~~~--~~~~~r~v 442 (539)
++++++|+||+-. |- +..+.+.+...+.+.++.-.+ ++||. |++|+. ++... ...|.++.
T Consensus 92 ~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklf 171 (345)
T KOG1494|consen 92 NALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLF 171 (345)
T ss_pred HHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCcccee
Confidence 6789999999653 32 334555555667777765443 33443 344543 33222 33566777
Q ss_pred Eecc---------------CCCCCCCCeeeeecC----------------CCCcHHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 443 GAHF---------------FSPAHVMPLLEIVRT----------------ERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 443 g~h~---------------~~p~~~~~~vei~~~----------------~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
|.-- .+| ....-+-+++| -..+++.++.+..-.+.-|-+++..+.+.|
T Consensus 172 GVTtLDvVRA~tFv~~~~~~~p-~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaG 250 (345)
T KOG1494|consen 172 GVTTLDVVRANTFVAEVLNLDP-AEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAG 250 (345)
T ss_pred ceehhhhhhHHHHHHHHhCCCc-hhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCC
Confidence 7642 122 11011112222 123667777777777888888888888888
Q ss_pred chhhcchHHH
Q 009256 492 FAVNRAFFPY 501 (539)
Q Consensus 492 ~v~nrl~~~~ 501 (539)
.....|-++-
T Consensus 251 SATLSMAyAg 260 (345)
T KOG1494|consen 251 SATLSMAYAG 260 (345)
T ss_pred chhhhHHHHH
Confidence 8777775543
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.16 Score=49.51 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=35.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
+++.|.|+ |.+|..++..|++.|++|++++++++..+...+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 36888886 899999999999999999999999887766544
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.36 Score=51.68 Aligned_cols=34 Identities=26% Similarity=0.239 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
++|+|+|.|.-|.++|..|.+.|++|+++|.++.
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4899999999999999999999999999998753
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.18 Score=48.94 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~ 344 (539)
.+|.|+|+|-+|+.++..|+..|. +++++|.+.-..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 479999999999999999999997 899999875443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.075 Score=55.57 Aligned_cols=34 Identities=35% Similarity=0.419 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
.+|.|||+|..|..+|..|++.|++|+++|++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 4799999999999999999999999999998865
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 539 | ||||
| 2wtb_A | 725 | Arabidopsis Thaliana Multifuctional Protein, Mfp2 L | 1e-179 | ||
| 2x58_A | 727 | The Crystal Structure Of Mfe1 Liganded With Coa Len | 1e-65 | ||
| 3zw8_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 1e-65 | ||
| 3zwb_A | 742 | Crystal Structure Of Rat Peroxisomal Multifunctiona | 8e-65 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 1e-55 | ||
| 3mog_A | 483 | Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydroge | 4e-33 | ||
| 1zcj_A | 463 | Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenas | 2e-31 | ||
| 3pea_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 4e-29 | ||
| 3had_A | 308 | Biochemical Characterization And Structure Determin | 1e-27 | ||
| 1f0y_A | 302 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Ac | 2e-27 | ||
| 3k6j_A | 460 | Crystal Structure Of The Dehydrogenase Part Of Mult | 2e-27 | ||
| 1f12_A | 310 | L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- | 3e-27 | ||
| 1lso_A | 302 | Crystal Structure Of The S137a Mutant Of L-3-Hydrox | 4e-27 | ||
| 1lsj_A | 302 | Crystal Structure Of The E110q Mutant Of L-3-hydrox | 4e-27 | ||
| 1il0_A | 302 | X-Ray Crystal Structure Of The E170q Mutant Of Huma | 4e-27 | ||
| 3hdh_A | 302 | Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydroge | 5e-27 | ||
| 1m76_A | 302 | Crystal Structure Of The S137c Mutant Of L-3-Hydrox | 7e-27 | ||
| 1m75_A | 302 | Crystal Structure Of The N208s Mutant Of L-3-Hydrox | 8e-27 | ||
| 2hdh_A | 293 | Biochemical Characterization And Structure Determin | 8e-20 | ||
| 3rqs_A | 324 | Crystal Structure Of Human L-3- Hydroxyacyl-Coa Deh | 1e-19 | ||
| 3moy_A | 263 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 9e-18 | ||
| 4fzw_A | 258 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 1e-15 | ||
| 3h81_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 3e-15 | ||
| 3pzk_A | 257 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-15 | ||
| 3q0j_A | 258 | Crystal Structure Of The Mycobacterium Tuberculosis | 3e-15 | ||
| 1mj3_A | 260 | Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata | 7e-15 | ||
| 1ey3_A | 258 | Structure Of Enoyl-Coa Hydratase Complexed With The | 7e-15 | ||
| 1dub_A | 261 | 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph | 8e-15 | ||
| 2pbp_A | 258 | Crystal Structure Of Enoyl-Coa Hydrates Subunit I ( | 1e-14 | ||
| 3hrx_A | 254 | Crystal Structure Of Phenylacetic Acid Degradation | 1e-14 | ||
| 3kqf_A | 265 | 1.8 Angstrom Resolution Crystal Structure Of Enoyl- | 4e-14 | ||
| 2hw5_A | 286 | The Crystal Structure Of Human Enoyl-Coenzyme A (Co | 6e-14 | ||
| 4dyd_A | 283 | Substrate-Directed Dual Catalysis Of Dicarbonyl Com | 4e-13 | ||
| 2iex_A | 272 | Crystal Structure Of Dihydroxynapthoic Acid Synthet | 3e-12 | ||
| 1zej_A | 293 | Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrog | 3e-12 | ||
| 4di1_A | 277 | Crystal Structure Of Enoyl-Coa Hydratase Echa17 Fro | 4e-12 | ||
| 3hin_A | 275 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 3e-11 | ||
| 3qka_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase Echa5 From | 5e-11 | ||
| 2ppy_A | 265 | Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) F | 8e-11 | ||
| 3g64_A | 279 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 8e-11 | ||
| 1hzd_A | 272 | Crystal Structure Of Human Auh Protein, An Rna-Bind | 1e-10 | ||
| 3rsi_A | 265 | The Structure Of A Putative Enoyl-Coa HydrataseISOM | 1e-10 | ||
| 3t88_A | 289 | Crystal Structure Of Escherichia Coli Menb In Compl | 2e-10 | ||
| 4els_A | 285 | Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co | 2e-10 | ||
| 3trr_A | 256 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-10 | ||
| 3p85_A | 270 | Crystal Structure Enoyl-Coa Hydratase From Mycobact | 2e-09 | ||
| 3sll_A | 290 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-09 | ||
| 3h02_A | 288 | 2.15 Angstrom Resolution Crystal Structure Of Napht | 3e-09 | ||
| 3qre_A | 298 | Crystal Structure Of An Enoyl-Coa Hydratase Echa12_ | 4e-09 | ||
| 2uzf_A | 273 | Crystal Structure Of Staphylococcus Aureus 1,4-Dihy | 5e-09 | ||
| 3qyr_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M | 6e-09 | ||
| 1jxz_A | 269 | Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe | 9e-09 | ||
| 1nzy_A | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 1e-08 | ||
| 1nzy_B | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 2e-08 | ||
| 3qxz_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-08 | ||
| 4fzw_C | 274 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 4e-08 | ||
| 3pe8_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 5e-08 | ||
| 3p5m_A | 255 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 5e-08 | ||
| 2vx2_A | 287 | Crystal Structure Of Human Enoyl Coenzyme A Hydrata | 9e-08 | ||
| 3q1t_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 1e-07 | ||
| 3qk8_A | 272 | Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro | 2e-07 | ||
| 2ej5_A | 257 | Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr | 5e-07 | ||
| 4eml_A | 275 | Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy | 6e-07 | ||
| 4f47_A | 278 | The Structure Of Enoyl-Coa Hydratase Echa19 From My | 1e-06 | ||
| 3r0o_A | 273 | Crystal Structure Of Carnitinyl-Coa Hydratase From | 1e-06 | ||
| 3r9q_A | 262 | Structure Of A Probable Enoyl-Coa HydrataseISOMERAS | 2e-06 | ||
| 1sg4_A | 260 | Crystal Structure Of Human Mitochondrial Delta3-del | 4e-06 | ||
| 3isa_A | 254 | Crystal Structure Of Putative Enoyl-Coa HydrataseIS | 5e-06 | ||
| 4hc8_A | 255 | Crystal Structure Of Probable Enoyl-Coa Hydratase E | 5e-06 | ||
| 3r9t_A | 267 | Structure Of Echa1_1 From Mycobacterium Paratubercu | 6e-06 | ||
| 3swx_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 6e-06 | ||
| 3r9s_A | 267 | Structure Of A Carnitinyl-Coa Dehydratase From Myco | 8e-06 | ||
| 3qmj_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr | 1e-05 | ||
| 2vre_A | 296 | Crystal Structure Of Human Peroxisomal Delta3,5, De | 1e-05 | ||
| 1wz8_A | 264 | Crystal Structure Of Probable Enoyl-Coa Dehydratase | 2e-05 | ||
| 3lke_A | 263 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 3e-05 | ||
| 3l3s_A | 263 | Crystal Structure Of An Enoyl-Coa HydrotaseISOMERAS | 4e-05 | ||
| 2a7k_A | 250 | Carboxymethylproline Synthase (carb) From Pectobact | 7e-05 | ||
| 3he2_A | 264 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 8e-05 | ||
| 3f3s_A | 313 | The Crystal Structure Of Human Lambda-Crystallin, C | 8e-05 | ||
| 3r6h_A | 233 | Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) | 9e-05 | ||
| 1dci_A | 275 | Dienoyl-Coa Isomerase Length = 275 | 1e-04 | ||
| 3oc7_A | 267 | Crystal Structure Of An Enoyl-Coa Hydratase From My | 1e-04 | ||
| 1uiy_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase From Therm | 1e-04 | ||
| 3ome_A | 282 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 1e-04 | ||
| 3h0u_A | 289 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 2e-04 | ||
| 2fbm_A | 291 | Acetyltransferase Domain Of Cdy1 Length = 291 | 2e-04 | ||
| 1xx4_A | 261 | Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Co | 3e-04 | ||
| 1ef8_A | 261 | Crystal Structure Of Methylmalonyl Coa Decarboxylas | 3e-04 | ||
| 2fw2_A | 260 | Catalytic Domain Of Cdy Length = 260 | 3e-04 | ||
| 3i47_A | 268 | Crystal Structure Of Putative Enoyl Coa HydrataseIS | 3e-04 | ||
| 3bpt_A | 363 | Crystal Structure Of Human Beta-Hydroxyisobutyryl-C | 3e-04 | ||
| 2vsu_E | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 4e-04 | ||
| 2vss_F | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 4e-04 | ||
| 2j5i_I | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 4e-04 | ||
| 2vss_E | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 4e-04 | ||
| 2j5i_B | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 4e-04 | ||
| 2vsu_A | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 4e-04 | ||
| 2vsu_F | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 4e-04 | ||
| 2vsu_C | 275 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 4e-04 | ||
| 4hdt_A | 353 | Crystal Structure Of A Carnitinyl-Coa Dehydratase F | 4e-04 | ||
| 3gkb_A | 287 | Crystal Structure Of A Putative Enoyl-coa Hydratase | 5e-04 | ||
| 2j5i_A | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 6e-04 | ||
| 2f6q_A | 280 | The Crystal Structure Of Human Peroxisomal Delta3, | 6e-04 |
| >pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2 Length = 725 | Back alignment and structure |
|
| >pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa Length = 727 | Back alignment and structure |
|
| >pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) In Apo Form Length = 742 | Back alignment and structure |
|
| >pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional Enzyme Type 1 (rpmfe1) Complexed With 2trans-hexenoyl-coa Length = 742 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase From Escherichia Coli K12 Substr. Mg1655 Length = 483 | Back alignment and structure |
|
| >pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase Length = 463 | Back alignment and structure |
|
| >pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261 | Back alignment and structure |
|
| >pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 308 | Back alignment and structure |
|
| >pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa And Nad+ Length = 302 | Back alignment and structure |
|
| >pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of Multifuctional Enzyme 1 From C.Elegans Length = 460 | Back alignment and structure |
|
| >pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3- Hydroxybutyryl-Coa Length = 310 | Back alignment and structure |
|
| >pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl- Coa Dehydrogenase In Complex With Nad Length = 302 | Back alignment and structure |
|
| >pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3- Hydroxyacyl-Coa Dehydrogenase Length = 302 | Back alignment and structure |
|
| >pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Revisited: Sequence Analysis And Crystal Structure Determination Length = 302 | Back alignment and structure |
|
| >pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl- Coa Dehydrogenase In Complex With Nad And Acetoacetyl-Coa Length = 302 | Back alignment and structure |
|
| >pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination Of Human Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase Provide Insight Into Catalytic Mechanism Length = 293 | Back alignment and structure |
|
| >pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa Dehydrogenase (Ec1.1.1.35) From Mitochondria At The Resolution 2.0 A, Northeast Structural Genomics Consortium Target Hr487, Mitochondrial Protein Partnership Length = 324 | Back alignment and structure |
|
| >pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263 | Back alignment and structure |
|
| >pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258 | Back alignment and structure |
|
| >pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278 | Back alignment and structure |
|
| >pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257 | Back alignment and structure |
|
| >pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258 | Back alignment and structure |
|
| >pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260 | Back alignment and structure |
|
| >pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258 | Back alignment and structure |
|
| >pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261 | Back alignment and structure |
|
| >pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258 | Back alignment and structure |
|
| >pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254 | Back alignment and structure |
|
| >pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265 | Back alignment and structure |
|
| >pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286 | Back alignment and structure |
|
| >pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds By Diketoreductase Length = 283 | Back alignment and structure |
|
| >pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272 | Back alignment and structure |
|
| >pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase (Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At 2.00 A Resolution Length = 293 | Back alignment and structure |
|
| >pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From Mycobacterium Marinum Length = 277 | Back alignment and structure |
|
| >pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275 | Back alignment and structure |
|
| >pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261 | Back alignment and structure |
|
| >pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From Geobacillus Kaustophilus Hta426 Length = 265 | Back alignment and structure |
|
| >pdb|3G64|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Streptomyces Coelicolor A3(2) Length = 279 | Back alignment and structure |
|
| >pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase Length = 272 | Back alignment and structure |
|
| >pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 | Back alignment and structure |
|
| >pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289 | Back alignment and structure |
|
| >pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285 | Back alignment and structure |
|
| >pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256 | Back alignment and structure |
|
| >pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270 | Back alignment and structure |
|
| >pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290 | Back alignment and structure |
|
| >pdb|3H02|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of Naphthoate Synthase From Salmonella Typhimurium. Length = 288 | Back alignment and structure |
|
| >pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298 | Back alignment and structure |
|
| >pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus 1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In Complex With Acetoacetyl Coa Length = 273 | Back alignment and structure |
|
| >pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274 | Back alignment and structure |
|
| >pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256 | Back alignment and structure |
|
| >pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255 | Back alignment and structure |
|
| >pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287 | Back alignment and structure |
|
| >pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278 | Back alignment and structure |
|
| >pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272 | Back alignment and structure |
|
| >pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257 | Back alignment and structure |
|
| >pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275 | Back alignment and structure |
|
| >pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278 | Back alignment and structure |
|
| >pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273 | Back alignment and structure |
|
| >pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 262 | Back alignment and structure |
|
| >pdb|1SG4|A Chain A, Crystal Structure Of Human Mitochondrial Delta3-delta2- Enoyl-coa Isomerase Length = 260 | Back alignment and structure |
|
| >pdb|3ISA|A Chain A, Crystal Structure Of Putative Enoyl-Coa HydrataseISOMERASE FROM Bordetella Parapertussis Length = 254 | Back alignment and structure |
|
| >pdb|4HC8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase Echa3 (Rv0632c, Nysgrc-019494) From Mycobacterium Tuberculosis H37rv Length = 255 | Back alignment and structure |
|
| >pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267 | Back alignment and structure |
|
| >pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267 | Back alignment and structure |
|
| >pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256 | Back alignment and structure |
|
| >pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296 | Back alignment and structure |
|
| >pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From Thermus Thermophilus Hb8 Length = 264 | Back alignment and structure |
|
| >pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Halodurans Length = 263 | Back alignment and structure |
|
| >pdb|3L3S|A Chain A, Crystal Structure Of An Enoyl-Coa HydrotaseISOMERASE FAMILY Protein From Silicibacter Pomeroyi Length = 263 | Back alignment and structure |
|
| >pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250 | Back alignment and structure |
|
| >pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264 | Back alignment and structure |
|
| >pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1 Length = 313 | Back alignment and structure |
|
| >pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From Mycobacterium Marinum Length = 233 | Back alignment and structure |
|
| >pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275 | Back alignment and structure |
|
| >pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267 | Back alignment and structure |
|
| >pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253 | Back alignment and structure |
|
| >pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 282 | Back alignment and structure |
|
| >pdb|3H0U|A Chain A, Crystal Structure Of A Putative Enoyl-Coa Hydratase From Streptomyces Avermitilis Length = 289 | Back alignment and structure |
|
| >pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1 Length = 291 | Back alignment and structure |
|
| >pdb|1XX4|A Chain A, Crystal Structure Of Rat Mitochondrial 3,2-Enoyl-Coa Length = 261 | Back alignment and structure |
|
| >pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase Length = 261 | Back alignment and structure |
|
| >pdb|2FW2|A Chain A, Catalytic Domain Of Cdy Length = 260 | Back alignment and structure |
|
| >pdb|3I47|A Chain A, Crystal Structure Of Putative Enoyl Coa HydrataseISOMERASE (Crotonase) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 Length = 268 | Back alignment and structure |
|
| >pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363 | Back alignment and structure |
|
| >pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275 | Back alignment and structure |
|
| >pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353 | Back alignment and structure |
|
| >pdb|3GKB|A Chain A, Crystal Structure Of A Putative Enoyl-coa Hydratase From Streptomyces Avermitilis Length = 287 | Back alignment and structure |
|
| >pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 539 | |||
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 0.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 0.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 0.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 1e-118 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 1e-110 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 3e-70 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 1e-17 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 5e-67 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 4e-65 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 2e-64 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 3e-64 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 2e-63 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 2e-63 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 4e-63 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 4e-63 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 3e-61 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 8e-61 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 4e-60 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 7e-60 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 7e-60 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 9e-60 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 1e-59 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 2e-59 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 2e-59 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 2e-59 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 2e-59 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 4e-59 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 5e-59 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 1e-58 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 1e-58 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 1e-58 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 2e-58 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 2e-58 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 11251J, struct | 3e-58 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 3e-58 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 3e-58 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 4e-58 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 2e-57 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 2e-57 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 7e-57 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 7e-57 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 2e-56 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 3e-56 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 4e-56 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 5e-56 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 1e-55 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 1e-55 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 1e-55 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 1e-55 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 2e-55 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 2e-55 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 2e-55 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 4e-55 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 8e-55 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 1e-54 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 2e-54 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 9e-54 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 1e-53 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 2e-53 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 2e-53 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 2e-53 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 2e-53 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 3e-53 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 3e-53 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 4e-52 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 3e-51 | |
| 3t3w_A | 279 | Probable enoyl-COA hydratase; ssgcid, structural g | 4e-51 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 2e-50 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 3e-50 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 6e-50 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 2e-49 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 2e-48 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 2e-48 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 2e-46 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 2e-46 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 1e-09 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 2e-44 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 7e-44 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 1e-42 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 5e-22 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 2e-21 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-04 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 2e-04 |
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 673 bits (1740), Expect = 0.0
Identities = 331/534 (61%), Positives = 411/534 (76%), Gaps = 1/534 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
+ MEVG DGVA+ITLINPPVN+L+ ++ LK +EEA SR+DVKAIV+TG GR
Sbjct: 4 RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGR 63
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
FSGGFDI+ F ++ S++++ +L+E +KP VAA++GLALGGGLELAM
Sbjct: 64 FSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMA 123
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
CHARI+AP QLGLPEL LGVIPGFGGTQRLPRLVGL+KA+EM+L SK + +EEG LGL
Sbjct: 124 CHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEGHSLGL 183
Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239
IDAVV EL+ +R WALDI RRKPW+ S+ +TDKL L EARE+L A+ Q K AP
Sbjct: 184 IDAVVPPAELVTTARRWALDIVGRRKPWVSSVSKTDKLPPLGEAREILTFAKAQTLKRAP 243
Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
NM CLD IE GIV G +G+ KEA+V ++V LDT++GL+HVFF+QR T+KVP VT
Sbjct: 244 NMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVT 303
Query: 300 DIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLV 359
D GL PR ++KVA+IGGGLMGSGIATA IL+N V+LKEVN ++L GI ++AN++ V
Sbjct: 304 DRGLVPRKIKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRV 363
Query: 360 TRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCIL 419
+G ++Q+K + +LKG LDY F+DVDMVIEAVIE++ LKQ+IF++LEK CP HCIL
Sbjct: 364 RKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCIL 423
Query: 420 ATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKII 479
A+NTSTIDLN +GE+T SQDRI+GAHFFSPAH+MPLLEIVRT TSAQVI+DL+ VGK I
Sbjct: 424 ASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKI 483
Query: 480 KKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
KK PVVVGNCTGFAVNR FFPY+Q+A LV G D + ID AI FG+P+GPF+
Sbjct: 484 KKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFR 537
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 639 bits (1650), Expect = 0.0
Identities = 159/539 (29%), Positives = 261/539 (48%), Gaps = 8/539 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITL--INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG 58
+T+ G+ + VN + L+ + + VK ++++
Sbjct: 3 YEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGK 62
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDV-SVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
F G DI F + D L+ + + ED P VAA+ G+ALGGGLE+
Sbjct: 63 DVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMC 122
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
+ R+ A ++GLPE+ LG+ PGFGGT RLPRL+G+ A+E + K +E+ K+
Sbjct: 123 LAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKV 182
Query: 178 GLIDAVVTSEELLKVSRLWALDIAARRKPWIR---SLHRTDKLGSLSEAREVLKLARLQA 234
+DAVVT+++L + + + KL ++ + A
Sbjct: 183 SAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVA 242
Query: 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294
+ PN P + I++ G + EA F +L S L+ +F + K
Sbjct: 243 GQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKK 302
Query: 295 VPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEAN 354
V D + V++ AV+G G+MG GIA +++K++N + +G+
Sbjct: 303 KAKVYDK--IAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL 360
Query: 355 VRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACP 414
+ G V +G++T K L ++ L Y +F +VD+V+EAV+E+ +KQ + +E+E
Sbjct: 361 LVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVR 420
Query: 415 PHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474
ILA+NTSTI ++++ + + +G HFF+P H+MPL+E++R E++S + +
Sbjct: 421 EDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVA 480
Query: 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
K + K P+VV +C GF VNR FPY LVS GVD RID + FG P+GP
Sbjct: 481 YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAY 539
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 632 bits (1631), Expect = 0.0
Identities = 177/524 (33%), Positives = 280/524 (53%), Gaps = 16/524 (3%)
Query: 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
+A+I L NPPVNA++ ++ +++ ++A S VKAIV+ G G F G DI+ F
Sbjct: 29 HSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSA 88
Query: 73 VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
P +++ +V+ I+ +KP++AA++G+ALGGGLELA+GCH RIA K ++G
Sbjct: 89 --------FTPGLALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVG 140
Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
LPE+TLG++PG GTQ LPR+VG+ A++++ K ++++E +LG++DAVV + ++
Sbjct: 141 LPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVV-KSDPVEE 199
Query: 193 SRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLDVIE 252
+ +A I + R + SL V A + +K P + + C+ I+
Sbjct: 200 AIKFAQKIIDKPIEPRRI--FNKPVPSLPNMDSVFAEAIAKVRKQYPGVLAPETCVRSIQ 257
Query: 253 EGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVR 309
+ H G+ +E K+F L ++ L + FFA+++ +K + + V
Sbjct: 258 ASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVS 317
Query: 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA 369
V V+G G MG GIA + I VV E + + L K I + +R +
Sbjct: 318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS 377
Query: 370 NNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429
A L+ E VD+V+EAV E + LK+K+F+EL C P L TNTS ++++
Sbjct: 378 --AKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVD 435
Query: 430 IVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489
+ T +IG HFFSPAHVM LLE++ + +S I +M++ K I K+ VVVGNC
Sbjct: 436 DIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNC 495
Query: 490 TGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
GF NR PY L+ G +D + FG +GPF+
Sbjct: 496 YGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFR 539
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} Length = 463 | Back alignment and structure |
|---|
Score = 355 bits (913), Expect = e-118
Identities = 87/260 (33%), Positives = 129/260 (49%), Gaps = 5/260 (1%)
Query: 277 DTSRGLVHVFFAQRATSKVPNVTDI---GLKPRGVRKVAVIGGGLMGSGIATAHILNNIY 333
++ L + FFA+++ +K + + V V V+G G MG GIA + I
Sbjct: 3 GQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGIS 62
Query: 334 VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE 393
VV E + + L K I + +R + A L+ E VD+V+E
Sbjct: 63 VVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQAS--AKPKLRFSSSTKELSTVDLVVE 120
Query: 394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVM 453
AV E + LK+K+F+EL C P L TNTS ++++ + T +IG HFFSPAHVM
Sbjct: 121 AVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVM 180
Query: 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV 513
LLE++ + +S I +M++ K I K+ VVVGNC GF NR PY L+ G
Sbjct: 181 RLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEEGS 240
Query: 514 DVFRIDSAIRSFGLPIGPFQ 533
+D + FG +GPF+
Sbjct: 241 KPEDVDGVLEEFGFKMGPFR 260
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460 | Back alignment and structure |
|---|
Score = 334 bits (859), Expect = e-110
Identities = 77/265 (29%), Positives = 125/265 (47%), Gaps = 9/265 (3%)
Query: 275 MLDTSRGLVHVFFAQRATSKVPNV-----TDIGLKPRGVRKVAVIGGGLMGSGIATAHIL 329
+ + + + ++ + V VA+IGGG MG +A L
Sbjct: 16 LYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGL 75
Query: 330 NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389
I L N + + ++ + A + +L + LK D+ + + D
Sbjct: 76 AGIETFLVVRNEQRCKQELEVMYAR---EKSFKRLNDKRIEKINANLKITSDFHKLSNCD 132
Query: 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSP 449
+++E+VIE + LK+++F+ LE C CI TNTS++DLN + ++G HFF+P
Sbjct: 133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNP 192
Query: 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY-SQSARLL 508
A+V+ L+EI+ TS+Q I + IKK+PV+VGNC F NR Y QS +L+
Sbjct: 193 ANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLM 252
Query: 509 VSLGVDVFRIDSAIRSFGLPIGPFQ 533
G +ID I +FG +GP
Sbjct: 253 YEYGYLPHQIDKIITNFGFLMGPMT 277
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 3e-70
Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 2/228 (0%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD 367
V+ VAVIG G MG+GIA + V+L ++++E L + I I A + VTRGKLT +
Sbjct: 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAE 64
Query: 368 KANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427
LK L V D D+VIEA E + +K+ +F++L + CPP +L TNTS+I
Sbjct: 65 TCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS 124
Query: 428 LNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487
+ + + + +R+ G HFF+PA VM L+E+V T+A+V+ L + K PV
Sbjct: 125 ITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCH 184
Query: 488 NCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQ 533
+ GF VNR PY A + V ID+A+R G P+GP +
Sbjct: 185 STPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLE 232
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Length = 483 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 1e-17
Identities = 23/159 (14%), Positives = 48/159 (30%), Gaps = 9/159 (5%)
Query: 377 KGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTS 436
GV D+ ++ + +EA + K+ + + +L T + + +
Sbjct: 280 LGVYDWRAEREAVVGLEA-VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLA 338
Query: 437 SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR 496
+I ++ I + + K + + + G + R
Sbjct: 339 RPVVVIDKMA------GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWR 392
Query: 497 AFFPYSQSARLLVSLGV-DVFRIDSAIRS-FGLPIGPFQ 533
A + GV ID+A+R P GP
Sbjct: 393 TVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLA 431
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Length = 302 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 5e-67
Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 8/238 (3%)
Query: 304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG- 362
K V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 11 KKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF 70
Query: 363 ----KLTQDKANNALKMLKGVLDYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHC 417
K + L + D + D+V+EA++E++ +K ++F L+K H
Sbjct: 71 AENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHT 130
Query: 418 ILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGK 477
I A+NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+ K
Sbjct: 131 IFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSK 190
Query: 478 IIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAIR-SFGLPIGPFQ 533
+ K PV + GF VNR PY A L G ID+A++ G P+GPF+
Sbjct: 191 ALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFE 248
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 4e-65
Identities = 80/191 (41%), Positives = 110/191 (57%), Gaps = 1/191 (0%)
Query: 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK 72
D +A+ TL + P NA++ ++ + + ++ D+++ +V+ G G FS G DI F
Sbjct: 14 DHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTS 73
Query: 73 VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG 132
V A + + + +E C KP++AA+ G ALGGGLE AM CH R A +LG
Sbjct: 74 VTEAKQATELAQLGQV-TFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLG 132
Query: 133 LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKV 192
LPELTLG+IPGF GTQRLPR VG +KA EMML S IT E K GL++ V E L
Sbjct: 133 LPELTLGLIPGFAGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEETFLDD 192
Query: 193 SRLWALDIAAR 203
+ A IA +
Sbjct: 193 TLKVAKQIAGK 203
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 208 bits (533), Expect = 2e-64
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
VT +D + +I + + VN L + L + + A RD+V A+V+ GN FSGGF
Sbjct: 7 VTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAA-DRDNVGALVIAGNHRVFSGGF 64
Query: 66 DINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
D+ V +G+ D+ + + KP+V A G A+ G L R
Sbjct: 65 DLKVLT----SGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHR 120
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
+AA + E+ +G+ + + L + S + L+K+ E G ID +
Sbjct: 121 VAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEI 180
Query: 184 VTSEELLKVSRLWALDIAAR 203
E +L + A + A
Sbjct: 181 SLPEVVLSRAEEAAREFAGL 200
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 3e-64
Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 5/197 (2%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
GVA I L NPPVN + ++ L+ V+ IV + F D+ +
Sbjct: 16 EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIG 75
Query: 71 QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
+K+ +++ V + V LI + + + G A GGG E AA
Sbjct: 76 EKMDALQELAASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135
Query: 128 -KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
LG E +G+IPG GGTQ L VG ++A+E++L + +E G I+ + +
Sbjct: 136 ETAGLGQIEALMGIIPGGGGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPA 195
Query: 187 EELLKVSRLWALDIAAR 203
+EL + A +IAA
Sbjct: 196 DELDEYVDRVARNIAAL 212
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 2e-63
Identities = 57/193 (29%), Positives = 100/193 (51%), Gaps = 4/193 (2%)
Query: 13 DGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQ 71
DG+A I L N+ + ++ D+K +++ + + FS G DIN +
Sbjct: 17 DGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLR 76
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQ 130
+ E ++ I + +A +EG +GGGLE+A+ C R + +
Sbjct: 77 SA-DPRFKTQFCLFCNE-TLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGK 134
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+GLPE++LGV+ G GGTQRL RL+G S+A++M + ++IT +E ++GL++ V E
Sbjct: 135 IGLPEVSLGVLAGTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAETR 194
Query: 191 KVSRLWALDIAAR 203
+ +R +A +A
Sbjct: 195 ERTREYARKLANS 207
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-63
Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 5/196 (2%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
+ V T PP+N + +V L EE + ++ F D+
Sbjct: 15 DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKV 74
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP- 127
+ A L + + +A + G A G G E + C R A+
Sbjct: 75 PEY-TAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRE 133
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
LG PE+ +G PG G Q L RL+G +A+E +L S ++ + G ++ V
Sbjct: 134 NAILGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDA 193
Query: 188 ELLKVSRLWALDIAAR 203
EL + A ++
Sbjct: 194 ELDEFVAGIAARMSGF 209
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 4e-63
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 2 AAPRVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
+ RV +E GVA++ NPPVN+L++ + L E+ + + ++LT +
Sbjct: 1 GSQRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPG 60
Query: 61 -FSGGFDINVFQK---VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
FS G D+ H AG + ++ + +V+A+ G GG +
Sbjct: 61 VFSAGLDLTEMCGRSPAHYAGYWKAVQEL-----WLRLYQSNLVLVSAINGACPAGGCLV 115
Query: 117 AMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174
A+ C RI A P+ +GL E LG+I F L +G A + L E
Sbjct: 116 ALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEA 175
Query: 175 WKLGLIDAVVTSEELLKVSRLWALDIAAR 203
++G++D VV E++ + A
Sbjct: 176 LQVGIVDQVVPEEQVQSTALSAIAQWMAI 204
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 4e-63
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 2/192 (1%)
Query: 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+ G+A + + PP NA+ + + +E RDD+ A+VL G FS G D+ +
Sbjct: 31 DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELR 90
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ A + V +E ++ + KP VAAV G ALG GL LA+ R++ +
Sbjct: 91 TL-NAPEADTAARVRLE-AIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKF 148
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
G E+ G+IPG GG RL R+VG S+A E++ + +EE LGLID +V +++
Sbjct: 149 GATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDDVYD 208
Query: 192 VSRLWALDIAAR 203
+ WA
Sbjct: 209 SAVAWARRYLEC 220
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 3e-61
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 5/192 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V I L P NAL ++A LKD + D ++A+V+ G G FS G D++ +
Sbjct: 24 GPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELR 81
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ A + + V + I+ C+ P++AA++G +GGGLELA H R+A
Sbjct: 82 ER-DATEGLVHSQTWHR-VFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYY 139
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
LPE + G+ G GG+ RLPRL+G+++ +MML + ++ EG G ++ +
Sbjct: 140 ALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGSAYD 199
Query: 192 VSRLWALDIAAR 203
+ +A
Sbjct: 200 KALELGNRVAQN 211
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 8e-61
Identities = 62/205 (30%), Positives = 110/205 (53%), Gaps = 4/205 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ ++++ V I+L N+L++ ++ L++ + + + ++LTG G
Sbjct: 5 LQLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGE 64
Query: 60 R-FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
+ F G D+ + V + + ++E +P++AA+ G+ALGGG EL++
Sbjct: 65 KAFCAGADLKERAGM-NEEQVRHAVSMIRT-TMEMVEQLPQPVIAAINGIALGGGTELSL 122
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
C RIAA LGL E TL +IPG GGTQRLPRL+G+ +A E++ + I+++E + G
Sbjct: 123 ACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYG 182
Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
L++ VV L + + A IA+
Sbjct: 183 LVEFVVPVHLLEEKAIEIAEKIASN 207
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 4e-60
Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 4/195 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DG+A + L P NA++ + + D E +VLTG G ++ G D+ +
Sbjct: 17 DGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYF 76
Query: 72 KVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ AG L + E + KP +A V G GGG + C I A +
Sbjct: 77 REVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE 136
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
GL E+ G+ PG ++ + VG +++ ++ K+ ++ ++GL++ V +
Sbjct: 137 ATFGLSEINWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ 196
Query: 189 LLKVSRLWALDIAAR 203
L +V+ A ++ +
Sbjct: 197 LREVTIELARNLLEK 211
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 7e-60
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 19/205 (9%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
V+ + +DGVA +TL N VNA++ ++ ++A D +++TG G SGG+
Sbjct: 8 VSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQA--EKDRAIVIVTGQPGILSGGY 64
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNL------IEDCKKPIVAAVEGLALGGGLELAMG 119
D+ V + ++ LV + PI+ A G A+ G L +
Sbjct: 65 DLKVMTS---------SAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLS 115
Query: 120 CHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
RI +GL E+ +G+ G + + S ++ ++ E G
Sbjct: 116 ADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAG 175
Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
+D VV+ EEL + A +
Sbjct: 176 FLDKVVSVEELQGAALAVAAQLKKI 200
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 7e-60
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 5/193 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
V II L P V NAL+ +VA + E + V+ IVLTG G F+ G DI
Sbjct: 12 EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEM 71
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
K D + ++ + + K P++AAV GLALGGG ELA+ C +A+ +
Sbjct: 72 AKD----DPIRLEWLNQFADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAE 127
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G PE+ LGV+PG GGTQRL +L+G +A+E + ++++E +LG+++ VV+ E L+
Sbjct: 128 FGFPEVNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPELLM 187
Query: 191 KVSRLWALDIAAR 203
+ + A +A +
Sbjct: 188 EETMRLAGRLAEQ 200
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 9e-60
Identities = 72/204 (35%), Positives = 108/204 (52%), Gaps = 5/204 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ GV +I L P NAL + A + D + + ++ AIV+TG+
Sbjct: 6 TTYTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSER 65
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G DI + + ++ + + +KPIVAAV G ALGGG ELAM
Sbjct: 66 AFAAGADIAEMVTL----TPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAML 121
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C IAA + G PE+TLG++PG GGTQRL R VG +KA+++ L +S+T+EE ++GL
Sbjct: 122 CDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGL 181
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ +V + +LL + A IA
Sbjct: 182 VSRIVPAADLLDEALAVAQRIARM 205
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 1e-59
Identities = 67/204 (32%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M + +E + V IITL P NAL ++ + E D+ AI++TG+
Sbjct: 22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAK 80
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G DI + + + + P +AAV G ALGGG ELAM
Sbjct: 81 AFAAGADIKEMADL----TFADAFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMM 136
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C IAA + G PE+ LGV+PG GG+QRL R +G +KA++++L +++ + E + GL
Sbjct: 137 CDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGL 196
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ VV +++LL +R A I+
Sbjct: 197 VSRVVPADDLLTEARATATTISQM 220
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 2e-59
Identities = 61/200 (30%), Positives = 91/200 (45%), Gaps = 2/200 (1%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSG 63
+ E DG+A IT+ P V NA V + +A D++ I+LTG G + F
Sbjct: 29 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
G D V G D S + ++V I C KP+VA V G ++GGG L M C
Sbjct: 89 GGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLT 148
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
IAA G +G G G + R+VG KA E+ L + +++ +GL++ V
Sbjct: 149 IAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTV 208
Query: 184 VTSEELLKVSRLWALDIAAR 203
V +L K + W ++
Sbjct: 209 VPLADLEKETVRWCREMLQN 228
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 2e-59
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 8/192 (4%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+GV IT+ + N + IV GL+ F K ++LTG G FS G
Sbjct: 11 NGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLI 70
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
+ +V V + LI DC+ PI+AA++G + GGGL L + + + ++
Sbjct: 71 R-------KTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVY 123
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
+ G P + L +G A EM+ ++ +E + G+ VV+ +++L
Sbjct: 124 ATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQDVLN 183
Query: 192 VSRLWALDIAAR 203
++ IA
Sbjct: 184 YAQQLGQKIAKS 195
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 197 bits (503), Expect = 2e-59
Identities = 49/198 (24%), Positives = 93/198 (46%)
Query: 6 VTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGF 65
+ E G GV + L +P +N++ + L D + DV+ +++ G G FS G
Sbjct: 15 LRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGG 74
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
+ + G + + +V + + KP+V+A+ G A+G GL +A+ +A
Sbjct: 75 SFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVA 134
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
+ ++ LGV G P LVG++KA +L ++++ EE ++GL+ V
Sbjct: 135 SATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVD 194
Query: 186 SEELLKVSRLWALDIAAR 203
+E+L + A ++A
Sbjct: 195 DDEVLPTATRLAENLAQG 212
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 2e-59
Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 3/203 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + + V +I L P NA ++ L E + D++A VL G G
Sbjct: 6 SDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGP 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G D+ G SL P+ + KP++ AV G L G+ELA+
Sbjct: 65 LFTAGLDLASVAA-EIQGGASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALA 123
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
IA E+ G+ P G T R PR G A+ ML + + + E ++G+
Sbjct: 124 ADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGI 183
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
+ +V E + + A IA
Sbjct: 184 VQEIVPVGEHVDTAIAIAQTIAR 206
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 4e-59
Identities = 53/204 (25%), Positives = 93/204 (45%), Gaps = 13/204 (6%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+P + ++ D V +TL P NAL+ + + +A + DDV +++TG
Sbjct: 6 ADSPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADP 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G D+ + + D KP++ A+ G A+ GGLELA+
Sbjct: 65 VFCAGLDLKELG-----------DTTELPDISPKWPDMTKPVIGAINGAAVTGGLELALY 113
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C IA+ + +G++P +G + RLP+ VG+ A M L +++++ + GL
Sbjct: 114 CDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGL 173
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ VV ++LL +R A I
Sbjct: 174 VTEVVAHDDLLTAARRVAASIVGN 197
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 5e-59
Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 3/203 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
AA + +E + V I+T+ P NAL+ +V+ ++E D ++A +LTG G
Sbjct: 6 SAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGS 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
+ G D++ V G + ++ + L KP++AAV G LGGG E+
Sbjct: 65 AYCVGGDLSDGWMV-RDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQ 123
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
R++ GLPE+ G++PG G RL R + +KA+EM+L + +T+ E + GL
Sbjct: 124 TDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGL 183
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
+ VV + L +R A I
Sbjct: 184 VGHVVPAGTALDKARSLADRIVR 206
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 1e-58
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 8/206 (3%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+ V + + VA+I NAL+ + L + +R +++ I+L G
Sbjct: 1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58
Query: 60 R--FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELA 117
FS G DI+ G L D + + +I+ KPI++ VEG GG E+
Sbjct: 59 SKVFSAGHDIHELP---SGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMI 115
Query: 118 MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKL 177
M IAA + + + LGV G L R G E++ + IT++ +
Sbjct: 116 MSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAV 175
Query: 178 GLIDAVVTSEELLKVSRLWALDIAAR 203
G+++ VV EEL + A I+ +
Sbjct: 176 GILNHVVEVEELEDFTLQMAHHISEK 201
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 194 bits (496), Expect = 1e-58
Identities = 73/193 (37%), Positives = 93/193 (48%), Gaps = 5/193 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
N V +I L P NAL ++ L E V AIVLTG F+ G DI
Sbjct: 14 NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
Q + I KKP++AAV G ALGGG ELAM C A K Q
Sbjct: 74 QNR----TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G PE+ LG IPG GGTQRL R VG S A+EM+L I++++ + GL+ + E L+
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLV 189
Query: 191 KVSRLWALDIAAR 203
+ + A IA
Sbjct: 190 EEAIQCAEKIANN 202
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 1e-58
Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 4/193 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
D V +ITL +P N + + +KD A + D V+A+V+ G R FS G D N
Sbjct: 8 DEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEV 67
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+++ + D+ D ++ + + + KP +AAV+G A+G G + A+ R+ A
Sbjct: 68 KQLSRSEDIEEWIDRVID-LYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTAN 126
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+PEL G+ G L G S E++ +S+ + L++ VV S LL
Sbjct: 127 FVMPELKHGIGCSVGAAI-LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALL 185
Query: 191 KVSRLWALDIAAR 203
+ A +A+
Sbjct: 186 DAAITQAHVMASY 198
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 2e-58
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 2/204 (0%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
P + GV IT NA+ + GL + + + + V+A++L G GG
Sbjct: 7 ARYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGG 65
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
FS G + +++ + + L +V + +P+VAAVE +A+G GL LA+
Sbjct: 66 VFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALA 125
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+ T+L L LGV G P LVG++KA +LL++ +T EE +LGL
Sbjct: 126 ADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGL 185
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ V E++ + + A +A
Sbjct: 186 VALAVEDEKVYEKALEVAERLAQG 209
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 2e-58
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
DG I L N+L ++ ++ A + DD K ++L+ G F G D F
Sbjct: 13 DGFTHILLSTKSSENNSLNPEVMREVQSALSTA-AADDSKLVLLSAVGSVFCCGLDFIYF 71
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ ++ + VN KKPI+ AV G A+G G + C A K
Sbjct: 72 IRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK 131
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
P T G P T P+++G + A EM+L + +T++E GL+ V
Sbjct: 132 AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191
Query: 189 LLKVSRLWALDIAAR 203
+ + ++A+
Sbjct: 192 FTQEVMVRIKELASC 206
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 3e-58
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 6/208 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG- 58
M+ V E+ + ITL P N L + L + + + +I+L
Sbjct: 1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHR 59
Query: 59 GRFSGGFDINVFQKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
FS G + + +V L V I K VA + G A GGG +
Sbjct: 60 AYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNM 119
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
+ C RIA + + +G+ P G + LPR++G + + ++L K TSEE +
Sbjct: 120 MLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALR 179
Query: 177 LGLIDAVV-TSEELLKVSRLWALDIAAR 203
LGLI + +EL + + + ++
Sbjct: 180 LGLIQEICENKQELQERVKNYLKAVSEG 207
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 3e-58
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 4/204 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
P + + GV + + P NAL + + +EA DV+ +VL G
Sbjct: 2 SLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEH 60
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G D+ F + V +++ KP++ AV+G+A+G G+ + +
Sbjct: 61 DFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQ 120
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
A +P ++LG+ P G +Q L + G KA E++ +K +E + GL
Sbjct: 121 ADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGL 180
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
++ +V E+ ++ A + A
Sbjct: 181 VNEIV--EDAYATAQATAQHLTAL 202
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 193 bits (494), Expect = 3e-58
Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 3/193 (1%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVF 70
+G+A +T+ P V NA VA + D F A +V IVLTG G F G D
Sbjct: 21 EGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKR 80
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
G +P ++V + LI KP++A V+G A+GGG L + C IAA
Sbjct: 81 GH-GGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAI 139
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
G +G G+ L R+VG KA E+ L + ++E +GL++ VV E++
Sbjct: 140 FGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199
Query: 191 KVSRLWALDIAAR 203
+ W +I
Sbjct: 200 DETVQWCKEIMKH 212
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 193 bits (493), Expect = 4e-58
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 4/194 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINV 69
N G+ ++ + N+L+ ++ L + S V+ I++ F G D+
Sbjct: 19 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE 78
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
K+ + +V V+N I + P +AA++GLALGGGLELA+ C R+AA
Sbjct: 79 RAKM-SSSEVGPFVSKIRA-VINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSA 136
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
++GL E L +IPG GGTQRLPR +G+S A E++ ++ + +E +GLI V+ +
Sbjct: 137 KMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQE 196
Query: 190 LKVSRLWALDIAAR 203
+ ALD+A
Sbjct: 197 GDAAYRKALDLARE 210
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 2e-57
Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 13/192 (6%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+ V I L P NAL +V L +A +AIVLTG G F G D++
Sbjct: 29 EAVLTIELQRPERRNALNSQLVEELTQAIRKA-GDGSARAIVLTGQGTAFCAGADLSGDA 87
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
D + + ++ P+V A+ G A+G GL+LAM C R+ AP
Sbjct: 88 FAADYPD-------RLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFF 140
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
P G+ +RL LVG +A M+L ++ +T+E G+ + + T +
Sbjct: 141 QFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADAQA 200
Query: 192 VSRLWALDIAAR 203
WA +IA
Sbjct: 201 ----WAAEIARL 208
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 2e-57
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 8/227 (3%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGVA++TL P N+ + + L ++ V+ IVLTG F G I+
Sbjct: 15 DGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAA 74
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
PD S V + + P++AAV G A+G G+ LA+ RI A + +
Sbjct: 75 ---ETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRY 131
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
+P++ GV P LPRLVG + A E++L S +++ + GL + + + ++L
Sbjct: 132 AIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGKVLG 191
Query: 192 VSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQA 234
+ A DIA P + L ++ +S A +
Sbjct: 192 AALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHL 238
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 7e-57
Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 5/204 (2%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
+ P +E I+T+ P NAL+ ++ + + ++ + D++ +LTG GG
Sbjct: 18 SGPDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGY 76
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL--IEDCKKPIVAAVEGLALGGGLELAM 118
F G D+ K GD + L KKP++AAVEG A+ GG E+
Sbjct: 77 FCAGMDLKAATK-KPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQ 135
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
G R+AA + G+ E + P G RL R + + A +++L + IT+ E ++G
Sbjct: 136 GTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMG 195
Query: 179 LIDAVVTSEELLKVSRLWALDIAA 202
L+ VV + L + A IAA
Sbjct: 196 LVGHVVPDGQALTKALEIAEIIAA 219
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 7e-57
Identities = 53/203 (26%), Positives = 83/203 (40%), Gaps = 3/203 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
RVT E + +I L NA ++A L E ++ + VL +G
Sbjct: 9 SGPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGE 67
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F+ G D+ A PD V+ + KP+V AV+G G+EL +
Sbjct: 68 HFTAGLDLMELAP-KLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLN 126
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
+AA T+ E+ G+ P G T R PR G + A+ +L ++E ++ L
Sbjct: 127 ADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRL 186
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
+ VV E L + +A IA
Sbjct: 187 LTEVVEPGEELARALEYAERIAR 209
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 3e-56
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 5/195 (2%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
DG I L NAL ++ + + A + DD K ++ + G F G D F
Sbjct: 31 DGFTQIVLSTRSTEKNALNTEVIKEIVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 89
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
K + ++ + VN KKPIV +V G A+G G + C A K
Sbjct: 90 VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
P T G P + P+++G + A EM++ + +T+ E GL+ V +
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209
Query: 189 LLKVSRLWALDIAAR 203
+ + ++A+
Sbjct: 210 FTQEVMIQIKELASY 224
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 4e-56
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 2/192 (1%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
+ V +TL P NA + +A V ++LTG+G FS G D+ Q
Sbjct: 14 NRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQ 73
Query: 72 KVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL 131
++ + KP++ AV GL +G G + + +L
Sbjct: 74 A-RITDPNFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARL 132
Query: 132 GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK 191
P +LGV P + LP+LVG A +++ S+ I +EE ++GL+ + + EELL
Sbjct: 133 KCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEELLP 192
Query: 192 VSRLWALDIAAR 203
+R A +AA+
Sbjct: 193 EARRHAEILAAK 204
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 5e-56
Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 6/202 (2%)
Query: 3 APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR- 60
AP E V +IT+ P NA+ + G+ D EEA +V+A+VLTG G +
Sbjct: 8 APGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKS 66
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
F G D+ + P+ V KP +AAV G ALGGG ELA+
Sbjct: 67 FCAGADLKAIAR-RENLYHPDHPEWGFAGYV--RHFIDKPTIAAVNGTALGGGTELALAS 123
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
+A + Q GLPE+ G+I GG R+ + A+ ++L + +++ GLI
Sbjct: 124 DLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLI 183
Query: 181 DAVVTSEELLKVSRLWALDIAA 202
+ VV + +L + A I
Sbjct: 184 NEVVEAGSVLDAALALASAITV 205
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 1e-55
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 3/192 (1%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ + IITL P N++ + GL ++ T +A V+TG G FS G D
Sbjct: 35 DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYL 94
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+++ D+ +V + C+ P+VAAV G A+G G L A
Sbjct: 95 KELSADADLRAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAY 154
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
L P + +G++ GG P + L A E L I+++ +LGL + V ++ +
Sbjct: 155 LADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA--DDPV 212
Query: 191 KVSRLWALDIAA 202
+ A I
Sbjct: 213 AEAIACAKKILE 224
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 1e-55
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 7/193 (3%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
TL P NAL+ +V L D + A R+ V +V G G FS GFD +
Sbjct: 14 RPAAWTFTLSRPEKRNALSAELVEALIDGVDAA-HREQVPLLVFAGAGRNFSAGFDFTDY 72
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+ + M + E+++ + +A G G G++L C R P+
Sbjct: 73 ETQSEGDLLLRMVRI--EMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAG 130
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+P L G++ GT+R +VG +A+ ++ +++ ++E ++G + +
Sbjct: 131 FRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQWP 187
Query: 191 KVSRLWALDIAAR 203
+ A A
Sbjct: 188 ALIDAAAEAATAL 200
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 1e-55
Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 7/205 (3%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
V ++ +A++TL P NA+A ++ K + + +DV+A+V+TG G F G
Sbjct: 25 VLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSG 84
Query: 65 FDIN-----VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
D ++L ++ V+ + +P++AA+ G A+GGGL LA+
Sbjct: 85 ADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALA 144
Query: 120 CHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
C R+A+ + G+ G + LPR +G S+A ++ML + + ++E ++G
Sbjct: 145 CDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIG 204
Query: 179 LIDAVVTSEELLKVSRLWALDIAAR 203
L+ V SE LL+ IA
Sbjct: 205 LVSRKVASESLLEECYAIGERIAGF 229
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 188 bits (478), Expect = 1e-55
Identities = 50/219 (22%), Positives = 88/219 (40%), Gaps = 17/219 (7%)
Query: 1 MAAPRVTMEVGNDGVAIITL-----INPPVNALAIPIVAGLKDKFEEA-----TSRDDVK 50
+ R+ E V I + INP + +V + T+
Sbjct: 29 GSTLRIIEEP-QRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP 87
Query: 51 AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL-----IEDCKKPIVAAV 105
+VL + F+ G D+ +F ++ GD + + D + V + + +A V
Sbjct: 88 HVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALV 147
Query: 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165
+G ALGGG E A+ CH IA +GLPE+ + PG G + + + A ++ML
Sbjct: 148 QGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAYSFMCQRISAHLAQKIMLE 207
Query: 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204
++E+ +GL+D VV + + + R
Sbjct: 208 GNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVI-RESKRT 245
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 2e-55
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
P V +E D + IIT+ P N++ + L D + + + +LTG GG
Sbjct: 13 TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGS 71
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGC 120
F G D+ F G+ V + KP++AAVEG AL GG ELA+
Sbjct: 72 FCAGMDLKAFA----RGE---NVVVEGRGLGFTERPPAKPLIAAVEGYALAGGTELALAT 124
Query: 121 HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLI 180
+AA + G+PE+ G++ G GG RLP + + A+E+ L ++++E LG++
Sbjct: 125 DLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMV 184
Query: 181 DAVVTSEELLKVSRLWALDIAA 202
+ + L + A I A
Sbjct: 185 NVLAEPGAALDAAIALAEKITA 206
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 2e-55
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 3/193 (1%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
VA++ L +P N L+ + L ++ + V+A+VLTG G FS G D+ +
Sbjct: 7 GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLE 66
Query: 72 KVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
+V G + + + + KP VAAV G A+ GG LA+ C + + +
Sbjct: 67 RVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEAR 126
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
LG E+ +G + + L R VG A +++L + + + E LGL++ + + L
Sbjct: 127 LGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKAL 185
Query: 191 KVSRLWALDIAAR 203
+ ++ A ++A
Sbjct: 186 EEAKALAEEVAKN 198
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} Length = 293 | Back alignment and structure |
|---|
Score = 187 bits (477), Expect = 2e-55
Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 26/239 (10%)
Query: 299 TDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGL 358
+D KV VIG GLMG GIA A I + VVL++V+ + L + I +
Sbjct: 3 SDKIHHHHHHMKVFVIGAGLMGRGIAIA-IASKHEVVLQDVSEKALEAAREQIPEEL--- 58
Query: 359 VTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCI 418
L ++ + KD D+V+EAV E + K ++ E+E+ +
Sbjct: 59 --------------LSKIEFTTTLEKVKDCDIVMEAVFEDLNTKVEVLREVERLT--NAP 102
Query: 419 LATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKI 478
L +NTS I ++ + E+ S R +G H+ +P HVMPL+EIV + T ++ + + +
Sbjct: 103 LCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRE 162
Query: 479 IKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIR-SFGL---PIGPFQ 533
+ K VV VNR A ++ GV +D + GL GP
Sbjct: 163 LGKEVVVCKG--QSLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLG 219
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 185 bits (473), Expect = 4e-55
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 8/198 (4%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR------FSGGF 65
G+A I + P NA V L D F A + + ++LTG G F G
Sbjct: 18 GGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGG 77
Query: 66 DINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIA 125
D +V + G D P ++V + LI K ++A V G A+GGG L + C IA
Sbjct: 78 DQSVRGE-GGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIA 136
Query: 126 APKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185
A G +G G G+ L R+VG KA E+ L + +++E ++G+++ VV
Sbjct: 137 ADNAIFGQTGPKVGSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVP 196
Query: 186 SEELLKVSRLWALDIAAR 203
+ L + WA +I ++
Sbjct: 197 VDRLEEEGIQWAKEILSK 214
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 8e-55
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 4/195 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
DGVA IT+ P NAL++ + + D A D V A+++TG F GF +
Sbjct: 10 EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREI 69
Query: 71 QKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP 127
G V ++ +++ I K+P++AA+ G+A GGGL +++ I A
Sbjct: 70 PLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICAD 129
Query: 128 KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
+ T+G+ + L R+VG+ +A+E+ML ++++ EE GL+ V +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 188 ELLKVSRLWALDIAA 202
E +V+ A ++AA
Sbjct: 190 EFREVAWKVARELAA 204
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 1e-54
Identities = 36/200 (18%), Positives = 82/200 (41%), Gaps = 4/200 (2%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+ +G+ + + D F + + D + ++LTG+G +
Sbjct: 25 LHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAE 84
Query: 65 FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARI 124
D V + +++ N + D + P+++AV G AL E + +
Sbjct: 85 IDFPSLGDVTNPREWDKTYWEGKKVLQN-LLDIEVPVISAVNGAALLHS-EYILTTDIIL 142
Query: 125 AAPKTQL-GLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
A+ T +P L G++PG G P +GL + + + +T+++ ++L ++ V
Sbjct: 143 ASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEV 202
Query: 184 VTSEELLKVSRLWALDIAAR 203
+ +L++ + A +A +
Sbjct: 203 LPQSKLMERAWEIARTLAKQ 222
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 2e-54
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + EV + A ITL P NAL+ ++ L+ + EA + D V +V+TG G
Sbjct: 8 DSFDTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGR 66
Query: 60 RFSGGFDINVFQK-----VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
F G D+ + + + + KP++ AV G+ G G+
Sbjct: 67 AFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGM 126
Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML--LSKSITSE 172
+ IA+ + P +++G++ G R+ R++ S A+ M L + ++++
Sbjct: 127 DWVTTTDIVIASEQATFFDPHVSIGLVAG-RELVRVSRVLPRSIALRMALMGKHERMSAQ 185
Query: 173 EGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
++LGLI +V + LL+ + A + +
Sbjct: 186 RAYELGLISEIVEHDRLLERAHEIADIVNS 215
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 9e-54
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 4/193 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
VA +TL P NA + A + ++A + +V+ +V+TG G F G D++
Sbjct: 10 KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGV 69
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
D + ++ + +KP+VAAV G A G G+ LA+ C R+ + K
Sbjct: 70 T---EEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKAS 126
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELL 190
+ +G++P G LPRLVG +KA+E+ +L + +T+EE LGL V+ +
Sbjct: 127 FAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSDWE 186
Query: 191 KVSRLWALDIAAR 203
+ + +A ++A
Sbjct: 187 EEVKQFAERLSAM 199
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 1e-53
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 4/194 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DGVA +TL P NAL A L+D E + R V+A+VL G G F G D++
Sbjct: 25 DGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEII 84
Query: 72 KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
+ D + + D + VV + +C P++AA+ G+A G G LA+ R+A P T
Sbjct: 85 GATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPST 144
Query: 130 QLGLPELTLGVIPG-FGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
+ +G+ G G LPR+VGL A +++L ++ + E ++GLI +
Sbjct: 145 RFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGR 204
Query: 189 LLKVSRLWALDIAA 202
+ +R A +A
Sbjct: 205 ADEAARTLARRLAD 218
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-53
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 5/207 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
++ + EV ++GV +TL P + L+ ++A L D A D V +V+ G G
Sbjct: 3 LSQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRI 62
Query: 61 FSGGFDINVFQKVHGAGDVSLMPDVSV----ELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
F G D+ + D + ++ + C KP +A VEG+A GL+L
Sbjct: 63 FCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQL 122
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
C A+P + LP + G + R++G EM L + ++
Sbjct: 123 MAACDLAYASPAARFCLPGVQNGGFCTTPAV-AVSRVIGRRAVTEMALTGATYDADWALA 181
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
GLI+ ++ L A +AAR
Sbjct: 182 AGLINRILPEAALATHVADLAGALAAR 208
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-53
Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 6/201 (2%)
Query: 3 APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
P V +E V + L P NA+ P A L F E + + VL G+ G F
Sbjct: 10 QPAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTF 68
Query: 62 SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G D+ G ++ + KP++AA+ G A+ GG+ELA+ C
Sbjct: 69 CAGADLKAMGTDRGN-ELHPHGPGPMGPS---RLRLSKPVIAAISGHAVAGGIELALWCD 124
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
R+ LG+ GV GGT RLPRL+G S+A++++L + + + E +GL++
Sbjct: 125 LRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVN 184
Query: 182 AVVTSEELLKVSRLWALDIAA 202
VV + + + A +IAA
Sbjct: 185 RVVARGQAREAAETLAAEIAA 205
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 2e-53
Identities = 64/201 (31%), Positives = 96/201 (47%), Gaps = 10/201 (4%)
Query: 3 APRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
A V +E D V +IT+ P NA+ + GL ++ S D+ ++TG GG F
Sbjct: 6 ADEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64
Query: 62 SGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G D+ F G +S + +KPI+AAVEG AL GG EL + C
Sbjct: 65 CAGMDLKAFVS--GEAVLSERGLGFTNV------PPRKPIIAAVEGFALAGGTELVLSCD 116
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
+A + G+PE+ G++ G GG RLP + A+E+ L +S T+E+ K G I+
Sbjct: 117 LVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFIN 176
Query: 182 AVVTSEELLKVSRLWALDIAA 202
+V + L + A I A
Sbjct: 177 RLVDDGQALDTALELAAKITA 197
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-53
Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 11/234 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
A V E GVAIIT NA + AG + A + ++ IVLTG G
Sbjct: 26 DAQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGR 85
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVS------VELVVNLIEDCKKPIVAAVEGLALGGG 113
F G + G + E + + +KP++AA+ G +G G
Sbjct: 86 GFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIG 145
Query: 114 LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
L A+ C R AA + G+I FG + LPRL + A++++L ++ +EE
Sbjct: 146 LTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEE 205
Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAARRKP----WIRSLHRTDKLGSLSEA 223
+LGL+ VVT E+L+ + +A DIA P I+ D + EA
Sbjct: 206 AAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEA 259
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 3e-53
Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 9/196 (4%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+ GV ++T+ L F + + K ++LTG G F D F
Sbjct: 23 DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSF 82
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
G ++ E ++N + + P++AAV G + E+ + +AA
Sbjct: 83 N----LGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPEIPVMSDIVLAAES 137
Query: 129 TQLG-LPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE 187
P G++PG G P ++G ++ +L + + + G ++ V++ +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 197
Query: 188 ELLKVSRLWALDIAAR 203
ELL + A IA +
Sbjct: 198 ELLPRAWELARGIAEK 213
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 4e-52
Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 10/204 (4%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ +++E + V I L P NA+ P++ L +A + + V+A++LTG G
Sbjct: 3 GSMNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGR 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G D+ A + VV I KP++A V G A+G G LA+
Sbjct: 62 AFCSGGDLTGGDTAGAAD--------AANRVVRAITSLPKPVIAGVHGAAVGFGCSLALA 113
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C +AAP + L +G++P G + LP L+G ++ M + ++ I++ ++ G+
Sbjct: 114 CDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGM 173
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
I + +++E V ++
Sbjct: 174 ISHITSADEYESVLTDVLRSVSGG 197
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 175 bits (447), Expect = 3e-51
Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 4/194 (2%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
DG+ I P NA+ + + + A S+DD VLTGNG +S G D+ F
Sbjct: 34 DGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNFT 92
Query: 72 KVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT 129
+ G + +V L V D KP++A V G A+G + L A A+ +
Sbjct: 93 DIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRA 152
Query: 130 QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189
P LG P + P+++ +KA EM++ K +T+ E GL+ V
Sbjct: 153 TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTF 212
Query: 190 LKVSRLWALDIAAR 203
K A
Sbjct: 213 QKEVWTRLKAFAKL 226
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 4e-51
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 7/207 (3%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ +V +D +A ITL P NA ++ L + A +DV IVL NG
Sbjct: 17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGK 75
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL---IEDCKKPIVAAVEGLALGGGLEL 116
FS G D+ V + + + + KP +AAV+G + GGL L
Sbjct: 76 HFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLL 135
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
C IAA P + + + G +G KA E++ +++T+EE +
Sbjct: 136 CWPCDLIIAAEDALFSDPVVLMDI--GGVEYHGHTWELGPRKAKEILFTGRAMTAEEVAQ 193
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAAR 203
G+++ VV + L +R A +IA
Sbjct: 194 TGMVNRVVPRDRLDAETRALAGEIAKM 220
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 2e-50
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 4/204 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+ + E+ D V ++T+ NA ++ ++ + + A + +V+ IVL NG
Sbjct: 1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGK 59
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAM 118
FS G D+ Q + + + D + + ++ I KP +A V+G A GGG LA
Sbjct: 60 HFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAA 119
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
C IA+ + E+ LG+IP + + R +G A + + ++ + + L
Sbjct: 120 ACDIAIASTSARFCFSEVKLGLIPA-VISPYVVRAIGERAAKMLFMSAEVFDATRAYSLN 178
Query: 179 LIDAVVTSEELLKVSRLWALDIAA 202
L+ V + LL+ + +A I+
Sbjct: 179 LVQHCVPDDTLLEFTLKYASQISN 202
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 177 bits (451), Expect = 3e-50
Identities = 52/226 (23%), Positives = 84/226 (37%), Gaps = 26/226 (11%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-- 57
+ V +E DGVA +T+ NA V ++ + A V+ +L G
Sbjct: 164 VEMEAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVM 222
Query: 58 ------GGR-FSGGFDINVFQK--------------VHGAGDVSLMPDVSVELVVNLIED 96
G R FS G ++ + + V +
Sbjct: 223 SHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPR 282
Query: 97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156
+KP VAAV+G A+GGG +L + +A+ LP G+IPG RL R G
Sbjct: 283 IEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG-AANLRLGRFAGP 341
Query: 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
+ +++L + I ++E L+D VV +EL +
Sbjct: 342 RVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG 387
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 6e-50
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 18/210 (8%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-------FSG 63
+D + P V NA V L + A DV ++LTGNG F
Sbjct: 64 DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 123
Query: 64 GFDINVFQK---------VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGL 114
G D + + DV+ + + V LI K ++ V G A GGG
Sbjct: 124 GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 183
Query: 115 ELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
L + C +A+ + + + +G G G+ L R VG A E+ L ++ T+E+
Sbjct: 184 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 243
Query: 174 GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
++G ++AV EL V WA +I A+
Sbjct: 244 MHQMGAVNAVAEHAELETVGLQWAAEINAK 273
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 2e-49
Identities = 48/203 (23%), Positives = 90/203 (44%), Gaps = 12/203 (5%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
V + L P NA+ L + F++ + D +A+V++G G F+ G D+
Sbjct: 12 KHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMA 71
Query: 72 KVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
+ ++ L +IE C KP++AA+ G +GGG++L C
Sbjct: 72 SDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDI 131
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG-LSKAIEMMLLSKSITSEEGWKLGLID 181
R + E+ +G+ G QRLP+++G S E+ ++ + ++E GL+
Sbjct: 132 RYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVS 191
Query: 182 AVV-TSEELLKVSRLWALDIAAR 203
V + +L + A DI+++
Sbjct: 192 RVFPDKDVMLNAAFALAADISSK 214
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 2e-48
Identities = 46/220 (20%), Positives = 70/220 (31%), Gaps = 18/220 (8%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+++ + II LINP NAL L + E A DV ++ +G
Sbjct: 6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGR 64
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLAL 110
FS G D K G + S + V + K ++ + G A+
Sbjct: 65 FFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAI 124
Query: 111 GGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
G L C + K L P LG+I G T LP G + E ++ +K
Sbjct: 125 GLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPF 184
Query: 170 TSEEGWKLGLIDAVVTSEELL------KVSRLWALDIAAR 203
+ + G I KV +
Sbjct: 185 KYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGL 224
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 2e-48
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 3/204 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+ P + + GV +TL P NAL+ ++A L + F + V+A+VL +G
Sbjct: 22 MSEPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGK 81
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G D+ + + +++ I+ P++A V G+A G +L
Sbjct: 82 AFCAGHDLKEMRAEPSREYYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAM 140
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C +A + + + +G+ G L R VG A EM++ + +++++ LGL
Sbjct: 141 CDLAVATRDARFAVSGINVGLFCSTPGVA-LSRNVGRKAAFEMLVTGEFVSADDAKGLGL 199
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
++ VV + L I A+
Sbjct: 200 VNRVVAPKALDDEIEAMVSKIVAK 223
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 2e-46
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 3/204 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ PR T DG+ I L NP N L++ ++ L+ +D+K I+++ G
Sbjct: 29 ESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGP 88
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
FS G D+ + G D + V+ I + P++A V GLA G +L
Sbjct: 89 VFSSGHDLKELTEEQGR-DYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVAS 147
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
C +A+ K+ P + +G+ G L R V A+EM+ + I+++E GL
Sbjct: 148 CDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALEMLFTGEPISAQEALLHGL 206
Query: 180 IDAVVTSEELLKVSRLWALDIAAR 203
+ VV EL + + A IA+
Sbjct: 207 LSKVVPEAELQEETMRIARKIASL 230
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 2e-46
Identities = 59/320 (18%), Positives = 110/320 (34%), Gaps = 30/320 (9%)
Query: 12 NDGVAIITL-----------INPPVNALAIPIVAGLKDKFEEATS-RDDVKAIVLTGNGG 59
N VA + + +N+ + + L D + +V+ +VLT
Sbjct: 28 NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKD 87
Query: 60 R-FSGGFDINVFQK--VHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
R F G +I + + + + + + +AAV G GGG EL
Sbjct: 88 RVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYEL 147
Query: 117 AMGCHARIAA--PKTQLGLPELT-LGVIPGFGGTQRL--PRLVGLSKAIEMMLLSKSITS 171
A+ C + + LPE+ LGV+PG GG R+ R V +A + + +
Sbjct: 148 ALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRG 207
Query: 172 EEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-------RKPWIRSLHRTDKLGSLSEAR 224
E L+D VV + + + AL++AA+ + + + RTD+ L+
Sbjct: 208 ERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDGLTYKT 267
Query: 225 ---EVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 281
+ + R+ + A +D I + +E + +
Sbjct: 268 LDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAV 327
Query: 282 LVHVFFAQRATSKVPNVTDI 301
VF + +
Sbjct: 328 GTWVFRTEGDARHLLAADAS 347
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 1e-09
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 12/106 (11%)
Query: 90 VVNLIEDCKKPIVAAVE-GLALGGGL-ELAMGCHARI-------AAPKTQLGLPELTLGV 140
+ I+ + + A +E G G ELA + + L E+ G+
Sbjct: 367 TLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNFGL 426
Query: 141 IPGFGGTQRLP-RLVGLSKAIEMML--LSKSITSEEGWKLGLIDAV 183
P RL R ++ ++ + + ++I E +LGL+ A
Sbjct: 427 YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTAS 472
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 2e-44
Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 6/203 (2%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ + + V IT P N + ++ + V +VL G
Sbjct: 4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQC-ETSTVTVVVLEGLPE 61
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
F G D + G + + ++ ++ V G GGL
Sbjct: 62 VFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSA 121
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
IA L EL G+ P L R +G KA M L++K I+ +E + GL
Sbjct: 122 TDIAIADQTASFSLSELLFGLYPA-CVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGL 180
Query: 180 IDAVVTSEELLKVSRLWALDIAA 202
IDA ++L R L +
Sbjct: 181 IDAFDAESDVL--LRKHLLRLRR 201
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 7e-44
Identities = 46/219 (21%), Positives = 76/219 (34%), Gaps = 32/219 (14%)
Query: 13 DGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ 71
D VA IT P NA+ L E A DV I+++G G F GFD++ +
Sbjct: 43 DRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYA 102
Query: 72 KVHGAGDVSLMPDVSVEL----------------------------VVNLIEDCKKPIVA 103
+ + + +V + C KP V
Sbjct: 103 EGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVV 162
Query: 104 AVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
+ G + GG ++A+ IAA ++G P + + +P G +G +A ++
Sbjct: 163 KIHGYCVAGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLL 219
Query: 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202
IT + + GL +L + IAA
Sbjct: 220 FTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAA 258
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 1e-42
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 8/206 (3%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
+ G VA +TL +P NAL+ +V+ L +A+S V+ +VL GG
Sbjct: 8 LVDYAGPAATG-GPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGG 66
Query: 60 RFSGGFDINVFQKVHGAGD-VSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLEL 116
F G D++ + + + E+ ++ I + + P++AA++G GG L
Sbjct: 67 TFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGL 126
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWK 176
C +A P++ L E +GV P LP+L A L + + +
Sbjct: 127 VGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEE 185
Query: 177 LGLIDAVVTSEELLKVSRLWALDIAA 202
+GLI E+L D+
Sbjct: 186 IGLITMAA--EDLDAAIDQLVTDVGR 209
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 5e-22
Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 12/200 (6%)
Query: 1 MAAPRVTMEV----GNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLT 55
A V + V ++TL NAL + +V + + + +VL
Sbjct: 34 FATQNVVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLD 93
Query: 56 GNGGR-FSGGFDINVFQKVHGAGDVSLMPDV----SVELVVN-LIEDCKKPIVAAVEGLA 109
G+G + F G D+ A + E ++ L+ KP++ +G+
Sbjct: 94 GSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIV 153
Query: 110 LGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169
+GGGL L G ++ +++ +PE+T+G+ P GG+ L R+ G + + L + +
Sbjct: 154 MGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG-KMGLFLGLTAYHM 212
Query: 170 TSEEGWKLGLIDAVVTSEEL 189
+ + +GL D + ++
Sbjct: 213 NAADACYVGLADHYLNRDDK 232
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 52/191 (27%), Positives = 87/191 (45%), Gaps = 5/191 (2%)
Query: 2 AAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR 60
AA V + +ITL P NAL + ++ + + ++ + I++ G GG+
Sbjct: 4 AAEEVLLGKKG-CTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGK 62
Query: 61 -FSGGFDINVFQKVHGAGDVSLMPDVSVELVVN-LIEDCKKPIVAAVEGLALGGGLELAM 118
F G DI V + A E ++N + C+KP VA + G+ +GGG+ L++
Sbjct: 63 AFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSV 122
Query: 119 GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLG 178
R+A K +PE +G+ P GG LPRL G + L + + ++ G
Sbjct: 123 HGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQG-KLGYFLALTGFRLKGRDVYRAG 181
Query: 179 LIDAVVTSEEL 189
+ V SE+L
Sbjct: 182 IATHFVDSEKL 192
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 63/412 (15%), Positives = 141/412 (34%), Gaps = 92/412 (22%)
Query: 36 LKDKFEEATSRDDVKAIVLTGN---GGRFSGGFDI------NVFQKVHGAGDVSLMPDVS 86
++D + S++++ I+++ + G F + QK +V L +
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLSKQEEMVQKF--VEEV-LRINYK 92
Query: 87 VELVVNLIEDCKKPIVAAVEGLA----LGGGLELAMGCHARIAAPKTQL--GLPELTLG- 139
L+ + + ++P + + L ++ + P +L L EL
Sbjct: 93 F-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 140 --VIPGFGGTQRLPRLVGLSK---AIEMMLLSKSITSEEG----W-KLGLIDAVVTSEEL 189
+I G G+ G K A+++ LS + + W L + + E +
Sbjct: 152 NVLIDGVLGS-------G--KTWVALDV-CLSYKVQCKMDFKIFWLNLKNCN---SPETV 198
Query: 190 LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQACLD 249
L+ L L RS H ++ + + L+ RL K ++ CL
Sbjct: 199 LE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSK------PYENCLL 248
Query: 250 VIEEGIVHGGYSGVLKEAKVFKELVMLD-TSRGLVHVFFAQRATSKVPNVTDIGLKPRGV 308
V+ ++ AK + + + + L+ T++ VTD L
Sbjct: 249 VLLN----------VQNAKAWN---AFNLSCKILL--------TTRFKQVTDF-LSAATT 286
Query: 309 RKVAVI--GGGLMGSGIAT--AHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTR-- 361
+++ L + + L+ L +EV + + + I ++R +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAESIRDGLATWD 345
Query: 362 --GKLTQDKANNALKMLKGVLDYSEFKD--VDMVIEAVIESVPLKQKIFSEL 409
+ DK ++ VL+ +E++ + + S + + S +
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 36/289 (12%), Positives = 71/289 (24%), Gaps = 97/289 (33%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDV--KAIVLTGNG 58
+ ++ + + + P N L + L +V
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLV-----L----------LNVQNAKAW----- 259
Query: 59 GRFSGGFDINVFQKVHGAGDVSLM--PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLEL 116
F+++ K+ L+ V ++ + L L
Sbjct: 260 ----NAFNLSC--KI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 117 AMGCHARIAAPKTQLGLPELTLGVIP----GFG-----GTQRLPRL--VG---LSKAIEM 162
+ + Q LP L P G V L+ IE
Sbjct: 307 L----LKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 163 ML--LSKSITSEEGWKLGLI--DAVVTSEELLKVSRLWA-------LDIAA--------- 202
L L + + +L + A + + L S +W + +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 203 -RRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ-HQACLD 249
+ K S+ S+ L+ K N H++ +D
Sbjct: 419 KQPKESTISIP------SIY----------LELKVKLENEYALHRSIVD 451
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 41/202 (20%), Positives = 63/202 (31%), Gaps = 56/202 (27%)
Query: 15 VAIITL---INPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINV 69
V + + I A +D+ +AI++ + GGR +I
Sbjct: 10 VYVAQIKGQITSYTYDQ-------FDRYITIA-EQDNAEAIIIELDTPGGRADAMMNI-- 59
Query: 70 FQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE---GLALGGGLELAMGCHARIAA 126
V I+ K P++ V A G +A+G H A
Sbjct: 60 ---------------------VQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMA 98
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVG----------------LSKAIEMMLLSKSIT 170
P T +G LG + P + + A E + S+T
Sbjct: 99 PGTSIGACRPILGYSQNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDLSLT 158
Query: 171 SEEGWKLGLIDAVVTS-EELLK 191
EE K G+I+ V ELLK
Sbjct: 159 PEEALKYGVIEVVARDINELLK 180
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 539 | |||
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 100.0 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 100.0 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 100.0 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 100.0 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 100.0 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 100.0 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.86 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.83 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.81 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.81 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.79 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.78 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.75 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.75 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.74 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.73 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 99.73 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.73 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.72 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.72 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.72 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.71 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.71 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.7 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.65 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.63 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.63 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.63 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.62 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.62 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.62 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.62 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.61 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.6 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.6 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.6 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.59 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.58 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.58 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.58 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.58 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.57 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.57 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.55 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.55 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.55 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.55 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.55 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.54 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.54 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.53 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.52 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.52 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.51 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.51 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.51 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.5 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.49 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.49 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.49 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.48 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.47 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.47 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.47 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.46 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.45 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.42 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.42 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.41 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.37 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.37 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.36 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.36 | |
| 3ctv_A | 110 | HBD-10, 3-hydroxyacyl-COA dehydrogenase; structura | 99.35 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.32 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.32 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.28 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.27 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.26 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.25 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.25 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.25 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.24 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.2 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.17 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.14 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 99.14 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.11 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 99.09 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.68 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 99.06 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.06 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 99.02 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 98.99 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 98.98 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 98.88 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.87 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.85 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 98.84 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 98.81 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.79 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 98.76 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.75 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.74 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.74 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.74 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.73 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.72 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.7 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.7 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.67 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 98.66 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.65 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.62 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 98.61 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.6 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.6 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.59 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.58 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.58 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.56 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 98.56 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 98.52 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.52 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.48 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 98.47 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.47 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.46 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 98.45 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.45 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.44 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 98.44 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.43 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 98.43 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 98.42 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.41 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 98.4 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.39 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 98.37 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.37 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.36 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.36 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.35 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.35 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.34 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.34 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.34 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 98.32 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.31 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.31 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.31 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.29 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.28 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.28 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.26 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.26 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.25 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 98.25 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.25 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.24 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 98.23 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.22 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.18 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.17 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 98.17 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 98.16 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 98.14 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.14 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 98.13 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.11 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.09 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.09 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.05 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.0 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.99 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 97.98 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 97.98 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.96 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.93 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.88 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.88 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.88 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 97.86 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.85 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.83 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.82 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.81 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.8 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.74 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.72 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.69 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.67 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.66 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.65 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.63 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.59 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.57 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 97.56 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.56 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.55 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.55 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.52 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.51 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.46 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.45 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.44 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 97.43 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.43 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.43 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.43 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.42 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 97.39 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 97.39 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.38 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.37 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.35 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.35 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.34 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.33 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.32 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.32 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.31 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.31 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.3 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.3 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.3 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.29 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.24 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.24 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.23 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.21 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.2 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.19 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.18 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.17 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.16 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 97.16 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.13 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.11 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.1 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.1 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.07 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.06 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.06 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 97.04 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.04 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.03 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.02 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.02 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.01 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.99 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.97 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.94 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.93 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.93 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.87 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.86 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.86 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.85 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.82 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.81 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 96.74 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 96.73 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.72 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.71 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.71 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 96.69 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.69 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.67 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 96.66 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.64 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.64 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.62 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.62 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 96.61 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 96.56 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 96.56 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.53 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.51 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.46 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.41 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.4 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.4 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.35 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 96.34 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.34 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.3 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.24 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 96.22 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.21 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.21 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 96.2 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 96.17 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.17 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.16 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.14 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 96.1 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.05 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 96.03 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.03 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.02 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.0 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 95.99 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 95.98 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 95.98 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 95.95 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.95 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.93 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 95.9 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.87 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 95.85 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 95.83 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.78 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.77 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.73 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 95.72 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.71 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 95.7 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.64 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 95.63 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.63 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 95.59 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.51 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.51 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.5 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.49 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.48 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 95.45 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.41 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.41 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 95.33 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 95.32 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.32 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 95.31 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 95.29 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 95.27 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 95.25 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 95.24 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.23 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.18 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 95.15 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 95.13 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 95.1 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 95.1 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.02 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 95.02 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.0 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.0 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 94.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.91 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 94.89 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 94.88 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 94.87 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 94.82 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 94.81 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 94.79 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.77 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 94.72 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.71 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 94.68 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 94.67 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 94.67 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.56 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 94.56 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 94.49 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 94.3 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 94.29 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.25 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 94.25 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 94.24 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.19 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 94.19 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.18 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 94.17 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 94.16 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 94.14 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 94.07 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.04 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 94.02 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 94.01 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 93.99 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 93.96 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 93.93 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.92 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 93.9 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 93.88 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 93.88 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 93.85 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 93.83 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 93.82 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 93.77 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 93.76 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 93.7 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.69 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 93.67 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 93.67 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 93.67 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 93.66 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 93.6 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 93.6 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 93.58 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 93.58 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 93.56 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 93.53 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.53 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 93.5 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 93.44 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 93.41 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 93.4 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 93.4 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 93.39 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 93.36 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.34 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 93.34 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 93.31 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 93.28 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 93.25 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 93.25 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 93.25 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 93.24 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 93.24 |
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-101 Score=849.65 Aligned_cols=518 Identities=34% Similarity=0.550 Sum_probs=465.3
Q ss_pred EEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHH
Q 009256 8 MEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSV 87 (539)
Q Consensus 8 ~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 87 (539)
+++ +|+|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||+|+.||+|+||+++....... ...
T Consensus 25 ~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~~~-------~~~ 96 (742)
T 3zwc_A 25 LRL-PHSLAMIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGL-------ALG 96 (742)
T ss_dssp EEC-STTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCSCS-------HHH
T ss_pred EEe-eCCEEEEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccChhH-------HHH
Confidence 455 799999999999999999999999999999999999999999999999999999999986543221 234
Q ss_pred HHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCC
Q 009256 88 ELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSK 167 (539)
Q Consensus 88 ~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~ 167 (539)
+++ ++|.++||||||+|||+|+|||++|+|+||+|||+++++|++||+++|++|++|++++|||++|..+|++|++||+
T Consensus 97 ~~~-~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~ltG~ 175 (742)
T 3zwc_A 97 SLV-DEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGK 175 (742)
T ss_dssp HHH-HHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred HHH-HHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHHcCC
Confidence 666 7799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHHHH
Q 009256 168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQAC 247 (539)
Q Consensus 168 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 247 (539)
+++|+||+++||||+|+|++. .+++.++|+++++.++...+...+... ................+++..+++|+..+
T Consensus 176 ~i~a~eA~~~GLv~~vv~~d~-~~~A~~~A~~ia~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~~~~A~~~~ 252 (742)
T 3zwc_A 176 YLSADEALRLGILDAVVKSDP-VEEAIKFAQKIIDKPIEPRRIFNKPVP--SLPNMDSVFAEAIAKVRKQYPGVLAPETC 252 (742)
T ss_dssp CEEHHHHHHHTSCSEEESSCH-HHHHHHHHHHHTTSCSGGGCGGGSCCC--CCTTHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chhHHHHHHcCCccEecCchh-hHHHHHHHHHHhcCCchhhhhhccccc--ccchhhhhHHHHHHHHhhhccchhHHHHH
Confidence 999999999999999998875 578899999999998765544332221 11122233344455566788899999999
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCC---cCCCCCCCcceEEEEcCCCCcHHHH
Q 009256 248 LDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT---DIGLKPRGVRKVAVIGGGLMGSGIA 324 (539)
Q Consensus 248 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~---~~~~~~~~~~kI~iIG~G~mG~~iA 324 (539)
+++++.+...+++++++.|.+.|.+++.|+|+++++++|+++|+++|.++.. ..+..+++|+||+|||+|.||++||
T Consensus 253 ~~~v~~~~~~~~~~gl~~E~~~F~~l~~s~~~k~~~~aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGaG~MG~gIA 332 (742)
T 3zwc_A 253 VRSIQASVKHPYEVGIKEEEKLFMYLRASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIA 332 (742)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcccccccccccccccCcccccEEEEEcccHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876432 2344567899999999999999999
Q ss_pred HHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccCChhHHHH
Q 009256 325 TAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQK 404 (539)
Q Consensus 325 ~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe~~~~~~~ 404 (539)
..++.+|++|+++|++++.++...+.+...+...+.++..+.. .....+++++++++++++||+|||+|+|++++|++
T Consensus 333 ~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aDlVIEAV~E~l~iK~~ 410 (742)
T 3zwc_A 333 ISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQ--ASAKPKLRFSSSTKELSTVDLVVEAVFEDMNLKKK 410 (742)
T ss_dssp HHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEEEESCGGGGGSCSEEEECCCSCHHHHHH
T ss_pred HHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccch--hhhhhhhcccCcHHHHhhCCEEEEeccccHHHHHH
Confidence 9999999999999999999999999988888777766544322 12235678888888999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeE
Q 009256 405 IFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPV 484 (539)
Q Consensus 405 ~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v 484 (539)
+|++|++++++++|++||||++++++++..+.+|+||+|+||||||+.+++|||++++.|++++++++..+.+.+||.||
T Consensus 411 vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV 490 (742)
T 3zwc_A 411 VFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 490 (742)
T ss_dssp HHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCCCceEEEecCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 485 VVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 485 ~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
+++|.|||++||++.++++|+++++++|+++++||++++++|+|||||+++|.++
T Consensus 491 ~vkd~pGFi~NRi~~~~~~ea~~l~~eG~~~~~id~a~~~~G~pmGPf~l~D~vG 545 (742)
T 3zwc_A 491 VVGNCYGFVGNRMLAPYYNQGFFLLEEGSKPEDVDGVLEEFGFKMGPFRVSDLAG 545 (742)
T ss_dssp ECCCSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHC
T ss_pred ccCCCCCccHHHHhhHHHHHHHHHHHcCCCHHHHHHHHHHcCCCCChHHHHHHhC
Confidence 9999999999999999999999999999999999999988999999999999764
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-95 Score=807.55 Aligned_cols=534 Identities=60% Similarity=0.955 Sum_probs=462.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCCchhhhhhcCCC--
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG-- 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~-- 77 (539)
|+++.+.++..+++|++||||||+.|+||.+|+++|.+++++++.|+++|+||||| |+ .||+|+|++++.......
T Consensus 4 ~~~~~i~~~~~~~~va~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~ 82 (725)
T 2wtb_A 4 RTKGKTVMEVGGDGVAVITLINPPVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQKGNVK 82 (725)
T ss_dssp ---CEEEEEECTTSEEEEEEECTTTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC------------
T ss_pred CcCCeEEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccchhhh
Confidence 55667889832789999999999889999999999999999999999999999999 76 999999999985422110
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
....+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~ 161 (725)
T 2wtb_A 83 EPKAGYISIDIIT-DLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLT 161 (725)
T ss_dssp CCSSSHHHHHCCC-CCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHH-HHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHH
Confidence 0112222334445 568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc--Cch-hhhhhhcccccCChHHHHHHHHHHHHHH
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR--RKP-WIRSLHRTDKLGSLSEAREVLKLARLQA 234 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (539)
+|++|++||++++|+||+++||||+|||++++.+++.+++++++.. |+. +.+. . ...+........+..++...
T Consensus 162 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~~~~~~~--~-~~~~~~~~~~~~~~~a~~~~ 238 (725)
T 2wtb_A 162 KALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIVGRRKPWVSSVSK--T-DKLPPLGEAREILTFAKAQT 238 (725)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHHTTSSCCCCGGGC--C-TTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHHhcCCChhhhhhh--c-cccCccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 322 2220 0 00112222333555666665
Q ss_pred HHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcceEEEE
Q 009256 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVI 314 (539)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~kI~iI 314 (539)
++....||++..+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++|.++..+.+..++.|+||+||
T Consensus 239 ~~~~~g~pA~~~~k~~~~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~~~~~~~~~~kV~VI 318 (725)
T 2wtb_A 239 LKRAPNMKHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAII 318 (725)
T ss_dssp HHHCTTCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEE
T ss_pred HHhccCCcHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcchhHHHHHHHhhhhhhhcccCCCCccccccccCcEEEEE
Confidence 54444599999999999999999999999999999999999999999999999999999988632113345678899999
Q ss_pred cCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEc
Q 009256 315 GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEA 394 (539)
Q Consensus 315 G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~a 394 (539)
|+|.||++||..|+++||+|++||++++.++.+.+.+++.+++++++|.++..+.....++++.+++++++++||+||+|
T Consensus 319 GaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIea 398 (725)
T 2wtb_A 319 GGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESFRDVDMVIEA 398 (725)
T ss_dssp CCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGGTTCSEEEEC
T ss_pred cCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHHCCCCEEEEc
Confidence 99999999999999999999999999999999988888889999999988877777777889988888889999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHH
Q 009256 395 VIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMT 474 (539)
Q Consensus 395 vpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~ 474 (539)
+|++.++|+.+++++.+++++++||+||||++++++++..+.+|++++|+|||+|++.++++|+++++.|++++++++.+
T Consensus 399 Vpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~ 478 (725)
T 2wtb_A 399 VIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLD 478 (725)
T ss_dssp CCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCCcccCceEEEEECCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 475 VGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 475 l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
+++.+|+.|+++++.+||++||++.++++|++.++++|+++++||+++.++|+|||||+++|.++
T Consensus 479 l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~e~id~~~~~~g~p~Gp~~l~D~vG 543 (725)
T 2wtb_A 479 VGKKIKKTPVVVGNCTGFAVNRMFFPYTQAAMFLVECGADPYLIDRAISKFGMPMGPFRLCDLVG 543 (725)
T ss_dssp HHHHTTCEEEEEESSTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHC
T ss_pred HHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999988999999999999754
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-94 Score=801.68 Aligned_cols=532 Identities=30% Similarity=0.498 Sum_probs=469.8
Q ss_pred CCcEEEEEecCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCCchhhhhhcCCC--
Q 009256 3 APRVTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAG-- 77 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~-- 77 (539)
.+.+.++..+++|++||||||+ .|+||.+|+++|.+++++++.|+++|+||||| |+ .||+|+|++++.......
T Consensus 5 ~~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~~~~~ 83 (715)
T 1wdk_A 5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFKLPDA 83 (715)
T ss_dssp CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTTSCHH
T ss_pred CCeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhcccCCHH
Confidence 3568888327899999999994 69999999999999999999999999999999 76 999999999986532111
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
....+....++++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 84 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~ 162 (715)
T 1wdk_A 84 ELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD 162 (715)
T ss_dssp HHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence 1111223345666 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc--CchhhhhhhcccccCChHHHHH-HHHHHHH-H
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR--RKPWIRSLHRTDKLGSLSEARE-VLKLARL-Q 233 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~ 233 (539)
+|++|++||++++|+||+++||||+|||++++.+++.+++++++.. |....+.. ...+...-..+.. .+..+++ .
T Consensus 163 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~k~~~ 241 (715)
T 1wdk_A 163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQP-KLEKLKLNAIEQMMAFETAKGFV 241 (715)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGG-GGSCCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhccCCcchhccc-ccCccccCchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 41111100 0000000001111 1333333 3
Q ss_pred HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcceEEE
Q 009256 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAV 313 (539)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~kI~i 313 (539)
.+++..+|||+..+|++++.+...+++++++.|.+.|..++.|+|+++++++|++||+++|.++++. + .+++++||+|
T Consensus 242 ~~~~~g~~~A~~~~k~~v~~~~~~~~~~~l~~E~~~~~~l~~s~~~~~~~~aF~~kr~~~~~~~~~~-~-~~~~i~kV~V 319 (715)
T 1wdk_A 242 AGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVYD-K-IAKDVKQAAV 319 (715)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCSSEEE
T ss_pred HHhcccCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhhhhccccCCC-C-ccccCCEEEE
Confidence 5688899999999999999999999999999999999999999999999999999999998775322 2 4567889999
Q ss_pred EcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEE
Q 009256 314 IGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIE 393 (539)
Q Consensus 314 IG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~ 393 (539)
||+|+||++||..|+++||+|++||++++.++.+.+.++..+++++++|.++..+.....++++.+++++++++||+||+
T Consensus 320 IGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~~~aDlVIe 399 (715)
T 1wdk_A 320 LGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNVDLVVE 399 (715)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGCSEEEE
T ss_pred ECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHHHCCCCEEEE
Confidence 99999999999999999999999999999999988889889999999999998888878888998888888999999999
Q ss_pred cccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHH
Q 009256 394 AVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLM 473 (539)
Q Consensus 394 avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~ 473 (539)
|+|++.++|+.+++++.+++++++||+||||++++++++..+.+|++++|+|||+|++.++++|+++++.|++++++.+.
T Consensus 400 aV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~ 479 (715)
T 1wdk_A 400 AVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTV 479 (715)
T ss_dssp CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCCcccCceEEEEECCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 474 TVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 474 ~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
++++.+|+.++++++.+||++||++.++++|++.++++|+++++||+++.++|+|||||+++|.++
T Consensus 480 ~l~~~lGk~~v~v~d~~Gfi~Nril~~~~~Ea~~l~~~G~~~~~id~~~~~~G~p~Gp~~l~D~vG 545 (715)
T 1wdk_A 480 AYAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVG 545 (715)
T ss_dssp HHHHHTTCEEEEEESCTTTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHC
T ss_pred HHHHHhCCEeEEEcCCCChhhhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCCCCHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999988999999999999754
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-59 Score=455.11 Aligned_cols=250 Identities=28% Similarity=0.373 Sum_probs=229.9
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
|.+|+ +|+|++||||||+ +|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...... ...+..
T Consensus 2 vl~E~-~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~--~~~~~~ 78 (254)
T 3hrx_A 2 VLKER-QDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPD--YEAHLR 78 (254)
T ss_dssp EEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCC--HHHHTH
T ss_pred eEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchh--hHHHHH
Confidence 67888 7999999999994 7999999999999999999999999999999999999999999998653322 223334
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
..+.++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.++|++|++
T Consensus 79 ~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~lll 157 (254)
T 3hrx_A 79 RYNRVV-EALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLL 157 (254)
T ss_dssp HHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHH-HHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHhh
Confidence 455666 7799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
||++|+|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 158 tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 202 (254)
T 3hrx_A 158 LSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYA----------------------------------- 202 (254)
T ss_dssp HCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-----------------------------------
T ss_pred cCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999975443
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.|+|++||++||+|||+|++.
T Consensus 203 -~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 252 (254)
T 3hrx_A 203 -LTKKLLLETYRLSLTEALALEAVLQGQAGQTQDHEEGVRAFREKRPPRFQ 252 (254)
T ss_dssp -HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 45788889999999999999999999999999999999999999999864
|
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=456.86 Aligned_cols=254 Identities=25% Similarity=0.326 Sum_probs=225.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc---c
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---V 79 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---~ 79 (539)
++|.+++ +|+|++||||||+ +|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++........ .
T Consensus 15 e~il~~~-~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 93 (274)
T 4fzw_C 15 EFILSHV-EKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLG 93 (274)
T ss_dssp -CEEEEE-ETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHH
T ss_pred ccEEEEE-ECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHH
Confidence 5788999 7999999999996 699999999999999999999999999999999999999999998764332211 1
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+....+.++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 94 ~~~~~~~~~l~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 172 (274)
T 4fzw_C 94 MSVERFYNPLV-RRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARA 172 (274)
T ss_dssp HHHHHTHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHH-HHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhHHHH
Confidence 12233344566 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++|++||++++|+||+++||||+|||++++.+++.++|++++..||.+++
T Consensus 173 ~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 222 (274)
T 4fzw_C 173 MGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLG------------------------------ 222 (274)
T ss_dssp HHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred HHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.....+++++++.|...+..++.|+|++|+++||+|||+|++.
T Consensus 223 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Egv~AF~eKR~P~f~ 272 (274)
T 4fzw_C 223 ------LIKQAINSAETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFT 272 (274)
T ss_dssp ------HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHC-CCCCCC
T ss_pred ------HHHHHHHHhhhCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence 45788888889999999999999999999999999999999999999864
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=452.84 Aligned_cols=252 Identities=30% Similarity=0.450 Sum_probs=230.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.+.+++ +|+|++||||||+ +|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... ..
T Consensus 4 ms~l~ve~-~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~---~~ 79 (258)
T 4fzw_A 4 MSELIVSR-QQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLA---AT 79 (258)
T ss_dssp -CEEEEEE-ETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHH---HH
T ss_pred CCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhh---hH
Confidence 34688999 7999999999996 6999999999999999999999999999999999999999999998653211 11
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 80 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 158 (258)
T 4fzw_A 80 LNDTRPQLW-ARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASK 158 (258)
T ss_dssp HTCSHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred HHhHHHHHH-HHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHH
Confidence 222334566 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
|++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 159 llltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------------- 206 (258)
T 4fzw_A 159 MVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQ-------------------------------- 206 (258)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH--------------------------------
T ss_pred HHHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999986543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+++++....+++++++.|.+.+..++.|+|++|++++|+|||+|++.
T Consensus 207 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 256 (258)
T 4fzw_A 207 ----AAKQALRQSQEVALQAGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFK 256 (258)
T ss_dssp ----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCC
Confidence 45788888889999999999999999999999999999999999999864
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-57 Score=443.08 Aligned_cols=256 Identities=27% Similarity=0.465 Sum_probs=232.3
Q ss_pred CCCCcEEEE-EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC
Q 009256 1 MAAPRVTME-VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~~v~~~-~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~ 77 (539)
|+|++|.++ . +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++..... .
T Consensus 5 m~~~~v~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~ 82 (265)
T 3kqf_A 5 LQLQNISVDYA-TPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNE-E 82 (265)
T ss_dssp --CCSEEEECC-STTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCH-H
T ss_pred ccCCeEEEEEe-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCH-H
Confidence 678899999 7 8999999999996 6999999999999999999999999999999999 99999999999865321 1
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
....+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 161 (265)
T 3kqf_A 83 QVRHAVSMIRTTM-EMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 161 (265)
T ss_dssp HHHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 1222333455666 779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------- 213 (265)
T 3kqf_A 162 RAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVR---------------------------- 213 (265)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999875443
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.+...+++++++.|...+..++.|+|++|++++|+|||+|++.
T Consensus 214 --------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3kqf_A 214 --------LAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRTPMYK 263 (265)
T ss_dssp --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTTSCCCCC
T ss_pred --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 45788888888999999999999999999999999999999999998864
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-57 Score=442.71 Aligned_cols=255 Identities=38% Similarity=0.620 Sum_probs=230.8
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
++++.++. +++|++||||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++...........+
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (261)
T 3pea_A 5 LKFLSVRV-EDHIAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATEL 83 (261)
T ss_dssp CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHH
T ss_pred ccceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHH
Confidence 46799999 79999999999966999999999999999999999999999999999999999999998654321111223
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
....+.++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+++
T Consensus 84 ~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a~~l 162 (261)
T 3pea_A 84 AQLGQVTF-ERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKAKACEM 162 (261)
T ss_dssp HHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHH
Confidence 33344556 67999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 163 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 209 (261)
T 3pea_A 163 MLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATAR--------------------------------- 209 (261)
T ss_dssp HHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------------
T ss_pred HHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999875443
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 210 ---~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f~ 259 (261)
T 3pea_A 210 ---AVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRKPSFS 259 (261)
T ss_dssp ---HHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCC
T ss_pred ---HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 45778888888889999999999999999999999999999999999863
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-57 Score=441.89 Aligned_cols=257 Identities=21% Similarity=0.310 Sum_probs=230.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|++++|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.........
T Consensus 1 M~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 79 (268)
T 3i47_A 1 MSLSDLLYEI-QDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEE 79 (268)
T ss_dssp -CCCSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHH
T ss_pred CCCCEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHH
Confidence 8999999999 8999999999996 5999999999999999999999999999999999999999999998764322111
Q ss_pred --cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 80 --SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 80 --~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
........+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|++++|..
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~ 157 (268)
T 3i47_A 80 ENLEDSLVLGNLM-YSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGER 157 (268)
T ss_dssp HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHH
Confidence 11122344566 67999999999999999999999999999999999999999999999999999987 799999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++|++||++|+|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 158 ~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 209 (268)
T 3i47_A 158 AAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVK---------------------------- 209 (268)
T ss_dssp HHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999986543
Q ss_pred CCCchhHHHHHHHHHHhhcCCchh-HHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYS-GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~-~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|++++.....++++ .++.|...+..++.|+|++|++++|+|||+|++.+
T Consensus 210 --------~~K~~l~~~~~~~l~~~~~~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~ 261 (268)
T 3i47_A 210 --------NSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEIPNWNE 261 (268)
T ss_dssp --------HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTCCCTTC-
T ss_pred --------HHHHHHHhhhcCChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 4577888888888888 78999999999999999999999999999999754
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-57 Score=444.44 Aligned_cols=255 Identities=24% Similarity=0.386 Sum_probs=229.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+++.|.++. +++|++||||||+ .|+||.+|+++|.++++++ |+++|+|||||.|++||+|+|++++...... ..
T Consensus 13 m~~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-~~ 88 (275)
T 3hin_A 13 ADPSTLVVDT-VGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRERDAT-EG 88 (275)
T ss_dssp CCGGGEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCCCCHH-HH
T ss_pred CCCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhccChh-hH
Confidence 5677899999 7999999999996 7999999999999999998 5799999999999999999999988652211 11
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
..+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 89 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 167 (275)
T 3hin_A 89 LVHSQTWHRVF-DKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARM 167 (275)
T ss_dssp HHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHH
Confidence 12223445666 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 168 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~------------------------------ 217 (275)
T 3hin_A 168 ADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNF------------------------------ 217 (275)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred HHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+++++....+++++++.|...+..++.|+|++|++++|+|||+|++..
T Consensus 218 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~ 268 (275)
T 3hin_A 218 ------AVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKTAKVRE 268 (275)
T ss_dssp ------HHHTHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHC--
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence 457788888888999999999999999999999999999999999998754
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=439.96 Aligned_cols=254 Identities=32% Similarity=0.450 Sum_probs=231.4
Q ss_pred CCCCcEEEEEecCc-EEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MAAPRVTMEVGNDG-VAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~-v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+++.+.++. +++ |++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.......
T Consensus 6 m~~~~i~~~~-~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~- 83 (263)
T 3moy_A 6 TTYTTIATSR-PVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQ- 83 (263)
T ss_dssp CCCSSEEEEC-CSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHH-
T ss_pred CCCCeEEEEE-eCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchh-
Confidence 6788899999 666 9999999996 59999999999999999999999999999999999999999999986532111
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
.+......++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 84 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 160 (263)
T 3moy_A 84 --ARERNLLSGW-DSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAK 160 (263)
T ss_dssp --HHHTTTTHHH-HHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHH
T ss_pred --HHHHHHHHHH-HHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHH
Confidence 1122233556 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|+++++||++++|+||+++||||+|+|++++.+++.++|++|+..||.+++
T Consensus 161 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 211 (263)
T 3moy_A 161 AMDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGR----------------------------- 211 (263)
T ss_dssp HHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999976543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.....+++++++.|...+..++.|+|++|++++|+|||+|++.
T Consensus 212 -------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~p~f~ 261 (263)
T 3moy_A 212 -------AVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRTPEFT 261 (263)
T ss_dssp -------HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence 45788888888899999999999999999999999999999999999864
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-56 Score=441.52 Aligned_cols=254 Identities=30% Similarity=0.491 Sum_probs=229.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+++.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 22 m~~~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-- 98 (278)
T 3h81_A 22 MTYETILVER-DQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFAD-- 98 (278)
T ss_dssp -CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHH--
T ss_pred CCCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhh--
Confidence 6788899999 7999999999996 69999999999999999999999999999999999999999999986532111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
......... + .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 99 ~~~~~~~~~-~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A 176 (278)
T 3h81_A 99 AFTADFFAT-W-GKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKA 176 (278)
T ss_dssp HHHHTTTGG-G-HHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH-H-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHH
Confidence 001111112 4 56899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 177 ~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------ 226 (278)
T 3h81_A 177 MDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAAR------------------------------ 226 (278)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred HHHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999986543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 227 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~ 276 (278)
T 3h81_A 227 ------MAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRAPQFT 276 (278)
T ss_dssp ------HHHHHHHHTTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred ------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 45788888888899999999999999999999999999999999999864
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-56 Score=434.82 Aligned_cols=254 Identities=22% Similarity=0.345 Sum_probs=218.8
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhh---hhcC
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQ---KVHG 75 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~---~~~~ 75 (539)
|| ++.|.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++. ....
T Consensus 1 Ms~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 79 (266)
T 3fdu_A 1 MSLHPHLNANL-EGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPN 79 (266)
T ss_dssp -CCCTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCC
T ss_pred CCCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccc
Confidence 65 57899999 8999999999996 79999999999999999999999999999999999999999999987 3322
Q ss_pred CCcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
.. ........+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 80 ~~--~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 156 (266)
T 3fdu_A 80 AG--PAGQVPPFVLL-KSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAG 156 (266)
T ss_dssp CS--CGGGSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHC
T ss_pred hh--hHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhC
Confidence 11 12233455666 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|+++++||++++|+||+++||||+||| ++.+++.++|++|++.||.+++
T Consensus 157 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~-------------------------- 208 (266)
T 3fdu_A 157 YHKAAELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLK-------------------------- 208 (266)
T ss_dssp HHHHHHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHH--------------------------
T ss_pred HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999 8999999999999999986543
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~ 297 (539)
.+|+.++... .+++++++.|...+..++.|+|++|++++|+|||+|++.+.
T Consensus 209 ----------~~K~~l~~~~-~~l~~~l~~e~~~~~~~~~s~d~~eg~~aF~ekR~p~~~~~ 259 (266)
T 3fdu_A 209 ----------QTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAFMQKRQPDFSQE 259 (266)
T ss_dssp ----------HHHHHHTTTH-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHC----------
T ss_pred ----------HHHHHHHhhh-ccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 3455666554 45788999999999999999999999999999999998653
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=437.28 Aligned_cols=257 Identities=21% Similarity=0.304 Sum_probs=229.9
Q ss_pred CCCCcEEEEEec--CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC
Q 009256 1 MAAPRVTMEVGN--DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~~v~~~~~~--~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~ 77 (539)
|+++ |.++. + ++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 22 m~~~-v~~~~-~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~ 99 (286)
T 3myb_A 22 MSEP-LLLQD-RDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSRE 99 (286)
T ss_dssp --CC-SEEEE-ECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHH
T ss_pred Ccee-EEEEE-ecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHH
Confidence 5555 88888 7 999999999996 59999999999999999999999999999999999999999999987622111
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
....+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|..
T Consensus 100 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~ 177 (286)
T 3myb_A 100 YYEKLFARCTDVM-LAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRK 177 (286)
T ss_dssp HHHHHHHHHHHHH-HHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHH
Confidence 1122333445666 67999999999999999999999999999999999999999999999999 788899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 178 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------- 229 (286)
T 3myb_A 178 AAFEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVA---------------------------- 229 (286)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999875443
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~ 297 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++.+.
T Consensus 230 --------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~aFlekr~p~f~g~ 281 (286)
T 3myb_A 230 --------MGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRRPEWHTP 281 (286)
T ss_dssp --------HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTSCCCCCCC
T ss_pred --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCC
Confidence 4577888888889999999999999999999999999999999999987653
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-56 Score=435.89 Aligned_cols=256 Identities=21% Similarity=0.305 Sum_probs=224.3
Q ss_pred CCCCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCc-ccCCCchhhhh--h-cC
Q 009256 1 MAAPRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF-SGGFDINVFQK--V-HG 75 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F-~aG~Dl~~~~~--~-~~ 75 (539)
||+++|.++. +++|++|||||| +.|+||.+|+.+|.++++.++.|+++|+|||||.|+.| |+|+|++++.. . ..
T Consensus 1 Ms~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~ 79 (263)
T 3lke_A 1 MSLSYVHTEI-QNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQS 79 (263)
T ss_dssp --CCSEEEEE-CSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSS
T ss_pred CCCcEEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCC
Confidence 8999999999 899999999999 57999999999999999999999999999999999999 99999999876 2 11
Q ss_pred CCcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
......+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 80 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG 158 (263)
T 3lke_A 80 DVRLREVLHVLNHCV-LEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIG 158 (263)
T ss_dssp SHHHHHHHHHHHHHH-HHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhC
Confidence 111222333445666 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecC-cchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVT-SEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~-~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (539)
..+|+++++||++++|+||+++||||+||| ++++.+++.++|++|++.||.+++
T Consensus 159 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~------------------------- 213 (263)
T 3lke_A 159 YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIA------------------------- 213 (263)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 999999999999999999999999999999 999999999999999999986543
Q ss_pred HHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++.+|+||+++.|
T Consensus 214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~e~~~~~~~~~~~~~ 262 (263)
T 3lke_A 214 -----------ATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEALVEGHHHHH 262 (263)
T ss_dssp -----------HHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHC--------
T ss_pred -----------HHHHHHHHhhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccCCCCC
Confidence 4567788777778899999999999999999999999999999998764
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=437.76 Aligned_cols=255 Identities=24% Similarity=0.347 Sum_probs=224.8
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc----
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD---- 78 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~---- 78 (539)
..+.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 24 ~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~ 102 (290)
T 3sll_A 24 FVLVDRP-RPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQP 102 (290)
T ss_dssp CEEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred eEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccch
Confidence 4577888 7999999999996 799999999999999999999999999999999999999999999865432211
Q ss_pred --ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCC-cchhhccccccC
Q 009256 79 --VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPG-FGGTQRLPRLVG 155 (539)
Q Consensus 79 --~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~-~g~~~~l~r~vG 155 (539)
...+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|+|++|
T Consensus 103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~vG 181 (290)
T 3sll_A 103 TIALRSMELLDEVI-LTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIG 181 (290)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHhC
Confidence 112233445666 6799999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|+++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 182 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------- 235 (290)
T 3sll_A 182 TSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIE-------------------------- 235 (290)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999986543
Q ss_pred HhCCCchhHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHh-CCHHHHhHHHHHHhhhhccCCC
Q 009256 236 KTAPNMPQHQACLDVIEEGIV-HGGYSGVLKEAKVFKELV-MLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~l~~e~~~~~~~~-~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++.... .+++++++.|...+..++ .|+|++|++.+|+|||+|++.+
T Consensus 236 ----------~~K~~l~~~~~~~~l~~~l~~e~~~~~~~~~~s~d~~eg~~AFlekR~P~f~g 288 (290)
T 3sll_A 236 ----------LTKRTIWSGLDAASLESHMHQEGLGQLYVRLLTDNFEEATAARKEKRPAEFRD 288 (290)
T ss_dssp ----------HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTSCCCCCS
T ss_pred ----------HHHHHHHhhcccCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 45778888888 899999999999999999 9999999999999999998754
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=430.24 Aligned_cols=248 Identities=23% Similarity=0.317 Sum_probs=226.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.+. .
T Consensus 5 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-------~ 76 (255)
T 3p5m_A 5 MNGISVEH-DGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTA-------G 76 (255)
T ss_dssp BTTEEEEE-ETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHH-------H
T ss_pred CceEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcch-------H
Confidence 34689999 7999999999996 6999999999999999999999999999999999999999999987631 2
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+....++++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 77 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 155 (255)
T 3p5m_A 77 AADAANRVV-RAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSR 155 (255)
T ss_dssp HHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 334455666 7799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 203 (255)
T 3p5m_A 156 MAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFG-------------------------------- 203 (255)
T ss_dssp HHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999886543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 204 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 253 (255)
T 3p5m_A 204 ----WTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRERRTPNFR 253 (255)
T ss_dssp ----HHHHHHHHHHCTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCC
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 45778888888899999999999999999999999999999999998863
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-56 Score=437.49 Aligned_cols=256 Identities=24% Similarity=0.333 Sum_probs=228.5
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+ ++.|.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|+.||+|+|++++........
T Consensus 5 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 83 (265)
T 3swx_A 5 MSDYETLRIRR-DGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA 83 (265)
T ss_dssp --CCSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--C
T ss_pred CCCCceEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchh
Confidence 54 67899999 7999999999996 699999999999999999999999999999999999999999999876432211
Q ss_pred ccccchHHHHHHHHHH-HhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 79 VSLMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i-~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
..+.....+.+ +++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 84 -~~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 161 (265)
T 3swx_A 84 -SLTPEGGINPW-QVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWG 161 (265)
T ss_dssp -CCCCTTCCCTT-CCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHH-HHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHH
Confidence 11222222334 557 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|+++++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------- 213 (265)
T 3swx_A 162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQ---------------------------- 213 (265)
T ss_dssp HHHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred HHHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999876543
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 214 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3swx_A 214 --------ATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAFLSRTTAEFV 263 (265)
T ss_dssp --------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTCCCCCC
T ss_pred --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 45677888888889999999999999999999999999999999998864
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-55 Score=434.98 Aligned_cols=256 Identities=25% Similarity=0.358 Sum_probs=231.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc--
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV-- 79 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~-- 79 (539)
++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus 16 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 94 (279)
T 3g64_A 16 WRHLRVEI-TDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTAR 94 (279)
T ss_dssp CSSEEEEE-ETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHH
T ss_pred CCeEEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhH
Confidence 46799999 7999999999996 6999999999999999999999999999999999999999999998764432211
Q ss_pred -cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCC-CCcchhhccccccCHH
Q 009256 80 -SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVI-PGFGGTQRLPRLVGLS 157 (539)
Q Consensus 80 -~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~-p~~g~~~~l~r~vG~~ 157 (539)
..+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|+|++|..
T Consensus 95 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~ 173 (279)
T 3g64_A 95 LLDFNRMTGQVV-RAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG 173 (279)
T ss_dssp HHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence 12223345566 67999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 225 (279)
T 3g64_A 174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHA---------------------------- 225 (279)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999976543
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++..
T Consensus 226 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~g 276 (279)
T 3g64_A 226 --------QTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEKRPPKWQG 276 (279)
T ss_dssp --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCCCC
T ss_pred --------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence 457788888888999999999999999999999999999999999988643
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-56 Score=436.14 Aligned_cols=254 Identities=23% Similarity=0.327 Sum_probs=229.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 6 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 84 (265)
T 3qxz_A 6 VTELHEEI-RDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPD 84 (265)
T ss_dssp CCEEEEEE-ETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSC
T ss_pred cceEEEEE-ECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHH
Confidence 46788999 7999999999996 699999999999999999999999999999999999999999999876432221111
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+.. ++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 85 ~~~--~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 161 (265)
T 3qxz_A 85 FSA--SPVQ-PAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAE 161 (265)
T ss_dssp CCS--CCSS-SCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHHHHH
T ss_pred HHH--HHHH-HHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHH
Confidence 211 3455 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
+++||++++|+||+++||||+|||++++.+++.++|++|+.. ||.+++
T Consensus 162 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~------------------------------- 210 (265)
T 3qxz_A 162 LLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAA------------------------------- 210 (265)
T ss_dssp HHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHH-------------------------------
T ss_pred HHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHH-------------------------------
Confidence 999999999999999999999999999999999999999999 875443
Q ss_pred chhHHHHHHHHHHhhcCCchhH--HHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSG--VLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~--l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++.....+++++ ++.|...+..++.|+|++|++++|++||+|++..
T Consensus 211 -----~~K~~l~~~~~~~l~~~~~l~~e~~~~~~~~~s~d~~egi~Af~ekr~P~f~g 263 (265)
T 3qxz_A 211 -----LTKRLLWDAQMTGMSAAEVAARETADHLRLMGSQDAAEGPRAFIDGRPPRWAG 263 (265)
T ss_dssp -----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTHHHHHHHHHHHTSCCCCCC
T ss_pred -----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHcCCCCCCCC
Confidence 45778888888889999 9999999999999999999999999999998653
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=434.06 Aligned_cols=258 Identities=24% Similarity=0.317 Sum_probs=230.1
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC---C
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG---A 76 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~---~ 76 (539)
|+ +.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..... .
T Consensus 1 m~-~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 78 (269)
T 1nzy_A 1 MY-EAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGV 78 (269)
T ss_dssp CC-SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHH
T ss_pred CC-ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccCh
Confidence 65 5688998 7999999999996 799999999999999999999999999999999999999999998754210 0
Q ss_pred Ccc-cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 77 GDV-SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 77 ~~~-~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
... ..+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 79 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 157 (269)
T 1nzy_A 79 RDHFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVG 157 (269)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhh
Confidence 000 11222345566 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|+++++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------- 211 (269)
T 1nzy_A 158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV-------------------------- 211 (269)
T ss_dssp HHHHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH--------------------------
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999875433
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~ 297 (539)
.+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|++.+.
T Consensus 212 ----------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f~~~ 263 (269)
T 1nzy_A 212 ----------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQV 263 (269)
T ss_dssp ----------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCSS
T ss_pred ----------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence 4567788888888999999999999999999999999999999999987543
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-56 Score=432.88 Aligned_cols=251 Identities=24% Similarity=0.297 Sum_probs=190.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
+..|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus 5 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 83 (256)
T 3qmj_A 5 MVTLQIDD-DNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSE 83 (256)
T ss_dssp -CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCC
T ss_pred cceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHH
Confidence 45688999 7999999999996 699999999999999999999999999999999999999999999876432222223
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 84 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~ 162 (256)
T 3qmj_A 84 GKFGFRGLI-KALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAW 162 (256)
T ss_dssp CSSHHHHHH-HHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 344456677 7799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 163 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (256)
T 3qmj_A 163 LLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLM-------------------------------- 210 (256)
T ss_dssp HHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999875543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|+|||+
T Consensus 211 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 256 (256)
T 3qmj_A 211 ----AVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADFTDRRR 256 (256)
T ss_dssp ----HHHHHHHCC-------------------------------------
T ss_pred ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccCC
Confidence 4577888888888999999999999999999999999999999985
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-55 Score=429.60 Aligned_cols=253 Identities=26% Similarity=0.380 Sum_probs=221.3
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+ +++|.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++ ... ...
T Consensus 5 m~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~--~~~- 79 (265)
T 3rsi_A 5 MSAARELLVER-DGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW--MVR- 79 (265)
T ss_dssp ----CCEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-------------
T ss_pred CCCCCcEEEEE-ECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc--ccc-
Confidence 54 57899999 7999999999996 69999999999999999999999999999999999999999998 321 111
Q ss_pred ccccchHHHH-HHHHHH-H--hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhcccccc
Q 009256 79 VSLMPDVSVE-LVVNLI-E--DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (539)
Q Consensus 79 ~~~~~~~~~~-~~~~~i-~--~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v 154 (539)
...+.....+ ++ .++ . ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus 80 ~~~~~~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~v 158 (265)
T 3rsi_A 80 DGSAPPLDPATIG-KGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQI 158 (265)
T ss_dssp -----CCCHHHHH-HHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHS
T ss_pred hHHHHHHhHHHHH-HHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHh
Confidence 1122222334 56 668 8 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHH
Q 009256 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (539)
Q Consensus 155 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (539)
|..+|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 159 G~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------- 213 (265)
T 3rsi_A 159 PYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVR------------------------- 213 (265)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHH-------------------------
T ss_pred CHHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999999999999999999999999876543
Q ss_pred HHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|+|||+|++.
T Consensus 214 -----------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3rsi_A 214 -----------NAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAFKEKREARFT 263 (265)
T ss_dssp -----------HHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTSCCCCC
T ss_pred -----------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 45778888888899999999999999999999999999999999998864
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-55 Score=427.84 Aligned_cols=252 Identities=25% Similarity=0.387 Sum_probs=228.2
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-CCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.+.++. +++|++||||||+.|+||.+|+++|.+++++++.|+++|+||||| .|++||+|+|++++.. .. .....
T Consensus 8 ~~~i~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~-~~-~~~~~ 84 (265)
T 2ppy_A 8 KQYLTVFK-EDGIAEIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS-AD-PRFKT 84 (265)
T ss_dssp CSSEEEEE-ETTEEEEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT-SC-HHHHH
T ss_pred CCeEEEEe-eCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc-cc-hhHHH
Confidence 45788998 799999999999669999999999999999999999999999999 8999999999998864 11 11112
Q ss_pred cchHH-HHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCc-eEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 82 MPDVS-VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKT-QLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 82 ~~~~~-~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
+.... ++++ .+|.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|+|++|..+|
T Consensus 85 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 163 (265)
T 2ppy_A 85 QFCLFCNETL-DKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIGYSRA 163 (265)
T ss_dssp HHHHHHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhCHHHH
Confidence 22334 5666 67999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|+|++++.+++.+++++|+..||.+++
T Consensus 164 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 213 (265)
T 2ppy_A 164 LDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVS------------------------------ 213 (265)
T ss_dssp HHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred HHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875433
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|++
T Consensus 214 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~ 262 (265)
T 2ppy_A 214 ------NIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQPNW 262 (265)
T ss_dssp ------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 4577888888888999999999999999999999999999999999886
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-55 Score=426.87 Aligned_cols=254 Identities=22% Similarity=0.279 Sum_probs=228.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-CC-CCcccCCCchhhhhhcCCC
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NG-GRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g-~g-~~F~aG~Dl~~~~~~~~~~ 77 (539)
|+|+.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+ +|+||||| .| ++||+|+|++++.......
T Consensus 1 m~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~ 78 (261)
T 1ef8_A 1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDP 78 (261)
T ss_dssp CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CT
T ss_pred CCcceEEEEE-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchh
Confidence 8899999999 7999999999996 79999999999999999999999 99999999 88 9999999999876532211
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
. .+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 79 -~-~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 155 (261)
T 1ef8_A 79 -L-SYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH 155 (261)
T ss_dssp -T-CTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred -H-HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHH
Confidence 1 1222345666 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|+++++||++++|+||+++||||+|+|++++.+++.+++++|+..||.+++
T Consensus 156 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 207 (261)
T 1ef8_A 156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999875432
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHH--HHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFK--ELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~--~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|.+.+. .++.|+|++|++++|++||+|++.
T Consensus 208 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 259 (261)
T 1ef8_A 208 --------VIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV 259 (261)
T ss_dssp --------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred --------HHHHHHHHhhcCCHHHHHHHHHHHhhHHHhhcCHHHHHHHHHHHccCCCCCC
Confidence 45677888878889999999999999 999999999999999999998863
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-55 Score=435.16 Aligned_cols=251 Identities=25% Similarity=0.330 Sum_probs=223.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcC----CC
Q 009256 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHG----AG 77 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~----~~ 77 (539)
++.|.++. +++|++||||||+.|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 8 ~~~i~~~~-~~~va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~ 86 (287)
T 3gkb_A 8 YSTLRVSS-EHGVARIILDNPPVNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAA 86 (287)
T ss_dssp CSSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence 67899999 79999999999999999999999999999999999999999999998 79999999998864220 00
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeC-CceEeCCcccCCCCCCcchhhccccccCH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
....+....++++ .+|.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|+|++|.
T Consensus 87 ~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~ 165 (287)
T 3gkb_A 87 SAPADVNVFQAVG-ELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGR 165 (287)
T ss_dssp TSCTTCCTTHHHH-HHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCH
Confidence 1112223345666 779999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|++|++||++|+|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 166 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~--------------------------- 218 (287)
T 3gkb_A 166 NRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVIE--------------------------- 218 (287)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHH---------------------------
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999986543
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh--ccC
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA--TSK 294 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~--~~~ 294 (539)
.+|+.++.. .+.++++.|...+..++.|+|++|++++|+|||+ |++
T Consensus 219 ---------~~K~~l~~~---~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekr~~~P~f 266 (287)
T 3gkb_A 219 ---------AAKRSLPAD---DLKEGLLGENDAWAATFSLPAAQQLISGGLKDGAQTPAG 266 (287)
T ss_dssp ---------HHHHHSCCC---CCHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTTTTSHHH
T ss_pred ---------HHHHHHHcc---CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCch
Confidence 335566542 3568899999999999999999999999999987 554
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-55 Score=443.13 Aligned_cols=289 Identities=20% Similarity=0.295 Sum_probs=233.6
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC--c
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG--D 78 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~--~ 78 (539)
++.|.+++ +|+|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||+| ++||+|+|++++......+ .
T Consensus 8 ~e~vl~e~-~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~ 86 (353)
T 4hdt_A 8 NEDVLVNV-EGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAE 86 (353)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHH
T ss_pred CCcEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHH
Confidence 56799999 8999999999996 6999999999999999999999999999999998 6999999999986543221 1
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+....++++ ..|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++| .+
T Consensus 87 ~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g-~~ 164 (353)
T 4hdt_A 87 ARRFWFDEYRLN-AHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPG-KL 164 (353)
T ss_dssp HHHHHHHHHHHH-HHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSST-TH
T ss_pred HHHHHHHHHHHH-HHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhh-HH
Confidence 222333344566 6799999999999999999999999999999999999999999999999999999999999999 69
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCch----------------hhhhhhcccccCChHH
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKP----------------WIRSLHRTDKLGSLSE 222 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~----------------~~~~~~~~~~~~~~~~ 222 (539)
|++|++||++++|+||+++||||+|||+++|.+.+.+++.+....... .+..++.. ..+..
T Consensus 165 a~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~---~~~~~ 241 (353)
T 4hdt_A 165 GLHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTG---DTVAD 241 (353)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTC---SSHHH
T ss_pred HHHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCC---CCHHH
Confidence 999999999999999999999999999999999999988764332110 01111111 11111
Q ss_pred HHHHHH-----HHHHHH-HHhCCCchhHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHhCCHHHHhHHHHHH--hhhhcc
Q 009256 223 AREVLK-----LARLQA-KKTAPNMPQHQACLDVIEEGIVH-GGYSGVLKEAKVFKELVMLDTSRGLVHVFF--AQRATS 293 (539)
Q Consensus 223 ~~~~~~-----~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~-~~~~~l~~e~~~~~~~~~s~~~~~~~~af~--~kr~~~ 293 (539)
..+.++ ++.+.. +-......+...+|+.++++... +++++++.|...+..++.|+|++||++||+ |||+|+
T Consensus 242 i~~~L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~~~~~~~sl~e~l~~E~~~~~~~~~s~D~~EGvrAfl~dekR~P~ 321 (353)
T 4hdt_A 242 IIAALRAHDAPAAGEAADLIATRSPIALSVTLESVRRAAKLQSLEDTLRQEYRVSCASLKSHDLVEGIRAQLVDKDRNPK 321 (353)
T ss_dssp HHHHHHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCC
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCchHHHHHhhhhhCcCCCCC
Confidence 111111 111222 23445666888999999998875 799999999999999999999999999999 999999
Q ss_pred CCCC
Q 009256 294 KVPN 297 (539)
Q Consensus 294 ~~~~ 297 (539)
|.|.
T Consensus 322 w~p~ 325 (353)
T 4hdt_A 322 WRPA 325 (353)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9864
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-55 Score=427.33 Aligned_cols=251 Identities=26% Similarity=0.367 Sum_probs=223.0
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...... ..+
T Consensus 3 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~~ 78 (257)
T 2ej5_A 3 ETIRYEV-KGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDH---GDV 78 (257)
T ss_dssp SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CH---HHH
T ss_pred CceEEEe-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccch---hHH
Confidence 6788998 7999999999995 7999999999999999999999999999999999999999999988643211 111
Q ss_pred ch-HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 83 PD-VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 83 ~~-~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
.. ..++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 79 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 157 (257)
T 2ej5_A 79 LRSRYAPMM-KALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE 157 (257)
T ss_dssp HHHTHHHHH-HHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHHH
Confidence 11 244566 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 158 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 205 (257)
T 2ej5_A 158 LAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIG-------------------------------- 205 (257)
T ss_dssp HHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999875432
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 206 ----~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~~ 255 (257)
T 2ej5_A 206 ----LIKRLLRESEETTFDRYLEREAECQRIAGLTSDHREGVKAFFEKRKPLFQ 255 (257)
T ss_dssp ----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCCCCCC
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCChHHHHHHHHHhcCCCCCCC
Confidence 45677888888889999999999999999999999999999999998763
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-55 Score=427.34 Aligned_cols=253 Identities=30% Similarity=0.466 Sum_probs=226.5
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
|+ +..+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 m~~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~-- 77 (258)
T 2pbp_A 1 MSEFVSIAARQ-EGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPI-- 77 (258)
T ss_dssp ---CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHH--
T ss_pred CCCcceEEEEe-eCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccch--
Confidence 65 56788898 7899999999996 6999999999999999999999999999999999999999999988642210
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+...+ +++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 78 ~~~~~~~~-~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 155 (258)
T 2pbp_A 78 RLEWLNQF-ADW-DRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKR 155 (258)
T ss_dssp HHHHHCTT-HHH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred hHHHHHHH-HHH-HHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHH
Confidence 01111112 455 6699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|+++++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 156 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 206 (258)
T 2pbp_A 156 ALEWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALR----------------------------- 206 (258)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred HHHHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.+...+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus 207 -------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~~ 255 (258)
T 2pbp_A 207 -------LIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRKPRF 255 (258)
T ss_dssp -------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTSCCCC
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence 4567888888889999999999999999999999999999999998875
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-55 Score=433.64 Aligned_cols=252 Identities=21% Similarity=0.304 Sum_probs=221.4
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC-------
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG------- 75 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~------- 75 (539)
++|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....
T Consensus 11 ~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 89 (274)
T 3tlf_A 11 DTIKYEV-DGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPY 89 (274)
T ss_dssp SSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CT
T ss_pred CceEEEE-ECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence 5789999 7999999999996 799999999999999999999999999999999999999999999865432
Q ss_pred CCcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
......+. ..++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|+|++|
T Consensus 90 ~~~~~~~~-~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG 166 (274)
T 3tlf_A 90 LSTYDQWE-APQEGT-PPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLP 166 (274)
T ss_dssp TCSGGGGS-CCCTTC-CCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSC
T ss_pred hhHHHHHH-HHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhC
Confidence 11111111 223445 568999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSK--SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQ 233 (539)
Q Consensus 156 ~~~a~~l~l~g~--~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (539)
..+|+++++||+ +++|+||+++||||+|+|++++.+++.++|++|++.||.+++
T Consensus 167 ~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------ 222 (274)
T 3tlf_A 167 RSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVR------------------------ 222 (274)
T ss_dssp HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------
T ss_pred HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH------------------------
Confidence 999999999999 999999999999999999999999999999999999875443
Q ss_pred HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 234 AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 223 ------------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 272 (274)
T 3tlf_A 223 ------------GTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPRAFVEKRQPNWQ 272 (274)
T ss_dssp ------------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred ------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 45788888888899999999999999999999999999999999998863
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-55 Score=426.38 Aligned_cols=249 Identities=28% Similarity=0.433 Sum_probs=225.8
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+ +.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus 5 m~-~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 82 (256)
T 3trr_A 5 MA-DEVLIEQ-RDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSE 82 (256)
T ss_dssp CC-CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEET
T ss_pred CC-CceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhh
Confidence 44 5689999 7999999999996 6999999999999999999999999999999999999999999998763321111
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.. + . + ..+ ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 83 ~~----~-~-~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 154 (256)
T 3trr_A 83 RG----L-G-F-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA 154 (256)
T ss_dssp TE----E-T-T-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred hh----h-h-H-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence 11 1 1 2 235 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 204 (256)
T 3trr_A 155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVA------------------------------ 204 (256)
T ss_dssp HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 205 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 254 (256)
T 3trr_A 205 ------ATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAFAEKRAPVWQ 254 (256)
T ss_dssp ------HHHHHHHHGGGSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred ------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 45788888888999999999999999999999999999999999999864
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-56 Score=441.71 Aligned_cols=256 Identities=25% Similarity=0.333 Sum_probs=183.6
Q ss_pred CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhh---hcCCC
Q 009256 3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQK---VHGAG 77 (539)
Q Consensus 3 ~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~---~~~~~ 77 (539)
++.|.++. ++ +|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.. .....
T Consensus 28 ~~~v~~~~-~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~ 106 (298)
T 3qre_A 28 QDAVLYEA-TPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM 106 (298)
T ss_dssp CCSEEEEE-CTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred CCeEEEEE-eCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 46799999 77 99999999996 699999999999999999999999999999999999999999999865 11110
Q ss_pred ----cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccc
Q 009256 78 ----DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL 153 (539)
Q Consensus 78 ----~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ 153 (539)
....+......++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|+
T Consensus 107 ~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~ 185 (298)
T 3qre_A 107 AKAKDANLADLVGERPP-HFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRL 185 (298)
T ss_dssp --------------CCT-TGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHH-HHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHh
Confidence 1111122223344 56899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc-CchhhhhhhcccccCChHHHHHHHHHHHH
Q 009256 154 VGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR-RKPWIRSLHRTDKLGSLSEAREVLKLARL 232 (539)
Q Consensus 154 vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (539)
+|..+|+++++||++++|+||+++||||+|||++++.+++.++|++|+.. ||.+++
T Consensus 186 vG~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~----------------------- 242 (298)
T 3qre_A 186 TSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMA----------------------- 242 (298)
T ss_dssp SCHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHH-----------------------
T ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHH-----------------------
Confidence 99999999999999999999999999999999999999999999999998 875443
Q ss_pred HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 233 QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 233 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|+|||+|++.+
T Consensus 243 -------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egv~AF~ekR~P~f~~ 293 (298)
T 3qre_A 243 -------------VIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVSFLEKRPPQFPS 293 (298)
T ss_dssp -------------HHHHHHHGGGGC---------------------------------------
T ss_pred -------------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence 457888888888999999999999999999999999999999999998755
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-55 Score=430.49 Aligned_cols=255 Identities=27% Similarity=0.416 Sum_probs=224.4
Q ss_pred CC-CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCC
Q 009256 1 MA-APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~-~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~ 77 (539)
|+ ++.|.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.| ++||+|+|++++.......
T Consensus 5 m~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~ 83 (267)
T 3r9t_A 5 MTDAPGALAER-RGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLY 83 (267)
T ss_dssp ---CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCS
T ss_pred CCCCCcEEEEE-ECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchh
Confidence 44 56799999 7999999999995 7999999999999999999999999999999999 5999999999987643222
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
.. .........+ . +.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 84 ~~-~~~~~~~~~~-~-~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 160 (267)
T 3r9t_A 84 HP-DHPEWGFAGY-V-RHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRK 160 (267)
T ss_dssp CT-TCGGGCGGGT-T-TCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHH
T ss_pred hH-HHHhHHHHHH-H-HHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHH
Confidence 11 1111100112 1 3489999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 161 ~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------- 212 (267)
T 3r9t_A 161 VAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQ---------------------------- 212 (267)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999886543
Q ss_pred CCCchhHHHHHHH---HHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDV---IEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~---~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+. ++.....+++++++.|...+..++.|+|++|++++|+|||+|++.
T Consensus 213 --------~~K~~~~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR~P~f~ 265 (267)
T 3r9t_A 213 --------ASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAFAEKREPVWQ 265 (267)
T ss_dssp --------HHHHHHTTEETTEEGGGHHHHHHHHHHHHHHTTSSHHHHHHHHHHTTSCCCCC
T ss_pred --------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCCC
Confidence 44667 777777889999999999999999999999999999999998864
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=429.94 Aligned_cols=253 Identities=21% Similarity=0.339 Sum_probs=226.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++...........
T Consensus 32 ~~~v~~~~-~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 110 (287)
T 2vx2_A 32 PRPTSARQ-LDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAE 110 (287)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHH
T ss_pred CcceEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHH
Confidence 35788999 7899999999996 699999999999999999999999999999999999999999998754321111112
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |+|++|..+|++
T Consensus 111 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~~ 188 (287)
T 2vx2_A 111 VFQTCSKVM-MHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVALE 188 (287)
T ss_dssp HHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHHH
Confidence 223344566 679999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 189 llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~-------------------------------- 236 (287)
T 2vx2_A 189 MLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVS-------------------------------- 236 (287)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999875433
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++
T Consensus 237 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~f 285 (287)
T 2vx2_A 237 ----LGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVW 285 (287)
T ss_dssp ----HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCC
T ss_pred ----HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCCCC
Confidence 3467788877888999999999999999999999999999999999875
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-55 Score=429.20 Aligned_cols=249 Identities=27% Similarity=0.338 Sum_probs=207.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+.|.++. +++|++||||||+ +|+||.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++....... ...
T Consensus 11 ~~v~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~- 87 (262)
T 3r9q_A 11 PAVRVEK-AGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNE-LHP- 87 (262)
T ss_dssp CSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCC-CCT-
T ss_pred CEEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhh-HHH-
Confidence 3588999 7999999999996 69999999999999999999999999999999999999999999986543221 110
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
.....++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+++
T Consensus 88 -~~~~~~~-~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~l 165 (262)
T 3r9q_A 88 -HGPGPMG-PSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDL 165 (262)
T ss_dssp -TSSCTTS-STTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred -hhhhHHH-HHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 0011222 34679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 166 ~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 212 (262)
T 3r9q_A 166 ILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVR--------------------------------- 212 (262)
T ss_dssp HHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH---------------------------------
T ss_pred HHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999986543
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.....+++++++.|.. +..++.| |++|++++|+|||+|.+.
T Consensus 213 ---~~K~~~~~~~~~~l~~~l~~e~~-~~~~~~s-d~~Eg~~AF~ekr~p~~~ 260 (262)
T 3r9q_A 213 ---ADRDSAIAQWGMAEEAALDNEFG-SIERVAT-EALEGAGRFAAGEGRHGA 260 (262)
T ss_dssp ---HHHHHHHHTTTSCHHHHHHHHHT-HHHHHHC-------------------
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHH-HHHHhcc-HHHHHHHHHHcCCCCCCC
Confidence 45788888888999999999999 9999999 999999999999998863
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=424.43 Aligned_cols=253 Identities=18% Similarity=0.179 Sum_probs=217.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC-CCc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG-AGD 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~ 78 (539)
|+++.|.++. +++|++||||||+ +|+||.+|+.+|.+++++++.| ++|+|||||.|++||+|+|++++..... ...
T Consensus 4 m~~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~ 81 (267)
T 3hp0_A 4 VTYQTIKVRF-QASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGRK 81 (267)
T ss_dssp -CCSSEEEEE-ETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTCC
T ss_pred CCCceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChHH
Confidence 6788899999 7999999999996 6999999999999999999986 6999999999999999999999876421 112
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|..+
T Consensus 82 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~ 159 (267)
T 3hp0_A 82 QASSQEPLYDLW-MKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQK 159 (267)
T ss_dssp SCCCCHHHHHHH-HHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHH
T ss_pred HHHHHHHHHHHH-HHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHH
Confidence 233445556677 779999999999999999999999999999999999999999999999999875 778999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++|++||++++|+||+++||||+|||+.+ +.+.+++++|++.||.+++
T Consensus 160 A~ellltg~~i~A~eA~~~GLV~~vv~~~~--~~~~~~a~~la~~~p~a~~----------------------------- 208 (267)
T 3hp0_A 160 AHYMTLMTKPISVQEASEWGLIDAFDAESD--VLLRKHLLRLRRLNKKGIA----------------------------- 208 (267)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSSSCBCSCTT--HHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCCHH--HHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999998654 3478999999999886543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++... ..++++++.|.+.+..++.|+|++|++++|+|||+|++.+
T Consensus 209 -------~~K~~l~~~~-~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekr~P~~~~ 258 (267)
T 3hp0_A 209 -------HYKQFMSSLD-HQVSRAKATALTANQDMFSDPQNQMGIIRYVETGQFPWED 258 (267)
T ss_dssp -------HHHHHHHHHC-CHHHHHHHHHHHHHHHHTTSTTHHHHHHHHTTSCCC----
T ss_pred -------HHHHHHHhcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCC
Confidence 3456666543 3457778889999999999999999999999999999754
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-54 Score=424.98 Aligned_cols=256 Identities=20% Similarity=0.309 Sum_probs=227.6
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC---c
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG---D 78 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~---~ 78 (539)
|+++.++.++++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... .
T Consensus 2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 81 (275)
T 1dci_A 2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD 81 (275)
T ss_dssp CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence 6778888745789999999996 79999999999999999999999999999999999999999999986531110 0
Q ss_pred -------ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccc
Q 009256 79 -------VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP 151 (539)
Q Consensus 79 -------~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 151 (539)
...+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~ 160 (275)
T 1dci_A 82 VARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLP 160 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGG
T ss_pred hhhhhHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHH
Confidence 001112234555 678999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCH-HHHHHHHHcCCCCCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHH
Q 009256 152 RLVGL-SKAIEMMLLSKSITSEEGWKLGLIDAVVTS-EELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKL 229 (539)
Q Consensus 152 r~vG~-~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (539)
|++|. .+|++|++||++++|+||+++||||+|||+ +++.+++.+++++|++.||.+++
T Consensus 161 r~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~-------------------- 220 (275)
T 1dci_A 161 KVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ-------------------- 220 (275)
T ss_dssp GTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH--------------------
T ss_pred HHhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHH--------------------
Confidence 99999 999999999999999999999999999999 99999999999999999976543
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhh---hhccCC
Q 009256 230 ARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ---RATSKV 295 (539)
Q Consensus 230 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~k---r~~~~~ 295 (539)
.+|+.++.+...+++++++.|...+..++.|+|++|++++|++| |+|++.
T Consensus 221 ----------------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ek~~~r~p~f~ 273 (275)
T 1dci_A 221 ----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSITFS 273 (275)
T ss_dssp ----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGCCCC
T ss_pred ----------------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCCC
Confidence 45677888888889999999999999999999999999999999 888753
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-54 Score=426.05 Aligned_cols=253 Identities=23% Similarity=0.241 Sum_probs=225.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhh-c-CCCccc
Q 009256 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKV-H-GAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~-~-~~~~~~ 80 (539)
++.+.++.++++|++||||||+.|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++ +... . ......
T Consensus 9 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~~~~~~~~ 87 (264)
T 1wz8_A 9 YPGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMRASHEALL 87 (264)
T ss_dssp CTTEEEEEEETTEEEEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHHHCHHHHH
T ss_pred CCeEEEEEccCCEEEEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccccchHHHH
Confidence 456888873478999999999999999999999999999999999999999999999999999999 7542 1 101011
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 88 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 166 (264)
T 1wz8_A 88 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK 166 (264)
T ss_dssp HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred HHHHHHHHHH-HHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence 1223345666 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 167 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 215 (264)
T 1wz8_A 167 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH------------------------------- 215 (264)
T ss_dssp HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred HHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999875432
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.+... ++++++.|...+..++.|+|++|++++|++||+|++
T Consensus 216 -----~~K~~l~~~~~~-~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 263 (264)
T 1wz8_A 216 -----HTKHALNHWYRS-FLPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 263 (264)
T ss_dssp -----HHHHHHHHHHHT-THHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred -----HHHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHccCCCCC
Confidence 346777777777 899999999999999999999999999999998874
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=427.45 Aligned_cols=255 Identities=24% Similarity=0.287 Sum_probs=215.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-----CC-CCcccCCCchhhhhhcC
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-----NG-GRFSGGFDINVFQKVHG 75 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g-----~g-~~F~aG~Dl~~~~~~~~ 75 (539)
++.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+||||| .| ++||+|+|++++.....
T Consensus 9 ~~~v~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~ 87 (275)
T 4eml_A 9 YDDILYYK-AGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY 87 (275)
T ss_dssp CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred CceEEEEE-ECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccc
Confidence 67799999 7999999999996 69999999999999999999999999999999 88 59999999999865221
Q ss_pred CCcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 76 AGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
............+++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~vG 166 (275)
T 4eml_A 88 IDDQGTPRLNVLDLQ-RLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARIVG 166 (275)
T ss_dssp -------CCCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHC
T ss_pred cchhhHHHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhH
Confidence 111111111234566 7799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAK 235 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (539)
..+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 167 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------- 220 (275)
T 4eml_A 167 QKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIR-------------------------- 220 (275)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------
Confidence 999999999999999999999999999999999999999999999999986543
Q ss_pred HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 236 KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 236 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|++++..... .....+.|.+.+..++.|+|++|++.+|+|||+|++..
T Consensus 221 ----------~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~eg~~AF~ekR~p~f~~ 270 (275)
T 4eml_A 221 ----------CLKAAFNADCDG-QAGLQELAGNATLLYYMTEEGSEGKQAFLEKRPPDFSQ 270 (275)
T ss_dssp ----------HHHHHHHHTTSH-HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred ----------HHHHHHHhhhcc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 345566654332 23344567788889999999999999999999998643
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-55 Score=430.88 Aligned_cols=253 Identities=25% Similarity=0.346 Sum_probs=215.4
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
++|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++...........
T Consensus 20 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~- 97 (278)
T 4f47_A 20 PDALVEQ-RGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPGDSFKD- 97 (278)
T ss_dssp CSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC--------------------
T ss_pred CceEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchhhhHHH-
Confidence 5688999 7999999999996 699999999999999999999999999999999999999999999865432211110
Q ss_pred chHHHHHHHHHHH---hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 83 PDVSVELVVNLIE---DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 83 ~~~~~~~~~~~i~---~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
......++ +.+. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 98 ~~~~~~~~-~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~a 176 (278)
T 4f47_A 98 GSYDPSRI-DALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPYTVA 176 (278)
T ss_dssp ---CTTCB-TTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCHHHH
T ss_pred HHHHHHHH-HHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCHHHH
Confidence 00112233 3455 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|+|++++.+++.++|++|++.||.+++
T Consensus 177 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 226 (278)
T 4f47_A 177 CDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQ------------------------------ 226 (278)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH------------------------------
T ss_pred HHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 227 ------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~ekr~p~f~ 276 (278)
T 4f47_A 227 ------AILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAFAQKRKPNFQ 276 (278)
T ss_dssp ------HHHHHHHHTTTSCHHHHHHHHHHHHGGGGGSSHHHHHHHHHHTTSCCCCC
T ss_pred ------HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCC
Confidence 45788888888899999999999999999999999999999999998864
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-55 Score=429.86 Aligned_cols=253 Identities=22% Similarity=0.264 Sum_probs=216.5
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC-cccc
Q 009256 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~ 81 (539)
+++|.++.++++|++||||||+.|+||.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++....... ....
T Consensus 12 ~~~v~~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 91 (272)
T 3qk8_A 12 FPSLRFEPGEHGVLNLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIR 91 (272)
T ss_dssp CTTEEEEECSTTEEEEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHH
T ss_pred CCeEEEEEeCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHH
Confidence 578999993348999999999999999999999999999999999999999999999999999999986542211 1112
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 170 (272)
T 3qk8_A 92 IMREARDLV-LNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKY 170 (272)
T ss_dssp HHHHHHHHH-HHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHHHH
Confidence 223344566 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 171 l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 218 (272)
T 3qk8_A 171 YLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIR-------------------------------- 218 (272)
T ss_dssp HHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999986554
Q ss_pred hhHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 242 PQHQACLDVIEEGIV---HGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~---~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++.... .+++..++.| ..++.|+|++|++++|+|||+|++..
T Consensus 219 ----~~K~~l~~~~~~~~~~~~~~~~~e----~~~~~s~d~~eg~~Af~ekR~p~f~g 268 (272)
T 3qk8_A 219 ----WTKRSLNHWYRMFGPTFETSLGLE----FLGFTGPDVQEGLAAHRQKRPARFTD 268 (272)
T ss_dssp ----HHHHHHHHHHHHTHHHHHHHHHHH----HHHTTSSHHHHHHHHHHTTSCCCC--
T ss_pred ----HHHHHHHHHHhhcchhHHHHHHHH----HHHhCCHHHHHHHHHHHcCCCCCCCC
Confidence 23444443332 2334444444 57899999999999999999998643
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=423.49 Aligned_cols=250 Identities=25% Similarity=0.383 Sum_probs=218.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
+++.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus 13 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 91 (265)
T 3qxi_A 13 TEPEVLVEQ-RDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEG 91 (265)
T ss_dssp --CCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETT
T ss_pred CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhh
Confidence 357799999 7999999999996 69999999999999999999999999999999999999999999986543221111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.. . . + ..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 92 --~~-~-~-~-~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 164 (265)
T 3qxi_A 92 --RG-L-G-F-TERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAM 164 (265)
T ss_dssp --TE-E-T-T-TTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCHHHHH
T ss_pred --hh-h-h-H-HHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCHHHHH
Confidence 11 1 1 2 22344 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 165 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~------------------------------- 213 (265)
T 3qxi_A 165 ELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVA------------------------------- 213 (265)
T ss_dssp HHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred HHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999875443
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 214 -----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f~ 263 (265)
T 3qxi_A 214 -----ATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAFAEKRPPRWT 263 (265)
T ss_dssp -----HHHHHHHHHTTCCTTTHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCCC
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 45778888888899999999999999999999999999999999999864
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-53 Score=421.80 Aligned_cols=253 Identities=26% Similarity=0.349 Sum_probs=219.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCCchhhhhhcCCCccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
|+.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|+ +||+|+|++++....... ..
T Consensus 12 ~~~i~~~~-~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~-~~ 89 (273)
T 2uzf_A 12 YDEIKYEF-YEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVG-ED 89 (273)
T ss_dssp CSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------C-CS
T ss_pred CceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccch-hh
Confidence 45688998 7899999999994 79999999999999999999999999999999998 999999999885421111 11
Q ss_pred cc-chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 81 LM-PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~-~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.+ .....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|
T Consensus 90 ~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A 168 (273)
T 2uzf_A 90 QIPRLNVLDLQ-RLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKA 168 (273)
T ss_dssp SSCCCTHHHHH-HHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHHH
T ss_pred hHHHhhHHHHH-HHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHHH
Confidence 11 11134566 67999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 169 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 218 (273)
T 2uzf_A 169 REIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALR------------------------------ 218 (273)
T ss_dssp HHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHH------------------------------
T ss_pred HHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999875443
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHH-HHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEA-KVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~-~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++ ...+++++++.|. ..+..++.|+|++|++++|++||+|++.+
T Consensus 219 ------~~K~~l~--~~~~~~~~l~~e~~~~~~~~~~s~d~~egi~af~ekr~p~f~~ 268 (273)
T 2uzf_A 219 ------FLKAAMN--ADTDGLAGLQQMAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQ 268 (273)
T ss_dssp ------HHHHHHH--HHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCSS
T ss_pred ------HHHHHHH--ccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcCCCCCCC
Confidence 3355565 2346788899999 99999999999999999999999988643
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=425.82 Aligned_cols=252 Identities=23% Similarity=0.290 Sum_probs=210.4
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc--
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-- 78 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-- 78 (539)
+++.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++ +|||||.|++||+|+|++++........
T Consensus 24 ~~~~i~~~~-~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~ 101 (280)
T 2f6q_A 24 GFETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEE 101 (280)
T ss_dssp ECSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHH
T ss_pred CCCeEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhH
Confidence 466788998 7999999999995 7999999999999999999999999 9999999999999999998864321110
Q ss_pred -ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 79 -~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 102 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 180 (280)
T 2f6q_A 102 KAKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPA 180 (280)
T ss_dssp HHHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHH
Confidence 001112334556 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|+++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 181 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 232 (280)
T 2f6q_A 181 KATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR---------------------------- 232 (280)
T ss_dssp HHHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999875432
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhc
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~ 292 (539)
.+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|
T Consensus 233 --------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekR~p 279 (280)
T 2f6q_A 233 --------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRKSK 279 (280)
T ss_dssp --------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC-----------
T ss_pred --------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCC
Confidence 34667777666678899999999999999999999999999999986
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-54 Score=423.01 Aligned_cols=247 Identities=21% Similarity=0.280 Sum_probs=222.9
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC-cccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-DVSL 81 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~ 81 (539)
+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++....... ....
T Consensus 28 ~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 106 (276)
T 3rrv_A 28 TEIDVRA-DGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAK 106 (276)
T ss_dssp TTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHH
T ss_pred CeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHH
Confidence 4688999 7999999999996 79999999999999999999999999999999999999999999987532211 1112
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 107 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~e 185 (276)
T 3rrv_A 107 TIRDGREIV-LGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAKE 185 (276)
T ss_dssp HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHHHH
Confidence 233345666 6799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|| +++.+++.++|++|++.||.+++
T Consensus 186 llltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~-------------------------------- 231 (276)
T 3rrv_A 186 YALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVE-------------------------------- 231 (276)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 99999999999999999999999 89999999999999999986543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhh
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr 290 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++.+|+|||
T Consensus 232 ----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~AF~ekR 276 (276)
T 3rrv_A 232 ----STKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKLADKN 276 (276)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCCC
T ss_pred ----HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 446777777777788999999999999999999999999999987
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-54 Score=425.37 Aligned_cols=257 Identities=24% Similarity=0.333 Sum_probs=216.5
Q ss_pred CCCCcEEEEEec-CcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCC-
Q 009256 1 MAAPRVTMEVGN-DGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA- 76 (539)
Q Consensus 1 M~~~~v~~~~~~-~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~- 76 (539)
|++++|.++. + ++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.| ++||+|+|++++......
T Consensus 24 ~~~~~v~~~~-~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~ 102 (289)
T 3t89_A 24 EGFEDIRYEK-STDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYK 102 (289)
T ss_dssp TTCSSEEEEE-ETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC---------
T ss_pred CCCCeEEEEE-ecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccch
Confidence 3567899999 6 899999999996 6999999999999999999999999999999999 599999999988542211
Q ss_pred CcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 77 GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
...........+++ ++|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+|++|.
T Consensus 103 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~ 181 (289)
T 3t89_A 103 DDSGVHHLNVLDFQ-RQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ 181 (289)
T ss_dssp -------CTHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred hhhHHHHHHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence 11111112244566 77999999999999999999999999999999999999999999999988888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|+++++||++++|+||+++||||+|||++++.+++.++|++|+..||.+++
T Consensus 182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~--------------------------- 234 (289)
T 3t89_A 182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALR--------------------------- 234 (289)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH---------------------------
T ss_pred HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999986543
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|++++..... .....+.|.+.+..++.|+|++|++++|+|||+|++..
T Consensus 235 ---------~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~~ 284 (289)
T 3t89_A 235 ---------CLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQPDFSK 284 (289)
T ss_dssp ---------HHHHHHHHTTSH-HHHHHHHHHHHHHHHTTSSTTTHHHHHHHTTSCCCCTT
T ss_pred ---------HHHHHHHhhccc-chHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCCCCCC
Confidence 345666654331 23344577888889999999999999999999998643
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-54 Score=424.60 Aligned_cols=254 Identities=19% Similarity=0.289 Sum_probs=205.3
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC--CCc-
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--AGD- 78 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~--~~~- 78 (539)
|+.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..... ...
T Consensus 8 ~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 86 (276)
T 2j5i_A 8 WKTVKVEI-EDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEIL 86 (276)
T ss_dssp CSSEEEEE-ETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTH
T ss_pred CceEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHH
Confidence 46788998 7999999999995 799999999999999999999999999999999999999999998753211 110
Q ss_pred ccccchHHHHH-HHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 79 VSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 79 ~~~~~~~~~~~-~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
...+....... + .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 87 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 165 (276)
T 2j5i_A 87 QEKIRREASQWQW-KLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHR 165 (276)
T ss_dssp HHHHHHHHHHHHT-TTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHH
Confidence 01111111222 3 568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|+++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 166 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------- 217 (276)
T 2j5i_A 166 QSLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLR---------------------------- 217 (276)
T ss_dssp HHHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred HHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999986543
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHH--hCCH-HHHhHHHHHHhhh--hccC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKEL--VMLD-TSRGLVHVFFAQR--ATSK 294 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~--~~s~-~~~~~~~af~~kr--~~~~ 294 (539)
.+|+.++.....+++++++.|...+..+ +.|+ |++|++++|+||| +|++
T Consensus 218 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~~d~~eg~~AF~ekr~r~p~~ 271 (276)
T 2j5i_A 218 --------AAKHGFKRCRELTWEQNEDYLYAKLDQSRLLDTEGGREQGMKQFLDDKSIKPGL 271 (276)
T ss_dssp --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred --------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcccCCCCc
Confidence 4577888888888899999888887766 6799 9999999999998 5554
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=419.65 Aligned_cols=252 Identities=22% Similarity=0.323 Sum_probs=219.5
Q ss_pred CCCCcEEEE----EecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC
Q 009256 1 MAAPRVTME----VGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG 75 (539)
Q Consensus 1 M~~~~v~~~----~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~ 75 (539)
|+ +.+.++ . +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.....
T Consensus 5 m~-~~v~~~~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~ 82 (267)
T 3oc7_A 5 MD-ALVDYAGPAAT-GGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGS 82 (267)
T ss_dssp CC-SSEEEECHHHH-SSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC---------
T ss_pred cc-cccCCCCccce-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccC
Confidence 44 578888 7 7999999999996 699999999999999999999999999999999999999999999862111
Q ss_pred CCcc----cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccc
Q 009256 76 AGDV----SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP 151 (539)
Q Consensus 76 ~~~~----~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 151 (539)
.... ..+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 161 (267)
T 3oc7_A 83 PSSAYDMAVERAREMAALM-RAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP 161 (267)
T ss_dssp --CHHHHHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT
T ss_pred chhhhhhHHHHHHHHHHHH-HHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH
Confidence 1110 01233455666 679999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHH
Q 009256 152 RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231 (539)
Q Consensus 152 r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (539)
++|..+|+++++||++++|+||+++||||+| ++++.+++.+++++|++.||.+++
T Consensus 162 -~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~---------------------- 216 (267)
T 3oc7_A 162 -KLSARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLA---------------------- 216 (267)
T ss_dssp -TSCHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHH----------------------
T ss_pred -HhCHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHH----------------------
Confidence 8999999999999999999999999999999 889999999999999999986543
Q ss_pred HHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 232 LQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 232 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|++
T Consensus 217 --------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~p~f 265 (267)
T 3oc7_A 217 --------------ASKALTTAAVLERFDRDAERLAEESARLFVSDEAREGMLAFLEKRSPNW 265 (267)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHTCCCTT
T ss_pred --------------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCC
Confidence 4467777777778899999999999999999999999999999999876
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-54 Score=427.70 Aligned_cols=256 Identities=21% Similarity=0.289 Sum_probs=218.2
Q ss_pred CCCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC--
Q 009256 2 AAPRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG-- 77 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~-- 77 (539)
+|+.+.++. +++|++|||| ||+ .|+||.+|+.+|.++++.++.|+. |+|||||.|++||+|+|++++.......
T Consensus 21 ~~~~v~~~~-~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~ 98 (291)
T 2fbm_A 21 TYRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRN 98 (291)
T ss_dssp CCSSEEEEE-CSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred CcceEEEEE-eCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccch
Confidence 467789999 8999999999 685 699999999999999999998875 9999999999999999999986421110
Q ss_pred -cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 78 -~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
....+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.
T Consensus 99 ~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~ 177 (291)
T 2fbm_A 99 TASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGK 177 (291)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhH
Confidence 0111222344566 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|++|++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 178 ~~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~--------------------------- 230 (291)
T 2fbm_A 178 ASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLE--------------------------- 230 (291)
T ss_dssp HHHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHH---------------------------
T ss_pred HHHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999875443
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHH-HhhhhccCCC
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVF-FAQRATSKVP 296 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af-~~kr~~~~~~ 296 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++.+| ++||+|++.+
T Consensus 231 ---------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~eg~~Af~~ekR~P~f~~ 282 (291)
T 2fbm_A 231 ---------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKIPLLGYKAAFPP 282 (291)
T ss_dssp ---------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTC-----------
T ss_pred ---------HHHHHHHhhhccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCCCCCC
Confidence 44677777766678899999999999999999999999999 9999998644
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=423.35 Aligned_cols=251 Identities=22% Similarity=0.307 Sum_probs=213.8
Q ss_pred EEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC-CCCcccCCCchhhhhhcCCCcccccc
Q 009256 6 VTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN-GGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 6 v~~~~~-~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~-g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
+.+..+ +++|++||||||+.|+||.+|+++|.+++++++.|+++|+|||||. |++||+|+|++++..... .....+.
T Consensus 5 v~v~~~~~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 83 (260)
T 1sg4_A 5 VLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSP-AHYAGYW 83 (260)
T ss_dssp EEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCH-HHHHHHH
T ss_pred EEEEEEecCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCH-HHHHHHH
Confidence 444432 6899999999998899999999999999999999999999999999 799999999998754211 1111222
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEee--CCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA--PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
...++++ .+|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++++|..+|++
T Consensus 84 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 162 (260)
T 1sg4_A 84 KAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAER 162 (260)
T ss_dssp HHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHHHH
Confidence 3344566 67999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|+|++++.+++.+++++|+..||.+++
T Consensus 163 llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 210 (260)
T 1sg4_A 163 ALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ-------------------------------- 210 (260)
T ss_dssp HHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999875443
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|++||+|+|
T Consensus 211 ----~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~~~~ 259 (260)
T 1sg4_A 211 ----LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLKEEK 259 (260)
T ss_dssp ----HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHTC---------
T ss_pred ----HHHHHHHHhhhccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcccC
Confidence 3456677666667888899999999999999999999999999999876
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=421.93 Aligned_cols=253 Identities=20% Similarity=0.270 Sum_probs=223.6
Q ss_pred CCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCC---
Q 009256 3 APRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAG--- 77 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~--- 77 (539)
|+.+.++. +++|++|||| ||+ .|+||.+|+++|.+++++++.|+ +|+|||||.|++||+|+|++++.......
T Consensus 4 ~~~i~~~~-~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (261)
T 2gtr_A 4 YRDIVVRK-QDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR 81 (261)
T ss_dssp CSSEEEEE-ETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred cceEEEEE-eCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhh
Confidence 56789999 7999999999 685 79999999999999999999887 49999999999999999999886421111
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
....+.....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 82 ~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 160 (261)
T 2gtr_A 82 ESTKMAEAIRNFV-NTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA 160 (261)
T ss_dssp HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHH
Confidence 0111222344566 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|++|++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 161 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~---------------------------- 212 (261)
T 2gtr_A 161 SANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLE---------------------------- 212 (261)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH----------------------------
T ss_pred HHHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999875443
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++.+|++||+|++
T Consensus 213 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr~P~f 261 (261)
T 2gtr_A 213 --------ESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 261 (261)
T ss_dssp --------HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHC-
T ss_pred --------HHHHHHHhccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCCCC
Confidence 4467777766667889999999999999999999999999999999874
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-54 Score=432.50 Aligned_cols=256 Identities=24% Similarity=0.268 Sum_probs=188.2
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-------CcccCCCchhhhhh
Q 009256 3 APRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-------RFSGGFDINVFQKV 73 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~-------~F~aG~Dl~~~~~~ 73 (539)
|+.|.++++ +++|++||||||+ +|+||.+|+++|.++|+.++.|+++|+|||||.|+ +||+|+|++++...
T Consensus 54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~ 133 (334)
T 3t8b_A 54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS 133 (334)
T ss_dssp CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence 567999983 4899999999996 69999999999999999999999999999999996 89999999987432
Q ss_pred cCC----------CcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEee-CCceEeCCcccCCCCC
Q 009256 74 HGA----------GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIP 142 (539)
Q Consensus 74 ~~~----------~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p 142 (539)
... ...........+++ ++|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p 212 (334)
T 3t8b_A 134 GYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFD 212 (334)
T ss_dssp --------------------CCHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSS
T ss_pred cccccccccchhhhHHHHHHHHHHHHH-HHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCC
Confidence 110 00011111234566 67999999999999999999999999999999999 9999999999999999
Q ss_pred CcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHH
Q 009256 143 GFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSE 222 (539)
Q Consensus 143 ~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~ 222 (539)
++|++++|+|++|..+|++|++||++|+|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 213 ~~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~------------- 279 (334)
T 3t8b_A 213 GGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR------------- 279 (334)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------
T ss_pred cccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|++++.... .+...+..|.+.+..++.|+|++|++.+|+|||+|++.+
T Consensus 280 -----------------------~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~s~d~~Eg~~AFleKR~P~f~~ 329 (334)
T 3t8b_A 280 -----------------------MLKFAFNLLDD-GLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP 329 (334)
T ss_dssp -----------------------HHHHHHHHTCC-CC-------------------------------------
T ss_pred -----------------------HHHHHHHhhhc-chHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCCC
Confidence 34667776543 455666778888899999999999999999999998643
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-53 Score=416.61 Aligned_cols=249 Identities=24% Similarity=0.352 Sum_probs=221.6
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhc--CCCccccc
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVH--GAGDVSLM 82 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~--~~~~~~~~ 82 (539)
+.++ +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.... ........
T Consensus 2 i~~~--~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 79 (253)
T 1uiy_A 2 VQVE--KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRH 79 (253)
T ss_dssp EEEE--CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHH
T ss_pred EEEE--eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHH
Confidence 4556 5889999999996 79999999999999999999999999999999999999999999886531 11100011
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|+|++|..+|+++
T Consensus 80 ~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l 157 (253)
T 1uiy_A 80 SLSLMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDL 157 (253)
T ss_dssp HHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHH
T ss_pred HHHHHHHH-HHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHH
Confidence 01144566 679999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
++||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 158 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 204 (253)
T 1uiy_A 158 LLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLR--------------------------------- 204 (253)
T ss_dssp HHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH---------------------------------
T ss_pred HHhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999875432
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+|++
T Consensus 205 ---~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~~kr~p~~ 253 (253)
T 1uiy_A 205 ---LTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF 253 (253)
T ss_dssp ---HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred ---HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCcCCCCC
Confidence 4577888888889999999999999999999999999999999998763
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=417.15 Aligned_cols=247 Identities=24% Similarity=0.312 Sum_probs=201.0
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEec-CCCCcccCCCchhhhhhcCCCcccccc
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTG-NGGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g-~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
+.++. +++|++||||||+ .|+||.+|+++|.++++.++.|+++|+||||| .|++||+|+|++++...........+.
T Consensus 2 v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 80 (250)
T 2a7k_A 2 VFEEN-SDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWI 80 (250)
T ss_dssp EEEEE-ETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHH
T ss_pred eEEEe-eCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHH
Confidence 67788 7899999999995 79999999999999999999999999999999 999999999999986532111101222
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (539)
...++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ +|+|++|..+|++++
T Consensus 81 ~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l~ 158 (250)
T 2a7k_A 81 DRVIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEII 158 (250)
T ss_dssp HHHHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHHH
Confidence 2344566 67999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchh
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (539)
+||++++|+||+++||||+|+|++++.+++.+++++|++.||.+++
T Consensus 159 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------- 204 (250)
T 2a7k_A 159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI---------------------------------- 204 (250)
T ss_dssp HHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH----------------------------------
T ss_pred HcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999875443
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....+++++++.|.+.+..++.|+|++|++++|++||+
T Consensus 205 --~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~af~ekr~ 250 (250)
T 2a7k_A 205 --NTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKNVLGKKY 250 (250)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCC--------------------
T ss_pred --HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCC
Confidence 3466777776677889999999999999999999999999999984
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-54 Score=421.34 Aligned_cols=247 Identities=25% Similarity=0.321 Sum_probs=193.1
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
+++.+.++. +++|++||||||+ +|+||.+|+++|.+++++++.|+++|+|||||.|+.||+|+|++++........ .
T Consensus 10 ~~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~ 87 (258)
T 3lao_A 10 GPGRVTREQ-RGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASG-F 87 (258)
T ss_dssp SSCCEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTB-C
T ss_pred CCCeEEEEE-ECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhh-H
Confidence 356799999 7999999999996 699999999999999999999999999999999999999999999876433221 1
Q ss_pred ccchHHHHHHHHHH-HhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLI-EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i-~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.+.....+.+ .++ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|
T Consensus 88 ~~~~~~~~~~-~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 166 (258)
T 3lao_A 88 RYPDGGVDPW-GVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDA 166 (258)
T ss_dssp CCCTTCCCTT-SCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHHHH
T ss_pred HHHHHHHHHH-HHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 2222222344 568 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|+|++++.+++.++|++|++.||.+++
T Consensus 167 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 216 (258)
T 3lao_A 167 MRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVR------------------------------ 216 (258)
T ss_dssp HHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH------------------------------
T ss_pred HHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~ 287 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|+
T Consensus 217 ------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~eg~~AF~ 258 (258)
T 3lao_A 217 ------AALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAMV 258 (258)
T ss_dssp ------HHHHHHHHHTC-------------------------------
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHhhC
Confidence 457788888888999999999999999999999999999995
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-54 Score=419.40 Aligned_cols=244 Identities=25% Similarity=0.379 Sum_probs=200.8
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.+.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.... .
T Consensus 8 ~~~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~------~ 80 (256)
T 3pe8_A 8 SPVLLVDT-TDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTT------E 80 (256)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----------
T ss_pred CCcEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhH------H
Confidence 56799999 8999999999996 69999999999999999999999999999999999999999999876431 1
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
..... .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 81 ----~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 155 (256)
T 3pe8_A 81 ----LPDIS-PKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARR 155 (256)
T ss_dssp --------C-CCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHHHH
T ss_pred ----HHHHH-HHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHHHH
Confidence 11223 4588999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|+|++++.+++.++|++|++.||.+++
T Consensus 156 l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 203 (256)
T 3pe8_A 156 MSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVR-------------------------------- 203 (256)
T ss_dssp HHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999986543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHH---HhCCHHHHhHHHHHHhhhhccC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKE---LVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~---~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|...+.. ...++|++|++.+|++||+|.+
T Consensus 204 ----~~K~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~d~~e~~~aflek~k~~~ 255 (256)
T 3pe8_A 204 ----ALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASRASVIERGRSQV 255 (256)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred ----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCccC
Confidence 456778888888899999999999665 4778888999999999999886
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-53 Score=420.25 Aligned_cols=247 Identities=21% Similarity=0.287 Sum_probs=222.7
Q ss_pred CCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-cccCCCchhhhhhcCCCcc--
Q 009256 3 APRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGR-FSGGFDINVFQKVHGAGDV-- 79 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~-F~aG~Dl~~~~~~~~~~~~-- 79 (539)
++.|.++. +++|++||||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|+. ||+|+|++++.........
T Consensus 7 ~~~v~~~~-~~~Va~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~ 85 (289)
T 3h0u_A 7 YETIKARL-DGTVLSATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAG 85 (289)
T ss_dssp CSSEEEEE-ETTEEEEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTS
T ss_pred CCeEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhH
Confidence 67899999 7999999999999999999999999999999999999999999999865 5567799998653221100
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
..+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|..+
T Consensus 86 ~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~ 164 (289)
T 3h0u_A 86 GPGDASLGMLF-RKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGRGR 164 (289)
T ss_dssp STTCCSHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHH-HHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCHHH
Confidence 12333455677 7799999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 165 A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~----------------------------- 215 (289)
T 3h0u_A 165 ALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALI----------------------------- 215 (289)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHH-----------------------------
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHh
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFA 288 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~ 288 (539)
.+|+.++.... +++++++.|...+..++.|+|++|++++|+|
T Consensus 216 -------~~K~~l~~~~~-~l~~~l~~e~~~~~~~~~s~d~~egi~AFle 257 (289)
T 3h0u_A 216 -------AAKSAINAISL-PAPAEVRADAALFQQLVRGEKVQQRTAELFK 257 (289)
T ss_dssp -------HHHHHHHHHHS-CCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred -------HHHHHHHhhcc-cHHHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 45677888777 8999999999999999999999999999999
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=417.65 Aligned_cols=254 Identities=33% Similarity=0.428 Sum_probs=224.4
Q ss_pred CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 2 ~~~~v~~~~~--~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
+|+.+.++.. .++|++||||||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~- 80 (260)
T 1mj3_A 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD- 80 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchH-
Confidence 4667777762 5789999999995 79999999999999999999999999999999999999999999875321100
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
.+...+...+ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 81 --~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 157 (260)
T 1mj3_A 81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL 157 (260)
T ss_dssp --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred --HHHHHHHHHH-HHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHHH
Confidence 0000011223 4588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|+++++||++++|+||+++||||+|+|++++.+++.+++++|+..||.+++
T Consensus 158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 208 (260)
T 1mj3_A 158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA----------------------------- 208 (260)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred HHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999875443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.+...+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 209 -------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~~kr~p~~~ 258 (260)
T 1mj3_A 209 -------MAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK 258 (260)
T ss_dssp -------HHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred -------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCCCCCC
Confidence 45788888888899999999999999999999999999999999988753
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-53 Score=413.82 Aligned_cols=242 Identities=26% Similarity=0.354 Sum_probs=212.0
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccc
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
++.|.++. +++|++||||||+ .|+||.+|+.+|.++++++++| ++|+|||||.|++||+|+|++... ....
T Consensus 20 ~~~i~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~------~~~~ 91 (264)
T 3he2_A 20 GSMIGITQ-AEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDA------FAAD 91 (264)
T ss_dssp --CEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCT------TGGG
T ss_pred CCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccch------hhHH
Confidence 35688999 7999999999996 7999999999999999999988 999999999999999999998311 1122
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|++
T Consensus 92 ~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A~~ 170 (264)
T 3he2_A 92 YPDRLIELH-KAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA 170 (264)
T ss_dssp HHHHHHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhCHHHHHH
Confidence 334455666 7799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
|++||++++|+||+++||||+|++ .+++.++|++|++.||.+++
T Consensus 171 llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~-------------------------------- 214 (264)
T 3he2_A 171 MLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQ-------------------------------- 214 (264)
T ss_dssp HHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHH--------------------------------
Confidence 999999999999999999999997 46789999999999886543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.. .++++.++.|...+..++.|+|++|++.+|+|||+|++.
T Consensus 215 ----~~K~~l~~~--~~~~~~~~~e~~~~~~~~~s~d~~Eg~~AF~ekR~P~f~ 262 (264)
T 3he2_A 215 ----HAKRVLNDD--GAIEEAWPAHKELFDKAWGSQDVIEAQVARMEKRPPKFQ 262 (264)
T ss_dssp ----HHHHHHHTS--SCSCCCCHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred ----HHHHHHHcc--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 346677765 357788899999999999999999999999999999864
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-53 Score=414.60 Aligned_cols=250 Identities=24% Similarity=0.325 Sum_probs=207.0
Q ss_pred CCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcC--C-C-
Q 009256 2 AAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHG--A-G- 77 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~--~-~- 77 (539)
+++.+.++..+++|++||||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... . .
T Consensus 4 ~~~~~~~~~~~~~v~~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 83 (263)
T 3l3s_A 4 SQDGLLGEVLSEGVLTLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGR 83 (263)
T ss_dssp ----CEEEEESSSEEEEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSH
T ss_pred CccceEEEEeeCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccH
Confidence 45667777657899999999996699999999999999999999999999999999999999999998865321 0 1
Q ss_pred -cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCH
Q 009256 78 -DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGL 156 (539)
Q Consensus 78 -~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 156 (539)
....+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|+|++|.
T Consensus 84 ~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~ 161 (263)
T 3l3s_A 84 AFVTDLFEACSALM-LDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGR 161 (263)
T ss_dssp HHHHHHHHHHHHHH-HHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCH
Confidence 1112233345666 67999999999999999999999999999999999999999999999999 56789999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 009256 157 SKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKK 236 (539)
Q Consensus 157 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (539)
.+|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 162 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------- 214 (263)
T 3l3s_A 162 RAVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLR--------------------------- 214 (263)
T ss_dssp HHHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHH---------------------------
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHH---------------------------
Confidence 99999999999999999999999999999999999999999999999876543
Q ss_pred hCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhh
Q 009256 237 TAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQ 289 (539)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~k 289 (539)
.+|+.++.....+++++++.|...+..++.|+|++|+++||.+.
T Consensus 215 ---------~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~Eg~~Af~~~ 258 (263)
T 3l3s_A 215 ---------RGLETLNRHLELPLEQAYALATPVMVEHFMDPGRRHLDWIDEGH 258 (263)
T ss_dssp ---------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHC--------------
T ss_pred ---------HHHHHHHhhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcc
Confidence 45788888888899999999999999999999999999999864
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-53 Score=414.16 Aligned_cols=246 Identities=28% Similarity=0.435 Sum_probs=216.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
|+ +.|.++. +++|++||||||+.|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++..... ....
T Consensus 22 m~-~~v~~~~-~~~Va~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~ 98 (277)
T 4di1_A 22 MN-EFVSVVA-DQGLATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNA-PEAD 98 (277)
T ss_dssp -C-CSEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCH-HHHH
T ss_pred CC-ceEEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccCh-HHHH
Confidence 44 5789999 7999999999996699999999999999999999999999999999999999999999875421 1122
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+
T Consensus 99 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ 177 (277)
T 4di1_A 99 TAARVRLEAI-DAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSRAK 177 (277)
T ss_dssp HHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHHHH
Confidence 2333445666 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 178 ~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 226 (277)
T 4di1_A 178 ELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRALA------------------------------- 226 (277)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHH-------------------------------
T ss_pred HHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999876543
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhcc--CCC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATS--KVP 296 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~--~~~ 296 (539)
.+|++++.....+++++++.|...+..++.|+ |||+|+ +..
T Consensus 227 -----~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~----------ekR~P~~~f~g 269 (277)
T 4di1_A 227 -----AAKAVINDVFELEATERAAAERRRYVELFAAG----------QRGPDGRGPGG 269 (277)
T ss_dssp -----HHHHHHHHTTTSCHHHHHHHHHHHHHHTTSGG----------GC---------
T ss_pred -----HHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCc----------ccCCCcCcCCC
Confidence 45788888888999999999999999999998 999988 543
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=413.84 Aligned_cols=254 Identities=26% Similarity=0.416 Sum_probs=221.3
Q ss_pred CcEEEEE---ecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc
Q 009256 4 PRVTMEV---GNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 4 ~~v~~~~---~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~ 78 (539)
..+.++. .+++|++||||||+ .|+||.+|+++|.++++.+++|+++|+|||||.| ++||+|+|++++..... ..
T Consensus 8 ~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~ 86 (272)
T 1hzd_A 8 DELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSS-SE 86 (272)
T ss_dssp CSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCH-HH
T ss_pred CcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccCh-HH
Confidence 3455553 25789999999996 7999999999999999999999999999999998 79999999998754221 11
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+....++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+
T Consensus 87 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 165 (272)
T 1hzd_A 87 VGPFVSKIRAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSL 165 (272)
T ss_dssp HHHHHHHHHHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhCHHH
Confidence 112223344566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchH----HHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHH
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEEL----LKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l----~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (539)
|+++++||++++|+||+++||||+|+|++++ .+.+.+++++|+..||.+++
T Consensus 166 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~~------------------------- 220 (272)
T 1hzd_A 166 AKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMR------------------------- 220 (272)
T ss_dssp HHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHH-------------------------
T ss_pred HHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHHH-------------------------
Confidence 9999999999999999999999999999875 45778888888887764432
Q ss_pred HHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 235 KKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|++++.+...+++++++.|...+..++.|+|++|++++|++||+|++.
T Consensus 221 -----------~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~ 270 (272)
T 1hzd_A 221 -----------VAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK 270 (272)
T ss_dssp -----------HHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred -----------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCCCCCC
Confidence 45778888888889999999999999999999999999999999998863
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-52 Score=405.68 Aligned_cols=243 Identities=19% Similarity=0.299 Sum_probs=206.1
Q ss_pred cEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccc
Q 009256 5 RVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 5 ~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
.|.++. +++|++||||||+ .|+||.+|+++|.++++.+++ +++|+|||||.|++||+|+|++++....... .....
T Consensus 8 ~v~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~~~~~ 84 (254)
T 3isa_A 8 PLAIER-RPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGD-LLLRM 84 (254)
T ss_dssp SEEEEE-CSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHH-HHHHH
T ss_pred eEEEEE-ECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchh-HHHHH
Confidence 488999 8999999999996 799999999999999999987 5899999999999999999999986532111 11111
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ 163 (539)
...++++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| ++++|+|++|..+|++++
T Consensus 85 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l~ 160 (254)
T 3isa_A 85 VRIEMLL-QRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSIL 160 (254)
T ss_dssp HHHHHHH-HHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHH-HHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHHH
Confidence 2234556 679999999999999999999999999999999999999999999999998 479999999999999999
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchh
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQ 243 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 243 (539)
+||++++|+||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 161 ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------------- 206 (254)
T 3isa_A 161 GSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRA---------------------------------- 206 (254)
T ss_dssp TTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHH----------------------------------
T ss_pred HhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCC
Q 009256 244 HQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPN 297 (539)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~ 297 (539)
.+|+.+. ++.++.|...+..++.++|++|++.+|++||+|+|.+.
T Consensus 207 --~~K~~l~-------~~~~~~e~~~~~~~~~s~d~~egi~af~ekr~p~~~~~ 251 (254)
T 3isa_A 207 --TLHRVLR-------DDHDDADLAALARSAAQPGFKARIRDYLAQPAAEGHHH 251 (254)
T ss_dssp --HHHHHHS-------CCCHHHHHHHHHHHHHSTTHHHHHHHHHHC--------
T ss_pred --HHHHHHh-------hhhHHHHHHHHHHHhCCHHHHHHHHHHHhcCCCCCCCC
Confidence 2344442 34567788999999999999999999999999998653
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=422.23 Aligned_cols=290 Identities=22% Similarity=0.307 Sum_probs=226.4
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCc--
Q 009256 3 APRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGD-- 78 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~-- 78 (539)
.+.|.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++........
T Consensus 5 ~~~v~~~~-~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~ 83 (363)
T 3bpt_A 5 AEEVLLGK-KGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKI 83 (363)
T ss_dssp CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCC
T ss_pred CcceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHH
Confidence 45688998 7999999999996 7999999999999999999999999999999998 89999999999865321111
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
...+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|. +
T Consensus 84 ~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~-~ 161 (363)
T 3bpt_A 84 APVFFREEYMLN-NAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGK-L 161 (363)
T ss_dssp HHHHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTT-H
T ss_pred HHHHHHHHHHHH-HHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHH-H
Confidence 111222223555 67999999999999999999999999999999999999999999999999999999999999997 9
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcc------------------------
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRT------------------------ 214 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~------------------------ 214 (539)
|++|++||++|+|+||+++||||+|||++++.+.+..+++ +...++..+..+++.
T Consensus 162 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~~~l~~-l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~ 240 (363)
T 3bpt_A 162 GYFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLEEDLLA-LKSPSKENIASVLENYHTESKIDRDKSFILEEHMDKINS 240 (363)
T ss_dssp HHHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHH
Confidence 9999999999999999999999999999998876554432 111111111111000
Q ss_pred -cccCChHHHHHHH-----HHHHHHHH-HhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 009256 215 -DKLGSLSEAREVL-----KLARLQAK-KTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (539)
Q Consensus 215 -~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~ 287 (539)
-..+...+..+.+ .++...++ -......+...+|+.++.+...+++++++.|...+..++.|+|++||+++|+
T Consensus 241 ~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~sP~al~~~k~~l~~~~~~~l~~~l~~E~~~~~~~~~s~D~~EGv~Afl 320 (363)
T 3bpt_A 241 CFSANTVEEIIENLQQDGSSFALEQLKVINKMSPTSLKITLRQLMEGSSKTLQEVLTMEYRLSQACMRGHDFHEGVRAVL 320 (363)
T ss_dssp HTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTSSHHHHHHHHHT
T ss_pred HhCCCCHHHHHHHHhccChHHHHHHHHHHHhCCchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCccHHhhhhhee
Confidence 0000001000011 11112222 2334445788899999999999999999999999999999999999999999
Q ss_pred -hh-hhccCCC
Q 009256 288 -AQ-RATSKVP 296 (539)
Q Consensus 288 -~k-r~~~~~~ 296 (539)
+| |+|++.+
T Consensus 321 ~eK~r~P~~~~ 331 (363)
T 3bpt_A 321 IDKDQSPKWKP 331 (363)
T ss_dssp TSCCCCCCCSS
T ss_pred eCCCCCCCCCC
Confidence 78 8888754
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-52 Score=428.23 Aligned_cols=287 Identities=18% Similarity=0.229 Sum_probs=227.2
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCC-----
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGA----- 76 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~----- 76 (539)
+.|.++. +++|++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.| ++||+|+|++++......
T Consensus 42 ~~v~~~~-~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~ 120 (407)
T 3ju1_A 42 QTLATAS-GKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQV 120 (407)
T ss_dssp EEEECTT-SCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred ceEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccccc
Confidence 3466666 7899999999996 6999999999999999999999999999999999 799999999998653210
Q ss_pred -CcccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 77 -GDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 77 -~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
.....+.....+++ .+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|
T Consensus 121 ~~~~~~~~~~~~~l~-~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~g 199 (407)
T 3ju1_A 121 TEVAKVFFEEEYRLD-YLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMPG 199 (407)
T ss_dssp CHHHHHHHHHHHHHH-HHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSST
T ss_pred HHHHHHHHHHHHHHH-HHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhhH
Confidence 11112222234555 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHH---H----------------HHHHHHHHHhcC----c-------
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLK---V----------------SRLWALDIAARR----K------- 205 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~---~----------------a~~~a~~la~~~----~------- 205 (539)
.+|++|++||++|+|+||+++||||+|||++++.+ + +.++++++.... +
T Consensus 200 -~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~L~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~l~~~ 278 (407)
T 3ju1_A 200 -KMGLFLGLTAYHMNAADACYVGLADHYLNRDDKELMFDAMATLDWSDSPALNHQRLDTMINELSNQVDIPKGDSVLAES 278 (407)
T ss_dssp -THHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHSSCCCSCHHHHHHHHHHHHHHHHTTCSSCCCCCHHHHT
T ss_pred -HHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHHHHHHHhcccccccccchhHHHHHHHHHhhhhccccCCchhHHHH
Confidence 99999999999999999999999999999999887 3 333443332211 0
Q ss_pred -hhhhhhhcccccCChHHHHHHH-------HHHHHH-HHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCC
Q 009256 206 -PWIRSLHRTDKLGSLSEAREVL-------KLARLQ-AKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVML 276 (539)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s 276 (539)
..+..++. .++.+..+.+ .++... .+-......+...+|+.++++...+++++++.|...+..++.+
T Consensus 279 ~~~I~~~f~----~sv~~i~~~L~~~~~~~~~a~~~a~~la~~sP~sl~~tk~~l~~~~~~~l~~~l~~E~~~~~~~~~s 354 (407)
T 3ju1_A 279 QEMIDRLMA----GSLTDIVTRMSTLSTDEAWLSKACATMLAGSPISWHLAYIQTQLGTKLSLAQCFKWELTVSVNVCAK 354 (407)
T ss_dssp HHHHHHHTC----SCHHHHHHHHHHCCCSCHHHHHHHHHHHHSCHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCHHHHHHHHHhcccccHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhCC
Confidence 01111111 1111111001 011111 1122345668889999999999999999999999999999999
Q ss_pred HHHHhHHHHHH-hh-hhccCCCC
Q 009256 277 DTSRGLVHVFF-AQ-RATSKVPN 297 (539)
Q Consensus 277 ~~~~~~~~af~-~k-r~~~~~~~ 297 (539)
+|++||++||+ +| |+|+|.+.
T Consensus 355 ~D~~EGvrAflidKdr~P~w~~~ 377 (407)
T 3ju1_A 355 GDFCEGVRALLIDKDKQPKWQFA 377 (407)
T ss_dssp SSHHHHHHHHTTSCCCCCCCSSS
T ss_pred HHHHHHHHHHHhcCCcCCCCCCC
Confidence 99999999998 88 89988763
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-51 Score=399.43 Aligned_cols=238 Identities=23% Similarity=0.296 Sum_probs=213.7
Q ss_pred EEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccch
Q 009256 6 VTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPD 84 (539)
Q Consensus 6 v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (539)
..++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++....... . ..
T Consensus 5 ~~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~-~-~~-- 79 (243)
T 2q35_A 5 QLTEL-GNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGE-V-EV-- 79 (243)
T ss_dssp EEEEE-ETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTC-C-CC--
T ss_pred EEEEe-eCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchh-h-HH--
Confidence 34566 7899999999995 79999999999999999999999999999999999999999999886532211 1 11
Q ss_pred HHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHH
Q 009256 85 VSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMML 164 (539)
Q Consensus 85 ~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 164 (539)
++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..+|+++++
T Consensus 80 --~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l 156 (243)
T 2q35_A 80 --LDLS-GLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIY 156 (243)
T ss_dssp --CCCH-HHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHHHH
T ss_pred --HHHH-HHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHHHH
Confidence 2345 6689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQH 244 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 244 (539)
||++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 157 tg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------------- 201 (243)
T 2q35_A 157 TGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLV----------------------------------- 201 (243)
T ss_dssp HCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHH-----------------------------------
T ss_pred cCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHH-----------------------------------
Confidence 999999999999999999999999999999999999999875443
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHH
Q 009256 245 QACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFF 287 (539)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~ 287 (539)
.+|+.++.....+++++++.|...+..++.|+|++|++++|+
T Consensus 202 -~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~a~~ 243 (243)
T 2q35_A 202 -ALKQHLSADIKAKFPEAIKKELEIHQVTFNQPEIASRIQQEF 243 (243)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTHHHHHHTTC
T ss_pred -HHHHHHHHhhhcCHHHHHHHHHHHHHHHhCCHHHHHHHhhcC
Confidence 346677776666788999999999999999999999999874
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-51 Score=406.22 Aligned_cols=244 Identities=18% Similarity=0.183 Sum_probs=205.0
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc-
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD- 78 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~- 78 (539)
|+|+.+.++. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++........
T Consensus 6 m~~~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~ 84 (280)
T 1pjh_A 6 RQNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTN 84 (280)
T ss_dssp CCBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------
T ss_pred ccCCceEEEE-ECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhccccccc
Confidence 5667899999 7999999999995 799999999999999999999999999999999999999999998854211110
Q ss_pred --cc---ccc----hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEee-CCceEeCCcccCCCCCCcchhh
Q 009256 79 --VS---LMP----DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQ 148 (539)
Q Consensus 79 --~~---~~~----~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~ 148 (539)
.. .+. ...++++ .+|.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~ 163 (280)
T 1pjh_A 85 KYPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV 163 (280)
T ss_dssp CCSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHH
T ss_pred chhhhHHHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHH
Confidence 00 011 1123555 67999999999999999999999999999999999 9999999999999999999999
Q ss_pred ccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcc-----hHHHHHH-HHHHHHHhcCchhhhhhhcccccCChHH
Q 009256 149 RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSE-----ELLKVSR-LWALDIAARRKPWIRSLHRTDKLGSLSE 222 (539)
Q Consensus 149 ~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~-----~l~~~a~-~~a~~la~~~~~~~~~~~~~~~~~~~~~ 222 (539)
+|+|++|..+|+++++||++++|+||+++||||+|||++ ++.+++. +++++|++.||.+++
T Consensus 164 ~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~------------- 230 (280)
T 1pjh_A 164 SLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCL------------- 230 (280)
T ss_dssp HHHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHH-------------
T ss_pred HHHHHhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHH-------------
Confidence 999999999999999999999999999999999999985 7888885 999999999886543
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 223 AREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++... ...++ ...++|+++++.+|++||+|..
T Consensus 231 -----------------------~~K~~l~~~~----~~~l~--------~~~~~d~~e~~~af~~kr~~e~ 267 (280)
T 1pjh_A 231 -----------------------GMKKLLKSNH----IDAFN--------KANSVEVNESLKYWVDGEPLKR 267 (280)
T ss_dssp -----------------------HHHHHHHTTT----HHHHH--------HHHHHHHHHHHHHHHHTHHHHH
T ss_pred -----------------------HHHHHHHHhH----HHHHH--------HhhhHHHHHHHHHHhCCccHHH
Confidence 3355555432 22222 1357899999999999998843
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=394.09 Aligned_cols=238 Identities=16% Similarity=0.214 Sum_probs=204.8
Q ss_pred CCcEEEEEecC-cEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 3 APRVTMEVGND-GVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~-~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
++.+.++. ++ +|++||||||+ .|++|.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++..........
T Consensus 22 ~~~i~~~~-~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~ 100 (263)
T 2j5g_A 22 YENLHFHR-DENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWD 100 (263)
T ss_dssp CTTEEEEE-CTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHH
T ss_pred CCeEEEEE-cCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHH
Confidence 56688999 67 99999999995 69999999999999999999999999999999999999999999875421111111
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeC-CcccCCCCCCcchhhccccccCHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
.+.....+++ .++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++|..+|
T Consensus 101 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~~~A 178 (263)
T 2j5g_A 101 KTYWEGKKVL-QNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRG 178 (263)
T ss_dssp HHHHHHHHHH-HHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCHHHH
Confidence 1222234566 6799999999999999999 5999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
+++++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 179 ~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------ 228 (263)
T 2j5g_A 179 RYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLR------------------------------ 228 (263)
T ss_dssp HHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred HHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhh
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQR 290 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr 290 (539)
.+|+.++.....+++++++.| ...||+++|++||
T Consensus 229 ------~~K~~l~~~~~~~l~~~l~~e-----------~~~eg~~af~~~~ 262 (263)
T 2j5g_A 229 ------YTRVALTQRLKRLVNEGIGYG-----------LALEGITATDLRN 262 (263)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHTTC
T ss_pred ------HHHHHHHhhhhccHHHHHHHH-----------HHHhhHHHHHhcc
Confidence 345666665555555555544 4569999999987
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-50 Score=387.88 Aligned_cols=230 Identities=23% Similarity=0.253 Sum_probs=201.4
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
|+ +.|.++. +++|++||||||+.|+||.+|+++|.++++++++| ++|+|||||.|++||+|+|++++..... ....
T Consensus 3 M~-~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~ 78 (233)
T 3r6h_A 3 MS-GPVTYTH-DDAIGVIRMDDGKVNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEA-KPAI 78 (233)
T ss_dssp ---CCEEEEE-ETTEEEEEECCSSSCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---C-HHHH
T ss_pred CC-CceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccCh-HHHH
Confidence 55 5789999 79999999999988999999999999999999987 6999999999999999999999865321 1122
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+....++++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+
T Consensus 79 ~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a~ 157 (233)
T 3r6h_A 79 DMLRGGFELS-YRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQ 157 (233)
T ss_dssp HHHHHHHHHH-HHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHH-HHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHHH
Confidence 2333445666 779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 158 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~------------------------------- 206 (233)
T 3r6h_A 158 QAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHN------------------------------- 206 (233)
T ss_dssp HHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred HHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999886543
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHH
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFK 271 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~ 271 (539)
.+|+.++.....+++++++.|...|.
T Consensus 207 -----~~K~~l~~~~~~~l~~~l~~e~~~f~ 232 (233)
T 3r6h_A 207 -----ATKLRARAEALKAIRAGIDGIEAEFG 232 (233)
T ss_dssp -----HHHHHTTHHHHHHHHHHHHTSHHHHC
T ss_pred -----HHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 44667777777778888888877663
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-50 Score=384.44 Aligned_cols=225 Identities=20% Similarity=0.283 Sum_probs=199.9
Q ss_pred CcEEEEEecCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
+.+.++. +++|++||||||+.|++|.+|+++|.+++++++.| +|+|||||.|++||+|+|++++.... .....+.
T Consensus 6 ~~v~~~~-~~~v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~~--~~~~~~~ 80 (232)
T 3ot6_A 6 DLVSYHL-DDGVATLTLNNGKVNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSSA--EAAINLV 80 (232)
T ss_dssp HHEEEEE-ETTEEEEEECCTTTTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHCH--HHHHHHH
T ss_pred cceEEEE-ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhCh--HHHHHHH
Confidence 4588898 79999999999988999999999999999999976 48999999999999999999987521 1122233
Q ss_pred hHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHH
Q 009256 84 DVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEM 162 (539)
Q Consensus 84 ~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l 162 (539)
...++++ +++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|+++++++|++++|..+|+++
T Consensus 81 ~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~a~~l 159 (232)
T 3ot6_A 81 AQGSTLA-RRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRS 159 (232)
T ss_dssp HHHHHHH-HHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHH-HHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHHHHHH
Confidence 3445666 7799999999999999999999999999999999998 8999999999999888889999999999999999
Q ss_pred HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 160 ~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~--------------------------------- 206 (232)
T 3ot6_A 160 VINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHK--------------------------------- 206 (232)
T ss_dssp HTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH---------------------------------
T ss_pred HHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHH---------------------------------
Confidence 99999999999999999999999999999999999999999986543
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVF 270 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~ 270 (539)
.+|+.++.....+++++++.|.+.|
T Consensus 207 ---~~K~~l~~~~~~~l~~~l~~E~~~~ 231 (232)
T 3ot6_A 207 ---KTKLKVRKGLLDTLDAAIEQDRQHM 231 (232)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHhHhHHHHHHHHHHHhc
Confidence 4567788887788889998887754
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-49 Score=393.05 Aligned_cols=232 Identities=23% Similarity=0.349 Sum_probs=219.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHH-HHHHHhhcccccCCc-cC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-KANNALKMLKGVLDY-SE 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~ 384 (539)
.++||+|||+|.||++||..++.+|++|++||++++.++++.+.+++.+..++++|.++.. ..+..+++++.++++ ++
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a 84 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA 84 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence 4679999999999999999999999999999999999999999999999999999988754 566677899999998 67
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++||+||||+||++++|+++|++|++++++++||+||||++++++++..+.+|+|++|+||||||+.+++|||++++.|
T Consensus 85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m~LVEiv~g~~T 164 (319)
T 3ado_A 85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYIPLVELVPHPET 164 (319)
T ss_dssp TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTCCEEEEEECTTC
T ss_pred hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCccccchHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCC---cchhhccccC
Q 009256 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLP---IGPFQEGGCW 538 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~---~Gpf~~~d~~ 538 (539)
++++++++..+++.+|+.|+++ +|.|||++||++.++++||++++++|+ +++|||++| .++|+| ||||+++|..
T Consensus 165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~NRl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~~~a~mGPf~~~Dl~ 244 (319)
T 3ado_A 165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN 244 (319)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHHHTTSCHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCCCCcchhhhhhhc
Confidence 9999999999999999999865 899999999999999999999999986 999999999 688886 9999999975
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=389.94 Aligned_cols=254 Identities=19% Similarity=0.193 Sum_probs=214.9
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCC-----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEecCCCCcccCCCchhhh
Q 009256 3 APRVTMEVG-NDGVAIITLINPP-----VNALAIPIVAGLKDKFEEATS-----RDDVKAIVLTGNGGRFSGGFDINVFQ 71 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~-----~Nal~~~~~~~l~~~~~~~~~-----d~~v~~vvl~g~g~~F~aG~Dl~~~~ 71 (539)
|+++.+..+ +++|++||||||+ +|+||.+|+.+|.++++.++. |+++|+|||||.|++||+|+|++++.
T Consensus 29 y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~ 108 (305)
T 3m6n_A 29 GSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFC 108 (305)
T ss_dssp CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHH
T ss_pred CceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHH
Confidence 456666443 7899999999994 459999999999999999987 58999999999999999999999986
Q ss_pred hhcCCCcccc---cchHHHHHHHHHH---HhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcc
Q 009256 72 KVHGAGDVSL---MPDVSVELVVNLI---EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFG 145 (539)
Q Consensus 72 ~~~~~~~~~~---~~~~~~~~~~~~i---~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g 145 (539)
.......... +.......+ ..+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g 187 (305)
T 3m6n_A 109 QLIREGDRARLLDYAQRCVRGV-HAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG 187 (305)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-HHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred hccccccHHHHHHHHHHHHHHH-HHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence 5421111111 111122223 223 468999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHH
Q 009256 146 GTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEARE 225 (539)
Q Consensus 146 ~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~ 225 (539)
++++|+|++|..+|++|++||++|+|+||+++||||+|||++++.+++.++|++|++ +|.++
T Consensus 188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~-~p~a~----------------- 249 (305)
T 3m6n_A 188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKR-TPHAW----------------- 249 (305)
T ss_dssp HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTT-CHHHH-----------------
T ss_pred HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhh-ChHHH-----------------
Confidence 999999999999999999999999999999999999999999999999999999986 55432
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 226 VLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 226 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
..+|+.++.....+++++++.|...+..++.|+|....+..++-+++.++
T Consensus 250 -------------------~~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~~~~m~~l~~~q~~~ 299 (305)
T 3m6n_A 250 -------------------AAMQQVREMTTAVPLEEMMRITEIWVDTAMQLGEKSLRTMDRLVRAQSRR 299 (305)
T ss_dssp -------------------HHHHHHHHTTTCCCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--
T ss_pred -------------------HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhc
Confidence 24578888888999999999999999999999999888887776666554
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=393.79 Aligned_cols=204 Identities=25% Similarity=0.334 Sum_probs=174.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+|++|.++. +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus 32 ~~~~~i~~e~-~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~ 110 (333)
T 3njd_A 32 DNLKTMTYEV-TDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGG 110 (333)
T ss_dssp TSCSSEEEEE-ETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC-------------
T ss_pred CCCCeEEEEE-ECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccc
Confidence 3567899999 7999999999996 7999999999999999999999999999999999999999999998653221100
Q ss_pred -----------------------------cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCce
Q 009256 80 -----------------------------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130 (539)
Q Consensus 80 -----------------------------~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~ 130 (539)
..+.....+++ ..|.++||||||+|||+|+|||++|+++||+|||+++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~ 189 (333)
T 3njd_A 111 GSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGF-ASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAADAK 189 (333)
T ss_dssp --CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHH-THHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTTCE
T ss_pred ccccccccccccccccccccccccchhhHHHHHHHHHHHH-HHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCCCe
Confidence 00112233445 568999999999999999999999999999999999999
Q ss_pred EeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 131 f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
|++||+++|++|++| +|++++|..+|++|++||++|+|+||+++||||+|||++++.+++.++|++|++.|+.+++
T Consensus 190 f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia~~~~~al~ 265 (333)
T 3njd_A 190 IGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIAAMPVNQLI 265 (333)
T ss_dssp EECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred eechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999876 5899999999999999999999999999999999999999999999999999999987654
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=379.26 Aligned_cols=237 Identities=18% Similarity=0.237 Sum_probs=201.3
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccccc
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLM 82 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (539)
+.+.++. +++|++||||||+ .|++|.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++... .......+
T Consensus 16 ~~i~~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-~~~~~~~~ 93 (257)
T 1szo_A 16 ENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLG-TPHDWDEI 93 (257)
T ss_dssp TTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCS-SHHHHHHH
T ss_pred ceEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcC-CHHHHHHH
Confidence 5689999 7899999999995 6999999999999999999999999999999999999999999987531 11111112
Q ss_pred chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeC-CcccCCCCCCcchhhccccccCHHHHHH
Q 009256 83 PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGL-PELTLGVIPGFGGTQRLPRLVGLSKAIE 161 (539)
Q Consensus 83 ~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~r~vG~~~a~~ 161 (539)
.....+++ .++.++||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|+|++|..+|++
T Consensus 94 ~~~~~~~~-~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~~ 171 (257)
T 1szo_A 94 IFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRY 171 (257)
T ss_dssp HHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHH-HHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHHH
Confidence 22234566 6799999999999999999 5999999999999999999999 9999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNM 241 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (539)
+++||++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 172 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~-------------------------------- 219 (257)
T 1szo_A 172 FLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR-------------------------------- 219 (257)
T ss_dssp HHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH--------------------------------
T ss_pred HHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999886543
Q ss_pred hhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhh
Q 009256 242 PQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRA 291 (539)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~ 291 (539)
.+|+.++.....+++++++.|. ..|++.+|-.+-+
T Consensus 220 ----~~K~~l~~~~~~~l~~~l~~~~-----------~~eg~~a~~~~~~ 254 (257)
T 1szo_A 220 ----YARKVLTRQLRRVMEADLSLGL-----------AHEALAAIDLGME 254 (257)
T ss_dssp ----HHHHHHSHHHHHHHHHHHHHHH-----------HHHHHHHHHHC--
T ss_pred ----HHHHHHHhhhhccHHHHHHHHH-----------HHhhhhhhhcccc
Confidence 3456666655555666665554 3378888877644
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-48 Score=399.89 Aligned_cols=246 Identities=23% Similarity=0.214 Sum_probs=200.7
Q ss_pred CcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--------C-CCcccCCCchhhhhh
Q 009256 4 PRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--------G-GRFSGGFDINVFQKV 73 (539)
Q Consensus 4 ~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~--------g-~~F~aG~Dl~~~~~~ 73 (539)
+.|.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||. | ++||+|+|++++...
T Consensus 167 ~~v~~e~-~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~ 245 (440)
T 2np9_A 167 EAVHLER-RDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG 245 (440)
T ss_dssp SSEEEEE-ETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred ceEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence 4688888 7999999999995 799999999999999999999999999999994 6 799999999998653
Q ss_pred cCCCccc---ccchHHHHHHHHHH------------HhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccC
Q 009256 74 HGAGDVS---LMPDVSVELVVNLI------------EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL 138 (539)
Q Consensus 74 ~~~~~~~---~~~~~~~~~~~~~i------------~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~ 138 (539)
....... ........++ +.+ .++||||||+|||+|+|||++|+++||+|||+++++|++||+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~l 324 (440)
T 2np9_A 246 GISLVDFLMRRELGYIHKLV-RGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKE 324 (440)
T ss_dssp CCCTTTTHHHHHHTHHHHHH-HCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTT
T ss_pred CcchhhhhhHHHHHHHHHHH-HHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhcc
Confidence 2111000 0001122333 333 47999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccC
Q 009256 139 GVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLG 218 (539)
Q Consensus 139 Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~ 218 (539)
|++|++| +++|+|++|..+|++|++||++|+|+||+++||||+|||++++.+++.+++++++. .++
T Consensus 325 Gl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~~eL~~~a~~~A~~la~---~Av---------- 390 (440)
T 2np9_A 325 GIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDELDAAIERSLTRLDG---DAV---------- 390 (440)
T ss_dssp CCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGTCSEEECHHHHHHHHHHHHHTTCS---HHH----------
T ss_pred CcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecChHHHHHHHHHHHHHhCH---HHH----------
Confidence 9999887 68999999999999999999999999999999999999999999999999887742 211
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhc
Q 009256 219 SLSEAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGY---SGVLKEAKVFKELVMLDTSRGLVHVFFAQRAT 292 (539)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~ 292 (539)
..+|+.++.... +++ +.++.|...+..++.|+|++|++.+|+|||+.
T Consensus 391 --------------------------~~~K~~l~~~~~-~~~~~~~~l~~e~~~~~~~~~s~D~~Egv~AFleKR~a 440 (440)
T 2np9_A 391 --------------------------LANRRMLNLADE-SPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPPA 440 (440)
T ss_dssp --------------------------HHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTCC-----
T ss_pred --------------------------HHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhCCCC
Confidence 134566665543 332 45667778888999999999999999999863
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-47 Score=376.29 Aligned_cols=205 Identities=27% Similarity=0.346 Sum_probs=174.6
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|+++.+.++. +++|++||||||+ .|+||.+|+++|.+++++++.|+++|+|||||.|++||+|+|++++.........
T Consensus 17 ~~~~~v~~~~-~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~ 95 (279)
T 3t3w_A 17 RTEMYIDYDV-SDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTL 95 (279)
T ss_dssp --CCSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCH
T ss_pred ccCCeEEEEE-ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccch
Confidence 4567899999 7999999999996 7999999999999999999999999999999999999999999998654321111
Q ss_pred -ccc---chHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC
Q 009256 80 -SLM---PDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG 155 (539)
Q Consensus 80 -~~~---~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 155 (539)
..+ .....+++ .++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|+ |+++++.+ +|++|
T Consensus 96 ~~~~~~~~~~~~~~~-~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl-~~~~~~~~-~~~vG 172 (279)
T 3t3w_A 96 EFIYAHESRRYLEYS-LRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDI-GGVEYHGH-TWELG 172 (279)
T ss_dssp HHHHHHHHHHTHHHH-HHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTC-SSCSSCCH-HHHHC
T ss_pred HHHHHHHHHHHHHHH-HHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCC-CCchHHHH-HhhcC
Confidence 111 11233455 6799999999999999999999999999999999999999999999999 55555544 99999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 156 LSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
..+|+++++||++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 173 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 226 (279)
T 3t3w_A 173 PRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALR 226 (279)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999886543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=377.07 Aligned_cols=233 Identities=32% Similarity=0.542 Sum_probs=220.6
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 304 ~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
.+++++||+|||+|.||++||..|+++|++|++||++++ +..+.+++.++.++++|.++.++.+..+++++++++++
T Consensus 50 ~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e---~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~ 126 (460)
T 3k6j_A 50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ---RCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH 126 (460)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH---HHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG
T ss_pred CcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH---HHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH
Confidence 457789999999999999999999999999999999998 45556777888899999999988888889999999998
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTER 463 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~ 463 (539)
++++||+||+|+||++++|+.+++++.+++++++||+||||++++++++..+.+|++++|+|||+|++.++++||+++..
T Consensus 127 al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv~~m~LvEIv~g~~ 206 (460)
T 3k6j_A 127 KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPANVIRLVEIIYGSH 206 (460)
T ss_dssp GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSSTTTCCEEEEECCSS
T ss_pred HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchhhhCCEEEEEeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHH-HcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLV-SLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~-~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
|++++++++.++++.+|+.|++++|.+||++||++.++++||+.++ ++|+++++||++++++|+|||||+++|.++
T Consensus 207 Ts~e~~~~~~~l~~~lGk~~v~v~d~pGfi~Nril~~~~~EA~~l~~~~Ga~~e~ID~a~~~~G~pmGPf~l~D~vG 283 (460)
T 3k6j_A 207 TSSQAIATAFQACESIKKLPVLVGNCKSFVFNRLLHVYFDQSQKLMYEYGYLPHQIDKIITNFGFLMGPMTVADMNG 283 (460)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTBSSCHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 559999999999998999999999999753
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=361.24 Aligned_cols=233 Identities=36% Similarity=0.550 Sum_probs=223.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.++||+|||+|+||.+||..|+++|++|++||+++++++.+.+++.+.+.+++++|.++..+.+..++++++++++++++
T Consensus 4 ~~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 83 (483)
T 3mog_A 4 NVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALA 83 (483)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHhc
Confidence 46799999999999999999999999999999999999999999999999999999999988888889999999998899
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSA 466 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~ 466 (539)
+||+||+|+|++.++|+.+++++.+++++++|++||+|+++++.++..+.+|++++|+|||+|++.++++|++++..|++
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~Pa~v~~Lvevv~g~~Ts~ 163 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLATAA 163 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSSTTTCCEEEEEECSSCCH
T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecChhhhCCeEEEecCCCCCH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 467 QVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++.++++.+|+.++++++.+||++||++.++++|++.++++|. ++++||+++ .++|+|||||+++|.++
T Consensus 164 e~~~~~~~l~~~lGk~~v~v~d~~Gfi~Nr~l~~~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p~GP~~l~D~~G 238 (483)
T 3mog_A 164 EVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDAALRDGAGFPMGPLELTDLIG 238 (483)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCTTTTHHHHTHHHHHHHHHHHHTTCSCHHHHHHHHHHTTCCSSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCEEEEEeccCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999975 999999999 58999999999999754
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-43 Score=361.45 Aligned_cols=204 Identities=25% Similarity=0.333 Sum_probs=183.9
Q ss_pred CCcEEEEEecCcEEEEEeCCCC-----------CCCCCHHHHHHHHHHHHHHhcC-CCceEEEEec-CCCCcccCCCchh
Q 009256 3 APRVTMEVGNDGVAIITLINPP-----------VNALAIPIVAGLKDKFEEATSR-DDVKAIVLTG-NGGRFSGGFDINV 69 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p~-----------~Nal~~~~~~~l~~~~~~~~~d-~~v~~vvl~g-~g~~F~aG~Dl~~ 69 (539)
++++.++. +++|++||||||+ .|++|.+|+.+|.+++++++.| +++|+||||| .|++||+|+|+++
T Consensus 20 ~~~v~ve~-~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~e 98 (556)
T 2w3p_A 20 YKHWKLSF-NGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFM 98 (556)
T ss_dssp CSSEEEEE-ETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHH
T ss_pred CceEEEEe-eCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHH
Confidence 45688998 7999999999996 5999999999999999999999 9999999999 8999999999999
Q ss_pred hhhhcCCCcccccchHHHHHHHHHH----HhCCCcEEEEEcCccccchhHhhhccCEEEeeCC--ceEeCCccc-CCCCC
Q 009256 70 FQKVHGAGDVSLMPDVSVELVVNLI----EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK--TQLGLPELT-LGVIP 142 (539)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i----~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~--a~f~~pe~~-~Gl~p 142 (539)
+...... ....+....++++ .+| .++||||||+|||+|+|||++|+++||+|||+++ ++|++||++ +|++|
T Consensus 99 l~~~~~~-~~~~~~~~~~~l~-~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL~P 176 (556)
T 2w3p_A 99 LGLSTHA-WKVNFCKFTNETR-NGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGVLP 176 (556)
T ss_dssp HHHSCHH-HHHHHHHHHHHHH-HHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSSCC
T ss_pred HhhcccH-HHHHHHHHHHHHH-HHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCCCC
Confidence 8653211 1112223344556 668 9999999999999999999999999999999999 999999999 99999
Q ss_pred Ccchhhccc--cccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 143 GFGGTQRLP--RLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 143 ~~g~~~~l~--r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
++|++++|+ |++|..+|++++++|++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 177 g~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p~Av~ 245 (556)
T 2w3p_A 177 GTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSDRPAH 245 (556)
T ss_dssp TTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCCCCTT
T ss_pred CccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCChHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999987764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=355.26 Aligned_cols=263 Identities=33% Similarity=0.511 Sum_probs=229.5
Q ss_pred CCHHHHhHHHHHHhhhhccCCCCC--Cc-CCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 275 MLDTSRGLVHVFFAQRATSKVPNV--TD-IGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 275 ~s~~~~~~~~af~~kr~~~~~~~~--~~-~~~~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
.|++++..++.|+.+|..+|.++. +. .+..++.+++|+|||+|.||.+||..|+++|++|++||++++.++.+.+.+
T Consensus 1 ~~~~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i 80 (463)
T 1zcj_A 1 ASGQAKALQYAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKII 80 (463)
T ss_dssp -CHHHHHHHHHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCccCCCccccccCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 379999999999999998885531 11 223456788999999999999999999999999999999999999988887
Q ss_pred HHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 352 EANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
+..+..+++.|.++..+.+.. ....+++++++++||+||+|+|++.++++.+++++.++++++++|++|||+++++++
T Consensus 81 ~~~l~~~~~~g~~~~~~~~~~--~~~i~~~~~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~l 158 (463)
T 1zcj_A 81 TFTLEKEASRAHQNGQASAKP--KLRFSSSTKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDI 158 (463)
T ss_dssp HHHHHHHHHHHHHTTCCCCCC--CEEEESCGGGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHH--HhhhcCCHHHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHH
Confidence 777766666553322111111 122356667789999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHc
Q 009256 432 GEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSL 511 (539)
Q Consensus 432 ~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~ 511 (539)
+..+.+|++++|+|||+|++.++++|+++++.|++++++.++++++.+|+.++++++.+||++||++.++++|++.++++
T Consensus 159 a~~~~~~~~~ig~hf~~P~~~~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~v~~~~gfi~Nrll~~~~~ea~~l~~~ 238 (463)
T 1zcj_A 159 ASSTDRPQLVIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGVVVGNCYGFVGNRMLAPYYNQGFFLLEE 238 (463)
T ss_dssp HTTSSCGGGEEEEEECSSTTTCCEEEEEECSSCCHHHHHHHHHHHHHTTCEEEEBCCSTTTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCcceEEeecCCCcccceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEECCCccHHHHHHHHHHHHHHHHHHHc
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 512 GVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 512 G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
|+++++||++++++|+|+|||+++|.++
T Consensus 239 G~~~~~id~~~~~~g~p~Gp~~l~D~~G 266 (463)
T 1zcj_A 239 GSKPEDVDGVLEEFGFKMGPFRVSDLAG 266 (463)
T ss_dssp TCCHHHHHHHHHHHTCSSCHHHHHHHHC
T ss_pred CCCHHHHHHHHHHcCCCCcHHHHHHHcc
Confidence 9999999999999999999999999753
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=328.51 Aligned_cols=233 Identities=28% Similarity=0.370 Sum_probs=218.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcC-CCCHHHHHHHhhcccccCCc-cC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRG-KLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.++||+|||+|.||.+||..|+++|++|++||++++.++.+.+.+.+.+..+++.+ .++....+...++++.++++ +.
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 46799999999999999999999999999999999999999999888888888887 77777777777888888888 56
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERT 464 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t 464 (539)
+++||+||+++|++.+.++.+++++.++++++++++|++|++++++++..+.++.+++|+||++|++.++++|++++..|
T Consensus 83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~p~~~~~lvevv~~~~t 162 (283)
T 4e12_A 83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT 162 (283)
T ss_dssp TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECSSTTTSCEEEEEECTTS
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCCCcccCceEEEEeCCCC
Confidence 89999999999999999999999999999999999999999999999888888999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCceeEEE-cCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 465 SAQVILDLMTVGKIIKKVPVVV-GNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 465 ~~e~~~~~~~l~~~lg~~~v~v-~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
++++++.++++++.+|+.++++ ++.|||++||++.++++||+.++++|+ ++++||+++ .++|+|+|||+++|.++
T Consensus 163 ~~~~~~~~~~l~~~~g~~~v~v~~~~~g~i~nr~~~~~~~ea~~l~~~g~~~~~~id~~~~~~~g~~~Gp~~~~D~~G 240 (283)
T 4e12_A 163 DPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVPLLDAAAELLVDGIADPETIDKTWRIGTGAPKGPFEIFDIVG 240 (283)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHCCSSCHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEecCCCCEEehHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCCcCHHHHHHhcc
Confidence 9999999999999999999999 799999999999999999999999975 999999999 68999999999999754
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=317.67 Aligned_cols=237 Identities=34% Similarity=0.515 Sum_probs=215.5
Q ss_pred CCCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHH-----HHHHHhhccc
Q 009256 303 LKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQD-----KANNALKMLK 377 (539)
Q Consensus 303 ~~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~i~ 377 (539)
.|...|+||+|||+|.||.+||..|+++|++|++||+++++++.+.+.+.+.++.+++.|.++.. .......+++
T Consensus 10 ~~~~~~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~ 89 (302)
T 1f0y_A 10 AKKIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA 89 (302)
T ss_dssp --CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceE
Confidence 35556789999999999999999999999999999999999999888888888888888877654 3444456788
Q ss_pred ccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCee
Q 009256 378 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL 456 (539)
Q Consensus 378 ~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~v 456 (539)
.++++ +++++||+||+|+|++.++++.+++++.++++++++|++++|++++++++..+.++++++++||++|++.++++
T Consensus 90 ~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P~~~~~~~ 169 (302)
T 1f0y_A 90 TSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLV 169 (302)
T ss_dssp EESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEE
T ss_pred EecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCCcccCceE
Confidence 88888 48999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcC-CCHHHHHHHH-HhCCCCcchhhc
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLG-VDVFRIDSAI-RSFGLPIGPFQE 534 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G-~~~~~id~a~-~~~g~~~Gpf~~ 534 (539)
|+++++.+++++++.+.++++.+|+.++++++.+||++||++.++++|++.++++| +++++||.++ .++|+|+|||++
T Consensus 170 ~i~~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~~g~i~nr~l~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g~p~GP~~~ 249 (302)
T 1f0y_A 170 EVIKTPMTSQKTFESLVDFSKALGKHPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFEL 249 (302)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHTTCEEEEECSCTTTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCceEEecCcccccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999996 6999999999 789999999999
Q ss_pred cccCC
Q 009256 535 GGCWS 539 (539)
Q Consensus 535 ~d~~~ 539 (539)
+|.++
T Consensus 250 ~D~~G 254 (302)
T 1f0y_A 250 LDYVG 254 (302)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99753
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-39 Score=319.00 Aligned_cols=209 Identities=31% Similarity=0.416 Sum_probs=192.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||++||.+|+ +|++|++||++++.++++.+.+ .+..+++++++++++++++|
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l-----------------~~~~~~~i~~~~~~~~~~~a 74 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQI-----------------PEELLSKIEFTTTLEKVKDC 74 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHS-----------------CGGGGGGEEEESSCTTGGGC
T ss_pred CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHH-----------------HHHHhCCeEEeCCHHHHcCC
Confidence 58999999999999999999 9999999999999988875530 12233567778888669999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHH
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQV 468 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~ 468 (539)
|+||+|+||+.++|+.+++++.+. +++|+++|+|+++++.++..+.+|.+++|+|||+|++.++++|+++++.|++++
T Consensus 75 DlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~~ 152 (293)
T 1zej_A 75 DIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKT 152 (293)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHHH
T ss_pred CEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHHH
Confidence 999999999999999999999877 899999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCCCHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 469 ILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGVDVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 469 ~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
+++++++++.+|+.|++++|. |++||++.++++||+.++++|+++++||+++ .++|+|+ |||+++|.++
T Consensus 153 ~~~~~~l~~~lGk~~v~v~d~--fi~Nrll~~~~~EA~~l~~~Gv~~e~id~~~~~g~g~~~~~~GP~~l~D~~G 225 (293)
T 1zej_A 153 VAFVEGFLRELGKEVVVCKGQ--SLVNRFNAAVLSEASRMIEEGVRAEDVDRVWKHHLGLLYTLFGPLGNLDYIG 225 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEESS--CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCeEEEeccc--ccHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCCCCCCHHHHHHHhc
Confidence 999999999999999999986 9999999999999999999999999999999 6899999 9999999753
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-22 Score=220.38 Aligned_cols=169 Identities=20% Similarity=0.207 Sum_probs=144.4
Q ss_pred cCcEEEEEeCCCC-CCC--CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHH
Q 009256 12 NDGVAIITLINPP-VNA--LAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVE 88 (539)
Q Consensus 12 ~~~v~~i~l~~p~-~Na--l~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (539)
+++|++|++|+|. .|+ ++..+.++|.++|+.++.|+++|+|||++.+ .|+|+.... ...+
T Consensus 300 ~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~~-------------~i~~ 362 (593)
T 3bf0_A 300 GDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTASE-------------VIRA 362 (593)
T ss_dssp SCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHHH-------------HHHH
T ss_pred CCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHHH-------------HHHH
Confidence 5789999999994 677 7899999999999999999999999999874 477775421 1234
Q ss_pred HHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcc------------cCCCCCCc------------
Q 009256 89 LVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL------------TLGVIPGF------------ 144 (539)
Q Consensus 89 ~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~~------------ 144 (539)
.+ +++..++|||||+|+|.|+|||+.|+++||++||++++.|+.+++ ++|+.|+.
T Consensus 363 ~i-~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~ 441 (593)
T 3bf0_A 363 EL-AAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT 441 (593)
T ss_dssp HH-HHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTT
T ss_pred HH-HHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcC
Confidence 55 568889999999999999999999999999999999999999985 68987643
Q ss_pred -chh---------------hccccccCHHH-----HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHH
Q 009256 145 -GGT---------------QRLPRLVGLSK-----AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWAL 198 (539)
Q Consensus 145 -g~~---------------~~l~r~vG~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 198 (539)
+.+ .++++.+|..+ +.+++++|+.++|+||+++||||+|++.+++.+.+.+++.
T Consensus 442 ~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~ 516 (593)
T 3bf0_A 442 RALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK 516 (593)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence 233 56788899888 9999999999999999999999999998888887777543
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=180.32 Aligned_cols=168 Identities=18% Similarity=0.180 Sum_probs=129.9
Q ss_pred cCcEEEEEeCCC-CCCCCCHH-------HHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccc
Q 009256 12 NDGVAIITLINP-PVNALAIP-------IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMP 83 (539)
Q Consensus 12 ~~~v~~i~l~~p-~~Nal~~~-------~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (539)
+++|++|+++.+ ..+.-... .+++|.++|+.+..|+++|+|||++. |.|+|+....
T Consensus 2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~~------------ 65 (240)
T 3rst_A 2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYESA------------ 65 (240)
T ss_dssp CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHHH------------
T ss_pred CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHHH------------
Confidence 578999999887 22210111 35899999999999999999999986 6788876432
Q ss_pred hHHHHHHHHHHHh-CCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCC---------------------cccCCCC
Q 009256 84 DVSVELVVNLIED-CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLP---------------------ELTLGVI 141 (539)
Q Consensus 84 ~~~~~~~~~~i~~-~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~p---------------------e~~~Gl~ 141 (539)
...+.+ +.+.. ++|||||+++|.|.|||++|+++||++||++++.|+.+ +++.|..
T Consensus 66 -~i~~~l-~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~ 143 (240)
T 3rst_A 66 -EIHKKL-EEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAH 143 (240)
T ss_dssp -HHHHHH-HHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTT
T ss_pred -HHHHHH-HHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecccc
Confidence 123445 45777 89999999999999999999999999999999999999 6677777
Q ss_pred CCcchhh--------------------------ccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHH
Q 009256 142 PGFGGTQ--------------------------RLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRL 195 (539)
Q Consensus 142 p~~g~~~--------------------------~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~ 195 (539)
++.+..+ .-.|.+......+ +++|+.+++++|+++||||++.+.+++.+.+.+
T Consensus 144 k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~~ 222 (240)
T 3rst_A 144 ADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKK-IADGRVYDGRQAKKLNLVDELGFYDDTITAMKK 222 (240)
T ss_dssp TTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH-HCSSCEEEHHHHHHTTSSSEECCHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 7665332 1234455554444 789999999999999999999998888777666
Q ss_pred HHH
Q 009256 196 WAL 198 (539)
Q Consensus 196 ~a~ 198 (539)
++.
T Consensus 223 ~~~ 225 (240)
T 3rst_A 223 DHK 225 (240)
T ss_dssp HCG
T ss_pred HhC
Confidence 653
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-20 Score=184.32 Aligned_cols=189 Identities=15% Similarity=0.163 Sum_probs=139.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.|+||+|||+|.||.+||.+|+++||+|++|||++++.+.+.+ .| .+..+++ +.+
T Consensus 2 ~M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~-----------~G-------------a~~a~s~~e~~ 57 (300)
T 3obb_A 2 HMKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------AG-------------ASAARSARDAV 57 (300)
T ss_dssp -CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------TT-------------CEECSSHHHHH
T ss_pred CcCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------cC-------------CEEcCCHHHHH
Confidence 3679999999999999999999999999999999998887633 22 3445555 678
Q ss_pred CCcCEEEEcccCChhHHHHHHHH--HHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCCC--------CC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSE--LEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPAH--------VM 453 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~--l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~~--------~~ 453 (539)
++||+||.|+|++.++...++.. +.+.++++.++++.++..+.. +++..+... |.+|.+.|- .+
T Consensus 58 ~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~----G~~~lDaPVsGg~~~A~~G 133 (300)
T 3obb_A 58 QGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARER----GLAMLDAPVSGGTAGAAAG 133 (300)
T ss_dssp TTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTT----TCEEEECCEESCHHHHHHT
T ss_pred hcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCEEEecCCCCCHHHHHhC
Confidence 99999999999888776666542 677788899888655544332 344433221 455655552 34
Q ss_pred CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCc-ccc---hhhcchH----HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 009256 454 PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-TGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-R 523 (539)
Q Consensus 454 ~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~g~---v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~-~ 523 (539)
.+..++.| +++++++++++++.+|+.++++++. .|. ++|+++. ..+.|++.+++. |++++.+-+++ .
T Consensus 134 ~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~ 210 (300)
T 3obb_A 134 TLTFMVGG---DAEALEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRR 210 (300)
T ss_dssp CEEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred CEEEEEeC---CHHHHHHHHHHHHHhCCCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 56667777 7899999999999999999999863 232 3455543 234599999977 99999999998 4
Q ss_pred hCC
Q 009256 524 SFG 526 (539)
Q Consensus 524 ~~g 526 (539)
+.+
T Consensus 211 ~~~ 213 (300)
T 3obb_A 211 SSG 213 (300)
T ss_dssp STT
T ss_pred Ccc
Confidence 443
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=172.28 Aligned_cols=148 Identities=23% Similarity=0.302 Sum_probs=125.8
Q ss_pred cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHH
Q 009256 12 NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVV 91 (539)
Q Consensus 12 ~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 91 (539)
.+.|++|+++. +++..+.+.|.++|+.++++ ++|+|+|+.. |.|+|+... ..++
T Consensus 7 ~~~V~vI~i~g----~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~----------------~~i~- 60 (230)
T 3viv_A 7 KNIVYVAQIKG----QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM----------------MNIV- 60 (230)
T ss_dssp CCEEEEEEEES----CBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH----------------HHHH-
T ss_pred CCeEEEEEEeC----EECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH----------------HHHH-
Confidence 46899999985 79999999999999999864 6999999875 667766432 2455
Q ss_pred HHHHhCCCcEEEEE---cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhh---------------ccccc
Q 009256 92 NLIEDCKKPIVAAV---EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQ---------------RLPRL 153 (539)
Q Consensus 92 ~~i~~~~~p~iaav---~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~ 153 (539)
+.|..++||||++| +|.|.|+|+.|+++||+++++++++|+.++...+. |..|.+. .+++.
T Consensus 61 ~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~la~~ 139 (230)
T 3viv_A 61 QRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSLAQE 139 (230)
T ss_dssp HHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999 99999999999999999999999999999987532 5555432 36677
Q ss_pred cCH--HHHHHHHHcCCCCCHHHHHHcCCcceecCc
Q 009256 154 VGL--SKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 154 vG~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
.|. .++.+++.+++.++|+||+++||||+|+++
T Consensus 140 ~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~ 174 (230)
T 3viv_A 140 SGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 174 (230)
T ss_dssp TTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred hCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence 885 889999999999999999999999999975
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=172.09 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=130.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.+||+|||+|+||.+|+..|+++|+ +|++||+++++++.+.+.+ .+..+++. +
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~-----------------------gi~~~~~~~~ 59 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC-----------------------GVHTTQDNRQ 59 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT-----------------------CCEEESCHHH
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc-----------------------CCEEeCChHH
Confidence 3589999999999999999999999 9999999999887764310 23344454 6
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRT 461 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~ 461 (539)
.+++||+||+|+| ++....+++++.++ ++++++|+|++++++++.++..+..+.++++.||+.|...+..++ ++++
T Consensus 60 ~~~~aDvVilav~--p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn~p~~v~~g~~~l~~~ 137 (280)
T 3tri_A 60 GALNADVVVLAVK--PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFAN 137 (280)
T ss_dssp HHSSCSEEEECSC--GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECCGGGGGTCEEEEEECC
T ss_pred HHhcCCeEEEEeC--HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecCChHHhcCccEEEEeC
Confidence 7899999999997 56688999999998 888989999999999999998888878999999999998888776 5678
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
+.++++.++.++++++.+|+.+ ++
T Consensus 138 ~~~~~~~~~~v~~l~~~iG~~~-~v 161 (280)
T 3tri_A 138 ETVDKDQKNLAESIMRAVGLVI-WV 161 (280)
T ss_dssp TTSCHHHHHHHHHHHGGGEEEE-EC
T ss_pred CCCCHHHHHHHHHHHHHCCCeE-EE
Confidence 8899999999999999999854 44
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=178.44 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=130.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||||||+|.||.+||.+|+++||+|++|||++++.+.+. +.| ....+++ +.+++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~-----------~~G-------------~~~~~s~~e~~~~ 61 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLT-----------KLG-------------ATVVENAIDAITP 61 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTT-----------TTT-------------CEECSSGGGGCCT
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-----------HcC-------------CeEeCCHHHHHhc
Confidence 4899999999999999999999999999999998876542 222 3344555 77899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeeecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT 461 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~~~ 461 (539)
||+||.|+|++..+...+...+.+.++++.++++.++..|-. +++..+. +.-+++.......+ ..+.+..++.+
T Consensus 62 ~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG 141 (297)
T 4gbj_A 62 GGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSG 141 (297)
T ss_dssp TCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEE
T ss_pred CCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeeccc
Confidence 999999999888777766677888888998887655544432 3333332 22233333222221 12334445555
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcCccc--c---hhhcchH----HHHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTG--F---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g--~---v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
+++.+++++++++.+|+.++++++.+| . ++|+++. ..+.|++.+++. |++++.+-+++ .+.+
T Consensus 142 ---~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~ 214 (297)
T 4gbj_A 142 ---NAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLF 214 (297)
T ss_dssp ---CHHHHHHHHHHHHTTCSEEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTT
T ss_pred ---chhHHHHHHHHHHHhhCCeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcc
Confidence 789999999999999999999986554 2 3355543 345699999977 99999999998 4433
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-18 Score=164.08 Aligned_cols=188 Identities=16% Similarity=0.175 Sum_probs=143.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI----YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||+|.||.+++..|.++|+ +|++||+++++++.+.+.. .+...++. +
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~e 59 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-----------------------GLTTTTDNNE 59 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH-----------------------CCEECSCHHH
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh-----------------------CCEEeCChHH
Confidence 589999999999999999999998 9999999999887764321 23344454 6
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCC-eeeeecCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTE 462 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~-~vei~~~~ 462 (539)
.+++||+||+|+| +...+.+++++.++++++++|+|.+++++...++..+..+.++++.||+.|..... .+.+++++
T Consensus 60 ~~~~aDvVilav~--~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~ 137 (247)
T 3gt0_A 60 VAKNADILILSIK--PDLYASIINEIKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPNTPALVGEGMSALCPNE 137 (247)
T ss_dssp HHHHCSEEEECSC--TTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECCGGGGGTCEEEEEEECT
T ss_pred HHHhCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCChHHHHcCceEEEEeCC
Confidence 6789999999996 55577888889888999999999999999988888777677899999999888776 66777888
Q ss_pred CCcHHHHHHHHHHHHHcCceeEEEcCcc-----cchhh-cchHHHHHHHHHH--HHcCCCHHHHHHHH
Q 009256 463 RTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN-RAFFPYSQSARLL--VSLGVDVFRIDSAI 522 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~~~v~v~~~~-----g~v~n-rl~~~~~~Ea~~l--~~~G~~~~~id~a~ 522 (539)
.++++.++.++++++.+|+ ++++.+.. +.... ..+...+.|++.. .+.|+++++..+++
T Consensus 138 ~~~~~~~~~~~~l~~~~G~-~~~~~e~~~d~~~a~~g~gpa~~~~~~eal~~a~~~~Gl~~~~a~~~~ 204 (247)
T 3gt0_A 138 MVTEKDLEDVLNIFNSFGQ-TEIVSEKLMDVVTSVSGSSPAYVYMIIEAMADAAVLDGMPRNQAYKFA 204 (247)
T ss_dssp TCCHHHHHHHHHHHGGGEE-EEECCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999998 55664321 11110 1122344566554 35599999877776
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=173.55 Aligned_cols=193 Identities=10% Similarity=0.061 Sum_probs=137.8
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
..|+||+|||+|.||.+||..|+++|++|++||+++++++.+.+ . .+...+++ +.
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~~~~~~ 74 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE-----------H-------------GASVCESPAEV 74 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH-----------T-------------TCEECSSHHHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------C-------------CCeEcCCHHHH
Confidence 45679999999999999999999999999999999998777632 1 23445555 66
Q ss_pred CCCcCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCee
Q 009256 385 FKDVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL 456 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~v 456 (539)
+++||+||+|+|++..++..++ +++.+.++++++|++.++..+.. .+...+. ....++..+.+..+ ..++++
T Consensus 75 ~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~ 154 (310)
T 3doj_A 75 IKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLI 154 (310)
T ss_dssp HHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEE
T ss_pred HHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeE
Confidence 7899999999997766665444 56778888999887655543332 2332221 22234442211111 123455
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc------chhhcchH---HHHHHHHHHHHc-CCCHHHHHHHH-HhC
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAFF---PYSQSARLLVSL-GVDVFRIDSAI-RSF 525 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g------~v~nrl~~---~~~~Ea~~l~~~-G~~~~~id~a~-~~~ 525 (539)
.++++ +++.+++++++++.+|+.++++++ +| ++.|.++. ..++|++.+++. |++++++.+++ .+.
T Consensus 155 i~~gg---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~ 230 (310)
T 3doj_A 155 ILAAG---DKALFEESIPAFDVLGKRSFYLGQ-VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGA 230 (310)
T ss_dssp EEEEE---CHHHHHHHHHHHHHHEEEEEECSS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHST
T ss_pred EEEcC---CHHHHHHHHHHHHHhCCCEEEeCC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 56666 689999999999999999999986 44 44455533 456899999977 99999999999 444
Q ss_pred C
Q 009256 526 G 526 (539)
Q Consensus 526 g 526 (539)
+
T Consensus 231 ~ 231 (310)
T 3doj_A 231 M 231 (310)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=168.68 Aligned_cols=184 Identities=19% Similarity=0.172 Sum_probs=134.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||..|+++||+|++||+++++++.+.+ ..+..++++ +.++
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~------------------------~g~~~~~~~~~~~~- 70 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAE------------------------AGATLADSVADVAA- 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHH------------------------TTCEECSSHHHHTT-
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH------------------------CCCEEcCCHHHHHh-
Confidence 48999999999999999999999999999999998776633 124455666 5567
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeeecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT 461 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~~~ 461 (539)
||+||+|+|++..++ .+++++.+.++++++|++.++..+.. .+...+. ...+++..+.+.++ ..+.+..++.+
T Consensus 71 aDvvi~~vp~~~~~~-~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg 149 (296)
T 3qha_A 71 ADLIHITVLDDAQVR-EVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGA 149 (296)
T ss_dssp SSEEEECCSSHHHHH-HHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEEC
T ss_pred CCEEEEECCChHHHH-HHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecC
Confidence 999999999766554 45588888999999888666544432 3333332 22234443322222 22355666666
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcCccc------chhhcchH---HHHHHHHHHHHc-CCCHHHH------HHHH
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAFF---PYSQSARLLVSL-GVDVFRI------DSAI 522 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g------~v~nrl~~---~~~~Ea~~l~~~-G~~~~~i------d~a~ 522 (539)
+++.+++++++++.+|+.++++++ +| ++.|.++. ..++|++.+++. |++++++ .+++
T Consensus 150 ---~~~~~~~~~~ll~~~g~~~~~~g~-~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i 222 (296)
T 3qha_A 150 ---DREVYERIKPAFKHWAAVVIHAGE-PGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDAL 222 (296)
T ss_dssp ---CHHHHHHHHHHHHHHEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHcCCeEEcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHH
Confidence 789999999999999999999976 34 34455543 457899999977 9999999 8887
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-18 Score=173.87 Aligned_cols=193 Identities=17% Similarity=0.228 Sum_probs=149.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||.++|..|+.+|+ +|++||+++++++.....+..... ... ...++..+++++++++
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~-~~~-----------~~~~i~~t~d~~a~~~ 72 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMV-MFG-----------STSKVIGTDDYADISG 72 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHH-HHT-----------CCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhh-hcC-----------CCcEEEECCCHHHhCC
Confidence 489999999999999999999999 999999999887764222211110 000 0134566677788999
Q ss_pred cCEEEEcc--------------cCChhHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhhccCC-CCcEEEeccCCCC
Q 009256 388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTSS-QDRIIGAHFFSPA 450 (539)
Q Consensus 388 aDlVi~av--------------pe~~~~~~~~~~~l~~~~~~~~ii--~s~ts~~~~~~i~~~~~~-~~r~vg~h~~~p~ 450 (539)
||+||+++ +++..+++.+++++.++++ ++++ ++|++.+....+++.... |+|++|+
T Consensus 73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~------ 145 (317)
T 2ewd_A 73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCP-NAFVICITNPLDVMVSHFQKVSGLPHNKVCGM------ 145 (317)
T ss_dssp CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECCSSHHHHHHHHHHHHCCCGGGEEES------
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeCChHHHHHHHHHHhhCCCHHHEEec------
Confidence 99999999 7788899999999999975 7766 455555544555555554 6788764
Q ss_pred CCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhc---chHHHHHHH-------HHHHHcCC-CHHHHH
Q 009256 451 HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNR---AFFPYSQSA-------RLLVSLGV-DVFRID 519 (539)
Q Consensus 451 ~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nr---l~~~~~~Ea-------~~l~~~G~-~~~~id 519 (539)
.|+.++......+.+.+|+. .++.+||++|+ .++++++++ ..++++|+ +++++|
T Consensus 146 ------------~t~ld~~r~~~~la~~lg~~---~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id 210 (317)
T 2ewd_A 146 ------------AGVLDSSRFRTFIAQHFGVN---ASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQGLITQEQID 210 (317)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTSC---GGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTTSSCHHHHH
T ss_pred ------------cCcHHHHHHHHHHHHHhCcC---hhhceEEEEecCCCceeEEeeccccCCEEHHHHHhccCCCHHHHH
Confidence 36788888888899999987 48999999999 888999998 88889985 999999
Q ss_pred HHHHhCCCCcchhhcccc
Q 009256 520 SAIRSFGLPIGPFQEGGC 537 (539)
Q Consensus 520 ~a~~~~g~~~Gpf~~~d~ 537 (539)
++++.. ++|||++.|.
T Consensus 211 ~~~~~~--~~~~~ei~~~ 226 (317)
T 2ewd_A 211 EIVCHT--RIAWKEVADN 226 (317)
T ss_dssp HHHHHH--HHHHHHHHHH
T ss_pred HHHHHH--HhhHHHHHHh
Confidence 998432 7899999873
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=163.38 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=135.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
.+||+|||+|.||.+||..|+++|++|++||+++++++.+.+ .| ....++++ +.++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g------------~~~~~~~~~e~~~ 63 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLA-----------EG------------ACGAAASAREFAG 63 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT------------CSEEESSSTTTTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-----------cC------------CccccCCHHHHHh
Confidence 358999999999999999999999999999999998877633 12 11214455 6789
Q ss_pred CcCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccC-CCC---CCCCeee
Q 009256 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFF-SPA---HVMPLLE 457 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~-~p~---~~~~~ve 457 (539)
+||+||+|+|++..++..++ +++.+.++++++|++.++..+.. .+...+. ....++. +|. ..+ ..+.+..
T Consensus 64 ~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~ 142 (303)
T 3g0o_A 64 VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVKAAQGEMTV 142 (303)
T ss_dssp TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHHHHTTCEEE
T ss_pred cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhhhhcCCeEE
Confidence 99999999997766655444 56778888999887655543322 3333332 2234554 332 222 1234455
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc------chhhcch---HHHHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g------~v~nrl~---~~~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
++++ +++.+++++++++.+|+.++++++.+| ++.|.+. .+.++|++.+++. |++++++.+++ .+.+
T Consensus 143 ~~gg---~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~ 219 (303)
T 3g0o_A 143 MASG---SEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAG 219 (303)
T ss_dssp EEEC---CHHHHHHHHHHHHHHEEEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT
T ss_pred EeCC---CHHHHHHHHHHHHHHCCCEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 6665 789999999999999999999986444 2334432 3457899999977 99999999999 4433
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-18 Score=167.48 Aligned_cols=191 Identities=13% Similarity=0.051 Sum_probs=135.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.++|..|+++|++|++||+++++.+.+.+ ..+..++++ +.+++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~------------------------~g~~~~~~~~~~~~~ 57 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAA------------------------LGAERAATPCEVVES 57 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHH------------------------TTCEECSSHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH------------------------CCCeecCCHHHHHhc
Confidence 48999999999999999999999999999999998777633 124445566 66789
Q ss_pred cCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
||+||+|+|++..++..++ +++.+.++++++|++.++..+.. .+...+. ....++..+.+.++ ..+.++.++
T Consensus 58 aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~ 137 (287)
T 3pef_A 58 CPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILA 137 (287)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEE
Confidence 9999999997666665554 67888999999887665443322 2322222 22345442222222 123445566
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcC-cccc---hhhcchH----HHHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~---v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
.+ +++.+++++++++.+|+.++++++ ..+. ++|+++. ..++|++.+++. |++++++.+++ .+.+
T Consensus 138 gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~ 211 (287)
T 3pef_A 138 AG---DRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAM 211 (287)
T ss_dssp EE---CHHHHHHHHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTT
T ss_pred eC---CHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 65 789999999999999999999976 2222 2344433 467899999977 99999999999 4443
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-16 Score=160.88 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=124.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.++||+|||+|.||.++|..|.++|+ +|++||++++.++.+.+ .|..+ ..++++ +
T Consensus 32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~-----------~G~~~-----------~~~~~~~~ 89 (314)
T 3ggo_A 32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAK 89 (314)
T ss_dssp SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCTTG
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-----------CCCcc-----------hhcCCHHH
Confidence 45799999999999999999999999 99999999988776532 22211 224455 5
Q ss_pred -CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCC---------
Q 009256 384 -EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH--------- 451 (539)
Q Consensus 384 -~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~--------- 451 (539)
.+++||+||+|+|.+. ...+++++.++++++++|++.+|... ...+...++ .++++.||+.++.
T Consensus 90 ~~~~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~--~~~v~~hPm~G~e~sG~~~A~~ 165 (314)
T 3ggo_A 90 VEDFSPDFVMLSSPVRT--FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHPIAGTEKSGVEYSLD 165 (314)
T ss_dssp GGGGCCSEEEECSCGGG--HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEECCCCCCCSGGGCCT
T ss_pred HhhccCCEEEEeCCHHH--HHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcC--CCEEecCcccCCcccchhhhhh
Confidence 6899999999999654 56788999999999999988776543 345555443 3899999988653
Q ss_pred ---CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 452 ---VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 452 ---~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+..+.+++++.++++.+++++++++.+|+.++++++
T Consensus 166 ~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~v~~~~~ 205 (314)
T 3ggo_A 166 NLYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP 205 (314)
T ss_dssp TTTTTCEEEECCCTTSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred hhhcCCEEEEEeCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 3567888898889999999999999999999998853
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-18 Score=169.28 Aligned_cols=188 Identities=13% Similarity=0.070 Sum_probs=128.9
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC--hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
..++||+|||+|.||.+||..|+++|+ +|++||++ +++.+.+.+ . .+...++.
T Consensus 22 ~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~-----------~-------------g~~~~~~~ 77 (312)
T 3qsg_A 22 SNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEE-----------L-------------GVSCKASV 77 (312)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH-----------T-------------TCEECSCH
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH-----------C-------------CCEEeCCH
Confidence 346799999999999999999999999 99999997 455554321 1 23344555
Q ss_pred -cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCC---CCcEEEeccCCCC--CCCC
Q 009256 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS---QDRIIGAHFFSPA--HVMP 454 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~---~~r~vg~h~~~p~--~~~~ 454 (539)
+.+++||+||+|+|++... .++.++.+.++++++|+++++..+.. .+...+.. ..+++....+.++ ..+.
T Consensus 78 ~e~~~~aDvVi~~vp~~~~~--~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~~g~ 155 (312)
T 3qsg_A 78 AEVAGECDVIFSLVTAQAAL--EVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHR 155 (312)
T ss_dssp HHHHHHCSEEEECSCTTTHH--HHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTTGGG
T ss_pred HHHHhcCCEEEEecCchhHH--HHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhhcCC
Confidence 6678999999999987755 46788999999999988766654433 22222211 2234443222221 2236
Q ss_pred eeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccc-----hhhcchH----HHHHHHHHHHHc-CCCHHHHHHHH-H
Q 009256 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAI-R 523 (539)
Q Consensus 455 ~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~-----v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~-~ 523 (539)
+..+++++.+ +.++++++.+|+.++++++.+|. ++|+++. ..++|++.+++. |++++ +-+.+ .
T Consensus 156 l~i~vgg~~~-----~~~~~ll~~~g~~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~-~~~~l~~ 229 (312)
T 3qsg_A 156 VPLVVDGDGA-----RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADR-VLASLDA 229 (312)
T ss_dssp SEEEEESTTH-----HHHHHHHHTTTCEEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH-HHHHHHH
T ss_pred EEEEecCChH-----HHHHHHHHHhCCCeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHh
Confidence 6677777532 88999999999999999875552 3344433 667899999988 99985 44556 4
Q ss_pred hC
Q 009256 524 SF 525 (539)
Q Consensus 524 ~~ 525 (539)
+.
T Consensus 230 ~~ 231 (312)
T 3qsg_A 230 SF 231 (312)
T ss_dssp HS
T ss_pred cC
Confidence 44
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=166.20 Aligned_cols=191 Identities=14% Similarity=0.121 Sum_probs=134.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++||+|||+|.||.+||..|+++|++|++||+++++++.+.+ . .+..++++ +.++
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~~~~e~~~ 86 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA-----------L-------------GATIHEQARAAAR 86 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------T-------------TCEEESSHHHHHT
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH-----------C-------------CCEeeCCHHHHHh
Confidence 468999999999999999999999999999999998776532 1 23445566 6688
Q ss_pred CcCEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeee
Q 009256 387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
+||+||+|+|++..++..+.. ++.+.++++++|++.+++.+.. .+...+. ...+++..+.+.++ ..+++..++
T Consensus 87 ~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~ 166 (320)
T 4dll_A 87 DADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMA 166 (320)
T ss_dssp TCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEE
T ss_pred cCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEe
Confidence 999999999976665544432 6777888888887666544432 2333222 22234443222211 223455666
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcC-ccc----chhhcch---HHHHHHHHHHHHc-CCCHHHHHHHH-HhCC
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSFG 526 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g----~v~nrl~---~~~~~Ea~~l~~~-G~~~~~id~a~-~~~g 526 (539)
.+ +++++++++++++.+ +.++++++ ..| ++.|.++ .+.++|++.+++. |++++++.+++ .+.+
T Consensus 167 gg---~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~ 239 (320)
T 4dll_A 167 GG---KPADFERSLPLLKVF-GRATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFA 239 (320)
T ss_dssp ES---CHHHHHHHHHHHHHH-EEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTT
T ss_pred CC---CHHHHHHHHHHHHhc-CCEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccc
Confidence 66 789999999999999 88999976 223 2334433 2457899999977 99999999999 4443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=164.15 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=134.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|+||+|||+|.||.+||..|+++||+|++||+++++.+.+.+. .+..+++. +.++
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~------------------------g~~~~~~~~~~~~ 56 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL------------------------GARQASSPAEVCA 56 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH------------------------TCEECSCHHHHHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC------------------------CCeecCCHHHHHH
Confidence 4689999999999999999999999999999999987776431 23445555 6678
Q ss_pred CcCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCCC---CCCeeee
Q 009256 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI 458 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~~---~~~~vei 458 (539)
+||+||+|+|++..++..++ +++.+.+++++++++.++..+.. .+...+. ...+++..+.+.++. .+.+..+
T Consensus 57 ~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~ 136 (287)
T 3pdu_A 57 ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIIL 136 (287)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEE
T ss_pred cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEE
Confidence 99999999997766655544 56778888888887655543332 2333222 222344432222221 1234445
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeEEEcC-ccc----chhhcch---HHHHHHHHHHHHc-CCCHHHHHHHH-HhC
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI-RSF 525 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g----~v~nrl~---~~~~~Ea~~l~~~-G~~~~~id~a~-~~~ 525 (539)
+.+ +++.+++++++++.+|+.++++++ ..| ++.|.++ ...++|++.+++. |++++++.+++ .+.
T Consensus 137 ~gg---~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~ 210 (287)
T 3pdu_A 137 AAG---DQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGA 210 (287)
T ss_dssp EEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHST
T ss_pred EeC---CHHHHHHHHHHHHHhCCCEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence 555 789999999999999999999976 222 2335443 3456799999977 99999999999 444
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-17 Score=158.68 Aligned_cols=199 Identities=10% Similarity=0.023 Sum_probs=142.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..|++.|++ |.+||+++++++.+.+.+ .+...+++ +.++
T Consensus 11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~ 67 (266)
T 3d1l_A 11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-----------------------EAEYTTDLAEVNP 67 (266)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-----------------------TCEEESCGGGSCS
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-----------------------CCceeCCHHHHhc
Confidence 4799999999999999999999999 999999998877653321 13334555 6678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC-----CCCCeeeeecC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA-----HVMPLLEIVRT 461 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~-----~~~~~vei~~~ 461 (539)
+||+||+|+|++. ...+++++.+.++++++|++++++.+.+.++..+..+ -..|++.|. ...+.+.++-
T Consensus 68 ~~Dvvi~av~~~~--~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~v- 141 (266)
T 3d1l_A 68 YAKLYIVSLKDSA--FAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHY---GVFYPMQTFSKQREVDFKEIPFFI- 141 (266)
T ss_dssp CCSEEEECCCHHH--HHHHHHHHHTTCCTTCEEEECCTTSCGGGSTTTCSSE---EEEEECCCC---CCCCCTTCCEEE-
T ss_pred CCCEEEEecCHHH--HHHHHHHHHhhcCCCcEEEECCCCCchHHHHHHHHhc---cCcCCceecCCCchhhcCCCeEEE-
Confidence 9999999999663 4788888988888999999999998887766555432 124555531 1112222221
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcCc--ccc-----hhhcch--HHHHHHHHHHHHcCCCHHHHHHHH-Hh------C
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--TGF-----AVNRAF--FPYSQSARLLVSLGVDVFRIDSAI-RS------F 525 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~~--~g~-----v~nrl~--~~~~~Ea~~l~~~G~~~~~id~a~-~~------~ 525 (539)
..++++.++.++++++.+|+.++++++. +++ ++|++. ...+.|++. .+.|++++++..++ .. .
T Consensus 142 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~eal~-~~~Gl~~~~~~~l~~~~~~~~~~~ 220 (266)
T 3d1l_A 142 EASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELL-KKYNLPFDVMLPLIDETARKVHEL 220 (266)
T ss_dssp EESSHHHHHHHHHHHHTTCSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCGGGGHHHHHHHHHHHHHS
T ss_pred ecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhc
Confidence 2358899999999999999999999754 356 667775 344456632 35699888875554 11 2
Q ss_pred ---CCCcchhhcccc
Q 009256 526 ---GLPIGPFQEGGC 537 (539)
Q Consensus 526 ---g~~~Gpf~~~d~ 537 (539)
+.++||++..|.
T Consensus 221 ~~~~~~~GP~~r~d~ 235 (266)
T 3d1l_A 221 EPKTAQTGPAIRYDE 235 (266)
T ss_dssp CHHHHCCSTTTTTCH
T ss_pred ChhhhCCCCCccCCH
Confidence 347899988874
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-16 Score=154.87 Aligned_cols=186 Identities=10% Similarity=0.027 Sum_probs=131.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++||+|||+|.||.+||..|+++|++|++||+++++++.+.+. .+...+++ +.++
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~------------------------g~~~~~~~~e~~~ 64 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA------------------------GAHLCESVKAALS 64 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH------------------------TCEECSSHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC------------------------CCeecCCHHHHHh
Confidence 4689999999999999999999999999999999988776331 12334455 6678
Q ss_pred CcCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC-CC--CCeeee
Q 009256 387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA-HV--MPLLEI 458 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~-~~--~~~vei 458 (539)
+||+||+|+|++..++..+ . .+... .++++|++.++..+.. .+...+. ...+|+..+.+.++ .. ..++.+
T Consensus 65 ~aDvVi~~vp~~~~~~~v~-~~~~l~~~-~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~ 142 (306)
T 3l6d_A 65 ASPATIFVLLDNHATHEVL-GMPGVARA-LAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSI 142 (306)
T ss_dssp HSSEEEECCSSHHHHHHHH-TSTTHHHH-TTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEE
T ss_pred cCCEEEEEeCCHHHHHHHh-cccchhhc-cCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEE
Confidence 9999999999766655444 4 46554 5777777655544432 3333222 23356655333322 11 134445
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeEEE--cC--cccchhhcch---HHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPVVV--GN--CTGFAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v~v--~~--~~g~v~nrl~---~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
+++ +++.+++++++++.+|..++++ ++ ..|.+.|.++ ...++|++.+++. |++++++.+++
T Consensus 143 ~gg---~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~~~k~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~ 211 (306)
T 3l6d_A 143 HTG---DREAFEQHRALLEGLAGHTVFLPWDEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTARLL 211 (306)
T ss_dssp EEE---CHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EcC---CHHHHHHHHHHHHHhcCCEEEecCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 555 7899999999999998899999 75 5567777332 2456799999977 99999999888
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=148.93 Aligned_cols=188 Identities=13% Similarity=0.040 Sum_probs=134.6
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
|++|+|||+ |.||.+++..|+++|++|++||+++++++.+.+ .| +..++..+.++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~~~~~~~~ 66 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-----------MG-------------IPLTDGDGWID 66 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-----------TT-------------CCCCCSSGGGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-----------cC-------------CCcCCHHHHhc
Confidence 569999999 999999999999999999999999988766532 11 22222336788
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCC--------CCCe---
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH--------VMPL--- 455 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~--------~~~~--- 455 (539)
+||+||+|+|++. ...+++++.+.++++++|++.+++.+...+.. .....++++.||+.|+. ....
T Consensus 67 ~aDvVi~av~~~~--~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~-~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~ 143 (286)
T 3c24_A 67 EADVVVLALPDNI--IEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP-ERADITYFIGHPCHPPLFNDETDPAARTDYHG 143 (286)
T ss_dssp TCSEEEECSCHHH--HHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC-CCTTSEEEEEEECCSCSSCCCCSHHHHTCSSS
T ss_pred CCCEEEEcCCchH--HHHHHHHHHHhCCCCCEEEECCCCchhHHHHh-hhCCCeEEecCCCCccccccccchhhccCccc
Confidence 9999999999554 67888899988999999998777776666554 33335799899988765 2222
Q ss_pred -----eeeecCCCCcHHHHHHHHHHHHHcCc---eeEEEcCc-ccc----hhhcchHHH---HHHHHHHH-Hc-CCCHHH
Q 009256 456 -----LEIVRTERTSAQVILDLMTVGKIIKK---VPVVVGNC-TGF----AVNRAFFPY---SQSARLLV-SL-GVDVFR 517 (539)
Q Consensus 456 -----vei~~~~~t~~e~~~~~~~l~~~lg~---~~v~v~~~-~g~----v~nrl~~~~---~~Ea~~l~-~~-G~~~~~ 517 (539)
..++.+..++++.++.++++++.+|. .++++++. .+. +.|-...++ +.|++... .. |+++++
T Consensus 144 ~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~ 223 (286)
T 3c24_A 144 GIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQA 223 (286)
T ss_dssp SSSCEEEEEEEEESCTHHHHHHHHHHHHHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred ccccceeeeeccCCCHHHHHHHHHHHHHhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 22333334688999999999999999 88888642 222 234343333 33655443 44 999888
Q ss_pred HHHHH
Q 009256 518 IDSAI 522 (539)
Q Consensus 518 id~a~ 522 (539)
+-+.+
T Consensus 224 ~~~~~ 228 (286)
T 3c24_A 224 ALDFM 228 (286)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-15 Score=152.32 Aligned_cols=188 Identities=13% Similarity=0.058 Sum_probs=135.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC----CeEEEEeCChH--HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSE--YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
++||+|||+|.||.+||..|+++| ++|++||++++ +++.+.+ . .+..+++
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~-----------~-------------G~~~~~~ 77 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRK-----------M-------------GVKLTPH 77 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHH-----------H-------------TCEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHH-----------c-------------CCEEeCC
Confidence 358999999999999999999999 89999999986 6555421 1 1333444
Q ss_pred c-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCC---CCcEEEeccCCCCCCCCeee
Q 009256 382 Y-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSS---QDRIIGAHFFSPAHVMPLLE 457 (539)
Q Consensus 382 ~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~---~~r~vg~h~~~p~~~~~~ve 457 (539)
. +.+++||+||+|+| +.....++.++.+.++++++|++.+++++...+...+.. ..++++.++..|........
T Consensus 78 ~~e~~~~aDvVilav~--~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~~ 155 (322)
T 2izz_A 78 NKETVQHSDVLFLAVK--PHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGAT 155 (322)
T ss_dssp HHHHHHHCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEEE
T ss_pred hHHHhccCCEEEEEeC--HHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCeE
Confidence 4 66789999999998 455778888999889889999998888888766655432 35788999988776655444
Q ss_pred ee-cCCCCcHHHHHHHHHHHHHcCceeEEEcCcc----cc--hhhcchHHHHHHHHH--HHHcCCCHHHHHHHH
Q 009256 458 IV-RTERTSAQVILDLMTVGKIIKKVPVVVGNCT----GF--AVNRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (539)
Q Consensus 458 i~-~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~----g~--v~nrl~~~~~~Ea~~--l~~~G~~~~~id~a~ 522 (539)
++ +++.++++.++.++++++.+|..+++..+.- +. ..|.+++ .+.|++. ..+.|+++++..+++
T Consensus 156 v~~~g~~~~~~~~~~v~~ll~~~G~~~~~~e~~~~~~~a~~g~gpa~~~-~~~eala~a~~~~Gl~~~~a~~l~ 228 (322)
T 2izz_A 156 VYATGTHAQVEDGRLMEQLLSSVGFCTEVEEDLIDAVTGLSGSGPAYAF-TALDALADGGVKMGLPRRLAVRLG 228 (322)
T ss_dssp EEEECTTCCHHHHHHHHHHHHTTEEEEECCGGGHHHHHHHTTTHHHHHH-HHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCEEEeCHHHHHHHHHHhcCHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 6777789999999999999998665432211 11 1133333 3344443 235599888766655
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-16 Score=146.09 Aligned_cols=157 Identities=8% Similarity=0.009 Sum_probs=122.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
.+||+|||+|+||++||..|.++|++|++||+. +.+.+
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------------------------------~~~~~ 43 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------------------------------EDIRD 43 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------------------------------GGGGG
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------------------------------HHhcc
Confidence 458999999999999999999999999999983 11457
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHH
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQ 467 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e 467 (539)
|| |+|+|++ ....+++++.++++++++|++++.+.....+........+|++.||+.... .-+..+ +++
T Consensus 44 aD--ilavP~~--ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~~----~~i~a~---d~~ 112 (232)
T 3dfu_A 44 FE--LVVIDAH--GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQDR----WVASAL---DEL 112 (232)
T ss_dssp CS--EEEECSS--CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETTE----EEEEES---SHH
T ss_pred CC--EEEEcHH--HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCCc----eeeeCC---CHH
Confidence 88 8899976 356788899999999999987665555554444444566899999864321 113333 788
Q ss_pred HHHHHHHHHHHcCceeEEEc--Ccccc----hhhcchHHHHHHHHHHH---HcCC-CHHH
Q 009256 468 VILDLMTVGKIIKKVPVVVG--NCTGF----AVNRAFFPYSQSARLLV---SLGV-DVFR 517 (539)
Q Consensus 468 ~~~~~~~l~~~lg~~~v~v~--~~~g~----v~nrl~~~~~~Ea~~l~---~~G~-~~~~ 517 (539)
.++.++++++.+|.++++++ +.++| ..++.+.++.++|..++ ++|+ +++|
T Consensus 113 a~~~l~~L~~~lG~~vv~~~~~~hd~~~AAvsh~nhLv~L~~~A~~ll~~~~~g~a~~~d 172 (232)
T 3dfu_A 113 GETIVGLLVGELGGSIVEIADDKRAQLAAALTYAGFLSTLQRDASYFLDEFLGDPDVTSD 172 (232)
T ss_dssp HHHHHHHHHHHTTCEECCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEeCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhh
Confidence 99999999999999999985 45565 44777888999999998 8887 8887
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-16 Score=163.25 Aligned_cols=205 Identities=17% Similarity=0.154 Sum_probs=136.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC-CC-eEEEEeCChH----HHHHHHHHH------HHHHHhhHhcCCCCHHHHHHHhh
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSE----YLLKGIKTI------EANVRGLVTRGKLTQDKANNALK 374 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~----~~~~~~~~i------~~~~~~~~~~~~~~~~~~~~~~~ 374 (539)
+++||+|||+|.||.++|.+|+++ || +|++||++++ +++.+.+.. +..+..++++. ...+
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~--------~~~g 88 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKV--------VKAG 88 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHH--------HHTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhh--------cccC
Confidence 457999999999999999999999 99 9999999999 877764310 01111111100 0125
Q ss_pred cccccCCccCCCCcCEEEEcccCCh----------hHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhh-----ccC
Q 009256 375 MLKGVLDYSEFKDVDMVIEAVIESV----------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGE-----KTS 436 (539)
Q Consensus 375 ~i~~~~~~~~~~~aDlVi~avpe~~----------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~-----~~~ 436 (539)
++.++++.+++++||+||+|||++. .......+.+.++++++++|+.. |++++. .+.. ...
T Consensus 89 ~l~~ttd~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~-STv~pgtt~~v~~~ile~~~g 167 (478)
T 3g79_A 89 KFECTPDFSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLE-STITPGTTEGMAKQILEEESG 167 (478)
T ss_dssp CEEEESCGGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEEC-SCCCTTTTTTHHHHHHHHHHC
T ss_pred CeEEeCcHHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEe-CCCChHHHHHHHHHHHHHhcC
Confidence 6788888888999999999998763 23455667899999999988744 455543 2221 111
Q ss_pred C--CCcE-EEeccCCCCCCCC--e-------eeeecCCCCcHHHHHHHHHHHHHc-CceeEEEcCcc-----cchhhcch
Q 009256 437 S--QDRI-IGAHFFSPAHVMP--L-------LEIVRTERTSAQVILDLMTVGKII-KKVPVVVGNCT-----GFAVNRAF 498 (539)
Q Consensus 437 ~--~~r~-vg~h~~~p~~~~~--~-------vei~~~~~t~~e~~~~~~~l~~~l-g~~~v~v~~~~-----g~v~nrl~ 498 (539)
. ...+ +. ++|....+ . ..|+.| .+++..+.++++++.+ ++.++++++.. .++.|-++
T Consensus 168 ~~~~~d~~v~---~~Pe~~~~G~a~~~~~~~~~Iv~G--~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~ 242 (478)
T 3g79_A 168 LKAGEDFALA---HAPERVMVGRLLKNIREHDRIVGG--IDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFR 242 (478)
T ss_dssp CCBTTTBEEE---ECCCCCCTTSHHHHHHHSCEEEEE--SSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHH
T ss_pred CCcCCceeEE---eCCccCCccchhhhhcCCcEEEEe--CCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHH
Confidence 1 0111 11 12221111 1 023333 2788889999999999 88888886522 23445443
Q ss_pred ---HHHHHHHHHHHHc-CCCHHHHHHHH-HhC
Q 009256 499 ---FPYSQSARLLVSL-GVDVFRIDSAI-RSF 525 (539)
Q Consensus 499 ---~~~~~Ea~~l~~~-G~~~~~id~a~-~~~ 525 (539)
.+++||+..+++. |+++.++-+++ ...
T Consensus 243 a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~ 274 (478)
T 3g79_A 243 DLQIAAINQLALYCEAMGINVYDVRTGVDSLK 274 (478)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCc
Confidence 3778999999987 99999999998 444
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-15 Score=146.95 Aligned_cols=190 Identities=13% Similarity=0.059 Sum_probs=128.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChH---HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSE---YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY 382 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~ 382 (539)
++||+|||+|.||.++|..|+++| ++|++||++++ +.+...+. ..+.| + .. +..
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~-------~~~~g-------------~-~~~s~~ 82 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRAR-------AAELG-------------V-EPLDDV 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHH-------HHHTT-------------C-EEESSG
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHH-------HHHCC-------------C-CCCCHH
Confidence 468999999999999999999999 99999999983 22222111 11112 2 22 233
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC--CCCCeee
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA--HVMPLLE 457 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~--~~~~~ve 457 (539)
+.+++||+||+|+|++... ..+.++.+.++++++|++.++..+.. .+...+. ...+++....+.|+ ..+.+..
T Consensus 83 e~~~~aDvVi~avp~~~~~--~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~a~~g~l~i 160 (317)
T 4ezb_A 83 AGIACADVVLSLVVGAATK--AVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPI 160 (317)
T ss_dssp GGGGGCSEEEECCCGGGHH--HHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCSTTTGGGSEE
T ss_pred HHHhcCCEEEEecCCHHHH--HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCchhhcCCEEE
Confidence 7789999999999977654 34588889999999888766443332 3333332 22345554333332 2445666
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc------chhhcc---hHHHHHHHHHHHHc-CCCHHHHHHHHHhC
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG------FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAIRSF 525 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g------~v~nrl---~~~~~~Ea~~l~~~-G~~~~~id~a~~~~ 525 (539)
+++++. + ++++++++.+|+.++++++.+| ++.|-+ ..+.++|++.+++. |++++.++.+..+.
T Consensus 161 ~vgg~~---~--~~~~~ll~~~g~~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~ 233 (317)
T 4ezb_A 161 LVAGRR---A--VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETF 233 (317)
T ss_dssp EEESTT---H--HHHHHHHHTTTCEEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred EEeCCh---H--HHHHHHHHHhCCCeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 777743 2 8899999999999999987555 233433 34667899999977 99996555554443
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=161.77 Aligned_cols=202 Identities=12% Similarity=0.088 Sum_probs=140.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH----HHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE----ANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||+|.||.++|..|+++|++|++||+++++++.+.+... ..+...+. .....+++.+++++ +
T Consensus 9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~--------~~~~~~~l~~ttd~~~ 80 (478)
T 2y0c_A 9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIA--------RNRSAGRLRFSTDIEA 80 (478)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHH--------HHHHTTCEEEECCHHH
T ss_pred ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHH--------HhcccCCEEEECCHHH
Confidence 48999999999999999999999999999999999888754210 00000000 00012457788888 6
Q ss_pred CCCCcCEEEEcccC--------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH---HhhccC----CC---CcEEEec
Q 009256 384 EFKDVDMVIEAVIE--------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKTS----SQ---DRIIGAH 445 (539)
Q Consensus 384 ~~~~aDlVi~avpe--------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~---i~~~~~----~~---~r~vg~h 445 (539)
++++||+||+|||+ |....+.+++++.++++++++|+.. |++++.. +...+. .+ ..+ ..
T Consensus 81 a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~-STv~~gt~~~l~~~l~~~~~~g~~~~~~--~v 157 (478)
T 2y0c_A 81 AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDK-STVPVGTAERVRAAVAEELAKRGGDQMF--SV 157 (478)
T ss_dssp HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEEC-SCCCTTHHHHHHHHHHHHHHHTTCCCCE--EE
T ss_pred HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEe-CCcCCCchHHHHHHHHHHhcCCCCCccE--EE
Confidence 78999999999997 4478888999999999999988654 4665532 221111 11 122 12
Q ss_pred cCCCCCCCCee---------eeecCCCCcH----HHHHHHHHHHHHcCc--eeEEEcC-----cccchhhcch---HHHH
Q 009256 446 FFSPAHVMPLL---------EIVRTERTSA----QVILDLMTVGKIIKK--VPVVVGN-----CTGFAVNRAF---FPYS 502 (539)
Q Consensus 446 ~~~p~~~~~~v---------ei~~~~~t~~----e~~~~~~~l~~~lg~--~~v~v~~-----~~g~v~nrl~---~~~~ 502 (539)
.++|....+.. .++.|. +++ +..+.+.++++.+++ .++++.+ ..+++.|.++ .+++
T Consensus 158 ~~~Pe~~~eG~~~~~~~~p~~iviG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~ 236 (478)
T 2y0c_A 158 VSNPEFLKEGAAVDDFTRPDRIVIGC-DDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFM 236 (478)
T ss_dssp EECCCCCCTTCHHHHHHSCSCEEEEC-CSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEChhhhcccceeeccCCCCEEEEEE-CCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443332 244333 234 789999999998775 5777764 4467778775 5788
Q ss_pred HHHHHHHHc-CCCHHHHHHHH
Q 009256 503 QSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 503 ~Ea~~l~~~-G~~~~~id~a~ 522 (539)
||+..+++. |++++++.+++
T Consensus 237 nE~~~la~~~Gid~~~v~~~i 257 (478)
T 2y0c_A 237 NELANLADRFGADIEAVRRGI 257 (478)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 999999987 99999999888
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=161.74 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=102.7
Q ss_pred cCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHH
Q 009256 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPY 501 (539)
Q Consensus 422 ~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~ 501 (539)
.+++.+.++. ...+|.++++.|+++ .+++|+++++.|++++++.+..+++.+|+.|+.++|.+||++||+++++
T Consensus 324 ~~~~~~~~~~--~~~~~~~~v~~~~~~----~~~vev~~~~~t~~~~~~~~~~~~~~~gk~~~~~~d~~g~i~~Rll~~~ 397 (483)
T 3mog_A 324 ETQGETAQAL--AIRLARPVVVIDKMA----GKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWRTVAMI 397 (483)
T ss_dssp ECSSSCHHHH--HHHHTSCEEEEECCS----SSEEEEEECTTSCHHHHHHHHHHHHTTTCEEEECCCCTTTTHHHHHHHH
T ss_pred ccCCcchHHH--hhccccceeeeeccc----cceEEEecCCCCCHHHHHHHHHHHHHcCCceeeecccccHHHHHHHHHH
Confidence 5667777666 345678999999987 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 502 SQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 502 ~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
+|||.+++++|+ +++|||.+| .|+|||+|||+|+|.++
T Consensus 398 ~nEA~~~l~eGvas~~diD~a~~~G~G~P~GPl~~~D~~G 437 (483)
T 3mog_A 398 INEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLG 437 (483)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHSCCSSCHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCCCCCCCHHHHHHHhC
Confidence 999999999998 999999999 89999999999999764
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=149.59 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=126.4
Q ss_pred EEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHH
Q 009256 15 VAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNL 93 (539)
Q Consensus 15 v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (539)
|+++..+.. ..|+++..+.+.+.++++.+.++ .+++|+|++.| |+|+++.... + ..+..++ .+
T Consensus 120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~~--------l-~~~~~i~-~a 183 (304)
T 2f9y_B 120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALMS--------L-MQMAKTS-AA 183 (304)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHHH--------H-HHHHHHH-HH
T ss_pred EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHHH--------H-HHHHHHH-HH
Confidence 444455444 35999999999999999999988 89999999866 8888664321 1 1122333 33
Q ss_pred H---HhCCCcEEEEEcCccccch-hHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC
Q 009256 94 I---EDCKKPIVAAVEGLALGGG-LELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (539)
Q Consensus 94 i---~~~~~p~iaav~G~a~GgG-~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~ 169 (539)
+ ...++|+|++|+|.|+||| +.++++||++||.++|+|++. |...+++.+|.. ++++..
T Consensus 184 l~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~------l~~~~~ 246 (304)
T 2f9y_B 184 LAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK------LPPGFQ 246 (304)
T ss_dssp HHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC------CCTTTT
T ss_pred HHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc------CCcccC
Confidence 4 4559999999999999999 788999999999999999987 345566767753 578999
Q ss_pred CHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 009256 170 TSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 170 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
+|++++++|+||.|++++++.+.+.+++..++..|
T Consensus 247 ~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~~~~ 281 (304)
T 2f9y_B 247 RSEFLIEKGAIDMIVRRPEMRLKLASILAKLMNLP 281 (304)
T ss_dssp BHHHHGGGTCCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHhcCCccEEeCcHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999998754
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=149.30 Aligned_cols=188 Identities=11% Similarity=0.054 Sum_probs=133.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
.++|+|||+|.||.+||..|+++|++|++||+++++++.+.+ . .+...+++ +.++
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~ 77 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALER-----------E-------------GIAGARSIEEFCA 77 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT-----------T-------------TCBCCSSHHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------C-------------CCEEeCCHHHHHh
Confidence 468999999999999999999999999999999998776532 1 23344455 5566
Q ss_pred Cc---CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhcc-CCCCcEEEeccCCCCC---CCCeee
Q 009256 387 DV---DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT-SSQDRIIGAHFFSPAH---VMPLLE 457 (539)
Q Consensus 387 ~a---DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~-~~~~r~vg~h~~~p~~---~~~~ve 457 (539)
++ |+||+|+|.+ ....++.++.+.++++++|++.+++.+.. .+...+ ....+++......++. .++ .-
T Consensus 78 ~a~~~DvVi~~vp~~--~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~i 154 (358)
T 4e21_A 78 KLVKPRVVWLMVPAA--VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CL 154 (358)
T ss_dssp HSCSSCEEEECSCGG--GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EE
T ss_pred cCCCCCEEEEeCCHH--HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-ee
Confidence 67 9999999977 45677788999999999998877766543 333333 2233455543332221 122 22
Q ss_pred eecCCCCcHHHHHHHHHHHHHcC--------------------ceeEEEcC-cccchh----hcchH---HHHHHHHHHH
Q 009256 458 IVRTERTSAQVILDLMTVGKIIK--------------------KVPVVVGN-CTGFAV----NRAFF---PYSQSARLLV 509 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg--------------------~~~v~v~~-~~g~v~----nrl~~---~~~~Ea~~l~ 509 (539)
++.+ +++++++++++++.+| +.++++++ ..|.++ |-++. ..+.|++.++
T Consensus 155 m~GG---~~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la 231 (358)
T 4e21_A 155 MIGG---EKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNIL 231 (358)
T ss_dssp EEES---CHHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecC---CHHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 7899999999999999 57888875 344433 33332 4456999999
Q ss_pred Hc-------------------------CCCHHHHHHHH-HhC
Q 009256 510 SL-------------------------GVDVFRIDSAI-RSF 525 (539)
Q Consensus 510 ~~-------------------------G~~~~~id~a~-~~~ 525 (539)
++ |+++++|-++| .+.
T Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~ 273 (358)
T 4e21_A 232 HHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGS 273 (358)
T ss_dssp HTTTCC--------------CGGGCCCCCCHHHHHHHHTTTS
T ss_pred HhcccccccccccccccccccchhcccCCCHHHHHHHHhCcc
Confidence 87 57999999998 444
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-15 Score=150.25 Aligned_cols=194 Identities=10% Similarity=0.001 Sum_probs=124.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+||+|||+|.||.+++..|+++ ++| .+||+++++.+.+.+.+ +. .++++ +.++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~----------------------g~--~~~~~~~~~~ 57 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY----------------------GG--KAATLEKHPE 57 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT----------------------CC--CCCSSCCCCC
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc----------------------CC--ccCCHHHHHh
Confidence 4799999999999999999988 999 59999998877653311 11 34455 5578
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEecc----CCCCCC-CCeeeeecC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHF----FSPAHV-MPLLEIVRT 461 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~----~~p~~~-~~~vei~~~ 461 (539)
+||+||+|+|++. ...++.++. .++++|++.+++.+.+.+... .+.+.|+ .+++.. ....++...
T Consensus 58 ~~DvVilav~~~~--~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~-----~~~~~~p~~~~~g~~~~~~~~~~~~~~ 127 (276)
T 2i76_A 58 LNGVVFVIVPDRY--IKTVANHLN---LGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFG 127 (276)
T ss_dssp ---CEEECSCTTT--HHHHHTTTC---CSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEE
T ss_pred cCCEEEEeCChHH--HHHHHHHhc---cCCCEEEECCCCCcHHHHHHh-----hccccchhhhcCCCchhHHHhCCCeEE
Confidence 9999999999765 456666554 577788876667777655432 3445563 332321 112222111
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcCc--cc-----chhhcchHHHHHHHHHHHHc-CCCHH----------HHHHHH-
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC--TG-----FAVNRAFFPYSQSARLLVSL-GVDVF----------RIDSAI- 522 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~~--~g-----~v~nrl~~~~~~Ea~~l~~~-G~~~~----------~id~a~- 522 (539)
..++++.++.++++++.+|+.++++++. +. .+++.++..++.|+..++.. |++.+ .++.++
T Consensus 128 ~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~~~~~~l~~n~~~~~~~~a~~~~~~~Gl~~~~a~~~~l~~~~~~~~~~ 207 (276)
T 2i76_A 128 LEGDERGLPIVKKIAEEISGKYFVIPSEKKKAYHLAAVIASNFPVALAYLSKRIYTLLGLDEPELLIHTLMKGVADNIKK 207 (276)
T ss_dssp ECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHHHHHHHHHHTTHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEeChHHHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHh
Confidence 2235677999999999999999998742 11 23444667778898888875 99554 455555
Q ss_pred Hh-CCCCcchhhcccc
Q 009256 523 RS-FGLPIGPFQEGGC 537 (539)
Q Consensus 523 ~~-~g~~~Gpf~~~d~ 537 (539)
.+ .+.++||++..|.
T Consensus 208 ~gp~~~~tgP~~r~D~ 223 (276)
T 2i76_A 208 MRVECSLTGPVKRGDW 223 (276)
T ss_dssp SCGGGGCCSHHHHTCH
T ss_pred cChHhhCCCCcccCCH
Confidence 33 5568899988884
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=153.66 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=134.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+++|+|||+|.||..+|..|++.|++|++||+++++++.+.+ .| +....+. +.++
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 85 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-----------EG-------------ARLGRTPAEVVS 85 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-----------TT-------------CEECSCHHHHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------cC-------------CEEcCCHHHHHh
Confidence 468999999999999999999999999999999987766422 11 2223344 5578
Q ss_pred CcCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCC--hHHHhhccC-CCCcEEEeccCCCC---CCCCeeee
Q 009256 387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTID--LNIVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei 458 (539)
++|+||+|+|++..++..+.. .+.+.+.++++|++.+++.+ ...+...+. .+.++++.++++.+ ..+.++.+
T Consensus 86 ~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~ 165 (316)
T 2uyy_A 86 TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVIL 165 (316)
T ss_dssp HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEE
T ss_pred cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEE
Confidence 899999999976665544332 13466788888876554432 234444442 35578877665433 23455666
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeEEEcCc-c----cchhhcc---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNC-T----GFAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~----g~v~nrl---~~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
+++ +++.++.+.++++.+|..++++++. . .++.|.+ ...++.|++.+++. |++++++++++
T Consensus 166 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~ 235 (316)
T 2uyy_A 166 AAG---DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDIL 235 (316)
T ss_dssp EEE---CHHHHHHTHHHHHHHEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eCC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 666 5789999999999999999888762 1 1355665 35677899999876 99999999988
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=140.44 Aligned_cols=182 Identities=12% Similarity=0.084 Sum_probs=129.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
||+|||+|.||.+++..|+++| ++|++||+++++++.+.+.. .+...++. +.+ +
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~-----------------------g~~~~~~~~~~~-~ 57 (263)
T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL-----------------------GVETSATLPELH-S 57 (263)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT-----------------------CCEEESSCCCCC-T
T ss_pred EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc-----------------------CCEEeCCHHHHh-c
Confidence 7999999999999999999999 99999999998877653310 13334445 667 9
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCC-eeeeecCCCCcH
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTSA 466 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~-~vei~~~~~t~~ 466 (539)
||+||+|+| ......++.++.+ + +++|++.++++++..+...+....+++...+..|..... ...++.+..+++
T Consensus 58 ~D~vi~~v~--~~~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~~~~~~~~~v~~~~~~~~~~~~g~~~i~~~~~~~~ 132 (263)
T 1yqg_A 58 DDVLILAVK--PQDMEAACKNIRT--N-GALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE 132 (263)
T ss_dssp TSEEEECSC--HHHHHHHHTTCCC--T-TCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred CCEEEEEeC--chhHHHHHHHhcc--C-CCEEEEecCCCCHHHHHHHcCCCCcEEEEcCCHHHHHcCceEEEEcCCCCCH
Confidence 999999999 4445566665544 4 888888888988888877776655788885554554443 445667777899
Q ss_pred HHHHHHHHHHHHcCceeEEEc-Cc--------ccchhhcchHHHHHHHHH-HHHcCCCHHHHHHHH
Q 009256 467 QVILDLMTVGKIIKKVPVVVG-NC--------TGFAVNRAFFPYSQSARL-LVSLGVDVFRIDSAI 522 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v~v~-~~--------~g~v~nrl~~~~~~Ea~~-l~~~G~~~~~id~a~ 522 (539)
+.++.++++++.+|..+ +++ +. .| ..+.+++.++..... ..+.|++++++.+.+
T Consensus 133 ~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~al~g-~~~~~~~~~~~~l~e~~~~~G~~~~~~~~~~ 196 (263)
T 1yqg_A 133 TDRRIADRIMKSVGLTV-WLDDEEKMHGITGISG-SGPAYVFYLLDALQNAAIRQGFDMAEARALS 196 (263)
T ss_dssp HHHHHHHHHHHTTEEEE-ECSSTTHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEE-EeCChhhccHHHHHHc-cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999876 666 41 11 112223333322222 335599888877765
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-15 Score=142.11 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++.++.+++.+.|..++.+++++.|+|.- .|.|+++.. ...++ +.|..+++||++.++
T Consensus 53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~a----------------g~~I~-~~i~~~~~pV~t~v~ 111 (218)
T 1y7o_A 53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSA----------------GLAIV-DTMNFIKADVQTIVM 111 (218)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHH----------------HHHHH-HHHHHSSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHH----------------HHHHH-HHHHhcCCCEEEEEc
Confidence 488999999999999999887788888863 344544321 22455 678899999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchh------------------hccccccCH--HHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVGL--SKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~vG~--~~a~~l~l 164 (539)
|.|.++|+.|+++||. |+|.++++|++++.. |..|..|.. ..+++..|. .++.+++.
T Consensus 112 G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~ 190 (218)
T 1y7o_A 112 GMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAE 190 (218)
T ss_dssp EEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred cEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 9999999999999999 999999999999987 444433432 456777776 58889999
Q ss_pred cCCCCCHHHHHHcCCcceecCcch
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSEE 188 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~~ 188 (539)
+|+.++|+||+++||||+|+++++
T Consensus 191 ~~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 191 RDNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp SCCCBCHHHHHHHTSCSEECCCC-
T ss_pred CCCEEcHHHHHHCCCCcEEcCcCC
Confidence 999999999999999999998775
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=149.50 Aligned_cols=199 Identities=17% Similarity=0.159 Sum_probs=133.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH----HHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE----ANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+... ..+..+++. ....+++++++++ ++
T Consensus 10 ~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~--------~~~~g~l~~ttd~~ea 81 (446)
T 4a7p_A 10 RIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVAS--------NVKAGRLSFTTDLAEG 81 (446)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHH--------HHHTTCEEEESCHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHh--------hcccCCEEEECCHHHH
Confidence 7999999999999999999999999999999999888744210 000000100 0012467888888 78
Q ss_pred CCCcCEEEEcccCChh---------HHHHHHHHHHHhCCCCeEEEecCCCCChHH---Hhhcc----CCCCcEEEeccCC
Q 009256 385 FKDVDMVIEAVIESVP---------LKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKT----SSQDRIIGAHFFS 448 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~---------~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~---i~~~~----~~~~r~vg~h~~~ 448 (539)
+++||+||+|||.... ..+.+++.+.++++++++|+..| ++++.+ +...+ ....-.+.. +
T Consensus 82 ~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgtt~~l~~~l~e~~~~~d~~v~~---~ 157 (446)
T 4a7p_A 82 VKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKS-TVPVGTGDEVERIIAEVAPNSGAKVVS---N 157 (446)
T ss_dssp HTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECS-CCCTTHHHHHHHHHHHHSTTSCCEEEE---C
T ss_pred HhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeC-CCCchHHHHHHHHHHHhCCCCCceEEe---C
Confidence 9999999999987653 46777889999999999887654 555432 22211 111111221 2
Q ss_pred CCCC--CCe--------eeeecCCCCcHHHHHHHHHHHHHcCce---eEEEcCcc-----cchhhcch---HHHHHHHHH
Q 009256 449 PAHV--MPL--------LEIVRTERTSAQVILDLMTVGKIIKKV---PVVVGNCT-----GFAVNRAF---FPYSQSARL 507 (539)
Q Consensus 449 p~~~--~~~--------vei~~~~~t~~e~~~~~~~l~~~lg~~---~v~v~~~~-----g~v~nrl~---~~~~~Ea~~ 507 (539)
|... +.. ..++++ .++++.+.++++++.+++. ++++++.. +++.|-++ .+++||+..
T Consensus 158 Pe~a~eG~a~~d~~~p~~ivvG~--~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~ 235 (446)
T 4a7p_A 158 PEFLREGAAIEDFKRPDRVVVGT--EDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIAD 235 (446)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEC--SCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhccCCCEEEEeC--CcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 111 113333 2589999999999999875 57776532 34445443 367889999
Q ss_pred HHHc-CCCHHHHHHHH
Q 009256 508 LVSL-GVDVFRIDSAI 522 (539)
Q Consensus 508 l~~~-G~~~~~id~a~ 522 (539)
+++. |++++++-+++
T Consensus 236 l~~~~GiD~~~v~~~~ 251 (446)
T 4a7p_A 236 LCEQVGADVQEVSRGI 251 (446)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 9987 99999999998
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-14 Score=149.80 Aligned_cols=197 Identities=14% Similarity=0.089 Sum_probs=130.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.|+.|||+|.||.++|.+|+++||+|++||+++++++.+.+.. +..++++++. .-..+++.++++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~--------~~~~g~l~~ttd--- 80 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEE--------VLSSGKLKVSTT--- 80 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHH--------HHHTTCEEEESS---
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHh--------hcccCceEEeCc---
Confidence 4899999999999999999999999999999999998875421 0001111100 001245677766
Q ss_pred CCCcCEEEEcccCChh----------HHHHHHHHHHHhCCCCeEEEecCCCCChHH---Hhhcc-C-CC----Cc-EEEe
Q 009256 385 FKDVDMVIEAVIESVP----------LKQKIFSELEKACPPHCILATNTSTIDLNI---VGEKT-S-SQ----DR-IIGA 444 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~----------~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~---i~~~~-~-~~----~r-~vg~ 444 (539)
+++||+||.|||.+.. ......+.+.++++++++|+.. |++++.. +...+ . .. .. .+.
T Consensus 81 ~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~-STV~pgtt~~v~~~i~e~~g~~~~~d~~v~- 158 (431)
T 3ojo_A 81 PEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVE-STIAPKTMDDFVKPVIENLGFTIGEDIYLV- 158 (431)
T ss_dssp CCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEEC-SCCCTTHHHHTHHHHHHTTTCCBTTTEEEE-
T ss_pred hhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEe-cCCChhHHHHHHHHHHHHcCCCcCCCeEEE-
Confidence 4589999999997652 3455667899999999988754 4555442 22211 1 11 11 111
Q ss_pred ccCCCCCCCCe---------eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCc-----ccchhhcchH---HHHHHHHH
Q 009256 445 HFFSPAHVMPL---------LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC-----TGFAVNRAFF---PYSQSARL 507 (539)
Q Consensus 445 h~~~p~~~~~~---------vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~-----~g~v~nrl~~---~~~~Ea~~ 507 (539)
++|....+. ..++.|. ++++.+.++++++.+++.++++++. ..++.|-++. +++||+..
T Consensus 159 --~~Pe~~~~G~A~~~~~~p~~Iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~ 234 (431)
T 3ojo_A 159 --HCPERVLPGKILEELVHNNRIIGGV--TKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTK 234 (431)
T ss_dssp --ECCCCCCTTSHHHHHHHSCEEEEES--SHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ECCCcCCCcchhhcccCCCEEEEeC--CHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123221111 0234442 6899999999999999888887542 1234454433 77899999
Q ss_pred HHHc-CCCHHHHHHHH
Q 009256 508 LVSL-GVDVFRIDSAI 522 (539)
Q Consensus 508 l~~~-G~~~~~id~a~ 522 (539)
+++. |+++.++-+++
T Consensus 235 l~e~~GiD~~~v~~~~ 250 (431)
T 3ojo_A 235 ICNNLNINVLDVIEMA 250 (431)
T ss_dssp HHHHTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 9987 99999999998
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-15 Score=151.44 Aligned_cols=195 Identities=15% Similarity=0.196 Sum_probs=131.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.++||+|||+|.||.++|..|++ |++|++||+++++++.+.+.. +..+..++..+ ..++++++++
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~----------~~~l~~ttd~ 103 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK----------PLNFRATTDK 103 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS----------CCCEEEESCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc----------cCCeEEEcCH
Confidence 45699999999999999999998 999999999999988875421 11111222111 1357788887
Q ss_pred -cCCCCcCEEEEcccCCh---------hHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccCCCCcEEEeccCCC
Q 009256 383 -SEFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSP 449 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~---------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~~~~r~vg~h~~~p 449 (539)
+++++||+||+|+|++. .....+.+.+.+ ++++++|+. .|++++. ++...+.. ..+. | +|
T Consensus 104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~-~STv~pgtt~~l~~~l~~--~~v~--~-sP 176 (432)
T 3pid_A 104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMII-KSTIPVGFTRDIKERLGI--DNVI--F-SP 176 (432)
T ss_dssp HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEE-CSCCCTTHHHHHHHHHTC--CCEE--E-CC
T ss_pred HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEE-eCCCChHHHHHHHHHHhh--ccEe--e-cC
Confidence 78899999999999864 245667788888 888888875 4455543 34443332 2222 1 33
Q ss_pred CCCCCe----------eeeecCCCCcHHHHHHHHHHHHH--cCc-eeEEEcC-----cccchhhcch---HHHHHHHHHH
Q 009256 450 AHVMPL----------LEIVRTERTSAQVILDLMTVGKI--IKK-VPVVVGN-----CTGFAVNRAF---FPYSQSARLL 508 (539)
Q Consensus 450 ~~~~~~----------vei~~~~~t~~e~~~~~~~l~~~--lg~-~~v~v~~-----~~g~v~nrl~---~~~~~Ea~~l 508 (539)
....+. ..++++ +++..+.+.+++.. ++. .++++.+ ...++.|-++ .+++||+..+
T Consensus 177 e~~~~G~A~~~~l~p~rIvvG~---~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~l 253 (432)
T 3pid_A 177 EFLREGRALYDNLHPSRIVIGE---RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSY 253 (432)
T ss_dssp CCCCTTSHHHHHHSCSCEEESS---CSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcchhhhcccCCceEEecC---CHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211 124444 45677889999987 553 3555543 2234556543 3678999999
Q ss_pred HHc-CCCHHHHHHHH
Q 009256 509 VSL-GVDVFRIDSAI 522 (539)
Q Consensus 509 ~~~-G~~~~~id~a~ 522 (539)
++. |+++.++-+++
T Consensus 254 ae~~GiD~~~v~~~~ 268 (432)
T 3pid_A 254 AESQGLNSKQIIEGV 268 (432)
T ss_dssp HHHTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHH
Confidence 987 99999999998
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=149.15 Aligned_cols=153 Identities=14% Similarity=0.166 Sum_probs=115.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.++||+|||+|.||.+||..|.++|++|++||++++.++.+.+ .| +..+++. +.+
T Consensus 7 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~-----------~G-------------~~~~~~~~e~~ 62 (341)
T 3ktd_A 7 ISRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVD-----------EG-------------FDVSADLEATL 62 (341)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHH-----------TT-------------CCEESCHHHHH
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------CeeeCCHHHHH
Confidence 3568999999999999999999999999999999988776532 12 1223333 333
Q ss_pred ----CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCC-C------
Q 009256 386 ----KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH-V------ 452 (539)
Q Consensus 386 ----~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~-~------ 452 (539)
.+||+||+|+| +.....+++++.++ +++++|++.+|... ...+..... ..+|++.||+..+. .
T Consensus 63 ~~a~~~aDlVilavP--~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~-~~~~v~~HPmaG~e~sG~~aa~ 138 (341)
T 3ktd_A 63 QRAAAEDALIVLAVP--MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM-QHRYVGSHPMAGTANSGWSASM 138 (341)
T ss_dssp HHHHHTTCEEEECSC--HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC-GGGEECEEECCSCC-CCGGGCC
T ss_pred HhcccCCCEEEEeCC--HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC-CCcEecCCccccccccchhhhh
Confidence 35799999999 45677888888887 78888876555432 234544443 46899999977653 1
Q ss_pred -----CCeeeeecCCCCcHH--------HHHHHHHHHHHcCceeEEEc
Q 009256 453 -----MPLLEIVRTERTSAQ--------VILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 453 -----~~~vei~~~~~t~~e--------~~~~~~~l~~~lg~~~v~v~ 487 (539)
+..+.+++++.++++ .++.++++++.+|..+++++
T Consensus 139 ~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga~v~~~~ 186 (341)
T 3ktd_A 139 DGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALAVGAEVVPSR 186 (341)
T ss_dssp SSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred hHHhcCCeEEEEeCCCCChhhhccchHHHHHHHHHHHHHcCCEEEEeC
Confidence 234667888888888 99999999999999999885
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-15 Score=146.41 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=131.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||..++..|++.|++|++||+++++.+.+.+ .| +...+++ +.+.+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~ 60 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA-----------QG-------------AQACENNQKVAAA 60 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT-----------TT-------------CEECSSHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence 58999999999999999999999999999999988766522 11 2334444 55778
Q ss_pred cCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCC--hHHHhhccCC-CCcEEEeccCCCCC----CCCeeee
Q 009256 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH----VMPLLEI 458 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~-~~r~vg~h~~~p~~----~~~~vei 458 (539)
+|+||+|+|.+..++..+. .++.+.++++++|++.+++.+ ...+...+.. ..+++.. |..+.. .+.+..+
T Consensus 61 ~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~-p~~~~~~~a~~g~~~~~ 139 (301)
T 3cky_A 61 SDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDA-PVSGGTKGAEAGTLTIM 139 (301)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEEC-CEESHHHHHHHTCEEEE
T ss_pred CCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEc-cCCCCHHHHHcCCeEEE
Confidence 9999999997666655444 268888899999988777763 3355444332 2344432 211110 1223344
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeEEEcC-cccc----hhhcc---hHHHHHHHHHHHHc-CCCHHHHHHHHH
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF----AVNRA---FFPYSQSARLLVSL-GVDVFRIDSAIR 523 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~----v~nrl---~~~~~~Ea~~l~~~-G~~~~~id~a~~ 523 (539)
+++ +++.++.++++++.+|..++++++ ..|. +.|.+ +...+.|++.+++. |++++++++++.
T Consensus 140 ~~g---~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~ 210 (301)
T 3cky_A 140 VGA---SEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIG 210 (301)
T ss_dssp EES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 454 789999999999999999888864 3333 34555 33567899988876 999999998883
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.7e-14 Score=146.50 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=134.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH----HHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE----ANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||+|.||.++|..|+++|++|++||+++++++.+.+... ..+...++. ....+++++++++ +
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~--------~~~~~~l~~t~d~~e 74 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIAR--------NVKAGRLRFGTEIEQ 74 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHH--------HHHTTSEEEESCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHh--------hcccCcEEEECCHHH
Confidence 48999999999999999999999999999999999887654210 000000000 0012457778888 5
Q ss_pred CCCCcCEEEEcccCChh--------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccCC-------CCc-EEEe
Q 009256 384 EFKDVDMVIEAVIESVP--------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS-------QDR-IIGA 444 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~--------~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~~-------~~r-~vg~ 444 (539)
++++||+||+|+|.+.. ....+++++.++++++++|++.+ ++++. .+...+.. ... .+..
T Consensus 75 a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S-Tv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~ 153 (450)
T 3gg2_A 75 AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS-TVPVGSYRLIRKAIQEELDKREVLIDFDIAS 153 (450)
T ss_dssp HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee-eCCCcchHHHHHHHHHhccccCcCcceeEEe
Confidence 68999999999987642 67788899999999999887655 44433 22221110 011 1121
Q ss_pred ccCCCCCCCC--ee--------eeecCCCCcHHHHHHHHHHHHHcCc--eeEEEcCcc-----cchhhcch---HHHHHH
Q 009256 445 HFFSPAHVMP--LL--------EIVRTERTSAQVILDLMTVGKIIKK--VPVVVGNCT-----GFAVNRAF---FPYSQS 504 (539)
Q Consensus 445 h~~~p~~~~~--~v--------ei~~~~~t~~e~~~~~~~l~~~lg~--~~v~v~~~~-----g~v~nrl~---~~~~~E 504 (539)
+|....+ .+ .++++ .++++.+.++++++.+++ .++++.+.. +++.|.+. .+++||
T Consensus 154 ---~Pe~a~eG~~~~~~~~p~~ivvG~--~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE 228 (450)
T 3gg2_A 154 ---NPEFLKEGNAIDDFMKPDRVVVGV--DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMND 228 (450)
T ss_dssp ---CCCCCCTTSHHHHHHSCSCEEEEE--SSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---chhhhcccchhhhccCCCEEEEEc--CCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222221 11 13333 268999999999999987 366665532 34556543 367889
Q ss_pred HHHHHHc-CCCHHHHHHHH
Q 009256 505 ARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 505 a~~l~~~-G~~~~~id~a~ 522 (539)
+..+++. |++++++.+++
T Consensus 229 ~~~l~~~~Gid~~~v~~~~ 247 (450)
T 3gg2_A 229 VANLCERVGADVSMVRLGI 247 (450)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 9999988 99999999999
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-14 Score=143.47 Aligned_cols=187 Identities=18% Similarity=0.194 Sum_probs=129.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||..++..|.+.|++|++||+++++.+.+.+ .| +...+++ +.+++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~ 61 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------AG-------------AETASTAKAIAEQ 61 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECSSHHHHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-----------CC-------------CeecCCHHHHHhC
Confidence 48999999999999999999999999999999988776532 11 2334455 55788
Q ss_pred cCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCCh--HHHhhccCC-CCcEEEeccCC-CC--CCCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFS-PA--HVMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~-~~r~vg~h~~~-p~--~~~~~vei~ 459 (539)
+|+||+|+|++..++..++ +++.+.++++++|++.+++.+. ..+...+.. ...++..+.+. ++ ....+..++
T Consensus 62 ~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~ 141 (299)
T 1vpd_A 62 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV 141 (299)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEe
Confidence 9999999997666554443 5677888999988877666543 345444432 22333321111 11 011223333
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcC-cccch---hhcchH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGFA---VNRAFF----PYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~v---~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
++ +++.++.++++++.+|..++++++ ..|.. +|+.+. ..++|++.+++. |+++++++.++
T Consensus 142 ~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 210 (299)
T 1vpd_A 142 GG---DKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAI 210 (299)
T ss_dssp ES---CHHHHHHHHHHHHTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHHHcCCeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 44 789999999999999999988864 34433 233333 567799988866 99999999888
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-15 Score=148.89 Aligned_cols=182 Identities=18% Similarity=0.127 Sum_probs=124.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
||+|||+|.||.+++..|++.|++|++||+++++++.+.+ . .+..+++. +.++++
T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~~ 57 (296)
T 2gf2_A 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQD-----------A-------------GEQVVSSPADVAEKA 57 (296)
T ss_dssp CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHT-----------T-------------TCEECSSHHHHHHHC
T ss_pred eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------c-------------CCeecCCHHHHHhcC
Confidence 7999999999999999999999999999999988776522 1 13334455 557889
Q ss_pred CEEEEcccCChhHHHHHHHH---HHHhCCCCeEEEecCCCCChHHHhh---ccCCCCcEEEeccCCCCCCC-------Ce
Q 009256 389 DMVIEAVIESVPLKQKIFSE---LEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHVM-------PL 455 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~---l~~~~~~~~ii~s~ts~~~~~~i~~---~~~~~~r~vg~h~~~p~~~~-------~~ 455 (539)
|+||+|+|.+..++. ++.+ +.+.++++++|++ ++++.+..... .+.. + +.+|.+.|... ..
T Consensus 58 Dvvi~~vp~~~~~~~-v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~--~--g~~~~~~p~~~g~~~a~~~~ 131 (296)
T 2gf2_A 58 DRIITMLPTSINAIE-AYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEK--M--GAVFMDAPVSGGVGAARSGN 131 (296)
T ss_dssp SEEEECCSSHHHHHH-HHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHH--T--TCEEEECCEESHHHHHHHTC
T ss_pred CEEEEeCCCHHHHHH-HHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHH--c--CCEEEEcCCCCChhHHhcCc
Confidence 999999986665544 4443 3456788888888 77777764432 2211 1 12222222111 11
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-cccc---hhhcchH----HHHHHHHHHHHc-CCCHHHHHHHHH
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTGF---AVNRAFF----PYSQSARLLVSL-GVDVFRIDSAIR 523 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g~---v~nrl~~----~~~~Ea~~l~~~-G~~~~~id~a~~ 523 (539)
..++.+ .+++.++.++++++.+|..++++++ ..|. ++|+.+. ..++|++.+++. |++++++++++.
T Consensus 132 ~~~~~~--~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~ 206 (296)
T 2gf2_A 132 LTFMVG--GVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILN 206 (296)
T ss_dssp EEEEEE--SCGGGHHHHHHHHTTTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEeC--CCHHHHHHHHHHHHHHcCCeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 223333 3688899999999999999888865 2222 2344442 577899998876 999999999883
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=151.74 Aligned_cols=204 Identities=15% Similarity=0.169 Sum_probs=136.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHh-----hcccccC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL-----KMLKGVL 380 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~ 380 (539)
|+||+|||+|.||.++|..|+++ |++|++||+++++++.+.+.. ..+......... .++.+++
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~----------~~i~e~~l~~~~~~~~~~~~~~t~ 74 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPT----------LPIYEPGLKEVVESCRGKNLFFST 74 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS----------CSSCCTTHHHHHHHHBTTTEEEES
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCC----------CCcCCCCHHHHHHHhhcCCEEEEC
Confidence 46899999999999999999998 899999999999887753210 000000000000 2466667
Q ss_pred Cc-cCCCCcCEEEEcccCChhH-------------HHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccCCC-CcEE
Q 009256 381 DY-SEFKDVDMVIEAVIESVPL-------------KQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQ-DRII 442 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe~~~~-------------~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~~~-~r~v 442 (539)
++ +++++||+||+|+|+.... ...+.+++.++++++++|+..+ +.++. .+...+... ...+
T Consensus 75 ~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~g~~~~l~~~l~~~~~~~~ 153 (467)
T 2q3e_A 75 NIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKS-TVPVRAAESIRRIFDANTKPNL 153 (467)
T ss_dssp CHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECS-CCCTTHHHHHHHHHHHTCCTTC
T ss_pred CHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECC-cCCchHHHHHHHHHHHhCCCCC
Confidence 76 5788999999999865532 4567788888899998886543 33332 233222111 0011
Q ss_pred Eec-cCCCCCCCCee----------eeecCCC--CcHHHHHHHHHHHHHc-CceeEEEcC-----cccchhhcch---HH
Q 009256 443 GAH-FFSPAHVMPLL----------EIVRTER--TSAQVILDLMTVGKII-KKVPVVVGN-----CTGFAVNRAF---FP 500 (539)
Q Consensus 443 g~h-~~~p~~~~~~v----------ei~~~~~--t~~e~~~~~~~l~~~l-g~~~v~v~~-----~~g~v~nrl~---~~ 500 (539)
..+ .++|....+.. .+++++. ++++..+.++++++.+ |..++++++ ..+++.|.++ .+
T Consensus 154 d~~V~~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia 233 (467)
T 2q3e_A 154 NLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRIS 233 (467)
T ss_dssp EEEEEECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHH
Confidence 111 23444333322 2344433 3789999999999999 778888764 3457778763 47
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHH
Q 009256 501 YSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 501 ~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
+++|+..+++. |++++++.+++
T Consensus 234 ~~nE~~~l~~~~Gid~~~v~~~~ 256 (467)
T 2q3e_A 234 SINSISALCEATGADVEEVATAI 256 (467)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHH
Confidence 88999999988 99999999999
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=141.61 Aligned_cols=158 Identities=15% Similarity=0.099 Sum_probs=118.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.++||+|||+|.||.+++..|.++ |++|++||+++++.+.+.+ .|..+ ..++++ +
T Consensus 5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-----------~g~~~-----------~~~~~~~~ 62 (290)
T 3b1f_A 5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE-----------RGIVD-----------EATADFKV 62 (290)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-----------TTSCS-----------EEESCTTT
T ss_pred ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH-----------cCCcc-----------cccCCHHH
Confidence 357899999999999999999987 6899999999988766522 12110 223455 5
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEEecCCCCC--hHHHhhccCC-CCcEEEeccC------CCCC--
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKA-CPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFF------SPAH-- 451 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~s~ts~~~--~~~i~~~~~~-~~r~vg~h~~------~p~~-- 451 (539)
.+++||+||+|+|.+. ...+++++.++ ++++++|++.+++.. ...+...+.. ..++++.||+ .|..
T Consensus 63 ~~~~aDvVilavp~~~--~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~ 140 (290)
T 3b1f_A 63 FAALADVIILAVPIKK--TIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAAN 140 (290)
T ss_dssp TGGGCSEEEECSCHHH--HHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCC
T ss_pred hhcCCCEEEEcCCHHH--HHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhh
Confidence 6789999999999544 47888889888 888988875544322 2455555554 6689999987 4432
Q ss_pred ----CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 452 ----VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 452 ----~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+..+.++++..++++.++.++++++.+|..++++.+
T Consensus 141 ~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 181 (290)
T 3b1f_A 141 VNLFENAYYIFSPSCLTKPNTIPALQDLLSGLHARYVEIDA 181 (290)
T ss_dssp TTTTTTSEEEEEECTTCCTTHHHHHHHHTGGGCCEEEECCH
T ss_pred HHHhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 3355777887778999999999999999999888764
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5.4e-14 Score=137.24 Aligned_cols=185 Identities=11% Similarity=0.093 Sum_probs=130.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++||+|||+|.||..++..|.+.|++|.+||+++++.+.+.+.. .+...+++ +.++
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----------------------g~~~~~~~~~~~~ 59 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------------------ALPYAMSHQDLID 59 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------------------TCCBCSSHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc-----------------------CCEeeCCHHHHHh
Confidence 35899999999999999999999999999999998877654321 12334445 5577
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCC-eeeeecCCCCc
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMP-LLEIVRTERTS 465 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~-~vei~~~~~t~ 465 (539)
++|+||+|+|. .....++.+ +.+++++++.+++++...+...+....+++..++..|..... ...++++..++
T Consensus 60 ~~D~Vi~~v~~--~~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~~~~~~~~~v~~~p~~~~~~~~g~~~i~~~~~~~ 133 (259)
T 2ahr_A 60 QVDLVILGIKP--QLFETVLKP----LHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVS 133 (259)
T ss_dssp TCSEEEECSCG--GGHHHHHTT----SCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCC
T ss_pred cCCEEEEEeCc--HhHHHHHHH----hccCCEEEEeCCCCCHHHHHHhcCCCCCEEEEcCCchHHHcCceEEEEcCCCCC
Confidence 99999999993 334444443 347778888888888888877766555788877776665554 45566777789
Q ss_pred HHHHHHHHHHHHHcCceeEEEcCcc-c-c-----hhhcchHHHHHHHH-HHHHcCCCHHHHHHHH
Q 009256 466 AQVILDLMTVGKIIKKVPVVVGNCT-G-F-----AVNRAFFPYSQSAR-LLVSLGVDVFRIDSAI 522 (539)
Q Consensus 466 ~e~~~~~~~l~~~lg~~~v~v~~~~-g-~-----v~nrl~~~~~~Ea~-~l~~~G~~~~~id~a~ 522 (539)
++.++.++++++.+| .++++++.. . + -.|.+++.+..... .....|++++++-+++
T Consensus 134 ~~~~~~~~~ll~~~G-~~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~~~~~Gl~~~~~~~~~ 197 (259)
T 2ahr_A 134 QELQARVRDLTDSFG-STFDISEKDFDTFTALAGSSPAYIYLFIEALAKAGVKNGIPKAKALEIV 197 (259)
T ss_dssp HHHHHHHHHHHHTTE-EEEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CEEEecHHHccHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999 577776421 0 0 11233333332222 2445699988877666
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=137.90 Aligned_cols=201 Identities=13% Similarity=0.127 Sum_probs=131.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc---cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ 384 (539)
++||+|||+|.||..+|..|+++|++|++||+++++++.+.+.- ....... . .....+..+++. +.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~~~~~-~---~~~~~~~~~~~~~~~~~ 71 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNG-------LIADFNG-E---EVVANLPIFSPEEIDHQ 71 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHC-------EEEEETT-E---EEEECCCEECGGGCCTT
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCC-------EEEEeCC-C---eeEecceeecchhhccc
Confidence 45899999999999999999999999999999998877654320 0000000 0 000112222222 23
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhhccCCCCcEE-EeccCCCCCCCC--------
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRII-GAHFFSPAHVMP-------- 454 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~i~~~~~~~~r~v-g~h~~~p~~~~~-------- 454 (539)
++++|+||+|+|.+ ....+++++.++++++++|++.++++.. ..+++.+.. .+++ |.++...+..++
T Consensus 72 ~~~~d~vi~~v~~~--~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~-~~vi~g~~~~~~~~~~p~~~~~~~~ 148 (316)
T 2ew2_A 72 NEQVDLIIALTKAQ--QLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPK-ENILVGITMWTAGLEGPGRVKLLGD 148 (316)
T ss_dssp SCCCSEEEECSCHH--HHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCG-GGEEEEEECCCCEEEETTEEEECSC
T ss_pred CCCCCEEEEEeccc--cHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCC-ccEEEEEeeeeeEEcCCCEEEEecC
Confidence 45999999999954 4678888999999999999888888776 456555543 3666 444433222221
Q ss_pred -eeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcc-----cchhh------------------------cchHHHHHH
Q 009256 455 -LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT-----GFAVN------------------------RAFFPYSQS 504 (539)
Q Consensus 455 -~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~-----g~v~n------------------------rl~~~~~~E 504 (539)
.+.+.....++++..+.+.++++.+|..+++.++.. +++.| .++...+.|
T Consensus 149 g~~~i~~~~~~~~~~~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E 228 (316)
T 2ew2_A 149 GEIELENIDPSGKKFALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISE 228 (316)
T ss_dssp CCEEEEESSGGGHHHHHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHH
T ss_pred CcEEEeecCCCccHHHHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHH
Confidence 122333345678999999999999999887776631 12222 233456679
Q ss_pred HHHHHHc-CCCH--HHHHHHH
Q 009256 505 ARLLVSL-GVDV--FRIDSAI 522 (539)
Q Consensus 505 a~~l~~~-G~~~--~~id~a~ 522 (539)
++.+++. |+++ +.+.+.+
T Consensus 229 ~~~la~~~G~~~~~~~~~~~~ 249 (316)
T 2ew2_A 229 FAAVAEKEAIYLDQAEVYTHI 249 (316)
T ss_dssp HHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHcCCCCChHHHHHHH
Confidence 9998876 9854 5665655
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.8e-15 Score=145.29 Aligned_cols=183 Identities=17% Similarity=0.165 Sum_probs=127.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++||+|||+|.||..++..|++.|++|++|| ++++.+.+.+ .| +...++. +.++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~ 57 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLS-----------LG-------------AVNVETARQVTE 57 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT-----------TT-------------CBCCSSHHHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH-----------cC-------------CcccCCHHHHHh
Confidence 3589999999999999999999999999999 9877665422 11 2334445 5578
Q ss_pred CcCEEEEcccCChhHHHHHHH--HHHHhCCCCeEEEecCCCCCh--HHHhhccCCCCcEEEeccCCCCC--------CCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFS--ELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAH--------VMP 454 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~--~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~~~r~vg~h~~~p~~--------~~~ 454 (539)
++|+||+|+|.+..++..+.. ++.+.++++++|++.+++.+. ..+...+... +.||++.|. .+.
T Consensus 58 ~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~----g~~~~~~p~~~~~~~a~~g~ 133 (295)
T 1yb4_A 58 FADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM----GADYLDAPVSGGEIGAREGT 133 (295)
T ss_dssp TCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTC
T ss_pred cCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc----CCeEEEccCCCCHHHHHcCC
Confidence 999999999976655443332 666778889988876666432 3454444321 233333332 123
Q ss_pred eeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-ccc----chhhcc---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-CTG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 455 ~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-~~g----~v~nrl---~~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
+..++++ +++.++.++++++.+|..++++++ ..+ ++.|.+ +...++|++.++++ |++++++...+
T Consensus 134 ~~~~~~~---~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~ 207 (295)
T 1yb4_A 134 LSIMVGG---EQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQAL 207 (295)
T ss_dssp EEEEEES---CHHHHHHHHHHHHHHEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eEEEECC---CHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445555 789999999999999999888865 333 334543 23567899998876 99999999888
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=140.79 Aligned_cols=200 Identities=13% Similarity=0.046 Sum_probs=132.6
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 304 KPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 304 ~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
|.+.++||+|||+|.||.++|..|+++|++|++||++++.++.+.+...+ ..+...-.+ ..++.+++++
T Consensus 25 m~~~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~--~~~l~g~~l--------~~~i~~t~d~~ 94 (356)
T 3k96_A 25 MEPFKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVN--NRYLPNYPF--------PETLKAYCDLK 94 (356)
T ss_dssp --CCCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSB--TTTBTTCCC--------CTTEEEESCHH
T ss_pred ccccCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCC--cccCCCCcc--------CCCeEEECCHH
Confidence 33345689999999999999999999999999999999988776442100 000000001 1345667777
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH------HHhhccCCCCcEE-EeccCCCC---CC
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN------IVGEKTSSQDRII-GAHFFSPA---HV 452 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~------~i~~~~~~~~r~v-g~h~~~p~---~~ 452 (539)
+++++||+||+++|. ...+.+++++.++++++++|++.++++... .+.+.++. ..+. -.-|.... ..
T Consensus 95 ea~~~aDvVilaVp~--~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~-~~~~vlsgP~~a~ev~~g 171 (356)
T 3k96_A 95 ASLEGVTDILIVVPS--FAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQ-VPMAVISGPSLATEVAAN 171 (356)
T ss_dssp HHHTTCCEEEECCCH--HHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCS-CCEEEEESSCCHHHHHTT
T ss_pred HHHhcCCEEEECCCH--HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCC-CCEEEEECccHHHHHHcC
Confidence 678999999999994 468889999999999999999888887764 23343431 1211 11111100 01
Q ss_pred CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc----------------------chhhc---chHHHHHHHHH
Q 009256 453 MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNR---AFFPYSQSARL 507 (539)
Q Consensus 453 ~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g----------------------~v~nr---l~~~~~~Ea~~ 507 (539)
.+...++.+ .+++..+.++++|...+..+++..|..| +-.|. ++...++|+.+
T Consensus 172 ~pt~~via~--~~~~~~~~v~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~ 249 (356)
T 3k96_A 172 LPTAVSLAS--NNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGR 249 (356)
T ss_dssp CCEEEEEEE--SCHHHHHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEec--CCHHHHHHHHHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Confidence 112122222 3788999999999999999888877443 22232 23345669999
Q ss_pred HHHc-CCCHHHH
Q 009256 508 LVSL-GVDVFRI 518 (539)
Q Consensus 508 l~~~-G~~~~~i 518 (539)
+++. |++++.+
T Consensus 250 l~~a~G~~~~t~ 261 (356)
T 3k96_A 250 LVSVFGGKQETL 261 (356)
T ss_dssp HHHHTTCCHHHH
T ss_pred HHHHhCCChHhh
Confidence 9977 9988864
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=146.55 Aligned_cols=203 Identities=12% Similarity=0.131 Sum_probs=134.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHH-----hhcccc
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNA-----LKMLKG 378 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~i~~ 378 (539)
+.++||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+.. ..+........ ..++.+
T Consensus 7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~----------~~i~e~gl~~~~~~~~~~~l~~ 76 (481)
T 2o3j_A 7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDK----------LPIYEPGLDEIVFAARGRNLFF 76 (481)
T ss_dssp CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSS----------CSSCCTTHHHHHHHHBTTTEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCC----------CCcCCCCHHHHHHHhhcCCEEE
Confidence 3457999999999999999999998 799999999999988764210 00000000000 124667
Q ss_pred cCCc-cCCCCcCEEEEcccCChh-------------HHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccCC--C-
Q 009256 379 VLDY-SEFKDVDMVIEAVIESVP-------------LKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSS--Q- 438 (539)
Q Consensus 379 ~~~~-~~~~~aDlVi~avpe~~~-------------~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~~--~- 438 (539)
++++ +++++||+||+|+|+... ....+++.+.++++++++|+..| ++++. .+...+.. .
T Consensus 77 t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~S-Tv~~gt~~~l~~~l~~~~~~ 155 (481)
T 2o3j_A 77 SSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKS-TVPVKAAESIGCILREAQKN 155 (481)
T ss_dssp ESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECS-CCCTTHHHHHHHHHHHHTC-
T ss_pred ECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECC-CCCCCHHHHHHHHHHHhhCc
Confidence 7776 778999999999986432 46677888999999999887543 44432 22222211 1
Q ss_pred ---Cc-EEEeccCCCCCCCCee---------ee-ecCCCC--cHHHHHHHHHHHHHcCc-eeEEEcC-----cccchhhc
Q 009256 439 ---DR-IIGAHFFSPAHVMPLL---------EI-VRTERT--SAQVILDLMTVGKIIKK-VPVVVGN-----CTGFAVNR 496 (539)
Q Consensus 439 ---~r-~vg~h~~~p~~~~~~v---------ei-~~~~~t--~~e~~~~~~~l~~~lg~-~~v~v~~-----~~g~v~nr 496 (539)
.. .+..+| ....+.. .+ +++... ++++++.++++++.++. .++++.+ ...++.|.
T Consensus 156 ~~~~d~~v~~~P---e~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~ 232 (481)
T 2o3j_A 156 NENLKFQVLSNP---EFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANA 232 (481)
T ss_dssp ---CCEEEEECC---CCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHH
T ss_pred CcCCceEEEeCc---ccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHH
Confidence 11 233333 2211111 23 344322 24788999999999996 7777754 33456676
Q ss_pred c---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 497 A---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 497 l---~~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
+ ..++++|+..+++. |++++++.+++
T Consensus 233 ~~a~~ia~~nE~~~la~~~Gid~~~v~~~~ 262 (481)
T 2o3j_A 233 FLAQRISSINSISAVCEATGAEISEVAHAV 262 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4 45788999999988 99999999998
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=134.21 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=114.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
|++|+|||+|.||.+++..|.+.|+ +|++||+++++++.+.+ .|... ..++++ +.
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-----------~g~~~-----------~~~~~~~~~ 58 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAKV 58 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGG
T ss_pred CcEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-----------CCCcc-----------cccCCHHHH
Confidence 4689999999999999999999999 99999999988766421 12110 123445 66
Q ss_pred CC-CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCC----------
Q 009256 385 FK-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH---------- 451 (539)
Q Consensus 385 ~~-~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~---------- 451 (539)
++ +||+||+|+|.+ ....++.++.++++++++|++.+++.. ...+.+.+.. ++++.||+..+.
T Consensus 59 ~~~~aDvVilavp~~--~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~--~~v~~~p~~~~~~~gp~~a~~~ 134 (281)
T 2g5c_A 59 EDFSPDFVMLSSPVR--TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK--RFVGGHPIAGTEKSGVEYSLDN 134 (281)
T ss_dssp GGTCCSEEEECSCHH--HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG--GEECEEEECCCSCCSGGGCCSS
T ss_pred hcCCCCEEEEcCCHH--HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc--cceeeccccCCccCChhhhhhH
Confidence 78 999999999954 455788888888999988776444332 2344444432 478878755321
Q ss_pred --CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 452 --~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.+..+.++++..++++.++.++++++.+|..++++++
T Consensus 135 l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 173 (281)
T 2g5c_A 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEYMSP 173 (281)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEECCH
T ss_pred HhCCCCEEEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 3445777887788999999999999999999888864
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=148.24 Aligned_cols=192 Identities=13% Similarity=0.041 Sum_probs=131.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC-
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE- 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~- 384 (539)
.+++|+|||+|.||.+||.+|+++||+|++||+++++++.+.+. +... ..+..+.++ +.
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~-----------g~~g--------~~i~~~~s~~e~v 63 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-----------EAKG--------TKVVGAQSLKEMV 63 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-----------TTTT--------SSCEECSSHHHHH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc-----------ccCC--------CceeccCCHHHHH
Confidence 35689999999999999999999999999999999988876431 1000 123333444 32
Q ss_pred --CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCee
Q 009256 385 --FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLL 456 (539)
Q Consensus 385 --~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~v 456 (539)
++++|+||++||.+..+ +.+++++.++++++.+|++.+++.+.. .+...+. ...++++......+ ..++ .
T Consensus 64 ~~l~~aDvVil~Vp~~~~v-~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~ 141 (484)
T 4gwg_A 64 SKLKKPRRIILLVKAGQAV-DDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-S 141 (484)
T ss_dssp HTBCSSCEEEECSCSSHHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-E
T ss_pred hhccCCCEEEEecCChHHH-HHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-e
Confidence 34699999999976554 456788999999999998877776543 2222221 22345554322211 1122 2
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCcee-------EEEcC-cccc----hhhcchH---HHHHHHHHHHHc--CCCHHHHH
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVP-------VVVGN-CTGF----AVNRAFF---PYSQSARLLVSL--GVDVFRID 519 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~-------v~v~~-~~g~----v~nrl~~---~~~~Ea~~l~~~--G~~~~~id 519 (539)
-++.+ ++++++.++++++.+|..+ +++++ ..|. +.|-+.+ ..++|++.+++. |++++++.
T Consensus 142 im~GG---~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~ 218 (484)
T 4gwg_A 142 LMPGG---NKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMA 218 (484)
T ss_dssp EEEEE---CGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred eecCC---CHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 23444 6899999999999999887 67765 2232 3354433 456799999976 89999988
Q ss_pred HHH
Q 009256 520 SAI 522 (539)
Q Consensus 520 ~a~ 522 (539)
+++
T Consensus 219 ~v~ 221 (484)
T 4gwg_A 219 QAF 221 (484)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-14 Score=148.36 Aligned_cols=190 Identities=14% Similarity=0.051 Sum_probs=132.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
-++|+|||+|.||.+||..|+++|++|++|||++++++.+.+... + ..+..++++ +.++
T Consensus 15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~v~ 74 (480)
T 2zyd_A 15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENP---------G-----------KKLVPYYTVKEFVE 74 (480)
T ss_dssp CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHST---------T-----------SCEEECSSHHHHHH
T ss_pred CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCC---------C-----------CCeEEeCCHHHHHh
Confidence 457999999999999999999999999999999998887644210 0 124445555 4455
Q ss_pred C---cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeee
Q 009256 387 D---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLE 457 (539)
Q Consensus 387 ~---aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~ve 457 (539)
+ ||+||.+||.+..+ +.+++++.+.++++++|++.+++.+.. .+.+.+. ...+++++.....+ ..++ ..
T Consensus 75 ~l~~aDvVil~Vp~~~~v-~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i 152 (480)
T 2zyd_A 75 SLETPRRILLMVKAGAGT-DAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SI 152 (480)
T ss_dssp TBCSSCEEEECSCSSSHH-HHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EE
T ss_pred CCCCCCEEEEECCCHHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eE
Confidence 4 99999999975554 466688999999999998877776543 3433332 23355555332222 1223 22
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCce-------eEEEcC-ccc----chhhcch---HHHHHHHHHHHHc--CCCHHHHHH
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDS 520 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~-------~v~v~~-~~g----~v~nrl~---~~~~~Ea~~l~~~--G~~~~~id~ 520 (539)
++.+ +++.++.++++++.+|.. ++++++ ..| ++.|.+. ...+.|++.+.+. |++++++..
T Consensus 153 ~~gg---~~~~~~~v~~ll~~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~ 229 (480)
T 2zyd_A 153 MPGG---QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQ 229 (480)
T ss_dssp EEES---CHHHHHHHHHHHHHHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred EecC---CHHHHHHHHHHHHHHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 3333 689999999999999987 566654 223 2346553 3566799999876 999999887
Q ss_pred HH
Q 009256 521 AI 522 (539)
Q Consensus 521 a~ 522 (539)
++
T Consensus 230 l~ 231 (480)
T 2zyd_A 230 TF 231 (480)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=151.15 Aligned_cols=190 Identities=13% Similarity=0.057 Sum_probs=132.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
.+|+|||+|.||.+||..|+++|++|++||+++++++.+.+.. .. + ..+..++++ +.+++
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~-~-----------~gi~~~~s~~e~v~~ 71 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANE-------AK-G-----------KSIIGATSIEDFISK 71 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTT-------TT-T-----------SSEECCSSHHHHHHT
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHccc-------cc-C-----------CCeEEeCCHHHHHhc
Confidence 4799999999999999999999999999999999887764310 00 0 124445555 44444
Q ss_pred ---cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCCC---CCCeeee
Q 009256 388 ---VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI 458 (539)
Q Consensus 388 ---aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~~---~~~~vei 458 (539)
||+||+|||.+..+. .+++++.+.++++.+|++.+++.+.. .+...+. ...+++++.....+. .++ ..+
T Consensus 72 l~~aDvVil~Vp~~~~v~-~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im 149 (497)
T 2p4q_A 72 LKRPRKVMLLVKAGAPVD-ALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLM 149 (497)
T ss_dssp SCSSCEEEECCCSSHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred CCCCCEEEEEcCChHHHH-HHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEE
Confidence 999999999765544 55688999999999998877666543 3433332 223455554333221 122 123
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCce------eEEEc-Ccccc----hhhcch---HHHHHHHHHHHHc--CCCHHHHHHHH
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKV------PVVVG-NCTGF----AVNRAF---FPYSQSARLLVSL--GVDVFRIDSAI 522 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~------~v~v~-~~~g~----v~nrl~---~~~~~Ea~~l~~~--G~~~~~id~a~ 522 (539)
+.+ +++.++.++++++.+|.. +++++ ...|. +.|.+. ...+.|++.+++. |++++++..++
T Consensus 150 ~gg---~~e~~~~v~~ll~~~g~~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~ 226 (497)
T 2p4q_A 150 PGG---SEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVF 226 (497)
T ss_dssp EEE---CGGGHHHHHHHHHHHSCEETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ecC---CHHHHHHHHHHHHHhcCccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 333 688999999999999988 66665 33443 346664 4567799999976 89999998887
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-13 Score=133.41 Aligned_cols=153 Identities=16% Similarity=0.155 Sum_probs=113.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
||+|||+|.||.+++..|.+.|++|++||+++++++.+.+ .|.. ...++++ +. .+|
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-----------~g~~-----------~~~~~~~~~~-~~~ 58 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLV-----------DEAGQDLSLL-QTA 58 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSC-----------SEEESCGGGG-TTC
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-----------CCCC-----------ccccCCHHHh-CCC
Confidence 7999999999999999999999999999999988766522 1210 0123445 44 899
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCC------------CCCee
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAH------------VMPLL 456 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~------------~~~~v 456 (539)
|+||+|+|. .....++.++.+.++++++|++. ++.....+........++++.||+..+. .+..+
T Consensus 59 D~vi~av~~--~~~~~~~~~l~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~ 135 (279)
T 2f1k_A 59 KIIFLCTPI--QLILPTLEKLIPHLSPTAIVTDV-ASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135 (279)
T ss_dssp SEEEECSCH--HHHHHHHHHHGGGSCTTCEEEEC-CSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred CEEEEECCH--HHHHHHHHHHHhhCCCCCEEEEC-CCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcE
Confidence 999999994 45678888998899999988765 4444433322211122788988765221 22356
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.++++..++++.++.++++++.+|..++++++
T Consensus 136 ~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~ 167 (279)
T 2f1k_A 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLCTP 167 (279)
T ss_dssp EEEECTTCCHHHHHHHHHHHGGGTCEEEECCH
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEEEEcCH
Confidence 67777778999999999999999999988865
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.2e-14 Score=146.71 Aligned_cols=199 Identities=15% Similarity=0.123 Sum_probs=130.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||+|||+|.||.++|..|+++|++|++||+++++++.+.+.. +..+...+.. ....+++.+++++ ++
T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~--------~~~~g~l~~t~~~~~~ 73 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQ--------GRQTGRLSGTTDFKKA 73 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHH--------HHHTTCEEEESCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHh--------hcccCceEEeCCHHHH
Confidence 799999999999999999999999999999999888764310 0000000000 0002346777777 56
Q ss_pred CCCcCEEEEcccCChh--------HHHHHHHHHHHhCCC---CeEEEecCCCCChHH----HhhccCC--CCc-----EE
Q 009256 385 FKDVDMVIEAVIESVP--------LKQKIFSELEKACPP---HCILATNTSTIDLNI----VGEKTSS--QDR-----II 442 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~--------~~~~~~~~l~~~~~~---~~ii~s~ts~~~~~~----i~~~~~~--~~r-----~v 442 (539)
+++||+||+|+|+... ....+++++.+++++ +++|+..+ +.++.. +...+.. ..+ .+
T Consensus 74 ~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~S-tv~~g~t~~~l~~~l~~~~g~~~~~~~~v 152 (436)
T 1mv8_A 74 VLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRS-TVLPGTVNNVVIPLIEDCSGKKAGVDFGV 152 (436)
T ss_dssp HHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECS-CCCTTHHHHTHHHHHHHHHSCCBTTTBEE
T ss_pred hccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeC-CcCCCchHHHHHHHHHHhcCcccCCcEEE
Confidence 8999999999987653 144567889888888 88877543 333322 2222211 111 11
Q ss_pred EeccCCCCCCCCee---------eeecCCCCcHHHHHHHHHHHHHcCceeEEEcC-----cccchhhcch---HHHHHHH
Q 009256 443 GAHFFSPAHVMPLL---------EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN-----CTGFAVNRAF---FPYSQSA 505 (539)
Q Consensus 443 g~h~~~p~~~~~~v---------ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~-----~~g~v~nrl~---~~~~~Ea 505 (539)
. ++|....+.. .++.+. ++++..+.+.++++.+|.. +++.+ ..+++.|.+. .++++|+
T Consensus 153 ~---~~Pe~~~~G~~~~~~~~~~~iv~G~-~~~~~~~~~~~l~~~~~~~-v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 153 G---TNPEFLRESTAIKDYDFPPMTVIGE-LDKQTGDLLEEIYRELDAP-IIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp E---ECCCCCCTTSHHHHHHSCSCEEEEE-SSHHHHHHHHHHHTTSSSC-EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E---ECcccccccccchhccCCCEEEEEc-CCHHHHHHHHHHHhccCCC-EEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2333322211 233332 3688999999999999984 44443 3356667654 5788999
Q ss_pred HHHHHc-CCCHHHHHHHH
Q 009256 506 RLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 506 ~~l~~~-G~~~~~id~a~ 522 (539)
..+++. |++++++++++
T Consensus 228 ~~l~~~~Gid~~~v~~~~ 245 (436)
T 1mv8_A 228 GNIAKAVGVDGREVMDVI 245 (436)
T ss_dssp HHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHh
Confidence 999977 99999999998
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-14 Score=138.78 Aligned_cols=185 Identities=15% Similarity=0.056 Sum_probs=125.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
|++|+|||+|.||..++..|++ |++|++||+++++.+.+.+. | +...+..+.+.+
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-----------g-------------~~~~~~~~~~~~ 55 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-----------F-------------GSEAVPLERVAE 55 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-----------H-------------CCEECCGGGGGG
T ss_pred CCeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-----------C-------------CcccCHHHHHhC
Confidence 3589999999999999999999 99999999999887765331 1 111222256789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCC-CCcEEEeccCCCCC---CCCeeeeecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGAHFFSPAH---VMPLLEIVRT 461 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~-~~r~vg~h~~~p~~---~~~~vei~~~ 461 (539)
+|+||+|+|.+..+. .+++++.+.++++++|++.++..+ ...+...+.. ...++..+.+.++. .+.+..++++
T Consensus 56 ~D~vi~~v~~~~~~~-~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~ 134 (289)
T 2cvz_A 56 ARVIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG 134 (289)
T ss_dssp CSEEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEES
T ss_pred CCEEEEeCCChHHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECC
Confidence 999999999665444 466788888888998885544332 2344444432 22344432111111 1222334443
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcCc-cc----chhhcc---hHHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGNC-TG----FAVNRA---FFPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~~-~g----~v~nrl---~~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
+++.++.+++++ .+|..++++++. .+ ++.|.+ +...+.|++.+++. |++++++...+
T Consensus 135 ---~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~ 200 (289)
T 2cvz_A 135 ---PEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVI 200 (289)
T ss_dssp ---CHHHHHHHGGGC-TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ---CHHHHHHHHHHH-hhcCCeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHH
Confidence 789999999999 999988888753 22 233553 34667799998876 99999998888
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-13 Score=135.48 Aligned_cols=138 Identities=14% Similarity=0.065 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
++++++..+...+.++.+++.. +-+|.|.-.++++ .|.+-.+. .........+ .++.++++|+|++|
T Consensus 139 G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~Ga~-~g~~ae~~----------g~~~~~a~~l-~al~~~~vPvIavV 205 (327)
T 2f9i_A 139 GMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTKGAY-PGKAAEER----------GQSESIATNL-IEMASLKVPVIAIV 205 (327)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSC-CCHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCC-cchhhhhh----------hhHHHHHHHH-HHHHhCCCCEEEEE
Confidence 7899999999999999988764 4455554322222 12211110 0112233455 56899999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
+|.|+|||+.++++||++||+++++|++ +.|.++++..+.+..+...|.++ +.++|++|+++|+||+|+|
T Consensus 206 ~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~GlVd~VV~ 275 (327)
T 2f9i_A 206 IGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLGIIDDVIS 275 (327)
T ss_dssp EEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTTSSSEEEC
T ss_pred ECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcCCceEEec
Confidence 9999999999999999999999999985 34555555555555555777777 7899999999999999998
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
.
T Consensus 276 e 276 (327)
T 2f9i_A 276 E 276 (327)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=139.06 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=133.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH--------HHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI--------EANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i--------~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
.|.+|+|||+|.+|.++|.+|++.||+|+++|+|+++++.+.+.. ...+.+.++ .+++++
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~------------~g~l~~ 87 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALS------------SGRLSF 87 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH------------TTCEEE
T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHH------------cCCeeE
Confidence 577999999999999999999999999999999999998875421 111212222 246788
Q ss_pred cCCc-cCCCCcCEEEEcccC--------ChhHHHHHHHHHHHhCC---CCeEEEecCCCCChHH---Hh-----hccCCC
Q 009256 379 VLDY-SEFKDVDMVIEAVIE--------SVPLKQKIFSELEKACP---PHCILATNTSTIDLNI---VG-----EKTSSQ 438 (539)
Q Consensus 379 ~~~~-~~~~~aDlVi~avpe--------~~~~~~~~~~~l~~~~~---~~~ii~s~ts~~~~~~---i~-----~~~~~~ 438 (539)
+++. +++++||++|+|||. |+.......+.|.++++ ++.+|+. .|++++.. +. +.....
T Consensus 88 tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~-eSTVppGtte~~~~~~l~~~~~~~ 166 (444)
T 3vtf_A 88 AESAEEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVV-KSTVPPGTTEGLVARAVAEEAGGV 166 (444)
T ss_dssp CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEE-CSCCCTTTTTTHHHHHHHTTTTTC
T ss_pred EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEE-eCCCCCchHHHHHHHHHHHhCCCC
Confidence 8888 678999999999974 44556677777877764 4556553 33444321 11 111111
Q ss_pred CcEEEecc------------CCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEc----CcccchhhcchH---
Q 009256 439 DRIIGAHF------------FSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG----NCTGFAVNRAFF--- 499 (539)
Q Consensus 439 ~r~vg~h~------------~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~----~~~g~v~nrl~~--- 499 (539)
.-.++..| .+|+++ ++++ +++++.+.+..+++.+....++.+ +...++.|.++.
T Consensus 167 ~f~v~~~PErl~eG~a~~d~~~~~ri-----ViG~--~~~~a~~~~~~ly~~~~~~~~~~~~~~AE~~Kl~eN~~ravnI 239 (444)
T 3vtf_A 167 KFSVASNPEFLREGSALEDFFKPDRI-----VIGA--GDERAASFLLDVYKAVDAPKLVMKPREAELVKYASNVFLALKI 239 (444)
T ss_dssp CCEEEECCCCCCTTSHHHHHHSCSCE-----EEEE--SSHHHHHHHHHHTTTSCSCEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CceeecCcccccCCccccccccCCcE-----EEcC--CCHHHHHHHHHHHhccCCCEEEechhHHHHHHHHHHHHHHHHH
Confidence 11222211 122221 3333 467888999999998876655543 333466675543
Q ss_pred HHHHHHHHHHHc-CCCHHHHHHHH-H--hCCC
Q 009256 500 PYSQSARLLVSL-GVDVFRIDSAI-R--SFGL 527 (539)
Q Consensus 500 ~~~~Ea~~l~~~-G~~~~~id~a~-~--~~g~ 527 (539)
+++||...+++. |++..+|-+++ . .+|+
T Consensus 240 a~~NEla~ice~~GiDv~eV~~a~~~d~rig~ 271 (444)
T 3vtf_A 240 SFANEVGLLAKRLGVDTYRVFEAVGLDKRIGR 271 (444)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHTSTTSCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhccCCCCCC
Confidence 889999999987 99999999888 3 4554
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.9e-14 Score=133.11 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=111.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
+.|+||+|||+|.||.++|..|+++|++|++ ||+++++++.+.+.. + .....++.+.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~----------g------------~~~~~~~~~~ 78 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRF----------G------------ASVKAVELKD 78 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHH----------T------------TTEEECCHHH
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHh----------C------------CCcccChHHH
Confidence 4467999999999999999999999999999 999999877764321 1 0111233366
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--------------hHHHhhccCCCCcEEEeccCCCC
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--------------LNIVGEKTSSQDRIIGAHFFSPA 450 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--------------~~~i~~~~~~~~r~vg~h~~~p~ 450 (539)
+.++|+||+|+| +....+++.++.+ + ++++|++.++++. ...+++.++ ..+++...++.++
T Consensus 79 ~~~aDvVilavp--~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~ 153 (220)
T 4huj_A 79 ALQADVVILAVP--YDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP-GAKVVKAFNTLPA 153 (220)
T ss_dssp HTTSSEEEEESC--GGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST-TCEEEEESCSSCH
T ss_pred HhcCCEEEEeCC--hHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC-CCCEEECCCCCCH
Confidence 789999999998 5556777777766 4 4778888887773 445666665 3466666554433
Q ss_pred CCC---------CeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 451 HVM---------PLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 451 ~~~---------~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
... +...++.+ .+++..+.++++++.+|+.++.+++
T Consensus 154 ~v~~~g~~~~~~~~~v~~~g--~~~~~~~~v~~l~~~~G~~~~~~G~ 198 (220)
T 4huj_A 154 AVLAADPDKGTGSRVLFLSG--NHSDANRQVAELISSLGFAPVDLGT 198 (220)
T ss_dssp HHHTSCSBCSSCEEEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred HHhhhCcccCCCCeeEEEeC--CCHHHHHHHHHHHHHhCCCeEeeCC
Confidence 221 12233333 3699999999999999999999876
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=132.80 Aligned_cols=179 Identities=11% Similarity=0.066 Sum_probs=123.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN----IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||+|.||.+++..|+++| ++|++||+++++ .| +...++. +
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------------~g-------------~~~~~~~~~ 54 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------------TT-------------LNYMSSNEE 54 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------------SS-------------SEECSCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------------Cc-------------eEEeCCHHH
Confidence 58999999999999999999999 799999999764 01 2233344 5
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCee-eeecCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLL-EIVRTE 462 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~v-ei~~~~ 462 (539)
.+++||+||+|+|.+ ....++.++.+++ ++.++++.++++....+...+....+++...+..|......+ .+++++
T Consensus 55 ~~~~~D~vi~~v~~~--~~~~v~~~l~~~l-~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p~~p~~~~~g~~~~~~~~ 131 (262)
T 2rcy_A 55 LARHCDIIVCAVKPD--IAGSVLNNIKPYL-SSKLLISICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNK 131 (262)
T ss_dssp HHHHCSEEEECSCTT--THHHHHHHSGGGC-TTCEEEECCSSCCHHHHHHHHCTTSEEEEEECCGGGGGTCEEEEEEECT
T ss_pred HHhcCCEEEEEeCHH--HHHHHHHHHHHhc-CCCEEEEECCCCCHHHHHHHhCCCCcEEEECCChHHHHcCCeEEEEeCC
Confidence 578899999999943 4677888888888 566777888888888777766543344433333333333333 355777
Q ss_pred CCcHHHHHHHHHHHHHcCceeEEEcCcc-cc------hhhcchHHHHHHHHH--HHHcCCCHHHHHHHH
Q 009256 463 RTSAQVILDLMTVGKIIKKVPVVVGNCT-GF------AVNRAFFPYSQSARL--LVSLGVDVFRIDSAI 522 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~~~v~v~~~~-g~------v~nrl~~~~~~Ea~~--l~~~G~~~~~id~a~ 522 (539)
.++++.++.++++++.+|. ++++++.. +. ..|.+++.+ .|++. ..+.|+++++..+.+
T Consensus 132 ~~~~~~~~~~~~ll~~~G~-~~~~~~~~~~~~~a~~~~~~~~~~~~-~~al~~~~~~~Gl~~~~~~~~~ 198 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI-IHEIKEKDMDIATAISGCGPAYVYLF-IESLIDAGVKNGLSRELSKNLV 198 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE-EEECCGGGHHHHHHHTTSHHHHHHHH-HHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCC-EEEeCHHHccHHHHHHccHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHH
Confidence 7899999999999999997 88886421 11 112233222 23332 345599887655554
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-13 Score=142.39 Aligned_cols=190 Identities=13% Similarity=0.033 Sum_probs=131.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
.++|+|||+|.||.++|..|+++|++|++||+++++++.+.+... + ..+..++++ +.++
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~---------~-----------~gi~~~~s~~e~v~ 64 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQ---------D-----------KNLVFTKTLEEFVG 64 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---------T-----------SCEEECSSHHHHHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCc---------C-----------CCeEEeCCHHHHHh
Confidence 358999999999999999999999999999999998877644210 0 124445555 4444
Q ss_pred ---CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCC-CCcEEEeccCCCCC---CCCeee
Q 009256 387 ---DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFSPAH---VMPLLE 457 (539)
Q Consensus 387 ---~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~-~~r~vg~h~~~p~~---~~~~ve 457 (539)
++|+||+|+|.+..+. .+++++.+.++++++|++.+++.+. ..+...+.. ..++++.....++. .++ .
T Consensus 65 ~l~~aDvVilavp~~~~v~-~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~--~ 141 (474)
T 2iz1_A 65 SLEKPRRIMLMVQAGAATD-ATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP--S 141 (474)
T ss_dssp TBCSSCEEEECCCTTHHHH-HHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC--C
T ss_pred hccCCCEEEEEccCchHHH-HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC--e
Confidence 4999999999765544 5668888999999988877766643 345444432 33455543322221 122 1
Q ss_pred eecCCCCcHHHHHHHHHHHHHcCce--------eEEEcC-ccc----chhhcch---HHHHHHHHHHHHc--CCCHHHHH
Q 009256 458 IVRTERTSAQVILDLMTVGKIIKKV--------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRID 519 (539)
Q Consensus 458 i~~~~~t~~e~~~~~~~l~~~lg~~--------~v~v~~-~~g----~v~nrl~---~~~~~Ea~~l~~~--G~~~~~id 519 (539)
++.+. +++.++.++++++.+|.. +.++++ ..| ++.|.+. ...+.|++.+++. |++++++.
T Consensus 142 i~~gg--~~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~ 219 (474)
T 2iz1_A 142 MMPGG--QKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQ 219 (474)
T ss_dssp EEEEE--CHHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred EEecC--CHHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 33332 789999999999999987 456654 233 3456553 3567799999875 89999998
Q ss_pred HHH
Q 009256 520 SAI 522 (539)
Q Consensus 520 ~a~ 522 (539)
+++
T Consensus 220 ~l~ 222 (474)
T 2iz1_A 220 AIF 222 (474)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-13 Score=133.99 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
+.++++..+...++++.++... +-+|.|.-.++++. |....+. .........+ .++.++++|+|++|
T Consensus 153 G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~Ga~~-g~~aE~~----------g~~~~~a~~l-~al~~~~vPvIavV 219 (339)
T 2f9y_A 153 GMPAPEGYRKALRLMQMAERFK-MPIITFIDTPGAYP-GVGAEER----------GQSEAIARNL-REMSRLGVPVVCTV 219 (339)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEESCSCC-SHHHHHT----------THHHHHHHHH-HHHHTCSSCEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCCCCcc-chHHHHH----------HHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 6899999999999999888764 44565543332221 2211110 0112233455 56899999999999
Q ss_pred cCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecC
Q 009256 106 EGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
+|.|.|||+.++++||++||.++++|++ +.|.++++.++.+..+...|.++ ..++|++|+++|+||+|+|
T Consensus 220 ~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~VV~ 289 (339)
T 2f9y_A 220 IGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSIIP 289 (339)
T ss_dssp EEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCCCC
T ss_pred eCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeEEec
Confidence 9999999999999999999999999996 45777878888887788888888 6799999999999999998
Q ss_pred c
Q 009256 186 S 186 (539)
Q Consensus 186 ~ 186 (539)
.
T Consensus 290 e 290 (339)
T 2f9y_A 290 E 290 (339)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-13 Score=129.02 Aligned_cols=173 Identities=13% Similarity=0.084 Sum_probs=115.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
||+|||+|.||.++|..|+++|++|++||+ +++.++.+.+ .| +. ++. +.++
T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~-----------~g-------------~~--~~~~~~~~ 55 (264)
T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART-----------VG-------------VT--ETSEEDVY 55 (264)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH-----------HT-------------CE--ECCHHHHH
T ss_pred eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHH-----------CC-------------Cc--CCHHHHHh
Confidence 799999999999999999999999999998 6666554422 11 12 333 5578
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh---HHHhhccCCCCcEEEeccCCCCC---CCCeeeeec
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL---NIVGEKTSSQDRIIGAHFFSPAH---VMPLLEIVR 460 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~---~~i~~~~~~~~r~vg~h~~~p~~---~~~~vei~~ 460 (539)
+||+||+|+|++..... +.++.+.+++ ++++. ++..+ ..+.+.+.... ++..+.+.+|. .+.. .+++
T Consensus 56 ~aDvvi~~v~~~~~~~~--~~~~~~~~~~--~vi~~-s~~~~~~~~~l~~~~~~~g-~~~~~v~~~~~~~~~g~~-~~~~ 128 (264)
T 1i36_A 56 SCPVVISAVTPGVALGA--ARRAGRHVRG--IYVDI-NNISPETVRMASSLIEKGG-FVDAAIMGSVRRKGADIR-IIAS 128 (264)
T ss_dssp TSSEEEECSCGGGHHHH--HHHHHTTCCS--EEEEC-SCCCHHHHHHHHHHCSSSE-EEEEEECSCHHHHGGGCE-EEEE
T ss_pred cCCEEEEECCCHHHHHH--HHHHHHhcCc--EEEEc-cCCCHHHHHHHHHHHhhCC-eeeeeeeCCccccccCCe-EEec
Confidence 99999999997665433 3567777766 55554 44433 35565555433 66666655543 2333 3445
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEEcCcccc-----hhhcch----HHHHHHHHHHHHc-CCCHHHHHHHH
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTGF-----AVNRAF----FPYSQSARLLVSL-GVDVFRIDSAI 522 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~-----v~nrl~----~~~~~Ea~~l~~~-G~~~~~id~a~ 522 (539)
++. + +.+++ ++.+|+.++++++.+|. ++|+.+ ...+.|++.+++. |++++ .-+.+
T Consensus 129 g~~---~--~~~~~-l~~~g~~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~ 193 (264)
T 1i36_A 129 GRD---A--EEFMK-LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEML 193 (264)
T ss_dssp STT---H--HHHHG-GGGGTCEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHH
T ss_pred CCc---H--HHhhh-HHHcCCeeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHH
Confidence 532 2 67888 99999999898764443 233332 3567799988866 99876 44555
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.1e-13 Score=140.37 Aligned_cols=193 Identities=12% Similarity=0.055 Sum_probs=130.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC--
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK-- 386 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-- 386 (539)
+|+|||+|.||..+|..|+++|++|++||+++++++.+.+.. |... . -..+..++++ +.++
T Consensus 3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~----------g~~~-~-----~~~i~~~~~~~e~v~~l 66 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN----------ASAP-F-----AGNLKAFETMEAFAASL 66 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT----------TTST-T-----GGGEEECSCHHHHHHHB
T ss_pred EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------CCCC-C-----CCCeEEECCHHHHHhcc
Confidence 799999999999999999999999999999999887764421 1000 0 0124455555 3344
Q ss_pred -CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCCC---CCCeeeee
Q 009256 387 -DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEIV 459 (539)
Q Consensus 387 -~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~~---~~~~vei~ 459 (539)
++|+||+|+|....+ +.+++++.+.++++++|++.+++.+.. .+.+.+. ....+++.....++. .++ ..++
T Consensus 67 ~~aDvVilaVp~~~~v-~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~ 144 (478)
T 1pgj_A 67 KKPRKALILVQAGAAT-DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFP 144 (478)
T ss_dssp CSSCEEEECCCCSHHH-HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEE
T ss_pred cCCCEEEEecCChHHH-HHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEec
Confidence 599999999976554 456688889999999888777666432 3444332 233455543322221 122 1223
Q ss_pred cCCCCcHHHHHHHHHHHHHcCce-------eEEEcC-ccc----chhhcch---HHHHHHHHHHHHc-CCCHHHHHHHHH
Q 009256 460 RTERTSAQVILDLMTVGKIIKKV-------PVVVGN-CTG----FAVNRAF---FPYSQSARLLVSL-GVDVFRIDSAIR 523 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~-------~v~v~~-~~g----~v~nrl~---~~~~~Ea~~l~~~-G~~~~~id~a~~ 523 (539)
.+ +++.++.++++++.+|.. ++++++ ..| ++.|.+. ...+.|++.+++. |++++++..++.
T Consensus 145 gg---~~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~ 221 (478)
T 1pgj_A 145 GG---TLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLE 221 (478)
T ss_dssp EE---CHHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cC---CHHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 688999999999999987 556654 223 2346543 3567799998877 899999888873
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=7.2e-13 Score=132.03 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=105.7
Q ss_pred CcceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 307 ~~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
.+++|+||| +|.||.++|..|++.|++|++||++++. +..+.+
T Consensus 20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------------------------------~~~~~~ 63 (298)
T 2pv7_A 20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------------------------------VAESIL 63 (298)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------------------------------GHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------------------------------CHHHHh
Confidence 356899999 9999999999999999999999998752 000346
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCC----CCCeeeee
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAH----VMPLLEIV 459 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~----~~~~vei~ 459 (539)
.+||+||+|+|.+. ...+++++.++++++++|++.++... ...+.... +.++++.||+.++. .+..+.++
T Consensus 64 ~~aDvVilavp~~~--~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~~~~v~~hP~~g~~~~~~~g~~~~l~ 139 (298)
T 2pv7_A 64 ANADVVIVSVPINL--TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH--TGAVLGLHPMFGADIASMAKQVVVRC 139 (298)
T ss_dssp TTCSEEEECSCGGG--HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--SSEEEEEEECSCTTCSCCTTCEEEEE
T ss_pred cCCCEEEEeCCHHH--HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--CCCEEeeCCCCCCCchhhcCCeEEEe
Confidence 78999999999554 77888999999999998776544322 23344333 46899999865543 23345555
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
++. +++.++.++++++.+|..++++.+
T Consensus 140 ~~~--~~~~~~~v~~l~~~~G~~~~~~~~ 166 (298)
T 2pv7_A 140 DGR--FPERYEWLLEQIQIWGAKIYQTNA 166 (298)
T ss_dssp EEE--CGGGTHHHHHHHHHTTCEEEECCH
T ss_pred cCC--CHHHHHHHHHHHHHcCCEEEECCH
Confidence 543 678899999999999999888853
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=8.5e-13 Score=140.09 Aligned_cols=191 Identities=13% Similarity=0.061 Sum_probs=129.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC--
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-- 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-- 385 (539)
++|+|||+|.||..+|..|+++|++|++||+++++++.+.+.. . .+ ..+..++++ +.+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~-~g-----------~gi~~~~~~~e~v~~ 63 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE-------A-KG-----------TKVLGAHSLEEMVSK 63 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT-------T-TT-----------SSCEECSSHHHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcc-------c-cC-----------CCeEEeCCHHHHHhh
Confidence 3799999999999999999999999999999999887764310 0 01 123445555 333
Q ss_pred -CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCCC---CCCeeee
Q 009256 386 -KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPAH---VMPLLEI 458 (539)
Q Consensus 386 -~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~~---~~~~vei 458 (539)
+++|+||+|+|....+. .++.++.++++++++|++.+++.+.. .+.+.+. ....++++....++. .++.+ +
T Consensus 64 l~~aDvVilaVp~~~~v~-~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i-~ 141 (482)
T 2pgd_A 64 LKKPRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSL-M 141 (482)
T ss_dssp BCSSCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEE-E
T ss_pred ccCCCEEEEeCCChHHHH-HHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeE-E
Confidence 58999999999765544 56678889999999888777766543 3433332 233455553322221 12212 3
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCcee-------EEEcC-ccc----chhhcch---HHHHHHHHHHHHc--CCCHHHHHHH
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVP-------VVVGN-CTG----FAVNRAF---FPYSQSARLLVSL--GVDVFRIDSA 521 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~-------v~v~~-~~g----~v~nrl~---~~~~~Ea~~l~~~--G~~~~~id~a 521 (539)
+.+ +++.++.++++++.+|..+ +++++ ..| ++.|.+. ...+.|++.+++. |++++++.++
T Consensus 142 ~gg---~~e~~~~v~~ll~~~g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~ 218 (482)
T 2pgd_A 142 PGG---NKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKA 218 (482)
T ss_dssp EEE---CTTTHHHHHHHHHHHSCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred eCC---CHHHHHHHHHHHHHhhhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHH
Confidence 333 5788999999999999876 45542 223 3456554 3567799988864 8999999888
Q ss_pred HH
Q 009256 522 IR 523 (539)
Q Consensus 522 ~~ 523 (539)
+.
T Consensus 219 ~~ 220 (482)
T 2pgd_A 219 FE 220 (482)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-12 Score=132.27 Aligned_cols=181 Identities=16% Similarity=0.103 Sum_probs=120.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||.++|..|.+.|++|+++|++++. .+.+. +.| +... +. +.++
T Consensus 17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~-----------~~G-------------~~~~-~~~e~~~ 71 (338)
T 1np3_A 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------AHG-------------LKVA-DVKTAVA 71 (338)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------HTT-------------CEEE-CHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHH-----------HCC-------------CEEc-cHHHHHh
Confidence 57999999999999999999999999999999765 33221 112 2222 44 5678
Q ss_pred CcCEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCCCCChHHHhhcc-CCCCcEEEeccCCCCCC---------CCe
Q 009256 387 DVDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDLNIVGEKT-SSQDRIIGAHFFSPAHV---------MPL 455 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts~~~~~~i~~~~-~~~~r~vg~h~~~p~~~---------~~~ 455 (539)
+||+||+|+|.+. ...++. ++.++++++++|++. +++.. .+.... .....+++.||..|.+. +..
T Consensus 72 ~aDvVilavp~~~--~~~v~~~~i~~~l~~~~ivi~~-~gv~~-~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~ 147 (338)
T 1np3_A 72 AADVVMILTPDEF--QGRLYKEEIEPNLKKGATLAFA-HGFSI-HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIP 147 (338)
T ss_dssp TCSEEEECSCHHH--HHHHHHHHTGGGCCTTCEEEES-CCHHH-HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCC
T ss_pred cCCEEEEeCCcHH--HHHHHHHHHHhhCCCCCEEEEc-CCchh-HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCe
Confidence 9999999999544 467887 888899999988865 44444 333322 12235899999766531 233
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCc-e--eEEEc----C-cccchhhcchH----HHHHHHH-HHHHcCCCHHHH
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKK-V--PVVVG----N-CTGFAVNRAFF----PYSQSAR-LLVSLGVDVFRI 518 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~-~--~v~v~----~-~~g~v~nrl~~----~~~~Ea~-~l~~~G~~~~~i 518 (539)
+-++++..++++..+.+..+++.+|. . ++.+. + ...+..+..++ .++..++ .+++.|+++++-
T Consensus 148 ~ii~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 148 DLIAIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 33566667788999999999999998 4 55552 1 22333332322 2222222 335679887643
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=122.08 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=112.2
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
||+||| +|.||..++..|+++|++|+++|+++++.+.+.+.+.. .+.. ..+.. ++. +.+++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~------------~~~~~-~~~~~~~~~ 64 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR----IAGD------------ASITG-MKNEDAAEA 64 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH----HHSS------------CCEEE-EEHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----cccc------------CCCCh-hhHHHHHhc
Confidence 799999 99999999999999999999999999887766443211 1110 11221 233 55788
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--------------hHHHhhccCCCCcEEEeccCCCC---
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--------------LNIVGEKTSSQDRIIGAHFFSPA--- 450 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--------------~~~i~~~~~~~~r~vg~h~~~p~--- 450 (539)
+|+||.++|.+ ....++.++.+.++ ++++++.++++. ..++++.+.. .+++..++..+.
T Consensus 65 ~D~Vi~~~~~~--~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~v~~~~~~~~~~~ 140 (212)
T 1jay_A 65 CDIAVLTIPWE--HAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES-EKVVSALHTIPAARF 140 (212)
T ss_dssp CSEEEECSCHH--HHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC-SCEEECCTTCCHHHH
T ss_pred CCEEEEeCChh--hHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC-CeEEEEccchHHHHh
Confidence 99999999843 35577777777664 888888888766 4667666653 577776543322
Q ss_pred ----CCCCeeeeecCCCCcHHHHHHHHHHHHHc-CceeEEEcC
Q 009256 451 ----HVMPLLEIVRTERTSAQVILDLMTVGKII-KKVPVVVGN 488 (539)
Q Consensus 451 ----~~~~~vei~~~~~t~~e~~~~~~~l~~~l-g~~~v~v~~ 488 (539)
....+..+++++ +++.++.++++++.+ |+.++++++
T Consensus 141 ~~~~~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~~~~ 181 (212)
T 1jay_A 141 ANLDEKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLDAGP 181 (212)
T ss_dssp HCTTCCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEEEES
T ss_pred hCcCCCCCccEEEECC--cHHHHHHHHHHHHHcCCCCceeccc
Confidence 112345566664 689999999999999 999999976
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=125.76 Aligned_cols=165 Identities=12% Similarity=0.076 Sum_probs=101.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH--HHHHHHHHHHH-HHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY--LLKGIKTIEAN-VRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~--~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.+||+|||+|.||.+||..|+++|++|++||+++++ .+.......+. +..+.+. .+.....+..+.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~e~ 87 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPE-----------HPHVHLAAFADV 87 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGG-----------STTCEEEEHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhh-----------cCceeccCHHHH
Confidence 468999999999999999999999999999999886 11110000000 0011111 011222222266
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHH-HHhCCCCeEEEecCCCC----------------Ch-HHHhhccCCCCcEE-Eec
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSEL-EKACPPHCILATNTSTI----------------DL-NIVGEKTSSQDRII-GAH 445 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l-~~~~~~~~ii~s~ts~~----------------~~-~~i~~~~~~~~r~v-g~h 445 (539)
+++||+||+|+|.+.. ..++.++ .+.+ ++++|++.+.++ .. ..+++.++. .+++ +++
T Consensus 88 ~~~aDvVilavp~~~~--~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~-~~vv~~~~ 163 (245)
T 3dtt_A 88 AAGAELVVNATEGASS--IAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE-AKVVKTLN 163 (245)
T ss_dssp HHHCSEEEECSCGGGH--HHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT-SEEEECST
T ss_pred HhcCCEEEEccCcHHH--HHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC-CeEEEeec
Confidence 7899999999996543 3556667 6666 777887776322 22 244554543 4554 344
Q ss_pred cCCCCC--------CCCeeeeecCCCCcHHHHHHHHHHHHHcCce-eEEEcCc
Q 009256 446 FFSPAH--------VMPLLEIVRTERTSAQVILDLMTVGKIIKKV-PVVVGNC 489 (539)
Q Consensus 446 ~~~p~~--------~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~-~v~v~~~ 489 (539)
+.+.|. .+++..++.++ ++++++.++++++.+|.. ++++++.
T Consensus 164 ~~~a~v~~~~~~a~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~~~~G~~ 214 (245)
T 3dtt_A 164 TMNASLMVDPGRAAGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDVIDLGDI 214 (245)
T ss_dssp TSCHHHHHCGGGTGGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCEEEEESG
T ss_pred ccCHHHhcCccccCCCCeeEEEECC--CHHHHHHHHHHHHHcCCCceeccCcH
Confidence 433221 22333344442 789999999999999976 4778763
|
| >3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics, APC7539, PSI-2, protein structure initiative; 2.46A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-13 Score=113.31 Aligned_cols=62 Identities=23% Similarity=0.249 Sum_probs=46.6
Q ss_pred HcCceeE-EEcCcccchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 478 IIKKVPV-VVGNCTGFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 478 ~lg~~~v-~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
.++|.+| .++|.+||++||++.++++||..++++|+ +++|||.++ .++|||+|||+++|.++
T Consensus 3 ~~~K~~v~~~~d~~gfi~nRll~~~~~eA~~ll~eGva~~~dID~a~~~g~G~p~GPf~~~D~~G 67 (110)
T 3ctv_A 3 SKGRPQIDSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIKLGLNRPFGPFELAKQFG 67 (110)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCSSCHHHHHHHHC
T ss_pred CCCCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCCccHHHHHHHHH
Confidence 3678899 88999999999999999999999999997 999999999 69999999999999753
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=132.81 Aligned_cols=197 Identities=14% Similarity=0.046 Sum_probs=120.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|+||+|||+|.||.++|..|+++|++|++||+++++++.+.+... ......... ....+..+++. +.++
T Consensus 15 M~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~-------~~~~~~~~~---~~~~~~~~~~~~~~~~ 84 (366)
T 1evy_A 15 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRE-------NVLFLKGVQ---LASNITFTSDVEKAYN 84 (366)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTB-------CTTTSTTCB---CCTTEEEESCHHHHHT
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCc-------ccccccccc---cccceeeeCCHHHHHc
Confidence 458999999999999999999999999999999988776643210 000000000 00124445565 5578
Q ss_pred CcCEEEEcccCChhHHHHHHHH----HHHhCCC-CeEEEecCCCCChHH---HhhccCC--CC-c-EEEeccCCCCC--C
Q 009256 387 DVDMVIEAVIESVPLKQKIFSE----LEKACPP-HCILATNTSTIDLNI---VGEKTSS--QD-R-IIGAHFFSPAH--V 452 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~----l~~~~~~-~~ii~s~ts~~~~~~---i~~~~~~--~~-r-~vg~h~~~p~~--~ 452 (539)
+||+||+|+|+ .....++.+ +.+++++ +++|++.++++.+.. +...+.. +. . .+...|..+.. .
T Consensus 85 ~aDvVilav~~--~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~ 162 (366)
T 1evy_A 85 GAEIILFVIPT--QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVAT 162 (366)
T ss_dssp TCSSEEECCCH--HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHT
T ss_pred CCCEEEECCCh--HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHh
Confidence 99999999994 556778887 8888887 888888776765532 1111111 11 1 11111111110 1
Q ss_pred C-CeeeeecCCCCcHHHHHHHHHHHHHc--CceeEEEcCccc----------------------chhhc---chHHHHHH
Q 009256 453 M-PLLEIVRTERTSAQVILDLMTVGKII--KKVPVVVGNCTG----------------------FAVNR---AFFPYSQS 504 (539)
Q Consensus 453 ~-~~vei~~~~~t~~e~~~~~~~l~~~l--g~~~v~v~~~~g----------------------~v~nr---l~~~~~~E 504 (539)
+ +...++.+ .+++.++.+++++... |..+++..|..+ +..|. +....+.|
T Consensus 163 g~~~~~~~~~--~~~~~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E 240 (366)
T 1evy_A 163 GVFTCVSIAS--ADINVARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLE 240 (366)
T ss_dssp TCCEEEEEEC--SSHHHHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCceEEEEec--CCHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHH
Confidence 1 11112222 3678899999999999 877777666432 11221 23356679
Q ss_pred HHHHHHc-CCCHHHH
Q 009256 505 ARLLVSL-GVDVFRI 518 (539)
Q Consensus 505 a~~l~~~-G~~~~~i 518 (539)
++.+++. |++++++
T Consensus 241 ~~~la~a~Gi~~~~~ 255 (366)
T 1evy_A 241 IRDLTAALGGDGSAV 255 (366)
T ss_dssp HHHHHHHTTCCCTTT
T ss_pred HHHHHHHhCCCCccc
Confidence 9999976 9866543
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=128.40 Aligned_cols=200 Identities=20% Similarity=0.233 Sum_probs=123.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHh----hcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNAL----KMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~-~~ 384 (539)
||+|||+|.||.++|..|++ |++|++||+++++++.+.+.. ..+........+ .++.+++++ ++
T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~----------~~i~e~~l~~~~~~~~~~l~~t~~~~~~ 70 (402)
T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGL----------SPIQDEYIEYYLKSKQLSIKATLDSKAA 70 (402)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTC----------CSSCCHHHHHHHHHSCCCEEEESCHHHH
T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCC----------CCcCCCCHHHHHHhccCcEEEeCCHHHH
Confidence 79999999999999999999 999999999999888764321 001111111111 245566666 66
Q ss_pred CCCcCEEEEcccCCh---------hHHHHHHHHHHHhCCCCeEEEe-cCCCCCh-HHHhhccCCCCcEEEec-cCCCCCC
Q 009256 385 FKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILAT-NTSTIDL-NIVGEKTSSQDRIIGAH-FFSPAHV 452 (539)
Q Consensus 385 ~~~aDlVi~avpe~~---------~~~~~~~~~l~~~~~~~~ii~s-~ts~~~~-~~i~~~~~~~~r~vg~h-~~~p~~~ 452 (539)
+++||+||+|+|... .....+++.+.+ ++++++|+. +|.+... ..+...+... .++... +..+...
T Consensus 71 ~~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~-~v~~~Pe~~~~G~a 148 (402)
T 1dlj_A 71 YKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD-RIIFSPEFLRESKA 148 (402)
T ss_dssp HHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS-CEEECCCCCCTTST
T ss_pred hcCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC-eEEECCccccCcch
Confidence 889999999999764 146677788888 788888775 3333332 2444444322 232211 1111110
Q ss_pred C-----CeeeeecCCCC----cHHHHHHHHHHHHHcC-c-e-eEEEcCcc-----cchhhcch---HHHHHHHHHHHHc-
Q 009256 453 M-----PLLEIVRTERT----SAQVILDLMTVGKIIK-K-V-PVVVGNCT-----GFAVNRAF---FPYSQSARLLVSL- 511 (539)
Q Consensus 453 ~-----~~vei~~~~~t----~~e~~~~~~~l~~~lg-~-~-~v~v~~~~-----g~v~nrl~---~~~~~Ea~~l~~~- 511 (539)
. +--.++++... ..+..+.+.+++..-+ . . ++++++.. .++.|-++ .+++||+..+++.
T Consensus 149 ~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~ 228 (402)
T 1dlj_A 149 LYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESR 228 (402)
T ss_dssp THHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00013344321 1255677788887533 2 2 56665522 34556543 3678999999977
Q ss_pred CCCHHHHHHHH
Q 009256 512 GVDVFRIDSAI 522 (539)
Q Consensus 512 G~~~~~id~a~ 522 (539)
|+++.++.+++
T Consensus 229 Gid~~~v~~~~ 239 (402)
T 1dlj_A 229 KLNSHMIIQGI 239 (402)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHh
Confidence 99999999988
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-12 Score=118.80 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=100.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
.++|+|||+|.||.++|..|+++|++|++||++++ .+++
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------------------------------~~~~ 57 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------------------------------ATTL 57 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------------------------------CSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------------------------------Hhcc
Confidence 45899999999999999999999999999998864 3578
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC---------------hHHHhhccCCCCcEEE-eccCCCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID---------------LNIVGEKTSSQDRIIG-AHFFSPAH 451 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~---------------~~~i~~~~~~~~r~vg-~h~~~p~~ 451 (539)
||+||+|+| ....+.+++++.+.++ ++++++.+++++ ...+++.++ ..+++. .|+...|.
T Consensus 58 aD~vi~av~--~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~-~~~vv~~~~~~~~p~ 133 (209)
T 2raf_A 58 GEIVIMAVP--YPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP-DSQVLKAFNTTFAAT 133 (209)
T ss_dssp CSEEEECSC--HHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT-TSEEEECSTTSCHHH
T ss_pred CCEEEEcCC--cHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC-CCcEEEeeecccHhh
Confidence 999999999 4456678888888777 888888877665 234555554 356777 55543221
Q ss_pred C--------CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 452 V--------MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 452 ~--------~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
. .+...++.+ .+++..+.++++++.+|..++++++
T Consensus 134 ~~~~~~~g~~~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~~~ 176 (209)
T 2raf_A 134 LQSGQVNGKEPTTVLVAG--NDDSAKQRFTRALADSPLEVKDAGK 176 (209)
T ss_dssp HHHSEETTTEECEEEEEE--SCHHHHHHHHHHTTTSSCEEEEEES
T ss_pred ccccccCCCCCceeEEcC--CCHHHHHHHHHHHHHcCCceEeCCC
Confidence 1 122223333 3678999999999999999998877
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.9e-12 Score=120.46 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=100.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.+++|+|||+|.||..++..|.+.|++|+++|+++++.+.+.+ .+ +... +. +.+
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~-----------~g-------------~~~~-~~~~~~ 81 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFP-----------SA-------------AQVT-FQEEAV 81 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSB-----------TT-------------SEEE-EHHHHT
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cC-------------Ccee-cHHHHH
Confidence 4568999999999999999999999999999999887665411 11 2222 33 567
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh----------hccCCCCcEEEeccCCCC-----
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG----------EKTSSQDRIIGAHFFSPA----- 450 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~----------~~~~~~~r~vg~h~~~p~----- 450 (539)
+++|+||+++|.+. .+.+++ +.+.. +++++++.+++.+...+. ..++ ..++++.. ++.
T Consensus 82 ~~~DvVi~av~~~~--~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~--n~~~~~~~ 154 (215)
T 2vns_A 82 SSPEVIFVAVFREH--YSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAF--NVISAWTL 154 (215)
T ss_dssp TSCSEEEECSCGGG--SGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEEC--TTBCHHHH
T ss_pred hCCCEEEECCChHH--HHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEecc--ccccHhHh
Confidence 89999999999532 344444 55555 688888888888765442 3333 23454421 211
Q ss_pred ----CCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 451 ----HVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 451 ----~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
..++...++.+ .+++.++.++++++.+|..++++++
T Consensus 155 ~~~~~~g~~~~~~~g--~~~~~~~~v~~ll~~~G~~~~~~g~ 194 (215)
T 2vns_A 155 QAGPRDGNRQVPICG--DQPEAKRAVSEMALAMGFMPVDMGS 194 (215)
T ss_dssp HTCSCSSCCEEEEEE--SCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred cccccCCceeEEEec--CCHHHHHHHHHHHHHcCCceEeecc
Confidence 11111112222 2789999999999999999999976
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-12 Score=129.80 Aligned_cols=196 Identities=10% Similarity=-0.045 Sum_probs=122.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-------CeEEEEeCChH-----HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALKM 375 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 375 (539)
++||+|||+|.||.+||..|+++| ++|++||++++ .++.+.+.. ......... ....+
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~-------~~~~~~~~~---~~~~~ 90 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKH-------ENTKYLKGV---PLPHN 90 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHC-------BCTTTSTTC---BCCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcC-------cccccCCcc---cCcCC
Confidence 468999999999999999999999 99999999987 555543210 000000000 00023
Q ss_pred ccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHH----hCCCCeEEEecCCCCChH-----HH----hhccCCCCcE
Q 009256 376 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEK----ACPPHCILATNTSTIDLN-----IV----GEKTSSQDRI 441 (539)
Q Consensus 376 i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~----~~~~~~ii~s~ts~~~~~-----~i----~~~~~~~~r~ 441 (539)
+..+++. +++++||+||+|+|+ ...+.++.++.+ .+++++++++.++++.+. .+ ...+..+ ..
T Consensus 91 i~~~~~~~ea~~~aDvVilav~~--~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~ 167 (375)
T 1yj8_A 91 IVAHSDLASVINDADLLIFIVPC--QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIP-CS 167 (375)
T ss_dssp EEEESSTHHHHTTCSEEEECCCH--HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSC-EE
T ss_pred eEEECCHHHHHcCCCEEEEcCCH--HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCC-EE
Confidence 4556666 567899999999994 567888889988 888999999888776551 11 2222211 11
Q ss_pred EEeccCCCCC--C-CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc----------------------chhhc
Q 009256 442 IGAHFFSPAH--V-MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVNR 496 (539)
Q Consensus 442 vg~h~~~p~~--~-~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g----------------------~v~nr 496 (539)
+-..|..+.. . .+...++.+ .+++..+.++++|+..|..+++..|..| +..|.
T Consensus 168 v~~gp~~a~~v~~g~~~~~~~~~--~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~ 245 (375)
T 1yj8_A 168 ALSGANIAMDVAMENFSEATIGG--NDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNS 245 (375)
T ss_dssp EEECSCCHHHHHTTCCEEEEEEC--SCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred EEeCCchHHHHHhCCCeEEEEec--CCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhH
Confidence 1111211110 0 111112222 3678899999999999998888877533 11232
Q ss_pred c---hHHHHHHHHHHHHc-C--CCHHHH
Q 009256 497 A---FFPYSQSARLLVSL-G--VDVFRI 518 (539)
Q Consensus 497 l---~~~~~~Ea~~l~~~-G--~~~~~i 518 (539)
. ....+.|+..+++. | ++++.+
T Consensus 246 ~~a~~~~~~~E~~~la~a~G~G~~~~~~ 273 (375)
T 1yj8_A 246 KSAIIRNGINEMILFGKVFFQKFNENIL 273 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcchh
Confidence 2 33456699888865 4 776554
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.6e-12 Score=128.16 Aligned_cols=197 Identities=16% Similarity=0.031 Sum_probs=123.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-------CeEEEEeCChH-----HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE-----YLLKGIKTIEANVRGLVTRGKLTQDKANNALKM 375 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 375 (539)
++||+|||+|.||.++|..|+++| ++|++||++++ ..+.+.+.... ..+. .+. . ...+
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~--~~~~-~~~-~------~~~~ 77 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHEN--VKYL-PGH-K------LPPN 77 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCC--TTTS-TTC-C------CCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcc--cccC-Ccc-c------CccC
Confidence 458999999999999999999999 99999999988 66554321000 0000 000 0 0023
Q ss_pred ccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--------HH-HhhccCCCCcEEEec
Q 009256 376 LKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NI-VGEKTSSQDRIIGAH 445 (539)
Q Consensus 376 i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--------~~-i~~~~~~~~r~vg~h 445 (539)
+..+++. +++++||+||+|+|+ .....+++++.++++++++|++.++++.. .+ +...+..+ ..+-..
T Consensus 78 ~~~~~~~~~~~~~aD~Vilav~~--~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~-~~v~~g 154 (354)
T 1x0v_A 78 VVAVPDVVQAAEDADILIFVVPH--QFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIP-MSVLMG 154 (354)
T ss_dssp EEEESSHHHHHTTCSEEEECCCG--GGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCC-EEEEEC
T ss_pred eEEEcCHHHHHcCCCEEEEeCCH--HHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCC-EEEEEC
Confidence 4455566 567899999999995 45778889999999999999988887653 11 12222211 111112
Q ss_pred cCCCCC--CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc----------------------chhh---cch
Q 009256 446 FFSPAH--VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVN---RAF 498 (539)
Q Consensus 446 ~~~p~~--~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g----------------------~v~n---rl~ 498 (539)
|..+.. .+....++.+ ..+++..+.++++++..|..+++..|..+ +..| .+.
T Consensus 155 p~~a~~v~~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~ 233 (354)
T 1x0v_A 155 ANIASEVADEKFCETTIG-CKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVI 233 (354)
T ss_dssp SCCHHHHHTTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCcHHHHHhcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHH
Confidence 221111 1111112212 23678899999999999988888776432 1123 123
Q ss_pred HHHHHHHHHHHHc-CC---CHHHH
Q 009256 499 FPYSQSARLLVSL-GV---DVFRI 518 (539)
Q Consensus 499 ~~~~~Ea~~l~~~-G~---~~~~i 518 (539)
...++|+..+++. |+ +++++
T Consensus 234 ~~~~~E~~~la~a~G~~~~~~~~~ 257 (354)
T 1x0v_A 234 RLGLMEMIAFAKLFCSGPVSSATF 257 (354)
T ss_dssp HHHHHHHHHHHHHHSSSCCCGGGG
T ss_pred HHHHHHHHHHHHHhcCCCCCcccc
Confidence 4566799999977 88 77653
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=122.88 Aligned_cols=202 Identities=10% Similarity=-0.008 Sum_probs=124.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC-----C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHH-HHHhhccccc
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILN-----N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NNALKMLKGV 379 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~-----G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ 379 (539)
.++||+|||+|.||..+|..|+++ | ++|++||+ +++++.+.+. .|....... ......+..+
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~ 75 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAA----------GGLRVVTPSRDFLARPTCVT 75 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHH----------TSEEEECSSCEEEECCSEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhc----------CCeEEEeCCCCeEEecceEe
Confidence 335899999999999999999999 9 99999999 7766655320 110000000 0000012223
Q ss_pred CCccCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhhccCCCCcEEEeccCCCCCC------
Q 009256 380 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAHFFSPAHV------ 452 (539)
Q Consensus 380 ~~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~i~~~~~~~~r~vg~h~~~p~~~------ 452 (539)
++.+.+.++|+||.|+|... ...+++++.+.++++++|++.+.++.. ..+.+.++...-+.|+.+...+..
T Consensus 76 ~~~~~~~~~D~vil~vk~~~--~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~ 153 (317)
T 2qyt_A 76 DNPAEVGTVDYILFCTKDYD--MERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLIT 153 (317)
T ss_dssp SCHHHHCCEEEEEECCSSSC--HHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEE
T ss_pred cCccccCCCCEEEEecCccc--HHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEE
Confidence 44455789999999999665 467788898888888888887778776 355555543222223332221111
Q ss_pred --CCeeee-ecC--CCCcHHHHHHHHHHHHHcCceeEEEcCccc-----chhhc----------------------chHH
Q 009256 453 --MPLLEI-VRT--ERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVNR----------------------AFFP 500 (539)
Q Consensus 453 --~~~vei-~~~--~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g-----~v~nr----------------------l~~~ 500 (539)
.....+ +.. +..+++.+ .+.++++..|..+++.++..+ ++.|- +...
T Consensus 154 ~~~~g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~ 232 (317)
T 2qyt_A 154 LEADRELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLS 232 (317)
T ss_dssp EEEEEEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHH
T ss_pred EcCCCceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 111112 322 33456777 899999999988777766322 23332 3335
Q ss_pred HHHHHHHHHHc-CCCH--HHHHHHH
Q 009256 501 YSQSARLLVSL-GVDV--FRIDSAI 522 (539)
Q Consensus 501 ~~~Ea~~l~~~-G~~~--~~id~a~ 522 (539)
.+.|+..+++. |+++ +.+.+.+
T Consensus 233 ~~~E~~~v~~a~G~~~~~~~~~~~~ 257 (317)
T 2qyt_A 233 LLEEVAELFRAKYGQVPDDVVQQLL 257 (317)
T ss_dssp HHHHHHHHHHHHTSCCCSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHH
Confidence 67799999866 9854 3555555
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5e-12 Score=125.12 Aligned_cols=186 Identities=11% Similarity=-0.021 Sum_probs=119.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
||+|||+|.||.++|..|+++|++|++||+++++++.+ ...+. .... ....+. .++.+.++++|
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l-----------~~~~~-~~~~---~~~~~~-~~~~~~~~~~d 65 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-----------NLVET-DGSI---FNESLT-ANDPDFLATSD 65 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-----------EEECT-TSCE---EEEEEE-ESCHHHHHTCS
T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeE-----------EEEcC-CCce---eeeeee-ecCccccCCCC
Confidence 79999999999999999999999999999998654321 11110 0000 000111 22335678899
Q ss_pred EEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccCCCCcEE-EeccC----CCCC-----CCCeeee
Q 009256 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRII-GAHFF----SPAH-----VMPLLEI 458 (539)
Q Consensus 390 lVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~~~~r~v-g~h~~----~p~~-----~~~~vei 458 (539)
+||.|+|.+. ...+++++.++++++++|++.++++... .+.+.+. . ++ |.++. ..|. .+. +.+
T Consensus 66 ~vi~~v~~~~--~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~--~-~~~g~~~~~~~~~~p~~~~~~~g~-~~i 139 (291)
T 1ks9_A 66 LLLVTLKAWQ--VSDAVKSLASTLPVTTPILLIHNGMGTIEELQNIQQ--P-LLMGTTTHAARRDGNVIIHVANGI-THI 139 (291)
T ss_dssp EEEECSCGGG--HHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTTCCS--C-EEEEEECCEEEEETTEEEEEECCC-EEE
T ss_pred EEEEEecHHh--HHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHHhcC--C-eEEEEEeEccEEcCCEEEEecccc-eEE
Confidence 9999999664 5778889999999898888877777553 4444432 2 43 43332 1111 011 112
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeEEEcCcccchh-----h---------------------cchHHHHHHHHHHHHc-
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAV-----N---------------------RAFFPYSQSARLLVSL- 511 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~-----n---------------------rl~~~~~~Ea~~l~~~- 511 (539)
... ..+++.++.++++++.+|..+++.++..+... | .++...+.|++.+++.
T Consensus 140 ~~~-~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~ 218 (291)
T 1ks9_A 140 GPA-RQQDGDYSYLADILQTVLPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE 218 (291)
T ss_dssp EES-SGGGTTCTHHHHHHHTTSSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred ccC-CCCcchHHHHHHHHHhcCCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHc
Confidence 221 23567788999999999998888877443222 2 2334567799998876
Q ss_pred CCCH--HHH
Q 009256 512 GVDV--FRI 518 (539)
Q Consensus 512 G~~~--~~i 518 (539)
|+++ +++
T Consensus 219 G~~~~~~~~ 227 (291)
T 1ks9_A 219 GHHTSAEDL 227 (291)
T ss_dssp TCCCCHHHH
T ss_pred CCCCCHHHH
Confidence 9843 555
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-11 Score=121.16 Aligned_cols=187 Identities=13% Similarity=0.008 Sum_probs=112.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||++||..|+++|++|++||+++++++.+.+.. ... ...... + .+..+++.+.+.++
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g-------~~~-~~~~~~----~-~~~~~~~~~~~~~a 81 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSH-------TSP-YVEESK----I-TVRATNDLEEIKKE 81 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHS-------CBT-TBTTCC----C-CSEEESCGGGCCTT
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhC-------Ccc-cCCCCe----e-eEEEeCCHHHhcCC
Confidence 4899999999999999999999999999999998877664320 000 000000 0 24455566338899
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH---Hhh----ccCCCCcEEEeccCCCCC--CCCeeeee
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI---VGE----KTSSQDRIIGAHFFSPAH--VMPLLEIV 459 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~---i~~----~~~~~~r~vg~h~~~p~~--~~~~vei~ 459 (539)
|+||.|+|. .....++.++.+ +++++++.+.++...+ +.+ ... -...+...|..+.. .+....++
T Consensus 82 DvVil~vk~--~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~~~g~~~~~~ 155 (335)
T 1z82_A 82 DILVIAIPV--QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEVAKKLPTAVT 155 (335)
T ss_dssp EEEEECSCG--GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHHHTTCCEEEE
T ss_pred CEEEEECCH--HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHHhCCCceEEE
Confidence 999999984 344555555443 6778887776655422 111 121 01111122222111 12111222
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcCccc----------------------chhh---cchHHHHHHHHHHHHc-CC
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FAVN---RAFFPYSQSARLLVSL-GV 513 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g----------------------~v~n---rl~~~~~~Ea~~l~~~-G~ 513 (539)
.+.. + .+.+.++|+..|..+++..|..| +..| .+....+.|+..+++. |+
T Consensus 156 ~g~~-~---~~~~~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~ 231 (335)
T 1z82_A 156 LAGE-N---SKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGA 231 (335)
T ss_dssp EEET-T---HHHHHHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEeh-h---HHHHHHHhCCCCEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCC
Confidence 2211 2 77899999999988877766422 1112 2234566799999976 99
Q ss_pred CHHHH
Q 009256 514 DVFRI 518 (539)
Q Consensus 514 ~~~~i 518 (539)
+++.+
T Consensus 232 ~~~~~ 236 (335)
T 1z82_A 232 DQKTF 236 (335)
T ss_dssp CHHHH
T ss_pred Chhhh
Confidence 88765
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=122.09 Aligned_cols=191 Identities=15% Similarity=0.060 Sum_probs=119.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccC--Cc-c
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV--NSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVL--DY-S 383 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~--~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~--~~-~ 383 (539)
||+|||+|.||.++|..|+++|++|++||+ ++++++.+.+ .+. .... .. ...+..++ ++ +
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~g-~~--~~~~~~~~~~~~~~ 67 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA-----------GREHPRLG-VK--LNGVEIFWPEQLEK 67 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT-----------TCCBTTTT-BC--CCSEEEECGGGHHH
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH-----------hCcCcccC-cc--ccceEEecHHhHHH
Confidence 799999999999999999999999999999 8887766532 110 0000 00 01123343 44 5
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC---C---hHHHhhccCC--CCcEEEeccCCCCC---C
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI---D---LNIVGEKTSS--QDRIIGAHFFSPAH---V 452 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~---~---~~~i~~~~~~--~~r~vg~h~~~p~~---~ 452 (539)
.++++|+||.|+|.+ ....++.++.+ ++++++|++.+.++ + ...+.+.+.. +..........|.. .
T Consensus 68 ~~~~~D~vi~~v~~~--~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~ 144 (335)
T 1txg_A 68 CLENAEVVLLGVSTD--GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREV 144 (335)
T ss_dssp HHTTCSEEEECSCGG--GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHH
T ss_pred HHhcCCEEEEcCChH--HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHH
Confidence 578999999999965 46778888988 88898888877666 2 2344443332 11000011112211 1
Q ss_pred --CCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc----------------------ch-----hhc---chHH
Q 009256 453 --MPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG----------------------FA-----VNR---AFFP 500 (539)
Q Consensus 453 --~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g----------------------~v-----~nr---l~~~ 500 (539)
+....++.+. .+++.++.+.++++..|..+++..|..+ +. .|. +...
T Consensus 145 ~~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~ 223 (335)
T 1txg_A 145 AKRMPTTVVFSS-PSESSANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATR 223 (335)
T ss_dssp HTTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 1111122222 2678899999999999988877776421 11 232 2335
Q ss_pred HHHHHHHHHHc-CCCHHHH
Q 009256 501 YSQSARLLVSL-GVDVFRI 518 (539)
Q Consensus 501 ~~~Ea~~l~~~-G~~~~~i 518 (539)
.++|+..+++. |++++++
T Consensus 224 ~~~E~~~la~~~G~~~~~~ 242 (335)
T 1txg_A 224 AINEMAELIEILGGDRETA 242 (335)
T ss_dssp HHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHHCCCcchh
Confidence 56799998877 9877644
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-11 Score=122.81 Aligned_cols=154 Identities=11% Similarity=0.069 Sum_probs=108.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC------CCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN------NIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
++||+|||+|+||.++|..|.++ |++|++.+++.+ ..+.+ .+.|.... -....
T Consensus 54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A-----------~e~G~~v~---------d~ta~ 113 (525)
T 3fr7_A 54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEA-----------RAAGFTEE---------SGTLG 113 (525)
T ss_dssp CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHH-----------HHTTCCTT---------TTCEE
T ss_pred CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHH-----------HHCCCEEe---------cCCCC
Confidence 47899999999999999999999 999987776543 23332 11221100 00012
Q ss_pred Cc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhh---ccCCCCcEEEeccCCCCCC----
Q 009256 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGE---KTSSQDRIIGAHFFSPAHV---- 452 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~---~~~~~~r~vg~h~~~p~~~---- 452 (539)
+. +++++||+||.++|+.. ...++.++.++++++++| +...++.+..+.. ..+....++..+|..|.+.
T Consensus 114 s~aEAa~~ADVVILaVP~~~--~~eVl~eI~p~LK~GaIL-s~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~ 190 (525)
T 3fr7_A 114 DIWETVSGSDLVLLLISDAA--QADNYEKIFSHMKPNSIL-GLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRL 190 (525)
T ss_dssp EHHHHHHHCSEEEECSCHHH--HHHHHHHHHHHSCTTCEE-EESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHH
T ss_pred CHHHHHhcCCEEEECCChHH--HHHHHHHHHHhcCCCCeE-EEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHH
Confidence 33 67889999999999544 346788999999999985 6788888876654 3333457999999888764
Q ss_pred ---C-----Ceee--eecCCCCcHHHHHHHHHHHHHcCceeE
Q 009256 453 ---M-----PLLE--IVRTERTSAQVILDLMTVGKIIKKVPV 484 (539)
Q Consensus 453 ---~-----~~ve--i~~~~~t~~e~~~~~~~l~~~lg~~~v 484 (539)
+ ..+. +......+.+..+.+..++..+|...+
T Consensus 191 y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~v 232 (525)
T 3fr7_A 191 YVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFT 232 (525)
T ss_dssp HHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEE
T ss_pred HhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCee
Confidence 1 1122 333445677899999999999998753
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-10 Score=115.45 Aligned_cols=169 Identities=11% Similarity=0.133 Sum_probs=104.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++||+|||+|.||+.+|..|+++|++|++|+++ +..+.+.+ .|......-......+..+++.+.+.+
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~-----------~g~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQT-----------AGLRLTEDGATHTLPVRATHDAAALGE 70 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHH-----------TCEEEEETTEEEEECCEEESCHHHHCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHH-----------CCCEEecCCCeEEEeeeEECCHHHcCC
Confidence 468999999999999999999999999999996 45444321 111000000000012334456655789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC-------------------hH-HHhhccCCCCcEEEe-cc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID-------------------LN-IVGEKTSSQDRIIGA-HF 446 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~-------------------~~-~i~~~~~~~~r~vg~-h~ 446 (539)
+|+||+|+|. .....+++++.++++++++|++.+.+++ .. .+.+.++ ..++++. -+
T Consensus 71 ~D~Vilavk~--~~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~~v~~gv~~ 147 (335)
T 3ghy_A 71 QDVVIVAVKA--PALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP-TRHVLGCVVH 147 (335)
T ss_dssp CSEEEECCCH--HHHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC-GGGEEEEEEC
T ss_pred CCEEEEeCCc--hhHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC-cccEEEEEEE
Confidence 9999999985 3456788888888999999998888853 11 3444443 2344432 21
Q ss_pred C-----CCCC---CCCe-eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 447 F-----SPAH---VMPL-LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 447 ~-----~p~~---~~~~-vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
. .|-. .... +.+-..+..+.+..+.+.++|...|..+....|..+
T Consensus 148 ~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~ 201 (335)
T 3ghy_A 148 LTCATVSPGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQR 201 (335)
T ss_dssp CCEEESSTTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHH
T ss_pred EEEEEcCCcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHH
Confidence 1 1111 1111 111111223457778899999999988777777554
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=117.63 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=87.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||.++|..++.+|+ +|++||+++++++.....+.+...... ...+++.+++++++++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al~~ 82 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIG------------SPAKIFGENNYEYLQN 82 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHT------------CCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccC------------CCCEEEECCCHHHHCC
Confidence 489999999999999999999999 999999999988865444333322111 0135777778888999
Q ss_pred cCEEEEcc--cC------------ChhHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhhccC--CCCcEEEe
Q 009256 388 VDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIGA 444 (539)
Q Consensus 388 aDlVi~av--pe------------~~~~~~~~~~~l~~~~~~~~ii--~s~ts~~~~~~i~~~~~--~~~r~vg~ 444 (539)
||+||+++ |. +..+++++++++.+++ |++++ +||.+... ..+..... .|.|++|+
T Consensus 83 aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-t~~~~~~~~~~~~rviG~ 155 (328)
T 2hjr_A 83 SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNPLDAM-VYYFKEKSGIPANKVCGM 155 (328)
T ss_dssp CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEEES
T ss_pred CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCchHHH-HHHHHHhcCCChhhEEEe
Confidence 99999998 54 3466889999999998 55554 34443322 23332222 56778776
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.1e-10 Score=112.34 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=108.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.++||+|||+|.||+.+|..|+++|++|++| ++++.++.+.+.- + .+...... ....+..+++.+.+.
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g---~--~~~~~~~~------~~~~~~~~~~~~~~~ 85 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATG---L--RLETQSFD------EQVKVSASSDPSAVQ 85 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHC---E--EEECSSCE------EEECCEEESCGGGGT
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCC---e--EEEcCCCc------EEEeeeeeCCHHHcC
Confidence 3568999999999999999999999999999 9988877764320 0 00000000 002344456666678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccCCCCcEEEec------cCCCC---CCCCee
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTSSQDRIIGAH------FFSPA---HVMPLL 456 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~~~~r~vg~h------~~~p~---~~~~~v 456 (539)
++|+||+|+|.. ..+.+++++.++++++++|++.++++... .+.+.++ .++++.. ...|- +.+...
T Consensus 86 ~~D~vilavk~~--~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~--~~vl~g~~~~~a~~~gP~~~~~~~~g~ 161 (318)
T 3hwr_A 86 GADLVLFCVKST--DTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLE--QEVAAAVVYVATEMAGPGHVRHHGRGE 161 (318)
T ss_dssp TCSEEEECCCGG--GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCC--SEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEcccc--cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcC--CcEEEEEEEEeEEEcCCeEEEEcCCce
Confidence 999999999965 45788899999999999999999999874 5555554 4444321 11111 111111
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCccc
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCTG 491 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g 491 (539)
..+.. .+..+.+.++|...|..+.+..|..+
T Consensus 162 ~~ig~----~~~~~~l~~~l~~~~~~~~~~~Di~~ 192 (318)
T 3hwr_A 162 LVIEP----TSHGANLAAIFAAAGVPVETSDNVRG 192 (318)
T ss_dssp EEECC----CTTTHHHHHHHHHTTCCEEECSCHHH
T ss_pred EEEcC----CHHHHHHHHHHHhCCCCcEechHHHH
Confidence 11222 23456788888988888777777444
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=114.85 Aligned_cols=123 Identities=20% Similarity=0.303 Sum_probs=86.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
++||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+++.+.... ...+++.++++++++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~------------~~~~i~~t~d~~al~ 71 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAY------------SNCKVSGSNTYDDLA 71 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHT------------CCCCEEEECCGGGGT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcC------------CCcEEEECCCHHHhC
Confidence 4689999999999999999999998 999999999988765544433322111 013566667888899
Q ss_pred CcCEEEEcc--cCCh-----------------hHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhhccC--CCCcEEE
Q 009256 387 DVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS--SQDRIIG 443 (539)
Q Consensus 387 ~aDlVi~av--pe~~-----------------~~~~~~~~~l~~~~~~~~ii--~s~ts~~~~~~i~~~~~--~~~r~vg 443 (539)
+||+||+++ |.++ .+++++++++.+++ |++++ +||.+.+. +.+..... .|.|++|
T Consensus 72 ~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP~~~~-t~~~~~~~g~~~~rviG 149 (322)
T 1t2d_A 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNPVDVM-VQLLHQHSGVPKNKIIG 149 (322)
T ss_dssp TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSHHHH-HHHHHHHHCCCGGGEEE
T ss_pred CCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCChHHH-HHHHHHhcCCChHHEEe
Confidence 999999998 5432 36888889999998 55554 34443332 23332223 4667777
Q ss_pred e
Q 009256 444 A 444 (539)
Q Consensus 444 ~ 444 (539)
+
T Consensus 150 ~ 150 (322)
T 1t2d_A 150 L 150 (322)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-11 Score=116.11 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=98.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|+|||+|.||..++..|.+.|++|++||++++ .+.+.+ .+ +...+..+.++++
T Consensus 20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~-----------~g-------------~~~~~~~~~~~~a 74 (201)
T 2yjz_A 20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLP-----------RG-------------AEVLCYSEAASRS 74 (201)
Confidence 4799999999999999999999999999999876 332211 01 1122222667899
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--------HHHhhccCCCCcEEEeccCCCCCCCC-ee---
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--------NIVGEKTSSQDRIIGAHFFSPAHVMP-LL--- 456 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--------~~i~~~~~~~~r~vg~h~~~p~~~~~-~v--- 456 (539)
|+||.++|.+ . .+.++ ++.. ..++++|++.+++++. ..+...++. .+++...++.|..... ..
T Consensus 75 DvVilav~~~-~-~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~-~~vvra~~n~~a~~~~~g~l~g 149 (201)
T 2yjz_A 75 DVIVLAVHRE-H-YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPG-AHVVKAFNTISAWALQSGTLDA 149 (201)
Confidence 9999999964 3 33444 4543 3467788888877753 334333332 3454544444443322 11
Q ss_pred ---eeecCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 457 ---EIVRTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 457 ---ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.++.+. +++.++.++++++.+|..++++++
T Consensus 150 ~~~~~~~g~--~~~~~~~v~~ll~~~G~~~~~~G~ 182 (201)
T 2yjz_A 150 SRQVFVCGN--DSKAKDRVMDIARTLGLTPLDQGS 182 (201)
Confidence 233332 678899999999999999999876
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-10 Score=115.58 Aligned_cols=123 Identities=21% Similarity=0.256 Sum_probs=86.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc-CC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS-EF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 385 (539)
.+||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+..... + . ..+++.+++++ ++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~---~-~--------~~~i~~t~d~~ea~ 76 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV---D-T--------NVSVRAEYSYEAAL 76 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT---T-C--------CCCEEEECSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc---C-C--------CCEEEEeCCHHHHh
Confidence 3589999999999999999999998 99999999988887544444333211 1 0 13567778884 89
Q ss_pred CCcCEEEEcc--cCCh-----------------hHHHHHHHHHHHhCCCCeEEE--ecCCCCChHHHhhccC--CCCcEE
Q 009256 386 KDVDMVIEAV--IESV-----------------PLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTS--SQDRII 442 (539)
Q Consensus 386 ~~aDlVi~av--pe~~-----------------~~~~~~~~~l~~~~~~~~ii~--s~ts~~~~~~i~~~~~--~~~r~v 442 (539)
++||+||+++ |.++ .+++++++++.+++ |+++++ ||.+++. +.+..... .|.|++
T Consensus 77 ~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP~~~~-t~~~~~~~~~~~~rvi 154 (331)
T 1pzg_A 77 TGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPLDCM-VKVMCEASGVPTNMIC 154 (331)
T ss_dssp TTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSHHHH-HHHHHHHHCCCGGGEE
T ss_pred CCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCchHHH-HHHHHHhcCCChhcEE
Confidence 9999999998 7544 34788889999998 556553 4443332 23332222 466777
Q ss_pred Ee
Q 009256 443 GA 444 (539)
Q Consensus 443 g~ 444 (539)
|+
T Consensus 155 G~ 156 (331)
T 1pzg_A 155 GM 156 (331)
T ss_dssp EC
T ss_pred ec
Confidence 75
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3e-10 Score=106.48 Aligned_cols=141 Identities=19% Similarity=0.167 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++..+.+.+.+.|..++.++.++.|+|.=. |-|+++. ....++ +.|..+++||++.+.
T Consensus 35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~In----SPGG~v~----------------a~~~I~-~~i~~~~~pV~~~v~ 93 (208)
T 2cby_A 35 EVNDEIANRLCAQILLLAAEDASKDISLYIN----SPGGSIS----------------AGMAIY-DTMVLAPCDIATYAM 93 (208)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHCSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhCCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEC
Confidence 3788999999999999987776777766421 1222221 123455 678899999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchh------------------hccccccC--HHHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT------------------QRLPRLVG--LSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~vG--~~~a~~l~l 164 (539)
|.|.++|..++++||. |++.+++.++.....-|. .|-. ..+.+..| .....+++.
T Consensus 94 g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~ 170 (208)
T 2cby_A 94 GMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSD 170 (208)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred cEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHh
Confidence 9999999999999999 999999999987654221 1110 11223333 344667888
Q ss_pred cCCCCCHHHHHHcCCcceecCc-chHHH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTS-EELLK 191 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~-~~l~~ 191 (539)
.|+.++++||+++||||+|.+. +++.+
T Consensus 171 ~~~~~ta~eA~e~GLvD~i~~~~~~ll~ 198 (208)
T 2cby_A 171 RDRWFTAAEALEYGFVDHIITRAHVNGE 198 (208)
T ss_dssp TTCEEEHHHHHHHTSCSEECSCC-----
T ss_pred CCcEEcHHHHHHcCCCcEecCchHHHHH
Confidence 9999999999999999999854 45544
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.8e-10 Score=110.60 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=92.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.||.+++..|+..|+ +|++||+++++++.....+.+... .. . ...+.. ++.++++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~-~~--~----------~~~i~~-~d~~~~~ 66 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP-FT--R----------RANIYA-GDYADLK 66 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG-GS--C----------CCEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhh-hc--C----------CcEEEe-CCHHHhC
Confidence 389999999999999999999999 999999999887765443322211 00 0 023333 3567889
Q ss_pred CcCEEEEcccCCh--------------hHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhhcc-C-CCCcEEEeccCCC
Q 009256 387 DVDMVIEAVIESV--------------PLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT-S-SQDRIIGAHFFSP 449 (539)
Q Consensus 387 ~aDlVi~avpe~~--------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~i~~~~-~-~~~r~vg~h~~~p 449 (539)
+||+||++++... .+++++++++.++++ +++++..+.+... +.+.... . .+.|++|+
T Consensus 67 ~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~----- 140 (319)
T 1a5z_A 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP-DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS----- 140 (319)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC-----
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeCCcHHHHHHHHHHHhCCChhhEEee-----
Confidence 9999999998532 356788888988874 5544433322222 2232222 2 45677775
Q ss_pred CCCCCeeeeecCCCCcHHHHHHHHHHHHHcCc
Q 009256 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481 (539)
Q Consensus 450 ~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~ 481 (539)
.|..+.......+.+.+|.
T Consensus 141 -------------~t~ld~~r~~~~la~~lgv 159 (319)
T 1a5z_A 141 -------------GTVLDTARLRTLIAQHCGF 159 (319)
T ss_dssp -------------TTHHHHHHHHHHHHHHHTC
T ss_pred -------------CccHHHHHHHHHHHHHhCc
Confidence 3455666666667777774
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.6e-09 Score=105.06 Aligned_cols=165 Identities=13% Similarity=0.050 Sum_probs=104.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||+.+|..|+++|++|++|+|++ .+...+ .|.. ........+..+..+++.+.+.+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~-----------~g~~~~~~~g~~~~~~~~~~~~~~~~~~ 69 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAG-----------NGLKVFSINGDFTLPHVKGYRAPEEIGP 69 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHH-----------TCEEEEETTCCEEESCCCEESCHHHHCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHh-----------CCCEEEcCCCeEEEeeceeecCHHHcCC
Confidence 489999999999999999999999999999986 233321 1110 00000000001333455555789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhhccCCCCcEEEec------cCCCC---CCCCe-e
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAH------FFSPA---HVMPL-L 456 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~i~~~~~~~~r~vg~h------~~~p~---~~~~~-v 456 (539)
+|+||.++|... ...+++++.++++++++|++...++.. ..+.+.++. .++++.. ...|- +.++. +
T Consensus 70 ~D~vilavk~~~--~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~-~~v~~~~~~~~a~~~~p~~v~~~~~g~~ 146 (312)
T 3hn2_A 70 MDLVLVGLKTFA--NSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGA-ERIIGGVAFLCSNRGEPGEVHHLGAGRI 146 (312)
T ss_dssp CSEEEECCCGGG--GGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCG-GGEEEEEEEEECCBCSSSEEEECEEEEE
T ss_pred CCEEEEecCCCC--cHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCC-CcEEEEEEEeeeEEcCCcEEEECCCCeE
Confidence 999999998443 557889999999999999999999874 455555543 2443332 11111 11111 1
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEEcCc
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVVGNC 489 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~ 489 (539)
.+-..+..+.+..+.+.++|...|.......|.
T Consensus 147 ~ig~~~~~~~~~~~~l~~~l~~~g~~~~~~~di 179 (312)
T 3hn2_A 147 ILGEFLPRDTGRIEELAAMFRQAGVDCRTTDDL 179 (312)
T ss_dssp EEEESSCCCSHHHHHHHHHHHHTTCCEEECSCH
T ss_pred EEecCCCCccHHHHHHHHHHHhCCCCcEEChHH
Confidence 122223335677788999999988887766664
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=6.1e-10 Score=110.54 Aligned_cols=122 Identities=21% Similarity=0.271 Sum_probs=80.9
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 304 KPRGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 304 ~~~~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
..++++||+|||+|.||..+|..++.+|+ +|+++|++++....+.+ +.. .. . .+++.+++
T Consensus 10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~d-l~~-----~~-~-----------~~i~~t~d 71 (303)
T 2i6t_A 10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMD-LEI-----FN-L-----------PNVEISKD 71 (303)
T ss_dssp ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHH-HHH-----HT-C-----------TTEEEESC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHH-Hhh-----hc-C-----------CCeEEeCC
Confidence 34556899999999999999999999999 99999999863222221 111 00 0 24666678
Q ss_pred ccCCCCcCEEEEcc-------------cCChhHHHHHHHHHHHhCCCCeEE--EecCCCCChHHHhhccC-CCCcEEEe
Q 009256 382 YSEFKDVDMVIEAV-------------IESVPLKQKIFSELEKACPPHCIL--ATNTSTIDLNIVGEKTS-SQDRIIGA 444 (539)
Q Consensus 382 ~~~~~~aDlVi~av-------------pe~~~~~~~~~~~l~~~~~~~~ii--~s~ts~~~~~~i~~~~~-~~~r~vg~ 444 (539)
++++++||+||+++ .++..+++++++++.+++ |++++ +||...+....+..... .|.|++|+
T Consensus 72 ~~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~ 149 (303)
T 2i6t_A 72 LSASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI 149 (303)
T ss_dssp GGGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred HHHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence 88899999999997 788889999999999998 55554 34432211112222222 25688887
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.7e-09 Score=103.44 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=104.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHH-hhHhcCCCCHHHHHHHhhcccccCCccCC-C
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVR-GLVTRGKLTQDKANNALKMLKGVLDYSEF-K 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 386 (539)
+||+|||+|.||+.+|..|+++|++|++|+|++. +.+.+. .+. .....+... +..+..+++.+.+ +
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~---Gl~~~~~~~g~~~-------~~~~~~~~~~~~~~~ 70 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAK---GIRIRSATLGDYT-------FRPAAVVRSAAELET 70 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHH---CEEEEETTTCCEE-------ECCSCEESCGGGCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhC---CcEEeecCCCcEE-------EeeeeeECCHHHcCC
Confidence 4899999999999999999999999999999862 333211 000 000001000 0013344566444 4
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhhccCCCCcEEEec-cC-----CCCC---CCCe-
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKTSSQDRIIGAH-FF-----SPAH---VMPL- 455 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~i~~~~~~~~r~vg~h-~~-----~p~~---~~~~- 455 (539)
++|+||.|+|... ...+++++.++++++++|++...++.. ..+++.++.. ++++.. +. .|-. ..+.
T Consensus 71 ~~DlVilavK~~~--~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~-~vl~g~~~~~a~~~~pg~v~~~~~~~ 147 (320)
T 3i83_A 71 KPDCTLLCIKVVE--GADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN-EVISGLAFIGVTRTAPGEIWHQAYGR 147 (320)
T ss_dssp CCSEEEECCCCCT--TCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS-CEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEecCCCC--hHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC-cEEEEEEEeceEEcCCCEEEECCCCE
Confidence 8999999998654 346788899999999988888888874 5566655533 444332 21 1111 1111
Q ss_pred eeeecCCCCcHHHHHHHHHHHHHcCceeEEEcCcc
Q 009256 456 LEIVRTERTSAQVILDLMTVGKIIKKVPVVVGNCT 490 (539)
Q Consensus 456 vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~ 490 (539)
+.+-..+..+.+..+.+.++|...|..+.+..|..
T Consensus 148 ~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~di~ 182 (320)
T 3i83_A 148 LMLGNYPGGVSERVKTLAAAFEEAGIDGIATENIT 182 (320)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHTTSCEEECSCHH
T ss_pred EEEecCCCCccHHHHHHHHHHHhCCCCceECHHHH
Confidence 11111123345677889999999888877776644
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=105.65 Aligned_cols=121 Identities=15% Similarity=0.235 Sum_probs=81.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.||.+++..++..|+ +|+++|+++++++.....+.+.... .....+++.+++++++++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~------------~~~~~~i~~t~d~~a~~~ 70 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPI------------EGFDVRVTGTNNYADTAN 70 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHH------------HTCCCCEEEESCGGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhh------------cCCCeEEEECCCHHHHCC
Confidence 589999999999999999999997 9999999998776433222211100 000134666677888999
Q ss_pred cCEEEEcc--------------cCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhc----c-CCCCcEEEe
Q 009256 388 VDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEK----T-SSQDRIIGA 444 (539)
Q Consensus 388 aDlVi~av--------------pe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~----~-~~~~r~vg~ 444 (539)
||+||+++ .++..+++++++.+.++. ++++++..| .|+..+... . -.|.|++|+
T Consensus 71 aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~t--NPv~~~t~~~~~~~~~~~~rviG~ 143 (309)
T 1ur5_A 71 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVN--NPLDAMTYLAAEVSGFPKERVIGQ 143 (309)
T ss_dssp CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcC--CchHHHHHHHHHHcCCCHHHEEEC
Confidence 99999997 334567778888898887 566554322 344332221 1 134577776
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.5e-09 Score=106.54 Aligned_cols=119 Identities=20% Similarity=0.299 Sum_probs=78.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCccCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
+||+|||+|.||.++|..++.+|+ +|++||+++++++.....+ .... .. ...+++. ++++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l--------~~~~~~~------~~~~i~~-~~~~a~ 65 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDI--------AHAAPVS------HGTRVWH-GGHSEL 65 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHH--------TTSCCTT------SCCEEEE-ECGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhh--------hhhhhhc------CCeEEEE-CCHHHh
Confidence 389999999999999999999999 9999999987665422211 1110 00 0012332 456889
Q ss_pred CCcCEEEEccc--C------------ChhHHHHHHHHHHHhCCCCeEEE--ecCCCCChHHHhhccCCCCcEEEe
Q 009256 386 KDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILA--TNTSTIDLNIVGEKTSSQDRIIGA 444 (539)
Q Consensus 386 ~~aDlVi~avp--e------------~~~~~~~~~~~l~~~~~~~~ii~--s~ts~~~~~~i~~~~~~~~r~vg~ 444 (539)
++||+||++++ . +..+++.+++++.++. ++++++ +|........+++.. .|+|++|+
T Consensus 66 ~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~~tNP~~~~~~~~~~~~-~~~rviG~ 138 (304)
T 2v6b_A 66 ADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLVTSNPVDLLTDLATQLA-PGQPVIGS 138 (304)
T ss_dssp TTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEECSSSHHHHHHHHHHHS-CSSCEEEC
T ss_pred CCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEEecCchHHHHHHHHHhC-ChhcEEeC
Confidence 99999999983 2 3446788888999986 566554 333332222233333 66788776
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-09 Score=109.59 Aligned_cols=117 Identities=14% Similarity=-0.000 Sum_probs=82.4
Q ss_pred ceEEEEcCCCCcHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHI-LNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||.++|..+. ..|++|++||++++..+...+ . .+...+++ +.++
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~l~ell~ 219 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKA-----------L-------------GAERVDSLEELAR 219 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHH-----------H-------------TCEECSSHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhh-----------c-------------CcEEeCCHHHHhc
Confidence 48999999999999999999 899999999998765443211 0 12223344 5578
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccCCC-CcEEEeccCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQ-DRIIGAHFFSP 449 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~~~-~r~vg~h~~~p 449 (539)
+||+|++++|.+.+.+..+.+++.+.++++++++..+++ .....+...+... -...|+++|.+
T Consensus 220 ~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 285 (348)
T 2w2k_A 220 RSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEF 285 (348)
T ss_dssp HCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred cCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence 999999999987766554445666789999988865555 3334565555432 12357788773
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-09 Score=108.76 Aligned_cols=117 Identities=13% Similarity=0.055 Sum_probs=80.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|++|++||++++..+... +.+ +... ++ +.+++
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~-~l~e~l~~ 210 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAA-----------EFQ-------------AEFV-STPELAAQ 210 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHH-----------TTT-------------CEEC-CHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHH-----------hcC-------------ceeC-CHHHHHhh
Confidence 4899999999999999999999999999999876544321 111 2222 44 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccCC-CCcEEEeccCCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHFFSPA 450 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~~-~~r~vg~h~~~p~ 450 (539)
||+|++++|.+.+.+..+.+++.+.+++++++++.+++ .....+...+.. .-...++++|.+.
T Consensus 211 aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~e 276 (330)
T 2gcg_A 211 SDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPE 276 (330)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred CCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCC
Confidence 99999999987654444335666788999988765555 333455544432 2234678877653
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=100.53 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=79.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~ 384 (539)
|+||+|||+|.||.++|..|+.+| ++|++||+++++++.....+.+... ..+ ..+.. ++++++
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~---~~~-----------~~~~~~~~d~~~ 66 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA---NLE-----------AHGNIVINDWAA 66 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG---GSS-----------SCCEEEESCGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhh---hcC-----------CCeEEEeCCHHH
Confidence 358999999999999999999999 7999999999887766443321110 000 11222 345678
Q ss_pred CCCcCEEEEcccCChh------------------HHHHHHHHHHHhCCCCeEEEecCCCCCh-HHHhhcc--CCCCcEEE
Q 009256 385 FKDVDMVIEAVIESVP------------------LKQKIFSELEKACPPHCILATNTSTIDL-NIVGEKT--SSQDRIIG 443 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~------------------~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~i~~~~--~~~~r~vg 443 (539)
+++||+||++++.... +++.+++++.++.+ +++++..+.+..+ ..+.... -.+.+++|
T Consensus 67 ~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig 145 (309)
T 1hyh_A 67 LADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIG 145 (309)
T ss_dssp GTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred hCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEEcCcHHHHHHHHHHhcCCCHHHEee
Confidence 8999999999986442 35677888888775 5555433333222 1222221 23567777
Q ss_pred e
Q 009256 444 A 444 (539)
Q Consensus 444 ~ 444 (539)
+
T Consensus 146 ~ 146 (309)
T 1hyh_A 146 T 146 (309)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=100.84 Aligned_cols=120 Identities=12% Similarity=0.205 Sum_probs=80.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
||+|||+|.||.+++..++..|+ +|+++|+++++++.....+.+.... .... .+++.+++++++++|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~-~~~~-----------~~i~~t~d~~a~~~a 68 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAE-LGVD-----------IRISGSNSYEDMRGS 68 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHH-HTCC-----------CCEEEESCGGGGTTC
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhh-cCCC-----------eEEEECCCHHHhCCC
Confidence 69999999999999999998888 7999999998876543333221110 0001 235555678899999
Q ss_pred CEEEEcc--------------cCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhcc----C-CCCcEEEe
Q 009256 389 DMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKT----S-SQDRIIGA 444 (539)
Q Consensus 389 DlVi~av--------------pe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~----~-~~~r~vg~ 444 (539)
|+||++. ..+..+++++.+++.+++ |+++++..| .|+..+.... . .|.|++|+
T Consensus 69 D~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~t--NPv~~~t~~~~k~~~~p~~rviG~ 140 (308)
T 2d4a_B 69 DIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITT--NPVDAMTYVMYKKTGFPRERVIGF 140 (308)
T ss_dssp SEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeC--CchHHHHHHHHHhcCCChhhEEEe
Confidence 9999994 345567888888999987 555443322 2554333322 1 24567765
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-08 Score=98.64 Aligned_cols=107 Identities=21% Similarity=0.229 Sum_probs=72.3
Q ss_pred CCCCcceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC--hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 304 KPRGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 304 ~~~~~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
|.+..+||+|||+|.||.++|..++..|+ +|+++|++ ++.++.....+.... .... ...++..++
T Consensus 4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~-~~~~-----------~~~~i~~t~ 71 (315)
T 3tl2_A 4 MTIKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEAS-PVQG-----------FDANIIGTS 71 (315)
T ss_dssp CCCCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHH-HHHT-----------CCCCEEEES
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhh-hhcc-----------CCCEEEEcC
Confidence 44456799999999999999999999999 99999999 444443322222111 0010 113466667
Q ss_pred CccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 381 DYSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 381 ~~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+++++++||+||++... +..+.+.+.+.+.++.+ +++++..+
T Consensus 72 d~~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vlvvs 127 (315)
T 3tl2_A 72 DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSP-NAIIVVLT 127 (315)
T ss_dssp CGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECC
T ss_pred CHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEECC
Confidence 78999999999999732 22355666677888875 55554333
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-08 Score=99.23 Aligned_cols=104 Identities=20% Similarity=0.267 Sum_probs=72.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
.++||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+... ..... ..+..+++++++
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~-~~~~~-----------~~v~~t~d~~a~ 73 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSP-VDGFD-----------AKFTGANDYAAI 73 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHH-HHTCC-----------CCEEEESSGGGG
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhh-hcCCC-----------CEEEEeCCHHHH
Confidence 45699999999999999999999999 999999999887644333322211 01101 245556778999
Q ss_pred CCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 386 ~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++||+||.+... +..+.+.+.+.+.++. |+++++..+
T Consensus 74 ~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvt 124 (324)
T 3gvi_A 74 EGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICIT 124 (324)
T ss_dssp TTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred CCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecC
Confidence 999999998631 2344556667788887 555554334
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-08 Score=102.22 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=73.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc-cccCCc-cCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML-KGVLDY-SEF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~-~~~ 385 (539)
++||+|||+|.||..+|..|+++|++|++||++++.++.+.+... -.+.....+ ....+ ..++++ +.+
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~ 73 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA----IIAEGPGLA------GTAHPDLLTSDIGLAV 73 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS----EEEESSSCC------EEECCSEEESCHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCC----eEEeccccc------cccccceecCCHHHHH
Confidence 358999999999999999999999999999999988776643200 000000000 00112 234455 457
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
.++|+||+|+|.+.. ..+++++.+.++++++|++..
T Consensus 74 ~~~D~vi~~v~~~~~--~~~~~~l~~~l~~~~~vv~~~ 109 (359)
T 1bg6_A 74 KDADVILIVVPAIHH--ASIAANIASYISEGQLIILNP 109 (359)
T ss_dssp TTCSEEEECSCGGGH--HHHHHHHGGGCCTTCEEEESS
T ss_pred hcCCEEEEeCCchHH--HHHHHHHHHhCCCCCEEEEcC
Confidence 899999999996653 678888999999999777663
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.4e-08 Score=97.74 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.||.++|..|+.+ |++|++||+++++++.....+.+.... . . ...++..++++++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~-~--~---------~~~~i~~t~d~~~l~ 68 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPV-G--L---------FDTKVTGSNDYADTA 68 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHH-H--T---------CCCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhc-c--c---------CCcEEEECCCHHHHC
Confidence 3899999999999999999985 799999999998877543222111100 0 0 013466667786699
Q ss_pred CcCEEEEcccCC--------------hhHHHHHHHHHHHhCCCCeEE
Q 009256 387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCIL 419 (539)
Q Consensus 387 ~aDlVi~avpe~--------------~~~~~~~~~~l~~~~~~~~ii 419 (539)
+||+||+++|.. ..+.+.+.+.+.++.++..++
T Consensus 69 ~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~vi 115 (310)
T 1guz_A 69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIII 115 (310)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 999999999642 134456677788886544433
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.1e-09 Score=107.15 Aligned_cols=114 Identities=16% Similarity=0.072 Sum_probs=80.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|++|++||++++. +...+ .| +.. .++ +.+++
T Consensus 151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g-------------~~~-~~l~~~l~~ 204 (334)
T 2dbq_A 151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERE-----------LN-------------AEF-KPLEDLLRE 204 (334)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHH-----------HC-------------CEE-CCHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhh-----------cC-------------ccc-CCHHHHHhh
Confidence 58999999999999999999999999999999876 32211 01 122 244 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCC-CCcEEEeccCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFS 448 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~-~~r~vg~h~~~ 448 (539)
||+|++++|.+.+.+..+.+++.+.+++++++++.+.+..+. .+...+.. .-...++++|+
T Consensus 205 aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~ 268 (334)
T 2dbq_A 205 SDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFE 268 (334)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCS
T ss_pred CCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCC
Confidence 999999999877654433356677889999887666554443 44444432 22346788876
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-09 Score=105.12 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=78.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++. +...+ .| +... ++ +.+++
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~-----------~g-------------~~~~-~l~e~l~~ 200 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKE-----------LK-------------ARYM-DIDELLEK 200 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHH-----------HT-------------EEEC-CHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhh-----------cC-------------ceec-CHHHHHhh
Confidence 48999999999999999999999999999999875 32211 01 1222 44 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCC-CCcEEEeccCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSS-QDRIIGAHFFS 448 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~-~~r~vg~h~~~ 448 (539)
||+|++++|.+.+.+..+-+++.+.++++ ++++.+.+..+. .+...+.. .-...|+++|.
T Consensus 201 aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~ 263 (333)
T 2d0i_A 201 SDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263 (333)
T ss_dssp CSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCS
T ss_pred CCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCC
Confidence 99999999987655544444566778889 777655554443 34444433 23457888877
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.2e-08 Score=97.11 Aligned_cols=123 Identities=26% Similarity=0.376 Sum_probs=79.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
++||+|||+|.||..++..|+.+|+ +|+++|+++++++.....+.+.+ ... + ...+..+++.+++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~-~~~--~----------~~~v~~~~~~~~~ 73 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS-SFY--P----------TVSIDGSDDPEIC 73 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG-GGS--T----------TCEEEEESCGGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhh-hhc--C----------CeEEEeCCCHHHh
Confidence 3589999999999999999999999 99999999877653211111111 000 0 0234444466788
Q ss_pred CCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH-Hhhc--cCCCCcEEEe
Q 009256 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNI-VGEK--TSSQDRIIGA 444 (539)
Q Consensus 386 ~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~-i~~~--~~~~~r~vg~ 444 (539)
++||+||+++.. +..+++.+++.+.++ .++++|++.+.++.... +... .-.+.+++|.
T Consensus 74 ~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~ 148 (319)
T 1lld_A 74 RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVDIATHVAQKLTGLPENQIFGS 148 (319)
T ss_dssp TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchHHHHHHHHHhcCCCHHHEeec
Confidence 999999999932 124556778888887 56777776665554432 2221 1123467665
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-08 Score=99.77 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=71.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
.++||+|||+|.||.++|..++..|+ +|+++|+++++++.....+++.... .... ..+..+++++++
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~-~~~~-----------~~v~~t~d~~a~ 71 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPI-EGVD-----------FKVRGTNDYKDL 71 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHH-HTCC-----------CCEEEESCGGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhh-cCCC-----------cEEEEcCCHHHH
Confidence 35699999999999999999999998 9999999998876443332211100 0000 234445677999
Q ss_pred CCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 386 KDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 386 ~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
++||+||.+.+. +..+.+.+.+.+.++. |+++++..
T Consensus 72 ~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivv 121 (321)
T 3p7m_A 72 ENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICI 121 (321)
T ss_dssp TTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred CCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEe
Confidence 999999998632 3345566667788888 55555433
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.4e-09 Score=105.70 Aligned_cols=111 Identities=14% Similarity=0.050 Sum_probs=79.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++..+ + .....++ +.+++
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----------------g-------------~~~~~~l~ell~~ 215 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----------------N-------------YTYYGSVVELASN 215 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----------------C-------------SEEESCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----------------C-------------ceecCCHHHHHhc
Confidence 4799999999999999999999999999999875311 1 1123344 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCC-CCcEEEeccCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFFS 448 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~-~~r~vg~h~~~ 448 (539)
||+|++++|.+.+.+..+-+++.+.+++++++++.+++..+ ..+...+.. .-+..++++|.
T Consensus 216 aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 216 SDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred CCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 99999999987655443334555677899988866665444 355554432 23566788776
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-08 Score=96.90 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=75.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
+.+||+|||+|.||.++|..++..|+ +|+++|+++++++.....+.+... .. ...++..++++++
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~----~~---------~~~~i~~t~d~~~ 86 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSL----FL---------HTAKIVSGKDYSV 86 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGG----GS---------CCSEEEEESSSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhh----cc---------cCCeEEEcCCHHH
Confidence 56799999999999999999999997 999999999887765444433211 00 0135666778888
Q ss_pred CCCcCEEEEcc--------------cCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 385 FKDVDMVIEAV--------------IESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 385 ~~~aDlVi~av--------------pe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+++||+||++. ..+..+++.+.+++.++. |+++++..+
T Consensus 87 ~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvvt 138 (330)
T 3ldh_A 87 SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELHP 138 (330)
T ss_dssp CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEECS
T ss_pred hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeCC
Confidence 99999999875 234567778888899995 555554333
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-08 Score=103.05 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=74.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCCeEEEEe---CChHHHHHHHHHHHHHHHhhHhcC------CCCHHHHHHHhhccc-
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLKE---VNSEYLLKGIKTIEANVRGLVTRG------KLTQDKANNALKMLK- 377 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~~V~~~d---~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~i~- 377 (539)
+||+|||+|.||..+|..|++ +|++|++|| ++++.++.+.+ +.+ ....... ....++.
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~----------~~g~~~~~~~~~~~~~-~~~~~~~~ 71 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALG----------ADELTVIVNEKDGTQT-EVKSRPKV 71 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHT----------TSCEEEEEECSSSCEE-EEEECCSE
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHh----------hccceeeeecCCCccc-eeeccceE
Confidence 589999999999999999988 599999999 87776665321 111 0000000 0001233
Q ss_pred ccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 378 GVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 378 ~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
.++++ +++.+||+||+|+|... ...+++++.++++++++|++++++..
T Consensus 72 ~~~~~~~a~~~aD~Vilav~~~~--~~~v~~~l~~~l~~~~ivv~~~~~~G 120 (404)
T 3c7a_A 72 ITKDPEIAISGADVVILTVPAFA--HEGYFQAMAPYVQDSALIVGLPSQAG 120 (404)
T ss_dssp EESCHHHHHTTCSEEEECSCGGG--HHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred EeCCHHHHhCCCCEEEEeCchHH--HHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence 45566 56789999999999655 67889999999999999988554443
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.7e-08 Score=108.08 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=96.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||+++.. +.+.+ .| +... ++ +.+++
T Consensus 143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-------------~~~~-~l~e~~~~ 196 (529)
T 1ygy_A 143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQ-----------LG-------------IELL-SLDDLLAR 196 (529)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHH-----------HT-------------CEEC-CHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh-----------cC-------------cEEc-CHHHHHhc
Confidence 58999999999999999999999999999998642 22211 11 1112 34 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH--HhhccCCC-CcEEEeccCC--CC-----CCCCeee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI--VGEKTSSQ-DRIIGAHFFS--PA-----HVMPLLE 457 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~--i~~~~~~~-~r~vg~h~~~--p~-----~~~~~ve 457 (539)
||+|+.++|.+.+....+-+++.+.+++++++++.+.+..+.+ +...+... -...+..+|. |+ ...+.+.
T Consensus 197 aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vi 276 (529)
T 1ygy_A 197 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVV 276 (529)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEE
T ss_pred CCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEE
Confidence 9999999997655443333346678999999987776655543 33443221 0111233322 11 2234566
Q ss_pred eecCCC-CcHHHHHH-----HHHHHHHcCcee
Q 009256 458 IVRTER-TSAQVILD-----LMTVGKIIKKVP 483 (539)
Q Consensus 458 i~~~~~-t~~e~~~~-----~~~l~~~lg~~~ 483 (539)
++|+.. +++++.++ +..+...++..+
T Consensus 277 lTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~ 308 (529)
T 1ygy_A 277 VTPHLGASTAEAQDRAGTDVAESVRLALAGEF 308 (529)
T ss_dssp ECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 778776 77887775 666777776544
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.8e-09 Score=101.24 Aligned_cols=124 Identities=10% Similarity=-0.029 Sum_probs=84.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++..+. ....+++ +.+++
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----------------------------~~~~~~l~ell~~ 173 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----------------------------DVISESPADLFRQ 173 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----------------------------SEECSSHHHHHHH
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----------------------------ccccCChHHHhhc
Confidence 58999999999999999999999999999998653211 1223344 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC-CCCcEEEeccCC-----CCCCCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFS-----PAHVMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~-~~~r~vg~h~~~-----p~~~~~~vei~ 459 (539)
||+|+.++|...+....+-++..+.++++++++..+.+..+ ..+...+. ..-...++..|. |-+..+.+.+.
T Consensus 174 aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~~pL~~~~nvilT 253 (290)
T 3gvx_A 174 SDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNLRNAILS 253 (290)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTSCCSCCCSSEEEC
T ss_pred cCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcccchhhhhhhhcC
Confidence 99999999976665544446677889999998866655433 34444332 222344555443 33344555666
Q ss_pred cC
Q 009256 460 RT 461 (539)
Q Consensus 460 ~~ 461 (539)
|+
T Consensus 254 PH 255 (290)
T 3gvx_A 254 PH 255 (290)
T ss_dssp CS
T ss_pred cc
Confidence 65
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.5e-09 Score=106.50 Aligned_cols=110 Identities=22% Similarity=0.173 Sum_probs=80.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--------eEEEEeCChHHHHH-HHHHHHHH--HHhhHhcCCCCHHHHHHHhhcc
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI--------YVVLKEVNSEYLLK-GIKTIEAN--VRGLVTRGKLTQDKANNALKML 376 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~--------~V~~~d~~~~~~~~-~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~i 376 (539)
..||+|||+|.||+++|..|+++|+ +|++|.++++...+ ..+.++.. -.+++..-.++ .++
T Consensus 34 p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp--------~~i 105 (391)
T 4fgw_A 34 PFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLP--------DNL 105 (391)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCC--------SSE
T ss_pred CCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCC--------CCc
Confidence 3489999999999999999999875 59999998763211 11111100 00111111122 467
Q ss_pred cccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 377 KGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 377 ~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
.+++|+ +++++||+||.++| .+..+.+++++.++++++.++++.+.++.
T Consensus 106 ~~t~dl~~al~~ad~ii~avP--s~~~r~~l~~l~~~~~~~~~iv~~~KGie 155 (391)
T 4fgw_A 106 VANPDLIDSVKDVDIIVFNIP--HQFLPRICSQLKGHVDSHVRAISCLKGFE 155 (391)
T ss_dssp EEESCHHHHHTTCSEEEECSC--GGGHHHHHHHHTTTSCTTCEEEECCCSCE
T ss_pred EEeCCHHHHHhcCCEEEEECC--hhhhHHHHHHhccccCCCceeEEeccccc
Confidence 888888 77999999999999 66688999999999999999998888875
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.2e-08 Score=96.94 Aligned_cols=141 Identities=11% Similarity=0.038 Sum_probs=86.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||.++|..+...|++|++||+ +++.. ...+ .| +....++ +.++
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~-----------~g-------------~~~~~~l~ell~ 201 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEAS-----------YQ-------------ATFHDSLDSLLS 201 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHH-----------HT-------------CEECSSHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhh-----------cC-------------cEEcCCHHHHHh
Confidence 4899999999999999999999999999999 87652 2111 11 1223244 5678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccCCC-CcEEEeccC--CCC-----CCCCee
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTSSQ-DRIIGAHFF--SPA-----HVMPLL 456 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~~~-~r~vg~h~~--~p~-----~~~~~v 456 (539)
+||+|+.++|.+.+....+-++..+.++++++++..+++- ....+...+... -.-.++.+| .|+ +..+.+
T Consensus 202 ~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nv 281 (320)
T 1gdh_A 202 VSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNT 281 (320)
T ss_dssp HCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTE
T ss_pred hCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCE
Confidence 9999999999766543333245667889999988766653 333444444321 111234443 222 223445
Q ss_pred eeecCCCC-cHHHHHHHHH
Q 009256 457 EIVRTERT-SAQVILDLMT 474 (539)
Q Consensus 457 ei~~~~~t-~~e~~~~~~~ 474 (539)
.++|+... +.++.+++..
T Consensus 282 iltPH~~~~t~~~~~~~~~ 300 (320)
T 1gdh_A 282 FLFPHIGSAATQAREDMAH 300 (320)
T ss_dssp EECSSCTTCBHHHHHHHHH
T ss_pred EECCcCCcCcHHHHHHHHH
Confidence 56665432 4444444433
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=8.6e-08 Score=95.84 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=67.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.++||+|||+|.||.+++..++..|. +|+++|+++++++.....+.+. ...-..+ -++. ++++++
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~----~~~~~~~--------~~i~-~~~~~a 71 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG----KVFAPKP--------VDIW-HGDYDD 71 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH----TTSSSSC--------CEEE-ECCGGG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHH----hhhcCCC--------eEEE-cCcHHH
Confidence 35699999999999999999998875 8999999987555432222211 1000000 1222 234588
Q ss_pred CCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeE
Q 009256 385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCI 418 (539)
Q Consensus 385 ~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~i 418 (539)
+++||+||++++. +..+++++.+.+.+++++..+
T Consensus 72 l~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~ 119 (316)
T 1ldn_A 72 CRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLF 119 (316)
T ss_dssp TTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEE
T ss_pred hCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEE
Confidence 9999999999542 346788888889998754433
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=92.55 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=69.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.||.++|..|+..|+ +|++||+++++++.....+.+....+ ... ..+..++++++++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~-~~~-----------~~i~~t~d~~a~~ 68 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGI-DKY-----------PKIVGGADYSLLK 68 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTT-TCC-----------CEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhc-CCC-----------CEEEEeCCHHHhC
Confidence 489999999999999999999998 99999999988764322222221100 000 2455566788999
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+||+||.+... +..+.+.+.+.+.++. |+++++..+
T Consensus 69 ~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvs 118 (294)
T 1oju_A 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVT 118 (294)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECS
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeC
Confidence 99999998742 1233445556677775 555555444
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.9e-07 Score=97.80 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=56.3
Q ss_pred ceEEEEcCCCC--cHHHHHHHHHC----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLM--GSGIATAHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~m--G~~iA~~l~~~----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|.| |.+++..|+.. |++|++||+++++++....... .++...... .+++.++|+
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~----~~l~~~~~~--------~~I~~ttD~ 71 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAK----KYVEEVGAD--------LKFEKTMNL 71 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHH----HHHHHTTCC--------CEEEEESCH
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHH----HHhccCCCC--------cEEEEECCH
Confidence 58999999997 56667788754 8999999999998887544332 222211111 467778888
Q ss_pred -cCCCCcCEEEEccc
Q 009256 383 -SEFKDVDMVIEAVI 396 (539)
Q Consensus 383 -~~~~~aDlVi~avp 396 (539)
+++++||+||++++
T Consensus 72 ~eal~dAD~VIiaag 86 (480)
T 1obb_A 72 DDVIIDADFVINTAM 86 (480)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred HHHhCCCCEEEECCC
Confidence 78999999999995
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-07 Score=92.47 Aligned_cols=110 Identities=20% Similarity=0.114 Sum_probs=73.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||+.+|..|+ +|++|++|+|+++.++.+.+. .+. ....+. . ....+ ..+.+...++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~---G~~-~~~~~~----~---~~~~~--~~~~~~~~~~ 68 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSE---GIR-LYKGGE----E---FRADC--SADTSINSDF 68 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH---CEE-EEETTE----E---EEECC--EEESSCCSCC
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhC---Cce-EecCCC----e---ecccc--cccccccCCC
Confidence 48999999999999999999 999999999999877765431 000 000000 0 00001 1112456789
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH-HHhhccC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN-IVGEKTS 436 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~-~i~~~~~ 436 (539)
|+||.|++ ......+++.+.+. ++++ |++...++... .+.+.++
T Consensus 69 D~vilavK--~~~~~~~l~~l~~~-~~~~-ivs~~nGi~~~e~l~~~~~ 113 (307)
T 3ego_A 69 DLLVVTVK--QHQLQSVFSSLERI-GKTN-ILFLQNGMGHIHDLKDWHV 113 (307)
T ss_dssp SEEEECCC--GGGHHHHHHHTTSS-CCCE-EEECCSSSHHHHHHHTCCC
T ss_pred CEEEEEeC--HHHHHHHHHHhhcC-CCCe-EEEecCCccHHHHHHHhCC
Confidence 99999997 44456777777654 6677 77888898876 4444443
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-07 Score=86.86 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++..+.+.+.+.|..++.++. +.|+|.=. |-|+++. ....++ +.|..+++||++.+.
T Consensus 47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~----------------a~~~I~-~~i~~~~~pV~t~v~ 104 (215)
T 2f6i_A 47 EINKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSIN----------------EGLAIL-DIFNYIKSDIQTISF 104 (215)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEe
Confidence 3778888999999988876555 66666421 1122221 123455 678899999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCC---Ccchhh------------ccccc--cCHHHHHHHHHcCC
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIP---GFGGTQ------------RLPRL--VGLSKAIEMMLLSK 167 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p---~~g~~~------------~l~r~--vG~~~a~~l~l~g~ 167 (539)
|.|..+|.-++++||. |++.+++.+++.....|... +..... .+.+. .......+++-.+.
T Consensus 105 g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~ 184 (215)
T 2f6i_A 105 GLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDY 184 (215)
T ss_dssp EEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTC
T ss_pred eEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCe
Confidence 9999999999999999 99999999987654332110 000000 00111 12344455555556
Q ss_pred CCCHHHHHHcCCcceecCc
Q 009256 168 SITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 168 ~~~a~eA~~~Glv~~vv~~ 186 (539)
.++++||+++||||+|.+.
T Consensus 185 ~lta~eA~e~GLiD~I~~~ 203 (215)
T 2f6i_A 185 YMNALEAKQYGIIDEVIET 203 (215)
T ss_dssp EECHHHHHHHTSCSEECCC
T ss_pred ecCHHHHHHCCCCCEecCC
Confidence 6799999999999999854
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-07 Score=84.61 Aligned_cols=137 Identities=21% Similarity=0.219 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++..+.+.+.+.|..++.++..+.|+|.=. |-|+++. ....++ +.|..+++||++.+.
T Consensus 35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~----------------~~~~I~-~~i~~~~~~V~t~~~ 93 (203)
T 3qwd_A 35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVT----------------AGFAIY-DTIQHIKPDVQTICI 93 (203)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHH----------------HHHHHH-HHHHHhcCCcEEEEe
Confidence 4889999999999999987766666666321 1222221 123455 668899999999999
Q ss_pred CccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhh------------------cccccc--CHHHHHHHHH
Q 009256 107 GLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLV--GLSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~v--G~~~a~~l~l 164 (539)
|.|.++|..|+++|| .|++.++++|......-|. .|-.. .+.+.- ......+++-
T Consensus 94 G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~ 170 (203)
T 3qwd_A 94 GMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA---QGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTD 170 (203)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSST---TTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHT
T ss_pred eeehhHHHHHHHcCCcCeEEEcCCceEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 999999999999999 6999999999876543221 11110 011111 2345566666
Q ss_pred cCCCCCHHHHHHcCCcceecCcc
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
....++|+||+++||||+|+...
T Consensus 171 ~d~~lta~EA~e~GliD~I~~~~ 193 (203)
T 3qwd_A 171 RDNFLTAEEAKEYGLIDEVMVPE 193 (203)
T ss_dssp SCCCEEHHHHHHHTSCSEECCCC
T ss_pred cCceecHHHHHHcCCcCEecCCc
Confidence 67889999999999999998665
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-08 Score=98.82 Aligned_cols=185 Identities=12% Similarity=0.041 Sum_probs=113.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC-CC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF-KD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 387 (539)
+||+|||+|.||+.+|..|+++|++|++|+|+++.++.. ...|... ..+. .++.+.+ .+
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~-----------~~~g~~~--------~~~~-~~~~~~~~~~ 62 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYY-----------TVPHAPA--------QDIV-VKGYEDVTNT 62 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEE-----------SSTTSCC--------EEEE-EEEGGGCCSC
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEE-----------ecCCeec--------ccee-cCchHhcCCC
Confidence 489999999999999999999999999999996542210 0111100 0111 1222444 88
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEec------cCCCCCCC-Ceeeeec
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAH------FFSPAHVM-PLLEIVR 460 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h------~~~p~~~~-~~vei~~ 460 (539)
+|+||.|++ ......+++++.++++++++|++...++...+. ++. .++++.. ...|-..- ....+..
T Consensus 63 ~D~vilavk--~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~---~~~-~~v~~g~~~~~a~~~~pg~v~~~~~~~~~ 136 (294)
T 3g17_A 63 FDVIIIAVK--THQLDAVIPHLTYLAHEDTLIILAQNGYGQLEH---IPF-KNVCQAVVYISGQKKGDVVTHFRDYQLRI 136 (294)
T ss_dssp EEEEEECSC--GGGHHHHGGGHHHHEEEEEEEEECCSSCCCGGG---CCC-SCEEECEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEeCC--ccCHHHHHHHHHHhhCCCCEEEEeccCcccHhh---CCC-CcEEEEEEEEEEEEcCCCEEEECCCEEec
Confidence 999999998 445678888899999999999998888877654 322 2333321 11111100 0001111
Q ss_pred CCCCcHHHHHHHHHHHHHcCceeEEEcCccc-----chhh-----------------------cchHHHHHHHHHHHHc-
Q 009256 461 TERTSAQVILDLMTVGKIIKKVPVVVGNCTG-----FAVN-----------------------RAFFPYSQSARLLVSL- 511 (539)
Q Consensus 461 ~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g-----~v~n-----------------------rl~~~~~~Ea~~l~~~- 511 (539)
+ +.+..+.+.++|..-|....+..|..+ ++.| .++...+.|+..+++.
T Consensus 137 ~---~~~~~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~ 213 (294)
T 3g17_A 137 Q---DNALTRQFRDLVQDSQIDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAE 213 (294)
T ss_dssp E---CSHHHHHHHHHTTTSSCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHT
T ss_pred C---ccHHHHHHHHHHHhCCCceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHc
Confidence 1 245667777777777777766666443 1222 1122445587777755
Q ss_pred CC--CHHHHHHHH
Q 009256 512 GV--DVFRIDSAI 522 (539)
Q Consensus 512 G~--~~~~id~a~ 522 (539)
|+ +++.+++.+
T Consensus 214 G~~l~~~~~~~~~ 226 (294)
T 3g17_A 214 GLNFSEQTVDTIM 226 (294)
T ss_dssp TCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 76 566666665
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-07 Score=91.81 Aligned_cols=125 Identities=10% Similarity=0.009 Sum_probs=82.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++ +. + .....++ +.++.
T Consensus 125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~---------------~-------------~~~~~~l~ell~~ 174 (303)
T 1qp8_A 125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG---------------P-------------WRFTNSLEEALRE 174 (303)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS---------------S-------------SCCBSCSHHHHTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc---------------C-------------cccCCCHHHHHhh
Confidence 4899999999999999999999999999999864 10 0 0112234 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccC---CCC------CCCCe
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFF---SPA------HVMPL 455 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~---~p~------~~~~~ 455 (539)
||+|+.++|.+.+.+..+-++..+.++++++++..+++-.+. .+...+. ..-.-.+...| .|. +..+.
T Consensus 175 aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~n 254 (303)
T 1qp8_A 175 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPN 254 (303)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTT
T ss_pred CCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCC
Confidence 999999999776544333346777899999988666553333 3444332 12233566655 332 12344
Q ss_pred eeeecCCC
Q 009256 456 LEIVRTER 463 (539)
Q Consensus 456 vei~~~~~ 463 (539)
+.++|+..
T Consensus 255 viltPH~~ 262 (303)
T 1qp8_A 255 VVATPWVA 262 (303)
T ss_dssp EEECCSCS
T ss_pred EEECCCcC
Confidence 55666644
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-07 Score=86.32 Aligned_cols=136 Identities=17% Similarity=0.159 Sum_probs=95.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++..+.+.+.+.|..++.++..+.|+|.=. |-|+++. ....++ +.|..+++||++.+.
T Consensus 34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~----------------a~~~I~-~~i~~~~~pV~~~v~ 92 (193)
T 1yg6_A 34 QVEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVIT----------------AGMSIY-DTMQFIKPDVSTICM 92 (193)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHH----------------HHHHHH-HHHHhcCCCEEEEEe
Confidence 3788899999999999887766777777421 1222221 123455 678899999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchh-h-----------------ccccccC--HHHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLVG--LSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~r~vG--~~~a~~l~l 164 (539)
|.|..+|.-++++||. |++.+++.++......|. .|-. . .+.+.-| .....+++-
T Consensus 93 g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~ 169 (193)
T 1yg6_A 93 GQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTE 169 (193)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTS
T ss_pred eeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 9999999999999999 999999998765543221 1110 0 0112222 334445554
Q ss_pred cCCCCCHHHHHHcCCcceecCc
Q 009256 165 LSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
.+..++++||+++||||+|.++
T Consensus 170 ~~~~~ta~eA~~~GliD~i~~~ 191 (193)
T 1yg6_A 170 RDRFLSAPEAVEYGLVDSILTH 191 (193)
T ss_dssp SCEEEEHHHHHHHTSSSEECCC
T ss_pred CCeEEcHHHHHHcCCCCEecCC
Confidence 5667799999999999999864
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-07 Score=91.75 Aligned_cols=93 Identities=19% Similarity=0.118 Sum_probs=67.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++. +... +.| +... ++ +.+++
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~~-~l~ell~~ 196 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAK-----------EVN-------------GKFV-DLETLLKE 196 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHH-----------HTT-------------CEEC-CHHHHHHH
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHh-----------hcC-------------cccc-CHHHHHhh
Confidence 48999999999999999999999999999999865 2221 111 1111 33 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
||+|+.++|.+.+.+..+-++..+.++++++++..+++-.
T Consensus 197 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~ 236 (307)
T 1wwk_A 197 SDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPV 236 (307)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGG
T ss_pred CCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcc
Confidence 9999999997665443222456677899999886666533
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-07 Score=91.07 Aligned_cols=103 Identities=27% Similarity=0.340 Sum_probs=69.2
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-ccCCc
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDY 382 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 382 (539)
+..+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+++.. .... ..+. .++++
T Consensus 3 ~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~-~~~~-------------~~v~i~~~~~ 68 (326)
T 3pqe_A 3 KHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGK-AFAP-------------QPVKTSYGTY 68 (326)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTG-GGSS-------------SCCEEEEECG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcc-cccc-------------CCeEEEeCcH
Confidence 345799999999999999999999997 99999999988776544433221 0000 0112 24456
Q ss_pred cCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 383 SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 383 ~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+++++||+||.++.. +..+.+.+.+.+.++.+ +++++..+
T Consensus 69 ~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlvvt 122 (326)
T 3pqe_A 69 EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGF-DGIFLVAT 122 (326)
T ss_dssp GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTC-CSEEEECS
T ss_pred HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEcC
Confidence 889999999998742 11334455566777765 55554434
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.8e-07 Score=90.70 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=67.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.||.++|..++..|+ +|+++|+++++++....++++.... .... ..+..++++++++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~-~~~~-----------~~v~~~~~~~a~~ 68 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPI-HGFD-----------TRVTGTNDYGPTE 68 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHH-HTCC-----------CEEEEESSSGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccc-cCCC-----------cEEEECCCHHHhC
Confidence 489999999999999999999887 9999999998766543333222110 0000 1233346679999
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+||+||.+.+. +..+.+.+.+.+.++. |+++++..+
T Consensus 69 ~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvt 118 (314)
T 3nep_X 69 DSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGS-PDSTIIVVA 118 (314)
T ss_dssp TCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTC-TTCEEEECC
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEecC
Confidence 99999998743 1233445555677775 455554434
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.45 E-value=6e-07 Score=94.09 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=79.3
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|.+ |.++|..|+.. +.+|++||+++++++...+ +...+...... ..+++.++|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~-~~~~~l~~~~~-----------~~~I~~t~D~ 96 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAG-ACDVFIREKAP-----------DIEFAATTDP 96 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHH-HHHHHHHHHCT-----------TSEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHH-HHHHHhccCCC-----------CCEEEEECCH
Confidence 48999999998 55578888887 6799999999998877543 22222111111 1357777887
Q ss_pred -cCCCCcCEEEEcccCCh----------------------------------hHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 383 -SEFKDVDMVIEAVIESV----------------------------------PLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~----------------------------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
+++++||+||.++|... .+..++.+++.++++ +++++..|....
T Consensus 97 ~eal~~AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P-~A~ii~~TNPvd 175 (472)
T 1u8x_X 97 EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSP-DAWMLNYSNPAA 175 (472)
T ss_dssp HHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECCSCHH
T ss_pred HHHHcCCCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCC-CeEEEEeCCcHH
Confidence 88999999999997521 235566677888874 555554443333
Q ss_pred hH-HHhhccCCCCcEEEe
Q 009256 428 LN-IVGEKTSSQDRIIGA 444 (539)
Q Consensus 428 ~~-~i~~~~~~~~r~vg~ 444 (539)
+- ..........|++|+
T Consensus 176 i~T~~~~k~~p~~rViG~ 193 (472)
T 1u8x_X 176 IVAEATRRLRPNSKILNI 193 (472)
T ss_dssp HHHHHHHHHSTTCCEEEC
T ss_pred HHHHHHHHhCCCCCEEEe
Confidence 21 222222333477775
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-07 Score=95.67 Aligned_cols=111 Identities=16% Similarity=0.096 Sum_probs=67.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||++++.. .......++ +.+++
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~-----------------------------~~~~~~~sl~ell~~ 222 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-----------------------------VDWIAHQSPVDLARD 222 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT-----------------------------SCCEECSSHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc-----------------------------cCceecCCHHHHHhc
Confidence 589999999999999999999999999999987530 011223344 66889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCCC-CcEEEeccCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQ-DRIIGAHFFS 448 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~-~r~vg~h~~~ 448 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-.+. .+...+... -...++..|.
T Consensus 223 aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~ 286 (340)
T 4dgs_A 223 SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFV 286 (340)
T ss_dssp CSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCS
T ss_pred CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcC
Confidence 999999999777665555567778899999988666554443 344444322 2344555443
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=98.44 E-value=7.6e-08 Score=97.17 Aligned_cols=103 Identities=11% Similarity=0.047 Sum_probs=73.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||+++...+...+ ..+....++ +.+++
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~------------------------~g~~~~~~l~ell~~ 220 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKE------------------------TGAKFVEDLNEMLPK 220 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHH------------------------HCCEECSCHHHHGGG
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHh------------------------CCCeEcCCHHHHHhc
Confidence 48999999999999999999999999999998644333211 112333445 66889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 221 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 270 (351)
T 3jtm_A 221 CDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAV 270 (351)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHH
Confidence 99999999976655444446677789999998865555333 3444444
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.43 E-value=3e-08 Score=99.09 Aligned_cols=113 Identities=9% Similarity=0.043 Sum_probs=77.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||++++..+.. .......++ +.+++
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~ 191 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHF--------------------------HETVAFTATADALAT 191 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC--------------------------SEEEEGGGCHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhH--------------------------hhccccCCHHHHHhh
Confidence 589999999999999999999999999999986532211 011112234 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCC-CCcEEEeccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF 447 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~-~~r~vg~h~~ 447 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-.+ ..+...+.. .-...++..|
T Consensus 192 aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~ 254 (324)
T 3evt_A 192 ANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVT 254 (324)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSC
T ss_pred CCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCC
Confidence 99999999977765554446677889999998866555333 345444432 2233455544
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=3.9e-07 Score=91.17 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=71.6
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
.+.+||+|||+|.||.++|..++..|+ +|+++|+++++++....++.+.. .... ...+..+++++
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~----~~~~---------~~~i~~~~d~~ 83 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGS----LFLK---------TPKIVSSKDYS 83 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTG----GGCS---------CCEEEECSSGG
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhh----hccC---------CCeEEEcCCHH
Confidence 345799999999999999999999998 99999999887766544432211 0000 02344566788
Q ss_pred CCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 384 EFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 384 ~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++++||+||.+... +..+.+++.+.+.++++ +++++..+
T Consensus 84 ~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~vlvvt 136 (331)
T 4aj2_A 84 VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP-QCKLLIVS 136 (331)
T ss_dssp GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TCEEEECS
T ss_pred HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEec
Confidence 89999999988621 23455566677888854 45554333
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.4e-07 Score=86.96 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++.++...+...|..++.++..+.|+|.=. |-|+++. ....++ +.|...++||++.+.
T Consensus 90 ~I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~----------------ag~aIy-d~I~~~k~pV~t~v~ 148 (277)
T 1tg6_A 90 PIDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVT----------------AGLAIY-DTMQYILNPICTWCV 148 (277)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSCSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHhcCCCEEEEEc
Confidence 3788899999999988866555677777421 1122221 123455 678889999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchh-h-----------------cccccc--CHHHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGT-Q-----------------RLPRLV--GLSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~r~v--G~~~a~~l~l 164 (539)
|.|..+|.-|+++||. |++.+++.++.....-|. .|-. . .+...- ......+++-
T Consensus 149 G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~---~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~d 225 (277)
T 1tg6_A 149 GQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA---RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAME 225 (277)
T ss_dssp EEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHS
T ss_pred cEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 9999999999999999 999999998875543222 1110 0 011111 2344555555
Q ss_pred cCCCCCHHHHHHcCCcceecCcc
Q 009256 165 LSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
.+..++++||+++||||+|....
T Consensus 226 rd~~lta~EAle~GLID~I~~~~ 248 (277)
T 1tg6_A 226 RDRYMSPMEAQEFGILDKVLVHP 248 (277)
T ss_dssp SCEEECHHHHHHHTSCSEECSSC
T ss_pred cCcccCHHHHHHCCCCCEecCcc
Confidence 56778999999999999998553
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.41 E-value=1e-07 Score=95.97 Aligned_cols=101 Identities=14% Similarity=0.028 Sum_probs=73.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||+++...+.. .......++ +.+++
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~g~~~~~~l~ell~~ 227 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE--------------------------EGAIYHDTLDSLLGA 227 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH--------------------------TTCEECSSHHHHHHT
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh--------------------------cCCeEeCCHHHHHhh
Confidence 589999999999999999999999999999986432221 012223345 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|.+.+....+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 228 sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 277 (345)
T 4g2n_A 228 SDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEAL 277 (345)
T ss_dssp CSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence 99999999977665544445677789999998865555333 3444444
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.8e-08 Score=96.46 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=69.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||+++.. +.. .+. .+....++ +.+++
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-----------~~~-------------g~~~~~~l~ell~~ 215 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERA-----------RAD-------------GFAVAESKDALFEQ 215 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHH-----------HHT-------------TCEECSSHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHH-----------Hhc-------------CceEeCCHHHHHhh
Confidence 48999999999999999999999999999998632 221 111 12333455 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
||+|+.++|...+.+..+-++..+.++++++++..+.+-.
T Consensus 216 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~ 255 (352)
T 3gg9_A 216 SDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAEL 255 (352)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGG
T ss_pred CCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchh
Confidence 9999999997766554444567778999999886555433
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-07 Score=98.91 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=65.9
Q ss_pred CCCcHHHHHHHHHHHHHcCceeEEEcCcccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhcc
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPVVVGNCTGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEG 535 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v~v~~~~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~ 535 (539)
..+++++.+.+..+...+|+.++.+ .+|+++||++.+++|||..++++|+ +++|||.+| .|+|||+ |||+++
T Consensus 330 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~g~i~~Rll~~~~nEa~~~l~eGIa~~~~dID~a~~~G~G~p~~~gGP~~~~ 407 (463)
T 1zcj_A 330 HKPDPWLSTFLSQYREVHHIEQRTI--SKEEILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYA 407 (463)
T ss_dssp EEECHHHHHHHHHHHHHTTCCCCCC--CHHHHHHHHHHHHHHHHHHHHHTTSBSCHHHHHHHHHHHSCCCGGGCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCcccC--CHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCCCCCCcChHHHH
Confidence 3468899998888888888665543 3799999999999999999999997 599999999 8999998 999999
Q ss_pred ccCC
Q 009256 536 GCWS 539 (539)
Q Consensus 536 d~~~ 539 (539)
|.++
T Consensus 408 D~~G 411 (463)
T 1zcj_A 408 ASVG 411 (463)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 9753
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-06 Score=89.01 Aligned_cols=200 Identities=18% Similarity=0.204 Sum_probs=144.1
Q ss_pred CCcEEEEEe-cCcEEEEEeCCCCC--------------CCCCHHHHHHHHHHHHHH-hcCCCceEEEEecCCCCcccCCC
Q 009256 3 APRVTMEVG-NDGVAIITLINPPV--------------NALAIPIVAGLKDKFEEA-TSRDDVKAIVLTGNGGRFSGGFD 66 (539)
Q Consensus 3 ~~~v~~~~~-~~~v~~i~l~~p~~--------------Nal~~~~~~~l~~~~~~~-~~d~~v~~vvl~g~g~~F~aG~D 66 (539)
|..+...++ ..+++.++...|.. +.....|-.||.+++-.+ -++.++.-.++...|+.
T Consensus 265 y~~~~~ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~------ 338 (556)
T 2w3p_A 265 YKTLDVTIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA------ 338 (556)
T ss_dssp ETTEEEEEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH------
Confidence 444555553 45789999987631 233355788886666555 45678888888766532
Q ss_pred chhhhhh------c-CCCcccccchHHHHHHHHHHHhCCCcEEEEE-cCccccch-hHhhhccCEEEeeC-------Cce
Q 009256 67 INVFQKV------H-GAGDVSLMPDVSVELVVNLIEDCKKPIVAAV-EGLALGGG-LELAMGCHARIAAP-------KTQ 130 (539)
Q Consensus 67 l~~~~~~------~-~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav-~G~a~GgG-~~lal~~D~~ia~~-------~a~ 130 (539)
..+... . +..-+.+...+..+.+ .+|.-...-++|.| .|.|+.|- +||+++||..++-+ .+.
T Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~ 416 (556)
T 2w3p_A 339 -RHLLAADASLMQHKDHWFVRETIGLLRRTL-ARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPA 416 (556)
T ss_dssp -HHHHHHHHHHHHTTTSHHHHHHHHHHHHHH-HHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCC
T ss_pred -HHHhhhHHHHHhccchHHHHHHHHHHHHHH-HHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCce
Confidence 222211 1 1111233344555666 66778888899999 79998776 59999999999973 378
Q ss_pred EeCCcccCCCCCCcchhhccccc-cCHHHHHHH--HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchh
Q 009256 131 LGLPELTLGVIPGFGGTQRLPRL-VGLSKAIEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPW 207 (539)
Q Consensus 131 f~~pe~~~Gl~p~~g~~~~l~r~-vG~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~ 207 (539)
+.+.+.++|..|-..+..||.++ .|..-..+. ...|+++++++|.++|||+...++-+.+++++-..++-++.||.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (556)
T 2w3p_A 417 ITLSEVNFGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDA 496 (556)
T ss_dssp EECCGGGGTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHH
T ss_pred eEeeccccCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcch
Confidence 99999999999988888888755 344433332 235999999999999999999888899999999999999999987
Q ss_pred hhh
Q 009256 208 IRS 210 (539)
Q Consensus 208 ~~~ 210 (539)
+..
T Consensus 497 ~~~ 499 (556)
T 2w3p_A 497 LTG 499 (556)
T ss_dssp HHH
T ss_pred hcc
Confidence 753
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-07 Score=93.79 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=69.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||+++.... .......++ +.++.
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~----------------------------~~~~~~~sl~ell~~ 208 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY----------------------------GNVKPAASLDELLKT 208 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB----------------------------TTBEECSSHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc----------------------------cCcEecCCHHHHHhh
Confidence 5899999999999999999999999999998743100 011223344 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|...+.+.-+-++....++++++++..+.+-.+ ..+...+.
T Consensus 209 aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~ 259 (416)
T 3k5p_A 209 SDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQ 259 (416)
T ss_dssp CSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHH
Confidence 99999999977665444435667789999999866655444 34555443
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.5e-07 Score=92.11 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=55.3
Q ss_pred ceEEEEcCCCC--cHHHHHHHHH----CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLM--GSGIATAHIL----NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~m--G~~iA~~l~~----~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|.| |.+++..++. .| +|++||+++++++..... . ..... ...+++.++|+
T Consensus 6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~-~----~~l~~----------~~~~I~~TtD~ 69 (450)
T 3fef_A 6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVI-G----NHSGN----------GRWRYEAVSTL 69 (450)
T ss_dssp EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHH-H----TTSTT----------SCEEEEEESSH
T ss_pred CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHH-H----HHHhc----------cCCeEEEECCH
Confidence 59999999998 5789988886 57 999999999988775321 1 11111 12568888998
Q ss_pred -cCCCCcCEEEEccc
Q 009256 383 -SEFKDVDMVIEAVI 396 (539)
Q Consensus 383 -~~~~~aDlVi~avp 396 (539)
+++++||+||++++
T Consensus 70 ~eAl~dADfVI~air 84 (450)
T 3fef_A 70 KKALSAADIVIISIL 84 (450)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred HHHhcCCCEEEeccc
Confidence 78999999999995
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.2e-07 Score=89.80 Aligned_cols=124 Identities=16% Similarity=0.107 Sum_probs=80.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++..+ +. ..++ +.+++
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------------------------~~-~~~l~ell~~ 193 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------------------------------YP-FLSLEELLKE 193 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------------------------------SC-BCCHHHHHHH
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------------------------------cc-cCCHHHHHhh
Confidence 5899999999999999999999999999999875311 01 1233 55788
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCC--CC------CCCCeee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFS--PA------HVMPLLE 457 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~--p~------~~~~~ve 457 (539)
||+|+.++|.+.+....+-++..+.++++++++..+++-.+. .+...+...-.-.++..|. |. +..+.+.
T Consensus 194 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~~~eP~~~~~~L~~~~nvi 273 (311)
T 2cuk_A 194 ADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVTDPEPLPPGHPLYALPNAV 273 (311)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSCSSSSCCTTSGGGGCTTEE
T ss_pred CCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeCCCCCCCCCChhhhCCCEE
Confidence 999999999776543322234556789999888666654333 4555554211223455443 21 2234455
Q ss_pred eecCCC
Q 009256 458 IVRTER 463 (539)
Q Consensus 458 i~~~~~ 463 (539)
++|+..
T Consensus 274 ltPh~~ 279 (311)
T 2cuk_A 274 ITPHIG 279 (311)
T ss_dssp ECCSCT
T ss_pred ECCcCC
Confidence 666543
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.35 E-value=8e-07 Score=89.95 Aligned_cols=137 Identities=7% Similarity=0.011 Sum_probs=85.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||+++.. +... ..| +.. .++ +.++.
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~ell~~ 230 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLE-----------ENG-------------VEP-ASLEDVLTK 230 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHH-----------HTT-------------CEE-CCHHHHHHS
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHh-----------hcC-------------eee-CCHHHHHhc
Confidence 58999999999999999999999999999998532 2111 111 111 234 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCCCCcEEEeccCC--C------CCCCCeee
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFS--P------AHVMPLLE 457 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~~~r~vg~h~~~--p------~~~~~~ve 457 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-.+ ..+...+....-..++..|. | -+..+.+.
T Consensus 231 aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nvi 310 (365)
T 4hy3_A 231 SDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGFI 310 (365)
T ss_dssp CSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTEE
T ss_pred CCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCEE
Confidence 99999999987766555546677889999998865554333 34544443222114554332 2 12334556
Q ss_pred eecCCC-CcHHHHHH
Q 009256 458 IVRTER-TSAQVILD 471 (539)
Q Consensus 458 i~~~~~-t~~e~~~~ 471 (539)
+.|+-. .+.++.++
T Consensus 311 lTPHia~~t~e~~~~ 325 (365)
T 4hy3_A 311 RSAHRAGALDSAFKK 325 (365)
T ss_dssp ECCSCSSCCHHHHHH
T ss_pred ECCccccCHHHHHHH
Confidence 666532 24444443
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-08 Score=99.18 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=70.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||+++...+.. .......++ +.+++
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~ 194 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--------------------------DQVYQLPALNKMLAQ 194 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--------------------------SEEECGGGHHHHHHT
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--------------------------hcccccCCHHHHHhh
Confidence 489999999999999999999999999999986321110 011112334 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 195 aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 244 (324)
T 3hg7_A 195 ADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTAL 244 (324)
T ss_dssp CSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHH
Confidence 99999999976654433334556678999998866655443 3444444
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-08 Score=97.69 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=71.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||++++..+.. .......++ +.+++
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--------------------------~~~~~~~~l~ell~~ 193 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGV--------------------------ESYVGREELRAFLNQ 193 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTC--------------------------EEEESHHHHHHHHHT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhh--------------------------hhhcccCCHHHHHhh
Confidence 489999999999999999999999999999987532111 000001233 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|...+...-+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 194 aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL 243 (315)
T 3pp8_A 194 TRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAAL 243 (315)
T ss_dssp CSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHH
Confidence 99999999977665544436677789999998866555333 3444444
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.6e-07 Score=92.72 Aligned_cols=101 Identities=9% Similarity=0.013 Sum_probs=71.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++. +.+. +.| +.. .++ +.+++
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~-----------~~g-------------~~~-~~l~ell~~ 219 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSA-----------SFG-------------VQQ-LPLEEIWPL 219 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhh-----------hcC-------------cee-CCHHHHHhc
Confidence 48999999999999999999999999999998754 2211 111 111 234 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~ 435 (539)
||+|+.++|.+.+.+..+-++..+.++++++++..+++-.+. .+...+
T Consensus 220 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL 269 (335)
T 2g76_A 220 CDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRAL 269 (335)
T ss_dssp CSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHH
Confidence 999999999876554433356677899999988666654443 444444
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-06 Score=84.70 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..|+.++. ++.+||++++..+.-...+.+... ..... ..+..++++++++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~-~~~~~-----------~~i~~~~d~~~~~ 68 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GIDKY-----------PKIVGGADYSLLK 68 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG-GGTCC-----------CEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc-cCCCC-----------CeEecCCCHHHhC
Confidence 489999999999999999998875 899999998776544333332110 01000 2345566789999
Q ss_pred CcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 387 ~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+||+||.+.. .+..+.+.+.+++.++.++. +++..|..
T Consensus 69 ~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~a-ivlvvsNP 120 (294)
T 2x0j_A 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPES-KILVVTNP 120 (294)
T ss_dssp TCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTC-EEEECSSS
T ss_pred CCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCce-EEEEecCc
Confidence 9999998862 13445566667787777654 44444433
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.9e-07 Score=92.36 Aligned_cols=102 Identities=16% Similarity=0.097 Sum_probs=72.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||+++...+...+ . .+... ++ +.++.
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~-~l~ell~~ 200 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQR-----------L-------------GLRQV-ACSELFAS 200 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHH-----------H-------------TEEEC-CHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHh-----------c-------------CceeC-CHHHHHhh
Confidence 58999999999999999999999999999998743332211 0 11112 34 56788
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|.+.+....+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 201 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL 250 (330)
T 4e5n_A 201 SDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAAL 250 (330)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHH
Confidence 99999999976665544446677889999999866655333 3444443
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=85.79 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=69.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.+++..++..|+ +|+++|+++++++.....+.+.. ...... -.++. ++.++++
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~-~~~~~~-----------~~v~~-~~~~a~~ 73 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHAT-PYSPTT-----------VRVKA-GEYSDCH 73 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHG-GGSSSC-----------CEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhh-hhcCCC-----------eEEEe-CCHHHhC
Confidence 589999999999999999998885 99999999887764333332221 111000 12332 4458899
Q ss_pred CcCEEEEcccCC--h------------hHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 387 DVDMVIEAVIES--V------------PLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 387 ~aDlVi~avpe~--~------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
+||+||.+++.. + .+.+++.+.+.++. |+++++.. +.|+..+
T Consensus 74 ~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~ 129 (317)
T 3d0o_A 74 DADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLVA--TNPVDIL 129 (317)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHHHH
T ss_pred CCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHH
Confidence 999999998432 1 34555666677775 55555443 3455433
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-07 Score=95.22 Aligned_cols=104 Identities=10% Similarity=-0.030 Sum_probs=72.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||+++...+...+ . .+....++ +.++.
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~-----------~-------------G~~~~~~l~ell~~ 247 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE-----------L-------------NLTWHATREDMYPV 247 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH-----------H-------------TCEECSSHHHHGGG
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhh-----------c-------------CceecCCHHHHHhc
Confidence 48999999999999999999999999999998644332211 0 12222334 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~ 436 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-.+. .+...+.
T Consensus 248 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~ 298 (393)
T 2nac_A 248 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 298 (393)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHH
Confidence 999999999766543332245667889999988666654333 4555443
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-07 Score=92.63 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=71.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++... .. +.| .... ++ +.+++
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~-----------~~g-------------~~~~-~l~ell~~ 196 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK-AE-----------KIN-------------AKAV-SLEELLKN 196 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-HH-----------HTT-------------CEEC-CHHHHHHH
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH-HH-----------hcC-------------ceec-CHHHHHhh
Confidence 4899999999999999999999999999999986532 11 111 1111 34 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~ 436 (539)
||+|+.++|...+....+-++..+.++++++++..+++-.+. .+...+.
T Consensus 197 aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~ 247 (313)
T 2ekl_A 197 SDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIK 247 (313)
T ss_dssp CSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHH
T ss_pred CCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH
Confidence 999999999766543222245566789999888766654333 4455443
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-07 Score=93.55 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||..+|..+...|++|++||++++... . . ..| .....++ +.++.
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~-~----------~~g-------------~~~~~~l~ell~~ 223 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-E-R----------ALG-------------LQRVSTLQDLLFH 223 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-H-H----------HHT-------------CEECSSHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-H-h----------hcC-------------CeecCCHHHHHhc
Confidence 4799999999999999999999999999998865311 1 0 001 1222234 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|.+.+.+..+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL 273 (347)
T 1mx3_A 224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQAL 273 (347)
T ss_dssp CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHH
Confidence 99999999976554433335566788999998866665443 3444443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-07 Score=94.67 Aligned_cols=103 Identities=17% Similarity=0.073 Sum_probs=72.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCe-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||.++|..+...|++ |++||+++...+...+ .| +....++ +.++
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~l~ell~ 220 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEK-----------VG-------------ARRVENIEELVA 220 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHH-----------TT-------------EEECSSHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHh-----------cC-------------cEecCCHHHHHh
Confidence 4899999999999999999999997 9999998754333211 11 2222344 5678
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhcc
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT 435 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~ 435 (539)
+||+|+.++|...+....+-++..+.++++++++..+.+-. ...+...+
T Consensus 221 ~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL 271 (364)
T 2j6i_A 221 QADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAAL 271 (364)
T ss_dssp TCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred cCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHH
Confidence 99999999997765444333556678899998886665533 33444444
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=8.6e-07 Score=88.42 Aligned_cols=90 Identities=11% Similarity=0.110 Sum_probs=65.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.||..++..|++. |+ +|++||+++++.+.+.+.+ + ..+...+++ +.+
T Consensus 136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~----------~-----------~~~~~~~~~~e~v 194 (312)
T 2i99_A 136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV----------Q-----------GEVRVCSSVQEAV 194 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS----------S-----------SCCEECSSHHHHH
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHh----------h-----------CCeEEeCCHHHHH
Confidence 4799999999999999999876 76 9999999999887764321 1 013334555 667
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++||+||.|+|... .++.. +.++++++|++.++.
T Consensus 195 ~~aDiVi~atp~~~----~v~~~--~~l~~g~~vi~~g~~ 228 (312)
T 2i99_A 195 AGADVIITVTLATE----PILFG--EWVKPGAHINAVGAS 228 (312)
T ss_dssp TTCSEEEECCCCSS----CCBCG--GGSCTTCEEEECCCC
T ss_pred hcCCEEEEEeCCCC----cccCH--HHcCCCcEEEeCCCC
Confidence 89999999998532 22222 567888888765443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.5e-07 Score=91.20 Aligned_cols=100 Identities=13% Similarity=0.005 Sum_probs=71.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.++|..+...|++|++||++++.. + +. ......++ +.+++
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~------------------------~~~~~~~l~ell~~ 199 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EK------------------------KGYYVDSLDDLYKQ 199 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HH------------------------TTCBCSCHHHHHHH
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hh------------------------hCeecCCHHHHHhh
Confidence 489999999999999999999999999999987643 1 10 01122234 55788
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|...+.+..+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 200 aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL 249 (333)
T 1j4a_A 200 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGL 249 (333)
T ss_dssp CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHH
Confidence 99999999977664433324566778999988866655333 3454444
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.8e-07 Score=93.16 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=71.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||..+|..+...|++|++||+++... . +......++ +.++.
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----------------~------------~~~~~~~~l~ell~~ 197 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----------------L------------GNATQVQHLSDLLNM 197 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----------------C------------TTCEECSCHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----------------c------------CCceecCCHHHHHhc
Confidence 489999999999999999999999999999975320 0 112223344 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~ 435 (539)
||+|+.++|...+.+.-+-++..+.++++++++..+.+-.+. .+...+
T Consensus 198 aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL 247 (404)
T 1sc6_A 198 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADAL 247 (404)
T ss_dssp CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHH
T ss_pred CCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHH
Confidence 999999999877655433355667899999988666554443 444444
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-06 Score=81.01 Aligned_cols=139 Identities=22% Similarity=0.191 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++..+.+.+...|..++.++..+.|+|.=. |-|+++. ....++ +.|..+++||++.+.
T Consensus 38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~----------------~~~~I~-~~i~~~~~~v~t~~~ 96 (201)
T 3p2l_A 38 EVNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVT----------------AGMGVY-DTMQFIKPDVSTICI 96 (201)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHH----------------HHHHHH-HHHHHSSSCEEEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHH----------------HHHHHH-HHHHHhCCCeEEEEc
Confidence 4888999999999999887666666666421 1223221 123455 678899999999999
Q ss_pred CccccchhHhhhccCE--EEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHHHHHHHH
Q 009256 107 GLALGGGLELAMGCHA--RIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSKAIEMML 164 (539)
Q Consensus 107 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~a~~l~l 164 (539)
|.|.++|.-++++||- |++.+++++......-|. .|-.. .+.+.-| .....+++-
T Consensus 97 G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~ 173 (201)
T 3p2l_A 97 GLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTD 173 (201)
T ss_dssp EEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTS
T ss_pred CEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhh
Confidence 9999999999999998 999999998766543221 11110 0111112 344445555
Q ss_pred cCCCCCHHHHHHcCCcceecCc-chH
Q 009256 165 LSKSITSEEGWKLGLIDAVVTS-EEL 189 (539)
Q Consensus 165 ~g~~~~a~eA~~~Glv~~vv~~-~~l 189 (539)
....++|+||+++||||+|++. ++|
T Consensus 174 ~~~~lta~EA~e~GliD~I~~~~~~l 199 (201)
T 3p2l_A 174 RDNFMMADEAKAYGLIDHVIESREAI 199 (201)
T ss_dssp SCEEEEHHHHHHHTSCSEECCCSCC-
T ss_pred cCeeecHHHHHHcCCccEecCCHHHh
Confidence 5566799999999999999854 444
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=8.4e-07 Score=88.66 Aligned_cols=119 Identities=23% Similarity=0.322 Sum_probs=71.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCccC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~ 384 (539)
.+||+|||+|.+|.+++..++..|+ +|+++|+++++++.....+ .... ... .-.++. +++++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl--------~~~~~~~~------~~~i~~-~~~~a 71 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDI--------NHGLPFMG------QMSLYA-GDYSD 71 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHH--------TTSCCCTT------CEEEC---CGGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHH--------HHhHHhcC------CeEEEE-CCHHH
Confidence 3589999999999999999999998 9999999987765422221 1110 000 012332 45688
Q ss_pred CCCcCEEEEcccCCh--------------hHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhh----ccC-CCCcEEEe
Q 009256 385 FKDVDMVIEAVIESV--------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGE----KTS-SQDRIIGA 444 (539)
Q Consensus 385 ~~~aDlVi~avpe~~--------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~----~~~-~~~r~vg~ 444 (539)
+++||+||.+++... .+.+++.+.+.++. |+++++.. +.|+..+.. ... .+.|++|+
T Consensus 72 ~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~--tNPv~~~~~~~~k~s~~p~~rviG~ 147 (318)
T 1y6j_A 72 VKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVV--SNPVDIITYMIQKWSGLPVGKVIGS 147 (318)
T ss_dssp GTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEEC--SSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred hCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEEe--cCcHHHHHHHHHHHcCCCHHHEecc
Confidence 999999999986422 12356667788886 45555443 345443322 212 34577776
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.2e-07 Score=93.41 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=71.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||++++. . .+ ...... ++ +.+++
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~------------~~-------------~~~~~~-~l~ell~~ 200 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP--E------------FE-------------PFLTYT-DFDTVLKE 200 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG--G------------GT-------------TTCEEC-CHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh--h------------hh-------------cccccc-CHHHHHhc
Confidence 58999999999999999999999999999998753 0 00 011112 44 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-.+ ..+...+
T Consensus 201 aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL 250 (343)
T 2yq5_A 201 ADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKAL 250 (343)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHH
Confidence 99999999976665444445667789999998866555333 3444443
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.23 E-value=3.9e-06 Score=87.51 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=78.8
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC-----CCeEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 309 RKVAVIGGGLM-GSGIATAHILN-----NIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~-----G~~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
+||+|||+|.+ |.+++..|+.+ +.+|++||+++ ++++.... +...+.. ..+ .+ ..++.++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~-~~~~~~~--~~~-~~--------~~i~~t~ 75 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGA-LAKRMVE--KAG-VP--------IEIHLTL 75 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHH-HHHHHHH--HTT-CC--------CEEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHH-HHHHHHh--hcC-CC--------cEEEEeC
Confidence 58999999999 77888888874 66999999999 88777432 2222211 111 11 3566677
Q ss_pred Cc-cCCCCcCEEEEcccCCh----------------------------------hHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 381 DY-SEFKDVDMVIEAVIESV----------------------------------PLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe~~----------------------------------~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
|+ +++++||+||.+++... .+..++.+.+.++++ +++++..|..
T Consensus 76 D~~eal~gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P-~a~ii~~tNP 154 (450)
T 1s6y_A 76 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCP-DAWLINFTNP 154 (450)
T ss_dssp CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEECSSS
T ss_pred CHHHHhCCCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCC-CeEEEEeCCc
Confidence 87 88999999999997421 245566777888875 5555533433
Q ss_pred CCh-HHHhhccCCCCcEEEe
Q 009256 426 IDL-NIVGEKTSSQDRIIGA 444 (539)
Q Consensus 426 ~~~-~~i~~~~~~~~r~vg~ 444 (539)
..+ +..........|++|+
T Consensus 155 vdivT~a~~k~~p~~rViG~ 174 (450)
T 1s6y_A 155 AGMVTEAVLRYTKQEKVVGL 174 (450)
T ss_dssp HHHHHHHHHHHCCCCCEEEC
T ss_pred HHHHHHHHHHhCCCCCEEEe
Confidence 332 2222223333477776
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.7e-06 Score=71.18 Aligned_cols=105 Identities=13% Similarity=0.044 Sum_probs=64.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+++|.|+|+|.+|..++..|.+.|++|+++|++++.++.+.+.- ...+ .+-. +++... . ..+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~----~~~~-~gd~~~~~~l~----~-------~~~~ 69 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEG----FDAV-IADPTDESFYR----S-------LDLE 69 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTT----CEEE-ECCTTCHHHHH----H-------SCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC----CcEE-ECCCCCHHHHH----h-------CCcc
Confidence 56899999999999999999999999999999998877653310 0000 0111 110000 0 1257
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 430 (539)
++|+||.++++ .+....+...+.+.. ...+++...+......
T Consensus 70 ~~d~vi~~~~~-~~~n~~~~~~a~~~~-~~~iia~~~~~~~~~~ 111 (141)
T 3llv_A 70 GVSAVLITGSD-DEFNLKILKALRSVS-DVYAIVRVSSPKKKEE 111 (141)
T ss_dssp TCSEEEECCSC-HHHHHHHHHHHHHHC-CCCEEEEESCGGGHHH
T ss_pred cCCEEEEecCC-HHHHHHHHHHHHHhC-CceEEEEEcChhHHHH
Confidence 89999999984 333333444444444 5556655444433333
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.1e-05 Score=86.00 Aligned_cols=161 Identities=15% Similarity=0.067 Sum_probs=109.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.-++.+...+.+..+++.+.+.. +-+|.|.- |.|+.+.+-...-.. ...+...+... ..+....+|+|++
T Consensus 118 gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGArlqe~~~~l~~--~~~~g~i~~~~--~~ls~~giP~Isv 187 (587)
T 1pix_A 118 AGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYPN--RRGGGTPFFRN--AELNQLGIPVIVG 187 (587)
T ss_dssp TTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSSS--TTSTTHHHHHH--HHHHHTTCCEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEe-----CCCCCccccchhccc--cccHHHHHHHH--HHHhCCCCCEEEE
Confidence 37888999999999999887663 55666654 456666553321110 01223333333 3478889999999
Q ss_pred EcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHH-HcCCCCCHHH-------HH
Q 009256 105 VEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM-LLSKSITSEE-------GW 175 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~-l~g~~~~a~e-------A~ 175 (539)
|.|.|.|||... ..||++|++++ +.+++.-.. ++-. ..-.-.++..+|.+++ .+|+.+++++ +.
T Consensus 188 v~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~--vi~~----~~~~~~~d~~~A~el~~~tge~v~~e~lgga~~h~~ 260 (587)
T 1pix_A 188 IYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAG--IMGG----MNPKGHVDLEYANEIADMVDRTGKTEPPGAVDIHYT 260 (587)
T ss_dssp ECSEEETHHHHH-HHSSSEEEEETTCEEESCCCT--TCCS----CCSSSSCCHHHHHHHHHHHHTTCCCCCSSBHHHHTT
T ss_pred EecCCcHHHHHH-HhcCceEEecCCcEEEecCHH--HHhh----hccccccchhHHHHHHHHhCCccChhhcccHHHHHh
Confidence 999999999999 99999988864 888873221 1110 0011227899999999 9999988765 23
Q ss_pred HcCCcceecCcchHHHHHHHHHHHHHhcCc
Q 009256 176 KLGLIDAVVTSEELLKVSRLWALDIAARRK 205 (539)
Q Consensus 176 ~~Glv~~vv~~~~l~~~a~~~a~~la~~~~ 205 (539)
+.|++|.++++++ .+.+.++++.+.-|
T Consensus 261 ~~GvvD~vv~~e~---~a~~~~r~~ls~lp 287 (587)
T 1pix_A 261 ETGFMREVYASEE---GVLEGIKKYVGMLP 287 (587)
T ss_dssp TSCCSCEEESSHH---HHHHHHHHHHHTSC
T ss_pred hcCceeEecCCHH---HHHHHHHHHHHhCC
Confidence 6999999998876 44555555555543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=69.50 Aligned_cols=97 Identities=20% Similarity=0.184 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|+|+|.+|..++..|.+.|++|+++|++++..+.+.+.. ....-.+.. +.... ....+.+
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l-----------~~~~~~~ 69 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTL-----------EDAGIED 69 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHH-----------HHTTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHH-----------HHcCccc
Confidence 4799999999999999999999999999999998766543210 000000100 00000 0023678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
+|+||.++|.+.. ...+..+.+.++++.+++..
T Consensus 70 ~d~vi~~~~~~~~--~~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 70 ADMYIAVTGKEEV--NLMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp CSEEEECCSCHHH--HHHHHHHHHHTTCCCEEEEC
T ss_pred CCEEEEeeCCchH--HHHHHHHHHHcCCCEEEEEe
Confidence 9999999985432 23334455556766766543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.1e-06 Score=82.86 Aligned_cols=104 Identities=20% Similarity=0.222 Sum_probs=68.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.+++..++..++ +|+++|+++++++.....+.+.. .... + -.++ ..++++++
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~~~~-~--------~~v~-~~~~~a~~ 71 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQ----AFTA-P--------KKIY-SGEYSDCK 71 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGG----GGSC-C--------CEEE-ECCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHH----HhcC-C--------eEEE-ECCHHHhC
Confidence 589999999999999999998887 99999999988775433332111 1000 0 1122 24558899
Q ss_pred CcCEEEEcccCCh--------------hHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 387 DVDMVIEAVIESV--------------PLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 387 ~aDlVi~avpe~~--------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+||+||.+.+... .+.+++.+.+.++. |+++++.. +.|+.
T Consensus 72 ~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~--tNPv~ 125 (318)
T 1ez4_A 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSG-FDGIFLVA--ANPVD 125 (318)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTT-CCSEEEEC--SSSHH
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEe--CCcHH
Confidence 9999999874321 34555666677776 45544433 34444
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-06 Score=85.10 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=67.7
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCcc
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~ 383 (539)
..+||+|||+|.||.++|..|+..|+ +|+++|+++++++.....+.+.. . .+..+.. +.+++
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~----~-----------~~~~~~i~~~~~~ 72 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDAL----P-----------FTSPKKIYSAEYS 72 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----G-----------GSCCCEEEECCGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhh----h-----------hcCCcEEEECcHH
Confidence 34689999999999999999999988 99999999988776544332211 0 0011222 34568
Q ss_pred CCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 384 EFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 384 ~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++++||+||.+... +..+.+.+.+.+.++++ +++++..+
T Consensus 73 a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvvt 125 (326)
T 3vku_A 73 DAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVAA 125 (326)
T ss_dssp GGTTCSEEEECCCCC----------------CHHHHHHHHHTTTC-CSEEEECS
T ss_pred HhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEcc
Confidence 89999999998632 22344566667777765 55554433
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=98.14 E-value=4.4e-06 Score=83.05 Aligned_cols=104 Identities=19% Similarity=0.234 Sum_probs=68.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.+++..++..+ .+|+++|+++++++.....+.+. .... .+ -.++. +++++++
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~----~~~~-~~--------~~v~~-~~~~a~~ 66 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHA----TPFA-HP--------VWVWA-GSYGDLE 66 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTT----GGGS-CC--------CEEEE-CCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHh----Hhhc-CC--------eEEEE-CCHHHhC
Confidence 48999999999999999999987 59999999988777533332211 0000 00 12332 3568899
Q ss_pred CcCEEEEcccCC--------------hhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 387 DVDMVIEAVIES--------------VPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 387 ~aDlVi~avpe~--------------~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+||+||.+.+.. ..+.+++.+.+.++.++ ++++.. +.|+.
T Consensus 67 ~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~-a~iiv~--tNPv~ 120 (310)
T 2xxj_A 67 GARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPE-AVLLVA--TNPVD 120 (310)
T ss_dssp TEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-CEEEEC--SSSHH
T ss_pred CCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCC-cEEEEe--cCchH
Confidence 999999987432 33455666677788654 544433 33444
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-06 Score=85.67 Aligned_cols=95 Identities=15% Similarity=0.206 Sum_probs=68.7
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.+||+|||+ |.+|.++|..++..|. +|+++|+++++++.....+.+.. .. ..++.+++++ +
T Consensus 8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--------~~-------~~~i~~t~d~~~ 72 (343)
T 3fi9_A 8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--------FE-------GLNLTFTSDIKE 72 (343)
T ss_dssp SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--------CT-------TCCCEEESCHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--------CC-------CCceEEcCCHHH
Confidence 469999997 9999999999999984 99999999987765444333210 10 0245566676 7
Q ss_pred CCCCcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCe
Q 009256 384 EFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHC 417 (539)
Q Consensus 384 ~~~~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ 417 (539)
++++||+||.+.. .+..+.+.+.+.+.++.++..
T Consensus 73 al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~ 120 (343)
T 3fi9_A 73 ALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCK 120 (343)
T ss_dssp HHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcE
Confidence 7999999999862 133455666677888886654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.6e-06 Score=82.30 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=68.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCccCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~ 385 (539)
+||+|||+|.+|.+++..++..++ +|+++|+++++++.....+.+.. ... ..++. .++++++
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~----~~~-----------~~~~i~~~~~~a~ 74 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNAL----PFT-----------SPKKIYSAEYSDA 74 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTG----GGS-----------CCCEEEECCGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHH----Hhc-----------CCeEEEECCHHHh
Confidence 589999999999999999998886 99999999988765433332111 000 11222 2455889
Q ss_pred CCcCEEEEcccCC--h------------hHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 386 KDVDMVIEAVIES--V------------PLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 386 ~~aDlVi~avpe~--~------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
++||+||.+.+.. + .+.+.+.+.+.++.+ +++++.. +.|+.
T Consensus 75 ~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~--tNPv~ 129 (326)
T 2zqz_A 75 KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVA--ANPVD 129 (326)
T ss_dssp GGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTC-CSEEEEC--SSSHH
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe--CCcHH
Confidence 9999999987432 1 344555666777864 4544433 34444
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.11 E-value=9.4e-07 Score=77.50 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=60.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..++..|...|++|+++|+++++.+.+.+.+. ......++. +.+.+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~---------------------~~~~~~~~~~~~~~~ 80 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE---------------------YEYVLINDIDSLIKN 80 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT---------------------CEEEECSCHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC---------------------CceEeecCHHHHhcC
Confidence 48999999999999999999999999999999998776543220 011223344 55788
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
+|+||.++|..... +. .+.++++.+++..
T Consensus 81 ~Divi~at~~~~~~----~~--~~~l~~g~~vid~ 109 (144)
T 3oj0_A 81 NDVIITATSSKTPI----VE--ERSLMPGKLFIDL 109 (144)
T ss_dssp CSEEEECSCCSSCS----BC--GGGCCTTCEEEEC
T ss_pred CCEEEEeCCCCCcE----ee--HHHcCCCCEEEEc
Confidence 99999999865321 11 1345566666543
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.5e-07 Score=90.81 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=73.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||++.+... . .. ...++ +.+++
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~----------------~------------~~-~~~sl~ell~~ 170 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG----------------D------------EG-DFRTLDELVQE 170 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT----------------C------------CS-CBCCHHHHHHH
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc----------------c------------Cc-ccCCHHHHHhh
Confidence 4899999999999999999999999999997543210 0 01 12334 56789
Q ss_pred cCEEEEcccCChh----HHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCC-CCcEEEeccC
Q 009256 388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSS-QDRIIGAHFF 447 (539)
Q Consensus 388 aDlVi~avpe~~~----~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~-~~r~vg~h~~ 447 (539)
||+|+.++|-..+ ....+-++..+.++++++++..+.+-.+ ..+...+.. .-...++..|
T Consensus 171 aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~ 237 (381)
T 3oet_A 171 ADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVW 237 (381)
T ss_dssp CSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCC
T ss_pred CCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeecc
Confidence 9999999996655 3333335566788999998865555433 345444432 2234455544
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=8.4e-07 Score=89.15 Aligned_cols=100 Identities=14% Similarity=0.033 Sum_probs=71.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|++|++||++++.. . + ...... ++ +.+++
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~------------------------~~~~~~-~l~ell~~ 197 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-H------------------------PDFDYV-SLEDLFKQ 197 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-C------------------------TTCEEC-CHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-H------------------------hccccC-CHHHHHhc
Confidence 489999999999999999999999999999986431 0 0 001111 33 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~ 436 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-.+ ..+...+.
T Consensus 198 aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~ 248 (333)
T 1dxy_A 198 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 248 (333)
T ss_dssp CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHH
Confidence 99999999987765443335566789999988866655333 34555443
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.05 E-value=7.3e-07 Score=90.66 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=68.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.||.++|..+...|++|++||++++.. ..+ .. ..++ +.+++
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---------------~~g-------------~~-~~~l~ell~~ 167 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---------------EPD-------------GE-FVSLERLLAE 167 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---------------STT-------------SC-CCCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---------------ccC-------------cc-cCCHHHHHHh
Confidence 489999999999999999999999999999765421 001 11 1234 55789
Q ss_pred cCEEEEcccCChh----HHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhcc
Q 009256 388 VDMVIEAVIESVP----LKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~----~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~ 435 (539)
||+|+.++|...+ ....+-+++.+.++++++++..+.+-.+ ..+...+
T Consensus 168 aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL 221 (380)
T 2o4c_A 168 ADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLL 221 (380)
T ss_dssp CSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHH
Confidence 9999999997665 3332324566789999988865555333 3454444
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.00 E-value=2.1e-05 Score=72.47 Aligned_cols=142 Identities=15% Similarity=0.130 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEE--EecCCCC----cccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIV--LTGNGGR----FSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKP 100 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vv--l~g~g~~----F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p 100 (539)
.++.++...+...|..++.++..+-|. |.+.|.. ...-+|+ .....++ +.|...+.|
T Consensus 36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v----------------~aglaIy-d~m~~~~~~ 98 (205)
T 4gm2_A 36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI----------------TDVISIV-DVINYISSD 98 (205)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHH----------------HHHHHHH-HHHHHSSSC
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCH----------------HHHHHHH-HHHHhcCCC
Confidence 489999999999999887543333333 3333310 0000111 1233556 678899999
Q ss_pred EEEEEcCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhh------------------ccccccC--HHH
Q 009256 101 IVAAVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLVG--LSK 158 (539)
Q Consensus 101 ~iaav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~vG--~~~ 158 (539)
|...+-|.|.+.|.-|++++| .|++.+++++.+-...-|.. .|-.. .+.+.-| ...
T Consensus 99 V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~--~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~ 176 (205)
T 4gm2_A 99 VYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIP--FNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNV 176 (205)
T ss_dssp EEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCC--SSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred EEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCccccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999 59999999987655543331 11110 1111112 234
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcc
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSE 187 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (539)
..+++-....++|+||+++||||+|++.|
T Consensus 177 I~~~m~rd~~msa~EA~eyGlID~V~~~e 205 (205)
T 4gm2_A 177 ISNVLERDKYFNADEAVDFKLIDHILEKE 205 (205)
T ss_dssp HHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred HHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence 44555566779999999999999998653
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-05 Score=68.24 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+. . ..+-.|-.+..+. +.. ..+.++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~---g--~~~i~gd~~~~~~---l~~-------a~i~~a 72 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER---G--VRAVLGNAANEEI---MQL-------AHLECA 72 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT---T--CEEEESCTTSHHH---HHH-------TTGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc---C--CCEEECCCCCHHH---HHh-------cCcccC
Confidence 479999999999999999999999999999999988776321 0 0000010000000 000 135789
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
|+||.++|++..... +...+....+...+++
T Consensus 73 d~vi~~~~~~~~n~~-~~~~a~~~~~~~~iia 103 (140)
T 3fwz_A 73 KWLILTIPNGYEAGE-IVASARAKNPDIEIIA 103 (140)
T ss_dssp SEEEECCSCHHHHHH-HHHHHHHHCSSSEEEE
T ss_pred CEEEEECCChHHHHH-HHHHHHHHCCCCeEEE
Confidence 999999987654322 2233434433334444
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-06 Score=88.40 Aligned_cols=99 Identities=14% Similarity=0.002 Sum_probs=69.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|++|++||++++.. . + ..... .++ +.+++
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~------------------------~~~~~-~~l~ell~~ 198 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-E------------------------DYCTQ-VSLDEVLEK 198 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-T------------------------TTCEE-CCHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-H------------------------hcccc-CCHHHHHhh
Confidence 489999999999999999999999999999986431 0 0 00111 134 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~ 435 (539)
||+|+.++|...+....+-++..+.++++++++..+.+-. ...+...+
T Consensus 199 aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL 248 (331)
T 1xdw_A 199 SDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248 (331)
T ss_dssp CSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred CCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHH
Confidence 9999999997655433332456677899998876555433 33454444
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=97.98 E-value=6.1e-06 Score=80.70 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||.+++..|.+.|++|++||+++++.+.+.+.+ + +...+++ +.+++
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~----------g-------------~~~~~~~~~~~~~ 186 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF----------P-------------LEVVNSPEEVIDK 186 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS----------C-------------EEECSCGGGTGGG
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc----------C-------------CeeehhHHhhhcC
Confidence 4899999999999999999999999999999998766542210 1 1223244 66789
Q ss_pred cCEEEEcccCChhHH-HHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLK-QKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~-~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+|+||.|+|...... ...+. .+.++++.++++...
T Consensus 187 aDiVi~atp~~~~~~~~~~i~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 187 VQVIVNTTSVGLKDEDPEIFN--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp CSEEEECSSTTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred CCEEEEeCCCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence 999999998654210 00111 245778888877665
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.9e-05 Score=70.70 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=36.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~ 347 (539)
++|.|+|+|.||..++..|.+. |++|+++|+++++.+.+
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~ 79 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH 79 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence 4799999999999999999999 99999999999887765
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=66.52 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=36.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKG 347 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~ 347 (539)
+++|.|+|+|.||..++..|.+.| ++|+++|+++++.+.+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~ 45 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL 45 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 468999999999999999999999 9999999999877665
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=79.49 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..++..+...|.+|++||+++++.+.+.+ .|. ..+. ..++ +.+++
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~-----------~g~----------~~~~-~~~l~~~l~~ 215 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE-----------MGL----------VPFH-TDELKEHVKD 215 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------TTC----------EEEE-GGGHHHHSTT
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------CCC----------eEEc-hhhHHHHhhC
Confidence 48999999999999999999999999999999876554311 110 0000 1233 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
||+||.++|...-. ++..+.++++.+++..+.
T Consensus 216 aDvVi~~~p~~~i~-----~~~~~~mk~g~~lin~a~ 247 (300)
T 2rir_A 216 IDICINTIPSMILN-----QTVLSSMTPKTLILDLAS 247 (300)
T ss_dssp CSEEEECCSSCCBC-----HHHHTTSCTTCEEEECSS
T ss_pred CCEEEECCChhhhC-----HHHHHhCCCCCEEEEEeC
Confidence 99999999964321 123355777777765443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=2.6e-05 Score=67.75 Aligned_cols=82 Identities=20% Similarity=0.163 Sum_probs=57.7
Q ss_pred cceEEEEcC----CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 308 ~~kI~iIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
.++|+|||+ |.||..++.+|.+.||+|+.+|++.+.+ ..+....++
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----------------------------~G~~~~~s~~ 64 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVR 64 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGG
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----------------------------CCeeecCCHH
Confidence 458999999 9999999999999999866666553211 123444555
Q ss_pred cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 383 SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 383 ~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
+....+|+++.++| .+...+++.++.+ ...+.+++.
T Consensus 65 el~~~vDlvii~vp--~~~v~~v~~~~~~-~g~~~i~~~ 100 (138)
T 1y81_A 65 ELPKDVDVIVFVVP--PKVGLQVAKEAVE-AGFKKLWFQ 100 (138)
T ss_dssp GSCTTCCEEEECSC--HHHHHHHHHHHHH-TTCCEEEEC
T ss_pred HhCCCCCEEEEEeC--HHHHHHHHHHHHH-cCCCEEEEc
Confidence 44567999999999 4556667776665 445566553
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.8e-05 Score=76.70 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=61.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..++..+...|.+|++||+++++.+.+.+ .|. ..+. ..++ +.+++
T Consensus 156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~-----------~g~----------~~~~-~~~l~~~l~~ 213 (293)
T 3d4o_A 156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE-----------MGM----------EPFH-ISKAAQELRD 213 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------TTS----------EEEE-GGGHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-----------CCC----------eecC-hhhHHHHhcC
Confidence 48999999999999999999999999999999876544311 110 0000 1223 55789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+|+|+.++|...-.. +..+.++++.+++..+.
T Consensus 214 aDvVi~~~p~~~i~~-----~~l~~mk~~~~lin~ar 245 (293)
T 3d4o_A 214 VDVCINTIPALVVTA-----NVLAEMPSHTFVIDLAS 245 (293)
T ss_dssp CSEEEECCSSCCBCH-----HHHHHSCTTCEEEECSS
T ss_pred CCEEEECCChHHhCH-----HHHHhcCCCCEEEEecC
Confidence 999999998643211 23345778887765443
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=97.86 E-value=7.3e-05 Score=80.85 Aligned_cols=146 Identities=16% Similarity=0.075 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCcccC-CCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEcCccc
Q 009256 32 IVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG-FDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110 (539)
Q Consensus 32 ~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG-~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~ 110 (539)
...++.+.|+.+..|+.++.|+|.-.. -| +++.... ...+.+ +.+....|||||.+++ +.
T Consensus 71 ~~~~i~~~L~~a~~d~~ik~I~L~ins----pGgG~v~~~~-------------~I~~~i-~~~k~~gkpvva~~~~-aa 131 (593)
T 3bf0_A 71 SLFDIVNTIRQAKDDRNITGIVMDLKN----FAGGDQPSMQ-------------YIGKAL-KEFRDSGKPVYAVGEN-YS 131 (593)
T ss_dssp EHHHHHHHHHHHHHCTTCCCEEEECTE----EEECCHHHHH-------------HHHHHH-HHHHHTTCCEEEEESC-EE
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEeCC----CCCCcHHHHH-------------HHHHHH-HHHHhcCCeEEEEEcc-ch
Confidence 467889999999999999999997541 22 3332211 122334 3456667999999876 67
Q ss_pred cchhHhhhccCEEEeeCCceEeCCcccC------------CCCC---------Ccchhh-----------cc--------
Q 009256 111 GGGLELAMGCHARIAAPKTQLGLPELTL------------GVIP---------GFGGTQ-----------RL-------- 150 (539)
Q Consensus 111 GgG~~lal~~D~~ia~~~a~f~~pe~~~------------Gl~p---------~~g~~~-----------~l-------- 150 (539)
.+|+.|+.+||-+++.+++.++...+.. |+-+ ..+-.+ .+
T Consensus 132 s~~y~lAsaad~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~ms~~~re~~~~~l~~~~ 211 (593)
T 3bf0_A 132 QGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELW 211 (593)
T ss_dssp HHHHHHHTTSSEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCCCHHHHHHHHHHHHHHH
Confidence 7889999999999999999988765532 2210 000000 00
Q ss_pred ---------ccccCHHHHHHHHHc-------CCCCCHHHHHHcCCcceecCcchHHHHHHHH
Q 009256 151 ---------PRLVGLSKAIEMMLL-------SKSITSEEGWKLGLIDAVVTSEELLKVSRLW 196 (539)
Q Consensus 151 ---------~r~vG~~~a~~l~l~-------g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 196 (539)
.|-+......+++-. +..++|++|++.||||++...+++.....+.
T Consensus 212 ~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~~e~~~~l~~~ 273 (593)
T 3bf0_A 212 QNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKE 273 (593)
T ss_dssp HHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 011222233333333 7899999999999999999777776655544
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8e-05 Score=74.09 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=61.3
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc---cCCc-
Q 009256 310 KVAVIGG-GLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDY- 382 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~- 382 (539)
||+|||+ |.+|.+++..|+..| .+|+++|+++ .+..... +...... ..+.. ++++
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~d--------L~~~~~~--------~~l~~~~~t~d~~ 63 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAAD--------LSHIETR--------ATVKGYLGPEQLP 63 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHH--------HTTSSSS--------CEEEEEESGGGHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHH--------HhccCcC--------ceEEEecCCCCHH
Confidence 8999998 999999999999988 6999999997 1111111 1111100 13443 3466
Q ss_pred cCCCCcCEEEEcccC--Ch------------hHHHHHHHHHHHhCCCCeEE
Q 009256 383 SEFKDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCIL 419 (539)
Q Consensus 383 ~~~~~aDlVi~avpe--~~------------~~~~~~~~~l~~~~~~~~ii 419 (539)
+++++||+||.+... .. ...+.+.+.+.++.+...++
T Consensus 64 ~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi 114 (314)
T 1mld_A 64 DCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMIC 114 (314)
T ss_dssp HHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred HHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 469999999998732 11 45666777788887544443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-05 Score=66.63 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=35.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
+++|.|+|+|.+|..++..|.+.|++|+++|++++..+.+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~ 45 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY 45 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTT
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 4579999999999999999999999999999998765543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=2.7e-05 Score=68.97 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=35.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++|.|+|+|.+|..++..|.+.|++|+++|+++++++.+
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~ 58 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRL 58 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 489999999999999999999999999999999876543
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.3e-05 Score=74.84 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=51.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCCc
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKDV 388 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~a 388 (539)
+|+|||+|.||.+++..|.+.|++|+++|+++++.+.+.+.. + .. .+++ +. +++
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~----------~-------------~~-~~~~~~~-~~~ 172 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF----------G-------------LR-AVPLEKA-REA 172 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH----------T-------------CE-ECCGGGG-GGC
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------c-------------cc-hhhHhhc-cCC
Confidence 799999999999999999999999999999998776653321 1 01 1233 45 889
Q ss_pred CEEEEcccCCh
Q 009256 389 DMVIEAVIESV 399 (539)
Q Consensus 389 DlVi~avpe~~ 399 (539)
|+||.++|...
T Consensus 173 Divi~~tp~~~ 183 (263)
T 2d5c_A 173 RLLVNATRVGL 183 (263)
T ss_dssp SEEEECSSTTT
T ss_pred CEEEEccCCCC
Confidence 99999998653
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.80 E-value=7.9e-05 Score=73.74 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=71.0
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCC--eEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~--~V~~~d~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
+||+|+| +|.+|.+++..|+..|+ +++++|+ ++++++.....+.+. ...+. + -.++. ++.+
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~----~~~~~-~--------~~v~~-~~~~ 66 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG----IAYDS-N--------TRVRQ-GGYE 66 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH----HTTTC-C--------CEEEE-CCGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHH----HhhCC-C--------cEEEe-CCHH
Confidence 4899999 99999999999998886 7999999 877654322222111 11000 0 12222 3467
Q ss_pred CCCCcCEEEEcccC--Ch------------hHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhh----ccC-CCCcEEEe
Q 009256 384 EFKDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNIVGE----KTS-SQDRIIGA 444 (539)
Q Consensus 384 ~~~~aDlVi~avpe--~~------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~----~~~-~~~r~vg~ 444 (539)
++++||+||.+... .. ...+.+.+.+.++.+ +.+++.. +.|+..+.. ... .+.|++|+
T Consensus 67 a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~~~viv~--SNPv~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHND-DYISLTT--SNPVDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCS-CCEEEEC--CSSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEe--CChHHHHHHHHHHHcCCCHHHeeec
Confidence 89999999988742 11 344555566666654 5555433 344433222 222 24577776
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.74 E-value=7.6e-05 Score=74.68 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=64.0
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc---cCCc
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLDY 382 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~ 382 (539)
+||+|+| +|.+|.+++..|+..| ++|+++|++++. ... ..+ .... .. ..+.. ++++
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~-~~~-~dL-------~~~~-~~--------~~v~~~~~t~d~ 70 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP-GVT-ADI-------SHMD-TG--------AVVRGFLGQQQL 70 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH-HHH-HHH-------HTSC-SS--------CEEEEEESHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH-hHH-HHh-------hccc-cc--------ceEEEEeCCCCH
Confidence 5899999 7999999999999999 799999998761 111 111 1100 00 12222 3355
Q ss_pred -cCCCCcCEEEEcccC--Ch------------hHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 009256 383 -SEFKDVDMVIEAVIE--SV------------PLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (539)
Q Consensus 383 -~~~~~aDlVi~avpe--~~------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 430 (539)
+++++||+||.+.+. .. ...+.+.+.+.++.+ +.+++.. +.|+..
T Consensus 71 ~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv~--SNPv~~ 130 (326)
T 1smk_A 71 EAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNLI--SNPVNS 130 (326)
T ss_dssp HHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEEC--CSSHHH
T ss_pred HHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEE--CCchHH
Confidence 678999999999742 11 445566667777774 4444433 345444
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.72 E-value=3.6e-05 Score=67.46 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=58.1
Q ss_pred ceEEEEcC----CCCcHHHHHHHHHCCCeEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~----G~mG~~iA~~l~~~G~~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
++|+|||+ |.||..++.+|.+.||+|+.+|++. +.+ ..+....++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----------------------------~G~~~~~sl 64 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----------------------------LGQQGYATL 64 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----------------------------TTEECCSST
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----------------------------CCeeccCCH
Confidence 47999999 8999999999999999977766654 211 123344455
Q ss_pred -cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
+....+|+++.++|. +....++.++.+. ..+.+++. +++.
T Consensus 65 ~el~~~~Dlvii~vp~--~~v~~v~~~~~~~-g~~~i~i~-~~~~ 105 (145)
T 2duw_A 65 ADVPEKVDMVDVFRNS--EAAWGVAQEAIAI-GAKTLWLQ-LGVI 105 (145)
T ss_dssp TTCSSCCSEEECCSCS--THHHHHHHHHHHH-TCCEEECC-TTCC
T ss_pred HHcCCCCCEEEEEeCH--HHHHHHHHHHHHc-CCCEEEEc-CChH
Confidence 445679999999994 4455666666553 44556654 3444
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=6.6e-05 Score=75.77 Aligned_cols=96 Identities=19% Similarity=0.173 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.||..++..+.. ...+|++|||++++.+.+.+.+.. ..+ -.+...++. +.+
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~------~~g-----------~~~~~~~~~~eav 192 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE------YSG-----------LTIRRASSVAEAV 192 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT------CTT-----------CEEEECSSHHHHH
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh------ccC-----------ceEEEeCCHHHHH
Confidence 479999999999999988754 346999999999998877553210 001 012334455 667
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++||+||.|+|.... ..++. .+.+++++.|+..++.
T Consensus 193 ~~aDiVi~aTps~~~--~pvl~--~~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 193 KGVDIITTVTADKAY--ATIIT--PDMLEPGMHLNAVGGD 228 (350)
T ss_dssp TTCSEEEECCCCSSE--EEEEC--GGGCCTTCEEEECSCC
T ss_pred hcCCEEEEeccCCCC--Cceec--HHHcCCCCEEEECCCC
Confidence 899999999996520 01111 2467888887765553
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00015 Score=67.97 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC-CCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK-LTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||.|+|+|.+|..++..|.+.|++|+++|++++.++.+.+.. ...+-.|- .+.+... ...+.+
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~-----------~a~i~~ 65 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILR-----------DAEVSK 65 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHH-----------HHTCCT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHH-----------hcCccc
Confidence 3799999999999999999999999999999999877653210 00000010 1100000 023689
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHh-CCCCeEEE
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKA-CPPHCILA 420 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~-~~~~~ii~ 420 (539)
||+||.+++++.. ......+... .+...+++
T Consensus 66 ad~vi~~~~~d~~--n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 66 NDVVVILTPRDEV--NLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp TCEEEECCSCHHH--HHHHHHHHHHTSCCCEEEE
T ss_pred CCEEEEecCCcHH--HHHHHHHHHHHcCCCeEEE
Confidence 9999999986542 2333444443 45455554
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.66 E-value=6.1e-05 Score=75.51 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=65.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCC----hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVN----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKML 376 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 376 (539)
+||+|+|+ |.+|.+++..|+..|+ +|+++|++ +++++.....+ ...... ....+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl--------~~~~~~------~~~~i 71 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEI--------DDCAFP------LLAGM 71 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHH--------HTTTCT------TEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHH--------hhhccc------ccCcE
Confidence 58999998 9999999999999886 89999999 55444321111 111000 01245
Q ss_pred cccCCc-cCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 377 KGVLDY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 377 ~~~~~~-~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
..+++. +++++||+||.+... +....+.+.+.+.++..++++++..|
T Consensus 72 ~~~~~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S 133 (329)
T 1b8p_A 72 TAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG 133 (329)
T ss_dssp EEESSHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEecCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 555665 789999999987631 12345566677888864555554333
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=2.6e-05 Score=81.63 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=63.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||.++|..+...|.+|++||+++...... ...| ... .++ +.+++
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a-----------~~~G-------------~~~-~~l~ell~~ 332 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQA-----------AMEG-------------YRV-VTMEYAADK 332 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHH-----------HTTT-------------CEE-CCHHHHTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHH-----------HHcC-------------CEe-CCHHHHHhc
Confidence 489999999999999999999999999999998753222 1111 111 234 66899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+|+.++....-+ -++..+.++++++|+..+.+
T Consensus 333 aDiVi~~~~t~~lI----~~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 333 ADIFVTATGNYHVI----NHDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp CSEEEECSSSSCSB----CHHHHHHCCTTEEEEECSSS
T ss_pred CCEEEECCCccccc----CHHHHhhCCCCcEEEEcCCC
Confidence 99999998322211 13455678999998866554
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.63 E-value=2.4e-05 Score=81.66 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.||.++|..+...|.+|++||+++.....+. ..| +.. .++ +.+++
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-----------~~g-------------~~~-~~l~ell~~ 312 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-----------MEG-------------FNV-VTLDEIVDK 312 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-----------TTT-------------CEE-CCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-----------HcC-------------CEe-cCHHHHHhc
Confidence 4899999999999999999999999999999987643321 111 111 234 66899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+|+.+.. ...+ +-++..+.++++++|+..+.+
T Consensus 313 aDiVi~~~~-t~~l---I~~~~l~~MK~gailiNvgrg 346 (479)
T 1v8b_A 313 GDFFITCTG-NVDV---IKLEHLLKMKNNAVVGNIGHF 346 (479)
T ss_dssp CSEEEECCS-SSSS---BCHHHHTTCCTTCEEEECSST
T ss_pred CCEEEECCC-hhhh---cCHHHHhhcCCCcEEEEeCCC
Confidence 999999963 2221 113455678999998866554
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.002 Score=62.58 Aligned_cols=155 Identities=14% Similarity=0.095 Sum_probs=98.0
Q ss_pred EEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHH
Q 009256 15 VAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVN 92 (539)
Q Consensus 15 v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (539)
|+++ -|++. .-+++....+.+.++++.+.+.. +-+|.|.-.|+ +-..|-.. ...++.... ..+ .
T Consensus 123 V~v~-a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~dsgG-----ar~qEGi~-----sl~q~aki~-~~l-~ 188 (285)
T 2f9i_B 123 FGVA-VMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSASGG-----ARMQEGII-----SLMQMGKTS-VSL-K 188 (285)
T ss_dssp EEEE-EECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEECS-----CCGGGHHH-----HHHHHHHHH-HHH-H
T ss_pred EEEE-EEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCC-----cchhhhhh-----hHhHHHHHH-HHH-H
Confidence 4444 45554 37899999999999999888764 56777754333 22222000 000111111 233 4
Q ss_pred HHHhCCCcEEEEEcCccccchhHh-hhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCH
Q 009256 93 LIEDCKKPIVAAVEGLALGGGLEL-AMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS 171 (539)
Q Consensus 93 ~i~~~~~p~iaav~G~a~GgG~~l-al~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a 171 (539)
++.....|.|+.+.|.|+||+... ++.+|+++|.++|.+++.... +..+.+-+.+. -..-+|
T Consensus 189 ~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~-------vi~~~~~~~~~----------e~~~~A 251 (285)
T 2f9i_B 189 RHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRR-------VIEQTINEKLP----------DDFQTA 251 (285)
T ss_dssp HHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH-------HHHHHHTSCCC----------TTTTBH
T ss_pred HHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHH-------HHHHHhcccch----------HhHhhH
Confidence 467789999999999999999655 889999999999988763221 11111111111 111247
Q ss_pred HHHHHcCCcceecCcchHHHHHHHHHHHH
Q 009256 172 EEGWKLGLIDAVVTSEELLKVSRLWALDI 200 (539)
Q Consensus 172 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~l 200 (539)
+-..+.|+||.|++++++.+...++...+
T Consensus 252 e~~~~~G~iD~Iv~~~e~r~~l~~~L~~l 280 (285)
T 2f9i_B 252 EFLLEHGQLDKVVHRNDMRQTLSEILKIH 280 (285)
T ss_dssp HHHHHTTCCSEECCGGGHHHHHHHHHHHT
T ss_pred HHHHhcCCccEEeChHHHHHHHHHHHHHh
Confidence 77889999999999888777666665443
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0001 Score=77.50 Aligned_cols=87 Identities=25% Similarity=0.256 Sum_probs=63.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||+|.||..+|..+...|.+|+++|+++++++.+.+ .|. .. .++ +.+++
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~-----------~Ga-------------~~-~~l~e~l~~ 329 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM-----------EGF-------------DV-VTVEEAIGD 329 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTC-------------EE-CCHHHHGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------cCC-------------EE-ecHHHHHhC
Confidence 48999999999999999999999999999999987665422 121 11 122 45678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+|+||++++...-+. .+..+.++++.+++..+.
T Consensus 330 aDvVi~atgt~~~i~----~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 330 ADIVVTATGNKDIIM----LEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp CSEEEECSSSSCSBC----HHHHHHSCTTCEEEECSS
T ss_pred CCEEEECCCCHHHHH----HHHHHhcCCCcEEEEeCC
Confidence 999999987544222 234456788888765444
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00033 Score=72.23 Aligned_cols=119 Identities=14% Similarity=0.136 Sum_probs=71.6
Q ss_pred ceEEEEcCCCC-cHHHHHHHHH--C---CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLM-GSGIATAHIL--N---NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~--~---G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|.. +..+...|+. . +.+|+++|+++++++.. ..+...+ .... .+++.++|+
T Consensus 3 ~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~-~~~~~~~---~~~~-----------~~v~~t~d~ 67 (417)
T 1up7_A 3 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIV-VDFVKRL---VKDR-----------FKVLISDTF 67 (417)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHH-HHHHHHH---HTTS-----------SEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHH-HHHHHHH---hhCC-----------eEEEEeCCH
Confidence 58999999985 2222334455 3 56899999999987753 2222211 1100 246667787
Q ss_pred -cCCCCcCEEEEcccC--------------Ch--------------------hHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 383 -SEFKDVDMVIEAVIE--------------SV--------------------PLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 383 -~~~~~aDlVi~avpe--------------~~--------------------~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
+++++||+||++.-. +. .+..++.+++.+++ +++++.-|....
T Consensus 68 ~~al~~AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~--~A~lin~TNPvd 145 (417)
T 1up7_A 68 EGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS--NATIVNFTNPSG 145 (417)
T ss_dssp HHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT--CCEEEECSSSHH
T ss_pred HHHhCCCCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC--CEEEEEeCChHH
Confidence 889999999999821 01 23556677888888 666654444333
Q ss_pred h-HHHhhccCCCCcEEEe
Q 009256 428 L-NIVGEKTSSQDRIIGA 444 (539)
Q Consensus 428 ~-~~i~~~~~~~~r~vg~ 444 (539)
+ +..........|++|+
T Consensus 146 i~t~a~~k~~p~~rviG~ 163 (417)
T 1up7_A 146 HITEFVRNYLEYEKFIGL 163 (417)
T ss_dssp HHHHHHHHTTCCSSEEEC
T ss_pred HHHHHHHHhCCCCCEEEe
Confidence 2 2222223333478886
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=72.82 Aligned_cols=90 Identities=14% Similarity=0.038 Sum_probs=63.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL--NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.||..++..|.. ...+|.+|||++++.+.+.+.+.. .+ + .+. .+++ +.+
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~-------~~-~----------~~~-~~~~~e~v 186 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-I----------SAS-VQPAEEAS 186 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-C----------CEE-ECCHHHHT
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh-------cC-c----------eEE-ECCHHHHh
Confidence 479999999999999999887 346899999999998887654321 00 0 122 3445 667
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
++|+||.|+|....+ +. .+.+++++.|...++
T Consensus 187 -~aDvVi~aTp~~~pv----~~--~~~l~~G~~V~~ig~ 218 (322)
T 1omo_A 187 -RCDVLVTTTPSRKPV----VK--AEWVEEGTHINAIGA 218 (322)
T ss_dssp -SSSEEEECCCCSSCC----BC--GGGCCTTCEEEECSC
T ss_pred -CCCEEEEeeCCCCce----ec--HHHcCCCeEEEECCC
Confidence 999999999965422 11 246788888776543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0002 Score=71.69 Aligned_cols=73 Identities=10% Similarity=0.028 Sum_probs=53.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.. +.....+++ +
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~----------------------~~~~~~~~~~~ 61 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKEL----------------------AIPVAYGSYEE 61 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHT----------------------TCCCCBSSHHH
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHc----------------------CCCceeCCHHH
Confidence 345899999999999999999884 67776 7899998877653321 111334555 3
Q ss_pred CCC--CcCEEEEcccCChhH
Q 009256 384 EFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 384 ~~~--~aDlVi~avpe~~~~ 401 (539)
.+. ++|+|++|+|.....
T Consensus 62 ll~~~~~D~V~i~tp~~~h~ 81 (330)
T 3e9m_A 62 LCKDETIDIIYIPTYNQGHY 81 (330)
T ss_dssp HHHCTTCSEEEECCCGGGHH
T ss_pred HhcCCCCCEEEEcCCCHHHH
Confidence 444 799999999976653
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.4e-05 Score=77.65 Aligned_cols=88 Identities=19% Similarity=0.147 Sum_probs=62.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|.++|..+...|.+|+++|+++.....+.. .| ... .++ +.+++
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~-----------~G-------------~~~-~sL~eal~~ 266 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAM-----------EG-------------YQV-LLVEDVVEE 266 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEE-CCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHH-----------hC-------------Cee-cCHHHHHhh
Confidence 48999999999999999999999999999999876544311 11 111 234 67899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+|+.+.....-+. .+..+.++++++|+..+.+
T Consensus 267 ADVVilt~gt~~iI~----~e~l~~MK~gAIVINvgRg 300 (436)
T 3h9u_A 267 AHIFVTTTGNDDIIT----SEHFPRMRDDAIVCNIGHF 300 (436)
T ss_dssp CSEEEECSSCSCSBC----TTTGGGCCTTEEEEECSSS
T ss_pred CCEEEECCCCcCccC----HHHHhhcCCCcEEEEeCCC
Confidence 999998664322111 2345668899988754433
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00039 Score=70.28 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=54.4
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.. .+...+++
T Consensus 11 ~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------~~~~~~~~ 67 (354)
T 3q2i_A 11 DRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT-----------------------GARGHASL 67 (354)
T ss_dssp SSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH-----------------------CCEEESCH
T ss_pred CCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc-----------------------CCceeCCH
Confidence 3456899999999999999999887 77865 8899999877764321 13445566
Q ss_pred -cCCC--CcCEEEEcccCChh
Q 009256 383 -SEFK--DVDMVIEAVIESVP 400 (539)
Q Consensus 383 -~~~~--~aDlVi~avpe~~~ 400 (539)
+.+. ++|+|++|+|....
T Consensus 68 ~~ll~~~~~D~V~i~tp~~~h 88 (354)
T 3q2i_A 68 TDMLAQTDADIVILTTPSGLH 88 (354)
T ss_dssp HHHHHHCCCSEEEECSCGGGH
T ss_pred HHHhcCCCCCEEEECCCcHHH
Confidence 4444 79999999997654
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.51 E-value=8.5e-05 Score=70.69 Aligned_cols=78 Identities=23% Similarity=0.206 Sum_probs=53.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-C
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF-K 386 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~ 386 (539)
||+|||+|.||..++..+.+.|++| .+||+++. .+. ..+++ +.+ .
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~~-------------------------------~~~~~~~l~~~ 49 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HEK-------------------------------MVRGIDEFLQR 49 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CTT-------------------------------EESSHHHHTTS
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hhh-------------------------------hcCCHHHHhcC
Confidence 7999999999999999999999997 69998842 110 12333 334 6
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
++|+|++|+|.+.. . ++. ...+..+..+++.++
T Consensus 50 ~~DvVv~~~~~~~~-~-~~~---~~~l~~G~~vv~~~~ 82 (236)
T 2dc1_A 50 EMDVAVEAASQQAV-K-DYA---EKILKAGIDLIVLST 82 (236)
T ss_dssp CCSEEEECSCHHHH-H-HHH---HHHHHTTCEEEESCG
T ss_pred CCCEEEECCCHHHH-H-HHH---HHHHHCCCcEEEECc
Confidence 89999999995532 2 222 233445666665543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.46 E-value=5.1e-05 Score=76.78 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHh-------c-CC---CCHHHHHHHhhccc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVT-------R-GK---LTQDKANNALKMLK 377 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~-------~-~~---~~~~~~~~~~~~i~ 377 (539)
.||+|||+|.||..++..+...|.+|+++|+++++++.+.+. .. ..+. . +. ++.+.....
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l-Ga---~~~~l~~~~~~~~gya~~~~~~~~~~~----- 255 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV-GA---QWLDLGIDAAGEGGYARELSEAERAQQ----- 255 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT-TC---EECCCC-------------CHHHHHHH-----
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC---eEEeccccccccccchhhhhHHHHhhh-----
Confidence 589999999999999999999999999999999987776431 00 0000 0 00 001000000
Q ss_pred ccCCc-cCCCCcCEEEEcc--cCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 378 GVLDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 378 ~~~~~-~~~~~aDlVi~av--pe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
..++ +.++++|+||.++ |....- .-+-++..+.++++.+|++.+
T Consensus 256 -~~~l~e~l~~aDIVI~tv~iPg~~ap-~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 256 -QQALEDAITKFDIVITTALVPGRPAP-RLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp -HHHHHHHHTTCSEEEECCCCTTSCCC-CCBCHHHHHTSCTTCEEEETT
T ss_pred -HHHHHHHHhcCCEEEECCCCCCcccc-eeecHHHHhcCCCCcEEEEEe
Confidence 1122 5679999999986 432110 011245666788999888654
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.45 E-value=9.3e-05 Score=73.46 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-N-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++|+|||+|.||..++..|.. . ..+|++|||+ +.+.+.+++...+ | -.+... +. +++
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~------g-----------~~~~~~-~~~eav 181 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC------G-----------VPARMA-APADIA 181 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH------T-----------SCEEEC-CHHHHH
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc------C-----------CeEEEe-CHHHHH
Confidence 479999999999999999886 3 4589999999 5455444332111 1 012223 45 668
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++||+||.|+|....+ +. .+.++++++|.+..|.
T Consensus 182 ~~aDIVi~aT~s~~pv----l~--~~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 182 AQADIVVTATRSTTPL----FA--GQALRAGAFVGAIGSS 215 (313)
T ss_dssp HHCSEEEECCCCSSCS----SC--GGGCCTTCEEEECCCS
T ss_pred hhCCEEEEccCCCCcc----cC--HHHcCCCcEEEECCCC
Confidence 8999999999865322 21 3568899988876654
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0001 Score=73.84 Aligned_cols=101 Identities=19% Similarity=0.121 Sum_probs=70.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+...|.+|..||+.+..... + .... ..++ +.++.
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~-------------~-------------~~~~-~~~l~ell~~ 194 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKREDLK-------------E-------------KGCV-YTSLDELLKE 194 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH-------------H-------------TTCE-ECCHHHHHHH
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchhhh-------------h-------------cCce-ecCHHHHHhh
Confidence 58999999999999999999999999999987542111 0 0111 1233 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~ 436 (539)
||+|+..+|-..+.+.-+=++..+.++++++++..+-+ +.-..+...+.
T Consensus 195 sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~ 245 (334)
T 3kb6_A 195 SDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQ 245 (334)
T ss_dssp CSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHH
Confidence 99999999977665443335566789999988744434 33345555443
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0031 Score=66.38 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=100.2
Q ss_pred cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-..|.-|.+. .-++.....+.+..+++.+.+. .+-+|.|.-. .|+.+.+-.. ....+.+.+...
T Consensus 95 ~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~dS-----gGaRmqEg~~-----~l~~~~~i~~~~ 163 (530)
T 3iav_A 95 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGINDS-----GGARIQEGVA-----SLGAYGEIFRRN 163 (530)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CSBCGGGTHH-----HHHHHHHHHHHH
T ss_pred CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEcC-----CCcchhhhhh-----hHHHHHHHHHHH
Confidence 3433344445553 4899999999999999988765 4567777643 3444432110 011111111111
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~ 168 (539)
. ++.. ..|+|+.|.|+|.|||......||++|++++ +.+++. |+...+. .+|+.
T Consensus 164 ~--~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~~--~~ge~ 218 (530)
T 3iav_A 164 T--HASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIKT--VTGED 218 (530)
T ss_dssp H--HTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCC
T ss_pred H--HHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHHH--HhCCc
Confidence 1 1222 3999999999999999998889999999975 888763 3222221 57889
Q ss_pred CCHHHH-------HHcCCcceecCcc-hHHHHHHHHHHHH
Q 009256 169 ITSEEG-------WKLGLIDAVVTSE-ELLKVSRLWALDI 200 (539)
Q Consensus 169 ~~a~eA-------~~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (539)
+++++. ...|++|.++++| +..+.++++...+
T Consensus 219 v~~e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~~ls~l 258 (530)
T 3iav_A 219 VGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL 258 (530)
T ss_dssp CCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred CChhhcchHHHHHhccCceeEEecChHHHHHHHHHHHHhc
Confidence 999875 6899999999776 4666666666655
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.43 E-value=5.9e-05 Score=76.93 Aligned_cols=110 Identities=14% Similarity=0.114 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCC---CCHHHHHHHhhccc------cc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGK---LTQDKANNALKMLK------GV 379 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~i~------~~ 379 (539)
.||+|||+|.+|..++..+...|.+|++||+++++++.+.+. .. ..+.... -+.+........++ -.
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~-G~---~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~ 266 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASL-GA---KFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA 266 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT-TC---EECCCCC-----------------CHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc-CC---ceeecccccccccccccchhhhcchhhhhhhH
Confidence 489999999999999999999999999999999887776331 00 0000000 00000000000000 00
Q ss_pred CCc-cCCCCcCEEEEcc--cCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 380 LDY-SEFKDVDMVIEAV--IESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 380 ~~~-~~~~~aDlVi~av--pe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
.++ +.+++||+||.++ |....- .-+-++..+.++++.+|++.+
T Consensus 267 ~~l~e~l~~aDVVI~tvlipg~~ap-~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 267 ALVAEHIAKQDIVITTALIPGRPAP-RLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHTCSEEEECCCCSSSCCC-CCBCHHHHTTSCTTCEEEETT
T ss_pred hHHHHHhcCCCEEEECCcCCCCCCC-EEecHHHHhcCCCCCEEEEEe
Confidence 122 5678999999986 432210 011245666788999988655
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00036 Score=70.22 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=62.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.. + ....+++ +.
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~----------------------g-~~~~~~~~~~ 60 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN----------------------G-AEAVASPDEV 60 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT----------------------T-CEEESSHHHH
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc----------------------C-CceeCCHHHH
Confidence 35899999999999999999886 67776 7899998877653210 1 3344555 44
Q ss_pred CC--CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 009256 385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (539)
Q Consensus 385 ~~--~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 430 (539)
+. ++|+|++|+|..... .+.....+. ...+++.-..+....+
T Consensus 61 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~ 104 (344)
T 3euw_A 61 FARDDIDGIVIGSPTSTHV--DLITRAVER--GIPALCEKPIDLDIEM 104 (344)
T ss_dssp TTCSCCCEEEECSCGGGHH--HHHHHHHHT--TCCEEECSCSCSCHHH
T ss_pred hcCCCCCEEEEeCCchhhH--HHHHHHHHc--CCcEEEECCCCCCHHH
Confidence 55 799999999976653 333333222 1224544333555543
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00034 Score=69.26 Aligned_cols=71 Identities=14% Similarity=-0.036 Sum_probs=52.5
Q ss_pred cceEEEEcCCCCcHH-HHHHHHH-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+.||+|||+|.||.. ++..+.+ .+++|+ ++|+++++++...+.. .+...+++ +
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------~~~~~~~~~~ 62 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY-----------------------RIMPFDSIES 62 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH-----------------------TCCBCSCHHH
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc-----------------------CCCCcCCHHH
Confidence 458999999999997 8888876 467877 8999999877764421 12224455 4
Q ss_pred CCCCcCEEEEcccCChhH
Q 009256 384 EFKDVDMVIEAVIESVPL 401 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~ 401 (539)
.+.++|+|++|+|.....
T Consensus 63 ll~~~D~V~i~tp~~~h~ 80 (308)
T 3uuw_A 63 LAKKCDCIFLHSSTETHY 80 (308)
T ss_dssp HHTTCSEEEECCCGGGHH
T ss_pred HHhcCCEEEEeCCcHhHH
Confidence 456999999999976643
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00053 Score=68.07 Aligned_cols=101 Identities=19% Similarity=0.131 Sum_probs=62.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC--
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD-- 381 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-- 381 (539)
+||+|+|+ |.+|.+++..|+..|+ ++.++|+ ++++++.....+.+.. .. .+. + -.+...++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~-~~--~~~-~--------~~i~~~~d~l 68 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL-AG--TRS-D--------ANIYVESDEN 68 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH-TT--SCC-C--------CEEEEEETTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH-Hh--cCC-C--------eEEEeCCcch
Confidence 38999999 9999999999998885 7999999 7765443222222111 00 000 0 12333333
Q ss_pred ccCCCCcCEEEEccc--C------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 382 YSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 382 ~~~~~~aDlVi~avp--e------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
.+++++||+||.+.. . +....+.+.+.+.++. +.+++..|
T Consensus 69 ~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv~S 122 (313)
T 1hye_A 69 LRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFVIT 122 (313)
T ss_dssp GGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECS
T ss_pred HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence 478999999998862 1 2234445566677777 44444333
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0038 Score=65.65 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=94.9
Q ss_pred EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH
Q 009256 17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (539)
Q Consensus 17 ~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (539)
.|.-+... .-++.....+.+..+++.+.+. .+-+|.|.-. .|+.+.+-.. ....+.+.+.+.. .
T Consensus 108 ~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dS-----GGARmqeg~~-----sl~~~~~i~~~~~---~ 173 (531)
T 3n6r_B 108 YVFSQDFTVLGGSVSETHSKKICKIMDMAMQN-GAPVIGINDS-----GGARIQEGVD-----SLAGYGEVFQRNI---M 173 (531)
T ss_dssp EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECC-----CCBCGGGTHH-----HHHHHHHHHHHHH---H
T ss_pred EEEEECCCcccccccHHHHHHHHHHHHHHHHc-CCCEEEEeCC-----CccccCcccc-----hhhhHHHHHHHHH---H
Confidence 34444443 3789999999999999988765 3556777643 4444443110 0011111111111 1
Q ss_pred HhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHH
Q 009256 95 EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173 (539)
Q Consensus 95 ~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~e 173 (539)
..-..|+|++|.|+|.|||......||++|+.++ +.+++. |+...+ ..+|+.+++++
T Consensus 174 ~s~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~--~~~ge~v~~E~ 231 (531)
T 3n6r_B 174 ASGVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVK--TVTNEQVSAEE 231 (531)
T ss_dssp TTTTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH--HHHCCCCCHHH
T ss_pred HhCCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHH--HHhCCccChhh
Confidence 2245899999999999999988888999999985 666542 222222 14789999999
Q ss_pred H-------HHcCCcceecCcch-HHHHHHHHHH
Q 009256 174 G-------WKLGLIDAVVTSEE-LLKVSRLWAL 198 (539)
Q Consensus 174 A-------~~~Glv~~vv~~~~-l~~~a~~~a~ 198 (539)
. .+.|++|.++++|+ ..+.++++..
T Consensus 232 LGGa~~h~~~sG~~d~v~~~e~~a~~~~r~lls 264 (531)
T 3n6r_B 232 LGGATTHTRKSSVADAAFENDVEALAEVRRLVD 264 (531)
T ss_dssp HHBHHHHHHTTSCCSEEESSHHHHHHHHHHHHT
T ss_pred cchHHHHhhccCcceEEeCCHHHHHHHHHHHHH
Confidence 8 89999999998753 4444444443
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00026 Score=74.32 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=49.2
Q ss_pred ceEEEEcCCCCcHH--HHHHHHH----C--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 309 RKVAVIGGGLMGSG--IATAHIL----N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 309 ~kI~iIG~G~mG~~--iA~~l~~----~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
.||+|||+|..|.. +...++. . +.+|+++|+++++++......++.... .... -.+..++
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~-~~~~-----------~~i~~t~ 68 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEE-LNSP-----------VKVVKTE 68 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHH-HTCC-----------CEEEEES
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHH-cCCC-----------eEEEEeC
Confidence 38999999998754 2233332 1 348999999999877654333322211 1111 2467788
Q ss_pred Cc-cCCCCcCEEEEcc
Q 009256 381 DY-SEFKDVDMVIEAV 395 (539)
Q Consensus 381 ~~-~~~~~aDlVi~av 395 (539)
|. +++++||+||.++
T Consensus 69 d~~eAl~gAD~Vi~~~ 84 (477)
T 3u95_A 69 SLDEAIEGADFIINTA 84 (477)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEECc
Confidence 88 7899999999886
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00054 Score=70.05 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=61.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|+|.+|..+|..+...|.+|+++|+++.+...+.. .| .. ..++ +.+++
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~-----------~G-------------~~-v~~Leeal~~ 275 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACM-----------DG-------------FR-LVKLNEVIRQ 275 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CE-ECCHHHHTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHH-----------cC-------------CE-eccHHHHHhc
Confidence 48999999999999999999999999999999875443311 11 11 1233 66889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+|+||.| +....+. -.+..+.++++.+++....+
T Consensus 276 ADIVi~a-tgt~~lI---~~e~l~~MK~gailINvgrg 309 (435)
T 3gvp_A 276 VDIVITC-TGNKNVV---TREHLDRMKNSCIVCNMGHS 309 (435)
T ss_dssp CSEEEEC-SSCSCSB---CHHHHHHSCTTEEEEECSST
T ss_pred CCEEEEC-CCCcccC---CHHHHHhcCCCcEEEEecCC
Confidence 9999997 3333221 12344567899988754443
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00034 Score=71.01 Aligned_cols=151 Identities=11% Similarity=0.047 Sum_probs=91.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|+|||.|..|.+-|.+|.++|++|++--|.....+.. +.+.++.+ +.+.+.+-.++++.|
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~-----~S~~~A~~-------------~Gf~v~~~~eA~~~A 99 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR-----ASWRKATE-------------NGFKVGTYEELIPQA 99 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTC-----HHHHHHHH-------------TTCEEEEHHHHGGGC
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCccccc-----chHHHHHH-------------CCCEecCHHHHHHhC
Confidence 589999999999999999999999998876633211110 00111122 234444333889999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCC--cEEEeccCCCC----------CCCCee
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQD--RIIGAHFFSPA----------HVMPLL 456 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~--r~vg~h~~~p~----------~~~~~v 456 (539)
|+|+.-+|+.. -..++++|.++++++..+.- +.+..+.. ..+..|. .++-+-|-.|- .-.|.+
T Consensus 100 DvV~~L~PD~~--q~~vy~~I~p~lk~G~~L~f-aHGFnI~~--~~i~pp~dvdVimVAPKgpG~~VR~~y~~G~GvP~l 174 (491)
T 3ulk_A 100 DLVINLTPDKQ--HSDVVRTVQPLMKDGAALGY-SHGFNIVE--VGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTL 174 (491)
T ss_dssp SEEEECSCGGG--HHHHHHHHGGGSCTTCEEEE-SSCHHHHT--TCCCCCTTSEEEEEEESSCHHHHHHHHHTTCCCCEE
T ss_pred CEEEEeCChhh--HHHHHHHHHhhCCCCCEEEe-cCcccccc--cccccCCCcceEEeCCCCCcHHHHHHHHcCCCCceE
Confidence 99999999654 45778899999999988763 44544432 1222222 23333332111 111222
Q ss_pred eee-cCCCCcHHHHHHHHHHHHHcCce
Q 009256 457 EIV-RTERTSAQVILDLMTVGKIIKKV 482 (539)
Q Consensus 457 ei~-~~~~t~~e~~~~~~~l~~~lg~~ 482 (539)
.-+ +-...+-.+.+.+..+...+|..
T Consensus 175 iAVhqeqD~sG~a~~~AlayA~aiG~~ 201 (491)
T 3ulk_A 175 IAVHPENDPKGEGMAIAKAWAAATGGH 201 (491)
T ss_dssp EEECGGGCTTSCHHHHHHHHHHHHTGG
T ss_pred EEEEeCCCCchhHHHHHHHHHHhcCCC
Confidence 222 11233456778888888888853
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00076 Score=59.27 Aligned_cols=39 Identities=8% Similarity=-0.028 Sum_probs=34.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC-hHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN-SEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~ 347 (539)
++|.|+|+|.+|..++..|.+.|++|+++|++ +++.+..
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~ 43 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQL 43 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHH
Confidence 47999999999999999999999999999998 4555444
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0004 Score=68.78 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=61.0
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHC-C--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc---cCC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILN-N--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG---VLD 381 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~-G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~ 381 (539)
+||+||| +|.+|.+++..|... + .+++++|+++ ..+....++ ...... -.++. +.+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl--------~~~~~~--------~~v~~~~~~~~ 63 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDL--------SHIPTA--------VKIKGFSGEDA 63 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHH--------HTSCSS--------EEEEEECSSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHh--------hCCCCC--------ceEEEecCCCc
Confidence 4899999 899999999999875 5 4899999997 332111111 111000 12322 245
Q ss_pred ccCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 382 YSEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 382 ~~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++++++||+||.+... +..+.+.+.+.+.++.++ ++++..+
T Consensus 64 ~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~-a~vlvvt 118 (312)
T 3hhp_A 64 TPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPK-ACIGIIT 118 (312)
T ss_dssp HHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-SEEEECS
T ss_pred HHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEec
Confidence 5889999999998732 223445555667788754 4444333
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00032 Score=69.83 Aligned_cols=71 Identities=10% Similarity=-0.012 Sum_probs=50.1
Q ss_pred CcceEEEEcCCCCcHH-HHHHHHH-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 307 GVRKVAVIGGGLMGSG-IATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~-iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
+..+|+|||+|.||.. ++..+.+ .|++|+ ++|+++++.+.+.+.. | +...++++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~----------g-------------~~~~~~~~ 60 (319)
T 1tlt_A 4 KKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------R-------------IPYADSLS 60 (319)
T ss_dssp -CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------T-------------CCBCSSHH
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------C-------------CCccCcHH
Confidence 3458999999999997 8888876 477876 8999998876653321 1 12334443
Q ss_pred CC-CCcCEEEEcccCChh
Q 009256 384 EF-KDVDMVIEAVIESVP 400 (539)
Q Consensus 384 ~~-~~aDlVi~avpe~~~ 400 (539)
.+ .++|+|++++|....
T Consensus 61 ~l~~~~D~V~i~tp~~~h 78 (319)
T 1tlt_A 61 SLAASCDAVFVHSSTASH 78 (319)
T ss_dssp HHHTTCSEEEECSCTTHH
T ss_pred HhhcCCCEEEEeCCchhH
Confidence 33 679999999996654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00046 Score=65.71 Aligned_cols=86 Identities=21% Similarity=0.156 Sum_probs=57.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~-~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
|.||+|+|+|.||..++..+.+.+++++. +|++++. . ..+..+++++.+.
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----------------~-------------~gv~v~~dl~~l~ 53 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----------------T-------------TPYQQYQHIADVK 53 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------------------------------CCSCBCSCTTTCT
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----------------c-------------CCCceeCCHHHHh
Confidence 57999999999999999999988777664 7887651 0 1244556664433
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
++|+||+... ++. +...+. +..+.-+++.|++++..
T Consensus 54 ~~DVvIDft~--p~a---~~~~~~--l~~g~~vVigTTG~s~e 89 (243)
T 3qy9_A 54 GADVAIDFSN--PNL---LFPLLD--EDFHLPLVVATTGEKEK 89 (243)
T ss_dssp TCSEEEECSC--HHH---HHHHHT--SCCCCCEEECCCSSHHH
T ss_pred CCCEEEEeCC--hHH---HHHHHH--HhcCCceEeCCCCCCHH
Confidence 9999997764 222 222232 56666556667777654
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=72.45 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
++|.|||+|.||.+++..|++.|. +|+++||++++++.+.+
T Consensus 142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~ 183 (297)
T 2egg_A 142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVR 183 (297)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHH
T ss_pred CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence 479999999999999999999998 99999999988776643
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=8.2e-05 Score=76.02 Aligned_cols=98 Identities=19% Similarity=0.177 Sum_probs=62.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|+|.+|..++..+...|.+|+++|+++++++.+.+.. |.--. -......++ +.+++
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~----------g~~~~-------~~~~~~~~l~~~l~~ 231 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF----------CGRIH-------TRYSSAYELEGAVKR 231 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TTSSE-------EEECCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc----------CCeeE-------eccCCHHHHHHHHcC
Confidence 5899999999999999999999999999999998877653311 10000 000000111 34568
Q ss_pred cCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+|+||++++.... ...-+.++..+.++++.+|+..+
T Consensus 232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 9999998843221 11111234456678888776544
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00073 Score=68.29 Aligned_cols=70 Identities=24% Similarity=0.110 Sum_probs=52.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.. .+...+++ +.+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~-----------------------g~~~~~~~~~~l 62 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY-----------------------NCAGDATMEALL 62 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH-----------------------TCCCCSSHHHHH
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-----------------------CCCCcCCHHHHh
Confidence 4899999999999999999876 78865 8899999877654321 12234455 444
Q ss_pred --CCcCEEEEcccCChhH
Q 009256 386 --KDVDMVIEAVIESVPL 401 (539)
Q Consensus 386 --~~aDlVi~avpe~~~~ 401 (539)
.++|+|++|+|.....
T Consensus 63 ~~~~~D~V~i~tp~~~h~ 80 (354)
T 3db2_A 63 AREDVEMVIITVPNDKHA 80 (354)
T ss_dssp HCSSCCEEEECSCTTSHH
T ss_pred cCCCCCEEEEeCChHHHH
Confidence 5799999999977654
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00061 Score=68.13 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=61.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+.. .+. .+++ +.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~-----------------------~~~-~~~~~~~ 58 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY-----------------------GCE-VRTIDAI 58 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT-----------------------TCE-ECCHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh-----------------------CCC-cCCHHHH
Confidence 35899999999999999999885 77877 7899998877654321 122 3444 34
Q ss_pred CC--CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 009256 385 FK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (539)
Q Consensus 385 ~~--~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 430 (539)
+. ++|+|++|+|..... .+.....+. ...+++.-..+....+
T Consensus 59 l~~~~~D~V~i~tp~~~h~--~~~~~al~~--gk~v~~EKP~~~~~~~ 102 (331)
T 4hkt_A 59 EAAADIDAVVICTPTDTHA--DLIERFARA--GKAIFCEKPIDLDAER 102 (331)
T ss_dssp HHCTTCCEEEECSCGGGHH--HHHHHHHHT--TCEEEECSCSCSSHHH
T ss_pred hcCCCCCEEEEeCCchhHH--HHHHHHHHc--CCcEEEecCCCCCHHH
Confidence 44 799999999976653 333333222 1234443333555554
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.30 E-value=4.2e-05 Score=73.58 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=34.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 347 (539)
+|+|||+|.||.+++..|.+.|. +|+++||++++++.+
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l 148 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL 148 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 79999999999999999999998 999999999876654
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00041 Score=69.55 Aligned_cols=103 Identities=16% Similarity=0.173 Sum_probs=65.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
-||+|+|+ |.+|.+++..|+.... ++.+||+++.. ++...-+++. .... ....+..
T Consensus 25 vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~--------~~~~------~~~~~~~ 90 (345)
T 4h7p_A 25 VKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELED--------CAFP------LLDKVVV 90 (345)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TTCT------TEEEEEE
T ss_pred CEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhh--------cCcc------CCCcEEE
Confidence 48999996 9999999999988654 89999998643 2221111111 0000 0122334
Q ss_pred cCCc-cCCCCcCEEEEcc--cC------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 379 VLDY-SEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 379 ~~~~-~~~~~aDlVi~av--pe------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+++. +++++||+||++. |- +..+.+.+.+.|.++.+++++|+..+..
T Consensus 91 ~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNP 152 (345)
T 4h7p_A 91 TADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNP 152 (345)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred cCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 4444 7899999999875 21 3345556666788888888865544433
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00038 Score=71.29 Aligned_cols=86 Identities=17% Similarity=0.213 Sum_probs=60.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+...|.+|+++|+++.....+. ..| ... .++ +.++.
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~-----------~~G-------------~~v-v~LeElL~~ 302 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA-----------MDG-------------FEV-VTLDDAAST 302 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH-----------HTT-------------CEE-CCHHHHGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH-----------hcC-------------cee-ccHHHHHhh
Confidence 4899999999999999999999999999999987543321 111 111 123 66789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
||+|+.+....--+. ++....++++++|+...
T Consensus 303 ADIVv~atgt~~lI~----~e~l~~MK~GAILINvG 334 (464)
T 3n58_A 303 ADIVVTTTGNKDVIT----IDHMRKMKDMCIVGNIG 334 (464)
T ss_dssp CSEEEECCSSSSSBC----HHHHHHSCTTEEEEECS
T ss_pred CCEEEECCCCccccC----HHHHhcCCCCeEEEEcC
Confidence 999999864322111 34456789999887433
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00019 Score=70.11 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=51.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
+++.|+|+|.+|.+++..|++.|. +|++++|++++.+.+.+.+.. .+ .+... ++ +...
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~-------~~------------~~~~~-~~~~l~~ 186 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAA-------YG------------EVKAQ-AFEQLKQ 186 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGG-------GS------------CEEEE-EGGGCCS
T ss_pred CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhc-------cC------------CeeEe-eHHHhcC
Confidence 479999999999999999999996 999999999988776554310 01 01111 12 2227
Q ss_pred CcCEEEEcccCCh
Q 009256 387 DVDMVIEAVIESV 399 (539)
Q Consensus 387 ~aDlVi~avpe~~ 399 (539)
++|+||.++|...
T Consensus 187 ~aDiIInaTp~gm 199 (281)
T 3o8q_A 187 SYDVIINSTSASL 199 (281)
T ss_dssp CEEEEEECSCCCC
T ss_pred CCCEEEEcCcCCC
Confidence 8999999998554
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0007 Score=68.33 Aligned_cols=74 Identities=16% Similarity=0.038 Sum_probs=52.3
Q ss_pred CCCcceEEEEcCCCCcH-HHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 305 PRGVRKVAVIGGGLMGS-GIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 305 ~~~~~kI~iIG~G~mG~-~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
+++..||+|||+|.||. .++..+.+. +++|+ ++|+++++.+...+.. .+...++
T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~ 80 (350)
T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF-----------------------GGEPVEG 80 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH-----------------------CSEEEES
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc-----------------------CCCCcCC
Confidence 34446899999999998 788888887 77876 8899998877654321 1222345
Q ss_pred c-cCCC--CcCEEEEcccCChhH
Q 009256 382 Y-SEFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 382 ~-~~~~--~aDlVi~avpe~~~~ 401 (539)
+ +.+. +.|+|++|+|.+...
T Consensus 81 ~~~ll~~~~~D~V~i~tp~~~h~ 103 (350)
T 3rc1_A 81 YPALLERDDVDAVYVPLPAVLHA 103 (350)
T ss_dssp HHHHHTCTTCSEEEECCCGGGHH
T ss_pred HHHHhcCCCCCEEEECCCcHHHH
Confidence 5 3343 689999999976653
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00035 Score=67.50 Aligned_cols=65 Identities=17% Similarity=0.127 Sum_probs=50.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+++.|||+|.||.+++..|++.|.+|++++|++++.+.+. ++ + +.. .+++.+.++
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~----------~-------------~~~-~~~~~l~~~ 173 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL----------G-------------CDC-FMEPPKSAF 173 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH----------T-------------CEE-ESSCCSSCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC----------C-------------CeE-ecHHHhccC
Confidence 4799999999999999999999999999999998877663 21 0 111 122344589
Q ss_pred CEEEEcccCC
Q 009256 389 DMVIEAVIES 398 (539)
Q Consensus 389 DlVi~avpe~ 398 (539)
|+||.++|..
T Consensus 174 DiVInaTp~G 183 (269)
T 3phh_A 174 DLIINATSAS 183 (269)
T ss_dssp SEEEECCTTC
T ss_pred CEEEEcccCC
Confidence 9999999854
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00047 Score=59.85 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=54.9
Q ss_pred ceEEEEcC----CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
++|+|||+ |.+|..++.+|.+.||+ +|++|+.+... . ...+....++ +
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~---~----------------------i~G~~~~~sl~e 66 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE---E----------------------LFGEEAVASLLD 66 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS---E----------------------ETTEECBSSGGG
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC---c----------------------CCCEEecCCHHH
Confidence 37999999 89999999999999997 66777652110 0 0123444555 3
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
.-...|+++.++|. +....+++++.+.-.. .+++
T Consensus 67 l~~~vDlavi~vp~--~~~~~v~~~~~~~gi~-~i~~ 100 (140)
T 1iuk_A 67 LKEPVDILDVFRPP--SALMDHLPEVLALRPG-LVWL 100 (140)
T ss_dssp CCSCCSEEEECSCH--HHHTTTHHHHHHHCCS-CEEE
T ss_pred CCCCCCEEEEEeCH--HHHHHHHHHHHHcCCC-EEEE
Confidence 34579999999984 4555666666554333 4544
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00018 Score=73.21 Aligned_cols=98 Identities=15% Similarity=0.197 Sum_probs=60.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|+|+|.+|..++..+...|.+|+++|+++++++.+.+.. +. ... .......+. +.+++
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~----------g~-~~~------~~~~~~~~l~~~~~~ 229 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF----------GG-RVI------TLTATEANIKKSVQH 229 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------TT-SEE------EEECCHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc----------Cc-eEE------EecCCHHHHHHHHhC
Confidence 5899999999999999999999999999999998876653211 10 000 000000111 34568
Q ss_pred cCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+|+||.+++.... ....+.++..+.++++.+|+..+
T Consensus 230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence 9999999974321 11111344556677777766444
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.012 Score=62.29 Aligned_cols=145 Identities=15% Similarity=0.058 Sum_probs=95.2
Q ss_pred EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH
Q 009256 17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (539)
Q Consensus 17 ~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (539)
.|.-+... .-++.....+.+..+++.+.+. .+-+|.|.- |.|+.+.+-... ...+. +.+ .++
T Consensus 111 ~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~~s-----l~~~~----~i~-~~~ 174 (548)
T 2bzr_A 111 CIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVVS-----LGLYS----RIF-RNN 174 (548)
T ss_dssp EEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTTHH-----HHHHH----HHH-HHH
T ss_pred EEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHHHH-----HHHHH----HHH-HHH
Confidence 34444443 3799999999999999988765 456777765 456665432110 11111 222 122
Q ss_pred H--hCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCH
Q 009256 95 E--DCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITS 171 (539)
Q Consensus 95 ~--~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a 171 (539)
. .-..|.|+.+.|+|.||+......||++|+.++ +.+++. |+...+. .+|+.++.
T Consensus 175 ~~~s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~--~~ge~v~~ 232 (548)
T 2bzr_A 175 ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT--VTGEEVTM 232 (548)
T ss_dssp HHTTTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH--HHCCCCCH
T ss_pred HHhcCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH--HhCCcCCh
Confidence 2 334999999999999999988889999999987 877765 3222222 35778876
Q ss_pred H-----HH--HHcCCcceecCcc-hHHHHHHHHHHH
Q 009256 172 E-----EG--WKLGLIDAVVTSE-ELLKVSRLWALD 199 (539)
Q Consensus 172 ~-----eA--~~~Glv~~vv~~~-~l~~~a~~~a~~ 199 (539)
+ |. .+.|++|.+++++ ++.+.+.++..-
T Consensus 233 e~lggae~h~~~sG~~d~vv~d~~~~~~~~r~lls~ 268 (548)
T 2bzr_A 233 EELGGAHTHMAKSGTAHYAASGEQDAFDYVRELLSY 268 (548)
T ss_dssp HHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHTT
T ss_pred HhcccHHHHhhccCceeEEeCCHHHHHHHHHHHHHh
Confidence 4 22 3689999999854 455555554433
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00092 Score=67.24 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=51.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.||+|||+|.||..++..+.+. +++|+ ++|+++++++.+.+.. +.....+++ +.+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~----------------------~~~~~~~~~~~ll 60 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKL----------------------GVEKAYKDPHELI 60 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHH----------------------TCSEEESSHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHh----------------------CCCceeCCHHHHh
Confidence 4899999999999999999875 67776 7899998877654321 111234455 444
Q ss_pred C--CcCEEEEcccCChh
Q 009256 386 K--DVDMVIEAVIESVP 400 (539)
Q Consensus 386 ~--~aDlVi~avpe~~~ 400 (539)
. ++|+|++|+|....
T Consensus 61 ~~~~~D~V~i~tp~~~h 77 (344)
T 3ezy_A 61 EDPNVDAVLVCSSTNTH 77 (344)
T ss_dssp HCTTCCEEEECSCGGGH
T ss_pred cCCCCCEEEEcCCCcch
Confidence 4 79999999997654
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.01 Score=62.53 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=97.2
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.-+... .-++.....+.+..+++.+.+. .+-+|.|.- |.|+.+.+-... ...+.+.+.... + +
T Consensus 99 v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~s-----l~~~~~i~~~~~-~-~- 164 (523)
T 1on3_A 99 AASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFANV-K-L- 164 (523)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHHHH-H-H-
T ss_pred EEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHHH-----HHHHHHHHHHHH-H-h-
Confidence 3334443 4789999999999999988765 456777764 456666542210 111222222221 1 2
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHH---
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE--- 172 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~--- 172 (539)
.-..|.|+.+.|+|.||+......||++|+.+++.+++. |+...+. .+|+.++.+
T Consensus 165 s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~--~~ge~~~~e~lg 222 (523)
T 1on3_A 165 SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS--VTGEDVTADELG 222 (523)
T ss_dssp TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH--HHCCCCCHHHHH
T ss_pred cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH--HhCCcCChHhcc
Confidence 345999999999999999999999999999999888765 2222211 357778764
Q ss_pred --HHH--HcCCcceecCcc-hHHHHHHHHHHHH
Q 009256 173 --EGW--KLGLIDAVVTSE-ELLKVSRLWALDI 200 (539)
Q Consensus 173 --eA~--~~Glv~~vv~~~-~l~~~a~~~a~~l 200 (539)
|.+ +.|++|.+++++ ++.+.+.++..-+
T Consensus 223 gae~h~~~~G~vd~vv~d~~~~~~~~r~lL~~l 255 (523)
T 1on3_A 223 GAEAHMAISGNIHFVAEDDDAAELIAKKLLSFL 255 (523)
T ss_dssp SHHHHHHTTCCCSEEESSHHHHHHHHHHHHHTS
T ss_pred cHHHHhhccCceEEEeCCHHHHHHHHHHHHHhc
Confidence 323 689999999854 5666666665444
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0017 Score=64.60 Aligned_cols=70 Identities=20% Similarity=0.072 Sum_probs=50.1
Q ss_pred ceEEEEcCCCCcH-HHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccc-ccCCccCC
Q 009256 309 RKVAVIGGGLMGS-GIATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLK-GVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~-~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~ 385 (539)
.||+|||+|.||. .++..+.+. +++|+++|+++++.+.+.+.. + .-. +.++.+.+
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~----------g------------~~~~~~~~~~~l 60 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY----------R------------VSATCTDYRDVL 60 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHT----------T------------CCCCCSSTTGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHc----------C------------CCccccCHHHHh
Confidence 4899999999998 488888764 778889999998877653321 1 001 22333555
Q ss_pred -CCcCEEEEcccCChh
Q 009256 386 -KDVDMVIEAVIESVP 400 (539)
Q Consensus 386 -~~aDlVi~avpe~~~ 400 (539)
.++|+|++|+|....
T Consensus 61 ~~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 61 QYGVDAVMIHAATDVH 76 (323)
T ss_dssp GGCCSEEEECSCGGGH
T ss_pred hcCCCEEEEECCchhH
Confidence 689999999996553
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=97.16 E-value=0.02 Score=60.50 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=95.7
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.-|... .-++.+...+.+..+++.+.+. .+-+|.|.-.| |+.+.+-.+... ....+...+..+. .+.
T Consensus 125 V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lPvI~l~dSg-----GARl~~q~~~~~--~~~~~~~i~~~~~--~ls 194 (555)
T 3u9r_B 125 IVGNDATVKGGTYYPLTVKKHLRAQAIALEN-RLPCIYLVDSG-----GANLPRQDEVFP--DREHFGRIFFNQA--NMS 194 (555)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEECCC-----CBCGGGGGGTSS--STTSTTHHHHHHH--HHH
T ss_pred EEEECCccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEECCC-----CCCCCCcceeec--ccccHHHHHHHHH--HHh
Confidence 3334443 3789999999999999988766 45567665433 333321111000 0112233332222 366
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCEEEeeC-CceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHH
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG 174 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA 174 (539)
....|+|+.|.|.|.|||......||++|+.+ ++.+++ -|+...+ ..+|+.+++++.
T Consensus 195 ~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~--------------------aGP~vik--~~~ge~~~~e~L 252 (555)
T 3u9r_B 195 ARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFL--------------------AGPPLVK--AATGEVVSAEEL 252 (555)
T ss_dssp HTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBS--------------------SCHHHHH--HHHCCCCCHHHH
T ss_pred cCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEE--------------------ccHHHHH--HHhcCccChhhc
Confidence 77899999999999999999999999998875 454433 1222111 157899999988
Q ss_pred -------HHcCCcceecCcch-HHHHHHHHHHH
Q 009256 175 -------WKLGLIDAVVTSEE-LLKVSRLWALD 199 (539)
Q Consensus 175 -------~~~Glv~~vv~~~~-l~~~a~~~a~~ 199 (539)
...|++|.++++++ ....++++...
T Consensus 253 GGa~~h~~~sGv~d~v~~de~~a~~~~r~~ls~ 285 (555)
T 3u9r_B 253 GGADVHCKVSGVADHYAEDDDHALAIARRCVAN 285 (555)
T ss_dssp HBHHHHHHTTCSCSEEESSHHHHHHHHHHHHHT
T ss_pred cchhhhhhccCceeEEeCCHHHHHHHHHHHHHh
Confidence 78999999998764 33444444433
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00049 Score=66.89 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=37.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|+|+|.||.+++..|++.|.+|+++||++++++.+.+.
T Consensus 120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~ 161 (272)
T 1p77_A 120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAER 161 (272)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 479999999999999999999999999999999887776543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0012 Score=66.80 Aligned_cols=70 Identities=23% Similarity=0.164 Sum_probs=50.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
..||+|||+|.||...+..+.+. +++|+ ++|+++++.+.+. +. .+...+++ +.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~-----------~~-------------g~~~~~~~~~l 60 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA-----------QK-------------GLKIYESYEAV 60 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH-----------TT-------------TCCBCSCHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH-----------hc-------------CCceeCCHHHH
Confidence 35899999999999999988876 67776 6799998765321 11 13344555 33
Q ss_pred CC--CcCEEEEcccCChhH
Q 009256 385 FK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 385 ~~--~aDlVi~avpe~~~~ 401 (539)
+. ++|+|++|+|.....
T Consensus 61 l~~~~~D~V~i~tp~~~h~ 79 (359)
T 3e18_A 61 LADEKVDAVLIATPNDSHK 79 (359)
T ss_dssp HHCTTCCEEEECSCGGGHH
T ss_pred hcCCCCCEEEEcCCcHHHH
Confidence 43 799999999976643
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00089 Score=66.44 Aligned_cols=68 Identities=21% Similarity=0.105 Sum_probs=49.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
..||+|||+|.||..++..+.+. ++++ .++|+++++.+.+.+ .+...+++ +.
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~-------------------------~~~~~~~~~~~ 64 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP-------------------------GCVIESDWRSV 64 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT-------------------------TCEEESSTHHH
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh-------------------------hCcccCCHHHH
Confidence 35899999999999999999885 6765 489999876554311 02234455 44
Q ss_pred CC--CcCEEEEcccCChh
Q 009256 385 FK--DVDMVIEAVIESVP 400 (539)
Q Consensus 385 ~~--~aDlVi~avpe~~~ 400 (539)
++ ++|+|++++|....
T Consensus 65 l~~~~~D~V~i~tp~~~h 82 (315)
T 3c1a_A 65 VSAPEVEAVIIATPPATH 82 (315)
T ss_dssp HTCTTCCEEEEESCGGGH
T ss_pred hhCCCCCEEEEeCChHHH
Confidence 43 79999999996654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0012 Score=63.92 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=50.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|-+|.+++..|...|. +|++++|++++.+.+.+.+ + .....+.. +.+
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~----------~-------------~~~~~~~~-~~~ 175 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY----------G-------------YAYINSLE-NQQ 175 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH----------T-------------CEEESCCT-TCC
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------C-------------Cccchhhh-ccc
Confidence 479999999999999999999997 8999999998877764432 0 01111122 467
Q ss_pred cCEEEEcccCCh
Q 009256 388 VDMVIEAVIESV 399 (539)
Q Consensus 388 aDlVi~avpe~~ 399 (539)
+|+||.++|...
T Consensus 176 ~DivInaTp~gm 187 (271)
T 1npy_A 176 ADILVNVTSIGM 187 (271)
T ss_dssp CSEEEECSSTTC
T ss_pred CCEEEECCCCCc
Confidence 999999998443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.016 Score=61.06 Aligned_cols=153 Identities=14% Similarity=0.081 Sum_probs=99.5
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 13 ~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+.-..|.-+... .-++.....+.+..+++.+.+. .+-+|.|+. |.|+.+.+-... ...+.+.+....
T Consensus 90 Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~s-----l~~~~~i~~~~~ 158 (522)
T 1x0u_A 90 GRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGALS-----LEGYGAVFKMNV 158 (522)
T ss_dssp TEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHHH-----HHHHHHHHHHHH
T ss_pred CEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHHH-----HHHHHHHHHHHH
Confidence 333334444443 3789999999999999988765 466777775 456666542210 111222222221
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-c-eEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-T-QLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a-~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~ 168 (539)
+ ..-..|.|+.+.|+|.||+......||++|+.++ + .+++. |+...+. .+|+.
T Consensus 159 -~--~s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a--------------------GP~vI~~--~~ge~ 213 (522)
T 1x0u_A 159 -M--ASGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT--------------------GPEITKV--VLGEE 213 (522)
T ss_dssp -H--HTTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESS--------------------CHHHHHH--TTCCC
T ss_pred -H--hCCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEec--------------------CHHHHHH--HhCCc
Confidence 1 2345999999999999999999999999999987 7 77652 2211111 46777
Q ss_pred CCHH-----HHH--HcCCcceecCc-chHHHHHHHHHHHHH
Q 009256 169 ITSE-----EGW--KLGLIDAVVTS-EELLKVSRLWALDIA 201 (539)
Q Consensus 169 ~~a~-----eA~--~~Glv~~vv~~-~~l~~~a~~~a~~la 201 (539)
++.+ |.+ +.|++|.++++ .++.+.+.++..-+-
T Consensus 214 ~~~e~lggae~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp 254 (522)
T 1x0u_A 214 VSFQDLGGAVVHATKSGVVHFMVDSEQEAINLTKRLLSYLP 254 (522)
T ss_dssp CCHHHHHBHHHHHHTTCCCSEEESCHHHHHHHHHHHHHHSC
T ss_pred CChhhcchHHHHhhcCceeEEEeCCHHHHHHHHHHHHHhcc
Confidence 7764 223 68999999985 457676666665554
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.001 Score=67.25 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=36.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|+|+|+|.||..+|..|...|.+|+++|+++++++...
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a 213 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV 213 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 4799999999999999999999999999999998776553
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00031 Score=73.08 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=45.4
Q ss_pred ccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 490 TGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 490 ~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
...+..|++++++||+..++++|| +++|||.++ .|+|||. |||+++|.++
T Consensus 355 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~GfP~~~GGp~~~~d~~G 410 (460)
T 3k6j_A 355 DQDVINFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFGKTEG 410 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTCCCSEETTEECBCSSCBS
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHhcCCCCccccCHHHHHHHhC
Confidence 346889999999999999999997 699999999 8999987 9999999764
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.002 Score=64.67 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=50.4
Q ss_pred CcceEEEEcCCCCcHHHHHHHH-H-CCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 307 GVRKVAVIGGGLMGSGIATAHI-L-NNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~-~-~G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
++.+|+|||+|.||..++..+. + .|++| .++|+++++++.+.+. .| .....+++
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~----------~g------------~~~~~~~~~ 64 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE----------LG------------VETTYTNYK 64 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT----------TC------------CSEEESCHH
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH----------hC------------CCcccCCHH
Confidence 3458999999999999999988 4 47775 5789999887654321 01 11223445
Q ss_pred cCCC--CcCEEEEcccCChh
Q 009256 383 SEFK--DVDMVIEAVIESVP 400 (539)
Q Consensus 383 ~~~~--~aDlVi~avpe~~~ 400 (539)
+.+. ++|+|++|+|....
T Consensus 65 ~~l~~~~~D~V~i~tp~~~h 84 (346)
T 3cea_A 65 DMIDTENIDAIFIVAPTPFH 84 (346)
T ss_dssp HHHTTSCCSEEEECSCGGGH
T ss_pred HHhcCCCCCEEEEeCChHhH
Confidence 3343 69999999996654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0021 Score=66.29 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|.|.+|..++..|.+.|++|+++|.|++.++.+.
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~ 44 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLR 44 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 3699999999999999999999999999999999888763
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00097 Score=64.74 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=37.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|.||.+++..|++.|.+|+++||++++++.+.+
T Consensus 120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~ 160 (271)
T 1nyt_A 120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK 160 (271)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence 47999999999999999999999999999999988776644
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0018 Score=56.38 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=54.1
Q ss_pred ceEEEEcC----CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
++|+|||+ |.+|..++.+|.+.||+ +|++|+.. +.. ..+....++ +
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--------------------------~G~~~y~sl~~ 73 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV--------------------------LGRKCYPSVLD 73 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE--------------------------TTEECBSSGGG
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE--------------------------CCeeccCCHHH
Confidence 47999999 79999999999999997 56666542 100 123444555 3
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
....+|+++.++|. +....++.++.+.-. ..++.
T Consensus 74 l~~~vDlvvi~vp~--~~~~~vv~~~~~~gi-~~i~~ 107 (144)
T 2d59_A 74 IPDKIEVVDLFVKP--KLTMEYVEQAIKKGA-KVVWF 107 (144)
T ss_dssp CSSCCSEEEECSCH--HHHHHHHHHHHHHTC-SEEEE
T ss_pred cCCCCCEEEEEeCH--HHHHHHHHHHHHcCC-CEEEE
Confidence 34579999999994 555677776655432 34543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0024 Score=63.69 Aligned_cols=69 Identities=19% Similarity=0.105 Sum_probs=49.3
Q ss_pred eEEEEcCCCCcHHH-HHHHHHCCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 310 KVAVIGGGLMGSGI-ATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 310 kI~iIG~G~mG~~i-A~~l~~~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
||+|||+|.||..+ +..+.+.|++|+ ++|+++++.+...+.. + .....+++ +.+.
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~----------g------------~~~~~~~~~~~l~ 59 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATEN----------G------------IGKSVTSVEELVG 59 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHT----------T------------CSCCBSCHHHHHT
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHc----------C------------CCcccCCHHHHhc
Confidence 79999999999998 778877788866 7899998876553311 1 11233455 3344
Q ss_pred --CcCEEEEcccCChh
Q 009256 387 --DVDMVIEAVIESVP 400 (539)
Q Consensus 387 --~aDlVi~avpe~~~ 400 (539)
++|+|++++|....
T Consensus 60 ~~~~D~V~i~tp~~~h 75 (332)
T 2glx_A 60 DPDVDAVYVSTTNELH 75 (332)
T ss_dssp CTTCCEEEECSCGGGH
T ss_pred CCCCCEEEEeCChhHh
Confidence 59999999996654
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0016 Score=65.49 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=51.7
Q ss_pred ceEEEEcCCCCcHHHHHHHH-H-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|||+|.||..++..+. + .+++|+ ++|+++++++...+.. +. .....+++ +.
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~----------g~-----------~~~~~~~~~~l 61 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY----------QL-----------NATVYPNDDSL 61 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT----------TC-----------CCEEESSHHHH
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh----------CC-----------CCeeeCCHHHH
Confidence 48999999999999999998 4 477766 7899998877653321 10 12344555 33
Q ss_pred CC--CcCEEEEcccCChhH
Q 009256 385 FK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 385 ~~--~aDlVi~avpe~~~~ 401 (539)
+. ++|+|++|+|.....
T Consensus 62 l~~~~~D~V~i~tp~~~h~ 80 (344)
T 3mz0_A 62 LADENVDAVLVTSWGPAHE 80 (344)
T ss_dssp HHCTTCCEEEECSCGGGHH
T ss_pred hcCCCCCEEEECCCchhHH
Confidence 43 499999999976653
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00053 Score=70.63 Aligned_cols=71 Identities=20% Similarity=0.362 Sum_probs=51.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+|||+|.||..++..+...|. +|+++|+++++.+...+.+ |. ..+. ..++ +.+.
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~----------g~----------~~~~-~~~l~~~l~ 226 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------GG----------EAVR-FDELVDHLA 226 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------TC----------EECC-GGGHHHHHH
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----------CC----------ceec-HHhHHHHhc
Confidence 489999999999999999999998 9999999998765443221 10 0011 1122 4457
Q ss_pred CcCEEEEcccCChh
Q 009256 387 DVDMVIEAVIESVP 400 (539)
Q Consensus 387 ~aDlVi~avpe~~~ 400 (539)
++|+||++++....
T Consensus 227 ~aDvVi~at~~~~~ 240 (404)
T 1gpj_A 227 RSDVVVSATAAPHP 240 (404)
T ss_dssp TCSEEEECCSSSSC
T ss_pred CCCEEEEccCCCCc
Confidence 89999999986543
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00038 Score=69.57 Aligned_cols=98 Identities=18% Similarity=0.147 Sum_probs=63.0
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCC--e-----EEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNI--Y-----VVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~--~-----V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
.||+|+| +|.+|.+++..|+..|+ + ++++|+++ +.++.....+.+ .... ....+..
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~--------~~~~------~~~~~~~ 69 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQD--------CALP------LLKDVIA 69 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHH--------TCCT------TEEEEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHh--------hhhc------ccCCEEE
Confidence 5899999 79999999999998886 6 99999975 233332222211 0000 0022333
Q ss_pred cCC-ccCCCCcCEEEEcc--cC------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 379 VLD-YSEFKDVDMVIEAV--IE------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 379 ~~~-~~~~~~aDlVi~av--pe------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
.++ ++++++||+||.+. |. +....+.+.+.+.++.+++..++
T Consensus 70 ~~~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vi 126 (333)
T 5mdh_A 70 TDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI 126 (333)
T ss_dssp ESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred cCCcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 444 47899999999875 21 23455666677888887775333
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0023 Score=64.66 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=52.8
Q ss_pred CcceEEEEcCCCCcHHHHHHHH-H-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhh-cccccCCc
Q 009256 307 GVRKVAVIGGGLMGSGIATAHI-L-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALK-MLKGVLDY 382 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~-~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~ 382 (539)
...||+|||+|.||..++..+. + .+++|+ ++|+++++++...+.. + .....+++
T Consensus 22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~----------------------g~~~~~~~~~ 79 (357)
T 3ec7_A 22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY----------------------AIEAKDYNDY 79 (357)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH----------------------TCCCEEESSH
T ss_pred CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh----------------------CCCCeeeCCH
Confidence 3458999999999999999998 4 477866 7899999877664321 1 12334555
Q ss_pred -cCCC--CcCEEEEcccCChhH
Q 009256 383 -SEFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 383 -~~~~--~aDlVi~avpe~~~~ 401 (539)
+.+. ++|+|++|+|.....
T Consensus 80 ~~ll~~~~~D~V~i~tp~~~h~ 101 (357)
T 3ec7_A 80 HDLINDKDVEVVIITASNEAHA 101 (357)
T ss_dssp HHHHHCTTCCEEEECSCGGGHH
T ss_pred HHHhcCCCCCEEEEcCCcHHHH
Confidence 3343 689999999976653
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.002 Score=67.08 Aligned_cols=88 Identities=17% Similarity=0.181 Sum_probs=61.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|+|+|+|.+|.++|..|+..|.+|+++|+++...+.+.. .+ ....+..+.+..+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~-----------~g-------------~dv~~lee~~~~a 321 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATM-----------EG-------------LQVLTLEDVVSEA 321 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TT-------------CEECCGGGTTTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-----------hC-------------CccCCHHHHHHhc
Confidence 47999999999999999999999999999999887655422 11 1112112567889
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
|+|+++......+.. +..+.++++.+|+....
T Consensus 322 DvVi~atG~~~vl~~----e~l~~mk~gaiVvNaG~ 353 (488)
T 3ond_A 322 DIFVTTTGNKDIIML----DHMKKMKNNAIVCNIGH 353 (488)
T ss_dssp SEEEECSSCSCSBCH----HHHTTSCTTEEEEESSS
T ss_pred CEEEeCCCChhhhhH----HHHHhcCCCeEEEEcCC
Confidence 999988753322222 23456788888865443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00083 Score=65.56 Aligned_cols=43 Identities=16% Similarity=0.286 Sum_probs=38.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i 351 (539)
+++.|+|+|-+|.+++..|++.|. +|++++|++++.+.+.+.+
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~ 171 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVI 171 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 479999999999999999999998 7999999999888776554
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0018 Score=62.72 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=37.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|+|+|-+|.+++..|++.|. +|++++|++++.+.+.+.
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~ 163 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNE 163 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 589999999999999999999996 999999999988776543
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0009 Score=66.86 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=49.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
++.||+|||+|.||..++..+.+. +++|+ ++|+++++++...+. . +.-...+++ +
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~-----------~-----------~~~~~~~~~~~ 61 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANK-----------Y-----------HLPKAYDKLED 61 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---C-----------C-----------CCSCEESCHHH
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHH-----------c-----------CCCcccCCHHH
Confidence 446899999999999999988775 45655 779998876554221 0 111234555 4
Q ss_pred CCC--CcCEEEEcccCChhH
Q 009256 384 EFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 384 ~~~--~aDlVi~avpe~~~~ 401 (539)
.+. ++|+|++++|.....
T Consensus 62 ll~~~~~D~V~i~tp~~~h~ 81 (329)
T 3evn_A 62 MLADESIDVIYVATINQDHY 81 (329)
T ss_dssp HHTCTTCCEEEECSCGGGHH
T ss_pred HhcCCCCCEEEECCCcHHHH
Confidence 444 799999999976643
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00013 Score=70.94 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=34.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLK 346 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~ 346 (539)
++|.|+|+|.||.+++..|.+.|. +|++++|++++.+.
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~ 156 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNN 156 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 479999999999999999999999 99999999876554
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0023 Score=64.52 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=62.3
Q ss_pred cceEEEEc-CCCCcHHHHHHHHHCCC--e---EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-
Q 009256 308 VRKVAVIG-GGLMGSGIATAHILNNI--Y---VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL- 380 (539)
Q Consensus 308 ~~kI~iIG-~G~mG~~iA~~l~~~G~--~---V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~- 380 (539)
..||+||| +|.+|.+++..++..+. + |.++|.+.+..+...+...-.+ ...... ....+...+
T Consensus 32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL----~h~~~p------~~~~v~i~~~ 101 (375)
T 7mdh_A 32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMEL----EDSLYP------LLREVSIGID 101 (375)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH----HTTTCT------TEEEEEEESC
T ss_pred CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhH----Hhhhhh------hcCCcEEecC
Confidence 35899999 79999999999999875 3 8887665443222222111111 111100 001233333
Q ss_pred CccCCCCcCEEEEccc--C------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 381 DYSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 381 ~~~~~~~aDlVi~avp--e------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+++++++||+||.+.. - +..+.+.+...+.++..++++++..+.
T Consensus 102 ~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 102 PYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp HHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 4589999999998752 1 223444455557777566776665453
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0026 Score=62.75 Aligned_cols=84 Identities=13% Similarity=0.065 Sum_probs=50.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.||+|||+|.||..++..+.+ .+++|+ ++|+++++++. .|. .....+++....
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~--------------~g~-----------~~~~~~~l~~~~ 64 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF--------------ELQ-----------PFRVVSDIEQLE 64 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------------------CCT-----------TSCEESSGGGSS
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH--------------cCC-----------CcCCHHHHHhCC
Confidence 489999999999999999987 467887 78999875432 110 011123333337
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
++|+||+|+|..... .... ..+..+.-+++.
T Consensus 65 ~~DvViiatp~~~h~--~~~~---~al~aG~~Vi~e 95 (304)
T 3bio_A 65 SVDVALVCSPSREVE--RTAL---EILKKGICTADS 95 (304)
T ss_dssp SCCEEEECSCHHHHH--HHHH---HHHTTTCEEEEC
T ss_pred CCCEEEECCCchhhH--HHHH---HHHHcCCeEEEC
Confidence 899999999855432 3333 333445545443
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00075 Score=74.49 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=43.4
Q ss_pred hhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 493 AVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 493 v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
+..|++++++||+.+++++|| ++.|||.+| .|+|||. |||+++|.++
T Consensus 638 i~~R~l~~~~nEa~~~l~egI~~~~~diD~a~~~G~Gfp~~~GGp~~~~D~~G 690 (742)
T 3zwc_A 638 ILERCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYAASVG 690 (742)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHSCCCGGGCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhcCcCCCHHHHHHHHHhCcCCCCCcCCHHHHHHHHH
Confidence 678999999999999999997 899999999 8999998 9999999753
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.01 Score=62.71 Aligned_cols=164 Identities=14% Similarity=0.122 Sum_probs=102.5
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.-|+|.. -.++.+..+.+.+.++.+... .+-+|.|.-.+ .|..|.+-... .........+ .++.
T Consensus 329 via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds~-G~~~G~~~E~~----------G~~~~~Ak~l-~~~~ 395 (522)
T 1x0u_A 329 IVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDTP-GYVPGTDQEYK----------GIIRHGAKML-YAFA 395 (522)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCSHHHHHT----------THHHHHHHHH-HHHH
T ss_pred EEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecCC-CCCCchHHHHH----------HHHHHHHHHH-HHHH
Confidence 33455542 689999999999999988764 56677775332 24444321110 1112233455 5688
Q ss_pred hCCCcEEEEEcCccccchhHhhh----ccCEEEeeCCceEeCCcccCCCCCCcchhhccccc-c---------CHHHHHH
Q 009256 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---------GLSKAIE 161 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-v---------G~~~a~~ 161 (539)
+...|.|+.|-|.|.|||..... .+|+++|.++|.+++-. +-|....+-+. + -.....+
T Consensus 396 ~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~g-------pegaa~Il~r~~i~~~~d~~~~~~~l~~~ 468 (522)
T 1x0u_A 396 EATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTG-------PEGAVRILYRKEIQQASNPDDVLKQRIAE 468 (522)
T ss_dssp HCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTSSSSSSSSSSSSSSHHHHHH
T ss_pred hCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecC-------HHHHHHHHhhhhhhcccCHHHHHHHHHHH
Confidence 99999999999999999874443 49999999998887532 12222222111 1 1111111
Q ss_pred HHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
+ .-..-++..+.+.|+||.|+++.++.+......+.+...
T Consensus 469 y--~~~~~~~~~~~~~G~iD~II~p~~tR~~L~~~L~~~~~~ 508 (522)
T 1x0u_A 469 Y--RKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKTK 508 (522)
T ss_dssp H--HHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTC
T ss_pred H--HHhcCCHHHHHhcCCCcEeECHHHHHHHHHHHHHHHhhc
Confidence 1 011235678999999999999998887777766666443
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0041 Score=62.87 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=50.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+.+|+|||+|.||..++..+.+. ++++ .++|+++++.+...+.. + +. ......+++ +.
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~----------~-~~--------~~~~~~~~~~~l 66 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATAN----------N-YP--------ESTKIHGSYESL 66 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT----------T-CC--------TTCEEESSHHHH
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh----------C-CC--------CCCeeeCCHHHH
Confidence 35899999999999999998875 5666 58899998776553321 1 00 012234455 33
Q ss_pred CC--CcCEEEEcccCChh
Q 009256 385 FK--DVDMVIEAVIESVP 400 (539)
Q Consensus 385 ~~--~aDlVi~avpe~~~ 400 (539)
+. ++|+|++++|....
T Consensus 67 l~~~~~D~V~i~tp~~~h 84 (362)
T 1ydw_A 67 LEDPEIDALYVPLPTSLH 84 (362)
T ss_dssp HHCTTCCEEEECCCGGGH
T ss_pred hcCCCCCEEEEcCChHHH
Confidence 43 69999999996654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00066 Score=69.76 Aligned_cols=39 Identities=26% Similarity=0.160 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
.+|+|||+|.+|..++..+...|.+|+++|+++++.+.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 489999999999999999999999999999999877665
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0014 Score=66.49 Aligned_cols=73 Identities=26% Similarity=0.249 Sum_probs=49.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
-+||.|+|+|.+|+.++..|++ .++|+++|++.++++++.+. ...-.++..+ ..++ +.++
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~--------~~~~~~d~~d----------~~~l~~~~~ 76 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEF--------ATPLKVDASN----------FDKLVEVMK 76 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTT--------SEEEECCTTC----------HHHHHHHHT
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhcc--------CCcEEEecCC----------HHHHHHHHh
Confidence 3489999999999999998865 58999999999887765321 0000011000 0111 4468
Q ss_pred CcCEEEEcccCCh
Q 009256 387 DVDMVIEAVIESV 399 (539)
Q Consensus 387 ~aDlVi~avpe~~ 399 (539)
++|+||.|+|...
T Consensus 77 ~~DvVi~~~p~~~ 89 (365)
T 3abi_A 77 EFELVIGALPGFL 89 (365)
T ss_dssp TCSEEEECCCGGG
T ss_pred CCCEEEEecCCcc
Confidence 9999999998653
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0018 Score=64.76 Aligned_cols=71 Identities=15% Similarity=0.019 Sum_probs=51.1
Q ss_pred ceEEEEcCCCCcH-HHHHHHHHCCCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGS-GIATAHILNNIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~-~iA~~l~~~G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.+|+|||+|.+|. .++..+...|++| .++|+++++.+.+.+.. +.....+++ +.+
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~----------------------~~~~~~~~~~~ll 62 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLF----------------------PSVPFAASAEQLI 62 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHS----------------------TTCCBCSCHHHHH
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhc----------------------CCCcccCCHHHHh
Confidence 4899999999996 6777777778986 58899998876653321 123345555 334
Q ss_pred C--CcCEEEEcccCChhH
Q 009256 386 K--DVDMVIEAVIESVPL 401 (539)
Q Consensus 386 ~--~aDlVi~avpe~~~~ 401 (539)
. +.|+|++|+|.+...
T Consensus 63 ~~~~~D~V~i~tp~~~h~ 80 (336)
T 2p2s_A 63 TDASIDLIACAVIPCDRA 80 (336)
T ss_dssp TCTTCCEEEECSCGGGHH
T ss_pred hCCCCCEEEEeCChhhHH
Confidence 3 699999999976653
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0016 Score=65.97 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=49.9
Q ss_pred cceEEEEcCCCCcHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
..||+|||+|.||.. ++..+.+. +++|+ ++|+++++++.+.+. .+.....+++ +
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~----------------------~~~~~~~~~~~~ 62 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRF----------------------ISDIPVLDNVPA 62 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGT----------------------SCSCCEESSHHH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHh----------------------cCCCcccCCHHH
Confidence 458999999999985 88888775 67876 889999886654221 0123345566 3
Q ss_pred CCC--CcCEEEEcccCChh
Q 009256 384 EFK--DVDMVIEAVIESVP 400 (539)
Q Consensus 384 ~~~--~aDlVi~avpe~~~ 400 (539)
.+. +.|+|++|+|....
T Consensus 63 ll~~~~vD~V~i~tp~~~H 81 (359)
T 3m2t_A 63 MLNQVPLDAVVMAGPPQLH 81 (359)
T ss_dssp HHHHSCCSEEEECSCHHHH
T ss_pred HhcCCCCCEEEEcCCcHHH
Confidence 344 56999999995543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0019 Score=61.78 Aligned_cols=33 Identities=15% Similarity=0.311 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
++|.|||+|.+|+.++..|+..|. +++++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 379999999999999999999997 999999997
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.007 Score=62.84 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=52.2
Q ss_pred CCcceEEEEcCCCCcH-HHHHHHHHC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 306 RGVRKVAVIGGGLMGS-GIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~-~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+...||+|||+|.||. .++..+.+. +++| .++|+++++.+...+.. +. .. ..+...+++
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~----------g~-~~-------~~~~~~~~~ 142 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY----------GV-DP-------RKIYDYSNF 142 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT----------TC-CG-------GGEECSSSG
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh----------CC-Cc-------ccccccCCH
Confidence 4445899999999997 899888765 5675 58899998876553321 10 00 012234566
Q ss_pred -cCCC--CcCEEEEcccCChhH
Q 009256 383 -SEFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 383 -~~~~--~aDlVi~avpe~~~~ 401 (539)
+.+. ++|+|++|+|.....
T Consensus 143 ~~ll~~~~vD~V~iatp~~~h~ 164 (433)
T 1h6d_A 143 DKIAKDPKIDAVYIILPNSLHA 164 (433)
T ss_dssp GGGGGCTTCCEEEECSCGGGHH
T ss_pred HHHhcCCCCCEEEEcCCchhHH
Confidence 4444 799999999976643
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=55.32 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=49.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|.|+ |.+|..++..|++.|++|++++|+++..+..... +.... ....++ .++ +.++
T Consensus 22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~-----------~~~~~-----~~~Dl~--~~~~~~~~ 83 (236)
T 3e8x_A 22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER-----------GASDI-----VVANLE--EDFSHAFA 83 (236)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT-----------TCSEE-----EECCTT--SCCGGGGT
T ss_pred CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC-----------CCceE-----EEcccH--HHHHHHHc
Confidence 58999997 9999999999999999999999999876654220 10000 001111 333 6678
Q ss_pred CcCEEEEccc
Q 009256 387 DVDMVIEAVI 396 (539)
Q Consensus 387 ~aDlVi~avp 396 (539)
++|+||.+..
T Consensus 84 ~~D~vi~~ag 93 (236)
T 3e8x_A 84 SIDAVVFAAG 93 (236)
T ss_dssp TCSEEEECCC
T ss_pred CCCEEEECCC
Confidence 9999998875
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0013 Score=66.76 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=61.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|.|+|+|.+|..++..+...|.+|+++|+++++++.+.+... ..+..-..+. .+. +.+.+
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~----~~~~~~~~~~-------------~~~~~~~~~ 230 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG----SRVELLYSNS-------------AEIETAVAE 230 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG----GGSEEEECCH-------------HHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC----ceeEeeeCCH-------------HHHHHHHcC
Confidence 68999999999999999999999999999999998877643210 0000000000 011 34568
Q ss_pred cCEEEEcccCChhHHHH-HHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVPLKQK-IFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~-~~~~l~~~~~~~~ii~s~t 423 (539)
+|+||++++........ +.++..+.++++.++++..
T Consensus 231 ~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 231 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 99999999642210000 1123345567777766544
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0024 Score=62.48 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=51.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+++.|+|+|.+|.+++..|++.| +|++++|++++++.+.+.+.... ... . . -.+...+-.+.+.++
T Consensus 129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~----~~~---~-~-----~~~d~~~~~~~~~~~ 194 (287)
T 1nvt_A 129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL----NKK---F-G-----EEVKFSGLDVDLDGV 194 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH----TCC---H-H-----HHEEEECTTCCCTTC
T ss_pred CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhc----ccc---c-c-----eeEEEeeHHHhhCCC
Confidence 47999999999999999999999 99999999988777655432110 000 0 0 001111112567889
Q ss_pred CEEEEcccC
Q 009256 389 DMVIEAVIE 397 (539)
Q Consensus 389 DlVi~avpe 397 (539)
|+||.+++.
T Consensus 195 DilVn~ag~ 203 (287)
T 1nvt_A 195 DIIINATPI 203 (287)
T ss_dssp CEEEECSCT
T ss_pred CEEEECCCC
Confidence 999998873
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0028 Score=63.79 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=51.5
Q ss_pred CCcceEEEEcCCCCcHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
++|-||||||+|.||.. .+..+.+. +.+|+ ++|+++++++...++. +.-...+|+
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~----------------------g~~~~y~d~ 78 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRF----------------------SVPHAFGSY 78 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHH----------------------TCSEEESSH
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc----------------------CCCeeeCCH
Confidence 45679999999999976 45666654 66776 7899999887764432 112334566
Q ss_pred c-CC--CCcCEEEEcccCChhH
Q 009256 383 S-EF--KDVDMVIEAVIESVPL 401 (539)
Q Consensus 383 ~-~~--~~aDlVi~avpe~~~~ 401 (539)
+ .+ .+.|+|++|+|.....
T Consensus 79 ~ell~~~~iDaV~I~tP~~~H~ 100 (350)
T 4had_A 79 EEMLASDVIDAVYIPLPTSQHI 100 (350)
T ss_dssp HHHHHCSSCSEEEECSCGGGHH
T ss_pred HHHhcCCCCCEEEEeCCCchhH
Confidence 3 33 4689999999976654
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0051 Score=59.61 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=35.8
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++||.|.|+|.+|+.++..|+++|++|++++|+++..+..
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 44 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAI 44 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHH
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhH
Confidence 4689999999999999999999999999999998765543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=73.48 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=45.6
Q ss_pred ccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 490 TGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 490 ~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
.+.+.+|++++++||+..++++|| +++|||.+| .|+|||. |||+++|.++
T Consensus 624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G 679 (715)
T 1wdk_A 624 DEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIG 679 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhC
Confidence 457889999999999999999997 899999999 7999999 9999999653
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=73.56 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=45.5
Q ss_pred ccchhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 490 TGFAVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 490 ~g~v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
.+.+.+|++++++||+..++++|| +++|||.+| .|+|||. |||+++|.++
T Consensus 624 ~~~i~~r~l~~~~nea~~~l~egi~~~~~diD~~~~~G~g~p~~~GGp~~~~d~~G 679 (725)
T 2wtb_A 624 EKDIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMGFPPYRGGIMFWADSIG 679 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHCCCGGGCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCCCCCCCCCHHHHHHHhC
Confidence 356889999999999999999997 899999999 7999999 9999999653
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0066 Score=60.61 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=50.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC---Ce-EEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN---IY-VVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G---~~-V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.||+|||+|.||..++..+.+.+ ++ |.++|+++++++...+.. +.-...+++ +
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~----------------------~~~~~~~~~~~ 60 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKH----------------------DIPKAYGSYEE 60 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHH----------------------TCSCEESSHHH
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHc----------------------CCCcccCCHHH
Confidence 48999999999999999887654 34 557899998877664421 111234555 3
Q ss_pred CCC--CcCEEEEcccCChhH
Q 009256 384 EFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 384 ~~~--~aDlVi~avpe~~~~ 401 (539)
.+. ++|+|++++|.....
T Consensus 61 ll~~~~vD~V~i~tp~~~H~ 80 (334)
T 3ohs_X 61 LAKDPNVEVAYVGTQHPQHK 80 (334)
T ss_dssp HHHCTTCCEEEECCCGGGHH
T ss_pred HhcCCCCCEEEECCCcHHHH
Confidence 343 699999999977653
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0018 Score=63.01 Aligned_cols=39 Identities=15% Similarity=0.016 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~ 347 (539)
+++.|+|+|-+|.+++..|.+.|. +|++++|++++++.+
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~L 162 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI 162 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 489999999999999999999998 999999999887665
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=66.66 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++|+|+|+|.+|...+..+...|.+|+++|+++++.+.+
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 489999999999999999999999999999998876655
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0014 Score=68.45 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=36.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
+++|.|+|+|.+|..++..|++.|++|+++|+++++++.+
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~l 42 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKL 42 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHH
Confidence 4689999999999999999999999999999998876554
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.014 Score=54.49 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=76.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY-LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||+|.+|..-+..|++.|.+|++++.+... ++.+ .+.+.+. .+...-..+.+.+
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l-----------~~~~~i~---------~i~~~~~~~dL~~ 91 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEW-----------EAKGQLR---------VKRKKVGEEDLLN 91 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHH-----------HHTTSCE---------EECSCCCGGGSSS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH-----------HHcCCcE---------EEECCCCHhHhCC
Confidence 57999999999999999999999999999876431 2221 2222211 1111112256889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCC--CCCCeeeeecCCCCc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPA--HVMPLLEIVRTERTS 465 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~--~~~~~vei~~~~~t~ 465 (539)
+|+||.+. ++.++...+ ...++.+. .+ |...-+ +. ..|+.|. ..+++..-+.+.+.+
T Consensus 92 adLVIaAT-~d~~~N~~I----~~~ak~gi-~V-NvvD~p-----------~~---~~f~~Paiv~rg~l~iaIST~G~s 150 (223)
T 3dfz_A 92 VFFIVVAT-NDQAVNKFV----KQHIKNDQ-LV-NMASSF-----------SD---GNIQIPAQFSRGRLSLAISTDGAS 150 (223)
T ss_dssp CSEEEECC-CCTHHHHHH----HHHSCTTC-EE-EC----------------C---CSEECCEEEEETTEEEEEECTTSC
T ss_pred CCEEEECC-CCHHHHHHH----HHHHhCCC-EE-EEeCCc-----------cc---CeEEEeeEEEeCCEEEEEECCCCC
Confidence 99999765 455554443 33344343 33 222111 10 1122222 234566666777789
Q ss_pred HHHHHHHHHHHHH
Q 009256 466 AQVILDLMTVGKI 478 (539)
Q Consensus 466 ~e~~~~~~~l~~~ 478 (539)
|.....++.-++.
T Consensus 151 P~la~~iR~~ie~ 163 (223)
T 3dfz_A 151 PLLTKRIKEDLSS 163 (223)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9988888887765
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0017 Score=68.02 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=37.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
+||-|+|+|.+|..+|..|...||+|+++|.|+++++.+.+
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~ 44 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQD 44 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 47999999999999999999999999999999999887644
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.05 Score=57.39 Aligned_cols=166 Identities=12% Similarity=0.075 Sum_probs=103.1
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.=|+|.. -.++++-.....+.++.++.. .+-+|.|-=. +.|..|.+-++. ........++ ..+.
T Consensus 334 via~~~~~~~G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDt-pG~~~G~~~E~~----------g~~~~~A~~~-~a~~ 400 (527)
T 1vrg_A 334 IVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEHG----------GIIRHGAKLL-YAYS 400 (527)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHH
T ss_pred EEEEcCcccCCCCCHHHHHHHHHHHHHHhhc-CCCeEEEecC-CCCcCchhhHHh----------HHHHHHHHHH-HHHh
Confidence 33355543 589999999999999888654 4556666322 235555432211 1122233455 5688
Q ss_pred hCCCcEEEEEcCccccchhHhhhc----cCEEEeeCCceEeCCcccCCCCCCcchhhcccccc-----CHHHHHH-HHH-
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAIE-MML- 164 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v-----G~~~a~~-l~l- 164 (539)
+...|+|+.|-|.|.|||+.-... +|+++|.++++++ .+++-|.+..+-+.- -....++ +.-
T Consensus 401 ~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~ 473 (527)
T 1vrg_A 401 EATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIA-------VMGPEGAANIIFKREIEASSNPEETRRKLIEE 473 (527)
T ss_dssp HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHH
Confidence 999999999999999887744333 8998888887776 444444443333321 0111111 221
Q ss_pred -cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 165 -LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 165 -~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
.-+.-++..+.+.|+||.|+++.+..+......+.+...
T Consensus 474 y~~~~~~p~~~~~~g~iD~II~p~~tR~~l~~~L~~l~~~ 513 (527)
T 1vrg_A 474 YKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCETK 513 (527)
T ss_dssp HHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTC
T ss_pred HHHhhCCHHHHHHcCCCCeeeCHHHHHHHHHHHHHHHhcC
Confidence 112367788999999999999988877766666665544
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0048 Score=57.41 Aligned_cols=40 Identities=8% Similarity=0.238 Sum_probs=34.3
Q ss_pred cceEEEEcC-CCCcHHHHHHHH-HCCCeEEEEeCChH-HHHHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHI-LNNIYVVLKEVNSE-YLLKG 347 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~-~~G~~V~~~d~~~~-~~~~~ 347 (539)
|++|.|.|+ |.+|..++..|+ +.|++|++++|+++ +++.+
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~ 47 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPE 47 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHH
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhh
Confidence 455999995 999999999999 89999999999987 65443
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0029 Score=62.91 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=46.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.||+|||+|.||..++..+.+. +.++ .++|++++. .. .. .+..++++ +.+
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~------------~~-------------gv~~~~d~~~ll 56 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DT------------KT-------------PVFDVADVDKHA 56 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SS------------SS-------------CEEEGGGGGGTT
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hh------------cC-------------CCceeCCHHHHh
Confidence 4799999999999999999876 5665 588988653 11 00 12233455 334
Q ss_pred CCcCEEEEcccCChh
Q 009256 386 KDVDMVIEAVIESVP 400 (539)
Q Consensus 386 ~~aDlVi~avpe~~~ 400 (539)
.++|+||+|+|....
T Consensus 57 ~~~DvViiatp~~~h 71 (320)
T 1f06_A 57 DDVDVLFLCMGSATD 71 (320)
T ss_dssp TTCSEEEECSCTTTH
T ss_pred cCCCEEEEcCCcHHH
Confidence 789999999987654
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.006 Score=60.28 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=37.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~i 351 (539)
+++.|+|+|-+|.+++..|++.|. +|++++|+ .++++.+.+++
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~ 201 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKI 201 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHh
Confidence 479999999999999999999998 89999999 77777665544
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0034 Score=64.73 Aligned_cols=70 Identities=19% Similarity=0.194 Sum_probs=50.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHC---------CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 009256 310 KVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (539)
||||||+|.||...+..+.+. +.+|+ ++|+++++++...++. +.....
T Consensus 28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~----------------------~~~~~y 85 (412)
T 4gqa_A 28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL----------------------GAEKAY 85 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH----------------------TCSEEE
T ss_pred eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc----------------------CCCeEE
Confidence 799999999999888887764 34555 7799999888765432 222344
Q ss_pred CCc-cCC--CCcCEEEEcccCChhH
Q 009256 380 LDY-SEF--KDVDMVIEAVIESVPL 401 (539)
Q Consensus 380 ~~~-~~~--~~aDlVi~avpe~~~~ 401 (539)
+|+ +.+ .+.|+|++|+|.....
T Consensus 86 ~d~~~ll~~~~vD~V~I~tp~~~H~ 110 (412)
T 4gqa_A 86 GDWRELVNDPQVDVVDITSPNHLHY 110 (412)
T ss_dssp SSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred CCHHHHhcCCCCCEEEECCCcHHHH
Confidence 555 333 4689999999976654
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0055 Score=62.99 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=38.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN---IYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G---~~V~~~d~~~~~~~~~~~~i 351 (539)
|+||+|+|+|.+|..++..|++.| .+|+++|+++++++...+.+
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l 47 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSI 47 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHh
Confidence 468999999999999999999998 39999999999888775543
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0028 Score=66.37 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=36.2
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC-CCeEEEEeCChHHHHHH
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~ 347 (539)
.+++|.|+|+|.+|.+++..|++. |++|+++||++++++.+
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~l 63 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQAL 63 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 356899999999999999999998 78999999999887665
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.087 Score=55.55 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=88.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.-++.....+.+..+++.+.+. .+-+|.|.-. .|+.+.+-... ...+.+.+.+.. ......|+|+.
T Consensus 111 gGS~g~~~~~Ki~r~~e~A~~~-~lPvI~l~dS-----gGAR~qeg~~~-----l~g~~~~~~~~~---~~s~~iP~Isv 176 (527)
T 1vrg_A 111 GGSLGEMHAKKIVKLLDLALKM-GIPVIGINDS-----GGARIQEGVDA-----LAGYGEIFLRNT---LASGVVPQITV 176 (527)
T ss_dssp GGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEEE-----CSBCGGGTHHH-----HHHHHHHHHHHH---HHTTTSCEEEE
T ss_pred CccccHHHHHHHHHHHHHHHHc-CCCEEEEECC-----CCCCccchhHH-----HHHHHHHHHHHH---HhCCCCCEEEE
Confidence 4789999999999999988765 3456666542 34444321110 001111121221 23556999999
Q ss_pred EcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHH-----HHH--H
Q 009256 105 VEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSE-----EGW--K 176 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~-----eA~--~ 176 (539)
|.|+|.|||......||++|+.++ +.+++ .|+...+. .+|+.++.+ +.+ +
T Consensus 177 v~Gp~~GG~a~s~al~D~vi~~~~~a~i~~--------------------aGP~vi~~--~~ge~v~~e~lggae~~~~~ 234 (527)
T 1vrg_A 177 IAGPCAGGAVYSPALTDFIVMVDQTARMFI--------------------TGPNVIKA--VTGEEISQEDLGGAMVHNQK 234 (527)
T ss_dssp EEEEEBGGGGHHHHHSSEEEEETTTCBCBS--------------------SCHHHHHH--HHCCCCCHHHHHBHHHHHHT
T ss_pred EeCCCchHHHHHHHcCCeEEEecCceEEEe--------------------cCHHHHHH--HhCCCCCccccccHHHHhhc
Confidence 999999999988889999999987 66443 12222211 357777764 222 6
Q ss_pred cCCcceecCcc-hHHHHHHHHHHH
Q 009256 177 LGLIDAVVTSE-ELLKVSRLWALD 199 (539)
Q Consensus 177 ~Glv~~vv~~~-~l~~~a~~~a~~ 199 (539)
.|++|.+++++ ++.+.+.++..-
T Consensus 235 ~G~vd~vv~d~~~~~~~~~~~Ls~ 258 (527)
T 1vrg_A 235 SGNAHFLADNDEKAMSLVRTLLSY 258 (527)
T ss_dssp SCCCSEEESSHHHHHHHHHHHHTT
T ss_pred ccceEEEecCHHHHHHHHHHHHHh
Confidence 89999999864 455555555433
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.028 Score=56.71 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=49.9
Q ss_pred ceEEEEcCCCCcH-HHHHHHHHCCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGS-GIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~-~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
.||||||+|.+|. .++..+...|++|+ ++|+++++++...+.. +.....+++ +.+
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~----------------------~~~~~~~~~~~ll 84 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVY----------------------ADARRIATAEEIL 84 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHS----------------------SSCCEESCHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHc----------------------CCCcccCCHHHHh
Confidence 4899999999995 56777777888855 7899999877764321 123345566 334
Q ss_pred C--CcCEEEEcccCChh
Q 009256 386 K--DVDMVIEAVIESVP 400 (539)
Q Consensus 386 ~--~aDlVi~avpe~~~ 400 (539)
. +.|+|++++|....
T Consensus 85 ~~~~vD~V~I~tp~~~H 101 (361)
T 3u3x_A 85 EDENIGLIVSAAVSSER 101 (361)
T ss_dssp TCTTCCEEEECCCHHHH
T ss_pred cCCCCCEEEEeCChHHH
Confidence 3 58999999996554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0082 Score=56.56 Aligned_cols=38 Identities=16% Similarity=-0.042 Sum_probs=34.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++|.|+|+|.+|..++..|.+.|+ |+++|++++.++.+
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~ 47 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL 47 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH
Confidence 479999999999999999999999 99999999887654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0024 Score=59.46 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=33.7
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (539)
||.|.|+ |.+|..++..|++.|++|++++|+++..+.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD 39 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc
Confidence 6999997 999999999999999999999999877554
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.015 Score=57.96 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=31.9
Q ss_pred CcceEEEEcCCCCcHH-HHHHHHHCCCeEEEEeCCh
Q 009256 307 GVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~-iA~~l~~~G~~V~~~d~~~ 341 (539)
.+++|.|||.|.+|.+ +|..|.+.|++|+++|.++
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 3679999999999996 9999999999999999875
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0079 Score=62.63 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=52.3
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC----
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL---- 380 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---- 380 (539)
...+|+|||+|.||...+..+.+. |++|+ ++|+++++++.+.+.+. +.|. ......+
T Consensus 19 ~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~-------~~g~----------~~~~~~~~~~~ 81 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILK-------KNGK----------KPAKVFGNGND 81 (444)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHH-------HTTC----------CCCEEECSSTT
T ss_pred CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHH-------hcCC----------CCCceeccCCC
Confidence 345899999999999999888874 67764 88999998877644321 1110 0012233
Q ss_pred Cc-cCCC--CcCEEEEcccCChh
Q 009256 381 DY-SEFK--DVDMVIEAVIESVP 400 (539)
Q Consensus 381 ~~-~~~~--~aDlVi~avpe~~~ 400 (539)
++ +.++ +.|+|++|+|....
T Consensus 82 ~~~~ll~~~~vD~V~i~tp~~~h 104 (444)
T 2ixa_A 82 DYKNMLKDKNIDAVFVSSPWEWH 104 (444)
T ss_dssp THHHHTTCTTCCEEEECCCGGGH
T ss_pred CHHHHhcCCCCCEEEEcCCcHHH
Confidence 55 4444 68999999997664
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0063 Score=59.17 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=53.7
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.|. +|.++|..|.+.|.+|+++++....++. + +.+++
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~l--~---------------------------------~~~~~ 210 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDM--I---------------------------------DYLRT 210 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHHH--H---------------------------------HHHHT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCchh--h---------------------------------hhhcc
Confidence 4899999876 7999999999999999999974332220 0 22568
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
||+||.+++...-+. .+.++++++|++...
T Consensus 211 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi 240 (300)
T 4a26_A 211 ADIVIAAMGQPGYVK-------GEWIKEGAAVVDVGT 240 (300)
T ss_dssp CSEEEECSCCTTCBC-------GGGSCTTCEEEECCC
T ss_pred CCEEEECCCCCCCCc-------HHhcCCCcEEEEEec
Confidence 999999997432221 235688998886554
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.019 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=30.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCCh
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~ 341 (539)
+||.|+|+ |.+|+.++..|+..|+ +|+++|+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~ 45 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ 45 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCC
Confidence 48999997 9999999999999996 899999975
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.018 Score=59.47 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=82.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCC---C-CHHHHHHH--hhcccccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGK---L-TQDKANNA--LKMLKGVL 380 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~---~-~~~~~~~~--~~~i~~~~ 380 (539)
-+|||||+|.||..++..+.+. |.+| .++|+++++++...+.... .... . +..+.... .+....++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG------~~~~~~~~~~~~~i~~a~~~g~~~v~~ 97 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYG------DEENAREATTESAMTRAIEAGKIAVTD 97 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHS------SSTTEEECSSHHHHHHHHHTTCEEEES
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcC------CccccccccchhhhhhhhccCCceEEC
Confidence 3799999999999999887653 5554 4779999987776432100 0000 0 11111110 12344566
Q ss_pred Cc-cCCC--CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH---HHhhccCCCCcEEEeccCCCCCCCC
Q 009256 381 DY-SEFK--DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN---IVGEKTSSQDRIIGAHFFSPAHVMP 454 (539)
Q Consensus 381 ~~-~~~~--~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~---~i~~~~~~~~r~vg~h~~~p~~~~~ 454 (539)
|+ +.+. +.|+|++++|....-.+.....+ ..+.-|++........ .+....... |..
T Consensus 98 D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL----~AGKHVv~~nk~l~~~eg~eL~~~A~e~----Gvv--------- 160 (446)
T 3upl_A 98 DNDLILSNPLIDVIIDATGIPEVGAETGIAAI----RNGKHLVMMNVEADVTIGPYLKAQADKQ----GVI--------- 160 (446)
T ss_dssp CHHHHHTCTTCCEEEECSCCHHHHHHHHHHHH----HTTCEEEECCHHHHHHHHHHHHHHHHHH----TCC---------
T ss_pred CHHHHhcCCCCCEEEEcCCChHHHHHHHHHHH----HcCCcEEecCcccCHHHHHHHHHHHHHh----CCe---------
Confidence 77 4444 68999999974322122222223 3444444322222221 111111111 111
Q ss_pred eeeeecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 455 ~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.+..+ ..+..+..+.++.+.+|..++.++
T Consensus 161 -l~~~~g--dqp~~~~eLv~~a~~~G~~~v~~G 190 (446)
T 3upl_A 161 -YSLGAG--DEPSSCMELIEFVSALGYEVVSAG 190 (446)
T ss_dssp -EEECTT--SHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred -eeecCC--cchHHHHHHHHHHHhCCCeEEEec
Confidence 112222 346777888899999999999986
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.008 Score=58.21 Aligned_cols=102 Identities=17% Similarity=0.100 Sum_probs=57.3
Q ss_pred cceEEEEcC-CCCcHHHHHHHHH-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGG-GLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
..||+|+|+ |.||..++..+.. .|++|+ ++|++++.... ...+.+..- ....+..++++ +
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g------------~d~~~~~g~----~~~~v~~~~dl~~ 68 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAGA----GKTGVTVQSSLDA 68 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSSS----SCCSCCEESCSTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhh------------hhHHHHcCC----CcCCceecCCHHH
Confidence 358999998 9999999998774 578887 77887542100 000000000 00112334555 5
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 430 (539)
.+.++|+||++.+ ++........ .+..+.-+++.|++....+
T Consensus 69 ~l~~~DvVIDft~--p~~~~~~~~~---a~~~G~~vVigTtG~~~e~ 110 (273)
T 1dih_A 69 VKDDFDVFIDFTR--PEGTLNHLAF---CRQHGKGMVIGTTGFDEAG 110 (273)
T ss_dssp TTTSCSEEEECSC--HHHHHHHHHH---HHHTTCEEEECCCCCCHHH
T ss_pred HhcCCCEEEEcCC--hHHHHHHHHH---HHhCCCCEEEECCCCCHHH
Confidence 5678999997775 3332333333 3334444555555666653
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0045 Score=59.43 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=53.7
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.|. +|.++|..|...|.+|++++++...++ +.+++
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~-------------------------------------~~~~~ 193 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG-------------------------------------SMTRS 193 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHH
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH-------------------------------------Hhhcc
Confidence 4899999874 899999999999999999986532221 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++...-+. .+.+++++++++..+.
T Consensus 194 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi~ 224 (276)
T 3ngx_A 194 SKIVVVAVGRPGFLN-------REMVTPGSVVIDVGIN 224 (276)
T ss_dssp SSEEEECSSCTTCBC-------GGGCCTTCEEEECCCE
T ss_pred CCEEEECCCCCcccc-------HhhccCCcEEEEeccC
Confidence 999999997432222 2456889888875543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.005 Score=59.52 Aligned_cols=103 Identities=15% Similarity=0.080 Sum_probs=59.4
Q ss_pred CCcceEEEEc-CCCCcHHHHHHHHHC-CCeEEE-EeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 306 RGVRKVAVIG-GGLMGSGIATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 306 ~~~~kI~iIG-~G~mG~~iA~~l~~~-G~~V~~-~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+.+.||+|+| .|.||..++..+.+. +++++. +|+++..... ...+.+. .....+..++++
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G------------~d~gel~-----g~~~gv~v~~dl 67 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG------------QDAGAFL-----GKQTGVALTDDI 67 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT------------SBTTTTT-----TCCCSCBCBCCH
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc------------ccHHHHh-----CCCCCceecCCH
Confidence 3457999999 899999999988865 677775 6887432100 0000000 000124445566
Q ss_pred -cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 009256 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 430 (539)
+.+.++|+||++.+ ++.....+... +..+.-+++.|++.+...
T Consensus 68 ~~ll~~~DVVIDfT~--p~a~~~~~~~a---l~~G~~vVigTTG~s~~~ 111 (272)
T 4f3y_A 68 ERVCAEADYLIDFTL--PEGTLVHLDAA---LRHDVKLVIGTTGFSEPQ 111 (272)
T ss_dssp HHHHHHCSEEEECSC--HHHHHHHHHHH---HHHTCEEEECCCCCCHHH
T ss_pred HHHhcCCCEEEEcCC--HHHHHHHHHHH---HHcCCCEEEECCCCCHHH
Confidence 44678999999886 33333333333 333444555666776653
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0066 Score=59.92 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=36.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN---SEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~---~~~~~~~~~~ 350 (539)
+++.|+|+|-+|.+++..|++.|. +|++++|+ .++++.+.++
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~ 194 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKR 194 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHH
Confidence 479999999999999999999998 89999999 7666665544
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0066 Score=61.45 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=47.7
Q ss_pred cceEEEEcCCCCcHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+.||+|||+|.||.. .+..+.+. +++|+ ++|+++++++.. . ......+++ +
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-------------~------------~~~~~~~~~~~ 61 (364)
T 3e82_A 7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-------------L------------PDVTVIASPEA 61 (364)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-------------C------------TTSEEESCHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-------------C------------CCCcEECCHHH
Confidence 458999999999997 56666654 77775 789998764310 0 123345565 4
Q ss_pred CCC--CcCEEEEcccCChhH
Q 009256 384 EFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 384 ~~~--~aDlVi~avpe~~~~ 401 (539)
.+. +.|+|++|+|.....
T Consensus 62 ll~~~~~D~V~i~tp~~~H~ 81 (364)
T 3e82_A 62 AVQHPDVDLVVIASPNATHA 81 (364)
T ss_dssp HHTCTTCSEEEECSCGGGHH
T ss_pred HhcCCCCCEEEEeCChHHHH
Confidence 444 799999999976653
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.032 Score=55.77 Aligned_cols=107 Identities=12% Similarity=0.111 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHH-HHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKA-NNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~i~~~~~~-~ 383 (539)
.||||+|+|.+|..+++.+..+ +++|+.+ |.+++....+.+. +..-..|.. ...+. ...-+.+....+. +
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~-----dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~ 77 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVE-----KGYKLFVAIPDNERVKLFEDAGIPVEGTILD 77 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHH-----TTCCEEESSCCHHHHHHHHHTTCCCCCBGGG
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-----cCCccccccCCCceeecccCCeEEECCchHH
Confidence 5899999999999999998876 5776644 6665554444321 000001111 11111 1111233343344 4
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
.+.++|+|++|.|..... .... ..+++.|+.++++.+
T Consensus 78 ~~~~vDiV~eatg~~~s~--~~a~--~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 78 IIEDADIVVDGAPKKIGK--QNLE--NIYKPHKVKAILQGG 114 (343)
T ss_dssp TGGGCSEEEECCCTTHHH--HHHH--HTTTTTTCEEEECTT
T ss_pred hccCCCEEEECCCccccH--HHHH--HHHHHCCCEEEECCC
Confidence 457999999999855422 1111 356677776665444
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0064 Score=61.37 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=47.3
Q ss_pred cceEEEEcCCCCcHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+.||+|||+|.||.. .+..+.+. +++|+ ++|+++++... . .......+++ +
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~---~----------------------~~~~~~~~~~~~ 59 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR---D----------------------FPDAEVVHELEE 59 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH---H----------------------CTTSEEESSTHH
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh---h----------------------CCCCceECCHHH
Confidence 458999999999997 56666554 67775 77999865221 0 0123445566 4
Q ss_pred CCC--CcCEEEEcccCChhH
Q 009256 384 EFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 384 ~~~--~aDlVi~avpe~~~~ 401 (539)
.+. +.|+|++|+|.....
T Consensus 60 ll~~~~vD~V~i~tp~~~H~ 79 (358)
T 3gdo_A 60 ITNDPAIELVIVTTPSGLHY 79 (358)
T ss_dssp HHTCTTCCEEEECSCTTTHH
T ss_pred HhcCCCCCEEEEcCCcHHHH
Confidence 444 799999999977654
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.013 Score=59.79 Aligned_cols=70 Identities=14% Similarity=0.017 Sum_probs=50.7
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGG-LMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|||+| .||..++..+.+. +++|+ ++|+++++.+...+.. .+...+++ +.
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-----------------------g~~~~~~~~el 59 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY-----------------------GIPVFATLAEM 59 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH-----------------------TCCEESSHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-----------------------CCCeECCHHHH
Confidence 489999999 9999999998875 56665 7899998877654321 12334555 33
Q ss_pred CC--CcCEEEEcccCChhH
Q 009256 385 FK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 385 ~~--~aDlVi~avpe~~~~ 401 (539)
+. ++|+|++++|.....
T Consensus 60 l~~~~vD~V~i~tp~~~H~ 78 (387)
T 3moi_A 60 MQHVQMDAVYIASPHQFHC 78 (387)
T ss_dssp HHHSCCSEEEECSCGGGHH
T ss_pred HcCCCCCEEEEcCCcHHHH
Confidence 43 599999999976543
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.16 Score=54.02 Aligned_cols=171 Identities=13% Similarity=0.059 Sum_probs=97.6
Q ss_pred EEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHH
Q 009256 17 IITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLI 94 (539)
Q Consensus 17 ~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (539)
.|.-|.+. .-++++...+.+..+++.+.+. .+-+|.|.-.|+ +.+.+-..... ....+.+.+.... .+
T Consensus 109 ~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~-~lPvI~l~dSgG-----Arl~~qe~~~~--~l~~~g~if~~~~--~l 178 (588)
T 3gf3_A 109 YIVASDNKKMAGAWVPGQAENLIRCSDAAKMM-HLPLIYLLNCSG-----VEFPNQDKVYP--NRRGGGTPFFRNS--EL 178 (588)
T ss_dssp EEEEECTTSGGGCBCTTHHHHHHHHHHHHHHH-TCCEEEEECCCC-----BCGGGHHHHSS--STTSTTHHHHHHH--HH
T ss_pred EEEEECCcccCCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEcCCC-----cCccccccccc--chhhHHHHHHHHH--HH
Confidence 33444443 3788899999999999988765 355777764443 33321111000 0111223232222 35
Q ss_pred HhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccC--CCCCCcchhhccccc---cCHHHHHHHHHcCCCC
Q 009256 95 EDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTL--GVIPGFGGTQRLPRL---VGLSKAIEMMLLSKSI 169 (539)
Q Consensus 95 ~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~--Gl~p~~g~~~~l~r~---vG~~~a~~l~l~g~~~ 169 (539)
.....|+|+.|.|.|.|||...++++|++++.+++.+++.-..+ |+-|. | .. .+.- +......+-..+.+.+
T Consensus 179 s~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~-g-~~-~~~~~~~~~~~~~ge~~vs~eeL 255 (588)
T 3gf3_A 179 NQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPK-G-YI-DDEAAEQIIAAQIENSKLKVPAP 255 (588)
T ss_dssp HHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHHHTTCCCT
T ss_pred hcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCcc-c-cc-cccchhhhhhhhccccccChhhc
Confidence 67789999999999999998779999999999999888753321 11110 0 00 1110 0011111112466677
Q ss_pred CHHHHH--HcCCcceecCcch-HHHHHHHHHHHH
Q 009256 170 TSEEGW--KLGLIDAVVTSEE-LLKVSRLWALDI 200 (539)
Q Consensus 170 ~a~eA~--~~Glv~~vv~~~~-l~~~a~~~a~~l 200 (539)
.+.+.. .-|++|.++++|+ ..+.++++..-|
T Consensus 256 GGa~~h~~~sGv~d~~a~de~~al~~~r~~ls~L 289 (588)
T 3gf3_A 256 GSVPIHYDETGFFREVYQNDLGVIDGIKKYISYL 289 (588)
T ss_dssp TBHHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred cchhhhccccccceEEeCCHHHHHHHHHHHHHhC
Confidence 777766 5899999997764 445555444433
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0093 Score=61.13 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=51.2
Q ss_pred cceEEEEcCCC---CcHHHHHHHHHCC-CeEE--EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 308 VRKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 308 ~~kI~iIG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
.-||+|||+|. ||...+..+...+ ++|+ ++|+++++.+...++. | + ......++
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~----------g-~---------~~~~~~~~ 71 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQL----------G-V---------DSERCYAD 71 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHT----------T-C---------CGGGBCSS
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHh----------C-C---------CcceeeCC
Confidence 35899999999 9999988887765 6776 5799999877654321 1 0 00134455
Q ss_pred c-cCCC-------CcCEEEEcccCChhH
Q 009256 382 Y-SEFK-------DVDMVIEAVIESVPL 401 (539)
Q Consensus 382 ~-~~~~-------~aDlVi~avpe~~~~ 401 (539)
+ +.+. +.|+|++|+|.....
T Consensus 72 ~~~ll~~~~~~~~~vD~V~i~tp~~~H~ 99 (398)
T 3dty_A 72 YLSMFEQEARRADGIQAVSIATPNGTHY 99 (398)
T ss_dssp HHHHHHHHTTCTTCCSEEEEESCGGGHH
T ss_pred HHHHHhcccccCCCCCEEEECCCcHHHH
Confidence 5 3333 489999999977653
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.088 Score=55.47 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=103.6
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.=|+|.. -.++++-.....+.++.++.. .+-+|.|-=. +.|..|.+-++. -.......++ ..+.
T Consensus 330 vian~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iPlv~lvDt-pGf~~G~~~E~~----------Gi~~~~A~~l-~a~a 396 (523)
T 1on3_A 330 IVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEYG----------GIIRHGAKML-YAYS 396 (523)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHH
T ss_pred EEEecCCccCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeC-CCcCcchHHHHh----------hHHHHHHHHH-HHHh
Confidence 33355543 589999999999999888654 4556665322 346666543211 1122333555 5688
Q ss_pred hCCCcEEEEEcCccccchhHhhhc----cCEEEeeCCceEeCCcccCCCCCCcchhhcccccc-----CHHHHH-HHHH-
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV-----GLSKAI-EMML- 164 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v-----G~~~a~-~l~l- 164 (539)
+...|+|+.|-|.++|||+.-... +|+++|.++++++ .+++-|.+..+-+.- -....+ ++.-
T Consensus 397 ~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~~~ 469 (523)
T 1on3_A 397 EATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEE 469 (523)
T ss_dssp HCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHH
Confidence 999999999999999888754444 7888887777765 444444444333321 001111 1211
Q ss_pred -cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 165 -LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 165 -~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
.-+.-++..+.+.|+||.|+++.+..+......+.+...
T Consensus 470 y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~~~ 509 (523)
T 1on3_A 470 YQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATK 509 (523)
T ss_dssp HHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGGC
T ss_pred HHHhhCCHHHHHhcCCCCEeeCHHHHHHHHHHHHHHHhcC
Confidence 111256788999999999999988877666666655443
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0084 Score=60.06 Aligned_cols=71 Identities=11% Similarity=-0.060 Sum_probs=51.2
Q ss_pred cceEEEEcCC-CCcHHHHHHHHHC--CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-
Q 009256 308 VRKVAVIGGG-LMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY- 382 (539)
Q Consensus 308 ~~kI~iIG~G-~mG~~iA~~l~~~--G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 382 (539)
..+|+|||+| .||...+..+.+. +++| .++|+++++++.+.++. +.....+|+
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~----------------------~~~~~~~~~~ 75 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV----------------------GNPAVFDSYE 75 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH----------------------SSCEEESCHH
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh----------------------CCCcccCCHH
Confidence 3489999999 8999999988876 4666 58899999877664321 112344555
Q ss_pred cCC--CCcCEEEEcccCChh
Q 009256 383 SEF--KDVDMVIEAVIESVP 400 (539)
Q Consensus 383 ~~~--~~aDlVi~avpe~~~ 400 (539)
+.+ .+.|+|++|+|....
T Consensus 76 ~ll~~~~vD~V~i~tp~~~H 95 (340)
T 1zh8_A 76 ELLESGLVDAVDLTLPVELN 95 (340)
T ss_dssp HHHHSSCCSEEEECCCGGGH
T ss_pred HHhcCCCCCEEEEeCCchHH
Confidence 334 368999999996654
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.011 Score=57.42 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=54.0
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.|. +|.++|..|...|.+|++++++...+. +.++.
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 208 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK 208 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCcccHH-------------------------------------HHhcc
Confidence 4899999995 699999999999999999975532211 44689
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++..--+. .+.++++++|++....
T Consensus 209 ADIVI~Avg~p~~I~-------~~~vk~GavVIDVgi~ 239 (301)
T 1a4i_A 209 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN 239 (301)
T ss_dssp CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred CCEEEECCCCcccCC-------HHHcCCCcEEEEccCC
Confidence 999999997432222 2346789988876543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0039 Score=58.15 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=33.6
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
|++|.|.|+ |.+|..++..|++.|++|++++|+++..
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~ 41 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI 41 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccc
Confidence 578999995 9999999999999999999999998754
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.034 Score=58.68 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=32.2
Q ss_pred CCCcceEEEEcCCCCcHH-HHHHHHHCCCeEEEEeCChH
Q 009256 305 PRGVRKVAVIGGGLMGSG-IATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 305 ~~~~~kI~iIG~G~mG~~-iA~~l~~~G~~V~~~d~~~~ 342 (539)
+..+++|.|||.|..|.+ +|..|.+.|++|+++|.++.
T Consensus 19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~ 57 (494)
T 4hv4_A 19 MRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN 57 (494)
T ss_dssp ---CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred hccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC
Confidence 345789999999999996 99999999999999998754
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.016 Score=59.77 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=49.9
Q ss_pred ceEEEEcCCC---CcHHHHHHHHHCC-CeEE--EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGL---MGSGIATAHILNN-IYVV--LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~---mG~~iA~~l~~~G-~~V~--~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.||+|||+|. ||...+..+...+ ++|+ ++|+++++++...++. |. ......+++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~----------g~----------~~~~~~~~~ 97 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGREL----------GL----------DPSRVYSDF 97 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHH----------TC----------CGGGBCSCH
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHc----------CC----------CcccccCCH
Confidence 4899999999 9999888887765 6765 6799999877764431 10 001334555
Q ss_pred -cCCC-------CcCEEEEcccCChhH
Q 009256 383 -SEFK-------DVDMVIEAVIESVPL 401 (539)
Q Consensus 383 -~~~~-------~aDlVi~avpe~~~~ 401 (539)
+.+. +.|+|++++|.....
T Consensus 98 ~~ll~~~~~~~~~vD~V~I~tp~~~H~ 124 (417)
T 3v5n_A 98 KEMAIREAKLKNGIEAVAIVTPNHVHY 124 (417)
T ss_dssp HHHHHHHHHCTTCCSEEEECSCTTSHH
T ss_pred HHHHhcccccCCCCcEEEECCCcHHHH
Confidence 3333 489999999977653
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.024 Score=54.05 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 379999999999999999999997 899998764
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.011 Score=61.36 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=51.3
Q ss_pred cceEEEEcC----CCCcHHHHHHHHHC--CCeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 308 VRKVAVIGG----GLMGSGIATAHILN--NIYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 308 ~~kI~iIG~----G~mG~~iA~~l~~~--G~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
..+|+|||+ |.||...+..+.+. +++| .++|+++++.+.+.+.. +. ......+
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~----------g~----------~~~~~~~ 79 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRL----------KL----------SNATAFP 79 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT----------TC----------TTCEEES
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc----------CC----------CcceeeC
Confidence 358999999 99999999999886 6776 58899998877653321 10 0112345
Q ss_pred Cc-cCCC--CcCEEEEcccCChh
Q 009256 381 DY-SEFK--DVDMVIEAVIESVP 400 (539)
Q Consensus 381 ~~-~~~~--~aDlVi~avpe~~~ 400 (539)
++ +.+. +.|+|++|+|....
T Consensus 80 ~~~~ll~~~~vD~V~i~tp~~~H 102 (438)
T 3btv_A 80 TLESFASSSTIDMIVIAIQVASH 102 (438)
T ss_dssp SHHHHHHCSSCSEEEECSCHHHH
T ss_pred CHHHHhcCCCCCEEEEeCCcHHH
Confidence 55 3343 69999999996554
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0094 Score=58.75 Aligned_cols=91 Identities=15% Similarity=0.004 Sum_probs=58.2
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-----c--C
Q 009256 309 RKVAVIGGGLM-GSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-----V--L 380 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~--~ 380 (539)
+++.|||.|.| |..+|..|...|.+|+++||+..+.....+ ..+. ..... + .
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~----------~la~----------~~~~~t~~~~t~~~ 237 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGE----------SLKL----------NKHHVEDLGEYSED 237 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCC----------CSSC----------CCCEEEEEEECCHH
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHH----------HHhh----------hcccccccccccHh
Confidence 58999999976 999999999999999999998432111000 0000 00001 1 2
Q ss_pred Cc-cCCCCcCEEEEcccCChh-HHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 381 DY-SEFKDVDMVIEAVIESVP-LKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe~~~-~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
++ +.+++||+||.+++..-- +.. +.+++++++++..+..
T Consensus 238 ~L~e~l~~ADIVIsAtg~p~~vI~~-------e~vk~GavVIDVgi~r 278 (320)
T 1edz_A 238 LLKKCSLDSDVVITGVPSENYKFPT-------EYIKEGAVCINFACTK 278 (320)
T ss_dssp HHHHHHHHCSEEEECCCCTTCCBCT-------TTSCTTEEEEECSSSC
T ss_pred HHHHHhccCCEEEECCCCCcceeCH-------HHcCCCeEEEEcCCCc
Confidence 34 567899999999974321 221 2357888888776654
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.011 Score=62.20 Aligned_cols=75 Identities=20% Similarity=0.135 Sum_probs=52.0
Q ss_pred CCcceEEEEcC----CCCcHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 306 RGVRKVAVIGG----GLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 306 ~~~~kI~iIG~----G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
+...+|+|||+ |.||...+..|.+. +++|+ ++|+++++++.+.+.. |. .....
T Consensus 37 m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~----------g~----------~~~~~ 96 (479)
T 2nvw_A 37 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL----------QL----------KHATG 96 (479)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT----------TC----------TTCEE
T ss_pred CCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc----------CC----------Cccee
Confidence 33458999999 99999999999885 67765 8899998877654321 10 01123
Q ss_pred cCCc-cCC--CCcCEEEEcccCChh
Q 009256 379 VLDY-SEF--KDVDMVIEAVIESVP 400 (539)
Q Consensus 379 ~~~~-~~~--~~aDlVi~avpe~~~ 400 (539)
.+++ +.+ .+.|+|++|+|....
T Consensus 97 ~~d~~ell~~~~vD~V~I~tp~~~H 121 (479)
T 2nvw_A 97 FDSLESFAQYKDIDMIVVSVKVPEH 121 (479)
T ss_dssp ESCHHHHHHCTTCSEEEECSCHHHH
T ss_pred eCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 4555 334 379999999996554
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.011 Score=56.90 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=53.7
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.|. +|.++|..|...|.+|++++++...++ +.++.
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~L~-------------------------------------~~~~~ 203 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLS-------------------------------------LYTRQ 203 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhhc
Confidence 4899999876 699999999999999999986532211 34678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++...-+. .+.++++++|++....
T Consensus 204 ADIVI~Avg~p~~I~-------~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 204 ADLIIVAAGCVNLLR-------SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp CSEEEECSSCTTCBC-------GGGSCTTEEEEECCCE
T ss_pred CCEEEECCCCCCcCC-------HHHcCCCeEEEEeccC
Confidence 999999997422221 2456889888865543
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.14 Score=54.24 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=100.1
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.=|+|.. -.++++-.+...+.++.++.. .+-+|.|-=. +.|..|.+-++. -.......++ ..+.
T Consensus 351 vian~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~~----------Gi~~~ga~~l-~a~~ 417 (548)
T 2bzr_A 351 IVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKLL-YAYG 417 (548)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHT----------THHHHHHHHH-HHHH
T ss_pred EEEECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHHh----------hHHHHHHHHH-HHHh
Confidence 33355543 589999999999999988754 4555555321 346666543221 1122233455 5688
Q ss_pred hCCCcEEEEEcCccccchhHhhh----ccCEEEeeCCceEeCCcccCCCCCCcchhhccccc-cCH--------HHHH-H
Q 009256 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VGL--------SKAI-E 161 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-vG~--------~~a~-~ 161 (539)
+...|+|+.|-|.|+|||..-.. .+|+++|.++++++ ++++-|....+-+. +-. ...+ +
T Consensus 418 ~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~-------Vmgpegaa~Il~r~~~~~~~~~g~~~~~~~~~ 490 (548)
T 2bzr_A 418 EATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIA-------VMGASGAVGFVYRQQLAEAAANGEDIDKLRLR 490 (548)
T ss_dssp HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTCCC----------CHHHHHH
T ss_pred CCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEE-------ecCHHHHHHHHhhhHHhhhhcccccHHHHHHH
Confidence 99999999999999998875443 38999888888776 33333433333322 110 0111 1
Q ss_pred HHH--cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHH
Q 009256 162 MML--LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (539)
Q Consensus 162 l~l--~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 201 (539)
+.- .-..-++..+.+.|+||.|+++.+.........+.+.
T Consensus 491 ~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~l~~~L~~l~ 532 (548)
T 2bzr_A 491 LQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGYIGTALRLLE 532 (548)
T ss_dssp HHHHHHHHHSBSHHHHHTTSSSEECCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCHHHHHhcCCCceeeCHHHHHHHHHHHHHHHh
Confidence 211 0112355779999999999999877765555554443
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.02 Score=55.73 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=37.5
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
+++.|+| +|-+|.+++..|++.|.+|++++|++++.+...+.+
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~ 163 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 163 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHH
Confidence 4788999 899999999999999999999999998877665443
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0066 Score=57.20 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCcceEEEEc-CCCCcHHHHHHHHHCC-CeEEEEeCChHHHH
Q 009256 305 PRGVRKVAVIG-GGLMGSGIATAHILNN-IYVVLKEVNSEYLL 345 (539)
Q Consensus 305 ~~~~~kI~iIG-~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~ 345 (539)
++.|++|.|.| .|.+|..++..|++.| ++|++++|+++.++
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~ 62 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH 62 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc
Confidence 34577899999 5999999999999999 89999999987543
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.013 Score=56.43 Aligned_cols=72 Identities=14% Similarity=0.085 Sum_probs=52.8
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.|. +|.++|..|...|.+|+++++....++ +.+++
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 204 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLK-------------------------------------SHTTK 204 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------Hhccc
Confidence 4899999876 699999999999999999976422111 34688
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
||+||.+++...-+. .+.+++++++++...
T Consensus 205 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi 234 (285)
T 3l07_A 205 ADILIVAVGKPNFIT-------ADMVKEGAVVIDVGI 234 (285)
T ss_dssp CSEEEECCCCTTCBC-------GGGSCTTCEEEECCC
T ss_pred CCEEEECCCCCCCCC-------HHHcCCCcEEEEecc
Confidence 999999997432221 245688888876554
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0077 Score=58.14 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=52.9
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.|. .|.++|..|...|.+|++++++...+. +.+++
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~-------------------------------------~~~~~ 202 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN 202 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH-------------------------------------HHhcc
Confidence 4899999996 599999999999999999986543222 33578
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
||+||.+++..--+.. +.++++++|++...
T Consensus 203 ADIVI~Avg~p~lI~~-------~~vk~GavVIDVgi 232 (288)
T 1b0a_A 203 ADLLIVAVGKPGFIPG-------DWIKEGAIVIDVGI 232 (288)
T ss_dssp CSEEEECSCCTTCBCT-------TTSCTTCEEEECCC
T ss_pred CCEEEECCCCcCcCCH-------HHcCCCcEEEEccC
Confidence 9999999973321221 24578888876554
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.012 Score=54.44 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=32.1
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
||.|.| .|.+|..++..|++.|++|++++|+++..
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~ 37 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQV 37 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGS
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccch
Confidence 799998 69999999999999999999999998653
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.015 Score=58.86 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=48.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN--NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~--G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|||+| +|..-+..+.+. +++++ ++|+++++.+...++. .+...+|+ +.
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~-----------------------gv~~~~~~~~l 63 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF-----------------------GIPLYTSPEQI 63 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT-----------------------TCCEESSGGGC
T ss_pred CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh-----------------------CCCEECCHHHH
Confidence 489999999 798877777654 57766 7799999877764421 23445666 55
Q ss_pred CCCcCEEEEcccCCh
Q 009256 385 FKDVDMVIEAVIESV 399 (539)
Q Consensus 385 ~~~aDlVi~avpe~~ 399 (539)
+.+.|+|++++|...
T Consensus 64 ~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 64 TGMPDIACIVVRSTV 78 (372)
T ss_dssp CSCCSEEEECCC--C
T ss_pred hcCCCEEEEECCCcc
Confidence 688999999998654
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.014 Score=56.92 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=31.4
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
+++|.|+|+ |.+|..++..|++.|++|++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 457999996 9999999999999999999999986
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.046 Score=56.90 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=32.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
-++|.|||.|..|.+.|..|.+.|++|+++|.++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~ 43 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPF 43 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcc
Confidence 46899999999999999999999999999999753
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.082 Score=56.37 Aligned_cols=158 Identities=11% Similarity=0.116 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-.++++-.....+.++.++.. .+-+|.|-=. +.|..|.+-++ .........++ .++.+.+.|+|+.|
T Consensus 385 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~gA~~~-~a~a~a~vP~itvI 451 (587)
T 1pix_A 385 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT 451 (587)
T ss_dssp TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred CCcCHHHHHHHHHHHHHhhcC-CCCeEEEecC-CCCCCcHHHHH----------HHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 479999999999999877654 5666666432 34666654221 11223344556 67999999999999
Q ss_pred cCccccchhHhhhc-----c--CEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH-----------H---HHHHH
Q 009256 106 EGLALGGGLELAMG-----C--HARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK-----------A---IEMML 164 (539)
Q Consensus 106 ~G~a~GgG~~lal~-----~--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~-----------a---~~l~l 164 (539)
-|.++|||. ++++ + |+++|.++++++ ++++-|.+..+-+.- ... + .++.-
T Consensus 452 ~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~-------Vm~pegaa~Il~r~~-~~~~~~~g~~~~~~~~~~~~~~~ 522 (587)
T 1pix_A 452 LRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIA-------VMNGETAATAMYSRR-LAKDRKAGKDLQPTIDKMNNLIQ 522 (587)
T ss_dssp CSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEE-------SSCHHHHHHHHHHHH-HHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cCCCccHHH-HHhcCcccCcccceeeeccCCeEe-------cCCHHHHHHHHHhhh-hhhhhhcCCChHHHHHHHHHHHH
Confidence 999998884 5555 4 998888888776 333344433332211 110 0 11100
Q ss_pred -cCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCc
Q 009256 165 -LSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRK 205 (539)
Q Consensus 165 -~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~ 205 (539)
--+..++..|.+.|+||.|+++.+.........+.+...|.
T Consensus 523 ~y~~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~~~~~~ 564 (587)
T 1pix_A 523 AFYTKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNPE 564 (587)
T ss_dssp HHHHTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSCS
T ss_pred HHHHhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHHhcCCc
Confidence 01247889999999999999999888777777777766653
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.019 Score=57.67 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=47.7
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|||+|.||.. .+..+.+. +++|+ ++|+++++.+. .. ......+++ +.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~------------~~~~~~~~~~~l 62 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------DW------------PAIPVVSDPQML 62 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------TC------------SSCCEESCHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------hC------------CCCceECCHHHH
Confidence 48999999999997 67777665 67776 88999876441 00 123445566 33
Q ss_pred CC--CcCEEEEcccCChhH
Q 009256 385 FK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 385 ~~--~aDlVi~avpe~~~~ 401 (539)
+. +.|+|++|+|.....
T Consensus 63 l~~~~vD~V~i~tp~~~H~ 81 (352)
T 3kux_A 63 FNDPSIDLIVIPTPNDTHF 81 (352)
T ss_dssp HHCSSCCEEEECSCTTTHH
T ss_pred hcCCCCCEEEEeCChHHHH
Confidence 43 599999999977754
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.02 Score=56.39 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=31.5
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
+++|.|+|+ |.+|+.++..|++.|++|++++|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 467999996 9999999999999999999999986
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.18 Score=53.07 Aligned_cols=171 Identities=15% Similarity=0.198 Sum_probs=105.3
Q ss_pred cCcEEEEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-.-|.=|+|.. -.++++-.....+.++.++.. .+-+|.|.=.+ .|..|.+-++ .........+
T Consensus 330 ~G~~Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E~----------~gi~~~~Ak~ 397 (530)
T 3iav_A 330 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP-GFLPGVDQEH----------DGIIRRGAKL 397 (530)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHHH----------TTHHHHHHHH
T ss_pred CCEEEEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC-CCCccHHHHH----------hhHHHHHHHH
Confidence 34333344466653 589999999999999888764 45666664222 3666664321 1123334455
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhc-----cCEEEeeCCceEeCCcccCCCCCCcchhhccccc-cC------HH
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMG-----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-VG------LS 157 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~-----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-vG------~~ 157 (539)
+ .++.+...|+|+.|-|.++|||. ++++ .|+++|.++++++. +++-|....+-+. +- ..
T Consensus 398 l-~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~ 468 (530)
T 3iav_A 398 I-FAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEA 468 (530)
T ss_dssp H-HHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHH
T ss_pred H-HHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHH
Confidence 6 67899999999999999998776 5554 69998888887763 3333333322221 11 01
Q ss_pred HHHHHH--HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 158 KAIEMM--LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 158 ~a~~l~--l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
.-.++. +.-+.-++..|.+.|+||.|+++.+.........+.+...
T Consensus 469 ~~~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~l~~~l~~~~~k 516 (530)
T 3iav_A 469 TRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTK 516 (530)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHHHHHHHHHHHHhcC
Confidence 111111 1112246778889999999999998876665555544443
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0035 Score=62.98 Aligned_cols=70 Identities=13% Similarity=0.044 Sum_probs=45.9
Q ss_pred ceEEEEcCCCCcHHHHHH-H-HH-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATA-H-IL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~-l-~~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
.||+|||+|.||..+... + .. .+++|+ ++|+++++.+... + .......+++ +
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~-----------~------------~~~~~~~~~~~~ 59 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAP-----------I------------YSHIHFTSDLDE 59 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSG-----------G------------GTTCEEESCTHH
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHH-----------h------------cCCCceECCHHH
Confidence 489999999999975443 4 32 367877 8899987542210 0 0223445666 4
Q ss_pred CCC--CcCEEEEcccCChhH
Q 009256 384 EFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 384 ~~~--~aDlVi~avpe~~~~ 401 (539)
.+. +.|+|++|+|.+...
T Consensus 60 ll~~~~~D~V~i~tp~~~h~ 79 (345)
T 3f4l_A 60 VLNDPDVKLVVVCTHADSHF 79 (345)
T ss_dssp HHTCTTEEEEEECSCGGGHH
T ss_pred HhcCCCCCEEEEcCChHHHH
Confidence 444 489999999976653
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.017 Score=55.58 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=52.8
Q ss_pred ceEEEEcCCCC-cHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 309 RKVAVIGGGLM-GSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~m-G~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
+++.|||.|.+ |.++|..|... |.+|++++++...+. +.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~L~-------------------------------------~~~ 201 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLP-------------------------------------ALT 201 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSCHH-------------------------------------HHH
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhHHH-------------------------------------HHH
Confidence 48999999976 99999999999 889999976542211 346
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
++||+||.+++..--++. +.+++++++++...
T Consensus 202 ~~ADIVI~Avg~p~~I~~-------~~vk~GavVIDVgi 233 (281)
T 2c2x_A 202 RQADIVVAAVGVAHLLTA-------DMVRPGAAVIDVGV 233 (281)
T ss_dssp TTCSEEEECSCCTTCBCG-------GGSCTTCEEEECCE
T ss_pred hhCCEEEECCCCCcccCH-------HHcCCCcEEEEccC
Confidence 789999999973322222 34678888876543
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0057 Score=61.85 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=47.9
Q ss_pred CCcceEEEEcCCCCcHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 306 RGVRKVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+++.||+|||+|.||.. .+..+.+. +++|+ ++|++++++.. + .+.....+++
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-------------~------------~~~~~~~~~~ 57 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-------------R------------YPQASIVRSF 57 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-------------T------------CTTSEEESCS
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-------------h------------CCCCceECCH
Confidence 34458999999999997 66667665 67775 77999765211 0 0123445566
Q ss_pred -cCCC--CcCEEEEcccCChhH
Q 009256 383 -SEFK--DVDMVIEAVIESVPL 401 (539)
Q Consensus 383 -~~~~--~aDlVi~avpe~~~~ 401 (539)
+.+. +.|+|++|+|.....
T Consensus 58 ~~ll~~~~vD~V~i~tp~~~H~ 79 (362)
T 3fhl_A 58 KELTEDPEIDLIVVNTPDNTHY 79 (362)
T ss_dssp HHHHTCTTCCEEEECSCGGGHH
T ss_pred HHHhcCCCCCEEEEeCChHHHH
Confidence 4444 499999999976653
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.23 Score=47.22 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=75.8
Q ss_pred cccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH---hhccCC-CCcEEEeccCCC
Q 009256 375 MLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV---GEKTSS-QDRIIGAHFFSP 449 (539)
Q Consensus 375 ~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i---~~~~~~-~~r~vg~h~~~p 449 (539)
.++.++|. ++++++|++|.-.|--- ....+.+++.++++.++||+ ++=++++..+ .+.+.+ .-.+..+||-.-
T Consensus 128 GVkVtsDD~EAvk~AEi~IlftPfG~-~t~~Iakkii~~lpEgAII~-nTCTipp~~ly~~le~l~R~DvgIsS~HPaaV 205 (358)
T 2b0j_A 128 GLKVTSDDREAVEGADIVITWLPKGN-KQPDIIKKFADAIPEGAIVT-HACTIPTTKFAKIFKDLGREDLNITSYHPGCV 205 (358)
T ss_dssp TCEEESCHHHHHTTCSEEEECCTTCT-THHHHHHHHGGGSCTTCEEE-ECSSSCHHHHHHHHHHTTCTTSEEEECBCSSC
T ss_pred CcEeecchHHHhcCCCEEEEecCCCC-CcHHHHHHHHhhCcCCCEEe-cccCCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 45666665 89999999999998533 24477889999999999886 4445554432 233332 245667777554
Q ss_pred CCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 450 AHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 450 ~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
|... .-....-...++|+++++.+|.++.|+.++.+
T Consensus 206 Pgt~-Gq~~~g~~yAtEEqIeklveLaksa~k~ay~v 241 (358)
T 2b0j_A 206 PEMK-GQVYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (358)
T ss_dssp TTTC-CCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCC-CccccccccCCHHHHHHHHHHHHHhCCCeEec
Confidence 4332 22233444569999999999999999999988
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.078 Score=52.30 Aligned_cols=40 Identities=18% Similarity=0.115 Sum_probs=35.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|.|+ |.+|+.++..|++.|++|++++++++..+...
T Consensus 12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 52 (342)
T 1y1p_A 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHH
Confidence 57999987 99999999999999999999999987765543
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.017 Score=55.65 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=52.6
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+++.|||.|. .|.++|..|...|.+|+++.+....++ +.++.
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~L~-------------------------------------~~~~~ 204 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLA-------------------------------------DHVSR 204 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSCHH-------------------------------------HHHHT
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcCHH-------------------------------------HHhcc
Confidence 4899999865 799999999999999999976432111 33678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
||+||.+++...-+. .+.++++++|++..+.
T Consensus 205 ADIVI~Avg~p~~I~-------~~~vk~GavVIDvgi~ 235 (286)
T 4a5o_A 205 ADLVVVAAGKPGLVK-------GEWIKEGAIVIDVGIN 235 (286)
T ss_dssp CSEEEECCCCTTCBC-------GGGSCTTCEEEECCSC
T ss_pred CCEEEECCCCCCCCC-------HHHcCCCeEEEEeccc
Confidence 999999997432221 2456888888765543
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0054 Score=57.09 Aligned_cols=78 Identities=22% Similarity=0.222 Sum_probs=45.4
Q ss_pred ceEEEEcCCCCcHHHHHH--HHHCCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATA--HILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~--l~~~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.+|+|||+|.+|..++.. +...|++++ ++|.|+++...... + -.+...+++ +.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~------------g-----------v~V~~~~dl~el 142 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVG------------G-----------VPVYNLDDLEQH 142 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEET------------T-----------EEEEEGGGHHHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhc------------C-----------CeeechhhHHHH
Confidence 479999999999999994 445577665 77999875432100 0 011123344 33
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEK 411 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~ 411 (539)
+++.|+|++|+|... .+++...+.+
T Consensus 143 i~~~D~ViIAvPs~~--~~ei~~~l~~ 167 (215)
T 2vt3_A 143 VKDESVAILTVPAVA--AQSITDRLVA 167 (215)
T ss_dssp CSSCCEEEECSCHHH--HHHHHHHHHH
T ss_pred HHhCCEEEEecCchh--HHHHHHHHHH
Confidence 444499999998433 3455555543
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.018 Score=58.43 Aligned_cols=70 Identities=23% Similarity=0.238 Sum_probs=45.8
Q ss_pred eEEEEcCCCCcHHHHHHHHH--------CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 310 KVAVIGGGLMGSGIATAHIL--------NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~--------~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
||||||+|.||..-+..+.. .+.+|+ ++|+++++++...++. +.-...+
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~----------------------g~~~~y~ 84 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF----------------------GFEKATA 84 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH----------------------TCSEEES
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh----------------------CCCeecC
Confidence 79999999999876655432 245554 7799999887764432 2223455
Q ss_pred Cc-cCC--CCcCEEEEcccCChhH
Q 009256 381 DY-SEF--KDVDMVIEAVIESVPL 401 (539)
Q Consensus 381 ~~-~~~--~~aDlVi~avpe~~~~ 401 (539)
|+ +.+ .+.|+|++|+|.....
T Consensus 85 d~~ell~~~~iDaV~IatP~~~H~ 108 (393)
T 4fb5_A 85 DWRALIADPEVDVVSVTTPNQFHA 108 (393)
T ss_dssp CHHHHHHCTTCCEEEECSCGGGHH
T ss_pred CHHHHhcCCCCcEEEECCChHHHH
Confidence 65 333 4689999999977654
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.18 Score=53.03 Aligned_cols=164 Identities=14% Similarity=0.124 Sum_probs=100.0
Q ss_pred EEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.=|+|.. -.++++-.....+.++.+++. .+-+|.|-=. +.|..|.+-++ .-.......++ .++.
T Consensus 342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDt-pGf~~G~~~E~----------~Gi~~~gAk~l-~a~a 408 (531)
T 3n6r_B 342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDV-PGFLPGTSQEY----------GGVIKHGAKLL-YAYG 408 (531)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CSBCCSHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCC-CCCCCCHHHHH----------hhHHHHHHHHH-HHHH
Confidence 44456653 589999999999999887754 4556666322 23555553221 11223344556 6789
Q ss_pred hCCCcEEEEEcCccccchhHhhhc----cCEEEeeCCceEeCCcccCCCCCCcchhhcccc-ccC---HHHHHHHHHcCC
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMG----CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVG---LSKAIEMMLLSK 167 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~----~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~vG---~~~a~~l~l~g~ 167 (539)
+.+.|+|+.|-|.++|||..-... +|+++|.++++++. +++-|.+..+-+ .+- ....+.--+.-+
T Consensus 409 ~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~~~~~~~~~~~~y~~~ 481 (531)
T 3n6r_B 409 EATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLGDPEKIAQHTADYEER 481 (531)
T ss_dssp HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTTSTTHHHHHHHHHHHH
T ss_pred hCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 999999999999999988743332 89998888887763 333333332222 111 011111111112
Q ss_pred CCCHHHHHHcCCcceecCcchHHHHHHHHHHHHH
Q 009256 168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (539)
Q Consensus 168 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 201 (539)
.-++..|.+.|+||.|+++.+.........+.+.
T Consensus 482 ~~~p~~aa~~~~vD~vIdP~~TR~~l~~~l~~~~ 515 (531)
T 3n6r_B 482 FANPFVASERGFVDEVIQPRSTRKRVARAFASLR 515 (531)
T ss_dssp HSSSHHHHHHTSSSEECCGGGHHHHHHHHHHTTT
T ss_pred hcCHHHHHhcCccCcccCHHHHHHHHHHHHHHHh
Confidence 2456678889999999999887765554444433
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=95.10 E-value=0.057 Score=58.60 Aligned_cols=82 Identities=11% Similarity=0.073 Sum_probs=56.0
Q ss_pred CCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC--CHHH-
Q 009256 97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TSEE- 173 (539)
Q Consensus 97 ~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~--~a~e- 173 (539)
...|+|+.|.|.|.|||..+...||++|+.+++.+.+. |+...+. .+|+.+ +.++
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~iflt--------------------GP~vIk~--~tGeeV~~s~eeL 302 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GAPAINK--MLGREVYTSNLQL 302 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESS--------------------CHHHHHH--HHTSCCCSCTHHH
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEe--------------------CHHHHHH--HhCCccccCchhc
Confidence 46799999999999999999999999999998644322 2221111 266665 4443
Q ss_pred -----HHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 174 -----GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 174 -----A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
-..-|++|.++++|+ .+.+.++++.+.
T Consensus 303 GGA~vh~~sGvad~va~dd~---eal~~ir~lLsy 334 (758)
T 3k8x_A 303 GGTQIMYNNGVSHLTAVDDL---AGVEKIVEWMSY 334 (758)
T ss_dssp HSHHHHTTTTSSSEEESSHH---HHHHHHHHHHTT
T ss_pred chhhHHHhcCCeeEEecCHH---HHHHHHHHHHhh
Confidence 236899999997663 333444444443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.015 Score=57.15 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=31.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
++|.|+|+ |.+|..++..|++.|++|++++|+++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~ 46 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS 46 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCC
Confidence 47999995 99999999999999999999999875
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.027 Score=56.17 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEE-EeCChHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVL-KEVNSEYLLK 346 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~-~d~~~~~~~~ 346 (539)
.||+|+|+|.||..+++.+.++ +++|+. .|++++....
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~ 41 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEAR 41 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHH
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHH
Confidence 4899999999999999999874 567654 5777654443
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.011 Score=55.43 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=30.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
.|+|||+|.-|.+.|..|+++|++|+++|+++
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 49999999999999999999999999999764
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.029 Score=55.88 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=58.8
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHC-CCeEEEEeCCh---HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC--
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKEVNS---EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-- 380 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~d~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 380 (539)
|.||+|+|+ |.+|..+...|.++ .+++..+..+. ..-+...+. ... . .+. ..+.+..
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~----~p~-~-~~~----------~~~~v~~~~ 67 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDL----HPQ-L-KGI----------VELPLQPMS 67 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHH----CGG-G-TTT----------CCCBEEEES
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHh----Ccc-c-cCc----------cceeEeccC
Confidence 579999995 99999999999884 56887765433 211111110 000 0 010 0122221
Q ss_pred CccCC-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 381 DYSEF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 381 ~~~~~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
+.+.+ .++|+||+|+|... -.+...++ +..++.++++++....
T Consensus 68 ~~~~~~~~~Dvvf~a~p~~~--s~~~~~~~---~~~g~~vIDlSa~fR~ 111 (337)
T 3dr3_A 68 DISEFSPGVDVVFLATAHEV--SHDLAPQF---LEAGCVVFDLSGAFRV 111 (337)
T ss_dssp SGGGTCTTCSEEEECSCHHH--HHHHHHHH---HHTTCEEEECSSTTSS
T ss_pred CHHHHhcCCCEEEECCChHH--HHHHHHHH---HHCCCEEEEcCCcccc
Confidence 33445 89999999998433 33443333 3467888888887644
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.035 Score=55.39 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=50.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHH-HHHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKA-NNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~ 384 (539)
.||||+|+|.||..++..+.+. +.+|+ +.|++++.+....++.. .-..+.+. ... .-..+.+....++ +.
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g-----~~~~~~~~-~~v~~~~~~~~~v~~d~~~l 76 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELG-----IPVYAASE-EFIPRFEKEGFEVAGTLNDL 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTT-----CCEEESSG-GGHHHHHHHTCCCSCBHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcC-----cccccccc-ccceeccCCceEEcCcHHHh
Confidence 4899999999999999998875 45654 56888766655432100 00000000 000 0000123444455 44
Q ss_pred CCCcCEEEEcccCChh
Q 009256 385 FKDVDMVIEAVIESVP 400 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~ 400 (539)
+.++|+|++|.|....
T Consensus 77 ~~~vDvV~~aTp~~~h 92 (334)
T 2czc_A 77 LEKVDIIVDATPGGIG 92 (334)
T ss_dssp HTTCSEEEECCSTTHH
T ss_pred ccCCCEEEECCCcccc
Confidence 5699999999997654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.023 Score=55.45 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
+++|.|+|+ |.+|+.++..|++.|++|++++|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 468999996 9999999999999999999999984
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.018 Score=58.37 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=48.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCC--------CeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 310 KVAVIGGGLMGSGIATAHILNN--------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G--------~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
+|||||+|.||..-+..+.+.. .+| .++|+++++++...++. +.-...+
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~----------------------g~~~~~~ 65 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKL----------------------GWSTTET 65 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHH----------------------TCSEEES
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHc----------------------CCCcccC
Confidence 6999999999998877776532 244 47899999887764432 2223455
Q ss_pred Cc-cCC--CCcCEEEEcccCChhH
Q 009256 381 DY-SEF--KDVDMVIEAVIESVPL 401 (539)
Q Consensus 381 ~~-~~~--~~aDlVi~avpe~~~~ 401 (539)
|+ +.+ .+.|+|++|+|.....
T Consensus 66 d~~~ll~~~~iDaV~I~tP~~~H~ 89 (390)
T 4h3v_A 66 DWRTLLERDDVQLVDVCTPGDSHA 89 (390)
T ss_dssp CHHHHTTCTTCSEEEECSCGGGHH
T ss_pred CHHHHhcCCCCCEEEEeCChHHHH
Confidence 66 334 4689999999977654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.045 Score=54.55 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=31.2
Q ss_pred CcceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 307 GVRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 307 ~~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
..++|.|+|+ |.+|+.++..|++.|++|++++|++
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3468999997 9999999999999999999999976
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.017 Score=58.15 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 340 (539)
.||.|+|+|.+|..+|+.+...|. +|+++|++
T Consensus 193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK 225 (388)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence 489999999999999999999998 89999998
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.067 Score=52.08 Aligned_cols=33 Identities=27% Similarity=0.264 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|-.|+.++..|+..|+ +++++|.+.
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 489999999999999999999997 899999876
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.014 Score=56.86 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|||.|.|+ |.+|+.++..|.++||+|++..|+++
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~ 35 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPG 35 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 47999997 99999999999999999999999864
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.013 Score=59.51 Aligned_cols=34 Identities=32% Similarity=0.425 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
+||.|||+|.-|..+|..|+++|++|+++|++++
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 3799999999999999999999999999997643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.19 Score=48.84 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=61.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccC--
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSE-- 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-- 384 (539)
++|..||+|..|.+... +++ .|.+|+.+|++++.++.+++..... |. .++++. .|...
T Consensus 124 ~rVLDIGcG~G~~ta~~-lA~~~ga~V~gIDis~~~l~~Ar~~~~~~-------gl----------~~v~~v~gDa~~l~ 185 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGIL-LSHVYGMRVNVVEIEPDIAELSRKVIEGL-------GV----------DGVNVITGDETVID 185 (298)
T ss_dssp CEEEEECCCSSCHHHHH-HHHTTCCEEEEEESSHHHHHHHHHHHHHH-------TC----------CSEEEEESCGGGGG
T ss_pred CEEEEECCCccHHHHHH-HHHccCCEEEEEECCHHHHHHHHHHHHhc-------CC----------CCeEEEECchhhCC
Confidence 48999999997654332 343 5889999999999999887654321 11 112211 11111
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
-...|+|+.+.. ..-+..+++++...++|+..++..
T Consensus 186 d~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~ 221 (298)
T 3fpf_A 186 GLEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYR 221 (298)
T ss_dssp GCCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 246899997654 344668899999999998766543
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.039 Score=46.30 Aligned_cols=81 Identities=9% Similarity=-0.017 Sum_probs=56.3
Q ss_pred cceEEEEcC----CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 308 VRKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 308 ~~kI~iIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
.++|+|||+ +..|..+..+|.+.||+|+.+++..+.+ .......+++
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~ 54 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----------------------------LGKTIINERP 54 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----------------------------TTEECBCSCC
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----------------------------CCeeccCChH
Confidence 468999998 5678999999999999999988764321 1234455665
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
++.+.|+++.++| .+....++++..+.= ...++.
T Consensus 55 dlp~vDlavi~~p--~~~v~~~v~e~~~~g-~k~v~~ 88 (122)
T 3ff4_A 55 VIEGVDTVTLYIN--PQNQLSEYNYILSLK-PKRVIF 88 (122)
T ss_dssp CCTTCCEEEECSC--HHHHGGGHHHHHHHC-CSEEEE
T ss_pred HCCCCCEEEEEeC--HHHHHHHHHHHHhcC-CCEEEE
Confidence 5544999999998 555556777765542 234543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.033 Score=54.48 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=31.1
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
+++|.|+|+ |.+|+.++..|++.|++|++++|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE 38 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 468999995 9999999999999999999999983
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.02 Score=58.20 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=48.0
Q ss_pred cceEEEEc-CCCCcHH-HH----HHHHHCC-CeE----------EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHH
Q 009256 308 VRKVAVIG-GGLMGSG-IA----TAHILNN-IYV----------VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN 370 (539)
Q Consensus 308 ~~kI~iIG-~G~mG~~-iA----~~l~~~G-~~V----------~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 370 (539)
..||+||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+...+..
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~------------------- 66 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRF------------------- 66 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHT-------------------
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHh-------------------
Confidence 34899999 9999998 66 6666543 333 49999999887764321
Q ss_pred HHhhcccccCCc-cCC--CCcCEEEEcccCChh
Q 009256 371 NALKMLKGVLDY-SEF--KDVDMVIEAVIESVP 400 (539)
Q Consensus 371 ~~~~~i~~~~~~-~~~--~~aDlVi~avpe~~~ 400 (539)
+.-...+|+ +.+ .+.|+|++++|....
T Consensus 67 ---~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h 96 (383)
T 3oqb_A 67 ---NIARWTTDLDAALADKNDTMFFDAATTQAR 96 (383)
T ss_dssp ---TCCCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred ---CCCcccCCHHHHhcCCCCCEEEECCCchHH
Confidence 111234555 333 358999999997665
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.025 Score=56.42 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=31.5
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
.++|.|.|+ |.+|+.++..|++.|++|++++|++.
T Consensus 25 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 25 PKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 458999995 99999999999999999999999654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.03 Score=52.66 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=36.2
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
.++|.|.|+ |-+|..+|..|++.|++|++.+|+++.++...+.
T Consensus 3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 46 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELL 46 (235)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 356778875 8899999999999999999999999887766543
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.06 Score=53.08 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--CCCeE-EEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHIL--NNIYV-VLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~--~G~~V-~~~d~~~~~ 343 (539)
.||+|||+|.+|..++..+.+ .+.++ .++|+++++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~ 42 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS 42 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhh
Confidence 489999999999999999865 35554 467999776
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.038 Score=58.62 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=32.5
Q ss_pred cceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 308 VRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+++|.|.| .|.+|+.++..|++.|++|++++|++..
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~ 183 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK 183 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 45899999 5999999999999999999999998754
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.022 Score=56.65 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=43.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC---------CeE-EEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN---------IYV-VLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G---------~~V-~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
.+|+|||+|.||..++..+.+.. .+| .++|+++++.+ + +. ....
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~----------------~-~~---------~~~~ 57 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPR----------------A-IP---------QELL 57 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCC----------------S-SC---------GGGE
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhh----------------c-cC---------cccc
Confidence 47999999999999999988763 455 46688754311 1 11 1123
Q ss_pred cCCc-cCCCCcCEEEEcccCCh
Q 009256 379 VLDY-SEFKDVDMVIEAVIESV 399 (539)
Q Consensus 379 ~~~~-~~~~~aDlVi~avpe~~ 399 (539)
++|+ +.+ +.|+|++|+|...
T Consensus 58 ~~d~~~ll-~iDvVve~t~~~~ 78 (332)
T 2ejw_A 58 RAEPFDLL-EADLVVEAMGGVE 78 (332)
T ss_dssp ESSCCCCT-TCSEEEECCCCSH
T ss_pred cCCHHHHh-CCCEEEECCCCcH
Confidence 5566 445 9999999998653
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.023 Score=56.39 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=28.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHC---------CCeEE-EEeCChHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILN---------NIYVV-LKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~---------G~~V~-~~d~~~~~ 343 (539)
|.||+|||+|.||..++..+.+. +++|+ ++|++++.
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~ 47 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSI 47 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEE
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHh
Confidence 45899999999999999999875 45555 55777544
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.068 Score=53.50 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=32.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
++|+|+|.|++|...|..+...|.+|+++|+++++
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~ 210 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER 210 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence 58999999999999999999999999999999764
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.17 Score=48.14 Aligned_cols=42 Identities=31% Similarity=0.453 Sum_probs=35.6
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| | .+-+|.++|..|++.|.+|+++|++++.++...+++
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i 51 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL 51 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 56666 5 577899999999999999999999999888776654
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.033 Score=54.25 Aligned_cols=91 Identities=16% Similarity=-0.034 Sum_probs=56.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
.||+|+|+ |.||...+..+.+.|++ .++..||.+... + ...+....++ +...
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~--~-----------------------~~G~~vy~sl~el~~ 61 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGT--T-----------------------HLGLPVFNTVREAVA 61 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC--E-----------------------ETTEEEESSHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccc--e-----------------------eCCeeccCCHHHHhh
Confidence 48999998 99999999999988998 455666532100 0 0123334455 3344
Q ss_pred --CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 387 --DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 387 --~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
++|++++++|... ...++.+..+. .-..++ ..+.+.+..
T Consensus 62 ~~~~D~viI~tP~~~--~~~~~~ea~~~-Gi~~iV-i~t~G~~~~ 102 (288)
T 2nu8_A 62 ATGATASVIYVPAPF--CKDSILEAIDA-GIKLII-TITEGIPTL 102 (288)
T ss_dssp HHCCCEEEECCCGGG--HHHHHHHHHHT-TCSEEE-ECCCCCCHH
T ss_pred cCCCCEEEEecCHHH--HHHHHHHHHHC-CCCEEE-EECCCCCHH
Confidence 7999999999543 44555554442 223333 345566654
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.12 Score=56.50 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=53.9
Q ss_pred CCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC--CH---
Q 009256 97 CKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TS--- 171 (539)
Q Consensus 97 ~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~--~a--- 171 (539)
...|+|+.|.|.|.|||..++..||++|+.+++.+.+. |+. +.+. .+|+.+ +.
T Consensus 258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~lt--------------------Gp~-vi~~-~~Ge~vy~s~e~L 315 (793)
T 2x24_A 258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILT--------------------GAT-ALNK-VLGRDVYTSNNQL 315 (793)
T ss_dssp HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESS--------------------CHH-HHHH-HHSSCCCSCHHHH
T ss_pred CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEec--------------------CHH-HHHH-hcCCcccCChhhh
Confidence 46999999999999999999999999999998766543 111 1111 345554 32
Q ss_pred ---HHHHHcCCcceecCcc-hHHHHHHHH
Q 009256 172 ---EEGWKLGLIDAVVTSE-ELLKVSRLW 196 (539)
Q Consensus 172 ---~eA~~~Glv~~vv~~~-~l~~~a~~~ 196 (539)
+-....|++|.++++| +..+.+.+|
T Consensus 316 GGa~v~~~~Gv~d~vv~dd~ea~~~ir~~ 344 (793)
T 2x24_A 316 GGVQIMHHNGVSHVTVPDDFEGVCTILEW 344 (793)
T ss_dssp HSHHHHTTTTSCSEEESSHHHHHHHHHHH
T ss_pred ccHHHHHhcCceEEEeCCHHHHHHHHHHH
Confidence 2255789999999875 333333333
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.065 Score=53.82 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
+|.|||+|..|+.++..|+..|. +++++|.+.
T Consensus 120 ~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 120 KVVILGCGGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 79999999999999999999997 899999874
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.082 Score=50.33 Aligned_cols=43 Identities=23% Similarity=0.171 Sum_probs=36.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|.|+ |-+|..++..|++.|++|++.+++++..+...+.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 51 (260)
T 2z1n_A 8 KLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRI 51 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45777775 88999999999999999999999998877665544
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.041 Score=54.82 Aligned_cols=36 Identities=17% Similarity=0.012 Sum_probs=33.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
++|.|+|.|..|..++..|.+.|+ |+++|+|++.++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~ 151 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK 151 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh
Confidence 479999999999999999999999 999999999877
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.075 Score=49.66 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=37.2
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++++.|.|+ |-+|..++..|++.|++|++.+++++.++...+.+
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 46 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHEL 46 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 356777775 78999999999999999999999999887776554
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.072 Score=53.16 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=47.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCC--CCHHHHHHHhh--cccccCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGK--LTQDKANNALK--MLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~--~i~~~~~~ 382 (539)
.||||+|+|.||..+++.+.++ +.+|+ +.|++++.......+ .+. .........++ .+....+.
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~----------~g~~~~~~~~~~~~~~~~~v~v~~~~ 71 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHR----------RGIRIYVPQQSIKKFEESGIPVAGTV 71 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHH----------TTCCEECCGGGHHHHHTTTCCCCCCH
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHh----------cCcceecCcCHHHHhcccccccccCH
Confidence 4899999999999999998875 45665 557776554433221 110 11101111111 12233344
Q ss_pred cC-CCCcCEEEEcccCCh
Q 009256 383 SE-FKDVDMVIEAVIESV 399 (539)
Q Consensus 383 ~~-~~~aDlVi~avpe~~ 399 (539)
+. +.++|+||+|.|...
T Consensus 72 e~l~~~vDvV~~aTp~~~ 89 (340)
T 1b7g_O 72 EDLIKTSDIVVDTTPNGV 89 (340)
T ss_dssp HHHHHHCSEEEECCSTTH
T ss_pred hHhhcCCCEEEECCCCch
Confidence 22 457999999998654
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.047 Score=51.61 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=34.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|.|+ |.+|..++..|++.|++|++.+|+++.++...+
T Consensus 12 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (254)
T 2wsb_A 12 ACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ 53 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46777775 899999999999999999999999887766544
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.034 Score=52.03 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=33.6
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|.| .|.+|..++..|++.|++|++.+++++.++...
T Consensus 6 k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 46 (234)
T 2ehd_A 6 GAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALA 46 (234)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 3577776 589999999999999999999999988766543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.23 Score=47.02 Aligned_cols=39 Identities=13% Similarity=0.186 Sum_probs=32.1
Q ss_pred ceEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
+|+.+| | .+-+|.++|..|++.|.+|++.|++++.++..
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~ 42 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADF 42 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 455555 5 57799999999999999999999998876654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.046 Score=50.30 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=34.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (539)
+||.|+|+ |.+|+.++..|+++|++|++++|+++..+.
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~ 39 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ 39 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh
Confidence 37999995 999999999999999999999999877554
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.026 Score=55.67 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=30.4
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEE-EEeCChHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVV-LKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~ 343 (539)
|.||+|||+ |.||...+..+.+.+.+|+ ++|+++++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~ 40 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV 40 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 468999999 7899999999998887654 77998765
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=93.99 E-value=0.04 Score=59.35 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.+|.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 18 s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~ 51 (640)
T 1y8q_B 18 GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDT 51 (640)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCB
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 379999999999999999999998 999999764
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.064 Score=52.01 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=57.5
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|+| .|.||..++..+.+. +++++ ++|+++..... ..+ ......+. ..+..++|+ +.
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G--~d~----gel~G~~~----------~gv~v~~dl~~l 85 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVD--KDA----SILIGSDF----------LGVRITDDPESA 85 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTT--SBG----GGGTTCSC----------CSCBCBSCHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--cch----HHhhccCc----------CCceeeCCHHHH
Confidence 4899999 899999999998754 67766 45876431000 000 00000000 134456676 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+.++|+||+..+ ++..... +...+..+.-+++.|++.+..
T Consensus 86 l~~aDVvIDFT~--p~a~~~~---~~~~l~~Gv~vViGTTG~~~e 125 (288)
T 3ijp_A 86 FSNTEGILDFSQ--PQASVLY---ANYAAQKSLIHIIGTTGFSKT 125 (288)
T ss_dssp TTSCSEEEECSC--HHHHHHH---HHHHHHHTCEEEECCCCCCHH
T ss_pred hcCCCEEEEcCC--HHHHHHH---HHHHHHcCCCEEEECCCCCHH
Confidence 789999999875 3322232 333333455555667777654
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.028 Score=55.65 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEE-EEeCChHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVV-LKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~ 343 (539)
|.||||||+ |.||...+..+.+.|.+++ ++|+++++
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~ 40 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSV 40 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCC
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHH
Confidence 468999999 7999999999998887654 77998764
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.92 E-value=0.063 Score=53.44 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEE-eC--ChHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EV--NSEYLLK 346 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~-d~--~~~~~~~ 346 (539)
.||+|+|+|.+|..+++.+.++ +++|+.+ |+ +++....
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ 45 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTY 45 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHH
T ss_pred eEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHH
Confidence 4899999999999999998876 5676655 42 4444433
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.11 Score=49.28 Aligned_cols=43 Identities=26% Similarity=0.196 Sum_probs=36.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
+++.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 13 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 56 (252)
T 3f1l_A 13 RIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI 56 (252)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 35666775 78999999999999999999999999887776554
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.079 Score=50.50 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=35.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|.|+ |-+|..++..|++.|++|++.+|+++.++...+.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 51 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL 51 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 45777775 88999999999999999999999998777665443
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=93.88 E-value=0.038 Score=53.29 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=32.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC--CCeEEEEeCChHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN--NIYVVLKEVNSEYLL 345 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~ 345 (539)
++|.|.|+ |.+|+.++..|++. |++|++++|+++..+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~ 40 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS 40 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh
Confidence 36889986 99999999999998 999999999976544
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.099 Score=49.52 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=26.2
Q ss_pred eEEEEcC-CCCcHHHHHHHHHC-CCeEE-EEeCC
Q 009256 310 KVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVN 340 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~ 340 (539)
||+|+|+ |.||..++..+.+. |++|+ ++|++
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~ 35 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG 35 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC
Confidence 7999996 99999999998865 89887 55654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=93.83 E-value=0.082 Score=52.19 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=37.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~ 352 (539)
++|.|.|+ |-+|..++..|++.|++|++.+++++.++...+.+.
T Consensus 9 k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~ 53 (319)
T 3ioy_A 9 RTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLE 53 (319)
T ss_dssp CEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 46777875 889999999999999999999999998887766543
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.088 Score=49.84 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=48.6
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++.|.| .|-+|..++..|++.|++|++.+++++.++...+.+... ...+..+.-+.+........+. +.....
T Consensus 2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~v~~~~~~~~-----~~~g~i 75 (248)
T 3asu_A 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDN-LYIAQLDVRNRAAIEEMLASLP-----AEWCNI 75 (248)
T ss_dssp EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTT-EEEEECCTTCHHHHHHHHHTSC-----TTTCCC
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCc-eEEEEcCCCCHHHHHHHHHHHH-----HhCCCC
Confidence 455666 589999999999999999999999998776654432100 0011122223333333322221 334578
Q ss_pred CEEEEcc
Q 009256 389 DMVIEAV 395 (539)
Q Consensus 389 DlVi~av 395 (539)
|++|.+.
T Consensus 76 D~lvnnA 82 (248)
T 3asu_A 76 DILVNNA 82 (248)
T ss_dssp CEEEECC
T ss_pred CEEEECC
Confidence 8888765
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=93.77 E-value=0.043 Score=55.03 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
..|.|||+|.+|.+.|..|+++|++|+++|++
T Consensus 7 ~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 7 KRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 47999999999999999999999999999974
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.34 Score=45.99 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=35.8
Q ss_pred ceEEEEcC-C-CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-G-LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G-~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|.|+ | -+|..++..|++.|++|++.+++++.++...+.
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 66 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQ 66 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH
Confidence 46778898 8 499999999999999999999999887766443
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.027 Score=59.27 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=31.6
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|++|.|||+|.-|.+-|..|+++|++|++++.+..
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~ 35 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK 35 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence 67999999999999999999999999999998753
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.099 Score=50.57 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=35.2
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++.|.| .|-+|..+|..|++.|++|++.+++++.++...+.+
T Consensus 35 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~ 77 (281)
T 4dry_A 35 IALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI 77 (281)
T ss_dssp EEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 455556 588999999999999999999999998887766554
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.03 Score=56.35 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=30.2
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|.|||+|.-|.+.|..|+++|++|+++|+.++
T Consensus 7 ViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~ 38 (397)
T 3oz2_A 7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE 38 (397)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 99999999999999999999999999998653
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.67 E-value=0.12 Score=49.43 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=35.4
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|.| .|-+|..++..|++.|++|++.+|+++.++...+.+
T Consensus 22 k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 65 (267)
T 1vl8_A 22 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKL 65 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4566777 488999999999999999999999988776654443
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.035 Score=53.64 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=33.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+++|.|.|+|.+|+.++..|++.|++|++++|+++.
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 468999999999999999999999999999998654
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.082 Score=50.88 Aligned_cols=42 Identities=17% Similarity=0.081 Sum_probs=34.8
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|.| .|-+|..+|..|++.|++|++.+|+++.++...+.
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~ 64 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGE 64 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 4566666 58999999999999999999999999877765443
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.073 Score=53.26 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=54.9
Q ss_pred cceEEEEc-CCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 308 VRKVAVIG-GGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 308 ~~kI~iIG-~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
+.||+|+| .|.+|..+.+.|.++.. +++.+......-.+. .... +.+.. ...+.+. +.+.+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~--------~~~~--~~~~g------~~~~~~~-~~~~~ 66 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPV--------HFVH--PNLRG------RTNLKFV-PPEKL 66 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBG--------GGTC--GGGTT------TCCCBCB-CGGGC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchh--------HHhC--chhcC------ccccccc-chhHh
Confidence 45899999 69999999999987654 777665432211110 0000 00000 0011111 12235
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
.++|+||+|+|.... .+... .++..++.+++.++...
T Consensus 67 ~~vDvV~~a~g~~~s--~~~a~---~~~~aG~~VId~Sa~~r 103 (345)
T 2ozp_A 67 EPADILVLALPHGVF--AREFD---RYSALAPVLVDLSADFR 103 (345)
T ss_dssp CCCSEEEECCCTTHH--HHTHH---HHHTTCSEEEECSSTTS
T ss_pred cCCCEEEEcCCcHHH--HHHHH---HHHHCCCEEEEcCcccc
Confidence 789999999986553 23333 23356777788777543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.4 Score=46.09 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=35.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
+++.|.|+ |-+|..+|..|++.|++|++.+++++.++...+.
T Consensus 25 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 67 (279)
T 3sju_A 25 QTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG 67 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45666674 8899999999999999999999999887766543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.094 Score=49.24 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=35.3
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|.| .|.+|..++..|++.|++|++.+++++..+...+.+
T Consensus 8 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 51 (248)
T 2pnf_A 8 KVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEI 51 (248)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence 3566776 589999999999999999999999988777654443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.27 Score=47.87 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=31.2
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
++|.|.| .|.+|+.++..|++.|++|++++|++..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN 38 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc
Confidence 5899999 5999999999999999999999998544
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.074 Score=51.20 Aligned_cols=42 Identities=21% Similarity=0.190 Sum_probs=35.4
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|.| .|.+|..++..|++.|++|++.+++++.++...+.
T Consensus 33 k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 75 (279)
T 1xg5_A 33 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAE 75 (279)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH
Confidence 4677777 48999999999999999999999999877765443
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.058 Score=51.53 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=34.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|.|+ |-+|..++..|++.|++|++.+|+++..+...+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA 49 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45777774 889999999999999999999999887665543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.1 Score=50.70 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=32.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCC-CeEEEEeCChHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~ 344 (539)
++|.|.|+ |.+|..++..|++.| ++|++.+|+++..
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~ 43 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK 43 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSH
T ss_pred CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCH
Confidence 57999997 999999999999988 9999999997653
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.50 E-value=0.072 Score=50.31 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=33.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
+++.|.|+ |-+|..++..|++.|++|++.+|+++.++..
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 45 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA 45 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 46777775 8899999999999999999999998876654
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.081 Score=50.13 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=35.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|.|+ |.+|..++..|+++|++|++.+++++..+...+.
T Consensus 14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 56 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVED 56 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 46778875 8999999999999999999999998876655443
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.052 Score=51.90 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=31.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
++|.|.|+ |-+|..+|..|++.|++|++.+++++...
T Consensus 28 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~ 65 (260)
T 3gem_A 28 APILITGASQRVGLHCALRLLEHGHRVIISYRTEHASV 65 (260)
T ss_dssp CCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence 35666674 88999999999999999999999987643
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=93.40 E-value=0.19 Score=50.26 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=25.9
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHC-CCeEEEEe
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILN-NIYVVLKE 338 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~d 338 (539)
.+.||+|+|+|.+|..+.+.+.++ .++|+.++
T Consensus 16 ~~ikVgI~G~G~iGr~llR~l~~~p~veivain 48 (354)
T 3cps_A 16 FQGTLGINGFGRIGRLVLRACMERNDITVVAIN 48 (354)
T ss_dssp --CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred cceEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence 345899999999999999999876 57777664
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.40 E-value=0.089 Score=50.29 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=35.7
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
++|.|.| .|-+|..++..|++.|++|++.+++++.++...+.+
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 57 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV 57 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 4566777 588999999999999999999999998877665443
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=93.39 E-value=0.9 Score=47.93 Aligned_cols=159 Identities=15% Similarity=0.091 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-.++++-.+...+.++.++.. .+-+|.|.-.+ .|..|.+-.+ .-.......++ .++.+.+.|+|+.|
T Consensus 366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E~----------~Gi~~~gAk~~-~a~~~a~vP~itvi 432 (555)
T 3u9r_B 366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNIT-GFMVGQKYEA----------GGIAKHGAKLV-TAVACARVPKFTVL 432 (555)
T ss_dssp SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC-CBCCSHHHHH----------TTHHHHHHHHH-HHHHHCCSCEEEEE
T ss_pred CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCc-CCCCCHHHHH----------HHHHHHHHHHH-HHHHhCCCCEEEEE
Confidence 578899998888888888654 46667764332 3666654221 11222344555 67899999999999
Q ss_pred cCccccchhHhh----hccCEEEeeCCceEeCCcccCCCCCCcchhhccc---cc----cC----H--HHHH-H-HHH-c
Q 009256 106 EGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP---RL----VG----L--SKAI-E-MML-L 165 (539)
Q Consensus 106 ~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~---r~----vG----~--~~a~-~-l~l-~ 165 (539)
-|.++|||..-. +.+|+++|.++++++. +.+-|....|- +. .| . ..+. + +.- -
T Consensus 433 ~g~~~Ggg~~am~~~~~~~d~~~a~p~A~i~V-------mgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~y 505 (555)
T 3u9r_B 433 IGGSFGAGNYGMCGRAYDPRFLWMWPNARIGV-------MGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPILEQY 505 (555)
T ss_dssp EEEEETTHHHHTTCGGGCCSEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHH
T ss_pred eCCccchhhHhhcCccCCCCeEEEcCCcEEEc-------CCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHH
Confidence 999988864332 2479999988888773 33333333222 10 00 0 0000 0 000 0
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
-+..++-.|-+.|+||.|+++.+.........+.+...+
T Consensus 506 ~~~~~p~~aa~r~~vD~vIdP~~TR~~l~~~l~~~~~~~ 544 (555)
T 3u9r_B 506 EHQGHPYYSSARLWDDGVIDPAQTREVLALALSAALNAP 544 (555)
T ss_dssp HHHHSHHHHHHTTSSSCBCCGGGHHHHHHHHHHHHTTSC
T ss_pred HHhCCHHHHhhccccCcccChHHHHHHHHHHHHHHhcCC
Confidence 112366667788999999999888776665555554443
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.23 Score=47.33 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=36.2
Q ss_pred eEEEE--cCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| |.+-+|.++|..|++.|.+|++.|++++.+++..+.+
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l 53 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL 53 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 67777 4678999999999999999999999999888775544
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.28 Score=47.22 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=34.2
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
||++| | .+-+|.++|..|++.|.+|++.|++++.++...+
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~ 71 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIA 71 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 67766 5 4679999999999999999999999998877644
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.078 Score=50.27 Aligned_cols=43 Identities=23% Similarity=0.174 Sum_probs=36.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
+++.|.|+ |-+|..+|..|++.|++|++.+|+++.++...+.+
T Consensus 8 k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 51 (250)
T 3nyw_A 8 GLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI 51 (250)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 35666675 88999999999999999999999999888776654
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.11 Score=49.36 Aligned_cols=77 Identities=16% Similarity=0.043 Sum_probs=49.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|+++|.|.||..++.. . +++++ +|+ ++ . +.+ .+..++|. +.+.
T Consensus 13 ~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k---~--------------gel----------gv~a~~d~d~lla 59 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RI---S--------------KDI----------PGVVRLDEFQVPS 59 (253)
T ss_dssp CEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SS---C--------------CCC----------SSSEECSSCCCCT
T ss_pred ceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cc---c--------------ccc----------CceeeCCHHHHhh
Confidence 489999999999999998 4 88774 556 21 1 000 23445666 4457
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
++|+|++|.+ .+ .+-+.+.+.+..+.=+++.+
T Consensus 60 ~pD~VVe~A~--~~---av~e~~~~iL~aG~dvv~~S 91 (253)
T 1j5p_A 60 DVSTVVECAS--PE---AVKEYSLQILKNPVNYIIIS 91 (253)
T ss_dssp TCCEEEECSC--HH---HHHHHHHHHTTSSSEEEECC
T ss_pred CCCEEEECCC--HH---HHHHHHHHHHHCCCCEEEcC
Confidence 9999999985 32 22223566677766554444
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.034 Score=55.28 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHH---CCCeEEEEeCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVN 340 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~---~G~~V~~~d~~ 340 (539)
|.+|.|||+|..|.+.|..|++ +|++|+++|++
T Consensus 1 m~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~ 36 (342)
T 3qj4_A 1 MAQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA 36 (342)
T ss_dssp CEEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSS
T ss_pred CCcEEEECCcHHHHHHHHHHHhhccCCceEEEEECC
Confidence 3579999999999999999999 99999999976
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.44 Score=44.85 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=35.8
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++|.|.|+ |-+|..+|..|++.|++|++++++++.++...+.
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 52 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQ 52 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 46777775 8899999999999999999999999887776554
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.14 Score=50.87 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-CCeEEEE-eC--ChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-NIYVVLK-EV--NSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G~~V~~~-d~--~~~~~~~~ 347 (539)
.||||+|+|.+|..+++.+.++ +.+|+.+ |+ +++.+..+
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l 46 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYM 46 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHH
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence 4899999999999999998764 5787655 53 55554443
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=93.25 E-value=0.13 Score=51.79 Aligned_cols=98 Identities=14% Similarity=0.156 Sum_probs=56.2
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.||+|+| .|.+|..+.+.|.++.. +|+.+....+.-.+..+ .... . .+... ..+.... .+.+.
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~----~~~~-~-~~~v~--------~dl~~~~-~~~~~ 81 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMES----VFPH-L-RAQKL--------PTLVSVK-DADFS 81 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHH----HCGG-G-TTSCC--------CCCBCGG-GCCGG
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHH----hCch-h-cCccc--------ccceecc-hhHhc
Confidence 4899999 79999999999988754 77766543221111100 0000 0 01000 0111111 23456
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
++|+||+|+|..... + ....+ ..++.++++++...
T Consensus 82 ~vDvVf~atp~~~s~--~---~a~~~-~aG~~VId~sa~~R 116 (359)
T 1xyg_A 82 TVDAVFCCLPHGTTQ--E---IIKEL-PTALKIVDLSADFR 116 (359)
T ss_dssp GCSEEEECCCTTTHH--H---HHHTS-CTTCEEEECSSTTT
T ss_pred CCCEEEEcCCchhHH--H---HHHHH-hCCCEEEECCcccc
Confidence 899999999866642 2 22344 66788888887654
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.052 Score=48.36 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
.+|.|||+|..|..+|..|++.|.+|+++++++
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~ 34 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR 34 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 479999999999999999999999999999875
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.11 Score=52.18 Aligned_cols=101 Identities=19% Similarity=0.152 Sum_probs=54.9
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcC---CCCHHHHHHHhhccccc-CCc
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRG---KLTQDKANNALKMLKGV-LDY 382 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~i~~~-~~~ 382 (539)
.||+|+| .|.+|..+.+.|.++. ++|+.+.+++....+... ...... .+.... ..+.+. .+.
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~-------~~~~~~~~~~~~~~~-----~~~~~~~~~~ 76 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYK-------DACYWFQDRDIPENI-----KDMVVIPTDP 76 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHH-------HHSCCCCSSCCCHHH-----HTCBCEESCT
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHH-------HhcccccccccccCc-----eeeEEEeCCH
Confidence 5899999 7999999999998764 588777543221111000 000000 000000 112221 133
Q ss_pred cCC-C-CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC
Q 009256 383 SEF-K-DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI 426 (539)
Q Consensus 383 ~~~-~-~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~ 426 (539)
+.+ + ++|+||+|+|... ..+....+ +..++.|+++++..
T Consensus 77 ~~~~~~~~DvV~~atp~~~--~~~~a~~~---~~aG~~VId~s~~~ 117 (354)
T 1ys4_A 77 KHEEFEDVDIVFSALPSDL--AKKFEPEF---AKEGKLIFSNASAY 117 (354)
T ss_dssp TSGGGTTCCEEEECCCHHH--HHHHHHHH---HHTTCEEEECCSTT
T ss_pred HHHhcCCCCEEEECCCchH--HHHHHHHH---HHCCCEEEECCchh
Confidence 344 6 8999999998433 33333333 33567788877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 539 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 1e-40 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 2e-36 | |
| d1wdka3 | 186 | c.2.1.6 (A:311-496) Fatty oxidation complex alpha | 6e-33 | |
| d1f0ya2 | 192 | c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA | 4e-29 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 1e-19 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 1e-16 | |
| d1hzda_ | 266 | c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T | 3e-15 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 2e-14 | |
| d1nzya_ | 269 | c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps | 8e-13 | |
| d2f6qa1 | 245 | c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C | 3e-12 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 1e-11 | |
| d1ef8a_ | 261 | c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Esc | 5e-10 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 4e-09 | |
| d1wz8a1 | 263 | c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT | 2e-08 | |
| d1sg4a1 | 249 | c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-d | 1e-07 | |
| d2fw2a1 | 258 | c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum | 2e-06 | |
| d1szoa_ | 249 | c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus | 7e-06 | |
| d2a7ka1 | 230 | c.14.1.3 (A:1-230) Carbapenem biosynthes protein C | 3e-05 | |
| d1wdka1 | 124 | a.100.1.3 (A:497-620) Fatty oxidation complex alph | 1e-04 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 145 bits (366), Expect = 1e-40
Identities = 69/173 (39%), Positives = 86/173 (49%), Gaps = 5/173 (2%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
N V +I L P NAL ++ L E V AIVLTG F+ G DI
Sbjct: 14 NSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM 73
Query: 71 QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQ 130
Q S + I KKP++AAV G ALGGG ELAM C A K Q
Sbjct: 74 QNRTFQDCYSGK----FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQ 129
Query: 131 LGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
G PE+ LG IPG GGTQRL R VG S A+EM+L I++++ + GL+ +
Sbjct: 130 FGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 182
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 135 bits (340), Expect = 2e-36
Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 6/301 (1%)
Query: 6 VTMEVGNDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
+T+ G+ + VN + L+ + + VK ++++ F
Sbjct: 8 ITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIV 67
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHA 122
G DI F + D L+ + + ED P VAA+ G+ALGGGLE+ +
Sbjct: 68 GADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADF 127
Query: 123 RIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDA 182
R+ A ++GLPE+ LG+ PGFGGT RLPRL+G+ A+E + K +E+ K+ +DA
Sbjct: 128 RVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDA 187
Query: 183 VVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA---KKTAP 239
VVT+++L + + + + L+ +++ + + P
Sbjct: 188 VVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGFVAGQAGP 247
Query: 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNVT 299
N P + I++ G + EA F +L S L+ +F + K V
Sbjct: 248 NYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKVY 307
Query: 300 D 300
D
Sbjct: 308 D 308
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Score = 121 bits (305), Expect = 6e-33
Identities = 60/184 (32%), Positives = 109/184 (59%)
Query: 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT 365
+ V++ AV+G G+MG GIA +++K++N + +G+ + G V +G++T
Sbjct: 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMT 61
Query: 366 QDKANNALKMLKGVLDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425
K L ++ L Y +F +VD+V+EAV+E+ +KQ + +E+E ILA+NTST
Sbjct: 62 PAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST 121
Query: 426 IDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485
I ++++ + + +G HFF+P H+MPL+E++R E++S + + K + K P+V
Sbjct: 122 ISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181
Query: 486 VGNC 489
V +C
Sbjct: 182 VNDC 185
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (279), Expect = 4e-29
Identities = 60/188 (31%), Positives = 96/188 (51%), Gaps = 6/188 (3%)
Query: 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL--- 364
V+ V VIGGGLMG+GIA VVL + + L K K IE ++R + +
Sbjct: 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 63
Query: 365 --TQDKANNALKMLKGVLDYSE-FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421
+ L + D + D+V+EA++E++ +K ++F L+K H I A+
Sbjct: 64 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 123
Query: 422 NTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKK 481
NTS++ + + T+ QDR G HFF+P VM L+E+++T TS + L+ K + K
Sbjct: 124 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 183
Query: 482 VPVVVGNC 489
PV +
Sbjct: 184 HPVSCKDT 191
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 86.3 bits (212), Expect = 1e-19
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 5/229 (2%)
Query: 6 VTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
V +E G+ VA++ L +P N L+ + L ++ + V+A+VLTG G FS G
Sbjct: 2 VQVEKGH--VAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAG 59
Query: 65 FDINVFQKVHGAGDVSLMPDVSVEL-VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHAR 123
D+ ++V G + + + + KP VAAV G A+ GG LA+ C
Sbjct: 60 ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLV 119
Query: 124 IAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAV 183
+ + +LG E + L R VG A +++L + + + E LGL++ +
Sbjct: 120 VMDEEARLGYTE-VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178
Query: 184 VTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARL 232
+ L+ ++ A ++A +R + +LA L
Sbjct: 179 APPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAAL 227
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.9 bits (190), Expect = 1e-16
Identities = 46/242 (19%), Positives = 96/242 (39%), Gaps = 15/242 (6%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
V + L P NA+ L + F++ + D +A+V++G G F+ G D+
Sbjct: 11 QKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDM 70
Query: 71 ---------QKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
V + +IE C KP++AA+ G +GGG++L C
Sbjct: 71 ASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD 130
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIE-MMLLSKSITSEEGWKLGLI 180
R + E+ +G+ G QRLP+++G + + ++ + ++E GL+
Sbjct: 131 IRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLV 190
Query: 181 DAVVTSEELLKVSRLWALDIAARRKPW----IRSLHRTDKLGSLSEAREVLKLARLQAKK 236
V ++++ + + + P + + S+ E+ + + + +
Sbjct: 191 SRVFPDKDVMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQ 250
Query: 237 TA 238
T
Sbjct: 251 TQ 252
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.6 bits (179), Expect = 3e-15
Identities = 63/211 (29%), Positives = 103/211 (48%), Gaps = 2/211 (0%)
Query: 8 MEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD 66
+E N G+ ++ + N+L+ ++ L + S V+ I++
Sbjct: 9 LEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGA 68
Query: 67 INVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA 126
+ + +V + V+N I + P +AA++GLALGGGLELA+ C R+AA
Sbjct: 69 DLKERAKMSSSEVGPFVSK-IRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAA 127
Query: 127 PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186
++GL E L +IPG GGTQRLPR +G+S A E++ ++ + +E +GLI V+
Sbjct: 128 SSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQ 187
Query: 187 EELLKVSRLWALDIAARRKPWIRSLHRTDKL 217
+ + ALD+A P R KL
Sbjct: 188 NQEGDAAYRKALDLAREFLPQGPVAMRVAKL 218
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 72.1 bits (175), Expect = 2e-14
Identities = 43/183 (23%), Positives = 64/183 (34%), Gaps = 18/183 (9%)
Query: 12 NDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
+D + P V NA V L + A DV ++LTGNG G
Sbjct: 27 DDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCS 86
Query: 71 QKVHGAGDVSLMPDVSVEL----------------VVNLIEDCKKPIVAAVEGLALGGGL 114
S S + V LI K ++ V G A GGG
Sbjct: 87 GGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGH 146
Query: 115 ELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEE 173
L + C +A+ + + +G G G+ L R VG A E+ L ++ T+E+
Sbjct: 147 SLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQ 206
Query: 174 GWK 176
+
Sbjct: 207 MHQ 209
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Score = 66.7 bits (161), Expect = 8e-13
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 5/230 (2%)
Query: 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGG 64
+ V DGVA IT+ P NAL++ + + D A D V A+++TG F G
Sbjct: 5 IGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAG 63
Query: 65 FDINVFQKVHGAGDVSLMPDVSVEL---VVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
F + G V ++ +++ I K+P++AA+ G+A GGGL +++
Sbjct: 64 FYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASD 123
Query: 122 ARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLID 181
I A + T+G+ + L R+VG+ +A+E+ML ++++ EE GL+
Sbjct: 124 MAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVS 183
Query: 182 AVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
V +E +V+ A ++AA G + E +
Sbjct: 184 RVYPKDEFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEI 233
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (155), Expect = 3e-12
Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Query: 12 NDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVF 70
DG+ I P NA+ + + + A S+DD VLTGNG +S G D+ F
Sbjct: 10 EDGITKIMFNRPKKKNAINTEMYHEIMRALKAA-SKDDSIITVLTGNGDYYSSGNDLTNF 68
Query: 71 QKVHGAGDVSLMPDVSVEL--VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
+ G + +V L V D KP++A V G A+G + L A A+ +
Sbjct: 69 TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 128
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEE 188
P LG P + P+++ +KA EM++ K +T+ E GL+ V
Sbjct: 129 ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 188
Query: 189 LLKVSRLWALDIAAR 203
K A
Sbjct: 189 FQKEVWTRLKAFAKL 203
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.8 bits (151), Expect = 1e-11
Identities = 43/243 (17%), Positives = 75/243 (30%), Gaps = 22/243 (9%)
Query: 5 RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
+++ + II LINP NAL L + E A DV ++ +G FS
Sbjct: 6 KISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 64
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVEL---------VVNLIEDCKKPIVAAVEGLALGGGL 114
G D K G + S + V + K ++ + G A+G
Sbjct: 65 GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 124
Query: 115 ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS-KSITSEE 173
L C + L + GGT L + L+ K +
Sbjct: 125 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 184
Query: 174 GWKLGLIDAVVTSEELL--KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLAR 231
+ G I + ++ + ++ L+ S +++LK
Sbjct: 185 MCENGFISKNFNMPSSNAEAFNAKVLEELREK----VKGLYLP----SCLGMKKLLKSNH 236
Query: 232 LQA 234
+ A
Sbjct: 237 IDA 239
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Score = 57.9 bits (138), Expect = 5e-10
Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 4/235 (1%)
Query: 1 MAAPRVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG 59
M+ V + + VA+I NAL+ + L + +R +++ I+L G
Sbjct: 1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSG 58
Query: 60 RFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMG 119
++ + G D D ++ I+ KPI++ VEG GG E+ M
Sbjct: 59 SKVFSAGHDIHELPSGGRDPLSYDDPLRQITRM-IQKFPKPIISMVEGSVWGGAFEMIMS 117
Query: 120 CHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGL 179
IAA + + + LGV G L R G E++ + IT++ +G+
Sbjct: 118 SDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGI 177
Query: 180 IDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQA 234
++ VV EEL + A I+ + I + ++ + + R+Q
Sbjct: 178 LNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQG 232
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 55.0 bits (132), Expect = 4e-09
Identities = 31/226 (13%), Positives = 66/226 (29%), Gaps = 31/226 (13%)
Query: 286 FFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHIL--------NNIYVVLK 337
F +K +I L G L+ ++ VV+
Sbjct: 22 FMRACEVAKEVGKPEIAL----THSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVID 77
Query: 338 EVNSEYLLKGIKT-----IEANVRGLV-TRGKLTQDKANNALKMLKG-------VLDYSE 384
E + + +++ + I +R +V + K + ++ D E
Sbjct: 78 EFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDRE 137
Query: 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-R 440
+ D+VI + + + I + A P I+ + + + +D
Sbjct: 138 AVEGADIVITWLPKG-NKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196
Query: 441 IIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486
I H + + I + V L +GKI + +
Sbjct: 197 ITSYHPGCVPEMKGQVYIAEGYASEEAVNK-LYEIGKIARGKAFKM 241
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Score = 52.9 bits (125), Expect = 2e-08
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 4 PRVTMEVGNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSG 63
P + GV IT +NA+ + GL + + + + V+A++L G GG FS
Sbjct: 9 PGLAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSA 68
Query: 64 GFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCH 121
G + +++ + + L +V + +P+VAAVE +A+G GL LA+
Sbjct: 69 GGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAAD 126
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 5 RVTMEV-GNDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRF 61
RV +E GVA++ NPPVN+L++ + L E+ + + ++LT +
Sbjct: 3 RVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGV 60
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (110), Expect = 2e-06
Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 5/155 (3%)
Query: 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFD--IN 68
DG I L NAL ++ + + A + DD K ++ + G F G D
Sbjct: 10 DGFTQIVLSTRSTEKNALNTEVIKEMVNALNSA-AADDSKLVLFSAAGSVFCCGLDFGYF 68
Query: 69 VFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK 128
V + SL +++ VN KKPIV +V G A+G G + C A K
Sbjct: 69 VRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 128
Query: 129 TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMM 163
P T G P + P+++G + A EM+
Sbjct: 129 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEML 163
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Score = 45.1 bits (105), Expect = 7e-06
Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 13/213 (6%)
Query: 1 MAAP---------RVTMEVGNDGVAIITLINPPV-NALAIPIVAGLKDKFEEATSRDDVK 50
+A P + +E + GV ++T+ L F + + K
Sbjct: 1 LATPFQEYSQKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENK 59
Query: 51 AIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVEGLAL 110
V+ G S +I+ G + ++N + + P++AAV G
Sbjct: 60 --VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVT 117
Query: 111 GGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT 170
M A T P G++PG G P ++G ++ +L + +
Sbjct: 118 NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELD 177
Query: 171 SEEGWKLGLIDAVVTSEELLKVSRLWALDIAAR 203
+ G ++ V++ +ELL + A IA +
Sbjct: 178 ARTALDYGAVNEVLSEQELLPRAWELARGIAEK 210
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Score = 43.3 bits (100), Expect = 3e-05
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 6 VTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVK 50
+ E +D V +ITL +P N + + +KD A + D V+
Sbjct: 1 MVFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVR 46
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 124 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 39.8 bits (92), Expect = 1e-04
Identities = 22/43 (51%), Positives = 24/43 (55%)
Query: 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQ 533
GF VNR FPY LVS GVD RID + FG P+GP
Sbjct: 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAY 43
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 539 | |||
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 100.0 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 100.0 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.78 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.71 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.7 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.66 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.64 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.63 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.61 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.5 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.43 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.38 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.37 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.3 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.3 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.22 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.16 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.13 | |
| d1f0ya1 | 99 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.11 | |
| d1wdka1 | 124 | Fatty oxidation complex alpha subunit, C-terminal | 99.09 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.02 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.78 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.78 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.72 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.72 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 98.72 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.71 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.67 | |
| d1wdka2 | 95 | Fatty oxidation complex alpha subunit, C-terminal | 98.67 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 98.65 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 98.62 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 98.6 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.57 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.56 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.49 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.47 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 98.4 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 98.4 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.32 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 98.24 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.2 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.17 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 98.09 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.05 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.03 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 98.01 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.99 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 97.96 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 97.96 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.95 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.94 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 97.91 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.87 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.86 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.85 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.85 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 97.85 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 97.8 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.76 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 97.75 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.67 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 97.67 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.65 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 97.57 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.55 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.54 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.52 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.47 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.45 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.33 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.31 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.22 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.2 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.18 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 97.14 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.1 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.05 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.03 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 96.97 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.97 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.87 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.85 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.83 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.81 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.78 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.72 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.69 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.67 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.61 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.59 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.56 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.54 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.5 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.5 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.48 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.46 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.44 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.43 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.4 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 96.4 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 96.35 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.35 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.18 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 96.17 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.16 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.15 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.14 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 96.05 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.05 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.04 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.99 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.93 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.9 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.88 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.88 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.83 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 95.79 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 95.79 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.73 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.67 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.67 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 95.58 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.51 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 95.49 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.47 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 95.47 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.45 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.45 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.38 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.36 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.34 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.34 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.27 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.25 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.25 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.2 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.18 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 95.17 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.09 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.09 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.07 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.06 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.02 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.0 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.98 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.94 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 94.93 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.87 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 94.86 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 94.84 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.83 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.79 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 94.78 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.73 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 94.73 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.71 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.61 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 94.6 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.59 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.57 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 94.48 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.46 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.34 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.29 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.28 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.27 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.25 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.23 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 94.19 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 94.14 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.14 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.1 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.1 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 94.05 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 93.96 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.95 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.93 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 93.88 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 93.87 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 93.82 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 93.8 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 93.77 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 93.76 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 93.7 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 93.68 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 93.64 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 93.59 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.59 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.55 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 93.54 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 93.49 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 93.47 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 93.46 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 93.45 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 93.43 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.4 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.39 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 93.37 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.36 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.33 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 93.32 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 93.29 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 93.25 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 93.25 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 93.11 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 92.99 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.97 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 92.96 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 92.95 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 92.8 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 92.8 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.59 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.54 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.43 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.29 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.23 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 91.82 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 91.8 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 91.78 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 91.78 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.7 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 91.68 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 91.58 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.57 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 91.56 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 91.51 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 91.48 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 91.45 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 91.38 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 91.38 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.36 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 91.25 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 91.14 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.13 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 91.09 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 91.06 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 91.03 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 90.99 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.96 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.83 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 90.74 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 90.62 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 90.62 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.51 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 90.47 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.4 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 90.18 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 89.98 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 89.78 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 89.76 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 89.38 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 89.29 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 89.09 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.03 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 88.87 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 88.83 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 88.75 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 88.41 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 88.41 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.38 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 88.33 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.31 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 88.06 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.02 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 87.93 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 87.88 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 87.64 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 87.55 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 87.27 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.16 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 87.04 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 86.79 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 86.67 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 86.6 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 86.45 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 86.19 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 86.15 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 85.94 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 85.9 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 85.7 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 85.66 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 85.63 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 85.45 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 85.26 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 85.17 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 84.89 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 84.79 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 84.61 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 84.4 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 84.34 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 84.28 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 84.22 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 84.1 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 84.07 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 83.76 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 83.53 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 83.51 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 83.42 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 83.31 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 83.18 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 82.92 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 82.83 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 82.44 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 82.21 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 81.87 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 81.84 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 81.72 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 81.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 81.67 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 81.67 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 81.04 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 80.99 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 80.83 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 80.69 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 80.67 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 80.19 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 80.13 |
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=7.8e-56 Score=442.60 Aligned_cols=296 Identities=25% Similarity=0.385 Sum_probs=251.6
Q ss_pred CCC--CcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC
Q 009256 1 MAA--PRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA 76 (539)
Q Consensus 1 M~~--~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~ 76 (539)
|.| +.++++..+|||++|+|| ||+ .|+||.+|+++|.++++.++.|+++|+|||||.|++||+|+|++++......
T Consensus 1 M~~~~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~ 80 (310)
T d1wdka4 1 MIYEGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL 80 (310)
T ss_dssp CCEECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTS
T ss_pred CCcCCceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccc
Confidence 654 578898767899999998 675 6999999999999999999999999999999999999999999998765433
Q ss_pred Cccc--ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhcccccc
Q 009256 77 GDVS--LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLV 154 (539)
Q Consensus 77 ~~~~--~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~v 154 (539)
.... ......++++ ..|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++
T Consensus 81 ~~~~~~~~~~~~~~~~-~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~i 159 (310)
T d1wdka4 81 PDAELIAGNLEANKIF-SDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLI 159 (310)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHH-HHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhh
Confidence 2211 1122344566 779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhccccc---CChHHHHHHHHHHH
Q 009256 155 GLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKL---GSLSEAREVLKLAR 231 (539)
Q Consensus 155 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 231 (539)
|..+|++++++|++++|+||+++||||+|||++++.+.+.++++++++.++++.......... ..+.... ......
T Consensus 160 G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 238 (310)
T d1wdka4 160 GVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPKLEKLKLNAIEQMM-AFETAK 238 (310)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGGGSCCSCCHHHHHH-HHHHHH
T ss_pred hhhhhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccccchhhhH-HHHHhh
Confidence 999999999999999999999999999999999999999999999998876543322111111 1111111 112222
Q ss_pred H-HHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCCCC
Q 009256 232 L-QAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVPNV 298 (539)
Q Consensus 232 ~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~~~ 298 (539)
. ..+++..+||++.+++++++.+...+++++++.|++.|.+++.|++++++|++|++||..+|.++.
T Consensus 239 ~~~~~~~~~~~pA~~~~l~~v~~~~~~~~~~~L~~E~~~f~~l~~t~~a~~~i~aF~~kr~~~k~a~~ 306 (310)
T d1wdka4 239 GFVAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSASNCLIGLFLNDQELKKKAKV 306 (310)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhhhhcCCCCC
Confidence 2 356888999999999999999999999999999999999999999999999999999999886644
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-54 Score=418.64 Aligned_cols=254 Identities=21% Similarity=0.286 Sum_probs=222.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecC--CCCcccCCCchhhhhhcCCC
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGN--GGRFSGGFDINVFQKVHGAG 77 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~--g~~F~aG~Dl~~~~~~~~~~ 77 (539)
|+|++|.+++ +|+|++||||||+ .|+||.+|+.+|.+++++++ ++++++|||+|. |++||+|+|++++......
T Consensus 1 M~~~~i~~~~-~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~- 77 (261)
T d1ef8a_ 1 MSYQYVNVVT-INKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD- 77 (261)
T ss_dssp CCCSSEEEEE-ETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----C-
T ss_pred CCCCEEEEEE-ECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCcc-
Confidence 9999999999 8999999999995 69999999999999999997 457999999986 5799999999998764322
Q ss_pred cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 78 DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 78 ~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
...+....++++ +.|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++|++|..
T Consensus 78 -~~~~~~~~~~~~-~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~ 155 (261)
T d1ef8a_ 78 -PLSYDDPLRQIT-RMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH 155 (261)
T ss_dssp -TTCTTSHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred -ccccccchhhhH-HHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence 223445566777 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
++++++++|+.++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 156 ~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~---------------------------- 207 (261)
T d1ef8a_ 156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIA---------------------------- 207 (261)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred ccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999886543
Q ss_pred CCCchhHHHHHHHHHHhhcCCchh--HHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYS--GVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~--~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++......+.. .++.+...+..++.|+|++||++||+|||+|++.
T Consensus 208 --------~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~s~D~~Egi~AfleKR~P~f~ 259 (261)
T d1ef8a_ 208 --------VIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFV 259 (261)
T ss_dssp --------HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCC
T ss_pred --------HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCcCC
Confidence 3466777666665544 4455566788899999999999999999999864
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.4e-54 Score=424.65 Aligned_cols=254 Identities=33% Similarity=0.428 Sum_probs=229.0
Q ss_pred CCCcEEEEEe--cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc
Q 009256 2 AAPRVTMEVG--NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD 78 (539)
Q Consensus 2 ~~~~v~~~~~--~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~ 78 (539)
+|++|.++.. +++|++||||||+ .|+||.+|+.+|.++++.++.|+++|+|||||.|++||+|+|++++.......
T Consensus 2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~- 80 (260)
T d1mj3a_ 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQD- 80 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHH-
T ss_pred CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhccchhh-
Confidence 4789999984 3589999999996 69999999999999999999999999999999999999999999986532211
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
.+.....+++ ..+.++||||||+|||+|+|||++|+++||||||+++++|++||+++|++|++|++++|+|++|.++
T Consensus 81 --~~~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~~~ 157 (260)
T d1mj3a_ 81 --CYSGKFLSHW-DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSL 157 (260)
T ss_dssp --HHHC--CCGG-GGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCHHH
T ss_pred --hhHHHHHHHH-HHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCHHH
Confidence 1111222344 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++|||++|++++++.+.+.+++.+++..++.+++
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~----------------------------- 208 (260)
T d1mj3a_ 158 AMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVA----------------------------- 208 (260)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHH-----------------------------
T ss_pred HHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999876443
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.....+++++++.|.+.+..++.|+|++|++++|+|||+|++.
T Consensus 209 -------~~K~~l~~~~~~~l~~~l~~E~~~~~~~~~s~d~~egi~aFleKR~P~f~ 258 (260)
T d1mj3a_ 209 -------MAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANFK 258 (260)
T ss_dssp -------HHHHHHHGGGSSCHHHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCCC
T ss_pred -------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 45788889989999999999999999999999999999999999999863
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.3e-54 Score=419.67 Aligned_cols=253 Identities=20% Similarity=0.291 Sum_probs=227.3
Q ss_pred CCcEEEEEecCcEEEEEeC-CCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc--
Q 009256 3 APRVTMEVGNDGVAIITLI-NPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD-- 78 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~-~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~-- 78 (539)
|++|.++. +++|++|++| ||+ .|++|.+|+.+|.++++.++.| ++++|||||.|++||+|+|++++........
T Consensus 1 y~~i~v~~-~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d-~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~ 78 (258)
T d2fw2a1 1 YRDIVVKK-EDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNT 78 (258)
T ss_dssp CCSEEEEE-ETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHS-SCSEEEEEECSSCSBCCBCHHHHHHHHHHCHHH
T ss_pred CceEEEEE-ECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCccccccccccchhhhcccccccc
Confidence 68899999 8999999997 685 6999999999999999999887 5799999999999999999999865322211
Q ss_pred -ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 79 -~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
...+.....+++ ..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..
T Consensus 79 ~~~~~~~~~~~~~-~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~ 157 (258)
T d2fw2a1 79 ASLEMVDTIKNFV-NTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA 157 (258)
T ss_dssp HHHHHHHHHHHHH-HHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred hhhHHHHHHHHHH-HhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcc
Confidence 122344455666 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
++++|+++|++++|+||+++||||+|||++++.+++.+++++|++.|+.+++
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~---------------------------- 209 (258)
T d2fw2a1 158 SANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLE---------------------------- 209 (258)
T ss_dssp HHHHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHH----------------------------
T ss_pred ccchhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999876543
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.++.....+++++++.|.+.+..++.|+|++||+++|+|||+|++
T Consensus 210 --------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~s~d~~Egi~af~EKR~p~f 258 (258)
T d2fw2a1 210 --------ECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVENKIDEF 258 (258)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHSSCCCC
T ss_pred --------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 3467777777778899999999999999999999999999999999873
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=1e-53 Score=419.90 Aligned_cols=256 Identities=23% Similarity=0.316 Sum_probs=230.8
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc---
Q 009256 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--- 78 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--- 78 (539)
|++|.+++ +|+|++|||||| +.|+||.+|+.+|.++++++++|+++++|||||.|++||+|+|++++........
T Consensus 2 y~~i~~~i-~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (269)
T d1nzya_ 2 YEAIGHRV-EDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD 80 (269)
T ss_dssp CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred CCceEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence 58899999 799999999999 5799999999999999999999999999999999999999999998854221110
Q ss_pred -ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHH
Q 009256 79 -VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLS 157 (539)
Q Consensus 79 -~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~ 157 (539)
........+.++ .++.++||||||+|||+|+|||++|+++||+||++++++|++||.++|+.|++|+++++++++|..
T Consensus 81 ~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~ 159 (269)
T d1nzya_ 81 HFRIAALWWHQMI-HKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMR 159 (269)
T ss_dssp HHHHHHHHHHHHH-HHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChh
Confidence 111222334556 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 009256 158 KAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKT 237 (539)
Q Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (539)
+|+++++||+.++|+||+++||||+|||++++.+++.++|++|++.|+.+++
T Consensus 160 ~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~---------------------------- 211 (269)
T d1nzya_ 160 RAMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQV---------------------------- 211 (269)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHH----------------------------
T ss_pred hhhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHH----------------------------
Confidence 9999999999999999999999999999999999999999999999875443
Q ss_pred CCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 238 APNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.+++....+++++++.|.+.+..++.++|++|++.+|+|||+|++.+
T Consensus 212 --------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~e~v~aflekrkp~~~~ 262 (269)
T d1nzya_ 212 --------MAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDGHRADRPQ 262 (269)
T ss_dssp --------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHSTTHHHHHHHHHTTCCTTCCS
T ss_pred --------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHCCCCCCcCC
Confidence 457788888889999999999999999999999999999999999998744
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-53 Score=417.86 Aligned_cols=253 Identities=23% Similarity=0.256 Sum_probs=225.4
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCC-Cccc
Q 009256 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGA-GDVS 80 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~-~~~~ 80 (539)
|+.+.++.+++||++||| || +.|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... +...
T Consensus 8 ~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 86 (263)
T d1wz8a1 8 YPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALL 86 (263)
T ss_dssp CTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHH
T ss_pred CCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccc
Confidence 788999986789999999 67 57999999999999999999999999999999999999999999998754322 1122
Q ss_pred ccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHH
Q 009256 81 LMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAI 160 (539)
Q Consensus 81 ~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~ 160 (539)
.+.....+++ ..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|..+|+
T Consensus 87 ~~~~~~~~~~-~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~a~ 165 (263)
T d1wz8a1 87 RVFWEARDLV-LGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAK 165 (263)
T ss_dssp HHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHHHH
T ss_pred cchhhhhHHH-HHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 3334455666 679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCC
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPN 240 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (539)
+++++|++++|+||+++||||+|||++++.+++.++|++|++.||.+++
T Consensus 166 ~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~------------------------------- 214 (263)
T d1wz8a1 166 YHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALH------------------------------- 214 (263)
T ss_dssp HHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH-------------------------------
T ss_pred hhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHH-------------------------------
Confidence 9999999999999999999999999999999999999999999986543
Q ss_pred chhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 241 MPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|++++...... .+.++.|...+..++.|+|++|+++||+|||+|++
T Consensus 215 -----~~K~~l~~~~~~~-~~~~~~e~~~~~~~~~s~d~~Egi~Af~eKR~P~f 262 (263)
T d1wz8a1 215 -----HTKHALNHWYRSF-LPHFELSLALEFLGFSGKELEEGLKALKEKRPPEF 262 (263)
T ss_dssp -----HHHHHHHHHHHTT-HHHHHHHHHHHHHGGGSHHHHHHHHHHHTTSCCCC
T ss_pred -----HHHHHHHHHHhCh-HHHHHHHHHHHHHHccCHHHHHHHHHHhCCCCCCC
Confidence 3456666665544 45689999999999999999999999999999884
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.2e-52 Score=412.31 Aligned_cols=257 Identities=19% Similarity=0.311 Sum_probs=226.5
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCccc
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVS 80 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (539)
+|+++.++..+++|++||||||+ .|+||.+|+.+|.++++.+++|+++|+|||||.|++||+|+|++++..........
T Consensus 1 ~y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~ 80 (275)
T d1dcia_ 1 AYESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGD 80 (275)
T ss_dssp CCSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCS
T ss_pred CCceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhcccccccc
Confidence 58899886547899999999995 69999999999999999999999999999999999999999999887643332111
Q ss_pred c----------cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhcc
Q 009256 81 L----------MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRL 150 (539)
Q Consensus 81 ~----------~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l 150 (539)
. +.....+++ ..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~ 159 (275)
T d1dcia_ 81 DVARIAWYLRDLISRYQKTF-TVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRL 159 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHG
T ss_pred cccchhhhhccchhhhHHHH-HHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccc
Confidence 1 112233455 67999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHH-HHHHHHcCCCCCHHHHHHcCCcceecCcch-HHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHH
Q 009256 151 PRLVGLSK-AIEMMLLSKSITSEEGWKLGLIDAVVTSEE-LLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLK 228 (539)
Q Consensus 151 ~r~vG~~~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~-l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (539)
++++|... +++++++|++++|+||+++||||+|+|+++ +.+++.+++++|++.+|.+++
T Consensus 160 ~~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~------------------- 220 (275)
T d1dcia_ 160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQ------------------- 220 (275)
T ss_dssp GGTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHH-------------------
T ss_pred ccccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHH-------------------
Confidence 99999554 568999999999999999999999998765 678889999999999986543
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 229 LARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++.+...+++++++.|...+..++.++|++||++||+|||+|||.
T Consensus 221 -----------------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~Egi~AfleKR~pk~~ 270 (275)
T d1dcia_ 221 -----------------GSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKKDSKSI 270 (275)
T ss_dssp -----------------HHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSHHHHHHHHHHHTTCCGGGC
T ss_pred -----------------HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 44677888888899999999999999999999999999999999999974
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.1e-52 Score=407.51 Aligned_cols=248 Identities=24% Similarity=0.326 Sum_probs=221.6
Q ss_pred EEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc--ccccchH
Q 009256 9 EVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--VSLMPDV 85 (539)
Q Consensus 9 ~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--~~~~~~~ 85 (539)
++++|+|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|+.||+|+|++++........ ...+...
T Consensus 3 ~ie~G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~ 82 (253)
T d1uiya_ 3 QVEKGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLS 82 (253)
T ss_dssp EEECSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred EEeeCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhh
Confidence 4434779999999996 699999999999999999999999999999999999999999998876543321 1122233
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHc
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (539)
...++ ..|.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++| +|++++|+|++|..+|++|++|
T Consensus 83 ~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~-~~~~~~l~~~~g~~~a~~l~l~ 160 (253)
T d1uiya_ 83 LMRLF-HRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVA-ALVSVILVRAVGEKAAKDLLLT 160 (253)
T ss_dssp HHHHH-HHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCC-HHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhhh-hHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhccccccc-ccchhhhhcccCHHHHHHHhhc
Confidence 44555 679999999999999999999999999999999999999999999999887 4668899999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCchhHH
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMPQHQ 245 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 245 (539)
|++++|+||+++||||+|+|++++.+.+.++++++++.|+.+++
T Consensus 161 g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~------------------------------------ 204 (253)
T d1uiya_ 161 GRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLR------------------------------------ 204 (253)
T ss_dssp CCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHH------------------------------------
T ss_pred CcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHHH------------------------------------
Confidence 99999999999999999999999999999999999999875432
Q ss_pred HHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccC
Q 009256 246 ACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSK 294 (539)
Q Consensus 246 ~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~ 294 (539)
.+|+.+++....+++++++.|...+..++.|+|++||+++|+|||+|++
T Consensus 205 ~~K~~l~~~~~~~l~~~l~~e~~~~~~~~~s~d~~egi~af~eKR~P~f 253 (253)
T d1uiya_ 205 LTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKRPPRF 253 (253)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCC
Confidence 4578888888999999999999999999999999999999999999874
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-52 Score=409.92 Aligned_cols=249 Identities=27% Similarity=0.409 Sum_probs=218.7
Q ss_pred EEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCCchhhhhhcCCCcccccchHH
Q 009256 9 EVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSLMPDVS 86 (539)
Q Consensus 9 ~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 86 (539)
+.+++||++||||||+ +|+||.+|+.+|.++++.++.|+++|+|||||.|+ +||+|.|++++...... ....+....
T Consensus 10 ~~~~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~-~~~~~~~~~ 88 (266)
T d1hzda_ 10 EEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSS-EVGPFVSKI 88 (266)
T ss_dssp CGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHH-HHHHHHHHH
T ss_pred EEecCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccch-hhhhhhhHH
Confidence 3335789999999996 69999999999999999999999999999999874 79999999988654322 122344455
Q ss_pred HHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcC
Q 009256 87 VELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLS 166 (539)
Q Consensus 87 ~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g 166 (539)
.+++ +.|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..+|+++++||
T Consensus 89 ~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg 167 (266)
T d1hzda_ 89 RAVI-NDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSA 167 (266)
T ss_dssp HHHH-HHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHH-HHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccC
Confidence 5666 779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCCcceecCcchHH----HHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCCCch
Q 009256 167 KSITSEEGWKLGLIDAVVTSEELL----KVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAPNMP 242 (539)
Q Consensus 167 ~~~~a~eA~~~Glv~~vv~~~~l~----~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (539)
++++|+||+++||||+|||++++. +.+.+++++++..||.+++
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~~~l~~~~~~~a~~~a~~i~~~~p~a~~--------------------------------- 214 (266)
T d1hzda_ 168 RVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMR--------------------------------- 214 (266)
T ss_dssp CEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHH---------------------------------
T ss_pred CccCHHHhhcccccccccChhhhhhHHHHHHHHHHHhcccCChHHHH---------------------------------
Confidence 999999999999999999987754 4555555666667765432
Q ss_pred hHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCC
Q 009256 243 QHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKV 295 (539)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~ 295 (539)
.+|+.++++...+++++++.|...+..++.|+|++|+++||+|||+|++.
T Consensus 215 ---~~K~~l~~~~~~~~~~~l~~e~~~~~~~~~s~d~~Eg~~AF~eKR~P~f~ 264 (266)
T d1hzda_ 215 ---VAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPPRYK 264 (266)
T ss_dssp ---HHHHHHHHHHTSCHHHHHHHHHHHHHTTTTCHHHHHHHHHHTTTSCCCCC
T ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCC
Confidence 45788888889999999999999999999999999999999999999864
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.8e-50 Score=401.04 Aligned_cols=257 Identities=24% Similarity=0.267 Sum_probs=209.5
Q ss_pred CCCcEEEEEe-cCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-------CCcccCCCchhhhh
Q 009256 2 AAPRVTMEVG-NDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-------GRFSGGFDINVFQK 72 (539)
Q Consensus 2 ~~~~v~~~~~-~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-------~~F~aG~Dl~~~~~ 72 (539)
+++.|.++.+ +++|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.+ +.||+|.|++.+..
T Consensus 16 ~~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~ 95 (297)
T d1q52a_ 16 DLTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGR 95 (297)
T ss_dssp TCSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-------
T ss_pred CCcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcc
Confidence 4567888774 6899999999996 5999999999999999999999999999999974 45777788876543
Q ss_pred hcCCC----------cccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCC
Q 009256 73 VHGAG----------DVSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVI 141 (539)
Q Consensus 73 ~~~~~----------~~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~ 141 (539)
..... ...........++ ..|.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~ 174 (297)
T d1q52a_ 96 SGYQYASGDTADTVDVARAGRLHILEVQ-RLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSF 174 (297)
T ss_dssp ----------------------CHHHHH-HHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCC
T ss_pred cccccccccccchhhhHHHHHHHHHHHH-HHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccc
Confidence 21110 0111122234566 6799999999999999999999999999999999865 5799999999999
Q ss_pred CCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChH
Q 009256 142 PGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLS 221 (539)
Q Consensus 142 p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~ 221 (539)
|+++++++|+|++|.++|+++++||++++|+||+++||||+|||++++.+.+.++++++++.||.+++
T Consensus 175 p~~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~------------ 242 (297)
T d1q52a_ 175 DGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQR------------ 242 (297)
T ss_dssp CCSTTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------
T ss_pred cccccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHHHHHhhhhccCCC
Q 009256 222 EAREVLKLARLQAKKTAPNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVHVFFAQRATSKVP 296 (539)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~af~~kr~~~~~~ 296 (539)
.+|+.++.. ...+.+....|.+.+..++.|+|++||++||+|||+|++.|
T Consensus 243 ------------------------~~K~~~~~~-~~~~~~~~~~~~~~~~~~~~s~d~~Egv~AF~eKR~P~f~~ 292 (297)
T d1q52a_ 243 ------------------------MLKFAFNLL-DDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQKRPPDWSP 292 (297)
T ss_dssp ------------------------HHHHHHHHT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTTSCCCCTT
T ss_pred ------------------------HHHHHHHHh-hcChHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCCCCC
Confidence 234555443 23445555678888899999999999999999999998754
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5e-50 Score=387.82 Aligned_cols=240 Identities=23% Similarity=0.285 Sum_probs=211.9
Q ss_pred CCcEEEEEecCcEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCc---
Q 009256 3 APRVTMEVGNDGVAIITLINP-PVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGD--- 78 (539)
Q Consensus 3 ~~~v~~~~~~~~v~~i~l~~p-~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~--- 78 (539)
|++|.+++ +|+|++|||||| +.|++|.+|+.+|.+++++++.|+.+ +||++|.|++||+|+|++++........
T Consensus 2 ~~~i~~~~-~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 79 (245)
T d2f6qa1 2 FETLVVTS-EDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEK 79 (245)
T ss_dssp CSSEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHH
T ss_pred cceEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhcccccccccc
Confidence 67899999 799999999999 57999999999999999999999877 8999999999999999999876433221
Q ss_pred ccccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHH
Q 009256 79 VSLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 79 ~~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
.........+++ ++|.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+
T Consensus 80 ~~~~~~~~~~~~-~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~ 158 (245)
T d2f6qa1 80 AKNNAVLLREFV-GCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK 158 (245)
T ss_dssp HHHHHHHHHHHH-HHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred cchhhhHHHHHH-hhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccch
Confidence 112222334566 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhC
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTA 238 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (539)
|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+++
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~----------------------------- 209 (245)
T d2f6qa1 159 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALR----------------------------- 209 (245)
T ss_dssp HHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHH-----------------------------
T ss_pred hhhhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHH-----------------------------
Confidence 999999999999999999999999999999999999999999999886543
Q ss_pred CCchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHh
Q 009256 239 PNMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRG 281 (539)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~ 281 (539)
.+|+.++.....++++.++.|...+..++.|+|+++
T Consensus 210 -------~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~n 245 (245)
T d2f6qa1 210 -------ISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN 245 (245)
T ss_dssp -------HHHHHHHGGGHHHHHHHHHHHHHHHHHHHTSHHHHC
T ss_pred -------HHHHHHHhhhhcCHHHHHHHHHHHHHHHhcCcccCC
Confidence 446788887778889999999999999999999874
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=6.6e-49 Score=380.64 Aligned_cols=243 Identities=21% Similarity=0.288 Sum_probs=215.4
Q ss_pred CcEEEEEe-cCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCC-CcccCCCchhhhhhcCCCcccc
Q 009256 4 PRVTMEVG-NDGVAIITLINPPVNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGG-RFSGGFDINVFQKVHGAGDVSL 81 (539)
Q Consensus 4 ~~v~~~~~-~~~v~~i~l~~p~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~-~F~aG~Dl~~~~~~~~~~~~~~ 81 (539)
+.+.++.+ ++||++||||||+.|+||.+|+++|.++++.+++|+++++|||+|.|+ +||+|+|++++..... .....
T Consensus 2 ~~ilve~~~~~gIa~itln~p~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~~~~-~~~~~ 80 (249)
T d1sg4a1 2 QRVLVEPDAGAGVAVMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSP-AHYAG 80 (249)
T ss_dssp CSEEEEEETTTTEEEEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCH-HHHHH
T ss_pred CcEEEEEECCCCEEEEEECCCCcCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEeccccccccccccc-ccccc
Confidence 56777775 578999999999899999999999999999999999999999999886 6999999999865322 12233
Q ss_pred cchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceE--eCCcccCCCCCCcchhhccccccCHHHH
Q 009256 82 MPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQL--GLPELTLGVIPGFGGTQRLPRLVGLSKA 159 (539)
Q Consensus 82 ~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f--~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 159 (539)
+....++++ .++.++||||||+|||+|+|||++|+++||+||++++++| ++||+++|++|++|++++|++++|+.+|
T Consensus 81 ~~~~~~~~~-~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 159 (249)
T d1sg4a1 81 YWKAVQELW-LRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA 159 (249)
T ss_dssp HHHHHHHHH-HHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred cchhhHHHH-HhhhcCccccchhhcccccccccccccccccceeeccccccccccccccccccccccccccccccccccc
Confidence 444555667 7799999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhhhhhcccccCChHHHHHHHHHHHHHHHHhCC
Q 009256 160 IEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIRSLHRTDKLGSLSEAREVLKLARLQAKKTAP 239 (539)
Q Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (539)
++++++|++++|++|+++||||+|+|++++.+++.++++++++.|+.+++
T Consensus 160 ~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~------------------------------ 209 (249)
T d1sg4a1 160 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQ------------------------------ 209 (249)
T ss_dssp HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHH------------------------------
T ss_pred cccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHH------------------------------
Confidence 99999999999999999999999999999999999999999999876543
Q ss_pred CchhHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhCCHHHHhHHH
Q 009256 240 NMPQHQACLDVIEEGIVHGGYSGVLKEAKVFKELVMLDTSRGLVH 284 (539)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~s~~~~~~~~ 284 (539)
.+|+.+++.....+.+.++.|.+.+...+.+++++++++
T Consensus 210 ------~~K~~~~~~~~~~l~~~~~~e~~~~~~~~~~e~~~~~le 248 (249)
T d1sg4a1 210 ------LTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQ 248 (249)
T ss_dssp ------HHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSHHHHHHHT
T ss_pred ------HHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCHHHHHhcC
Confidence 345667777777788889999999999999999998874
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=7.4e-48 Score=368.76 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=179.9
Q ss_pred EEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCC-CCcccCCCchhhhhhcCCCcccccchH
Q 009256 8 MEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNG-GRFSGGFDINVFQKVHGAGDVSLMPDV 85 (539)
Q Consensus 8 ~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g-~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 85 (539)
++.++|+|++||||||+ .|++|.+|+.+|.+++++++.|+++|+|||+|.| ++||+|+|++++...........+...
T Consensus 3 ~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (230)
T d2a7ka1 3 FEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDR 82 (230)
T ss_dssp EEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHH
T ss_pred EEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhcccccccccccccccccchhh
Confidence 45557899999999994 6999999999999999999999999999999876 789999999998765433333344455
Q ss_pred HHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHc
Q 009256 86 SVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLL 165 (539)
Q Consensus 86 ~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~ 165 (539)
..+++ +++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+ .+|++++|..+|++++++
T Consensus 83 ~~~~~-~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~l~ 160 (230)
T d2a7ka1 83 VIDLY-QAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEIIYQ 160 (230)
T ss_dssp HHHHH-HHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHHHH
T ss_pred hhhhh-hcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-cccccccccccccccccc
Confidence 66677 7799999999999999999999999999999999999999999999999998765 579999999999999999
Q ss_pred CCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 166 SKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 166 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
|++++|+||+++||||+|||++++.+++.+++++|++.||.+++
T Consensus 161 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 204 (230)
T d2a7ka1 161 CQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFI 204 (230)
T ss_dssp CCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred cccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999986543
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.6e-46 Score=365.50 Aligned_cols=186 Identities=24% Similarity=0.280 Sum_probs=163.5
Q ss_pred CCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc-
Q 009256 2 AAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV- 79 (539)
Q Consensus 2 ~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~- 79 (539)
.++.|.+++ +|+|++||||||+ .|++|.+|+.+|.+++++++.|+++++|||||+|++||+|+|++++.........
T Consensus 3 ~~e~i~~~~-~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~ 81 (266)
T d1pjha_ 3 QNEKISYRI-EGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNK 81 (266)
T ss_dssp CBTTEEEEE-ETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------C
T ss_pred CCCeEEEEE-ECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhcccccccc
Confidence 357899999 8999999999996 6999999999999999999999999999999999999999999998764322111
Q ss_pred ---------cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEee-CCceEeCCcccCCCCCCcchhhc
Q 009256 80 ---------SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAA-PKTQLGLPELTLGVIPGFGGTQR 149 (539)
Q Consensus 80 ---------~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~ 149 (539)
..+......++ ..+.++||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~ 160 (266)
T d1pjha_ 82 YPSETSKWVSNFVARNVYVT-DAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVS 160 (266)
T ss_dssp CSSHHHHHHHHTHHHHHHHH-HHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHH
T ss_pred ccchhhHHHHHHHHHHHHHH-HHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccc
Confidence 11223334455 67999999999999999999999999999999997 56889999999999999999999
Q ss_pred cccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCcchH
Q 009256 150 LPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTSEEL 189 (539)
Q Consensus 150 l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 189 (539)
|+|++|.++|+++++||++++|+||+++||||+|+++++.
T Consensus 161 l~r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~ 200 (266)
T d1pjha_ 161 LPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSS 200 (266)
T ss_dssp HHHHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTT
T ss_pred cccccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhh
Confidence 9999999999999999999999999999999999976554
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=5.9e-46 Score=359.62 Aligned_cols=205 Identities=20% Similarity=0.292 Sum_probs=184.7
Q ss_pred CCCCcEEEEEecCcEEEEEeCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcc
Q 009256 1 MAAPRVTMEVGNDGVAIITLINPP-VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDV 79 (539)
Q Consensus 1 M~~~~v~~~~~~~~v~~i~l~~p~-~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~ 79 (539)
|.|++|++++ +|+|++||||||+ .|+||.+|+.+|.+++++++.|+++|+|||||.|++||+|+|++++...... ..
T Consensus 10 ~~y~~i~~~~-~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~~~~~~-~~ 87 (249)
T d1szoa_ 10 QKYENIRLER-DGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPH-DW 87 (249)
T ss_dssp TSCTTEEEEE-ETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHH-HH
T ss_pred CCCCeEEEEE-ECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhhccccc-ch
Confidence 4578899999 7999999999997 5999999999999999999999999999999999999999999988543221 22
Q ss_pred cccchHHHHHHHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEe-CCcccCCCCCCcchhhccccccCHHH
Q 009256 80 SLMPDVSVELVVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLG-LPELTLGVIPGFGGTQRLPRLVGLSK 158 (539)
Q Consensus 80 ~~~~~~~~~~~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~-~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (539)
..+....++++ +++.++||||||+|||+|. ||++|+++||+||++++++|. +||+++|++|++|++++|+|++|..+
T Consensus 88 ~~~~~~~~~l~-~~i~~~~~pvIa~v~g~~~-GG~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~~ 165 (249)
T d1szoa_ 88 DEIIFEGQRLL-NNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNR 165 (249)
T ss_dssp HHHHHHHHHHH-HHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHH
T ss_pred hhhhhhhhhhh-hhcccCcccceeeeccccc-cccccccccccccccCCcEEEEeeccccccccccccccccccccCccc
Confidence 33334455667 7799999999999999885 577999999999999999995 79999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcCchhhh
Q 009256 159 AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARRKPWIR 209 (539)
Q Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~ 209 (539)
|+++++||++++++||+++||||+|||++++.+++.++++++++.|+.+++
T Consensus 166 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 216 (249)
T d1szoa_ 166 GRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARR 216 (249)
T ss_dssp HHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred eeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999987654
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=4.2e-37 Score=283.52 Aligned_cols=185 Identities=32% Similarity=0.626 Sum_probs=180.0
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
+.|+||+|||+|.||++||..++.+|++|++||++++.++++.+++...+.+.+..+.+++...+..++++..+++.+++
T Consensus 2 ~~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (186)
T d1wdka3 2 KDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF 81 (186)
T ss_dssp CCCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeeecCCCCc
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIVRTERTS 465 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~~~~~t~ 465 (539)
.+||+|||++||++++|+.+|++|++++++++||+||||++++++++..+.+|+|++|+|||+||+.++++||++++.|+
T Consensus 82 ~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~~lVEiv~~~~T~ 161 (186)
T d1wdka3 82 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSS 161 (186)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTCCEEEEEECSSCC
T ss_pred cccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccCCeEEECCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCceeEEEcCcc
Q 009256 466 AQVILDLMTVGKIIKKVPVVVGNCT 490 (539)
Q Consensus 466 ~e~~~~~~~l~~~lg~~~v~v~~~~ 490 (539)
+++++++..+++.+|+.|++|+|.|
T Consensus 162 ~~~~~~~~~~~~~lgk~pv~v~d~P 186 (186)
T d1wdka3 162 DLAVATTVAYAKKMGKNPIVVNDCP 186 (186)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeccC
Confidence 9999999999999999999999876
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-37 Score=282.73 Aligned_cols=185 Identities=33% Similarity=0.521 Sum_probs=174.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC-----HHHHHHHhhcccccC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT-----QDKANNALKMLKGVL 380 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~ 380 (539)
+.|+||+|||+|.||++||..++.+||+|++||++++.++++.+++++.+...++++... ....+..++++..++
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 81 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 81 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence 468999999999999999999999999999999999999999999999999999988764 234456678899898
Q ss_pred Cc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeeeee
Q 009256 381 DY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLEIV 459 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~vei~ 459 (539)
++ +++++||+||||+||+.++|+++|+++++.+++++|++||||++++++++..+.+|+|++|+|||+||+.+++|||+
T Consensus 82 d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~~~~lVEIv 161 (192)
T d1f0ya2 82 DAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVI 161 (192)
T ss_dssp CHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEE
T ss_pred hhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccCcccEEEEc
Confidence 88 77999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcCcc
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGNCT 490 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~~~ 490 (539)
+++.|++++++.+..|++.+|+.|++++|.|
T Consensus 162 ~g~~T~~~~i~~~~~~~~~lgk~pV~v~D~P 192 (192)
T d1f0ya2 162 KTPMTSQKTFESLVDFSKALGKHPVSCKDTP 192 (192)
T ss_dssp CCTTCCHHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEeeccC
Confidence 9999999999999999999999999999876
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.78 E-value=1.2e-18 Score=156.20 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=117.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||++||+.|.++||+|++||++++.++++.+ .+.++ ...++.+.+++|
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~~~~ 58 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-----------RQLVD-----------EAGQDLSLLQTA 58 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGGTTC
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-----------hhccc-----------eeeeeccccccc
Confidence 47999999999999999999999999999999988777633 22111 234455889999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCC------------CCee
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV------------MPLL 456 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~------------~~~v 456 (539)
|+||+|+| ......+++++.++++++++|++.++.. ............++++.|++.++.. ...+
T Consensus 59 DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~~s~~-~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~ 135 (165)
T d2f1ka2 59 KIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDVASVK-TAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135 (165)
T ss_dssp SEEEECSC--HHHHHHHHHHHGGGSCTTCEEEECCSCC-HHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEE
T ss_pred ccccccCc--Hhhhhhhhhhhhhhcccccceeeccccc-hHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeE
Confidence 99999998 5567889999999999999988665543 2222111122346889998766532 2344
Q ss_pred eeecCCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 457 EIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 457 ei~~~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
.+++...++++.++.++++++.+|.++++|
T Consensus 136 il~~~~~~~~~~~~~v~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165 (165)
T ss_dssp EEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence 577788899999999999999999998875
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.71 E-value=6.6e-18 Score=150.69 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=112.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||||||+|.||.+||.+|+++||+|++||+++++.+.+.+ . ......+. +.+++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~-----------~-------------~~~~~~~~~e~~~~ 56 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA-----------A-------------GAETASTAKAIAEQ 56 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------T-------------TCEECSSHHHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHH-----------h-------------hhhhcccHHHHHhC
Confidence 47999999999999999999999999999999998887643 1 22334444 67899
Q ss_pred cCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeee
Q 009256 388 VDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIV 459 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~ 459 (539)
||+||.|+|++.+++..++ ..+.+.+++++++++.++..+-. ++++.+. ..-+++..+....| ..+++.-++
T Consensus 57 ~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~ 136 (161)
T d1vpda2 57 CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMV 136 (161)
T ss_dssp CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEE
Confidence 9999999998877776665 34888899999988766654432 3333332 33345554433222 234555566
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
.| +++.+++++++++.+|+++++++
T Consensus 137 gG---~~~~~~~~~~il~~~~~~i~~~G 161 (161)
T d1vpda2 137 GG---DKAIFDKYYDLMKAMAGSVVHTG 161 (161)
T ss_dssp ES---CHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cC---CHHHHHHHHHHHHHhcCceEECC
Confidence 66 78999999999999999998875
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=1.1e-16 Score=144.21 Aligned_cols=152 Identities=16% Similarity=0.160 Sum_probs=116.0
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 383 (539)
|+||+|||+|.||++||+.|.++|+ +|++||+|++.++.+.+ .+.++ ...++. .
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~-----------~~~~~-----------~~~~~~~~~ 58 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD-----------LGIID-----------EGTTSIAKV 58 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH-----------TTSCS-----------EEESCGGGG
T ss_pred CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH-----------hhcch-----------hhhhhhhhh
Confidence 5689999999999999999999996 78999999998887643 22211 112222 3
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCCCCcEEEeccCCCCC----------
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAH---------- 451 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~~~r~vg~h~~~p~~---------- 451 (539)
...++|+||.|+| +.....++.++.+++++++++++.+|.... ..+...+ +.++++.||+....
T Consensus 59 ~~~~~dlIila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~--~~~~i~~hPm~G~e~sG~~~a~~~ 134 (171)
T d2g5ca2 59 EDFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENIL--GKRFVGGHPIAGTEKSGVEYSLDN 134 (171)
T ss_dssp GGTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHH--GGGEECEEEECCCSCCSGGGCCSS
T ss_pred hccccccccccCC--chhhhhhhhhhhccccccccccccccccHHHHHHHHHhh--cccccccccccccccccHHHHHHH
Confidence 3468999999999 556778889999999999999887775443 2333333 45899999964331
Q ss_pred --CCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEE
Q 009256 452 --VMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 452 --~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
.+..+.++++..++++.++.++.|++.+|.+++.
T Consensus 135 Lf~g~~~il~p~~~~~~~~~~~v~~~~~~lG~~v~~ 170 (171)
T d2g5ca2 135 LYEGKKVILTPTKKTDKKRLKLVKRVWEDVGGVVEY 170 (171)
T ss_dssp TTTTCEEEECCCSSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 2345568899999999999999999999998875
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.66 E-value=3.9e-16 Score=137.57 Aligned_cols=148 Identities=12% Similarity=0.075 Sum_probs=119.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|+||.+|+..|.++| ++|.+|||++++++.+.++ ..+...++.+++.+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~-----------------------~~~~~~~~~~~v~~ 57 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE-----------------------LGVETSATLPELHS 57 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH-----------------------TCCEEESSCCCCCT
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh-----------------------cccccccccccccc
Confidence 48999999999999999998887 9999999999988876442 12455666678899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecCCCCcH
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTERTSA 466 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~~~t~~ 466 (539)
||+||+|++ +.....+++++ .+.+.+++|..++.+.+.+++.+....+++..+|+.|...+..+. ++.+...++
T Consensus 58 ~Div~lavk--P~~~~~v~~~l---~~~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn~p~~~~~g~t~~~~~~~~~~ 132 (152)
T d1yqga2 58 DDVLILAVK--PQDMEAACKNI---RTNGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSE 132 (152)
T ss_dssp TSEEEECSC--HHHHHHHHTTC---CCTTCEEEECCTTCCHHHHHHHTTSCCCEEEEECCGGGGGTCEEEEEECCTTSCH
T ss_pred cceEEEecC--HHHHHHhHHHH---hhcccEEeecccCCCHHHHHHHhCcCcceEeecccchhHhcCCcEEEEeCCCCCH
Confidence 999999997 44444554443 345778899999999999999887777899999999988887666 446777789
Q ss_pred HHHHHHHHHHHHcCceeE
Q 009256 467 QVILDLMTVGKIIKKVPV 484 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~~v 484 (539)
+..+.++++|..+|+..+
T Consensus 133 ~~~~~v~~l~~~~G~~~~ 150 (152)
T d1yqga2 133 TDRRIADRIMKSVGLTVW 150 (152)
T ss_dssp HHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhCCCEEE
Confidence 999999999999997653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.64 E-value=4.8e-16 Score=138.53 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=110.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
|+||+|||+|.||++||++|+++||+|.+||+++++.+.+.. . ......+. +.+.
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~-----------~-------------~~~~~~~~~e~~~ 56 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVA-----------A-------------GASAARSARDAVQ 56 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHH-----------T-------------TCEECSSHHHHHT
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhh-----------h-------------hccccchhhhhcc
Confidence 578999999999999999999999999999999988776532 1 12223334 7789
Q ss_pred CcCEEEEcccCChhHHHHHH--HHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeee
Q 009256 387 DVDMVIEAVIESVPLKQKIF--SELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEI 458 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~--~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei 458 (539)
.+|+|+.|+|.+......+. ..+.+.+.++.++++.++..+-. ++.+.+. ..-+++..+....| ..+++.-+
T Consensus 57 ~~diii~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~ 136 (162)
T d3cuma2 57 GADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFM 136 (162)
T ss_dssp SCSEEEECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEE
T ss_pred ccCeeeecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEE
Confidence 99999999997766554332 23677888888888655554432 3333332 23355555444433 34456666
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeEEEc
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPVVVG 487 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v~v~ 487 (539)
+.| +++++++++++++.+|+.+++++
T Consensus 137 ~gG---~~~~~~~~~~il~~~~~~v~~~G 162 (162)
T d3cuma2 137 VGG---DAEALEKARPLFEAMGRNIFHAG 162 (162)
T ss_dssp EES---CHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ecC---CHHHHHHHHHHHHHHcCccEECc
Confidence 776 78999999999999999998875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.63 E-value=8.4e-16 Score=135.31 Aligned_cols=145 Identities=13% Similarity=0.085 Sum_probs=116.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|+||.+|+..|.++|++|++|++++++.+.+.+.. .+....+. +.+++
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~-----------------------g~~~~~~~~~~~~~ 57 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-----------------------ALPYAMSHQDLIDQ 57 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-----------------------TCCBCSSHHHHHHT
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc-----------------------ceeeechhhhhhhc
Confidence 4799999999999999999999999999999998877664321 23344555 66889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCCCCeee-eecCCCCcH
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHVMPLLE-IVRTERTSA 466 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~~~~ve-i~~~~~t~~ 466 (539)
||+||.|++ ++...+ +.+.+.++.+++|..+++.++++...+....+++..+|..|...+.... +..+..+++
T Consensus 58 ~dvIilavk--p~~~~~----vl~~l~~~~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~~~~v~~g~~~~~~~~~~~~ 131 (152)
T d2ahra2 58 VDLVILGIK--PQLFET----VLKPLHFKQPIISMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQ 131 (152)
T ss_dssp CSEEEECSC--GGGHHH----HHTTSCCCSCEEECCTTCCHHHHHHHHCTTSCEEEEECCGGGGGTCEEEEEEECTTCCH
T ss_pred cceeeeecc--hHhHHH----HhhhcccceeEecccccccHHHHHhhhcccccchhhccchhhhcCccceEEEeCCCCCH
Confidence 999999996 333334 4455678888999999999999988887667788999877776654444 556778899
Q ss_pred HHHHHHHHHHHHcCce
Q 009256 467 QVILDLMTVGKIIKKV 482 (539)
Q Consensus 467 e~~~~~~~l~~~lg~~ 482 (539)
+..+.++++|+.+|+.
T Consensus 132 ~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 132 ELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHhCCCE
Confidence 9999999999999965
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=9.6e-16 Score=135.08 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=109.2
Q ss_pred CCCCCCcceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 302 GLKPRGVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 302 ~~~~~~~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
+.+...|+||+||| +|.||++||.+|.++||+|++||++++....
T Consensus 3 ~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~---------------------------------- 48 (152)
T d2pv7a2 3 KTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE---------------------------------- 48 (152)
T ss_dssp CCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH----------------------------------
T ss_pred cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc----------------------------------
Confidence 44567789999999 8999999999999999999999998754222
Q ss_pred CccCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh--HHHhhccCCCCcEEEeccCCCCCCC----C
Q 009256 381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL--NIVGEKTSSQDRIIGAHFFSPAHVM----P 454 (539)
Q Consensus 381 ~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~--~~i~~~~~~~~r~vg~h~~~p~~~~----~ 454 (539)
+.+.++|+++.++| ......++.++.+.+++++++++.+|..+. ..+.+. .+.++++.||...|... +
T Consensus 49 --~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~--~~~~~v~~hP~~Gp~~~~~~g~ 122 (152)
T d2pv7a2 49 --SILANADVVIVSVP--INLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEV--HTGAVLGLHPMFGADIASMAKQ 122 (152)
T ss_dssp --HHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH--CSSEEEEEEECSCTTCSCCTTC
T ss_pred --hhhhhccccccccc--hhhheeeeecccccccCCceEEEecccCHHHHHHHHHH--ccCCEEEecccCCCcccccCCc
Confidence 22568999999998 455668889999999999999877665432 233333 35589999998777443 3
Q ss_pred eeeeecCCCCcHHHHHHHHHHHHHcCceeEE
Q 009256 455 LLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 455 ~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
.+.++++ .+++.++++.++++.+|.+++.
T Consensus 123 ~~v~~~g--~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 123 VVVRCDG--RFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp EEEEEEE--ECGGGTHHHHHHHHHTTCEEEE
T ss_pred EEEEecC--CCHHHHHHHHHHHHHhCCEEEe
Confidence 4444444 3667899999999999999875
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=9.2e-16 Score=143.57 Aligned_cols=199 Identities=14% Similarity=0.125 Sum_probs=135.7
Q ss_pred HHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcceEEEEcCCC--CcHHHHH------HHHHCCCeEEEEeCChHHH-HHH
Q 009256 277 DTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGL--MGSGIAT------AHILNNIYVVLKEVNSEYL-LKG 347 (539)
Q Consensus 277 ~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~kI~iIG~G~--mG~~iA~------~l~~~G~~V~~~d~~~~~~-~~~ 347 (539)
.++..|+..|..-....+..+.+. .....++.++|+|+ ||..++. +|++.|+.|++.|.++++. +.+
T Consensus 13 ~~~a~gi~~f~~~~~~~~~~~~~~----~a~~~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~ 88 (242)
T d2b0ja2 13 THAAAGITNFMRACEVAKEVGKPE----IALTHSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAH 88 (242)
T ss_dssp HHHHHSSCCCHHHHHHHHHHTCGG----GGGCCHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHH
T ss_pred chhhhccHHHHHHHhhhccCCCCc----cceeeeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHH
Confidence 345556666654443333222222 12245688999997 8988887 7999999999999998764 444
Q ss_pred HHH----HHHHHHhhH----hcCC---------CCHHHHHHHhhcccccCCc-cCCCCcCEEEEcccCChhHHHHHHHHH
Q 009256 348 IKT----IEANVRGLV----TRGK---------LTQDKANNALKMLKGVLDY-SEFKDVDMVIEAVIESVPLKQKIFSEL 409 (539)
Q Consensus 348 ~~~----i~~~~~~~~----~~~~---------~~~~~~~~~~~~i~~~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l 409 (539)
.+. ++..+...+ +... +++++ ..+++++|. +++++||+||+|+|+. +.++.++++|
T Consensus 89 ~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe-----~Gv~v~~d~~Eav~~ADiII~~vP~~-~~v~~Vi~~I 162 (242)
T d2b0ja2 89 LSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPED-----VGLKVTSDDREAVEGADIVITWLPKG-NKQPDIIKKF 162 (242)
T ss_dssp HTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGG-----GTCEEESCHHHHHTTCSEEEECCTTC-TTHHHHHHHH
T ss_pred hcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHH-----CCCEEECCHHHHHhcCCeEEEeeecH-HHHHHHHHHH
Confidence 431 233333322 2222 12211 235666777 8899999999999955 5677888999
Q ss_pred HHhCCCCeEEEecCCCCCh--HHHhhccC-CCCcEEEeccCCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEEE
Q 009256 410 EKACPPHCILATNTSTIDL--NIVGEKTS-SQDRIIGAHFFSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVVV 486 (539)
Q Consensus 410 ~~~~~~~~ii~s~ts~~~~--~~i~~~~~-~~~r~vg~h~~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~v 486 (539)
.++++++++|++.+|..+. ..+...+. ...++++.||+.+|.......++. ..+++|.+++++++++.+|+.++++
T Consensus 163 ~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe~~g~~li~~-~~aseE~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 163 ADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCVPEMKGQVYIAE-GYASEEAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp GGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTTTCCCEEEEE-SSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred HhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEECCCccCcCccccceEEec-CCCCHHHHHHHHHHHHHHCCCeEeC
Confidence 9999999998765554332 24544454 456899999999887655554443 3579999999999999999998875
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.43 E-value=1.7e-14 Score=130.06 Aligned_cols=155 Identities=10% Similarity=0.001 Sum_probs=103.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
.+|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.- .+.... .......+. +.+.+
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~-------~~~~~~---------~~a~~~~~~~~~~~~ 66 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE-------AKGTKV---------LGAHSLEEMVSKLKK 66 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT-------TTTSSC---------EECSSHHHHHHHBCS
T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhc-------cccccc---------cchhhhhhhhhhhcc
Confidence 4799999999999999999999999999999999988774420 000000 001111122 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEeccCCCC---CCCCeeeeecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGAHFFSPA---HVMPLLEIVRT 461 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~h~~~p~---~~~~~vei~~~ 461 (539)
+|.+|.+++....+. .++..+.+.++++.+++..++..+.. +++..+. ..-+++..+....+ ..+. .-++.|
T Consensus 67 ~~~ii~~~~~~~~v~-~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG 144 (176)
T d2pgda2 67 PRRIILLVKAGQAVD-NFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGG 144 (176)
T ss_dssp SCEEEECSCTTHHHH-HHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEE
T ss_pred cceEEEecCchHHHH-HHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCC
Confidence 999999999776654 46788999999999888766554443 3333222 22344444332221 1122 224455
Q ss_pred CCCcHHHHHHHHHHHHHcCceeE
Q 009256 462 ERTSAQVILDLMTVGKIIKKVPV 484 (539)
Q Consensus 462 ~~t~~e~~~~~~~l~~~lg~~~v 484 (539)
+++.+++++++|+.++.++.
T Consensus 145 ---~~~~~~~~~~il~~~~~kv~ 164 (176)
T d2pgda2 145 ---NKEAWPHIKAIFQGIAAKVG 164 (176)
T ss_dssp ---CTTTHHHHHHHHHHHSCBCT
T ss_pred ---CHHHHHHHHHHHHHHhcccC
Confidence 67899999999999998753
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.38 E-value=3.7e-13 Score=118.64 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=102.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVD 389 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aD 389 (539)
||||||+|.||.+||.+|+++|+.| +|++++++.+...+.. .......+.+.++|
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 56 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEF------------------------GSEAVPLERVAEAR 56 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHH------------------------CCEECCGGGGGGCS
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHc------------------------CCccccccccccee
Confidence 7999999999999999999998865 6788877766543321 11223346778899
Q ss_pred EEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccCCCCcEEEeccCCCC--------CCCCeeeee
Q 009256 390 MVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTSSQDRIIGAHFFSPA--------HVMPLLEIV 459 (539)
Q Consensus 390 lVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~~~~r~vg~h~~~p~--------~~~~~vei~ 459 (539)
++|.++|.+.++. .....+.+...++.+++..++..+.. ++.+.+... +.+|.+.| ..+.+.-++
T Consensus 57 ~~i~~~~~~~~v~-~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~----gi~~ldapVsGg~~~A~~G~L~~~v 131 (156)
T d2cvza2 57 VIFTCLPTTREVY-EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREK----GVTYLDAPVSGGTSGAEAGTLTVML 131 (156)
T ss_dssp EEEECCSSHHHHH-HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT----TEEEEECCEESHHHHHHHTCEEEEE
T ss_pred EEEecccchhhhh-hhhccccccccccccccccccCCHHHHHHHHHHHHHc----CCeEEeccccCchhhhccCCEEEEE
Confidence 9999999776654 44577888888999887655443322 444444321 34554444 345667677
Q ss_pred cCCCCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 460 RTERTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 460 ~~~~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
.| +++.++++++++ .+++++++++.
T Consensus 132 gG---~~~~~~~~~p~L-~~~~~v~~~GP 156 (156)
T d2cvza2 132 GG---PEEAVERVRPFL-AYAKKVVHVGP 156 (156)
T ss_dssp ES---CHHHHHHHGGGC-TTEEEEEEEES
T ss_pred eC---CHHHHHHHHHHH-HhcCcCEEeCc
Confidence 77 889999999999 59999998863
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.37 E-value=6.6e-14 Score=123.14 Aligned_cols=142 Identities=8% Similarity=-0.071 Sum_probs=93.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCcCE
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDVDM 390 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~aDl 390 (539)
|+|||+|+||.+|+..|.+.++.+.+|+|++++++.+.+.. ...+.+..+.++.+|+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~Di 58 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVY-----------------------GGKAATLEKHPELNGV 58 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHT-----------------------CCCCCSSCCCCC---C
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc-----------------------cccccchhhhhccCcE
Confidence 79999999999999998765555579999999988875421 1223334477899999
Q ss_pred EEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHhhccCCCCcEEEeccCCCCCC--------CCeeeeecCC
Q 009256 391 VIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVGEKTSSQDRIIGAHFFSPAHV--------MPLLEIVRTE 462 (539)
Q Consensus 391 Vi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~~~~~~~~r~vg~h~~~p~~~--------~~~vei~~~~ 462 (539)
||.|+|++. ..+++.++ ..++.++++.+++.+...+... ...+.||..++.. ...+-.+.+
T Consensus 59 Vil~v~d~~--i~~v~~~l---~~~~~ivi~~s~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 127 (153)
T d2i76a2 59 VFVIVPDRY--IKTVANHL---NLGDAVLVHCSGFLSSEIFKKS-----GRASIHPNFSFSSLEKALEMKDQIVFGLEG- 127 (153)
T ss_dssp EEECSCTTT--HHHHHTTT---CCSSCCEEECCSSSCGGGGCSS-----SEEEEEECSCC--CTTGGGCGGGCCEEECC-
T ss_pred EEEeccchh--hhHHHhhh---cccceeeeecccchhhhhhhhh-----ccccceeeeecccccchhhhccCcEEEEeC-
Confidence 999999653 34444433 2467888888877776654332 3346676543321 112223333
Q ss_pred CCcHHHHHHHHHHHHHcCceeEEEcC
Q 009256 463 RTSAQVILDLMTVGKIIKKVPVVVGN 488 (539)
Q Consensus 463 ~t~~e~~~~~~~l~~~lg~~~v~v~~ 488 (539)
+++.++.++++++.+|.+++++.+
T Consensus 128 --d~~~~~~~~~l~~~lG~~~~~i~~ 151 (153)
T d2i76a2 128 --DERGLPIVKKIAEEISGKYFVIPS 151 (153)
T ss_dssp --CTTTHHHHHHHHHHHCSCEEECCG
T ss_pred --CHHHHHHHHHHHHHHCCcEEEeCC
Confidence 678999999999999999998854
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.30 E-value=6.5e-13 Score=116.52 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=94.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.+||..|+++||+|++||+++......... ......+. +.+++
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~------------------------~~~~~~~~~e~~~~ 56 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERAR------------------------TVGVTETSEEDVYS 56 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH------------------------HHTCEECCHHHHHT
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh------------------------cccccccHHHHHhh
Confidence 479999999999999999999999999999887765544221 11122333 67899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCCCCcEEEeccCCCCCC--CCeeeeecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSSQDRIIGAHFFSPAHV--MPLLEIVRTER 463 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~~~r~vg~h~~~p~~~--~~~vei~~~~~ 463 (539)
||+||.|+|.+.. ..+..++....+ .++++.++..+ ...+++.+.. .+++..+.+.++.. ....-++.|+.
T Consensus 57 ~diIi~~v~~~~~--~~~~~~~~~~~~--~~~id~st~~p~~~~~l~~~~~~-~~~~d~~v~g~~~~~~~~~~~~~~G~~ 131 (152)
T d1i36a2 57 CPVVISAVTPGVA--LGAARRAGRHVR--GIYVDINNISPETVRMASSLIEK-GGFVDAAIMGSVRRKGADIRIIASGRD 131 (152)
T ss_dssp SSEEEECSCGGGH--HHHHHHHHTTCC--SEEEECSCCCHHHHHHHHHHCSS-SEEEEEEECSCHHHHGGGCEEEEESTT
T ss_pred cCeEEEEecCchH--HHHHHhhcccCC--ceeeccCcCCHHHHHHHHHHHhc-cCCCcccccCCcccccCCcEEEEECCC
Confidence 9999999996653 345555665543 34444433322 3456655543 35777666555421 12223455543
Q ss_pred CcHHHHHHHHHHHHHcCceeEEEcCcc
Q 009256 464 TSAQVILDLMTVGKIIKKVPVVVGNCT 490 (539)
Q Consensus 464 t~~e~~~~~~~l~~~lg~~~v~v~~~~ 490 (539)
.+.++ .++.+|..+.++++.|
T Consensus 132 --~~~~~----~l~~~g~~i~~~G~~P 152 (152)
T d1i36a2 132 --AEEFM----KLNRYGLNIEVRGREP 152 (152)
T ss_dssp --HHHHH----GGGGGTCEEEECSSST
T ss_pred --HHHHH----HHHHcCCeeeEcCCCC
Confidence 34444 3678899998888765
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.30 E-value=2.5e-12 Score=115.80 Aligned_cols=155 Identities=14% Similarity=0.075 Sum_probs=103.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC---c-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD---Y-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~-~~ 384 (539)
+||||||+|.||.+||++|+++||+|++|||++++.+.+.+. +...... .......+ . ..
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~ 65 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA-----------NASAPFA-----GNLKAFETMEAFAAS 65 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-----------TTTSTTG-----GGEEECSCHHHHHHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-----------CCccccc-----cchhhhhhhhHHHHh
Confidence 379999999999999999999999999999999998887542 1100000 01111111 1 34
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhcc-CCCCcEEEeccCCCC---CCCCeeee
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKT-SSQDRIIGAHFFSPA---HVMPLLEI 458 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~-~~~~r~vg~h~~~p~---~~~~~vei 458 (539)
+..++.++++++....+. .++..+...+.++.+++..++..+.. .++..+ ...-.++..+.+..+ ..+. ..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~m 143 (178)
T d1pgja2 66 LKKPRKALILVQAGAATD-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFF 143 (178)
T ss_dssp BCSSCEEEECCCCSHHHH-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEE
T ss_pred cccceEEEEeecCcchhh-hhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEE
Confidence 567888888888666544 55677888888998887655554432 333333 233456665544333 1222 235
Q ss_pred ecCCCCcHHHHHHHHHHHHHcCceeE
Q 009256 459 VRTERTSAQVILDLMTVGKIIKKVPV 484 (539)
Q Consensus 459 ~~~~~t~~e~~~~~~~l~~~lg~~~v 484 (539)
+.| +++.+++++++++.+++++.
T Consensus 144 vgG---~~~~~~~v~pil~~~~~~~~ 166 (178)
T d1pgja2 144 PGG---TLSVWEEIRPIVEAAAAKAD 166 (178)
T ss_dssp EEE---CHHHHHHHHHHHHHHSCBCT
T ss_pred eeC---CHHHHHHHHHHHHHHhcccc
Confidence 556 78999999999999998876
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.22 E-value=8.4e-11 Score=107.82 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=97.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||+|.+|.++|..|+++||+|++||.|++.++.+.+.. +..+...+. ......++..+++. +
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~--------~~~~~~~~~~~~~~~~ 72 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQ--------QGRQTGRLSGTTDFKK 72 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHH--------HHHHTTCEEEESCHHH
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhh--------hhhcccccccCCCHHH
Confidence 4799999999999999999999999999999999988865321 000000000 01111456677777 6
Q ss_pred CCCCcCEEEEcccCC--------hhHHHHHHHHHHH---hCCCCeEEEecCCCCChH--HHh-----hcc--CCCCc-EE
Q 009256 384 EFKDVDMVIEAVIES--------VPLKQKIFSELEK---ACPPHCILATNTSTIDLN--IVG-----EKT--SSQDR-II 442 (539)
Q Consensus 384 ~~~~aDlVi~avpe~--------~~~~~~~~~~l~~---~~~~~~ii~s~ts~~~~~--~i~-----~~~--~~~~r-~v 442 (539)
++.+||+++.|+|.. ......+...+.. ...++.+|+..|+..+-. .+. ... ..... .+
T Consensus 73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~ 152 (202)
T d1mv8a2 73 AVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGV 152 (202)
T ss_dssp HHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEE
T ss_pred HHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccc
Confidence 789999999999863 3334455554443 445666665444333322 111 100 00111 12
Q ss_pred Eecc------------CCCCCCCCeeeeecCCCCcHHHHHHHHHHHHHcCceeEE
Q 009256 443 GAHF------------FSPAHVMPLLEIVRTERTSAQVILDLMTVGKIIKKVPVV 485 (539)
Q Consensus 443 g~h~------------~~p~~~~~~vei~~~~~t~~e~~~~~~~l~~~lg~~~v~ 485 (539)
...| .+|++. |+++ .+++..+.++++++.+...++.
T Consensus 153 ~~~PE~~~~G~a~~d~~~~~~i-----ViG~--~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 153 GTNPEFLRESTAIKDYDFPPMT-----VIGE--LDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp EECCCCCCTTSHHHHHHSCSCE-----EEEE--SSHHHHHHHHHHHTTSSSCEEE
T ss_pred hhhhhhhcccchhhhhcCCCeE-----EEEe--CCHHHHHHHHHHHHhcCCCeEe
Confidence 2211 223322 4444 3789999999999998776554
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.16 E-value=2.8e-12 Score=116.39 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=81.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
+.|+||+|||+|.||.++|..|+++||+|++|+|+++.++.+.+..++. .++..-.+. .++.+++++ ++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~--~yl~~~~l~--------~~i~~t~~l~~a 74 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENV--LFLKGVQLA--------SNITFTSDVEKA 74 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCT--TTSTTCBCC--------TTEEEESCHHHH
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccc--ccccccccc--------cccccchhhhhc
Confidence 3578999999999999999999999999999999999888765431100 011111111 467788888 77
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHh-----CCCCeEEEecCCCCCh
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKA-----CPPHCILATNTSTIDL 428 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~-----~~~~~ii~s~ts~~~~ 428 (539)
+++||+||.++| ....+.+++++.++ .+++.++++.+.++..
T Consensus 75 ~~~ad~iiiavP--s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~ 121 (189)
T d1n1ea2 75 YNGAEIILFVIP--TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER 121 (189)
T ss_dssp HTTCSCEEECSC--HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred cCCCCEEEEcCc--HHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCcc
Confidence 899999999999 66677888776543 3456667777777653
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.13 E-value=9e-11 Score=105.65 Aligned_cols=103 Identities=16% Similarity=0.097 Sum_probs=74.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
+||+|||+|.||.++|..|+++||+|++||++++..+...+... ......... ........+++. +.+++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~e~~~~ 72 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA----IIAEGPGLA-----GTAHPDLLTSDIGLAVKD 72 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS----EEEESSSCC-----EEECCSEEESCHHHHHTT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC----Cchhhhhhh-----hhhhhhhhhhhhHhHhcC
Confidence 58999999999999999999999999999999998877643210 000000000 000112234455 67899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEec
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATN 422 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ 422 (539)
||+||+++|... ...+++++.+++.++++|+..
T Consensus 73 aD~iii~v~~~~--~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 73 ADVILIVVPAIH--HASIAANIASYISEGQLIILN 105 (184)
T ss_dssp CSEEEECSCGGG--HHHHHHHHGGGCCTTCEEEES
T ss_pred CCEEEEEEchhH--HHHHHHHhhhccCCCCEEEEe
Confidence 999999998544 678999999999999987643
|
| >d1f0ya1 a.100.1.3 (A:204-302) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=1.3e-11 Score=99.56 Aligned_cols=49 Identities=37% Similarity=0.517 Sum_probs=46.3
Q ss_pred cchhhcchHHHHHHHHHHHHcCC-CHHHHHHHH-HhCCCCcchhhccccCC
Q 009256 491 GFAVNRAFFPYSQSARLLVSLGV-DVFRIDSAI-RSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 491 g~v~nrl~~~~~~Ea~~l~~~G~-~~~~id~a~-~~~g~~~Gpf~~~d~~~ 539 (539)
||++||++.++++||+.++++|+ ++++||.++ .++|+|+|||+++|.++
T Consensus 1 GFi~NRil~~~~~ea~~ll~eG~a~~~~iD~~~~~~~G~p~Gpf~~~D~vG 51 (99)
T d1f0ya1 1 GFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 51 (99)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSSCHHHHHHHHC
T ss_pred CeehHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccCCCCchHHHHHhhc
Confidence 89999999999999999999996 999999999 78999999999999753
|
| >d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.09 E-value=2e-11 Score=102.47 Aligned_cols=49 Identities=45% Similarity=0.715 Sum_probs=46.7
Q ss_pred cchhhcchHHHHHHHHHHHHcCCCHHHHHHHHHhCCCCcchhhccccCC
Q 009256 491 GFAVNRAFFPYSQSARLLVSLGVDVFRIDSAIRSFGLPIGPFQEGGCWS 539 (539)
Q Consensus 491 g~v~nrl~~~~~~Ea~~l~~~G~~~~~id~a~~~~g~~~Gpf~~~d~~~ 539 (539)
||++||++.++++||+.++++|+++++||++++.+|+|+|||+++|.++
T Consensus 1 GFi~NRi~~~~~~ea~~ll~eG~~~~~ID~a~~~~G~p~Gpf~l~D~vG 49 (124)
T d1wdka1 1 GFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYLMDVVG 49 (124)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSSCHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhccCCCCHHHHHHhcc
Confidence 8999999999999999999999999999999988999999999999764
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.02 E-value=4.5e-11 Score=107.58 Aligned_cols=103 Identities=16% Similarity=0.083 Sum_probs=72.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC--hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN--SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
+||+|||+|.||.++|..|+++|++|++|.|+ ++.++...+...+ ...... +. ...+..+++. +++
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~---~~~~~~-~~-------~~~i~~~~~~~~~~ 69 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREH---PRLGVK-LN-------GVEIFWPEQLEKCL 69 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCB---TTTTBC-CC-------SEEEECGGGHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhh---hhhcch-hc-------cccccccccHHHHH
Confidence 48999999999999999999999999999884 4444443221000 000000 00 0235556666 678
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+++|+||.++| ....+.+++++.++++++.+++. +++
T Consensus 70 ~~ad~Ii~avp--s~~~~~~~~~l~~~l~~~~ii~~-tkg 106 (180)
T d1txga2 70 ENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLI-SKG 106 (180)
T ss_dssp TTCSEEEECSC--GGGHHHHHHHHTTTCCSCEEEEC-CCS
T ss_pred hccchhhcccc--hhhhHHHHHhhccccccceeccc-ccC
Confidence 99999999999 56688999999999988776654 443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.78 E-value=5.1e-09 Score=90.42 Aligned_cols=122 Identities=18% Similarity=0.258 Sum_probs=77.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..++..|+ +++++|++++.++.....+.+. ...... .....+.++++++
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~----~~~~~~---------~~~~~~~d~~~l~ 73 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHG----KVFAPK---------PVDIWHGDYDDCR 73 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH----TTSSSS---------CCEEEECCGGGTT
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhC----ccccCC---------CeEEEECCHHHhc
Confidence 489999999999999999999886 8999999998866543333221 100000 1122355779999
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-H-HHhhccC-CCCcEEEe
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-N-IVGEKTS-SQDRIIGA 444 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~-~i~~~~~-~~~r~vg~ 444 (539)
+||+||.+... +..+.+++.++|.++.++.. ++..|....+ . -+++... .+.|++|+
T Consensus 74 daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~-~ivvtNPvd~~t~~~~k~sg~p~~rViG~ 147 (148)
T d1ldna1 74 DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL-FLVATNPVDILTYATWKFSGLPHERVIGS 147 (148)
T ss_dssp TCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSE-EEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred cceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCce-EEEecCccHHHHHHHHHHHCcChhheecC
Confidence 99999987632 34566677778888876654 4333332221 2 2223332 34677774
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.78 E-value=4.6e-09 Score=90.38 Aligned_cols=121 Identities=19% Similarity=0.212 Sum_probs=76.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..++..| .+|+++|+++++++.....+++. ....+ .....+.++++++
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a---~~~~~-----------~~~~~~~d~~~~~ 71 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA---QAFTA-----------PKKIYSGEYSDCK 71 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG---GGGSC-----------CCEEEECCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcc---ccccC-----------CceEeeccHHHhc
Confidence 48999999999999999999988 49999999998765433222111 01111 1234466788899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccCC-CCcEEEe
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTSS-QDRIIGA 444 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~~-~~r~vg~ 444 (539)
+||+||.+... +..+.+++..++.++.++. +++..|.... ...++..... +.|++|+
T Consensus 72 ~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~a-ivivvtNPvdv~t~~~~k~sg~p~~rViG~ 145 (146)
T d1ez4a1 72 DADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDG-IFLVAANPVDILTYATWKFSGFPKERVIGS 145 (146)
T ss_dssp TCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCS-EEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCc-EEEEeCCccHHHHHHHHHHHCcCccceecC
Confidence 99999998632 2335566667788776554 4443332222 1223333333 4577774
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.72 E-value=1.6e-08 Score=86.75 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=77.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..++..|. +++++|++++..+.....+....... . ....+..++++++++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~---~---------~~~~i~~~~~~~~~~ 68 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVG---L---------FDTKVTGSNDYADTA 68 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHH---T---------CCCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchh---c---------ccceEEecCCHHHhc
Confidence 489999999999999999999984 99999999987665432221111000 0 012355567778999
Q ss_pred CcCEEEEccc--C------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH----hhccC-CCCcEEEe
Q 009256 387 DVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTSTIDLNIV----GEKTS-SQDRIIGA 444 (539)
Q Consensus 387 ~aDlVi~avp--e------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i----~~~~~-~~~r~vg~ 444 (539)
+||+|+.+.. . +..+.+++.+.+.++.++ ++++..|. |+..+ .+... .+.|++|+
T Consensus 69 dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~-aivivvtN--Pvd~~~~~~~~~sg~p~~rviG~ 142 (142)
T d1guza1 69 NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKN-PIIIVVSN--PLDIMTHVAWVRSGLPKERVIGM 142 (142)
T ss_dssp TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSS-CEEEECCS--SHHHHHHHHHHHHCSCGGGEEEE
T ss_pred CCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCC-eEEEEecC--ChHHHHHHHHHHhCCChHhEeeC
Confidence 9999999862 1 334556666778888754 45543332 33322 22222 24577774
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.72 E-value=2.6e-08 Score=85.10 Aligned_cols=123 Identities=18% Similarity=0.313 Sum_probs=78.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..++.+|. ++.++|++++.++.-...+++.... . .. ...+..+.++++++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~-~--~~---------~~~i~~~~d~~~~~ 68 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAG-I--DK---------YPKIVGGADYSLLK 68 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHT-T--TC---------CCEEEEESCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccc-c--CC---------CCccccCCCHHHhc
Confidence 489999999999999999998885 8999999998866543333322110 0 00 02455567789999
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCChH--HHhhccC-CCCcEEEe
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTIDLN--IVGEKTS-SQDRIIGA 444 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~--~i~~~~~-~~~r~vg~ 444 (539)
+||+||.+... +....+++..++.++. |+++++..|....+- .+++... .+.|++|+
T Consensus 69 ~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~ 142 (142)
T d1ojua1 69 GSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNPMDVMTYIMWKESGKPRNEVFGM 142 (142)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred cccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhC-CCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence 99999988731 2334445555666665 455665445433321 2233333 35677774
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=98.72 E-value=1.3e-08 Score=87.00 Aligned_cols=122 Identities=25% Similarity=0.331 Sum_probs=78.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|+++|..++.+|+ +++++|++++.++.-...+++.. .-.+ ...+..++++++++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~---~~~~----------~~~i~~~~~~~~~~ 68 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGS---SFYP----------TVSIDGSDDPEICR 68 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTG---GGST----------TCEEEEESCGGGGT
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhcc---ccCC----------CceeecCCCHHHhh
Confidence 589999999999999999999987 89999999987654333332210 0000 02344566778899
Q ss_pred CcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-HH-HhhccC-CCCcEEEe
Q 009256 387 DVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTIDL-NI-VGEKTS-SQDRIIGA 444 (539)
Q Consensus 387 ~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~-i~~~~~-~~~r~vg~ 444 (539)
+||+||.+.. .+..+.+++..++.++.+... ++..|....+ .. +++... .+.|++|+
T Consensus 69 daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai-~ivvtNPvDvmt~~~~~~sg~p~~rViG~ 142 (143)
T d1llda1 69 DADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAI-YMLITNPVDIATHVAQKLTGLPENQIFGS 142 (143)
T ss_dssp TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSE-EEECCSSHHHHHHHHHHHHTCCTTSEEEC
T ss_pred CCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeE-EEEeCCchHHHHHHHHHHHCCChhhccCC
Confidence 9999998862 144566666777888876554 4333332221 12 222222 34677774
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.71 E-value=2.2e-08 Score=90.79 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=68.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH----HHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI----EANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
+||+|||+|.+|.++|..|+ .||+|++||+|++.++.+.+.. +..++.+.+... ..+..+++. .
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~----------~~~~~~~~~~~ 69 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ----------LSIKATLDSKA 69 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSC----------CCEEEESCHHH
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhh----------hhhhccchhhh
Confidence 48999999999999998775 6999999999999988875421 112222222111 223334444 5
Q ss_pred CCCCcCEEEEcccCCh---------hHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 384 EFKDVDMVIEAVIESV---------PLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~---------~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+..++|+++.++|... .......+.+.... ++.+++. .|++++.
T Consensus 70 ~~~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~iii-~Stv~pg 122 (196)
T d1dlja2 70 AYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVN-SHATLII-KSTIPIG 122 (196)
T ss_dssp HHHHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHC-SSCEEEE-CSCCCTT
T ss_pred hhhccccccccCCccccccCCCcceeEEeehhhhhhhcc-cceeEEe-eeecCce
Confidence 5789999999998632 23344444555553 4455543 4444444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1.3e-09 Score=96.07 Aligned_cols=104 Identities=12% Similarity=-0.045 Sum_probs=73.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||+|||+|.||+.+|..|+++||+|++++|+++..+... ..+. ... ........++.+.+.++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~-----------~~~~-~~~----~~~~~~~~~~~~~~~~~ 64 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVN-----------LVET-DGS----IFNESLTANDPDFLATS 64 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEE-----------EECT-TSC----EEEEEEEESCHHHHHTC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhc-----------cccC-Ccc----ccccccccchhhhhccc
Confidence 5899999999999999999999999999999976433210 0000 000 00111122333667899
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHH
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNI 430 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~ 430 (539)
|+||.+++. .....+++.+.++++++++|++...++...+
T Consensus 65 D~iii~vka--~~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~ 104 (167)
T d1ks9a2 65 DLLLVTLKA--WQVSDAVKSLASTLPVTTPILLIHNGMGTIE 104 (167)
T ss_dssp SEEEECSCG--GGHHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred ceEEEeecc--cchHHHHHhhccccCcccEEeeccCcccHHH
Confidence 999999984 3456788899999999998888777766544
|
| >d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: HCDH C-domain-like domain: Fatty oxidation complex alpha subunit, C-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.67 E-value=4.6e-09 Score=83.07 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=44.2
Q ss_pred hhhcchHHHHHHHHHHHHcCC--CHHHHHHHH-HhCCCCc---chhhccccCC
Q 009256 493 AVNRAFFPYSQSARLLVSLGV--DVFRIDSAI-RSFGLPI---GPFQEGGCWS 539 (539)
Q Consensus 493 v~nrl~~~~~~Ea~~l~~~G~--~~~~id~a~-~~~g~~~---Gpf~~~d~~~ 539 (539)
|+||++++++|||.+++++|+ +++|||.++ .++|||+ |||+++|.++
T Consensus 7 IvnRll~~~~nEa~~~leeGia~~~~diD~~~~~g~GfP~~~gGp~~~~D~~G 59 (95)
T d1wdka2 7 IINWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFPLFRGGALRYIDSIG 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHTCCCGGGCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHccCChhhCcHHHHHHHHC
Confidence 889999999999999999996 899999999 8999999 9999999764
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=98.65 E-value=3e-08 Score=86.20 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=69.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|+++|..++..|+ ++.++|++++.++.....+++. ....+. .......++++++
T Consensus 21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~---~~~~~~----------~~~~~~~d~~~~~ 87 (160)
T d1i0za1 21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG---SLFLQT----------PKIVADKDYSVTA 87 (160)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT---GGGCCC----------SEEEECSSGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc---ccccCC----------CeEEeccchhhcc
Confidence 499999999999999999999998 9999999988765543333221 111110 2233456778999
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+||+||.+... +..+.+++..+|.++.++. +++..|.
T Consensus 88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~a-iiivvtN 138 (160)
T d1i0za1 88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC-IIIVVSN 138 (160)
T ss_dssp TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTC-EEEECSS
T ss_pred cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCc-EEEEeCC
Confidence 99999987621 3335556667788776554 4443343
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=98.62 E-value=3.1e-08 Score=84.67 Aligned_cols=103 Identities=14% Similarity=0.212 Sum_probs=69.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||+|||+|.+|.++|..++..+. ++.++|++++..+.....+..... .... ...+..+.+++++++
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~--~~~~----------~~~i~~~~d~~~~~~ 69 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASP--IEGF----------DVRVTGTNNYADTAN 69 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHH--HHTC----------CCCEEEESCGGGGTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccc--ccCC----------CCEEEecCcHHHhcC
Confidence 489999999999999999998876 999999999876654333221110 0000 023555678889999
Q ss_pred cCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 388 VDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 388 aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+|+||.+... +..+.+++..++.++.++. +++..|.
T Consensus 70 advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~a-ivivvtN 119 (142)
T d1uxja1 70 SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNA-VIIMVNN 119 (142)
T ss_dssp CSEEEECCSCC---------CHHHHHHHHHHHHHHHGGGCTTC-EEEECSS
T ss_pred CCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCc-eEEEeCC
Confidence 9999998732 2334456666777776554 4444343
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=98.60 E-value=4.7e-08 Score=83.79 Aligned_cols=121 Identities=19% Similarity=0.309 Sum_probs=74.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|+++|..++..|. +++++|+++++++.....+.+.. ...+. .....+.++++++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~---~~~~~----------~~~~~~~d~~~l~ 68 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAM---ANLEA----------HGNIVINDWAALA 68 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHG---GGSSS----------CCEEEESCGGGGT
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccc---cccCC----------ccceeccCHHHhc
Confidence 699999999999999999998875 89999999987665433332211 11110 1122356678899
Q ss_pred CcCEEEEcccC------------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-H-HHhhccC-CCCcEEE
Q 009256 387 DVDMVIEAVIE------------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-N-IVGEKTS-SQDRIIG 443 (539)
Q Consensus 387 ~aDlVi~avpe------------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~-~i~~~~~-~~~r~vg 443 (539)
+||+||.+... +..+.+++.+.+.++.+ +++++..|....+ . .+++... .+.|++|
T Consensus 69 ~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~k~sg~p~~rViG 145 (146)
T d1hyha1 69 DADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGF-HGVLVVISNPVDVITALFQHVTGFPAHKVIG 145 (146)
T ss_dssp TCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred cccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCC-CeEEEEecCcHHHHHHHHHHHhCCCccceeC
Confidence 99999988531 12334555566777664 5555544443322 1 2223333 2456766
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=6.7e-08 Score=82.34 Aligned_cols=100 Identities=22% Similarity=0.257 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|.++|..++.+|. ++.++|+++++++.....+..... . .. .....+.++++++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~--~-~~-----------~~~~~~~~~~~~~ 66 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTP--F-TR-----------RANIYAGDYADLK 66 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG--G-SC-----------CCEEEECCGGGGT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccc--c-cc-----------cccccCCcHHHhc
Confidence 489999999999999999998875 899999999876654333322110 0 01 1112245678899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+||+||.+... +..+.+++.+.+.++.+.. +++..|
T Consensus 67 ~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~a-ivivvt 116 (140)
T d1a5za1 67 GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDS-IVIVVT 116 (140)
T ss_dssp TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTC-EEEECS
T ss_pred CCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCc-EEEEeC
Confidence 99999998621 3445566667788887655 444333
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.56 E-value=7.1e-08 Score=83.58 Aligned_cols=126 Identities=21% Similarity=0.295 Sum_probs=78.3
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-c
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
++-+||+|||+|.+|.++|..++..++ +++++|++++.++.....+.+.... .... ..+..++++ +
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~-~~~~-----------~~~~~~~~~~~ 72 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV-VDTN-----------VSVRAEYSYEA 72 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH-TTCC-----------CCEEEECSHHH
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccc-cCCe-----------eEEeccCchhh
Confidence 345699999999999999999988886 8999999998776654444332111 1111 123334555 6
Q ss_pred CCCCcCEEEEcccC-------------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-H-HHhhccC-CCCcE
Q 009256 384 EFKDVDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-N-IVGEKTS-SQDRI 441 (539)
Q Consensus 384 ~~~~aDlVi~avpe-------------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~-~i~~~~~-~~~r~ 441 (539)
++++||+||.+... +..+.+++.+++.++.++. +++..|....+ . .+++... .+.|+
T Consensus 73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~a-iviivsNPvd~lt~~~~~~sg~p~~rV 151 (154)
T d1pzga1 73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKT-FIIVVTNPLDCMVKVMCEASGVPTNMI 151 (154)
T ss_dssp HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTC-EEEECCSSHHHHHHHHHHHHCCCGGGE
T ss_pred hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCc-EEEEeCCcHHHHHHHHHHHhCcChhcE
Confidence 78999999987721 1224556667788887655 44433433321 1 2223223 34577
Q ss_pred EEe
Q 009256 442 IGA 444 (539)
Q Consensus 442 vg~ 444 (539)
+|+
T Consensus 152 iG~ 154 (154)
T d1pzga1 152 CGM 154 (154)
T ss_dssp EEC
T ss_pred ecC
Confidence 774
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.49 E-value=1.3e-07 Score=80.82 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=63.2
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHH--HHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEY--LLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
+||+|||+ |.+|.++|..++..|. ++.++|++++. ++.....+.+.. ....... .-.+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~---~~~~~~~-------~~~~~~~~d~~ 70 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL---AGTRSDA-------NIYVESDENLR 70 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH---TTSCCCC-------EEEEEETTCGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcc---cccccCC-------ccccCCcchHH
Confidence 48999995 9999999999999985 99999998643 232222222211 0001000 00122344678
Q ss_pred CCCCcCEEEEccc--C------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 384 EFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 384 ~~~~aDlVi~avp--e------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
++++||+||.+.. . +..+.+++..++.++.+ +.+++
T Consensus 71 ~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iiv 120 (145)
T d1hyea1 71 IIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV 120 (145)
T ss_dssp GGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEE
T ss_pred HhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCC-CeEEE
Confidence 9999999999852 1 33345566667888875 45544
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.47 E-value=4.8e-08 Score=83.41 Aligned_cols=121 Identities=21% Similarity=0.323 Sum_probs=70.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|||+|.+|+++|..++..|+ +++++|++++.++....++.+ ... ... .....+.++++++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~----~~~--~~~--------~~~~~~~~~~~~~ 67 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH----GLP--FMG--------QMSLYAGDYSDVK 67 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTT----SCC--CTT--------CEEEC--CGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeecc----Ccc--cCC--------CeeEeeCcHHHhC
Confidence 489999999999999999999987 899999999865433222111 000 000 1112244678899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCC-hH-HHhhccCC-CCcEEEe
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTSTID-LN-IVGEKTSS-QDRIIGA 444 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~-~~-~i~~~~~~-~~r~vg~ 444 (539)
+||+|+.+... +..+.+++.+++.++.++. +++..|.... +. .+++.... +.|++|+
T Consensus 68 ~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~a-i~ivvtNPvdv~t~~~~k~sg~p~~rViG~ 141 (142)
T d1y6ja1 68 DCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG-VILVVSNPVDIITYMIQKWSGLPVGKVIGS 141 (142)
T ss_dssp TCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSC-EEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCc-eEEEecChHHHHHHHHHHHHCCCccceecC
Confidence 99999988521 3345556666777777655 4433333222 12 22333333 4577774
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.40 E-value=6e-07 Score=77.05 Aligned_cols=123 Identities=20% Similarity=0.328 Sum_probs=76.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
.||+|||+|.+|+++|..+...+. ++++||++++.++.....+.+... ..... ..+....+++++++
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~--~~~~~----------~~v~~~~~~~~~~~ 71 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNV--MAYSN----------CKVSGSNTYDDLAG 71 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHH--HHTCC----------CCEEEECCGGGGTT
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhcc--ccCCC----------cEEEecccccccCC
Confidence 489999999999999998888875 999999999877665444432211 00000 12333456789999
Q ss_pred cCEEEEcccC-------------------ChhHHHHHHHHHHHhCCCCeEEEecCCCCCh-HH-HhhccC-CCCcEEEe
Q 009256 388 VDMVIEAVIE-------------------SVPLKQKIFSELEKACPPHCILATNTSTIDL-NI-VGEKTS-SQDRIIGA 444 (539)
Q Consensus 388 aDlVi~avpe-------------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~-~~-i~~~~~-~~~r~vg~ 444 (539)
+|+||.+... +..+.+++..++.++.+ +++++..|....+ .. +++... .+.|++|+
T Consensus 72 advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aivivvtNPvD~~t~~~~~~sg~p~~rViG~ 149 (150)
T d1t2da1 72 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL 149 (150)
T ss_dssp CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchHHHHHHHHHHHCCCchheecc
Confidence 9999988631 11244555566777765 4555444433322 22 222222 35677774
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=1.6e-07 Score=81.42 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=67.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
.||+|||+|.+|.++|..+...|+ +++++|++++.++.....+++. ....+. .......++++++
T Consensus 20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~---~~~~~~----------~~~~~~~d~~~~~ 86 (159)
T d2ldxa1 20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHG---SLFLST----------PKIVFGKDYNVSA 86 (159)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHT---TTTCSC----------CEEEEESSGGGGT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCc---chhcCC----------CeEEeccchhhhc
Confidence 589999999999999999999987 8999999998766544333211 001110 1233456778899
Q ss_pred CcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 387 DVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 387 ~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
+||+||.+... +..+.+++..++.++.+ +.+++..|.
T Consensus 87 ~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p-~~ivivvtN 137 (159)
T d2ldxa1 87 NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIVVTN 137 (159)
T ss_dssp TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHST-TCEEEECSS
T ss_pred cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCC-CeEEEEeCC
Confidence 99999987621 23344444455666655 455544444
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=98.24 E-value=2.3e-06 Score=75.08 Aligned_cols=75 Identities=17% Similarity=0.194 Sum_probs=51.0
Q ss_pred ceEEEEcCCCCcHHHHH--HHHHC----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIAT--AHILN----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~--~l~~~----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|..|.+.+. .++.. +.+++++|+|+++++.......+...... .+ -++..++|.
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~----~~--------~~i~~~td~ 70 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG----AD--------LKFEKTMNL 70 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTT----CC--------CEEEEESCH
T ss_pred cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcC----CC--------eEEEEeCCh
Confidence 48999999999977543 24332 46999999999988765444333222111 11 245666777
Q ss_pred -cCCCCcCEEEEcc
Q 009256 383 -SEFKDVDMVIEAV 395 (539)
Q Consensus 383 -~~~~~aDlVi~av 395 (539)
+++++||+||.++
T Consensus 71 ~eaL~dad~Vv~~~ 84 (171)
T d1obba1 71 DDVIIDADFVINTA 84 (171)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhcccCCCeEeeec
Confidence 7899999999875
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.20 E-value=3.2e-07 Score=81.52 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=77.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+...|.+|++||+++.. .......++ +.+++
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------------------------------~~~~~~~~l~ell~~ 92 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------------------------------GPWRFTNSLEEALRE 92 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------------------------------SSSCCBSCSHHHHTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc------------------------------cceeeeechhhhhhc
Confidence 58999999999999999999999999999987531 112233455 67899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccCC-CCcEEEecc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSS-QDRIIGAHF 446 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~~-~~r~vg~h~ 446 (539)
||+|+.++|-..+.+.-+=.+..+.++++++++..+-+ +....+.+.+.. .-.-.++..
T Consensus 93 sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV 154 (181)
T d1qp8a1 93 ARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV 154 (181)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESC
T ss_pred cchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEec
Confidence 99999999987765544446677888999999865544 334455444432 223345553
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.17 E-value=3.6e-06 Score=71.53 Aligned_cols=104 Identities=13% Similarity=0.183 Sum_probs=64.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI--YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 385 (539)
.||+|||+ |.+|.++|..++..|+ +++++|+++.+.+.. .+ ........ ....+...++++++
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--Dl-------~~~~~~~~-----~~~~~~~~~~~~~~ 66 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--DL-------SHIETRAT-----VKGYLGPEQLPDCL 66 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--HH-------TTSSSSCE-----EEEEESGGGHHHHH
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--HH-------hhhhhhcC-----CCeEEcCCChHHHh
Confidence 38999995 9999999999999886 899999987543221 11 00000000 00112222234779
Q ss_pred CCcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 386 KDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 386 ~~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
++||+||.+.. .+....+++.+++.++.+ +++++..|....
T Consensus 67 ~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvD 121 (144)
T d1mlda1 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCP-DAMICIISNPVN 121 (144)
T ss_dssp TTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECSSCHH
T ss_pred CCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCC-CeEEEEecCchh
Confidence 99999998753 134456667777888855 455554454443
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=98.09 E-value=1e-05 Score=70.40 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=49.3
Q ss_pred ceEEEEcCCCCcHHHHH-HHHH-C----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIAT-AHIL-N----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~-~l~~-~----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.||+|||+|..|.+.+. .+.. . +-+|+++|+++++++...+........ .... -.+..++|.
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~d~ 71 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIRE-KAPD-----------IEFAATTDP 71 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHH-HCTT-----------SEEEEESCH
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHH-hCCC-----------cceEecCCh
Confidence 48999999999987543 3332 2 238999999999877544333222111 1100 245556676
Q ss_pred -cCCCCcCEEEEcc
Q 009256 383 -SEFKDVDMVIEAV 395 (539)
Q Consensus 383 -~~~~~aDlVi~av 395 (539)
+++++||+||.++
T Consensus 72 ~eal~~AD~Vvita 85 (167)
T d1u8xx1 72 EEAFTDVDFVMAHI 85 (167)
T ss_dssp HHHHSSCSEEEECC
T ss_pred hhccCCCCEEEECC
Confidence 8899999999987
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.05 E-value=1.9e-06 Score=76.93 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=40.1
Q ss_pred ceEEEE-cCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q 009256 309 RKVAVI-GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (539)
Q Consensus 309 ~kI~iI-G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~ 352 (539)
+||+|| |+|.||.++|..|+++||+|++|+|++++++.+.+++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~ 45 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR 45 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 479999 78999999999999999999999999999988877654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.03 E-value=8.5e-06 Score=68.89 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=63.3
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCC--eEEEEeCCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNI--YVVLKEVNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~--~V~~~d~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
.||+||| +|.+|.++|..+..+|+ ++.++|++. +..+.....+.+. ...... ..+ .+.+++
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~----~~~~~~---------~~i-~~~~~~ 66 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG----IAYDSN---------TRV-RQGGYE 66 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHH----HTTTCC---------CEE-EECCGG
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhc----ccccCC---------ceE-eeCCHH
Confidence 4899999 69999999999999987 899999753 2332222222221 111100 122 244678
Q ss_pred CCCCcCEEEEccc--C------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 384 EFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 384 ~~~~aDlVi~avp--e------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++++||+||.+.. . +..+.+++..+|.++.++ .+++..|..
T Consensus 67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~-~i~ivvtNP 121 (142)
T d1o6za1 67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLTTSNP 121 (142)
T ss_dssp GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEECCSS
T ss_pred HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCC-ceEEEecCh
Confidence 8999999998752 1 234555566667777654 455444433
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=98.01 E-value=1.2e-05 Score=69.69 Aligned_cols=73 Identities=19% Similarity=0.134 Sum_probs=48.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHH--C----CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHIL--N----NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~--~----G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
+||+|||+|..|.+++..... . +.+++++|+++++++...+ ..+ ...... ..+..+++.
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d-~~~---~~~~~~-----------~~~~~t~~~ 65 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD-FVK---RLVKDR-----------FKVLISDTF 65 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH-HHH---HHHTTS-----------SEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH-HHH---hhhccC-----------ceEEEecCc
Confidence 489999999999998865332 1 3589999999998764322 111 111111 223444444
Q ss_pred -cCCCCcCEEEEccc
Q 009256 383 -SEFKDVDMVIEAVI 396 (539)
Q Consensus 383 -~~~~~aDlVi~avp 396 (539)
+++++||+||.+..
T Consensus 66 ~~~l~~aDvVVita~ 80 (162)
T d1up7a1 66 EGAVVDAKYVIFQFR 80 (162)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred ccccCCCCEEEEecc
Confidence 88999999998863
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.99 E-value=7.8e-06 Score=68.48 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc--cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY--SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~ 386 (539)
+++.|+|+|.+|..+|..|.+.|++|+++|.|++.++.+.+. +... ..+..+-...+ ..+.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-----------~~~~------~~gd~~~~~~l~~a~i~ 63 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-----------ATHA------VIANATEENELLSLGIR 63 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-----------CSEE------EECCTTCTTHHHHHTGG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-----------CCcc------eeeecccchhhhccCCc
Confidence 468999999999999999999999999999999998876321 1000 00000000011 2367
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
+||.||.+++++.... .+...+.+..+...+++-
T Consensus 64 ~a~~vi~~~~~~~~~~-~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 64 NFEYVIVAIGANIQAS-TLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp GCSEEEECCCSCHHHH-HHHHHHHHHTTCSEEEEE
T ss_pred cccEEEEEcCchHHhH-HHHHHHHHHcCCCcEEee
Confidence 8999999998776532 223344555555555543
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.96 E-value=1e-05 Score=71.36 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHHhc---CCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 28 LAIPIVAGLKDKFEEATS---RDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~---d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
+|.++..++...|..++. ++.+.+. |.+. |+|+.. ...++ +.|..++.||...
T Consensus 22 I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS~------GG~v~~----------------gl~i~-d~i~~~~~~v~t~ 77 (179)
T d2cbya1 22 VNDEIANRLCAQILLLAAEDASKDISLY-INSP------GGSISA----------------GMAIY-DTMVLAPCDIATY 77 (179)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEEC------CBCHHH----------------HHHHH-HHHHHCSSCEEEE
T ss_pred ECHHHHHHHHHHHHHHhccCCCCeEEEE-eeCC------CCCHHH----------------HHHHH-HHHHhhccceeee
Confidence 788888888887655543 3344333 3432 333321 22455 6788999999999
Q ss_pred EcCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhh------------------cccccc--CHHHHHHH
Q 009256 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQ------------------RLPRLV--GLSKAIEM 162 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~v--G~~~a~~l 162 (539)
+.|.|.+.|.-+++++| .|++.++++|-+-+...|.. |... .+.+.- ....-.++
T Consensus 78 ~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~---G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~ 154 (179)
T d2cbya1 78 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVT---GSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEAD 154 (179)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred hhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 99999999999999999 89999999999877755442 2111 111111 23444566
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-....++|+||+++||||+|+..
T Consensus 155 ~~~d~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 155 SDRDRWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp HHTTCEEEHHHHHHHTSCSEECSC
T ss_pred hcCCceecHHHHHHcCCCcEEecC
Confidence 667888999999999999999864
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.96 E-value=2e-05 Score=68.79 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCcHHH--HHHHHHC----CCeEEEEeCChHHH--HHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 309 RKVAVIGGGLMGSGI--ATAHILN----NIYVVLKEVNSEYL--LKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 309 ~kI~iIG~G~mG~~i--A~~l~~~----G~~V~~~d~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
.||+|||+|..|.+. +..+... +-+++++|++++.. +.......... ...+ .+ -.+..++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~---~~~~-~~--------~~~~~~t 69 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMV---EKAG-VP--------IEIHLTL 69 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHH---HHTT-CC--------CEEEEES
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHH---HhcC-CC--------ceeeecC
Confidence 489999999988643 3333332 23999999998652 22211111111 1111 00 2344566
Q ss_pred Cc-cCCCCcCEEEEcccC----------------------------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 381 DY-SEFKDVDMVIEAVIE----------------------------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe----------------------------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
|. +++++||+||.+..- +....+++.+++.+++ |+++++..|..
T Consensus 70 d~~~al~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~-pda~~i~vtNP 148 (169)
T d1s6ya1 70 DRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELC-PDAWLINFTNP 148 (169)
T ss_dssp CHHHHHTTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred CchhhcCCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcC-CCeEEEEeCCh
Confidence 65 788999999999842 2233566777888887 45555544433
Q ss_pred CCh-HHHhhccCCCCcEEEe
Q 009256 426 IDL-NIVGEKTSSQDRIIGA 444 (539)
Q Consensus 426 ~~~-~~i~~~~~~~~r~vg~ 444 (539)
..+ +........+.+++|+
T Consensus 149 vdv~t~~~~k~~p~~kviGl 168 (169)
T d1s6ya1 149 AGMVTEAVLRYTKQEKVVGL 168 (169)
T ss_dssp HHHHHHHHHHHCCCCCEEEC
T ss_pred HHHHHHHHHHHCCCCCEEee
Confidence 332 2222223334577774
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=3.2e-06 Score=71.89 Aligned_cols=102 Identities=18% Similarity=0.239 Sum_probs=62.8
Q ss_pred ceEEEEc-CCCCcHHHHHHHHH-C--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIG-GGLMGSGIATAHIL-N--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~-~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
+||+||| +|.+|.++|..|+. . +.++.++|+++.. +.....+.+ ..... ....+..++++++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~-~g~a~Dl~h-------~~~~~------~~~~~~~~~~~~~ 66 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVDLSH-------IPTAV------KIKGFSGEDATPA 66 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTH-HHHHHHHHT-------SCSSC------EEEEECSSCCHHH
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccc-hhHHHHHHC-------Ccccc------CCcEEEcCCCccc
Confidence 4899999 59999999998864 3 4699999987532 221111111 00000 0012333455688
Q ss_pred CCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 385 FKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 385 ~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++++|+||.+... +....+++.+++.++.++.. ++..|..
T Consensus 67 ~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~ai-vivvtNP 120 (145)
T d2cmda1 67 LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKAC-IGIITNP 120 (145)
T ss_dssp HTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSE-EEECSSS
T ss_pred cCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcE-EEEccCC
Confidence 9999999988621 34456666777888876654 4444443
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.94 E-value=2.3e-06 Score=76.77 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+..-|.+|..||+........ ... ...++ +.++.
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~--------------------------~~~-~~~~l~~~l~~ 96 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEK--------------------------KGY-YVDSLDDLYKQ 96 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH--------------------------TTC-BCSCHHHHHHH
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCccccccccc--------------------------cee-eeccccccccc
Confidence 589999999999999999999999999999875431110 111 12344 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhcc
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKT 435 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~ 435 (539)
||+|+.++|-+.+.+.-+-++....++++++++..+-+ +....+...+
T Consensus 97 sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL 146 (197)
T d1j4aa1 97 ADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGL 146 (197)
T ss_dssp CSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH
T ss_pred cccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHH
Confidence 99999999977765544445666788999988754444 3333444444
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.91 E-value=3e-05 Score=69.07 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEE
Q 009256 27 ALAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~---~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ia 103 (539)
.++.++...+...+..++.++ ++. +.|.+.| +|+.. ...++ +.|..++.||..
T Consensus 32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS~G------G~v~~----------------glai~-d~i~~~~~~v~t 87 (192)
T d1y7oa1 32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNTPG------GSVSA----------------GLAIV-DTMNFIKADVQT 87 (192)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEECC------BCHHH----------------HHHHH-HHHHHSSSCEEE
T ss_pred EEchHHHHHHHHHHHHhhhhcccCcee-eeecCCC------CCHHH----------------HHHHH-HHHHhcCcceEE
Confidence 378888888888777665322 343 3335443 33221 22455 678999999999
Q ss_pred EEcCccccchhHhhhc--cCEEEeeCCceEeCCcccCCCCCCcchhh------cc-----------ccc--cCHHHHHHH
Q 009256 104 AVEGLALGGGLELAMG--CHARIAAPKTQLGLPELTLGVIPGFGGTQ------RL-----------PRL--VGLSKAIEM 162 (539)
Q Consensus 104 av~G~a~GgG~~lal~--~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~------~l-----------~r~--vG~~~a~~l 162 (539)
.+.|.|.+.|.-|+++ ||-|++.++++|-+-....|......... .+ ... ....+..+.
T Consensus 88 ~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~~~ 167 (192)
T d1y7oa1 88 IVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD 167 (192)
T ss_dssp EEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred EeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 9999999999988886 57999999999999888766532111110 01 111 123444566
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-....++|+||+++||||+|+..
T Consensus 168 ~~rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 168 AERDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp HHSCCCBCHHHHHHHTSCSEECCC
T ss_pred hcCCceecHHHHHHcCCCcEEecC
Confidence 667788999999999999999853
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.87 E-value=2.5e-06 Score=76.39 Aligned_cols=103 Identities=14% Similarity=0.018 Sum_probs=72.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||+|.+|..+|..+..-|.+|..||+....-... . ..+....++ +.++.
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-~------------------------~~~~~~~~l~~ll~~ 104 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVER-A------------------------LGLQRVSTLQDLLFH 104 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHH-H------------------------HTCEECSSHHHHHHH
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccchh-h------------------------hccccccchhhcccc
Confidence 489999999999999999999999999999864421110 0 122334455 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~ 436 (539)
||+|+.++|-+.+.+.-+=.+..+.++++++++..+-+- ....+...+.
T Consensus 105 sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 155 (193)
T d1mx3a1 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 155 (193)
T ss_dssp CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred CCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence 999999999766655444456677899999887555443 3345545443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.86 E-value=5.8e-05 Score=62.84 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=61.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|.|+|+|.+|..++..|.+.|++|+++|.|++.++.+.+... ...+.....+.+... ...+.++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~---~~vi~Gd~~~~~~l~-----------~~~i~~a 66 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID---ALVINGDCTKIKTLE-----------DAGIEDA 66 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS---SEEEESCTTSHHHHH-----------HTTTTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh---hhhccCcccchhhhh-----------hcChhhh
Confidence 48999999999999999999999999999999999887644210 000000000100000 0236789
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
|.++.+.+++.. ..+...+.+.+.+..+++.
T Consensus 67 ~~vv~~t~~d~~--N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 67 DMYIAVTGKEEV--NLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp SEEEECCSCHHH--HHHHHHHHHHTTCCCEEEE
T ss_pred hhhcccCCcHHH--HHHHHHHHHHcCCceEEEE
Confidence 999988775532 2233334455566666654
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.85 E-value=6.5e-06 Score=72.26 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=37.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|||+|.||..+|..|+++||+|+++||+.++++.+.+
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~ 43 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA 43 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh
Confidence 68999999999999999999999999999999998887643
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.85 E-value=1.5e-05 Score=68.90 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=64.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
++|.|||+|.||..++.+|...|. +|++++|+.++++.+.+.+ + ......+++ +.+.
T Consensus 25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----------~-----------~~~~~~~~~~~~l~ 83 (159)
T d1gpja2 25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----------G-----------GEAVRFDELVDHLA 83 (159)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----------T-----------CEECCGGGHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----------h-----------cccccchhHHHHhc
Confidence 589999999999999999999998 7999999998887764432 1 111122333 5678
Q ss_pred CcCEEEEcccCCh-hHHHHHHHHHHHhCC--CCeEEEecC
Q 009256 387 DVDMVIEAVIESV-PLKQKIFSELEKACP--PHCILATNT 423 (539)
Q Consensus 387 ~aDlVi~avpe~~-~~~~~~~~~l~~~~~--~~~ii~s~t 423 (539)
++|+||.|++.+. -+.++.++.....-+ ...++++.+
T Consensus 84 ~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 84 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred cCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence 9999999996443 344555555444332 234666654
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=8.7e-06 Score=72.22 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 28 LAIPIVAGLKDKFEEATSRD---DVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~d~---~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
++.++...+...+..++.++ .+. +.|.+. |+|+. ....++ +.|..++.||...
T Consensus 25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~------GG~v~----------------~g~~i~-d~i~~~~~~v~tv 80 (183)
T d1yg6a1 25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINSP------GGVIT----------------AGMSIY-DTMQFIKPDVSTI 80 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEEC------CBCHH----------------HHHHHH-HHHHHSSSCEEEE
T ss_pred ECHHHHHHHHHHHHHhhhhccCCceE-EEEeCC------CccHH----------------HHHHHH-HHHHhCCCCEEEE
Confidence 78888888888887776433 333 333433 34332 123455 7789999999999
Q ss_pred EcCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhhc------------------ccccc--CHHHHHHH
Q 009256 105 VEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLV--GLSKAIEM 162 (539)
Q Consensus 105 v~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~r~v--G~~~a~~l 162 (539)
+.|.|.+.|.-+.++|| .|++.++++|-+-+...|. +|-..- +.... ......++
T Consensus 81 ~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~---~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~~~ 157 (183)
T d1yg6a1 81 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD 157 (183)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EEEEeHHHHHHHHHcCCCCceeeCCCceEEeccccccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999998 7999999999887665443 121111 11111 22334444
Q ss_pred HHcCCCCCHHHHHHcCCcceecCc
Q 009256 163 MLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 163 ~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
+-.-..++|+||+++||||+|+..
T Consensus 158 ~~~d~~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 158 TERDRFLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp TSSCEEEEHHHHHHHTSSSEECCC
T ss_pred hccCccccHHHHHHcCCCcEEecc
Confidence 444566899999999999999864
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=97.80 E-value=4.8e-06 Score=74.32 Aligned_cols=104 Identities=11% Similarity=-0.001 Sum_probs=73.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+...|.+|..||+.........+ ..+....++ +.+++
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~~l~~ 100 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE------------------------LNLTWHATREDMYPV 100 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHGGG
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeecccccccccc------------------------ccccccCCHHHHHHh
Confidence 58999999999999999999999999999986432111100 123334444 67899
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~ 436 (539)
||+|+.++|-+.+.+.-+=++..+.++++++++..+-+ +....+...+.
T Consensus 101 sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~ 151 (188)
T d2naca1 101 CDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALE 151 (188)
T ss_dssp CSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred ccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHh
Confidence 99999999977765555556677889999988754444 33445555444
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.76 E-value=1.2e-05 Score=71.78 Aligned_cols=104 Identities=9% Similarity=-0.036 Sum_probs=72.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+...|.+|..||+.......... .......++ +.++.
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~------------------------~~~~~~~~l~~ll~~ 103 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEAS------------------------YQATFHDSLDSLLSV 103 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHH------------------------HTCEECSSHHHHHHH
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhc------------------------ccccccCCHHHHHhh
Confidence 68999999999999999999999999999986543222110 112223344 56889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+-. -..+...+.
T Consensus 104 sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~ 154 (191)
T d1gdha1 104 SQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE 154 (191)
T ss_dssp CSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred CCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHH
Confidence 9999999998776554444567788999998875444433 334444443
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=97.75 E-value=8.1e-05 Score=66.08 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHHhcC--CCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 28 LAIPIVAGLKDKFEEATSR--DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 28 l~~~~~~~l~~~~~~~~~d--~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
+|.++..++...+..++.. +++.+ .|.+ .|+|+.. ...++ +.+..++.||...+
T Consensus 27 Id~~~~~~~i~~l~~l~~~~~~~I~l-~INS------~GG~v~~----------------g~ai~-d~i~~~~~~v~tv~ 82 (190)
T d2f6ia1 27 INKKTADELISQLLYLDNINHNDIKI-YINS------PGGSINE----------------GLAIL-DIFNYIKSDIQTIS 82 (190)
T ss_dssp BCHHHHHHHHHHHHHHHHHCCSCEEE-EEEE------CCBCHHH----------------HHHHH-HHHHHSSSCEEEEE
T ss_pred eCHHHHHHHHHHHHHHhccCCCCeEE-EEeC------chhhhhH----------------HHHHH-HHHHhhCCceEEEE
Confidence 7888888888888777543 33433 3333 3343321 23455 67889999999999
Q ss_pred cCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhhc------------------cccccCH--HHHHHHH
Q 009256 106 EGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLVGL--SKAIEMM 163 (539)
Q Consensus 106 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~r~vG~--~~a~~l~ 163 (539)
.|.|.+.|.-+++++| .|++.++++|-+.....|.. |...- +...-|. ..-.+.+
T Consensus 83 ~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~~~ 159 (190)
T d2f6ia1 83 FGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDS 159 (190)
T ss_dssp EEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred eccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhc
Confidence 9999999999999988 69999999999988876642 22211 1122221 2334444
Q ss_pred HcCCCCCHHHHHHcCCcceecCc
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
-.-..++|+||+++||||+|+..
T Consensus 160 ~~d~~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 160 DRDYYMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp HTTCEECHHHHHHHTSCSEECCC
T ss_pred cCCeeecHHHHHHcCCCcEEccc
Confidence 45667899999999999999853
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.67 E-value=4e-06 Score=75.44 Aligned_cols=100 Identities=13% Similarity=0.010 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|||||.|.+|..+|..+..-|.+|+.||+.+..... .... ..++ +.++.
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~---------------------------~~~~-~~~l~~l~~~ 97 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH---------------------------PDFD-YVSLEDLFKQ 97 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC---------------------------TTCE-ECCHHHHHHH
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhhh---------------------------cchh-HHHHHHHHHh
Confidence 58999999999999999999999999999987532100 0111 1233 55688
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC--hHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID--LNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~--~~~i~~~~~ 436 (539)
||+|+.++|-..+.+.-+=++....++++++++..+-+-. ...+...+.
T Consensus 98 ~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~ 148 (199)
T d1dxya1 98 SDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLK 148 (199)
T ss_dssp CSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred cccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHh
Confidence 9999999998776554444566778899998875444433 345555443
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=9.8e-06 Score=71.89 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=76.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+..-|.+|..||+......... ..+. ..++ +.++.
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-------------------------~~~~-~~~l~ell~~ 98 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-------------------------LGIE-LLSLDDLLAR 98 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH-------------------------HTCE-ECCHHHHHHH
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhh-------------------------cCce-eccHHHHHhh
Confidence 5899999999999999999999999999998754322210 0111 1233 56889
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC--CChHHHhhccCCCC-cEEEeccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST--IDLNIVGEKTSSQD-RIIGAHFF 447 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~--~~~~~i~~~~~~~~-r~vg~h~~ 447 (539)
||+|+.++|-..+.+.-+=++....++++++++..+-+ +.-..+...+.... ...++..|
T Consensus 99 sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~ 161 (184)
T d1ygya1 99 ADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161 (184)
T ss_dssp CSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSC
T ss_pred CCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCC
Confidence 99999999987765544445677889999988755444 33345555554322 23445544
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=4.5e-05 Score=65.30 Aligned_cols=88 Identities=13% Similarity=0.048 Sum_probs=62.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++++|+|.|.+|..+|..+...|-+|+++|++|-..-++. - .......-.+++..+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-----------~-------------dG~~v~~~~~a~~~a 80 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA-----------M-------------EGYEVTTMDEACQEG 80 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-----------H-------------TTCEECCHHHHTTTC
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh-----------c-------------CceEeeehhhhhhhc
Confidence 4799999999999999999999999999999985432221 1 222222222778899
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNTS 424 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts 424 (539)
|+||.+....-.+. .+-.+.+++++|++..++
T Consensus 81 divvtaTGn~~vI~----~eh~~~MKdgaIL~N~Gh 112 (163)
T d1li4a1 81 NIFVTTTGCIDIIL----GRHFEQMKDDAIVCNIGH 112 (163)
T ss_dssp SEEEECSSCSCSBC----HHHHTTCCTTEEEEECSS
T ss_pred cEEEecCCCccchh----HHHHHhccCCeEEEEecc
Confidence 99998876533232 233457899999876443
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.57 E-value=0.00013 Score=64.70 Aligned_cols=132 Identities=14% Similarity=0.178 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEE
Q 009256 27 ALAIPIVAGLKDKFEEATSR---DDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVA 103 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d---~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~ia 103 (539)
-++.++...+...+..++.. .++... |.+.| +|+. ....++ +.|..++.||..
T Consensus 34 ~I~~~~~~~~i~~l~~l~~~~~~~~I~l~-InS~G------G~v~----------------~g~~i~-d~i~~~~~~V~t 89 (193)
T d1tg6a1 34 PIDDSVASLVIAQLLFLQSESNKKPIHMY-INSPG------GVVT----------------AGLAIY-DTMQYILNPICT 89 (193)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEE-EEECC------BCHH----------------HHHHHH-HHHHHSCSCEEE
T ss_pred EEchHHHHHHHHHHHHhcccCCCcEEEEE-eecCc------ccHH----------------HHHHHH-HHHHhhcCceEE
Confidence 37888888888777666532 345433 34443 2221 122455 678999999999
Q ss_pred EEcCccccchhHhhhccC--EEEeeCCceEeCCcccCCCCCCcchhhc------------------ccccc--CHHHHHH
Q 009256 104 AVEGLALGGGLELAMGCH--ARIAAPKTQLGLPELTLGVIPGFGGTQR------------------LPRLV--GLSKAIE 161 (539)
Q Consensus 104 av~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------l~r~v--G~~~a~~ 161 (539)
.+.|.|.+.|.-+.+++| .|++.++|+|-+-+...|.. |-..- +.... ......+
T Consensus 90 v~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~---G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~~ 166 (193)
T d1tg6a1 90 WCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR---GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIES 166 (193)
T ss_dssp EEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred EEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999 59999999999887765542 22111 11111 2234445
Q ss_pred HHHcCCCCCHHHHHHcCCcceecC
Q 009256 162 MMLLSKSITSEEGWKLGLIDAVVT 185 (539)
Q Consensus 162 l~l~g~~~~a~eA~~~Glv~~vv~ 185 (539)
++-.-..++|+||+++||||+|+.
T Consensus 167 ~~~rD~~lta~EAl~yGliD~Ii~ 190 (193)
T d1tg6a1 167 AMERDRYMSPMEAQEFGILDKVLV 190 (193)
T ss_dssp HHSSCEEECHHHHHHHTSCSEECS
T ss_pred HhccCccCCHHHHHHcCCCCEEcc
Confidence 554556699999999999999984
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.55 E-value=8.4e-05 Score=64.94 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=64.9
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (539)
..||+|+|+ |.+|.+++..|+.... .+.++|+++..-. .+.+.-.+.. .... .......+
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~--l~g~~mdl~d----~a~~------~~~~~~~~ 91 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQA--LEGVAMELED----SLYP------LLREVSIG 91 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHH--HHHHHHHHHT----TTCT------TEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccch--hcchhhhhcc----cccc------cccCcccc
Confidence 358999996 9999999999987532 6777787654311 1111111111 0000 01233444
Q ss_pred CC-ccCCCCcCEEEEccc--------------CChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 380 LD-YSEFKDVDMVIEAVI--------------ESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 380 ~~-~~~~~~aDlVi~avp--------------e~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++ +++++++|+||.... .+..+.+++.+.+.++.+++++|+..+..
T Consensus 92 ~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NP 152 (175)
T d7mdha1 92 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNP 152 (175)
T ss_dssp SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred ccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCc
Confidence 44 488999999998762 13445666667788999888866544443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.54 E-value=6.3e-05 Score=64.46 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=61.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL 380 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 380 (539)
.||+|||+ |.+|.+++..|+..+. +++++|.++.....-.... . ....... ....+...+
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~--~----~~~~~~~------~~~~~~~~~ 71 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLM--E----LQDCALP------LLKDVIATD 71 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH--H----HHHTCCT------TEEEEEEES
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhh--h----hcccccc------cccccccCc
Confidence 38999995 9999999999987542 5788887754322111100 0 0000000 002334444
Q ss_pred Cc-cCCCCcCEEEEcccC--------------ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 381 DY-SEFKDVDMVIEAVIE--------------SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 381 ~~-~~~~~aDlVi~avpe--------------~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+. ++++++|+||.+... +....+++..++.++.+.+.+++
T Consensus 72 ~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~ii 126 (154)
T d5mdha1 72 KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVI 126 (154)
T ss_dssp CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEE
Confidence 44 789999999987621 23456666677888888877443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=8.5e-06 Score=72.62 Aligned_cols=100 Identities=17% Similarity=0.218 Sum_probs=72.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|+|||.|.+|..+|..+...|.+|..||+...... .......++ +.++.
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----------------------------~~~~~~~~l~ell~~ 96 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----------------------------GNATQVQHLSDLLNM 96 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----------------------------TTCEECSCHHHHHHH
T ss_pred eEEEEeecccchhhhhhhcccccceEeeccccccchh----------------------------hhhhhhhhHHHHHhh
Confidence 5899999999999999999999999999998643100 011112344 56789
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCC--ChHHHhhccC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTI--DLNIVGEKTS 436 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~--~~~~i~~~~~ 436 (539)
||+|+.++|-..+.+.-+=++..+.++++++++..+-+- ...++...+.
T Consensus 97 sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~ 147 (188)
T d1sc6a1 97 SDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALA 147 (188)
T ss_dssp CSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHH
T ss_pred ccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHH
Confidence 999999999777665555567778899999988555443 3345555443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.47 E-value=3.3e-05 Score=66.30 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=60.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-------eEEEEeC--ChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-------YVVLKEV--NSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-------~V~~~d~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
.||+|||+ |.+|..++..|+..++ ...+++. +.+..+...... ...... .......
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~------~~~~~~~ 70 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMEL--------EDCAFP------LLAGLEA 70 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHH--------HTTTCT------TEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhh--------hccccc------ccccccc
Confidence 38999997 9999999999998653 2334443 333333221111 100000 0022333
Q ss_pred cCC-ccCCCCcCEEEEccc--C------------ChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 379 VLD-YSEFKDVDMVIEAVI--E------------SVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 379 ~~~-~~~~~~aDlVi~avp--e------------~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.++ +++++++|+||.+.. . +....+++..++.++.+++.+++..|..
T Consensus 71 ~~~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNP 132 (154)
T d1y7ta1 71 TDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNP 132 (154)
T ss_dssp ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred CCchhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 333 478999999998762 1 3345556667788888888766544443
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.45 E-value=8.8e-05 Score=63.50 Aligned_cols=93 Identities=19% Similarity=0.171 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|+|||.|.-|.+-|.+|...|++|++--|... ..+++. + +.+.+.+-.++++.
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~-----------~-------------~Gf~v~~~~eA~~~ 72 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE-----------A-------------HGLKVADVKTAVAA 72 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH-----------H-------------TTCEEECHHHHHHT
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh-----------h-------------hccccccHHHHhhh
Confidence 5899999999999999999999999998766543 233331 1 23443333378899
Q ss_pred cCEEEEcccCChhHHHHHHH-HHHHhCCCCeEEEecCCCCCh
Q 009256 388 VDMVIEAVIESVPLKQKIFS-ELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~-~l~~~~~~~~ii~s~ts~~~~ 428 (539)
+|+|...+| .+.-..+++ +|.++++++..+.- +.+..+
T Consensus 73 aDiim~L~P--D~~q~~vy~~~I~p~lk~g~~L~F-aHGfnI 111 (182)
T d1np3a2 73 ADVVMILTP--DEFQGRLYKEEIEPNLKKGATLAF-AHGFSI 111 (182)
T ss_dssp CSEEEECSC--HHHHHHHHHHHTGGGCCTTCEEEE-SCCHHH
T ss_pred cCeeeeecc--hHHHHHHHHHhhhhhcCCCcEEEE-eccceE
Confidence 999999999 444557785 69999999987753 334443
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.00071 Score=62.91 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=91.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEE
Q 009256 25 VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAA 104 (539)
Q Consensus 25 ~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaa 104 (539)
.-+++....+.+..+.+.+.+.. +-.|.++- |.|+.+.+-... ...+...... + ..+.....|+|++
T Consensus 109 gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~-----sgG~r~~e~~~s-----l~~~~~~~~~-~-~~~~~~~vP~I~v 175 (263)
T d2f9yb1 109 GGSMGSVVGARFVRAVEQALEDN-CPLICFSA-----SGGARMQEALMS-----LMQMAKTSAA-L-AKMQERGLPYISV 175 (263)
T ss_dssp TTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEE-----ESSBCGGGTHHH-----HHHHHHHHHH-H-HHHHHTTCCEEEE
T ss_pred ccccccchhhHHhHHHHHHHHcC-CCeEEEec-----CCCcccccccch-----hhcchhHHHH-H-HHHHhCCCceEEE
Confidence 47888899999999998887653 44666653 334444432110 1111121212 2 3356788999999
Q ss_pred EcCccccchh-HhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCC-----HHHHHHcC
Q 009256 105 VEGLALGGGL-ELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSIT-----SEEGWKLG 178 (539)
Q Consensus 105 v~G~a~GgG~-~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~-----a~eA~~~G 178 (539)
+.|+|.||+. .+++++|++++.+.+.+++.- +... + -.+|+.++ ++-..+-|
T Consensus 176 ~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aG--------------------P~vv-e-~~~ge~~~e~~g~a~~~~~~G 233 (263)
T d2f9yb1 176 LTDPTMGGVSASFAMLGDLNIAEPKALIGFAG--------------------PRVI-E-QTVREKLPPGFQRSEFLIEKG 233 (263)
T ss_dssp EEEEEEHHHHTTGGGCCSEEEECTTCBEESSC--------------------HHHH-H-HHHTSCCCTTTTBHHHHGGGT
T ss_pred ecCCcchHHHhhhhhcCceEeeecceeeeccC--------------------HHHH-h-hhcCCcCChhhccHHHHHhCC
Confidence 9999999986 588888999988888776531 1111 1 13355444 34445789
Q ss_pred CcceecCcchHHHHHHHHHHHHHhcC
Q 009256 179 LIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 179 lv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
+||.|+++++..++..++.+-|...|
T Consensus 234 ~iD~vv~~ee~~~~l~~~l~~L~~~p 259 (263)
T d2f9yb1 234 AIDMIVRRPEMRLKLASILAKLMNLP 259 (263)
T ss_dssp CCSEECCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEECCHHHHHHHHHHHHHHhhCC
Confidence 99999988876666656555555444
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.31 E-value=0.0002 Score=63.43 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=65.5
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCC------CeEEEEeCCh-HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNN------IYVVLKEVNS-EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV 379 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G------~~V~~~d~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 379 (539)
.++||+|||.|..|.+-|.+|.+.| ..|++-=|.. ...+++.+ .|... ...+..
T Consensus 43 g~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~-----------dGf~v--------~~~~v~ 103 (226)
T d1qmga2 43 GIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARA-----------AGFSE--------ENGTLG 103 (226)
T ss_dssp TCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHH-----------TTCCG--------GGTCEE
T ss_pred CCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHH-----------cCCcc--------CCCccc
Confidence 4679999999999999999999955 5566543332 23333321 22100 001111
Q ss_pred CCccCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 380 LDYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 380 ~~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
+-.++++.+|+|...+|+.. -.+++++|.++++++..+.. +-+..+
T Consensus 104 ~v~EAv~~ADiVmiLlPDe~--Q~~vy~~I~p~Lk~G~~L~F-aHGFnI 149 (226)
T d1qmga2 104 DMWETISGSDLVLLLISDSA--QADNYEKVFSHMKPNSILGL-SHGFLL 149 (226)
T ss_dssp EHHHHHHTCSEEEECSCHHH--HHHHHHHHHHHSCTTCEEEE-SSSHHH
T ss_pred CHHHHHhhCCEEEEecchHH--HHHHHHHHHHhcCCCceeee-cchhhh
Confidence 22267899999999999444 55788999999999997753 334444
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.22 E-value=0.0016 Score=61.02 Aligned_cols=170 Identities=14% Similarity=0.079 Sum_probs=96.2
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 13 ~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+.-+.|.-|.+. .-++++...+.+..+++.+.... +-+|.|.- |.|+.+.+-...... .......+.+ +
T Consensus 103 G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~d-----s~Ga~~~~~~e~~~~--~~~~g~~~~~-~ 173 (287)
T d1pixa2 103 GKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYPN--RRGGGTPFFR-N 173 (287)
T ss_dssp TEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSSS--TTSTTHHHHH-H
T ss_pred cceEEEEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEec-----CCcccCCcchhhccc--hhhHHHHHHH-H
Confidence 333334445553 36888888888888888777653 45666643 334444322111100 1112222222 2
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcc--cCCCCCCcchhhccccccCHHHHHHH-HHcCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPEL--TLGVIPGFGGTQRLPRLVGLSKAIEM-MLLSK 167 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~--~~Gl~p~~g~~~~l~r~vG~~~a~~l-~l~g~ 167 (539)
..+....+|+|++|.|.|+|||...+++||++++.+++.+.+.-. --+..+. ..+....+.++ ..+|+
T Consensus 174 -a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~--------~~~~~~~~~ei~~~~ge 244 (287)
T d1pixa2 174 -AELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPK--------GHVDLEYANEIADMVDR 244 (287)
T ss_dssp -HHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSS--------SSCCHHHHHHHHHHHHT
T ss_pred -HHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchh--------hhhhhhhHHHHHhhhcc
Confidence 236678899999999999999998999999999999998776322 1122111 11122222222 22344
Q ss_pred CCCH-----HH--HHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 168 SITS-----EE--GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 168 ~~~a-----~e--A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
.++. .+ +..-|.+|.|++++ +++.+.++++.+.
T Consensus 245 ~~~~eeLGGa~~H~~~sG~~d~v~~~e---~~ai~~~r~~ls~ 284 (287)
T d1pixa2 245 TGKTEPPGAVDIHYTETGFMREVYASE---EGVLEGIKKYVGM 284 (287)
T ss_dssp TCCCCCSSBHHHHTTTSCCSCEEESSH---HHHHHHHHHHHHT
T ss_pred cccccccccHHHhhhhcccceeecCCH---HHHHHHHHHHHhh
Confidence 4443 33 33569999999775 3445555555443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.20 E-value=0.00025 Score=60.67 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=65.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
-||.|||+|.-|..-+.....-|-+|+++|.++++++++.+.. ...++....+.+ .+ +.+++
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~----~~~~~~~~~~~~-------------~l~~~~~~ 95 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLF----GSRVELLYSNSA-------------EIETAVAE 95 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----GGGSEEEECCHH-------------HHHHHHHT
T ss_pred cEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhh----cccceeehhhhh-------------hHHHhhcc
Confidence 4899999999999999999999999999999999988764432 111111101111 12 56789
Q ss_pred cCEEEEccc--CChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVI--ESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avp--e~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
||+||-++- ....-+ -+-++..+.++++.+|++.+
T Consensus 96 aDivI~aalipG~~aP~-lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 96 ADLLIGAVLVPGRRAPI-LVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp CSEEEECCCCTTSSCCC-CBCHHHHTTSCTTCEEEETT
T ss_pred CcEEEEeeecCCcccCe-eecHHHHhhcCCCcEEEEee
Confidence 999998872 211100 11244567789999998654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.18 E-value=0.00027 Score=60.03 Aligned_cols=87 Identities=15% Similarity=0.101 Sum_probs=64.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+++.|+|.|..|.++|..+...|-.|+++++||-.+-++ .++.....+-.++++.+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA------------------------~mdGf~v~~~~~a~~~a 79 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA------------------------VMEGFNVVTLDEIVDKG 79 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH------------------------HTTTCEECCHHHHTTTC
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH------------------------HhcCCccCchhHccccC
Confidence 589999999999999999999999999999999542222 11233333333789999
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
|++|.+......+. .+-.+.+++++|++...
T Consensus 80 Di~vTaTGn~~vI~----~~h~~~MKdgaIl~N~G 110 (163)
T d1v8ba1 80 DFFITCTGNVDVIK----LEHLLKMKNNAVVGNIG 110 (163)
T ss_dssp SEEEECCSSSSSBC----HHHHTTCCTTCEEEECS
T ss_pred cEEEEcCCCCcccc----HHHHHHhhCCeEEEecc
Confidence 99999987644332 23345789999887544
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=97.14 E-value=0.004 Score=57.17 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=92.0
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
+.-+... .-+++....+.+..+.+.+.... +-+|.+.- |.|+.+.+-... ...+...+... ..+.
T Consensus 93 v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~~~-----l~~~~~~~~~~--~~ls 159 (253)
T d1on3a1 93 AASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGIDS-----LSGYGKMFFAN--VKLS 159 (253)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHHHHH--HHHT
T ss_pred hhhchhhhhcccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCccccccee-----ccccceehHHH--HHHh
Confidence 3334443 37899999999999999887654 44555532 334444331110 11111222122 1233
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHH-
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEG- 174 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA- 174 (539)
-..|+|+++.|+|+||+.....+||++|+.+++.+++.- +.... ..+|+.++.+|.
T Consensus 160 -~~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aG--------------------P~vVe--~~~ge~~~~eelG 216 (253)
T d1on3a1 160 -GVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITG--------------------PQVIK--SVTGEDVTADELG 216 (253)
T ss_dssp -TTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSC--------------------HHHHH--HHHCCCCCHHHHH
T ss_pred -ccceEEEEEecCcccceeeccchhhheeccccceEEecC--------------------cchhh--hhhCCcCChHhcc
Confidence 358999999999999999999999999999988776531 11111 125677776532
Q ss_pred ------HHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 009256 175 ------WKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 175 ------~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
..-|.||.|++.++ .+.++++++.+.-
T Consensus 217 ga~~h~~~sG~iD~v~~~e~---~a~~~~r~lls~l 249 (253)
T d1on3a1 217 GAEAHMAISGNIHFVAEDDD---AAELIAKKLLSFL 249 (253)
T ss_dssp SHHHHHHTTCCCSEEESSHH---HHHHHHHHHHHTS
T ss_pred CHHHhhhccccceEEECCHH---HHHHHHHHHHHhc
Confidence 35799999998864 3556666655543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.10 E-value=0.00075 Score=52.40 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=32.7
Q ss_pred CCcceEEEEcCCCCc-HHHHHHHHHCCCeEEEEeCChH
Q 009256 306 RGVRKVAVIGGGLMG-SGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG-~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
..+++|-|||.|-.| +++|..|.+.|++|+++|....
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~ 43 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG 43 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 457899999999999 7779999999999999998743
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.0095 Score=54.72 Aligned_cols=152 Identities=14% Similarity=0.058 Sum_probs=92.3
Q ss_pred CcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHH
Q 009256 13 DGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELV 90 (539)
Q Consensus 13 ~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (539)
+.-+.|.-+... .-+++....+.+..+.+.+.++. +-+|.+.- |+|+.+.+-... ...+...+ ...
T Consensus 88 G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~d-----sgGar~~eg~~~-----~~~~~~~~-~~~ 155 (258)
T d2a7sa1 88 GRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGVVS-----LGLYSRIF-RNN 155 (258)
T ss_dssp SSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGCTHH-----HHHHHHHH-HHH
T ss_pred cceEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEec-----cCCccccccccc-----ccchhhHH-HHH
Confidence 333334444443 37889999999999999887664 44565542 234444321100 00111111 112
Q ss_pred HHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeC-CceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC
Q 009256 91 VNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI 169 (539)
Q Consensus 91 ~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~ 169 (539)
....-..|+|+++.|+|.||+......||++|+.+ .+.+++. |+...+ ..+|+.+
T Consensus 156 --~~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a--------------------GP~vV~--~~~ge~~ 211 (258)
T d2a7sa1 156 --ILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIK--TVTGEEV 211 (258)
T ss_dssp --HHHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS--------------------CHHHHH--HHHCCCC
T ss_pred --HHHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEcc--------------------ChhHHH--HhcCCcc
Confidence 23456799999999999999999999999998875 4544422 222222 2378889
Q ss_pred CHHHH-------HHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 170 TSEEG-------WKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 170 ~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
+.+|. .+.|++|.|++++ +.+.+.++++.+.
T Consensus 212 ~~eeLGga~~h~~~sG~~D~v~~de---~~a~~~~r~~Ls~ 249 (258)
T d2a7sa1 212 TMEELGGAHTHMAKSGTAHYAASGE---QDAFDYVRELLSY 249 (258)
T ss_dssp CHHHHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHHH
T ss_pred ChhhccCHhHhhhhccccceEeCCH---HHHHHHHHHHHHh
Confidence 88753 4679999999755 3344455554444
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=6.1e-05 Score=67.70 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCcceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 306 RGVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 306 ~~~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
|.|+||.|+| .|.+|+.++..|+++||+|++++|+++++.
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~ 41 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP 41 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc
Confidence 4578999999 599999999999999999999999987643
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.0025 Score=60.26 Aligned_cols=137 Identities=13% Similarity=0.006 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEEc
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAVE 106 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav~ 106 (539)
.++++-+..-...++.++.- .+-+|-|-=++ .|-.|.+-++.. ......+.+ ..+.++++|+|+.|-
T Consensus 131 ~~~p~~~rKa~r~~~~a~~~-~~Pii~~vDtp-G~~~g~~~E~~g----------~~~~~a~~~-~~~~~~~vP~i~vv~ 197 (316)
T d2f9ya1 131 MPAPEGYRKALRLMQMAERF-KMPIITFIDTP-GAYPGVGAEERG----------QSEAIARNL-REMSRLGVPVVCTVI 197 (316)
T ss_dssp CCCHHHHHHHHHHHHHHHHT-TCCEEEEEEES-CSCCSHHHHHTT----------HHHHHHHHH-HHHHTCSSCEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHc-CcceEEEEecC-cccCCccccccc----------HHHHHHHHH-HHHHhCCCceEEEEE
Confidence 57888888888888888765 35555553222 244444332221 112233455 568999999999999
Q ss_pred CccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCCCHHHHHHcCCcceecCc
Q 009256 107 GLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSITSEEGWKLGLIDAVVTS 186 (539)
Q Consensus 107 G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 186 (539)
|-+.|||.--...+|.+.+-++|+|+. +.|.+..+..+...--...|.+ ...+++++.+++|+||+|+|+
T Consensus 198 g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAe----alklta~dL~~lgiIDeII~E 267 (316)
T d2f9ya1 198 GEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAE----AMGIIRPRLKELKLIDSIIPE 267 (316)
T ss_dssp EEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHH----HHTCSHHHHHTTTSCSCCCCC
T ss_pred hhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHH----HHhhhhHHHHHcCchhhcccC
Confidence 999999998888999999999999982 3465555554443322233333 245899999999999999964
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.97 E-value=0.00083 Score=57.98 Aligned_cols=41 Identities=20% Similarity=0.079 Sum_probs=36.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|-.+.+++..|.+.|. +|++++|++++.+.+.+
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~ 59 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAA 59 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHH
Confidence 479999999999999999999997 89999999998777643
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.00069 Score=58.69 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=37.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|-.+.+++..|.+.|.+|++++|++++.+.+.+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~ 59 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK 59 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHH
Confidence 47999999999999999999999999999999998887654
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.85 E-value=0.00053 Score=59.54 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=52.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-CccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~ 387 (539)
++|.|+|+|-++.+++..|.+.+-+|++++|++++++...+.+. ..+ .+.... +...+.+
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~-------~~~------------~~~~~~~~~~~~~~ 79 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ-------PYG------------NIQAVSMDSIPLQT 79 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG-------GGS------------CEEEEEGGGCCCSC
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh-------hcc------------ccchhhhccccccc
Confidence 47999999999999999999988899999999998887755431 111 111111 1134678
Q ss_pred cCEEEEcccCC
Q 009256 388 VDMVIEAVIES 398 (539)
Q Consensus 388 aDlVi~avpe~ 398 (539)
+|+||.|+|-.
T Consensus 80 ~diiIN~tp~g 90 (171)
T d1p77a1 80 YDLVINATSAG 90 (171)
T ss_dssp CSEEEECCCC-
T ss_pred cceeeeccccc
Confidence 99999999844
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.83 E-value=0.0024 Score=52.24 Aligned_cols=79 Identities=24% Similarity=0.241 Sum_probs=54.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
+||+|+|+ |.||..++..+.+.|+++..- |.+. .+.+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------------------------------~~~~~ 40 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------------------------------VEELD 40 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------------------------------EEECS
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------------------------------HHHhc
Confidence 47999996 999999999999999987743 3221 14567
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~ 432 (539)
++|+||+-.. ++.....++...+ .+..+++.|++.+..++.
T Consensus 41 ~~DVvIDFS~--p~~~~~~l~~~~~---~~~p~ViGTTG~~~~~~~ 81 (128)
T d1vm6a3 41 SPDVVIDFSS--PEALPKTVDLCKK---YRAGLVLGTTALKEEHLQ 81 (128)
T ss_dssp CCSEEEECSC--GGGHHHHHHHHHH---HTCEEEECCCSCCHHHHH
T ss_pred cCCEEEEecC--HHHHHHHHHHHHh---cCCCEEEEcCCCCHHHHH
Confidence 8999998765 4444455444333 345567788888876544
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.81 E-value=0.0036 Score=53.62 Aligned_cols=70 Identities=23% Similarity=0.181 Sum_probs=47.9
Q ss_pred eEEEEcCCCCcHH-HHHHHHHC-CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC-
Q 009256 310 KVAVIGGGLMGSG-IATAHILN-NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF- 385 (539)
Q Consensus 310 kI~iIG~G~mG~~-iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~- 385 (539)
||||||+|.||.. ....+.+. +.++.++|+++++.+...+.. +.....+++ +.+
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~~~~~~~ll~ 60 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY----------------------RVSATCTDYRDVLQ 60 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHT----------------------TCCCCCSSTTGGGG
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc----------------------ccccccccHHHhcc
Confidence 7999999999976 45555554 568899999999877764421 112233444 323
Q ss_pred CCcCEEEEcccCChhH
Q 009256 386 KDVDMVIEAVIESVPL 401 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~ 401 (539)
.+.|+|++++|.+...
T Consensus 61 ~~iD~V~I~tp~~~H~ 76 (167)
T d1xeaa1 61 YGVDAVMIHAATDVHS 76 (167)
T ss_dssp GCCSEEEECSCGGGHH
T ss_pred cccceecccccccccc
Confidence 3689999999966543
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=96.78 E-value=0.012 Score=53.75 Aligned_cols=153 Identities=11% Similarity=0.065 Sum_probs=93.3
Q ss_pred cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-+.|.-+.+. .-+++....+.+..+.+.+.... +-+|.+.- |.|+.+.+-... ...+...+ ..
T Consensus 84 ~G~~v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~d-----sgG~r~~e~~~~-----l~~~~~~~-~~ 151 (251)
T d1vrga1 84 NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVDA-----LAGYGEIF-LR 151 (251)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH-----HHHHHHHH-HH
T ss_pred ccEEEEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCccccccccc-----cccchHHH-HH
Confidence 3433444445554 37888888889999888777653 44555543 234444432110 01111111 11
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeCC-ceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAPK-TQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~ 168 (539)
. ....-..|+|+++.|+|+||+......||++|+.++ +.+++. |+.... ..+|+.
T Consensus 152 ~--~~~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a--------------------Gp~vv~--~~~ge~ 207 (251)
T d1vrga1 152 N--TLASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIK--AVTGEE 207 (251)
T ss_dssp H--HHHTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHH--HHHCCC
T ss_pred H--HHHCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec--------------------Cchhhh--hhcCCc
Confidence 2 233557999999999999999999999999998854 433221 111111 247888
Q ss_pred CCHHHH-------HHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 169 ITSEEG-------WKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 169 ~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
++.++. .+-|++|.+++++ +.+.+.++++.+.
T Consensus 208 ~~~eelGga~~h~~~sG~~D~v~~de---~~a~~~ir~lLs~ 246 (251)
T d1vrga1 208 ISQEDLGGAMVHNQKSGNAHFLADND---EKAMSLVRTLLSY 246 (251)
T ss_dssp CCHHHHHBHHHHHHTSCCCSEEESSH---HHHHHHHHHHHTT
T ss_pred CChHHccchhhhhhccccceEEECCH---HHHHHHHHHHHHh
Confidence 998875 4569999999775 3444555555544
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.72 E-value=0.03 Score=51.26 Aligned_cols=153 Identities=11% Similarity=0.049 Sum_probs=92.6
Q ss_pred cCcEEEEEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-..|.-+... .-+++....+.+..+.+.+.... +-.|.|.-. .|+.+.+-... ...+...+ ..
T Consensus 86 ~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~ds-----gGarm~e~~~~-----~~~~~~~~-~~ 153 (258)
T d1xnya1 86 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGINDS-----GGARIQEGVAS-----LGAYGEIF-RR 153 (258)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-----CSBCGGGTHHH-----HHHHHHHH-HH
T ss_pred CCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEecC-----CCcccCccccc-----ccchhHHH-HH
Confidence 3333333334443 47899999999999998887654 556766543 33444332110 00111111 11
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhhhccCEEEeeC-CceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCC
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELAMGCHARIAAP-KTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKS 168 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~ 168 (539)
. ....-..|+|+++.|+|+||+......||++|+.+ .+.+++. |+.... ..+|+.
T Consensus 154 ~--~~~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~a--------------------GP~vv~--~~~ge~ 209 (258)
T d1xnya1 154 N--THASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIK--TVTGED 209 (258)
T ss_dssp H--HHTTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHH--HHHCCC
T ss_pred H--HHHcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEec--------------------CHHHHH--HHhcCc
Confidence 1 12344689999999999999999999999988875 5555532 111111 347888
Q ss_pred CCHHHH-------HHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 169 ITSEEG-------WKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 169 ~~a~eA-------~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
++.+|. ..-|++|.+++++ +.+.+.++++.+.
T Consensus 210 i~~eelgga~~h~~~sG~~d~v~~de---~ea~~~~r~~Ls~ 248 (258)
T d1xnya1 210 VGFEELGGARTHNSTSGVAHHMAGDE---KDAVEYVKQLLSY 248 (258)
T ss_dssp CCHHHHHBHHHHHHTSSCCSEEESSH---HHHHHHHHHHHHH
T ss_pred cChHHhccHHHHHhcCCeeEEEeCCH---HHHHHHHHHHHHh
Confidence 888875 4569999999765 3444444444443
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.001 Score=57.14 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=47.4
Q ss_pred eEEEEcCCCCcHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 310 KVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
||||||+|.||.. ....+... +++++ ++|+++++.+...+.. .+...++. +.+
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~ 59 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW-----------------------RIPYADSLSSLA 59 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH-----------------------TCCBCSSHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc-----------------------cccccccchhhh
Confidence 7999999999986 45555543 66655 7899998877654321 12334444 335
Q ss_pred CCcCEEEEcccCChhH
Q 009256 386 KDVDMVIEAVIESVPL 401 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~ 401 (539)
.+.|+|++++|.+...
T Consensus 60 ~~~D~V~I~tp~~~h~ 75 (164)
T d1tlta1 60 ASCDAVFVHSSTASHF 75 (164)
T ss_dssp TTCSEEEECSCTTHHH
T ss_pred hhcccccccccchhcc
Confidence 7899999999966543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.67 E-value=0.0023 Score=48.72 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=46.0
Q ss_pred ceEEEEcCCCCcH-HHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGS-GIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~-~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
+||-|||-|-+|. ++|..|.+.|++|.++|+++...-.. +.+.|. .+....+.+.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~----------L~~~Gi-----------~i~~gh~~~~i~~ 60 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAY----------LRKLGI-----------PIFVPHSADNWYD 60 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH----------HHHTTC-----------CEESSCCTTSCCC
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHH----------HHHCCC-----------eEEeeecccccCC
Confidence 4799999999987 78999999999999999886432221 122231 1323344466789
Q ss_pred cCEEEEcc
Q 009256 388 VDMVIEAV 395 (539)
Q Consensus 388 aDlVi~av 395 (539)
+|+||.+-
T Consensus 61 ~d~vV~Ss 68 (89)
T d1j6ua1 61 PDLVIKTP 68 (89)
T ss_dssp CSEEEECT
T ss_pred CCEEEEec
Confidence 99999763
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.61 E-value=0.0014 Score=57.07 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=52.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~ 387 (539)
++|.|+|+|-.+.+++..|.+.| +|++++|++++++.+.+.+...+..... ..+.. .++ ....+
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~ 83 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFG-------------EEVKF-SGLDVDLDG 83 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHH-------------HHEEE-ECTTCCCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhh-------------hhhhh-hhhhhccch
Confidence 47999999999999999998777 9999999999999887665432211000 01111 222 44677
Q ss_pred cCEEEEcccC
Q 009256 388 VDMVIEAVIE 397 (539)
Q Consensus 388 aDlVi~avpe 397 (539)
+|++|.|.|-
T Consensus 84 ~dliIn~tp~ 93 (177)
T d1nvta1 84 VDIIINATPI 93 (177)
T ss_dssp CCEEEECSCT
T ss_pred hhhhccCCcc
Confidence 8999988873
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.59 E-value=0.00065 Score=62.25 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=31.6
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
+-+||.|||+|..|.+.|..|+++|++|+++|++
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4468999999999999999999999999999975
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.56 E-value=0.002 Score=56.34 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=50.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC-C-
Q 009256 310 KVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE-F- 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~- 385 (539)
||||||+|.||...+..+... +++|+ ++|+++++.+...+.. + +. ...+..++++. +
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~----------~-~~--------~~~~~~~~~~~ll~ 63 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATAN----------N-YP--------ESTKIHGSYESLLE 63 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT----------T-CC--------TTCEEESSHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcc----------c-cc--------cceeecCcHHHhhh
Confidence 799999999999999888775 66777 6799998876653321 1 00 11223445522 2
Q ss_pred -CCcCEEEEcccCChhH
Q 009256 386 -KDVDMVIEAVIESVPL 401 (539)
Q Consensus 386 -~~aDlVi~avpe~~~~ 401 (539)
.+.|+|+++.|.+...
T Consensus 64 ~~~iD~v~I~tp~~~h~ 80 (184)
T d1ydwa1 64 DPEIDALYVPLPTSLHV 80 (184)
T ss_dssp CTTCCEEEECCCGGGHH
T ss_pred ccccceeeecccchhhc
Confidence 5689999999976654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.54 E-value=0.0045 Score=49.33 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=52.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
++|.|||+|..|..-++.|++.|.+|++++.....-.. .+.+.+.+. .+.-.-+.+.+.++
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~----------~~~~~~~i~---------~~~~~~~~~dl~~~ 73 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT----------VWANEGMLT---------LVEGPFDETLLDSC 73 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH----------HHHTTTSCE---------EEESSCCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH----------HHHhcCCce---------eeccCCCHHHhCCC
Confidence 58999999999999999999999999999876542111 112222211 11111122568899
Q ss_pred CEEEEcccCChhHHHHHHHH
Q 009256 389 DMVIEAVIESVPLKQKIFSE 408 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~ 408 (539)
++|+.+.. +..+...+.+.
T Consensus 74 ~lv~~at~-d~~~n~~i~~~ 92 (113)
T d1pjqa1 74 WLAIAATD-DDTVNQRVSDA 92 (113)
T ss_dssp SEEEECCS-CHHHHHHHHHH
T ss_pred cEEeecCC-CHHHHHHHHHH
Confidence 99998764 55555555443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00054 Score=52.95 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
+||.|+|+|..|.++|..|.+.|.+|+++|.++.
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 4799999999999999999999999999998653
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.50 E-value=0.0065 Score=51.97 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=36.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
+|.|+|+|.+|...+..+...|.+|+++|+++++++.+++
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH
Confidence 7999999999999999888899999999999999887643
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.48 E-value=0.00093 Score=54.33 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=33.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
++|.|||+|.+|.-+|..|.+.|.+|+++++++.-+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~ 67 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS 67 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeecccccc
Confidence 4899999999999999999999999999999876543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.46 E-value=0.015 Score=50.23 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~ 348 (539)
.+|.|+|+|.+|...+..+...|. +|+++|+++++.+.++
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~ 70 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 70 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCccchhheecccccccccccccccccccccccc
Confidence 479999999999999988888997 7999999999988763
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.44 E-value=0.0029 Score=60.49 Aligned_cols=91 Identities=14% Similarity=0.046 Sum_probs=64.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~ 385 (539)
++++|||+|.++..-+..+.. .. .+|.+|++++++.+...++... .+ +... +..+++
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~-------~~-------------~~~~~~~~~a~ 185 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-------RG-------------ISASVQPAEEA 185 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-------TT-------------CCEEECCHHHH
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHh-------cC-------------Cccccchhhhh
Confidence 479999999999999888765 33 3899999999998887654321 11 1122 223678
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+||+|+.|++....+.. .+.+++++.|....+.
T Consensus 186 ~~aDiV~taT~s~~P~~~------~~~l~~G~hv~~iGs~ 219 (320)
T d1omoa_ 186 SRCDVLVTTTPSRKPVVK------AEWVEEGTHINAIGAD 219 (320)
T ss_dssp TSSSEEEECCCCSSCCBC------GGGCCTTCEEEECSCC
T ss_pred ccccEEEEeccCcccccc------hhhcCCCCeEeecCCc
Confidence 999999999986554422 2467889887765554
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.43 E-value=0.00076 Score=64.10 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=43.5
Q ss_pred HHHhCCHHHHhHHHHHHhhhhccCCCCCCcCCCCCCCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 271 KELVMLDTSRGLVHVFFAQRATSKVPNVTDIGLKPRGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 271 ~~~~~s~~~~~~~~af~~kr~~~~~~~~~~~~~~~~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
..|++.+|+.+.++-....-++. ..-+||+|||+|.-|.+.|..|+++|++|+++|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~------------~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 5 AECFQENDYEEFLEIARNGLKAT------------SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp GGGGCCTTHHHHHHHHHHCSCCC------------SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred HhhcCCccHHHHHHHHhcCCCCC------------CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46778888666555333221111 123589999999999999999999999999999764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.40 E-value=0.0025 Score=56.07 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=38.6
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~ 352 (539)
++|.|.| .|-+|..+|..|++.|.+|++++|++++++...+.+.
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~ 68 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN 68 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence 4788888 5999999999999999999999999999888766553
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=96.35 E-value=0.0047 Score=55.61 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=48.2
Q ss_pred eEEEEcCCCCcHH-HHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 310 KVAVIGGGLMGSG-IATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~-iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
+|||||+|.||.. +...+... +.+|+ ++|+++++++...+.. + ++. ..+...+|+ +.+
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~----------~-i~~-------~~~~~~~d~~ell 96 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY----------G-VDP-------RKIYDYSNFDKIA 96 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT----------T-CCG-------GGEECSSSGGGGG
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh----------c-ccc-------ccccccCchhhhc
Confidence 7999999999975 44555443 66777 8899999887764421 1 110 122334555 334
Q ss_pred --CCcCEEEEcccCChhH
Q 009256 386 --KDVDMVIEAVIESVPL 401 (539)
Q Consensus 386 --~~aDlVi~avpe~~~~ 401 (539)
.+.|+|++++|.+...
T Consensus 97 ~~~~iD~V~I~tp~~~H~ 114 (221)
T d1h6da1 97 KDPKIDAVYIILPNSLHA 114 (221)
T ss_dssp GCTTCCEEEECSCGGGHH
T ss_pred ccccceeeeeccchhhhh
Confidence 3689999999966643
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.35 E-value=0.0033 Score=55.66 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++|+|-|.|.+|..+|..|.+.|..|+++|.+++.+...
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA 66 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence 489999999999999999999999999999999877654
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.18 E-value=0.0055 Score=51.94 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=53.1
Q ss_pred eEEEEcCCCCcHHH-HHHHHHC-CCeEEE-EeCChHHHHHHHHHHHHHHHhhHhcCCCC-HHHHHHHhhcccccCCccCC
Q 009256 310 KVAVIGGGLMGSGI-ATAHILN-NIYVVL-KEVNSEYLLKGIKTIEANVRGLVTRGKLT-QDKANNALKMLKGVLDYSEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~i-A~~l~~~-G~~V~~-~d~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~ 385 (539)
||||||+|.+|..+ ...+.+. ..+++. .+++++....... .+.+.-. ....+..+ +....
T Consensus 6 rvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a---------~~~~i~~~~~~~d~l~-------~~~~~ 69 (157)
T d1nvmb1 6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARA---------QRMGVTTTYAGVEGLI-------KLPEF 69 (157)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHH---------HHTTCCEESSHHHHHH-------HSGGG
T ss_pred EEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhh---------hhcCCcccccceeeee-------ecccc
Confidence 79999999999864 5555444 346654 5888653221100 1111100 00000000 00234
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
.+.|+|+.++|......... ....++.++.++++++.
T Consensus 70 ~~iDiVf~ATpag~h~~~~~---~~~aa~~G~~VID~s~a 106 (157)
T d1nvmb1 70 ADIDFVFDATSASAHVQNEA---LLRQAKPGIRLIDLTPA 106 (157)
T ss_dssp GGEEEEEECSCHHHHHHHHH---HHHHHCTTCEEEECSTT
T ss_pred cccCEEEEcCCchhHHHhHH---HHHHHHcCCEEEEcccc
Confidence 68999999998655544333 22334678888988874
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=96.17 E-value=0.0012 Score=57.06 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=37.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
-+|.|||+|..|..-+.....-|-.|+++|.++++++++.+
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~ 70 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES 70 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHH
Confidence 38999999999999999888999999999999998887744
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.16 E-value=0.026 Score=52.07 Aligned_cols=168 Identities=14% Similarity=0.152 Sum_probs=104.4
Q ss_pred cCcEEEEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++.-.-|.-|+|.. -.++.+-.+...+.++.++.. ++-+|.|.-. +.|..|-+-+.. .......++
T Consensus 68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E~~----------g~~~~ga~~ 135 (271)
T d2a7sa2 68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEYN----------GIIRRGAKL 135 (271)
T ss_dssp SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHHH----------CHHHHHHHH
T ss_pred CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHHHh----------hHHHHHHHH
Confidence 34333344466653 689999999999999988765 5667777433 347666543321 122334466
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhh----hccCEEEeeCCceEeCCcccCCCCCCcchhhccc-cccCHH-------
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLP-RLVGLS------- 157 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-r~vG~~------- 157 (539)
+ .++.++..|.|+.|-|.++|+|.... +.+|+++|.++++++. +++-++...+- +.+...
T Consensus 136 ~-~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igv-------Mgpegaa~v~~~~~l~~~~~~~~~~ 207 (271)
T d2a7sa2 136 L-YAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDI 207 (271)
T ss_dssp H-HHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTTTTTTGGGTSSCCT
T ss_pred H-HHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEee-------cCHHHHHHHHHHHhhhhhhhcccch
Confidence 6 77999999999999999999875432 3479998888887764 22222222111 111100
Q ss_pred ---H-HHHHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHH
Q 009256 158 ---K-AIEMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALD 199 (539)
Q Consensus 158 ---~-a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 199 (539)
+ ....-..-+.-++-.|.+.|++|.|+++.+..+......+-
T Consensus 208 ~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~L~~~L~~ 253 (271)
T d2a7sa2 208 DKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRL 253 (271)
T ss_dssp TSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHH
Confidence 0 11111223334677888999999999998877665554443
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=96.15 E-value=0.034 Score=50.99 Aligned_cols=170 Identities=12% Similarity=0.092 Sum_probs=106.2
Q ss_pred cCcEEEEEeCCCCC--CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHH
Q 009256 12 NDGVAIITLINPPV--NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVEL 89 (539)
Q Consensus 12 ~~~v~~i~l~~p~~--Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (539)
++...-+.-|+|.. .+++.+-.+...+.++.++.. ++-.|.|.-. +.|..|.+-+. ....+...++
T Consensus 65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E~----------~g~~~~ga~~ 132 (264)
T d1vrga2 65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH----------GGIIRHGAKL 132 (264)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHH
T ss_pred cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHHH----------HhHHHHHHHH
Confidence 44433344567754 689999999999999988765 4666666432 34666664332 1123344566
Q ss_pred HHHHHHhCCCcEEEEEcCccccchhHhh----hccCEEEeeCCceEeCCcccCCCCCCcchhhccccc-c---CH--HHH
Q 009256 90 VVNLIEDCKKPIVAAVEGLALGGGLELA----MGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---GL--SKA 159 (539)
Q Consensus 90 ~~~~i~~~~~p~iaav~G~a~GgG~~la----l~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-v---G~--~~a 159 (539)
+ .++.++..|.|+.|-|.++|+|..-. +.+|++++-++++++. +.+-++...+-+. + .. .+-
T Consensus 133 ~-~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~v-------m~pe~aa~v~~~~~l~~~~~~~~~~ 204 (264)
T d1vrga2 133 L-YAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETR 204 (264)
T ss_dssp H-HHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHH
T ss_pred H-HHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEe-------cCHHHhhhhhhhhhhhhhhCcHHHH
Confidence 7 77999999999999999999876332 2588988888877764 3323333222211 0 00 000
Q ss_pred HHH--HHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHH
Q 009256 160 IEM--MLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIA 201 (539)
Q Consensus 160 ~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 201 (539)
.++ .+.-+.-++-.+.+.|++|.|+++.+.........+.+.
T Consensus 205 ~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~L~~~Le~l~ 248 (264)
T d1vrga2 205 RKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIMRALEVCE 248 (264)
T ss_dssp HHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHh
Confidence 110 111122367888899999999999988776665555443
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.012 Score=49.46 Aligned_cols=100 Identities=7% Similarity=-0.016 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCC-CHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKL-TQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
.+|-|+|.|.+|..++..|.+.|++|+++|.+++......+..... .-.+-.|-. +++... ...+..
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~-~~~vi~Gd~~d~~~L~-----------~a~i~~ 71 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-NADVIPGDSNDSSVLK-----------KAGIDR 71 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-TCEEEESCTTSHHHHH-----------HHTTTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC-CcEEEEccCcchHHHH-----------Hhcccc
Confidence 3699999999999999999999999999999987654433321100 000001111 110000 023678
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
||.||.+.++|..-.. +...+.+..+.-.+++-
T Consensus 72 a~~vi~~~~~d~~n~~-~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 72 CRAILALSDNDADNAF-VVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp CSEEEECSSCHHHHHH-HHHHHHHHTSSSCEEEE
T ss_pred CCEEEEccccHHHHHH-HHHHHHHhCCCCceEEE
Confidence 9999999886654322 22233444444345554
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=96.05 E-value=0.0015 Score=59.96 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=32.4
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
.+||.|||+|.-|...|..|+++|++|+++|++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999999999999998754
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.0018 Score=56.42 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=33.0
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
.-+||+|||+|.-|..-|..++++||+|++||.+++
T Consensus 42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 346899999999999999999999999999998864
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.04 E-value=0.014 Score=53.44 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=36.7
Q ss_pred ceEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|||++| |+ +-+|.++|..|++.|++|++.||+++.++...+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i 45 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI 45 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 578766 65 66999999999999999999999999888776654
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.99 E-value=0.0017 Score=52.29 Aligned_cols=35 Identities=31% Similarity=0.407 Sum_probs=32.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
++|.|||+|.+|.-+|..|.+.|.+|+++++.+.-
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i 57 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI 57 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence 58999999999999999999999999999987654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0016 Score=57.02 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=36.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|-+|.+++..|.+.|. ++++++|+++..+++..
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~ 60 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA 60 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH
Confidence 489999999999999999999987 89999999888777644
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.033 Score=47.37 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|+|.+|...+..+...|. +|+++|+++++++.++
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~ 68 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 68 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence 379999999999999999988998 7999999999988764
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.019 Score=49.62 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=49.2
Q ss_pred eEEEEcCCCCcHHH-HHHHHHCC--CeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 310 KVAVIGGGLMGSGI-ATAHILNN--IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 310 kI~iIG~G~mG~~i-A~~l~~~G--~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
||||||+|.||..+ ...+.+.+ ++|+ ++|+++++.+...+.. +.....+++ +.
T Consensus 5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~----------------------~~~~~~~~~~el 62 (181)
T d1zh8a1 5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV----------------------GNPAVFDSYEEL 62 (181)
T ss_dssp EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH----------------------SSCEEESCHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc----------------------cccceeeeeecc
Confidence 79999999999874 66666533 4655 7899998877654321 112234455 32
Q ss_pred C--CCcCEEEEcccCChhHHHHHHHHHH
Q 009256 385 F--KDVDMVIEAVIESVPLKQKIFSELE 410 (539)
Q Consensus 385 ~--~~aDlVi~avpe~~~~~~~~~~~l~ 410 (539)
+ .+.|+|++++|.+... ++.....
T Consensus 63 l~~~~id~v~I~tp~~~h~--~~~~~al 88 (181)
T d1zh8a1 63 LESGLVDAVDLTLPVELNL--PFIEKAL 88 (181)
T ss_dssp HHSSCCSEEEECCCGGGHH--HHHHHHH
T ss_pred ccccccceeeccccccccc--ccccccc
Confidence 3 4689999999865543 4444433
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.0014 Score=53.22 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+++.|||+|.+|.-+|..|++.|.+|+++++++.-
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~ 58 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI 58 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence 58999999999999999999999999999987644
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.83 E-value=0.0021 Score=56.22 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (539)
+||+|||+|..|...|..|+++|+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 589999999999999999999999 5999998764
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0046 Score=51.71 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=56.8
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHC-CC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc--cC
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG--VL 380 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~ 380 (539)
|+||||||+ |..|.-+...|+++ .+ +++.+..+...-.. +..+. ..+.. ..
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~------------~~~~~----------~~~~~~~~~ 58 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA------------PSFGG----------TTGTLQDAF 58 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC------------CGGGT----------CCCBCEETT
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc------------ccccC----------Cceeeeccc
Confidence 569999997 99999999877665 33 56666554321100 00000 01111 11
Q ss_pred CccCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 381 DYSEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 381 ~~~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
+.+.+.++|++|.|+|.+. -+.+..++.+ ...+++|++++|.....
T Consensus 59 ~~~~~~~~DivF~a~~~~~--s~~~~~~~~~-~g~~~~VID~Ss~fR~~ 104 (146)
T d1t4ba1 59 DLEALKALDIIVTCQGGDY--TNEIYPKLRE-SGWQGYWIDAASSLRMK 104 (146)
T ss_dssp CHHHHHTCSEEEECSCHHH--HHHHHHHHHH-TTCCCEEEECSSTTTTC
T ss_pred chhhhhcCcEEEEecCchH--HHHhhHHHHh-cCCCeecccCCcccccC
Confidence 2245789999999998444 3344444443 23446788988876654
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.79 E-value=0.031 Score=51.19 Aligned_cols=163 Identities=15% Similarity=0.179 Sum_probs=103.4
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.-|+|. ..+++.+-.+...+.++.++.. ++-+|.|.-. +.|..|.+-+. ....+...+++ .++.
T Consensus 69 via~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pGf~~G~~~E~----------~g~~~~ga~~~-~a~a 135 (263)
T d1xnya2 69 IVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PGFLPGVDQEH----------DGIIRRGAKLI-FAYA 135 (263)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred EEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cccccchhHHH----------HhHHHHHHHHH-HHHH
Confidence 4446664 2799999999999999988875 4666666433 34666664331 11233444666 7799
Q ss_pred hCCCcEEEEEcCccccchhHhhh----ccCEEEeeCCceEeCCcccCCCCCCcchhhccccccC-----------HHHHH
Q 009256 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVG-----------LSKAI 160 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG-----------~~~a~ 160 (539)
++..|.|+.|-|.++|||..... ..|+++|.+++.++. +++-++...+-+.-. .....
T Consensus 136 ~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gv-------m~pe~aa~il~~~~~~~a~~~~~~~~~~~~~ 208 (263)
T d1xnya2 136 EATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATRARLIQ 208 (263)
T ss_dssp HCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHSCCTTCSSSHHHHHH
T ss_pred ccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhc-------cCHHHHHHHHHHHHHhhhccchHHHHHHHHH
Confidence 99999999999999998765433 368888888887764 332333322211100 00011
Q ss_pred HHHHcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHh
Q 009256 161 EMMLLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (539)
Q Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (539)
++. -+..++..+...|+||.|+++.+.........+.+..
T Consensus 209 ~~~--~~~~~p~~aA~~g~iD~VIdP~dTR~~L~~~L~~l~~ 248 (263)
T d1xnya2 209 EYE--DALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRT 248 (263)
T ss_dssp HHH--HHHSSSHHHHHHTSSSEECCGGGHHHHHHHHHHHHTT
T ss_pred HHH--HHhcCHHHHHHcccCCcccCHHHHHHHHHHHHHHHhc
Confidence 111 1123567788899999999999987766665555543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0016 Score=52.33 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=32.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
++|.|||+|..|.-+|..|.+.|++|+++++.+.-
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~ 56 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP 56 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence 48999999999999999999999999999997643
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.67 E-value=0.0018 Score=52.20 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
++|.|||+|.+|.-+|..|++.|.+|+++++.+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence 5899999999999999999999999999998654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.67 E-value=0.0024 Score=59.14 Aligned_cols=31 Identities=39% Similarity=0.496 Sum_probs=29.7
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|.|||+|.+|.+.|..|+++|++|+++|+++
T Consensus 7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 9999999999999999999999999999864
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=95.58 E-value=0.039 Score=50.53 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=103.2
Q ss_pred EEeCCCC--CCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHH
Q 009256 18 ITLINPP--VNALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIE 95 (539)
Q Consensus 18 i~l~~p~--~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (539)
|.=|+|. ..+++.+-.+...+.++.++.. ++-+|.|.=. ..|..|-+-+. ....+...+++ .++.
T Consensus 71 vian~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E~----------~g~i~~ga~~~-~a~a 137 (264)
T d1on3a2 71 IVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY----------GGIIRHGAKML-YAYS 137 (264)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH----------TTHHHHHHHHH-HHHH
T ss_pred EEeccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHHH----------HHHHHHHHHHH-HHHH
Confidence 3346664 3799999999999999888764 5667777432 34776665332 11233445666 7799
Q ss_pred hCCCcEEEEEcCccccchhHhhh----ccCEEEeeCCceEeCCcccCCCCCCcchhhccccc-c---CH---HHHHHH-H
Q 009256 96 DCKKPIVAAVEGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRL-V---GL---SKAIEM-M 163 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-v---G~---~~a~~l-~ 163 (539)
++.+|.|+.|-|.++|+|..-.. ..|+++|-+++.++ .+++-|+...+-+. + .. .+...+ -
T Consensus 138 ~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e 210 (264)
T d1on3a2 138 EATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKIEE 210 (264)
T ss_dssp HCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhhhhHHHHHH
Confidence 99999999999999998764433 46777777766665 44444443332221 0 00 001000 1
Q ss_pred HcCCCCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHh
Q 009256 164 LLSKSITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAA 202 (539)
Q Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~ 202 (539)
..-+.-++-.|.+.|+||.|+++.+.........+.+..
T Consensus 211 ~~~~~~~p~~aA~~g~iD~VIdP~eTR~~L~~aLe~~~~ 249 (264)
T d1on3a2 211 YQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYAT 249 (264)
T ss_dssp HHHHHSSHHHHHHTTSSSEECCGGGHHHHHHHHHHHGGG
T ss_pred HHHHhcCHHHHHHcCCCCeeECHHHHHHHHHHHHHHHhc
Confidence 111223577888899999999998877666555555543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.51 E-value=0.0023 Score=47.20 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=32.1
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|++|+|+|.|..|.-++..-.+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 57999999999999999999999999999998754
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=95.49 E-value=0.0074 Score=57.73 Aligned_cols=94 Identities=18% Similarity=0.166 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHIL-NNI-YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 385 (539)
++++|||+|.++..-+..+.. .+. +|.+||+++++.+++.+++. +... -.+...++. +++
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~-------~~~g----------~~v~~~~s~~eav 191 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLK-------EYSG----------LTIRRASSVAEAV 191 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHT-------TCTT----------CEEEECSSHHHHH
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhh-------hccC----------CCceecCCHHHHH
Confidence 479999999999988887754 454 89999999999888765431 1100 124446666 789
Q ss_pred CCcCEEEEcccCCh--hHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 386 KDVDMVIEAVIESV--PLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 386 ~~aDlVi~avpe~~--~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
++||+|+.+.+... .+.. .+.+++++.|....+.
T Consensus 192 ~~ADIi~t~Tas~s~~Pv~~------~~~l~pG~hI~aiGs~ 227 (340)
T d1x7da_ 192 KGVDIITTVTADKAYATIIT------PDMLEPGMHLNAVGGD 227 (340)
T ss_dssp TTCSEEEECCCCSSEEEEEC------GGGCCTTCEEEECSCC
T ss_pred hcCCceeeccccCCCCcccc------hhhcCCCCEEeecccc
Confidence 99999998885431 1111 2467889887655543
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.47 E-value=0.0052 Score=52.85 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=44.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SEFK 386 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 386 (539)
||+|||+|.||...+..+.+. +++++ ++|++++.... .......+. +...
T Consensus 5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 57 (170)
T d1f06a1 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---------------------------TPVFDVADVDKHAD 57 (170)
T ss_dssp EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---------------------------SCEEEGGGGGGTTT
T ss_pred eEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc---------------------------cccccchhhhhhcc
Confidence 799999999999999988764 56665 66887643111 112223333 4567
Q ss_pred CcCEEEEcccCChh
Q 009256 387 DVDMVIEAVIESVP 400 (539)
Q Consensus 387 ~aDlVi~avpe~~~ 400 (539)
+.|+|++|.|....
T Consensus 58 ~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 58 DVDVLFLCMGSATD 71 (170)
T ss_dssp TCSEEEECSCTTTH
T ss_pred ccceEEEeCCCccc
Confidence 89999999986653
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.47 E-value=0.033 Score=50.98 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=36.4
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
||++| | .+-||.++|..|++.|++|++.+++++.++...+.+
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l 46 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKEL 46 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 78877 5 577999999999999999999999999888876654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.01 Score=46.97 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
.||+|+|+|..|.-++....+-|++|.++|.+++
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 4899999999999999999999999999999875
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.45 E-value=0.0051 Score=49.80 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=32.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
.++|.|||+|.+|.-+|..|++.|++|+++++.+.-
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~ 65 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRP 65 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcc
Confidence 358999999999999999999999999999987643
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.38 E-value=0.0033 Score=50.70 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=32.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
++|.|||+|.+|.-+|..|++.|.+|+++.+++.-
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l 57 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF 57 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence 68999999999999999999999999999987543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.36 E-value=0.039 Score=46.60 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=35.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|+|.+|...+..+...|.+|+++|+++++++.++
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~ 68 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR 68 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence 3799999999999999888889999999999999887763
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.34 E-value=0.0075 Score=51.83 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=47.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-CeEEEE-eCChHHHHHHHHHHHHHHHhhHhc-CCCCHHHHHHHhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLK-EVNSEYLLKGIKTIEANVRGLVTR-GKLTQDKANNALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~-~ 383 (539)
|.+|||-|.|.+|..+.+.+..++ .+|+.+ |+++....... +...... +.............+....+. +
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~ 74 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMA------LKKGYDLYVAIPERVKLFEKAGIEVAGTVDD 74 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHH------HHTTCCEEESSGGGHHHHHHTTCCCCEEHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHH------HhcCCceEecccccceeecccCcccCCChhH
Confidence 579999999999999999887775 566655 55543311110 0000000 111111111111223333333 4
Q ss_pred CCCCcCEEEEcccCCh
Q 009256 384 EFKDVDMVIEAVIESV 399 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~ 399 (539)
...++|+||||.+...
T Consensus 75 ~~~~vDvViEcTG~f~ 90 (171)
T d1cf2o1 75 MLDEADIVIDCTPEGI 90 (171)
T ss_dssp HHHTCSEEEECCSTTH
T ss_pred hhcCCCEEEEccCCCC
Confidence 4678999999998554
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.34 E-value=0.003 Score=51.38 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=31.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
++|.|||+|.+|.-+|..|.+.|.+|+++++++.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 5899999999999999999999999999999754
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.27 E-value=0.057 Score=50.23 Aligned_cols=42 Identities=29% Similarity=0.321 Sum_probs=36.2
Q ss_pred eEEEE--cCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|++|| |.|-+|.++|..|++.|++|++.|++.++++...+++
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l 69 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI 69 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 66666 5689999999999999999999999999888776654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.25 E-value=0.042 Score=50.02 Aligned_cols=43 Identities=21% Similarity=0.154 Sum_probs=36.4
Q ss_pred ceEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
.||++| |+ +-+|.++|..|++.|++|+++|++++.++...+.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l 54 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI 54 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 477766 54 77999999999999999999999999888776544
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.25 E-value=0.0097 Score=51.43 Aligned_cols=85 Identities=20% Similarity=0.153 Sum_probs=48.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCC-CeEEEE-eCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHH-HhhcccccCCc-c
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNN-IYVVLK-EVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANN-ALKMLKGVLDY-S 383 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~-~ 383 (539)
|-||||.|.|.||+.+.+.+..++ ++|+.+ |+++........ ......+ ...+.... .-..+....+. +
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~i~v~g~~~~ 73 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAH------RRGIRIY-VPQQSIKKFEESGIPVAGTVED 73 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHH------HTTCCEE-CCGGGHHHHHTTTCCCCCCHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhc------ccCccee-ccCccceeccccceecCCchhh
Confidence 348999999999999999998764 677765 565543222111 0000001 11111111 11223333344 4
Q ss_pred CCCCcCEEEEcccCCh
Q 009256 384 EFKDVDMVIEAVIESV 399 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~ 399 (539)
...++|+||||.|...
T Consensus 74 ~~~~vDiViecTG~f~ 89 (178)
T d1b7go1 74 LIKTSDIVVDTTPNGV 89 (178)
T ss_dssp HHHHCSEEEECCSTTH
T ss_pred hhhcCCEEEECCCCcC
Confidence 4578999999998543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.039 Score=51.66 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=35.3
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| | .+-+|.++|..|++.|++|++.+|+++.++...+++
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el 56 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL 56 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 6 467999999999999999999999999988876654
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.18 E-value=0.0037 Score=58.36 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=31.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+|.|||+|.-|..+|..|+++|++|+++|++++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 6999999999999999999999999999998753
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.17 E-value=0.0066 Score=49.05 Aligned_cols=32 Identities=16% Similarity=0.038 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
++++|||+|.+|.-+|..|.+.|.+|+++.++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 47999999999999999999999999999876
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.09 E-value=0.0048 Score=57.23 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|||.|||+|.-|.+-|..|+++|++|+++|.++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999999999999999999999999999754
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.09 E-value=0.014 Score=53.41 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=35.2
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~ 352 (539)
.+-|.|+ +-||.++|..|++.|++|++.|++++.+++..+++.
T Consensus 7 ~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~ 50 (251)
T d1vl8a_ 7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT 50 (251)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 3445565 679999999999999999999999998887766543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.07 E-value=0.0063 Score=49.16 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
++|.|||+|.+|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998765
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.06 E-value=0.0042 Score=57.53 Aligned_cols=33 Identities=33% Similarity=0.434 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
++|+|||+|.-|.+.|..|+++|++|++++.++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 379999999999999999999999999999863
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.02 E-value=0.0035 Score=50.14 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=32.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+++.|||+|..|.-+|..|.+.|++|+++++.+.-
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i 56 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI 56 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence 58999999999999999999999999999987654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.00 E-value=0.052 Score=49.63 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=35.0
Q ss_pred eEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| |+ +-||.++|..|++.|++|++.|++++.++...+++
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 52 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW 52 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45544 65 66999999999999999999999999988876654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.98 E-value=0.0032 Score=51.06 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=33.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
+++.|||+|.+|.-+|..|.+.|.+|+++.+++..+.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~ 62 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP 62 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc
Confidence 5899999999999999999999999999998776543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.94 E-value=0.0062 Score=57.90 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=31.7
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
.+||+|||+|.-|.+.|..|+++|++|++++.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 3689999999999999999999999999999775
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.086 Score=47.66 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=35.2
Q ss_pred eEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| |+ +-+|..+|..|+++|.+|+++|+++++++...+++
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~ 51 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC 51 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45544 76 55999999999999999999999999988876654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.87 E-value=0.063 Score=49.02 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=35.1
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++-|.| .+-||.++|..|++.|++|++.+++++.++...+.
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~ 49 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEI 49 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 566667 57799999999999999999999999888876554
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.034 Score=52.31 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=56.4
Q ss_pred hCCCcEEEEEcCccccchhHhhhccCEEEeeCCceEeCCcccCCCCCCcchhhccccccCHHHHHHHHHcCCCC--CHHH
Q 009256 96 DCKKPIVAAVEGLALGGGLELAMGCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIEMMLLSKSI--TSEE 173 (539)
Q Consensus 96 ~~~~p~iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l~g~~~--~a~e 173 (539)
.-..|+|++|.|.|+|+|..++-.||++|+.+++.+.+. |+ .+.+. .+|+.+ +.+|
T Consensus 238 ~~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt--------------------Gp-~~l~~-~lG~eVy~s~~e 295 (333)
T d1uyra1 238 YHDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT--------------------GA-PAINK-MLGREVYTSNLQ 295 (333)
T ss_dssp HHHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS--------------------CH-HHHHH-HSSSCCCSCTHH
T ss_pred cCCCCEEEEEeCCccccceeecccccEEEEeCCceEEee--------------------CH-HHHHH-hcCccccCChhH
Confidence 356999999999999999999999999999998766543 11 11121 245544 3333
Q ss_pred ------HHHcCCcceecCcchHHHHHHHHHHHHHhc
Q 009256 174 ------GWKLGLIDAVVTSEELLKVSRLWALDIAAR 203 (539)
Q Consensus 174 ------A~~~Glv~~vv~~~~l~~~a~~~a~~la~~ 203 (539)
..+-|++|.++++| .++.+.+.++.+.
T Consensus 296 LGG~~i~~~nGv~h~~a~dd---~eai~~i~~~LSy 328 (333)
T d1uyra1 296 LGGTQIMYNNGVSHLTAVDD---LAGVEKIVEWMSY 328 (333)
T ss_dssp HHSHHHHHHHTSSSEEESSH---HHHHHHHHHHHTT
T ss_pred hCCHhHHhhCCCceEEeCCH---HHHHHHHHHHHhh
Confidence 34689999999876 2334444444443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.84 E-value=0.012 Score=54.32 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=37.5
Q ss_pred eEEEE--cCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q 009256 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIE 352 (539)
Q Consensus 310 kI~iI--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~ 352 (539)
|+++| |.+-+|.++|..|++.|++|++.+|+++.+++..+++.
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~ 50 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQIL 50 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 67777 46889999999999999999999999999888776653
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.83 E-value=0.0058 Score=49.14 Aligned_cols=36 Identities=14% Similarity=0.071 Sum_probs=32.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
++|+|||+|.+|.-+|..|++.|.+|+++++.+.-+
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l 58 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK 58 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence 589999999999999999999999999999876543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.79 E-value=0.018 Score=49.45 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=34.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~ 348 (539)
+|.|+|+|.+|...+..+...|. +|++.|+++++.+.+.
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~ 69 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK 69 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence 79999999999999888888896 7999999999887764
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=94.78 E-value=0.043 Score=52.25 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=35.4
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
-++|.|.|+ |.+|+.++..|+++|++|++..|+.+..+...
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~ 52 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQ 52 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHH
Confidence 468999985 99999999999999999999999987765543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.73 E-value=0.053 Score=49.11 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=33.6
Q ss_pred eEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
|+++| |+ +-+|.++|..|++.|++|++.|+++++++...+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 48 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA 48 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 55555 65 679999999999999999999999988777644
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.73 E-value=0.0098 Score=48.77 Aligned_cols=36 Identities=33% Similarity=0.575 Sum_probs=32.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
++|.|||+|.+|.-+|..|.+.|++|+++++++.-+
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l 71 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL 71 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccc
Confidence 489999999999999999999999999999876543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.071 Score=48.62 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=35.9
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| | .+-+|.++|..|++.|++|+++++++++++.+.+++
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l 54 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAEC 54 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 56655 5 588999999999999999999999999988876654
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.61 E-value=0.0074 Score=57.69 Aligned_cols=36 Identities=33% Similarity=0.376 Sum_probs=32.1
Q ss_pred CcceEEEEcCCCCcHHHHHHHHHCC--CeEEEEeCChH
Q 009256 307 GVRKVAVIGGGLMGSGIATAHILNN--IYVVLKEVNSE 342 (539)
Q Consensus 307 ~~~kI~iIG~G~mG~~iA~~l~~~G--~~V~~~d~~~~ 342 (539)
.|+||+|||+|.-|...|..|++.| ++|++++++..
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4789999999999999999998876 69999999853
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.069 Score=49.00 Aligned_cols=41 Identities=27% Similarity=0.209 Sum_probs=34.5
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++.|.|+ +-+|.++|..|++.|++|++.+|+++.++...++
T Consensus 16 ~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~ 57 (269)
T d1xu9a_ 16 KVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH 57 (269)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 4545565 5699999999999999999999999998887554
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.59 E-value=0.069 Score=48.77 Aligned_cols=42 Identities=29% Similarity=0.333 Sum_probs=34.8
Q ss_pred eEE-EEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~-iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|++ |.|+ +-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV 49 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 444 4565 66999999999999999999999999888776543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.57 E-value=0.057 Score=49.25 Aligned_cols=42 Identities=29% Similarity=0.418 Sum_probs=36.1
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| | .+-+|.++|..|++.|++|++.+++++.+++..+++
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l 55 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 66666 4 577999999999999999999999999988876654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.031 Score=47.43 Aligned_cols=39 Identities=21% Similarity=0.064 Sum_probs=34.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++|.|+|+|.+|...+..+...|.+|++.|.++++.+.+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a 70 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA 70 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence 479999999999998888888999999999999887655
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.46 E-value=0.051 Score=49.54 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=34.4
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
|+++| | .+-+|.++|..|++.|++|++.|++++.+++..++
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~ 49 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE 49 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 56666 5 46799999999999999999999999888776543
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.031 Score=47.51 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=54.3
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+. .|.++|..|++.|..|++++.+...+. +.+++
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~-------------------------------------~~~~~ 82 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLD-------------------------------------EEVNK 82 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHH-------------------------------------HHHTT
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccccHH-------------------------------------HHHhh
Confidence 4799999755 799999999999999999986543222 23568
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+|+||.++...--++ .+.+++++++++...+
T Consensus 83 aDivi~a~G~~~~i~-------~~~vk~g~iviDvgi~ 113 (170)
T d1a4ia1 83 GDILVVATGQPEMVK-------GEWIKPGAIVIDCGIN 113 (170)
T ss_dssp CSEEEECCCCTTCBC-------GGGSCTTCEEEECCCB
T ss_pred ccchhhccccccccc-------cccccCCCeEeccCcc
Confidence 999999986433222 3468899998876544
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.29 E-value=0.1 Score=42.38 Aligned_cols=81 Identities=12% Similarity=0.099 Sum_probs=50.3
Q ss_pred eEEEEc-CCCCcHHHHHHHHH-CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCC
Q 009256 310 KVAVIG-GGLMGSGIATAHIL-NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFK 386 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~-~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 386 (539)
||+|+| .|.||..++..+.+ .++++. .+|+.... .. -...
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~-~~------------------------------------~~~~ 43 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL-SL------------------------------------LTDG 43 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT-HH------------------------------------HHTT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch-hh------------------------------------hccc
Confidence 799999 59999999988766 456655 34543110 00 0124
Q ss_pred CcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHHh
Q 009256 387 DVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIVG 432 (539)
Q Consensus 387 ~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i~ 432 (539)
++|+||+-.. ++.....++.. +..+..++..|++.+..++.
T Consensus 44 ~~DvvIDFS~--p~~~~~~~~~~---~~~~~~~ViGTTG~~~~~~~ 84 (135)
T d1yl7a1 44 NTEVVIDFTH--PDVVMGNLEFL---IDNGIHAVVGTTGFTAERFQ 84 (135)
T ss_dssp TCSEEEECCC--TTTHHHHHHHH---HHTTCEEEECCCCCCHHHHH
T ss_pred cCCEEEEccc--HHHHHHHHHHH---HhcCCCEEEeccccchhHHH
Confidence 6899998765 33333444333 33456677788888876543
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.28 E-value=0.023 Score=48.62 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHH-HHhhcccccCCc-cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKAN-NALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~ 384 (539)
.||||.|.|.||..+.+.+..+. .+|+ +.|+++......... .............. .....+....+. +.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKE------LGIPVYAASEEFIPRFEKEGFEVAGTLNDL 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHH------TTCCEEESSGGGHHHHHHHTCCCSCBHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhh------cCceeecccccceeeecccCccccchhhhh
Confidence 38999999999999999988754 5665 446665432221110 00000001111111 111223333334 44
Q ss_pred CCCcCEEEEcccCCh
Q 009256 385 FKDVDMVIEAVIESV 399 (539)
Q Consensus 385 ~~~aDlVi~avpe~~ 399 (539)
..++|+||||.+-..
T Consensus 77 ~~~vDvViEcTG~f~ 91 (172)
T d2czca2 77 LEKVDIIVDATPGGI 91 (172)
T ss_dssp HTTCSEEEECCSTTH
T ss_pred hccCCEEEECCCCCC
Confidence 678999999998544
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.27 E-value=0.09 Score=47.95 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=34.9
Q ss_pred eEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|++|| |+ +-||.++|..|++.|++|++.|++++.++...+.+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~ 48 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV 48 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45555 65 67999999999999999999999999888776544
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.25 E-value=0.0099 Score=55.70 Aligned_cols=32 Identities=16% Similarity=0.491 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
+|.|||+|.+|.+.|..|+++|. +|+++|+++
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 69999999999999999999996 799999874
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.23 E-value=0.0081 Score=48.74 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=32.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
+++.|||+|.+|.-+|..|.+.|.+|+++++.+.-+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il 62 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM 62 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccc
Confidence 589999999999999999999999999998876543
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.098 Score=47.19 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=34.7
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
|+++| | .+-+|.++|..|++.|++|++.|++++.++...+.
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~ 47 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY 47 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 56666 5 57799999999999999999999999888776543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=94.14 E-value=0.017 Score=52.53 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=33.3
Q ss_pred eEE-EEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 310 KVA-VIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~-iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
|++ |.|+ +-+|.++|..|++.|++|++.|++++.++...+
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~ 47 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE 47 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 444 5565 669999999999999999999999988777644
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.1 Score=47.31 Aligned_cols=41 Identities=29% Similarity=0.310 Sum_probs=34.4
Q ss_pred eEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
|+++| |+ +-+|.++|..|++.|.+|++.|++++.++...+.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~ 46 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAA 46 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 45555 65 6699999999999999999999999988876554
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.10 E-value=0.011 Score=53.30 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
+|.|||+|.-|.+.|..|+++|+ +|++++.++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 69999999999999999999996 799999864
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.014 Score=54.71 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
.||.|||+|.=|.+-|..|+++|++|++++.+.
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 479999999999999999999999999998763
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=94.05 E-value=0.019 Score=53.03 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=31.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+||.|+|+ |.+|+.++..|.++||+|++++|++..
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 58999996 999999999999999999999997654
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.96 E-value=0.0028 Score=57.25 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEE
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVL 336 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~ 336 (539)
+||+|||+|.+|.+.|..|+++|++|++
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCceE
Confidence 4799999999999999999999986543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.95 E-value=0.14 Score=43.65 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=36.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
.+|.|+|+|.+|...+..+...|. +|+++|+++++++.+++
T Consensus 31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 31 STCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence 379999999999999999999995 89999999999888754
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.93 E-value=0.065 Score=47.91 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=37.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|+|-|.|++|..+|..|.+.|..|++.|.++..++....
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~ 80 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA 80 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHH
Confidence 48999999999999999999999999999999988776543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.13 Score=46.68 Aligned_cols=40 Identities=28% Similarity=0.276 Sum_probs=33.3
Q ss_pred eEEE-Ec-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 310 KVAV-IG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~i-IG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
|+++ .| .+-||.++|..|++.|++|++.|++++.++.+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~ 48 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ 48 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4554 46 5889999999999999999999999988776643
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=93.87 E-value=0.013 Score=54.00 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
|.|||+|..|.+.|..|+++|++|+++|+.
T Consensus 6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 889999999999999999999999999975
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.82 E-value=0.023 Score=51.10 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=33.5
Q ss_pred CCcceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 306 RGVRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 306 ~~~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
..-++|.|||+|.-|...|..+++.|++|++++.+++
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence 3457899999999999999999999999999998764
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=93.80 E-value=0.027 Score=47.68 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=51.6
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKD 387 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 387 (539)
++|.|||-+. +|.+++..|.+.|..|++++.....+. +.+++
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~-------------------------------------~~~~~ 80 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR-------------------------------------HHVEN 80 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH-------------------------------------HHHHH
T ss_pred ceEEEEeccccccHHHHHHHHHhhccccccccccchhH-------------------------------------HHHhh
Confidence 4899999755 799999999999999999976543222 22567
Q ss_pred cCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecC
Q 009256 388 VDMVIEAVIESVPLKQKIFSELEKACPPHCILATNT 423 (539)
Q Consensus 388 aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~t 423 (539)
+|+||.++.-.--++ .+.+++++++++..
T Consensus 81 ADivI~a~G~p~~i~-------~~~vk~g~vvIDvG 109 (166)
T d1b0aa1 81 ADLLIVAVGKPGFIP-------GDWIKEGAIVIDVG 109 (166)
T ss_dssp CSEEEECSCCTTCBC-------TTTSCTTCEEEECC
T ss_pred hhHhhhhccCccccc-------ccccCCCcEEEecC
Confidence 999999986322221 24578888888654
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=93.77 E-value=0.43 Score=44.08 Aligned_cols=161 Identities=9% Similarity=0.077 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE
Q 009256 26 NALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV 105 (539)
Q Consensus 26 Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav 105 (539)
-+|+.+-.+...+.++.++.. .+-+|.|.= ...|-.|-+-+. ....+...+++ .++.++.+|.|+.|
T Consensus 97 G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D-~pGf~~g~~~E~----------~g~~r~ga~~~-~a~~~~~VP~isvi 163 (299)
T d1pixa3 97 GKLYRQGLVKMNEFVTLCARD-RLPIVWIQD-TTGIDVGNDAEK----------AELLGLGQSLI-YSIQTSHIPQFEIT 163 (299)
T ss_dssp TEECHHHHHHHHHHHHHHHHT-TCCEEEEEC-CCEECCSHHHHH----------TTHHHHHHHHH-HHHHTCCCCEEEEE
T ss_pred CccCHHHHHHHHHHHHHHHHc-CCeEEEEEe-CCCcccchHHHh----------hhHHHHHHHHH-HHHHhhcceeEEEE
Confidence 468899999999999988765 455666642 234666654321 11233444666 67999999999999
Q ss_pred cCccccchhHhhh----ccCEEEeeCCceEeCCcccCCCCCCcchhhcccc-ccCHH------------HHHHHHH-cCC
Q 009256 106 EGLALGGGLELAM----GCHARIAAPKTQLGLPELTLGVIPGFGGTQRLPR-LVGLS------------KAIEMML-LSK 167 (539)
Q Consensus 106 ~G~a~GgG~~lal----~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~vG~~------------~a~~l~l-~g~ 167 (539)
-|.++|||..... ..|++++ +..|..++|.+++-++...+-+ .+... +-++++. .-+
T Consensus 164 ~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~~~~ 238 (299)
T d1pixa3 164 LRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQAFYT 238 (299)
T ss_dssp CSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred ecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999998854332 2343321 1234444555554444443321 11100 0011110 012
Q ss_pred CCCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhcC
Q 009256 168 SITSEEGWKLGLIDAVVTSEELLKVSRLWALDIAARR 204 (539)
Q Consensus 168 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 204 (539)
..++-.+.+.|+||.|+++.+.......+.+.+.+.+
T Consensus 239 ~~sp~~aAs~~~iD~IIDP~dTR~~L~~~Le~~~~~~ 275 (299)
T d1pixa3 239 KSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAAYQNP 275 (299)
T ss_dssp TTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHHTTSC
T ss_pred hcCHHHHHHhCCcCeeECHHHHHHHHHHHHHHHHhCc
Confidence 3577888899999999999998887777777665554
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.04 Score=49.94 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=34.6
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++-|.|+ +-+|.++|..|++.|++|++.|++++.++...++
T Consensus 9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~ 50 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE 50 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence 4556664 7799999999999999999999999988876554
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.70 E-value=0.044 Score=44.39 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=56.0
Q ss_pred ceEEEEcC----CCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 309 RKVAVIGG----GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 309 ~kI~iIG~----G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
++|+|||+ |.+|..+.++|.+.| ++|+.+++..+.+ ..+....+++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----------------------------~G~~~y~sl~ 59 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----------------------------QGVKAYKSVK 59 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----------------------------TTEECBSSTT
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----------------------------CCeEeecchh
Confidence 58999997 778888888887766 6898888764321 2344555664
Q ss_pred CC-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 384 EF-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 384 ~~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
++ ...|+++.++| .+....++++..+.=-+..++.
T Consensus 60 dlp~~vDlvvi~vp--~~~~~~~~~~~~~~g~~~~vi~ 95 (129)
T d2csua1 60 DIPDEIDLAIIVVP--KRFVKDTLIQCGEKGVKGVVII 95 (129)
T ss_dssp SCSSCCSEEEECSC--HHHHHHHHHHHHHHTCCEEEEC
T ss_pred hcCCCCceEEEecC--hHHhHHHHHHHHHcCCCEEEEe
Confidence 44 46899999998 6556677887665533434443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=93.68 E-value=0.13 Score=46.66 Aligned_cols=40 Identities=33% Similarity=0.305 Sum_probs=34.2
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
|+++| | .+-||.++|..|++.|++|++.+++++.++...+
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 48 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK 48 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 56666 5 5779999999999999999999999988777654
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=93.64 E-value=0.055 Score=44.85 Aligned_cols=98 Identities=21% Similarity=0.274 Sum_probs=55.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCcc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-NI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYS 383 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-G~---~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 383 (539)
+||||||+ |..|.-+.+.|.++ .| ++..+.-+... .+. ...+.- ...+....+.+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~-gk~-----------~~~~~~--------~~~~~~~~~~~ 60 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG-VPA-----------PNFGKD--------AGMLHDAFDIE 60 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS-SBC-----------CCSSSC--------CCBCEETTCHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc-ccc-----------cccCCc--------ceeeecccchh
Confidence 47999996 99999999877754 33 55544433211 000 000000 00011112224
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
.++++|+||.|+|.+. -+.+..++.+. ..+++|+++++.....
T Consensus 61 ~~~~~DvvF~alp~~~--s~~~~~~l~~~-g~~~~VIDlSsdfR~~ 103 (147)
T d1mb4a1 61 SLKQLDAVITCQGGSY--TEKVYPALRQA-GWKGYWIDAASTLRMD 103 (147)
T ss_dssp HHTTCSEEEECSCHHH--HHHHHHHHHHT-TCCSEEEESSSTTTTC
T ss_pred hhccccEEEEecCchH--HHHHhHHHHHc-CCceEEEeCCcccccc
Confidence 5789999999999444 44555555442 3346788988876644
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=93.59 E-value=0.055 Score=48.73 Aligned_cols=73 Identities=23% Similarity=0.193 Sum_probs=45.9
Q ss_pred ceEEEEcCCCCcHHHHH----HHHH--CCCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCC
Q 009256 309 RKVAVIGGGLMGSGIAT----AHIL--NNIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLD 381 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~----~l~~--~G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (539)
-||||||+|.+|+-++. .+.+ .+++|+ ++|+++++.+...+.. + + ......++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~----------~-~---------~~~~~~~~ 76 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL----------Q-L---------KHATGFDS 76 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT----------T-C---------TTCEEESC
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc----------c-c---------ccceeecc
Confidence 48999999998765554 2333 356777 7899998877764421 1 0 11122334
Q ss_pred cc-CC--CCcCEEEEcccCChhH
Q 009256 382 YS-EF--KDVDMVIEAVIESVPL 401 (539)
Q Consensus 382 ~~-~~--~~aDlVi~avpe~~~~ 401 (539)
++ .+ .+.|+|++++|.....
T Consensus 77 ~~~l~~~~~iD~V~i~tp~~~h~ 99 (237)
T d2nvwa1 77 LESFAQYKDIDMIVVSVKVPEHY 99 (237)
T ss_dssp HHHHHHCTTCSEEEECSCHHHHH
T ss_pred hhhcccccccceeeccCCCcchh
Confidence 42 22 4689999999955543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.013 Score=54.98 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=31.3
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|..|.|||+|.-|.+.|..|++.|++|++++.+.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4579999999999999999999999999999764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.55 E-value=0.043 Score=46.89 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=33.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCe-EEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIY-VVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~-V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|.+|...+..+...|.. |++.|.++++++.+++
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence 4799999999999999888777874 5677999988887643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.54 E-value=0.14 Score=46.92 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=35.5
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| | .+-+|.++|..|++.|++|++.|++++.++...+.+
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i 48 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI 48 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 45555 5 577999999999999999999999999988876654
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=0.028 Score=47.56 Aligned_cols=102 Identities=17% Similarity=0.090 Sum_probs=57.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHC-CCeEE-EEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILN-NIYVV-LKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
.||+|+|+ |.||+.++..+.+. +++++ .+|+.....-. ...+.+... ....+....++ +.
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g------------~d~~~~~~~----~~~~~~~~~~~~~~ 68 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLG------------SDAGELAGA----GKTGVTVQSSLDAV 68 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCS------------CCTTCSSSS----SCCSCCEESCSTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhcc------------chhhhhhcc----ccCCceeeccHHHH
Confidence 48999995 99999999988775 56665 44543211000 000000000 00123344555 55
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChHHH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLNIV 431 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~~i 431 (539)
...+|+||+-.. ++...+.++ .....+..++..|++....++
T Consensus 69 ~~~~DViIDFs~--p~~~~~~~~---~a~~~~~~~ViGTTG~~~~~~ 110 (162)
T d1diha1 69 KDDFDVFIDFTR--PEGTLNHLA---FCRQHGKGMVIGTTGFDEAGK 110 (162)
T ss_dssp TTSCSEEEECSC--HHHHHHHHH---HHHHTTCEEEECCCCCCHHHH
T ss_pred hcccceEEEecc--HHHHHHHHH---HHHhccceeEEecCCCcHHHH
Confidence 688999998765 433333333 333445667778888876644
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=93.47 E-value=0.089 Score=47.96 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=34.8
Q ss_pred eEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| |+ +-+|.++|..|++.|++|++.+++++.+++..+++
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~ 53 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKV 53 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 65 66999999999999999999999998877766554
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.46 E-value=0.066 Score=42.42 Aligned_cols=80 Identities=23% Similarity=0.223 Sum_probs=55.7
Q ss_pred ceEEEEcC----CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
++|+|||+ |..|..+...|.+.||+|+.++++.+.+ ..+....++++
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----------------------------~G~~~y~sl~~ 52 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----------------------------EGLKCYRSVRE 52 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----------------------------cCccccccchh
Confidence 68999995 6779999999999999988887664321 22444555644
Q ss_pred C-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 ~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+ ...|+++.++| .+...+++++..+. ....++.
T Consensus 53 lp~~~D~vvi~vp--~~~~~~~l~~~~~~-g~k~v~~ 86 (116)
T d1y81a1 53 LPKDVDVIVFVVP--PKVGLQVAKEAVEA-GFKKLWF 86 (116)
T ss_dssp SCTTCCEEEECSC--HHHHHHHHHHHHHT-TCCEEEE
T ss_pred ccccceEEEEEeC--HHHHHHHHHHHHhc-CCceEEe
Confidence 4 55699999998 55566777776543 2334443
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.45 E-value=0.13 Score=46.62 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=34.2
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
|+++| | .+-+|.++|..|++.|++|++.|++++.++...++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE 48 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 55555 6 48899999999999999999999999887776543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.43 E-value=0.045 Score=49.51 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=34.0
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
++-|.|+ +-+|.++|..|++.|++|++.+++++.+++..++
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~ 48 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE 48 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 4555575 6799999999999999999999999887776543
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.39 E-value=0.15 Score=46.35 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=35.2
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| | .+-+|.++|..|++.|++|++++++++.+++..+.+
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~ 52 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW 52 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 5 567999999999999999999999999888876544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=93.37 E-value=0.14 Score=46.87 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=34.3
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
|+++| | .+-+|.++|..|++.|++|++.|++++.+++..+.
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~ 49 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNN 49 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 55555 5 56799999999999999999999999988876554
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.36 E-value=0.16 Score=41.48 Aligned_cols=80 Identities=13% Similarity=0.028 Sum_probs=57.4
Q ss_pred ceEEEEcC----CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
++|+|||+ +..|..+...|.++||+|+.+++..+.+ .......++++
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----------------------------~G~~~~~sl~d 70 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----------------------------LGRKCYPSVLD 70 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----------------------------TTEECBSSGGG
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----------------------------CCCcccccccc
Confidence 58999996 5789999999999999998888664211 23444555644
Q ss_pred C-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 ~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+ ...|+|+.++| ++....+++++.+.- ...++.
T Consensus 71 lp~~iD~v~i~vp--~~~~~~~~~e~~~~g-~k~v~~ 104 (139)
T d2d59a1 71 IPDKIEVVDLFVK--PKLTMEYVEQAIKKG-AKVVWF 104 (139)
T ss_dssp CSSCCSEEEECSC--HHHHHHHHHHHHHHT-CSEEEE
T ss_pred cCccceEEEEEeC--HHHHHHHHHHHHHhC-CCEEEE
Confidence 4 46899999998 666778888876653 344443
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.33 E-value=0.02 Score=51.00 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|.|||+|.-|...|..|+++|++|++++.++
T Consensus 8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 8899999999999999999999999999975
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=93.32 E-value=0.12 Score=47.61 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=33.1
Q ss_pred eEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 310 KVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++.|.| .+-+|.++|..|++.|++|++.|++++++++..+
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~ 47 (276)
T d1bdba_ 7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET 47 (276)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 344446 5889999999999999999999999988776543
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=93.29 E-value=0.18 Score=45.23 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=34.6
Q ss_pred ceEEEE-cC-CCCcHHHHHHHHHCCCe-------EEEEeCChHHHHHHHHH
Q 009256 309 RKVAVI-GG-GLMGSGIATAHILNNIY-------VVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iI-G~-G~mG~~iA~~l~~~G~~-------V~~~d~~~~~~~~~~~~ 350 (539)
|+|.+| |+ +-+|.++|..|+++|++ |++++++++.++...++
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~ 51 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE 51 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH
Confidence 466655 65 66899999999999987 99999999988877554
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=93.25 E-value=0.059 Score=49.26 Aligned_cols=42 Identities=33% Similarity=0.348 Sum_probs=33.4
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVN-SEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~-~~~~~~~~~~i 351 (539)
|+++| | .+-||.++|..|++.|++|++.+++ ++.++...+.+
T Consensus 5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~ 49 (260)
T d1x1ta1 5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL 49 (260)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHH
Confidence 56666 5 5669999999999999999999997 55666665544
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.25 E-value=0.021 Score=52.19 Aligned_cols=33 Identities=33% Similarity=0.364 Sum_probs=30.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~ 342 (539)
+|.|||+|.-|..+|..|+++|+ +|++++++++
T Consensus 3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 79999999999999999999995 9999999764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=93.11 E-value=0.15 Score=46.21 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=33.1
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++.|.|+ +-||.++|..|++.|++|++.|+++++++...+
T Consensus 7 ~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~ 47 (254)
T d1hdca_ 7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR 47 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4556665 669999999999999999999999988776543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.028 Score=47.78 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|.+|...+..+...|.+|+++|+++++++.+++
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK 69 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc
Confidence 47999999999999888777789999999999998887643
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.97 E-value=0.24 Score=44.45 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=31.8
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++-|.|+ +-+|.++|..|+++|++|++.+|+.+.+++.
T Consensus 7 ~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~ 45 (241)
T d2a4ka1 7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA 45 (241)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4555575 5699999999999999999999999876654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.96 E-value=0.021 Score=51.06 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~ 342 (539)
||+|||+|.-|.+-|..|.++ |++|++||..+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 899999999999999999775 789999998864
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.95 E-value=0.032 Score=50.60 Aligned_cols=41 Identities=24% Similarity=0.151 Sum_probs=34.5
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
||++| | .+-+|.++|..|++.|++|++.|++++.++...++
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 66655 5 57799999999999999999999999887776554
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.80 E-value=0.043 Score=45.41 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=55.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-Ccc
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYS 383 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 383 (539)
.+|||||+ |..|.-+.+.|.+++| ++..+.-+...-+. +.... ..+.... +.+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~------------i~~~~----------~~~~~~~~~~~ 60 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR------------MGFAE----------SSLRVGDVDSF 60 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE------------EEETT----------EEEECEEGGGC
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc------------eeecc----------ccchhccchhh
Confidence 47999997 9999999999987655 66665433221000 00000 1111111 225
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCCh
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDL 428 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~ 428 (539)
.+.++|++|.|+|... -.....++ ...+++|+++++....
T Consensus 61 ~~~~~d~vf~a~p~~~--s~~~~~~~---~~~g~~VID~Ss~fR~ 100 (144)
T d2hjsa1 61 DFSSVGLAFFAAAAEV--SRAHAERA---RAAGCSVIDLSGALEP 100 (144)
T ss_dssp CGGGCSEEEECSCHHH--HHHHHHHH---HHTTCEEEETTCTTTT
T ss_pred hhccceEEEecCCcch--hhhhcccc---ccCCceEEeechhhcc
Confidence 6789999999998433 33443333 3467888898887653
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.80 E-value=0.21 Score=45.68 Aligned_cols=42 Identities=24% Similarity=0.240 Sum_probs=35.6
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i 351 (539)
|+++| | .+-||.++|..|++.|++|++.|++++.++...+.+
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l 49 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII 49 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55555 5 577999999999999999999999999888876654
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.59 E-value=0.044 Score=45.75 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=31.1
Q ss_pred eEEEE--cCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 310 kI~iI--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
.+.|+ |.|.+|..+|..|++.|.+|+++++.+.-....
T Consensus 41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~ 80 (156)
T d1djqa2 41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH 80 (156)
T ss_dssp EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH
T ss_pred ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc
Confidence 45454 999999999999999999999999886544433
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.16 Score=46.59 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=36.7
Q ss_pred ceEEEE--cCCCCcHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHH
Q 009256 309 RKVAVI--GGGLMGSGIATAHILN-NIYVVLKEVNSEYLLKGIKTI 351 (539)
Q Consensus 309 ~kI~iI--G~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~i 351 (539)
++|+|| |.+-+|..+|+.|++. |..|++++|++++++.+.+.+
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l 48 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL 48 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHH
Confidence 479988 5678899999999975 899999999999988876654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.43 E-value=0.22 Score=39.76 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=55.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+.|-|+|.|.+|..++..| .|++|+++|.+++..+..... .. ..+ .|-.+.. + .+.. ..+..|
T Consensus 1 kHivI~G~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~---~~-~~i-~Gd~~~~--~-~L~~-------a~i~~A 63 (129)
T d2fy8a1 1 RHVVICGWSESTLECLREL--RGSEVFVLAEDENVRKKVLRS---GA-NFV-HGDPTRV--S-DLEK-------ANVRGA 63 (129)
T ss_dssp CCEEEESCCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHHT---TC-EEE-ESCTTSH--H-HHHH-------TTCTTC
T ss_pred CEEEEECCCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHhc---Cc-ccc-ccccCCH--H-HHHH-------hhhhcC
Confidence 3688999999999999998 477899999999987765321 00 000 1111100 0 0000 236789
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
+.+|.+.++|..- ..+...+.++.+.-.+++-
T Consensus 64 ~~vi~~~~~d~~n-~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 64 RAVIVNLESDSET-IHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp SEEEECCSSHHHH-HHHHHHHHHHCSSSCEEEE
T ss_pred cEEEEeccchhhh-HHHHHHHHHHCCCceEEEE
Confidence 9999888765532 2223334444444345543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.29 E-value=0.52 Score=39.53 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=34.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|+ |.+|..........|.+|++.+.++++.+.++
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~ 70 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL 70 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CEEEEEeccccccccccccccccCccccccccccccccccc
Confidence 37999995 99999888888889999999999988776653
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.23 E-value=0.11 Score=43.70 Aligned_cols=40 Identities=23% Similarity=0.148 Sum_probs=35.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|+|.+|...+..+...|.+|++.++++++++.++
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k 68 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK 68 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence 4799999999999988888889999999999999877653
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.039 Score=50.11 Aligned_cols=38 Identities=21% Similarity=0.244 Sum_probs=33.0
Q ss_pred eEEEE--cCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 310 kI~iI--G~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
|+++| |.+.+|.++|+.|+++|++|++.|+++++++..
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~ 46 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL 46 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 66676 569999999999999999999999998876654
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.038 Score=52.01 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=29.0
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|.|||+|.-|.+-|..|+++|++|++++.+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 7899999999999999999999999999653
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=91.78 E-value=0.22 Score=45.11 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=30.7
Q ss_pred ceEEEEcC-CC--CcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 309 RKVAVIGG-GL--MGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 309 ~kI~iIG~-G~--mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
+++.|.|+ |. ||.++|+.|++.|.+|++.+++.++..
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 35666785 65 999999999999999999999987643
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.78 E-value=0.32 Score=44.31 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=31.2
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCCh-HHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNS-EYLLKGIK 349 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~-~~~~~~~~ 349 (539)
|+++| | .+-+|.++|..|+++|++|++.+++. +.++...+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~ 61 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVA 61 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH
Confidence 56666 5 68899999999999999999998874 44554433
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.70 E-value=0.026 Score=50.34 Aligned_cols=34 Identities=18% Similarity=0.156 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-------CeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-------IYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-------~~V~~~d~~~~ 342 (539)
.||+|||+|.-|.+-|..|+++| ++|++||.++.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 48999999999999999999988 47999998864
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=91.68 E-value=0.28 Score=44.60 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=29.1
Q ss_pred ceEEEEcC-C--CCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 309 RKVAVIGG-G--LMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~-G--~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
+++.|.|+ | -+|.++|..|++.|++|++.+++++.
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~ 43 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL 43 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 35667785 5 49999999999999999999999653
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.58 E-value=0.11 Score=47.30 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=37.0
Q ss_pred ceEEEE-cC-CCCcHHHHHHHHH---CCCeEEEEeCChHHHHHHHHHHH
Q 009256 309 RKVAVI-GG-GLMGSGIATAHIL---NNIYVVLKEVNSEYLLKGIKTIE 352 (539)
Q Consensus 309 ~kI~iI-G~-G~mG~~iA~~l~~---~G~~V~~~d~~~~~~~~~~~~i~ 352 (539)
.||+|| |+ +-+|.++|..|++ +|++|++.+|+++.++.+.+++.
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~ 54 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG 54 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence 378888 54 5689999999986 79999999999999888876653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.57 E-value=0.042 Score=46.40 Aligned_cols=33 Identities=42% Similarity=0.483 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC--eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI--YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~--~V~~~d~~~ 341 (539)
+||.|||+|..|..+|..|.+.|. +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 589999999999999999999874 899999876
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=91.56 E-value=0.34 Score=43.94 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=31.8
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChH-HHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSE-YLLKGIK 349 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~-~~~~~~~ 349 (539)
|++|| | .+-+|.++|..|++.|++|++.+++.+ .++...+
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~ 50 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE 50 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence 56666 4 578999999999999999999999854 4555444
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=91.51 E-value=0.079 Score=45.40 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=55.7
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHC-CCeEEEEe-CCh--HHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILN-NIYVVLKE-VNS--EYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~-G~~V~~~d-~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
|.||+|||+ |..|.-+.+.|.++ .+++..+. .+. ..-+...+. ... . .+... .......+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~----~~~-~-~~~~~--------~~~~~~~~~ 66 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDL----HPQ-L-KGIVD--------LPLQPMSDV 66 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHH----CGG-G-TTTCC--------CBEEEESCG
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeeccccccccccccc----ccc-c-ccccc--------cccccchhh
Confidence 579999995 99999999999987 56765442 211 111111000 000 0 00000 001111222
Q ss_pred -cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 383 -SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 383 -~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
....++|++|.|+|... -.+....+ ...++.+++.++.....
T Consensus 67 ~~~~~~~dvvf~alp~~~--s~~~~~~~---~~~~~~vIDlSadfRl~ 109 (179)
T d2g17a1 67 RDFSADVDVVFLATAHEV--SHDLAPQF---LQAGCVVFDLSGAFRVN 109 (179)
T ss_dssp GGTCTTCCEEEECSCHHH--HHHHHHHH---HHTTCEEEECSSTTSSS
T ss_pred hhhhcccceeeccccchh--HHHHhhhh---hhcCceeeccccccccc
Confidence 34678999999998433 33333333 34677788888765543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=91.48 E-value=0.046 Score=49.16 Aligned_cols=32 Identities=31% Similarity=0.355 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 88999999999999999999999999998754
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=91.45 E-value=0.068 Score=49.38 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.9
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
+||.|+|+ |.+|+.++..|.++||+|++++|++.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~ 38 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV 38 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence 57999995 99999999999999999999998754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=91.38 E-value=0.29 Score=44.05 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=29.4
Q ss_pred eEEEEcCCC---CcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 310 KVAVIGGGL---MGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 310 kI~iIG~G~---mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
+|-|.|++. +|.++|..|++.|++|++.+++++..+..
T Consensus 7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 455557643 66999999999999999999997654443
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=91.38 E-value=0.12 Score=42.17 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=56.8
Q ss_pred ceEEEEcC----CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGG----GLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~----G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 384 (539)
++|+|||+ +..|..+..+|.+.||++..+..++...+ ........++.+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~---------------------------i~g~~~~~~l~~ 66 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE---------------------------LFGEEAVASLLD 66 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE---------------------------ETTEECBSSGGG
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce---------------------------eeceecccchhh
Confidence 47999997 77899999999999999999988753100 012344555544
Q ss_pred C-CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 F-KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 ~-~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
+ ...|+|+.++| .+...+++++..+.- ...++.
T Consensus 67 i~~~iD~v~v~~p--~~~v~~~v~~~~~~g-~k~i~~ 100 (136)
T d1iuka_ 67 LKEPVDILDVFRP--PSALMDHLPEVLALR-PGLVWL 100 (136)
T ss_dssp CCSCCSEEEECSC--HHHHTTTHHHHHHHC-CSCEEE
T ss_pred ccCCCceEEEecc--HHHHHHHHHHHHhhC-CCeEEE
Confidence 4 56799999998 555556777765543 345554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.36 E-value=0.86 Score=38.29 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|+|.+|...+..+...|. .|++.|+++++++.++
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~ 70 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 70 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence 479999999999999999999997 6888999999877763
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.25 E-value=0.035 Score=44.08 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHH---CCCeEEEEeCChHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~~ 344 (539)
++|.|||+|.+|.-+|..|.. +|.+|+++++.+.-+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL 59 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL 59 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence 589999999999999976654 456899999876544
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=91.14 E-value=0.29 Score=44.00 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=28.2
Q ss_pred eEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|+++| |+ +-||.++|..|++.|++|++.|++++
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPA 40 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 56655 64 67999999999999999999999875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.13 E-value=0.36 Score=40.78 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|.+|...+..+...|. +|++.|+++++++.+++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 479999999999999999988886 79999999999887743
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=91.09 E-value=0.48 Score=42.55 Aligned_cols=38 Identities=21% Similarity=0.112 Sum_probs=30.1
Q ss_pred eEEEEcCC---CCcHHHHHHHHHCCCeEEEEeCChHHHHHH
Q 009256 310 KVAVIGGG---LMGSGIATAHILNNIYVVLKEVNSEYLLKG 347 (539)
Q Consensus 310 kI~iIG~G---~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~ 347 (539)
++-|.|++ -+|.++|..|++.|++|++.+++++..+..
T Consensus 10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~ 50 (256)
T d1ulua_ 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA 50 (256)
T ss_dssp EEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH
Confidence 45566864 499999999999999999999987654443
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=91.06 E-value=0.037 Score=43.91 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHH---CCCeEEEEeCChHH
Q 009256 309 RKVAVIGGGLMGSGIATAHIL---NNIYVVLKEVNSEY 343 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~---~G~~V~~~d~~~~~ 343 (539)
++|.|||+|..|.-+|..|.+ .|.+|+++++.+.-
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i 56 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence 589999999999999987655 38899999987653
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=91.03 E-value=0.43 Score=42.70 Aligned_cols=42 Identities=19% Similarity=0.102 Sum_probs=32.8
Q ss_pred eEEEE--cCCCCcHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHH
Q 009256 310 KVAVI--GGGLMGSGIATAHILNNIYVVLKE-VNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI--G~G~mG~~iA~~l~~~G~~V~~~d-~~~~~~~~~~~~i 351 (539)
+|++| |.+-+|.++|..|++.|++|++.+ ++++.++...+.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~ 46 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI 46 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence 46666 467899999999999999999865 5777777665544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.99 E-value=0.062 Score=45.82 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|-+|...+..+...|. .|+..|+++++.+.+.+
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~ 71 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE 71 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH
Confidence 479999999999999999999884 89999999998887643
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.96 E-value=0.091 Score=47.61 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=30.1
Q ss_pred eEEE-Ec-CCCCcHHHHHHHHHCCCeEEEEeCChHHHH
Q 009256 310 KVAV-IG-GGLMGSGIATAHILNNIYVVLKEVNSEYLL 345 (539)
Q Consensus 310 kI~i-IG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~ 345 (539)
|+++ .| .+-||.++|..|++.|++|++.|++++..+
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~ 43 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE 43 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 4444 45 588999999999999999999999987644
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.83 E-value=0.6 Score=39.07 Aligned_cols=40 Identities=23% Similarity=0.172 Sum_probs=33.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNN-IYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~ 348 (539)
.+|.|+|+|.+|...+..+...| ..|++.|+++++++.++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~ 74 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE 74 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence 37999999999999888877666 47888999998877764
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=90.74 E-value=0.073 Score=49.70 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=31.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
.|.|||+|.-|..+|..|.+.|++|+++|.+++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 699999999999999999999999999998764
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.62 E-value=0.071 Score=44.52 Aligned_cols=93 Identities=18% Similarity=0.150 Sum_probs=54.2
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCC---eEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccC-CccC
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNI---YVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVL-DYSE 384 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~---~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~ 384 (539)
||+|||+ |..|.-+.+.|.++.+ ++..+.-+... .+ .+.... ....... ....
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~-G~-----------~~~~~~----------~~~~~~~~~~~~ 60 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-GK-----------SLKFKD----------QDITIEETTETA 60 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGT-TC-----------EEEETT----------EEEEEEECCTTT
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccc-cc-----------cccccC----------Ccccccccchhh
Confidence 7999997 9999999999988865 34444322111 00 000000 1111111 1255
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
..++|+++.+.|.... ..... +....++.|+++++.....
T Consensus 61 ~~~~d~~f~~~~~~~s--~~~~~---~~~~~~~~VIDlSsdfR~~ 100 (154)
T d2gz1a1 61 FEGVDIALFSAGSSTS--AKYAP---YAVKAGVVVVDNTSYFRQN 100 (154)
T ss_dssp TTTCSEEEECSCHHHH--HHHHH---HHHHTTCEEEECSSTTTTC
T ss_pred hhhhhhhhhccCccch--hhHHh---hhccccceehhcChhhhcc
Confidence 7889999999984433 23322 2334688899988876654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.62 E-value=0.38 Score=43.41 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=31.7
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLK-EVNSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~-d~~~~~~~~~~~~i 351 (539)
|+++| | .+-+|.++|..|++.|++|++. +++++.++...+.+
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~ 51 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL 51 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH
Confidence 45555 5 5779999999999999999985 56766666665543
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.51 E-value=0.049 Score=51.54 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHH-----HCCCeEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHI-----LNNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~-----~~G~~V~~~d~~~~ 342 (539)
-|.|||+|..|..+|..|+ ++|++|+++|+++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 5999999999999999996 47999999998754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=90.47 E-value=0.11 Score=44.52 Aligned_cols=40 Identities=18% Similarity=-0.056 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
.+|-.||+|. +..+..|+++|++|+++|++++.++.+.++
T Consensus 22 ~rvLd~GCG~--G~~a~~la~~G~~V~gvD~S~~~i~~a~~~ 61 (201)
T d1pjza_ 22 ARVLVPLCGK--SQDMSWLSGQGYHVVGAELSEAAVERYFTE 61 (201)
T ss_dssp CEEEETTTCC--SHHHHHHHHHCCEEEEEEECHHHHHHHHHH
T ss_pred CEEEEecCcC--CHHHHHHHHcCCceEeecccHHHHHHHHHH
Confidence 3899999998 468889999999999999999999988664
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.40 E-value=0.65 Score=38.66 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=34.4
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
.+|.|+|+ |.+|...+..+...|. +|+++++++++.+.+++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~ 71 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR 71 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH
Confidence 47999995 9999988888887784 99999999998777643
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=90.18 E-value=0.12 Score=46.31 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=31.4
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (539)
++-|.|+ +-+|.++|..|++.|++|++.||+++.++.
T Consensus 6 ~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 4556675 679999999999999999999999877654
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=89.98 E-value=0.073 Score=48.14 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
+|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 32 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 32 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 79999999999999999999998 899999764
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=89.78 E-value=0.08 Score=50.30 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=32.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
++|.|+|+ |.+|+.++..|+++||+|+++.|++...
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~ 40 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL 40 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence 57999985 9999999999999999999999987654
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=89.76 E-value=0.16 Score=43.29 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=55.5
Q ss_pred cceEEEEcC-CCCcHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc-cC
Q 009256 308 VRKVAVIGG-GLMGSGIATAHILNN-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY-SE 384 (539)
Q Consensus 308 ~~kI~iIG~-G~mG~~iA~~l~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 384 (539)
|.||+|+|+ |..|.-+.+.|.++- +++..+--+...-+.. ......... . ..+. ..+. +.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i----~~~~p~~~~-~-----------~~~~-~~~~~~~ 63 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKL----EEIFPSTLE-N-----------SILS-EFDPEKV 63 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBH----HHHCGGGCC-C-----------CBCB-CCCHHHH
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcc----cccCchhhc-c-----------cccc-ccCHhHh
Confidence 568999996 999999999998864 3666553222111111 000000000 0 0011 1122 23
Q ss_pred CCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCChH
Q 009256 385 FKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTIDLN 429 (539)
Q Consensus 385 ~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~~~ 429 (539)
..++|+|+.++|..... . +.+.. .++.|+++++.....
T Consensus 64 ~~~~dvvf~a~p~~~s~--~----~~~~~-~~~~VIDlSadfRl~ 101 (176)
T d1vkna1 64 SKNCDVLFTALPAGASY--D----LVREL-KGVKIIDLGADFRFD 101 (176)
T ss_dssp HHHCSEEEECCSTTHHH--H----HHTTC-CSCEEEESSSTTTCS
T ss_pred ccccceEEEccccHHHH--H----HHHhh-ccceEEecCcccccc
Confidence 46899999999976542 2 22233 567888998877654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=89.38 E-value=0.088 Score=47.57 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=27.6
Q ss_pred eEE-EEc-CCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 310 KVA-VIG-GGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~-iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
||. |.| .+-+|.++|+.|++.|++|++.|++++
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 455 446 477999999999999999999999864
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.29 E-value=0.18 Score=40.95 Aligned_cols=100 Identities=16% Similarity=0.091 Sum_probs=57.2
Q ss_pred ceEEEEcCC----------CCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc
Q 009256 309 RKVAVIGGG----------LMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG 378 (539)
Q Consensus 309 ~kI~iIG~G----------~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 378 (539)
+||+|+|+- .-...++..|...|.+|.+||+.-...+..... ...+..... ......
T Consensus 14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~-~~~~~~~~~------------~~~~~~ 80 (136)
T d1mv8a3 14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGAN-KEYIESKIP------------HVSSLL 80 (136)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSC-HHHHHHTSH------------HHHTTB
T ss_pred CEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhh-hhhhhhccc------------ccccee
Confidence 489999974 345678888999999999999743321100000 000000000 011233
Q ss_pred cCCc-cCCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEEecCCCCC
Q 009256 379 VLDY-SEFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILATNTSTID 427 (539)
Q Consensus 379 ~~~~-~~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~s~ts~~~ 427 (539)
.+++ +++.++|+||.+++.+. |.++...+.++.+|++...-++
T Consensus 81 ~~~~~e~i~~~D~ivi~t~h~~------f~~l~~~~~~~~~I~D~~~~~~ 124 (136)
T d1mv8a3 81 VSDLDEVVASSDVLVLGNGDEL------FVDLVNKTPSGKKLVDLVGFMP 124 (136)
T ss_dssp CSCHHHHHHHCSEEEECSCCGG------GHHHHHSCCTTCEEEESSSCCS
T ss_pred ehhhhhhhhhceEEEEEeCCHH------HHHHHHHhcCCCEEEECCCCCC
Confidence 4555 77899999999987432 2334455666777777554433
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.09 E-value=0.24 Score=43.31 Aligned_cols=39 Identities=15% Similarity=0.001 Sum_probs=31.4
Q ss_pred CcceEEEEc-CCCCcHHHHHHHHHCCCeEEE--EeCChHHHH
Q 009256 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVL--KEVNSEYLL 345 (539)
Q Consensus 307 ~~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~--~d~~~~~~~ 345 (539)
.|++|.|.| .|.+|..++..|+++|++|.+ ..|+++...
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~ 43 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE 43 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH
Confidence 367999998 599999999999999987555 457776544
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.03 E-value=0.28 Score=41.44 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=28.4
Q ss_pred ceEEEEcCCC-CcHHHHHHHHHCCCeEEEEeCC
Q 009256 309 RKVAVIGGGL-MGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~-mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
++|.|||-+. .|.++|..|++.|..|+.++.+
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 5899999765 5999999999999999999865
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.87 E-value=0.088 Score=44.03 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
+||.|||+|..|..+|..|. .+++|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHH-cCCCEEEEeccc
Confidence 48999999999999999885 578999998753
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=88.83 E-value=0.1 Score=47.04 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=31.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
.|.|||+|.-|...|..++++|++|+++|+++..
T Consensus 6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~ 39 (253)
T d2gqfa1 6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI 39 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 5899999999999999999999999999998654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=88.75 E-value=0.077 Score=48.33 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=30.1
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
+||.|.|+ |.+|+.++..|.++||+|+..|+++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 47999997 9999999999999999999999864
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=88.41 E-value=0.63 Score=41.90 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc---cCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY---SEF 385 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~ 385 (539)
++|.=+|+|. | .++..+++.|.+|+.+|++++.++.+++..+ ..+ ++ ..+. ..+. ..-
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~-------~n~-~~--------~~~~-~~d~~~~~~~ 182 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAK-------RNG-VR--------PRFL-EGSLEAALPF 182 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHH-------HTT-CC--------CEEE-ESCHHHHGGG
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHH-------HcC-Cc--------eeEE-eccccccccc
Confidence 3788999998 4 4566778889999999999999988865432 111 11 0111 1111 112
Q ss_pred CCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 386 KDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 386 ~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
...|+|+-... ......++.++.+.++|+..++
T Consensus 183 ~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~li 215 (254)
T d2nxca1 183 GPFDLLVANLY--AELHAALAPRYREALVPGGRAL 215 (254)
T ss_dssp CCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred cccchhhhccc--cccHHHHHHHHHHhcCCCcEEE
Confidence 46788886654 4456677788888888877654
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=88.41 E-value=0.11 Score=44.88 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~ 341 (539)
+||.|||+|..|..+|..|.+. +.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4899999999999999999886 56899998764
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.38 E-value=2.8 Score=34.63 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=34.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
++|.|+|+|.+|...+..++..|- .|+..|+++++++.+++
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~ 71 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV 71 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence 479999999999999988888765 79999999998887643
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.33 E-value=0.19 Score=44.61 Aligned_cols=39 Identities=13% Similarity=-0.152 Sum_probs=34.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKT 350 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~ 350 (539)
+|-.+|+|. +..+..|++.|++|+.+|.+++.++.+.+.
T Consensus 48 rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~ 86 (229)
T d2bzga1 48 RVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFTE 86 (229)
T ss_dssp EEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred EEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence 799999999 577888999999999999999998887553
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.31 E-value=0.52 Score=39.49 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=32.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGI 348 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~ 348 (539)
++|.|+|+|-+|...+..+...|. .|+..|+++++.+.++
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak 70 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 70 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH
Confidence 379999999988888877777885 7888899998877654
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.06 E-value=1.5 Score=41.68 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccCCCchhhhhhcCCCcccccchHHHHHHHHHHHhCCCcEEEEE-
Q 009256 27 ALAIPIVAGLKDKFEEATSRDDVKAIVLTGNGGRFSGGFDINVFQKVHGAGDVSLMPDVSVELVVNLIEDCKKPIVAAV- 105 (539)
Q Consensus 27 al~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~iaav- 105 (539)
.+.++-...-.+.+..+.+..++-+|+|.- -++|+.|-+-. .....+....++ .++.++..|+|..|
T Consensus 109 v~~p~sA~K~A~~i~d~cd~~~lPLi~l~D-~pGF~~G~~~E----------~~gilr~GA~iv-~A~~~~~vP~i~vI~ 176 (404)
T d1uyra2 109 VWHPNSAFKTAQAINDFNNGEQLPMMILAN-WRGFSGGQRDM----------FNEVLKYGSFIV-DALVDYKQPIIIYIP 176 (404)
T ss_dssp CBCHHHHHHHHHHHHHHHTTSCCCEEECCC-CCCBCC----------------CTHHHHHHHHH-HHHHTCCSCEEEEEC
T ss_pred ccCchHHHHHHHHHHHhhhccccceEEeec-CCcccCcHHHH----------HHHHHHHHHHHH-HHHHhcCCCEEEEEe
Confidence 456777777888887666555666666643 35688887422 122334455666 78999999999999
Q ss_pred -cCccccchhHhhh---c-cCE-EEeeCCceEeCCcccCCCCCCcchhhcc
Q 009256 106 -EGLALGGGLELAM---G-CHA-RIAAPKTQLGLPELTLGVIPGFGGTQRL 150 (539)
Q Consensus 106 -~G~a~GgG~~lal---~-~D~-~ia~~~a~f~~pe~~~Gl~p~~g~~~~l 150 (539)
.|.+.||.+...- . .++ ++|-++ .+.|.+++-|+....
T Consensus 177 ~~g~~~GGa~vv~~~~~~~~~~~~yAwP~-------a~~gVm~pEGav~I~ 220 (404)
T d1uyra2 177 PTGELRGGSWVVVDPTINADQMEMYADVN-------ARAGVLEPQGMVGIK 220 (404)
T ss_dssp TTCEEEHHHHHTTCGGGGTTTEEEEEETT-------CEEESSCHHHHHHHH
T ss_pred CCcccchhhhhcccCccCCccceEEECCc-------cccccCChhhhhhhe
Confidence 5766665543331 1 122 344455 455566656655444
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.02 E-value=0.1 Score=44.24 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
++|.|||+|..|..+|..|.+.|.+|+++.+.++
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA 37 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence 4799999999999999999999999888766543
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.93 E-value=1.4 Score=38.71 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=59.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCC---ccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLD---YSE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~---~~~ 384 (539)
++|.=||+|. +.++..|++.|.+|+++|.+++.++.+.+... +.+. ++++ ..+ +..
T Consensus 43 ~~iLDiGcGt--G~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~-------~~~~-----------~i~~~~~d~~~l~~ 102 (251)
T d1wzna1 43 RRVLDLACGT--GIPTLELAERGYEVVGLDLHEEMLRVARRKAK-------ERNL-----------KIEFLQGDVLEIAF 102 (251)
T ss_dssp CEEEEETCTT--CHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-------HTTC-----------CCEEEESCGGGCCC
T ss_pred CEEEEeCCCC--CccchhhcccceEEEEEeeccccccccccccc-------cccc-----------cchheehhhhhccc
Confidence 4899999998 45566788999999999999999888866432 1110 1111 111 111
Q ss_pred CCCcCEEEEcc----cCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 FKDVDMVIEAV----IESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 ~~~aDlVi~av----pe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
-...|+|+..- .-+..-.+.+++++..+++|+.+++
T Consensus 103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~li 142 (251)
T d1wzna1 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFI 142 (251)
T ss_dssp CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEE
Confidence 13568877542 1122334577899999999887554
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.88 E-value=0.14 Score=48.64 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=31.2
Q ss_pred CCCCcceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 304 KPRGVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 304 ~~~~~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|.+.| ||.|.| .|.+|+.++..|.++||+|+++|+..
T Consensus 12 ~~~nM-KILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 12 PSENL-KISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp TTSCC-EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCCC-EEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 44444 699998 59999999999999999999998753
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=87.64 E-value=0.37 Score=43.19 Aligned_cols=30 Identities=23% Similarity=0.104 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEe
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKE 338 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d 338 (539)
++|+|=|.|++|...|+.|.+.|..|+.++
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs 61 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVS 61 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence 489999999999999999999999988654
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.55 E-value=1.6 Score=36.17 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=44.5
Q ss_pred ceEEEEcCC-CCcHHHHHHHHHCCCeEEEEeCC-----hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 309 RKVAVIGGG-LMGSGIATAHILNNIYVVLKEVN-----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 309 ~kI~iIG~G-~mG~~iA~~l~~~G~~V~~~d~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
.||++||-| ++..|++..+...|.+|+++.+. ++..+.+.+.. .. ..+.+..+.+.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~-------~~-----------~~~~~~~~~d~ 66 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNA-------AE-----------SGGSFELLHDP 66 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHH-------HH-----------HTCEEEEESCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhh-------hc-----------ccceEEEecCH
Confidence 389999974 35577777788889999998653 33333322210 01 11345666776
Q ss_pred -cCCCCcCEEEEcc
Q 009256 383 -SEFKDVDMVIEAV 395 (539)
Q Consensus 383 -~~~~~aDlVi~av 395 (539)
+++.++|+|..-.
T Consensus 67 ~ea~~~adviy~~~ 80 (163)
T d1pvva2 67 VKAVKDADVIYTDV 80 (163)
T ss_dssp HHHTTTCSEEEECC
T ss_pred HHHhhhccEEeecc
Confidence 7899999998543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=87.27 E-value=0.33 Score=41.89 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=33.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q 009256 310 KVAVIGGGLMGSGIATAHILNNI-YVVLKEVNSEYLLKGIK 349 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~ 349 (539)
+|.|+|+|.+|...+......|. .|++.|.++++++.+++
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence 79999999999777777766676 89999999999887643
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=87.16 E-value=0.17 Score=47.59 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=28.5
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV 339 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~ 339 (539)
+||.|+|+ |.+|+.++..|++.|++|+++|+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 47999985 99999999999999999999986
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.04 E-value=0.38 Score=43.23 Aligned_cols=39 Identities=28% Similarity=0.251 Sum_probs=30.8
Q ss_pred EEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHHH-HHHHH
Q 009256 311 VAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEYL-LKGIK 349 (539)
Q Consensus 311 I~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~-~~~~~ 349 (539)
|++| | .+-+|.++|..|+++|++|++.+++.+.. ++..+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~ 44 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVA 44 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHH
Confidence 6666 5 46699999999999999999999986653 44433
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=86.79 E-value=0.15 Score=46.66 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=29.9
Q ss_pred eEEEEcCCCCcHHHHHHHHH-CCCeEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHIL-NNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~ 342 (539)
-|.|||+|.-|...|..|++ .|++|+++|.++.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 49999999999999999987 5999999998763
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=86.67 E-value=0.19 Score=47.49 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=32.3
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeCChHHH
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 344 (539)
+||-|.| .|.+|+.++..|+++|++|+++|++....
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~ 45 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV 45 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 5899998 59999999999999999999999986543
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=86.60 E-value=0.15 Score=43.70 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.5
Q ss_pred cceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 308 VRKVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 308 ~~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
-++|.|||.|.-|.+-|..+++.|.+|+++++..
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 3579999999999999999999999999998653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=86.45 E-value=0.88 Score=38.84 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=57.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc---cCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---SEF 385 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~~ 385 (539)
+|-=||+|. +..+..|+++|++|+.+|++++.++.+.+.... .+. ..+.+ ..|. ..-
T Consensus 33 rvLDiGcG~--G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~-------~~~----------~~~~~~~~d~~~~~~~ 93 (198)
T d2i6ga1 33 RTLDLGCGN--GRNSLYLAANGYDVTAWDKNPASMANLERIKAA-------EGL----------DNLQTDLVDLNTLTFD 93 (198)
T ss_dssp EEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-------TTC----------TTEEEEECCTTTCCCC
T ss_pred cEEEECCCC--CHHHHHHHHHhhhhccccCcHHHHHHHHHHhhh-------ccc----------cchhhhheeccccccc
Confidence 689999994 447778899999999999999999987654321 110 11111 1111 111
Q ss_pred CCcCEEEEccc-C--ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 386 KDVDMVIEAVI-E--SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 386 ~~aDlVi~avp-e--~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
..-|+|+.... . +......+++++...++++.+++
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~ 131 (198)
T d2i6ga1 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNL 131 (198)
T ss_dssp CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 34588774321 1 12345678889999888877554
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.19 E-value=0.15 Score=43.82 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
.+|.|||+|.-|..-|..+++.|.+|+++|..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence 58999999999999999999999999999854
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=86.15 E-value=0.76 Score=41.61 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=32.2
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEV-NSEYLLKGIKTI 351 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~-~~~~~~~~~~~i 351 (539)
.|+|| | .+-+|.++|..|++.|++|++.++ +++..+...+.+
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l 47 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL 47 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHH
Confidence 48888 5 467999999999999999998765 555566555443
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=85.94 E-value=0.19 Score=43.90 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
|.|||+|.-|...|..+++.|.+|++++.+
T Consensus 5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 5 YIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999999999999999999999976
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.90 E-value=0.25 Score=48.36 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCC-eEEEEeCCh
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNI-YVVLKEVNS 341 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 341 (539)
.||.|||+|.+|+.++..|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 379999999999999999999998 899999764
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=85.70 E-value=0.56 Score=39.91 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=23.6
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCC-CeEEEEe
Q 009256 310 KVAVIGG-GLMGSGIATAHILNN-IYVVLKE 338 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G-~~V~~~d 338 (539)
||+|||+ |..|.-+.+.|.++- +++..+.
T Consensus 7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp EEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred EEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 7999996 999999999998863 4666554
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=85.66 E-value=0.13 Score=48.65 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.1
Q ss_pred CcceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeC
Q 009256 307 GVRKVAVIG-GGLMGSGIATAHILNNIYVVLKEV 339 (539)
Q Consensus 307 ~~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~ 339 (539)
+|+||.|.| .|.+|+.++..|.++|++|.++.+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 478999998 599999999999999987666554
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.63 E-value=0.15 Score=45.31 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=29.1
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
|+++| | .+-+|.++|..|++.|++|++.|++++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 45555 5 5889999999999999999999998764
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=85.45 E-value=0.21 Score=46.24 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
-|.|||+|.-|.+.|..++++|++|++++.++
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 48999999999999999999999999999754
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.26 E-value=0.25 Score=45.89 Aligned_cols=31 Identities=19% Similarity=0.524 Sum_probs=28.6
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeC
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEV 339 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~ 339 (539)
+||.|.|+ |.+|+.++..|++.|++|+++|+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 58999985 99999999999999999999986
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.17 E-value=0.28 Score=44.19 Aligned_cols=38 Identities=13% Similarity=-0.126 Sum_probs=31.2
Q ss_pred EEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q 009256 311 VAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLKGI 348 (539)
Q Consensus 311 I~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~ 348 (539)
.-|-|+ +-+|.++|..|++.|++|++.|++.+.++.+.
T Consensus 3 AlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~ 41 (252)
T d1zmta1 3 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE 41 (252)
T ss_dssp EEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 334565 56999999999999999999999988776653
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.89 E-value=0.26 Score=46.41 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=28.3
Q ss_pred ceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeC
Q 009256 309 RKVAVIG-GGLMGSGIATAHILNNIYVVLKEV 339 (539)
Q Consensus 309 ~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~ 339 (539)
+||.|.| .|.+|+.++..|++.|++|+++|+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 5899998 499999999999999999999984
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=84.79 E-value=0.25 Score=43.50 Aligned_cols=32 Identities=31% Similarity=0.339 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
-|.|||+|.-|.+-|..+++.|++|++++.++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 38899999999999999999999999999765
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=84.61 E-value=1.1 Score=40.15 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=28.5
Q ss_pred eEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChHHHHH
Q 009256 310 KVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSEYLLK 346 (539)
Q Consensus 310 kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 346 (539)
.|-|.|+ +-+|.++|+.|++.|.+|++.+++.+..+.
T Consensus 7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~ 44 (254)
T d1sbya1 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTA 44 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHH
Confidence 4555565 569999999999999999888776655443
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.40 E-value=0.25 Score=40.03 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHH----CCCeEEEEeCChHHH
Q 009256 309 RKVAVIGGGLMGSGIATAHIL----NNIYVVLKEVNSEYL 344 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~----~G~~V~~~d~~~~~~ 344 (539)
++|.|||+|..|.-+|..|++ .|.+|+++++++.-+
T Consensus 38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l 77 (137)
T d1m6ia2 38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM 77 (137)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC
Confidence 379999999999999988853 589999999876543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.34 E-value=1.9 Score=36.21 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=58.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc----c
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY----S 383 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~----~ 383 (539)
.+|.=||+|.= .++..+++.+.+|+.+|++++.++.+++..++ .| ++ .++.+. .+. .
T Consensus 35 ~~VLDiGcGsG--~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~-------~g-l~--------~~v~~~~gda~~~~~ 96 (186)
T d1l3ia_ 35 DVAVDVGCGTG--GVTLELAGRVRRVYAIDRNPEAISTTEMNLQR-------HG-LG--------DNVTLMEGDAPEALC 96 (186)
T ss_dssp CEEEEESCTTS--HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH-------TT-CC--------TTEEEEESCHHHHHT
T ss_pred CEEEEEECCeE--cccccccccceEEEEecCCHHHHHHHHHHHHH-------cC-CC--------cceEEEECchhhccc
Confidence 37888999884 44445677788999999999999988765321 11 11 112111 111 2
Q ss_pred CCCCcCEEEEcccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 384 EFKDVDMVIEAVIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 384 ~~~~aDlVi~avpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
.....|+|+...+ ......+++.+.+.++|+..++
T Consensus 97 ~~~~~D~v~~~~~--~~~~~~~~~~~~~~LkpgG~lv 131 (186)
T d1l3ia_ 97 KIPDIDIAVVGGS--GGELQEILRIIKDKLKPGGRII 131 (186)
T ss_dssp TSCCEEEEEESCC--TTCHHHHHHHHHHTEEEEEEEE
T ss_pred ccCCcCEEEEeCc--cccchHHHHHHHHHhCcCCEEE
Confidence 3467898887654 2334577888888888877554
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.28 E-value=0.28 Score=43.04 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.7
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|.|||+|.-|..-|..+++.|++|+++|.++.
T Consensus 8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~~ 39 (233)
T d1v59a1 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK 39 (233)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 89999999999999999999999999997643
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.22 E-value=0.2 Score=41.33 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEV 339 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~ 339 (539)
++|.|||+|.+|..-+..|+++|-+|++++.
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 5899999999999999999999999999964
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.10 E-value=0.29 Score=47.02 Aligned_cols=30 Identities=33% Similarity=0.419 Sum_probs=28.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEe
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKE 338 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d 338 (539)
+||.|.|+ |.+|+.++..|++.||+|+++|
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD 32 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD 32 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 48999985 9999999999999999999998
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=84.07 E-value=0.51 Score=42.41 Aligned_cols=76 Identities=14% Similarity=0.037 Sum_probs=52.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCccCCCCc
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDYSEFKDV 388 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 388 (539)
+||++||. + +....+.+.|.+++++|+|+...+ ... ....+.+..|
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~gd------------------~p~------------~~~~~lLp~a 168 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEEGD------------------YPL------------PASEFILPEC 168 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCTTC------------------EEG------------GGHHHHGGGC
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCCCC------------------CCc------------hHHHHhhhcC
Confidence 58999975 4 566667888999999999974211 000 0011457889
Q ss_pred CEEEEcccCChhHHHHHHHHHHHhCCCCe-EEEe
Q 009256 389 DMVIEAVIESVPLKQKIFSELEKACPPHC-ILAT 421 (539)
Q Consensus 389 DlVi~avpe~~~~~~~~~~~l~~~~~~~~-ii~s 421 (539)
|+||.+- ..+....+..|.+++++.. +++.
T Consensus 169 D~viiTG---sTlvN~Tl~~LL~~~~~a~~vvl~ 199 (251)
T d2h1qa1 169 DYVYITC---ASVVDKTLPRLLELSRNARRITLV 199 (251)
T ss_dssp SEEEEET---HHHHHTCHHHHHHHTTTSSEEEEE
T ss_pred CEEEEEe---chhhcCCHHHHHHhCCcCCEEEEE
Confidence 9999876 5666677888999988764 4443
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=83.76 E-value=0.24 Score=44.02 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=30.3
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
.||-|.|+ +-+|.++|..|+++|++|++.|++++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~ 37 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN 37 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 47878875 88999999999999999999999865
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=83.53 E-value=0.83 Score=40.06 Aligned_cols=90 Identities=23% Similarity=0.271 Sum_probs=55.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCcc-CCCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDYS-EFKD 387 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~-~~~~ 387 (539)
+|.=||+|. +.++..|++.|++|+++|.+++.++.+.+.. .. ..+.. ..++. .-..
T Consensus 45 ~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~-------~~-------------~~~~~~~~~l~~~~~~ 102 (246)
T d2avna1 45 RVLDLGGGT--GKWSLFLQERGFEVVLVDPSKEMLEVAREKG-------VK-------------NVVEAKAEDLPFPSGA 102 (246)
T ss_dssp EEEEETCTT--CHHHHHHHTTTCEEEEEESCHHHHHHHHHHT-------CS-------------CEEECCTTSCCSCTTC
T ss_pred EEEEECCCC--chhcccccccceEEEEeeccccccccccccc-------cc-------------cccccccccccccccc
Confidence 688999996 6777788999999999999999888775421 00 00110 01111 1134
Q ss_pred cCEEEEc--ccCChhHHHHHHHHHHHhCCCCeEEEe
Q 009256 388 VDMVIEA--VIESVPLKQKIFSELEKACPPHCILAT 421 (539)
Q Consensus 388 aDlVi~a--vpe~~~~~~~~~~~l~~~~~~~~ii~s 421 (539)
-|+|+.. +-+-..-...+++++...++||.+++.
T Consensus 103 fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii 138 (246)
T d2avna1 103 FEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 138 (246)
T ss_dssp EEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred ccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEE
Confidence 6877743 211111233577888899999876653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.51 E-value=0.35 Score=44.73 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=30.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 309 RKVAVIGG-GLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 309 ~kI~iIG~-G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
++|-|.|+ |.+|+.++..|+++||+|+.+|+...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 47888985 99999999999999999999998653
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=83.42 E-value=0.25 Score=43.03 Aligned_cols=31 Identities=26% Similarity=0.203 Sum_probs=29.1
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|.|||+|.-|...|..+++.|.+|+++|.++
T Consensus 6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 8899999999999999999999999999763
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=83.31 E-value=0.3 Score=41.15 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
-|.|||+|..|...|..+++.|.+|++++++
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3889999999999999999999999999864
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.18 E-value=2.1 Score=37.67 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=28.3
Q ss_pred eEEEE-cC-CCCcHHHHHHHHHCCCeEEEEeCChHH
Q 009256 310 KVAVI-GG-GLMGSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 310 kI~iI-G~-G~mG~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
|+++| |+ +-+|.++|..|++.|++|++.+++.+.
T Consensus 8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 45555 65 669999999999999999999998654
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=82.92 E-value=0.53 Score=36.95 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=29.9
Q ss_pred CcceEEEEcCCCC-----------cHHHHHHHHHCCCeEEEEeCChHH
Q 009256 307 GVRKVAVIGGGLM-----------GSGIATAHILNNIYVVLKEVNSEY 343 (539)
Q Consensus 307 ~~~kI~iIG~G~m-----------G~~iA~~l~~~G~~V~~~d~~~~~ 343 (539)
..+||-|||.|.. +...++.|.+.|+++++++-||+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT 50 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET 50 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence 3568999999864 445577888899999999999864
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.83 E-value=1.7 Score=39.90 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=27.8
Q ss_pred eEEEE-c-CCCCcHHHHHHHHHCCCeEEEEeCChH
Q 009256 310 KVAVI-G-GGLMGSGIATAHILNNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iI-G-~G~mG~~iA~~l~~~G~~V~~~d~~~~ 342 (539)
|+++| | .+-+|.++|..|+++|++|++.|++.+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 66666 5 477999999999999999999987653
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=82.44 E-value=0.3 Score=45.51 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=29.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
-|.|||+|.-|.+.|..++++|++|++++..+
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 39999999999999999999999999999753
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=82.21 E-value=1.6 Score=38.48 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=60.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccc-cCCc---cC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKG-VLDY---SE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~---~~ 384 (539)
++|.=||+|. +.++..|++.|.+|+++|.+++.++.+.++... .+. .+++ ..|. +.
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~-------~~~-----------~v~~~~~d~~~~~~ 98 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRS-------QGL-----------KPRLACQDISNLNI 98 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHH-------TTC-----------CCEEECCCGGGCCC
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhccccccc-------cCc-----------cceeeccchhhhcc
Confidence 3788999986 446778888999999999999998888664321 110 1111 1122 22
Q ss_pred CCCcCEEEEcc-----cCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 FKDVDMVIEAV-----IESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 ~~~aDlVi~av-----pe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
-+..|+|+... -.+.+-...+++++.++++|+.+++
T Consensus 99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 24579888521 1234455678899999999987655
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.87 E-value=0.38 Score=45.06 Aligned_cols=33 Identities=30% Similarity=0.187 Sum_probs=29.0
Q ss_pred ceEE-EEc-CCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 309 RKVA-VIG-GGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 309 ~kI~-iIG-~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
+||+ |.| .|.+|+.++..|.++||+|+.+|+.+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~ 35 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS 35 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5785 667 59999999999999999999999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.84 E-value=0.71 Score=42.28 Aligned_cols=102 Identities=19% Similarity=0.201 Sum_probs=60.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCc---
Q 009256 309 RKVAVIGGGLMGSGIATAHILN--NIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDY--- 382 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~--- 382 (539)
++|.|||+|. +.+++.+.+. ..+|+++|++++.++-+.+..... ....+.. +++.. .|.
T Consensus 80 k~vLiiGgG~--G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~-~~~~~d~------------rv~i~~~Da~~~ 144 (285)
T d2o07a1 80 RKVLIIGGGD--GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGM-AIGYSSS------------KLTLHVGDGFEF 144 (285)
T ss_dssp CEEEEEECTT--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHH-HGGGGCT------------TEEEEESCHHHH
T ss_pred CeEEEeCCCc--hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhh-ccccCCC------------CceEEEccHHHH
Confidence 5899999997 4566666665 359999999999999886653211 1111111 11111 110
Q ss_pred --cCCCCcCEEEEcccCChh-----HHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 383 --SEFKDVDMVIEAVIESVP-----LKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 383 --~~~~~aDlVi~avpe~~~-----~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
+.-+.-|+||.-.+++.. ..++.++.+...++++.+++.++.+
T Consensus 145 l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 145 MKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp HHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 112357999866654322 2335577788899999888866543
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.72 E-value=0.33 Score=46.69 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=30.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH------CCCeEEEEeCChH
Q 009256 310 KVAVIGGGLMGSGIATAHIL------NNIYVVLKEVNSE 342 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~------~G~~V~~~d~~~~ 342 (539)
-|.|||+|.-|++.|..|++ +|++|+++|+..+
T Consensus 34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~ 72 (380)
T d2gmha1 34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72 (380)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence 49999999999999999997 8999999998753
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=81.70 E-value=0.15 Score=43.39 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
+|.|||+|..|..+|..|.+.|++|.++.++
T Consensus 5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~ 35 (183)
T d1d7ya1 5 PVVVLGAGLASVSFVAELRQAGYQGLITVVG 35 (183)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence 5999999999999999999999876665543
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.67 E-value=0.3 Score=44.94 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=59.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHH-HhhHhcCCCCHHHHHHHhhccccc---CCccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANV-RGLVTRGKLTQDKANNALKMLKGV---LDYSE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~ 384 (539)
++|.=||+|. +.++..|++.|++|+.+|.+++.++.+.+.....- ........+ ..+... .+...
T Consensus 58 ~~vLD~GcG~--G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 126 (292)
T d1xvaa_ 58 HRVLDVACGT--GVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVI---------EEANWLTLDKDVPA 126 (292)
T ss_dssp CEEEESSCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEE---------EECCGGGHHHHSCC
T ss_pred CEEEEecCCC--cHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeee---------eeccccccccccCC
Confidence 3788899998 55777788999999999999999888766432110 000000000 000000 00011
Q ss_pred CCCcCEEEEcc------cC---ChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 FKDVDMVIEAV------IE---SVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 ~~~aDlVi~av------pe---~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
-...|+|+..- ++ +.+-...+++++..+++|+.+++
T Consensus 127 ~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 127 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence 23567776431 21 22345678899999999987665
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=81.67 E-value=0.38 Score=45.35 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV 339 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~ 339 (539)
-|.|||.|.=|..+|..|+++|++|++++.
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 388999999999999999999999999986
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=81.04 E-value=0.42 Score=45.21 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEV 339 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~ 339 (539)
-|-|||.|.=|+.+|..|+++|++|+++++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 378999999999999999999999999997
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.99 E-value=0.44 Score=41.38 Aligned_cols=31 Identities=26% Similarity=0.203 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHCCCeEEEEeCCh
Q 009256 311 VAVIGGGLMGSGIATAHILNNIYVVLKEVNS 341 (539)
Q Consensus 311 I~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 341 (539)
|.|||+|..|...|..+++.|.+|.++|.+.
T Consensus 6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~ 36 (221)
T d3grsa1 6 YLVIGGGSGGLASARRAAELGARAAVVESHK 36 (221)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence 7899999999999999999999999998753
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.83 E-value=1.3 Score=37.63 Aligned_cols=68 Identities=22% Similarity=0.199 Sum_probs=47.5
Q ss_pred eEEEEcCC--CCcHHHHHHHHHCCCeEEEEeCC-----hHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhcccccCCc
Q 009256 310 KVAVIGGG--LMGSGIATAHILNNIYVVLKEVN-----SEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGVLDY 382 (539)
Q Consensus 310 kI~iIG~G--~mG~~iA~~l~~~G~~V~~~d~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 382 (539)
||++||-| ++..|++..++..|.+|+++.+. ++.++.+.+. ....+ ..+..+++.
T Consensus 7 kia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~-------~~~~~-----------~~~~~~~d~ 68 (185)
T d1dxha2 7 SYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKF-------AEESG-----------AKLTLTEDP 68 (185)
T ss_dssp EEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHH-------HHHHT-----------CEEEEESCH
T ss_pred EEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHH-------hhccC-----------CeEEEEeCh
Confidence 79999954 68899999999999999999863 2333332211 01111 346667777
Q ss_pred -cCCCCcCEEEEcc
Q 009256 383 -SEFKDVDMVIEAV 395 (539)
Q Consensus 383 -~~~~~aDlVi~av 395 (539)
++++++|+|..-.
T Consensus 69 ~eai~~aDvVyt~~ 82 (185)
T d1dxha2 69 KEAVKGVDFVHTDV 82 (185)
T ss_dssp HHHTTTCSEEEECC
T ss_pred hhccccccEEEeeh
Confidence 7899999998655
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=80.69 E-value=0.34 Score=42.26 Aligned_cols=31 Identities=32% Similarity=0.235 Sum_probs=29.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHCCCeEEEEeCC
Q 009256 310 KVAVIGGGLMGSGIATAHILNNIYVVLKEVN 340 (539)
Q Consensus 310 kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~ 340 (539)
.|.|||+|.-|...|..+++.|.+|++++.+
T Consensus 7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 4899999999999999999999999999975
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=80.67 E-value=1.4 Score=38.18 Aligned_cols=93 Identities=18% Similarity=0.098 Sum_probs=57.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCCHHHHHHHhhccccc-CCccC---
Q 009256 309 RKVAVIGGGLMGSGIATAHILNNIYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLTQDKANNALKMLKGV-LDYSE--- 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~--- 384 (539)
++|.=||+|. +.++..+++.|.+|+.+|++++.++.+.+.+.. .+. .++.+. .+.+.
T Consensus 17 ~rVLDiGcG~--G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~-------~~~----------~~i~~~~~d~~~l~~ 77 (231)
T d1vl5a_ 17 EEVLDVATGG--GHVANAFAPFVKKVVAFDLTEDILKVARAFIEG-------NGH----------QQVEYVQGDAEQMPF 77 (231)
T ss_dssp CEEEEETCTT--CHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH-------TTC----------CSEEEEECCC-CCCS
T ss_pred CEEEEecccC--cHHHHHHHHhCCEEEEEECCHHHHhhhhhcccc-------ccc----------ccccccccccccccc
Confidence 4799999995 445567888999999999999998887554321 111 122211 12211
Q ss_pred -CCCcCEEEEc-ccCChhHHHHHHHHHHHhCCCCeEEE
Q 009256 385 -FKDVDMVIEA-VIESVPLKQKIFSELEKACPPHCILA 420 (539)
Q Consensus 385 -~~~aDlVi~a-vpe~~~~~~~~~~~l~~~~~~~~ii~ 420 (539)
-...|+|+.. +.+...-...+++++...++|+..++
T Consensus 78 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~ 115 (231)
T d1vl5a_ 78 TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 115 (231)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred cccccccccccccccccCCHHHHHHHHHHhcCCCcEEE
Confidence 1346888744 22222224567888999999987443
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.19 E-value=0.55 Score=43.89 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=28.7
Q ss_pred cceEEEEc-CCCCcHHHHHHHHHCCCeEEEEeC
Q 009256 308 VRKVAVIG-GGLMGSGIATAHILNNIYVVLKEV 339 (539)
Q Consensus 308 ~~kI~iIG-~G~mG~~iA~~l~~~G~~V~~~d~ 339 (539)
.++|-|.| .|.+|+.++..|.+.||+|+++|+
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 35788887 599999999999999999999986
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=80.13 E-value=2.4 Score=38.72 Aligned_cols=106 Identities=14% Similarity=0.187 Sum_probs=61.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHC-C-CeEEEEeCChHHHHHHHHHHHHHHHhhHhcCCCC--HHHHHHHhhcccccCCccC
Q 009256 309 RKVAVIGGGLMGSGIATAHILN-N-IYVVLKEVNSEYLLKGIKTIEANVRGLVTRGKLT--QDKANNALKMLKGVLDYSE 384 (539)
Q Consensus 309 ~kI~iIG~G~mG~~iA~~l~~~-G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~ 384 (539)
++|.|||+|.- .+++.++++ + -+|+++|+|++.++-+.+..... ....+..++. .++.... +. +.
T Consensus 91 k~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~-~~~~~d~rv~v~~~Da~~~---l~-----~~ 159 (295)
T d1inla_ 91 KKVLIIGGGDG--GTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQT-SCGFDDPRAEIVIANGAEY---VR-----KF 159 (295)
T ss_dssp CEEEEEECTTC--HHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHH-HGGGGCTTEEEEESCHHHH---GG-----GC
T ss_pred ceEEEecCCch--HHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhh-cccccCCCcEEEhhhHHHH---Hh-----cC
Confidence 58999999974 556666664 3 47999999999988876643211 1111111100 0000000 10 11
Q ss_pred CCCcCEEEEcccCCh------hHHHHHHHHHHHhCCCCeEEEecCCC
Q 009256 385 FKDVDMVIEAVIESV------PLKQKIFSELEKACPPHCILATNTST 425 (539)
Q Consensus 385 ~~~aDlVi~avpe~~------~~~~~~~~~l~~~~~~~~ii~s~ts~ 425 (539)
-+.-|+||.-.++.. -...+.++.+.+.++++.+++.++.+
T Consensus 160 ~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 160 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 134799996654321 12357778899999999988876654
|