Citrus Sinensis ID: 009282
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | 2.2.26 [Sep-21-2011] | |||||||
| Q55DL0 | 503 | Dihydropyrimidinase OS=Di | yes | no | 0.897 | 0.960 | 0.517 | 1e-140 | |
| Q9EQF5 | 519 | Dihydropyrimidinase OS=Mu | yes | no | 0.886 | 0.919 | 0.487 | 1e-133 | |
| Q9I676 | 479 | D-hydantoinase/dihydropyr | yes | no | 0.862 | 0.968 | 0.492 | 1e-133 | |
| Q14117 | 519 | Dihydropyrimidinase OS=Ho | yes | no | 0.895 | 0.928 | 0.480 | 1e-129 | |
| Q63150 | 519 | Dihydropyrimidinase OS=Ra | yes | no | 0.886 | 0.919 | 0.475 | 1e-129 | |
| Q59699 | 495 | D-hydantoinase/dihydropyr | yes | no | 0.808 | 0.878 | 0.506 | 1e-129 | |
| Q21773 | 489 | Dihydropyrimidinase 1 OS= | yes | no | 0.860 | 0.946 | 0.480 | 1e-122 | |
| Q61YQ1 | 518 | Dihydropyrimidinase 2 OS= | N/A | no | 0.843 | 0.876 | 0.491 | 1e-122 | |
| Q60Q85 | 489 | Dihydropyrimidinase 1 OS= | N/A | no | 0.860 | 0.946 | 0.474 | 1e-122 | |
| Q18677 | 520 | Dihydropyrimidinase 2 OS= | no | no | 0.843 | 0.873 | 0.497 | 1e-121 |
| >sp|Q55DL0|DPYS_DICDI Dihydropyrimidinase OS=Dictyostelium discoideum GN=pyd2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 253/489 (51%), Positives = 334/489 (68%), Gaps = 6/489 (1%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ + ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGI
Sbjct: 4 VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
D HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A K
Sbjct: 64 DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+C DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCK 182
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 243 VYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRP 302
Query: 346 SGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
K L LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW+
Sbjct: 303 DPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENG 362
Query: 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 464
V +G+++ +VR TS+E ARIFN+YPRKG I VG D DI+I++PN S I+ +HH +
Sbjct: 363 VNTGKLTWCQFVRATSSEAARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAV 422
Query: 465 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYL 524
D N++EG +V G TI G +VW +++L+ V GSG+++ PF +F G+++ D K
Sbjct: 423 DFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD-KVR 481
Query: 525 SSLQAPVKR 533
+ L V R
Sbjct: 482 NELLRKVDR 490
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Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Dictyostelium discoideum (taxid: 44689) EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 2 |
| >sp|Q9EQF5|DPYS_MOUSE Dihydropyrimidinase OS=Mus musculus GN=Dpys PE=2 SV=2 | Back alignment and function description |
|---|
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/488 (48%), Positives = 322/488 (65%), Gaps = 11/488 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD----VKVLDATGKFVMPGGID 109
++LI+GG +VN Q+ADV VEDG+V A+ ++ +D +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF+ G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W + V +EM+ + ++KG+NSFK FMAYKG +M+ DE L F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + +A AR+AG V GEP+ +GL D W ++ AA +VM PP+R
Sbjct: 246 VVHVMSKSAAKVVADARRAGNVVYGEPIAAGLGTDGRQYWSEEWSHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L G+D+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 306 LTPGFLMDLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466
SG++ +V +TST A+IFN+YP+KG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRRISAKTHHQAVNF 425
Query: 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLS 525
N++EG G VTI+ GRVV+E NV G GK+I +PF Y++ + + D +
Sbjct: 426 NIFEGMVCHGVPLVTISRGRVVYEAGVFNVTAGHGKFIPRQPFAEYIYKRIKQRDQ---T 482
Query: 526 SLQAPVKR 533
PVKR
Sbjct: 483 CTPVPVKR 490
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Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q9I676|HYDA_PSEAE D-hydantoinase/dihydropyrimidinase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dht PE=3 SV=1 | Back alignment and function description |
|---|
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 229/465 (49%), Positives = 312/465 (67%), Gaps = 1/465 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LI+G TVV ADV +G++ A+ N+ VLD G+++MPGGIDPHTH+
Sbjct: 3 LLIRGATVVTHEESYRADVLCANGLIQAIGENLETPSGCDVLDGGGQYLMPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGF 173
+ FMG+ +DFFSG AA LAGGTT IDFVIP SL F + A+ S DYGF
Sbjct: 63 QLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPRQSLLEAFHTWRGWAQKSAADYGF 122
Query: 174 HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+AIT W + V+ EM +V + G+NSFK FMAYK + M D+ L+ F+RC LGA+ V
Sbjct: 123 HVAITWWSDEVAREMGELVAQHGVNSFKHFMAYKNAIMAADDTLVASFERCLELGAVPTV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENG+ VF Q++++ G+TGPE H LSRPP +EGEA +RAIR+AE + TPLY+VH+ S
Sbjct: 183 HAENGELVFHLQQKLLAQGLTGPEAHPLSRPPQVEGEAASRAIRIAETLGTPLYLVHISS 242
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
+A++EIA AR GQ V GE + L+LDDS H D+ TAA YVMSPP R H +AL
Sbjct: 243 REALDEIAYARAKGQPVYGEVLAGHLLLDDSVYRHPDWATAAGYVMSPPFRPVEHQEALW 302
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413
L +G L TDHC F + QKA G DDF KIPNG GIE+RM L+WD V SG++S+
Sbjct: 303 RGLQSGNLHTTATDHCCFCAEQKAMGRDDFSKIPNGTAGIEDRMALLWDAGVNSGRLSMH 362
Query: 414 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473
++V LTST A+IFN++PRKGAI VG+DAD+++++P S ++A +HH R+D N++EGR
Sbjct: 363 EFVALTSTNTAKIFNLFPRKGAIRVGADADLVLWDPQGSRTLSAATHHQRVDFNIFEGRT 422
Query: 474 VKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDK 518
V+G TI+ G+++W +L PG+G+Y+E + ++ L +
Sbjct: 423 VRGIPSHTISQGKLLWAAGDLRAEPGAGRYVERPAYPSVYEVLGR 467
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Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q14117|DPYS_HUMAN Dihydropyrimidinase OS=Homo sapiens GN=DPYS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/493 (48%), Positives = 320/493 (64%), Gaps = 11/493 (2%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVM 104
+ + S++LI+GG VVN ++ADV VEDG+V A+ P ++VLDA GK V+
Sbjct: 1 MAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVL 60
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID HTH+ FMGS +IDDF G AAL+GGTTM IDF IP G SL FE +
Sbjct: 61 PGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSW 120
Query: 164 AKNS-CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A C DY H+A+T W + V +EM+++V++KG+NSFK FMAYK +M+ D L E F
Sbjct: 121 ADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFS 180
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A V
Sbjct: 181 RCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAV 240
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
N PLY+VHVMS A + IA AR+ G+ V GEP+ + L D + W+ ++ AA +VM PP
Sbjct: 241 NCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPP 300
Query: 343 IRASGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401
+R L LA L GTD+C FN+ QKA G DDF KIPNGVNG+E+RM ++W
Sbjct: 301 LRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIW 360
Query: 402 DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH 461
+ V SG++ +V +TST A+IFN+YPRKG I VGSDADI+I++P + I+A++HH
Sbjct: 361 EKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKTHH 420
Query: 462 SRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKAD 520
++ N++EG G VTI+ G+VV+E +V G GK+I +PF Y++ + + D
Sbjct: 421 QAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFAEYIYKRIKQRD 480
Query: 521 AKYLSSLQAPVKR 533
+ PV+R
Sbjct: 481 R---TCTPTPVER 490
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Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q63150|DPYS_RAT Dihydropyrimidinase OS=Rattus norvegicus GN=Dpys PE=1 SV=2 | Back alignment and function description |
|---|
Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/488 (47%), Positives = 320/488 (65%), Gaps = 11/488 (2%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQ----PNINVGDDVKVLDATGKFVMPGGID 109
++LI+GG VVN Q+ADV VEDG+V A+ P + +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRVVNDDFSQVADVLVEDGVVRALGRDLLPPGDTSRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFHQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W + V +EM+ + ++KG+NSFK FMAYK +M+ D+ + F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVQDQQMYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
+VHVMS A + IA A++ G+ V GEP+ +GL D + W+ ++ AA +VM PP+R
Sbjct: 246 IVHVMSKSAAKVIADAKREGKVVYGEPIAAGLGTDGTQYWNKEWRHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L G+D+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 306 STPGFLMNLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466
SG++ +V +TST A+IFN+YP+KG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRTISAKTHHQAVNF 425
Query: 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLS 525
N++EG G VTI+ GRVV+E +V G GK+I +PF +++ + + D +
Sbjct: 426 NIFEGMVCHGVPLVTISRGRVVYEAGVFDVTAGHGKFIPRQPFAEFIYKRVKQRDQ---T 482
Query: 526 SLQAPVKR 533
PVKR
Sbjct: 483 CTPIPVKR 490
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Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. Can catalyzes the ring opening of 5,6-dihydrouracil to N-carbamyl-alanine and of 5,6-dihydrothymine to N-carbamyl-amino isobutyrate. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q59699|HYDA_PSEPU D-hydantoinase/dihydropyrimidinase OS=Pseudomonas putida GN=dht PE=1 SV=2 | Back alignment and function description |
|---|
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/436 (50%), Positives = 300/436 (68%), Gaps = 1/436 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LI+G TVV ADV DG++ A+ PN+ D ++LD +G+++MPGGIDPHTH+
Sbjct: 3 LLIRGATVVTHEESYPADVLCVDGLIRAIGPNLEPPTDCEILDGSGQYLMPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGF 173
+ FMG+ +DFFSG AA LAGGTT IDFVIP SL F + A+ S DYGF
Sbjct: 63 QLPFMGTVASEDFFSGTAAGLAGGTTSIIDFVIPNPQQSLLEAFHTWRGWAQKSASDYGF 122
Query: 174 HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+AIT W E V++EM +V + G+NSFK FMAYK + M D+ L+ F+RC LGA+ V
Sbjct: 123 HVAITWWSEQVAEEMGELVAKHGVNSFKHFMAYKNAIMAADDTLVASFERCLQLGAVPTV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENG+ V+ QK+++ G+TGPE H LSRP +EGEA +RAIR+AE + TPLYVVH+ S
Sbjct: 183 HAENGELVYHLQKKLLAQGMTGPEAHPLSRPSQVEGEAASRAIRIAETIGTPLYVVHISS 242
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
+A++EI AR GQ V GE + L+LDDS D+ TAA YVMSPP R H +AL
Sbjct: 243 REALDEITYARAKGQPVYGEVLPGHLLLDDSVYRDPDWATAAGYVMSPPFRPREHQEALW 302
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413
L +G L TDHC F + QKA G DDF +IPNG GIE+RM ++WD V SG++S+
Sbjct: 303 RGLQSGNLHTTATDHCCFCAEQKAMGRDDFSRIPNGTAGIEDRMAVLWDAGVNSGRLSMH 362
Query: 414 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473
++V LTST A+IFN++PRKGAI VG+DAD+++++P + ++A++HH R+D N++EGR
Sbjct: 363 EFVALTSTNTAKIFNLFPRKGAIRVGADADLVLWDPQGTRTLSAQTHHQRVDFNIFEGRT 422
Query: 474 VKGKVEVTIAGGRVVW 489
V+G TI+ G+V+W
Sbjct: 423 VRGVPSHTISQGKVLW 438
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Catalyzes the hydrolysis of dihydropyrimidines and of the structurally related DL-5-mono-substituted hydantoins, to produce N-carbamoyl-D-amino acids. Pseudomonas putida (taxid: 303) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q21773|DHP1_CAEEL Dihydropyrimidinase 1 OS=Caenorhabditis elegans GN=dhp-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/472 (48%), Positives = 300/472 (63%), Gaps = 9/472 (1%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTVVN ADV V +GI+V V PNI D +V+DAT + V+PGGIDPH
Sbjct: 2 SPPLVIKNGTVVNEDGMFKADVLVRNGIIVEVSPNITALPDTEVIDATDRLVIPGGIDPH 61
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP--ING-SLTAGFEAYEKKAKNS- 167
TH+ M +MG T DDF G AA+AGGTTM IDF P NG SL AG+ + A
Sbjct: 62 THMQMPYMGEVTKDDFLKGTEAAVAGGTTMIIDFCCPDHRNGESLIAGYNRWRSWADPKV 121
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DYG +AIT W +++M ++ E G+NSFKF+MAY+ + M+ D+ L G + C
Sbjct: 122 CCDYGLSVAITMWRPETAEQMAIITSPEFGVNSFKFYMAYENTLMVRDDELFRGMQECAK 181
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
L ALA VH ENG + E + ++ G+TGPEGH SRP +E EAT RA LA N P+
Sbjct: 182 LRALARVHCENGSVIKEKEIDLLAKGVTGPEGHTQSRPEEIEAEATNRACVLAAQANCPV 241
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RA 345
Y+VHVM+ A I+ R G V GEP+ +GL LD S ++ D++ AA+YVMSPP+ R
Sbjct: 242 YIVHVMTKGAASAISHHRAQGSIVFGEPIAAGLALDGSHYYNEDWLHAARYVMSPPLSRD 301
Query: 346 SGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
+ L LA G L L GTD+C ++ QK+ G +F KIPNG+NG+E+RM +VW+ V
Sbjct: 302 PTTPELLMKLLAAGELHLTGTDNCTYDCRQKSLGKGNFTKIPNGINGVEDRMSVVWEKGV 361
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
SG I YV +TS+ A+IFN+YPRKG I VGSDADI+IFNPN++ I+ +HH LD
Sbjct: 362 HSGIIDPMRYVSITSSTAAKIFNIYPRKGRIAVGSDADIVIFNPNATRTISKDTHHHNLD 421
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM---RPFNYLFH 514
N++EG G EVTI+ GR+VW + +L VPGSGK+I + PF + H
Sbjct: 422 FNIFEGINCHGVAEVTISRGRIVWAHGKLQTVPGSGKFIPLLANSPFVFSTH 473
|
Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q61YQ1|DHP2_CAEBR Dihydropyrimidinase 2 OS=Caenorhabditis briggsae GN=dhp-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/458 (49%), Positives = 297/458 (64%), Gaps = 4/458 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK GT+VN +DV V DG +V + P+I+ ++V+DAT +FV+PGGIDPHTH+
Sbjct: 3 LLIKNGTIVNDDAMFKSDVLVHDGKIVEIAPSIDPTPGLEVVDATDRFVIPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYG 172
+ FMG DDF G AA+AGGTTM IDFVIP G SL ++ + A + DYG
Sbjct: 63 QLPFMGEVAKDDFHRGTEAAVAGGTTMIIDFVIPTKGESLLVAYDRWRGWADPKVVCDYG 122
Query: 173 FHMAITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
MAIT W + ++ EME++ K + GINSFKFF+AY G FM+ DE +G +C L ALA
Sbjct: 123 LSMAITSWGQEIAKEMEMVTKADYGINSFKFFLAYAGVFMVRDEEFYQGMLQCAKLRALA 182
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENG + E + ++ GITGPEGH SRP LE EAT RA +A N PLYVVHV
Sbjct: 183 RVHAENGAVIAERCEHLLSSGITGPEGHTQSRPEELEAEATFRACTMASQANCPLYVVHV 242
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RASGHNK 350
MS A IA RK G V GEP+ +GL D S ++ D++ AA+Y+MSPP+ R
Sbjct: 243 MSKGAAAAIAHHRKKGAVVFGEPIAAGLATDGSHYYNEDWLHAARYIMSPPLSRDPSTPN 302
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
AL LA G L L TD+C F+ QK+ G DDF KIPNGVNG+E+RM +VWD V +G I
Sbjct: 303 ALMKLLAAGELHLTATDNCTFDCHQKSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGII 362
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
+V +TST A+IFN YPRKG I VGSDADI+++N N++ I+ +HH +D N++E
Sbjct: 363 DPMKFVAVTSTMAAKIFNCYPRKGRIAVGSDADIVVWNANATRTISKDTHHHAIDFNIFE 422
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 508
G +V G E TI GR+VW + +L V G+G+++ + P
Sbjct: 423 GMQVHGVPETTICRGRIVWADGQLRTVQGAGRFVPLPP 460
|
Caenorhabditis briggsae (taxid: 6238) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q60Q85|DHP1_CAEBR Dihydropyrimidinase 1 OS=Caenorhabditis briggsae GN=dhp-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/472 (47%), Positives = 303/472 (64%), Gaps = 9/472 (1%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTVVN ADV V++GI+V V P I +++++DAT + V+PGGIDPH
Sbjct: 2 SPPLVIKNGTVVNEDGMFKADVLVKNGIIVEVSPKIIALPEMEIIDATDRLVIPGGIDPH 61
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP--ING-SLTAGFEAYEKKAKNS- 167
TH+ M + G T DDF G AA+AGGTTM IDF P NG SL AG+ + A
Sbjct: 62 THMQMPYAGEVTKDDFLRGTQAAVAGGTTMIIDFCCPDHRNGESLMAGYARWRSWADPKV 121
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DYG +AIT+W +D+M V+ E G+NSFKF+MAY+G+ M+ D+ + + C
Sbjct: 122 CCDYGLSVAITQWRPETADQMAVITSPEFGVNSFKFYMAYEGTLMVRDDEMYRAMQECAK 181
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
L ALA VHAENG + E + ++ G+TGPEGH SRP +E EAT RA LA N P+
Sbjct: 182 LRALARVHAENGSVIKEREIDLLAKGVTGPEGHTQSRPEEIEAEATNRACVLAAQANCPV 241
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RA 345
Y+VHVM+ A I+ R G V GEP+ +GL LD S ++ D++ AA+YVMSPP+ R
Sbjct: 242 YIVHVMTKGAAAAISHHRAQGSIVFGEPIAAGLALDGSHYYNEDWLHAARYVMSPPLSRD 301
Query: 346 SGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
+ L LA G L L GTD+C ++ QK+ G +F KIPNG+NG+E+RM +VW+ V
Sbjct: 302 PTTPELLMKLLAAGELHLTGTDNCTYDGCQKSLGKGNFTKIPNGINGVEDRMSVVWEKGV 361
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
SG I YV +TS A+IFN+YP+KG I VGSDADI+IFNPN++ I+A +HH LD
Sbjct: 362 HSGIIDPMRYVSITSATAAKIFNIYPKKGRIAVGSDADIVIFNPNATRTISAETHHHNLD 421
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM---RPFNYLFH 514
N++EG + G E+TI+ GR+VW N +L VPGSGK++ + PF + H
Sbjct: 422 FNIFEGIKCHGVAEITISRGRIVWANGQLQTVPGSGKFVPLLANSPFVFSSH 473
|
Caenorhabditis briggsae (taxid: 6238) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
| >sp|Q18677|DHP2_CAEEL Dihydropyrimidinase 2 OS=Caenorhabditis elegans GN=dhp-2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/458 (49%), Positives = 294/458 (64%), Gaps = 4/458 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK GT+VN +DV V DG +V + P+I ++V+DAT + V+PGGIDPHTH+
Sbjct: 3 LLIKNGTIVNDDAIFKSDVLVLDGRIVEIAPSIQPTPGLEVVDATDRLVIPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYG 172
+ FMG DDF G AA+AGGTTM IDFVIP G SL ++ + A + DYG
Sbjct: 63 QLPFMGEIAKDDFHRGTEAAVAGGTTMIIDFVIPTKGESLLVAYDRWRGWADPKVVCDYG 122
Query: 173 FHMAITKWDEVVSDEMEVMV-KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
MAIT W ++ EME++ E GINSFKFF+AY G FM+ DE +G +C L ALA
Sbjct: 123 LSMAITSWGPEIAKEMEIVTGAEYGINSFKFFLAYAGVFMVRDEEFYQGMIQCAKLRALA 182
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENG + E + ++ GITGPEGH SRP LE EAT RA +A N PLYVVHV
Sbjct: 183 RVHAENGSVIAERCEHLLSSGITGPEGHTQSRPEELEAEATFRACTMASQANCPLYVVHV 242
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI-RASGHNK 350
MS A IA RK G V GEP+ +GL D S ++ D++ AA+YVMSPP+ R
Sbjct: 243 MSKGAAAAIAHHRKKGAVVFGEPIAAGLATDGSHYYNEDWLHAARYVMSPPLSRDPSTPS 302
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
AL LA G L L TD+C F+ QK+ G DDF KIPNGVNG+E+RM +VWD V +G I
Sbjct: 303 ALMKLLAAGELHLTATDNCTFDCQQKSLGKDDFTKIPNGVNGVEDRMSVVWDKGVHAGII 362
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
+V +TST A+IFN YP+KG I VGSDADI+I+N N++ I+ +HH +D N++E
Sbjct: 363 DPMRFVAVTSTMAAKIFNCYPQKGRIAVGSDADIVIWNANATRTISKDTHHHAIDFNIFE 422
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 508
G +V G E+TI+ GR VW N +L V GSG++I + P
Sbjct: 423 GMQVHGVPEITISRGRTVWANGQLKTVQGSGQFIPLAP 460
|
Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 5 EC: . EC: 2 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| 359479124 | 536 | PREDICTED: dihydropyrimidinase-like [Vit | 0.936 | 0.940 | 0.857 | 0.0 | |
| 224103983 | 531 | predicted protein [Populus trichocarpa] | 0.951 | 0.964 | 0.835 | 0.0 | |
| 357493879 | 542 | Dihydropyrimidinase [Medicago truncatula | 0.966 | 0.959 | 0.819 | 0.0 | |
| 297811343 | 531 | dihydropyrimidinase [Arabidopsis lyrata | 0.960 | 0.973 | 0.814 | 0.0 | |
| 42567801 | 531 | pyrimidine 2 [Arabidopsis thaliana] gi|2 | 0.960 | 0.973 | 0.808 | 0.0 | |
| 224059686 | 506 | predicted protein [Populus trichocarpa] | 0.936 | 0.996 | 0.839 | 0.0 | |
| 449444857 | 528 | PREDICTED: dihydropyrimidinase-like [Cuc | 0.966 | 0.984 | 0.808 | 0.0 | |
| 356554724 | 524 | PREDICTED: dihydropyrimidinase-like [Gly | 0.920 | 0.944 | 0.835 | 0.0 | |
| 357493867 | 534 | Dihydropyrimidinase [Medicago truncatula | 0.966 | 0.973 | 0.800 | 0.0 | |
| 358249144 | 526 | uncharacterized protein LOC100781590 pre | 0.977 | 1.0 | 0.788 | 0.0 |
| >gi|359479124|ref|XP_002273526.2| PREDICTED: dihydropyrimidinase-like [Vitis vinifera] gi|296083879|emb|CBI24267.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/506 (85%), Positives = 473/506 (93%), Gaps = 2/506 (0%)
Query: 35 FCDAGSEYGGPQCGI--QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
FCDAG+ +G C + +S+SK+LIKGGTVVNAHHQ+IADVYVEDGI+VAV+PNI VGDD
Sbjct: 31 FCDAGTGFGDSGCVVSSKSASKLLIKGGTVVNAHHQEIADVYVEDGIIVAVKPNIKVGDD 90
Query: 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS 152
V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+ GS
Sbjct: 91 VTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVKGS 150
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
L+ G EAY+ KAK SCMDYGFHMAITKWDE VS EME+MVKEKGINSFKFF+AYKG+ MI
Sbjct: 151 LSKGLEAYKDKAKKSCMDYGFHMAITKWDENVSREMEIMVKEKGINSFKFFLAYKGALMI 210
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
NDELL+EG K+CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP+LEGEAT
Sbjct: 211 NDELLLEGLKKCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPVLEGEAT 270
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIGEPVVSGLVLDDS LW DF+
Sbjct: 271 ARAIRLASFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVVSGLVLDDSGLWDPDFI 330
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392
AAKYVMSPPIRA GH+KALQAAL+TG LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG
Sbjct: 331 NAAKYVMSPPIRALGHDKALQAALSTGNLQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 390
Query: 393 IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 452
IEERMHLVWDTMVESGQISVTDYVR+TSTECARIFN+YPRKGAIL GSDADIII NPNSS
Sbjct: 391 IEERMHLVWDTMVESGQISVTDYVRITSTECARIFNMYPRKGAILAGSDADIIILNPNSS 450
Query: 453 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYL 512
F+ITARSHHSRLDTNV+EGR+ KGKVEVTIAGG++VWENDEL VPGSGKYIEM+PF+YL
Sbjct: 451 FQITARSHHSRLDTNVFEGRKGKGKVEVTIAGGKIVWENDELKAVPGSGKYIEMQPFSYL 510
Query: 513 FHGLDKADAKYLSSLQAPVKRLKSST 538
F+G+DK DAKYLSSLQAPV+R K+++
Sbjct: 511 FNGIDKVDAKYLSSLQAPVQRSKAAS 536
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103983|ref|XP_002313270.1| predicted protein [Populus trichocarpa] gi|222849678|gb|EEE87225.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/512 (83%), Positives = 471/512 (91%)
Query: 27 PISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN 86
P + +N FC+AG YG CG+ SS+K+LIKGGTVVNAHHQ++ADVYVEDGI+VAV+P+
Sbjct: 20 PSNSQSNQFCEAGIGYGEVGCGLSSSTKLLIKGGTVVNAHHQEVADVYVEDGIIVAVKPD 79
Query: 87 INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFV 146
+ V DDVKV+DATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDFV
Sbjct: 80 LKVTDDVKVIDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDFV 139
Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
IP+NGSL AG E+YE+KAK SCMDYGFHMAITK+D+ VS +ME+MVKEKGINSFKFF+AY
Sbjct: 140 IPVNGSLIAGLESYEEKAKKSCMDYGFHMAITKFDDSVSRDMEIMVKEKGINSFKFFLAY 199
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
KGS M+NDELL+EG KRCKSLGALAMVHAENGDAVFEGQKRMI+LGITGPEGHALSRPPL
Sbjct: 200 KGSLMVNDELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPL 259
Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326
LEGEAT RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRV+GEPVVSGLVLDDS L
Sbjct: 260 LEGEATARAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSGQRVVGEPVVSGLVLDDSGL 319
Query: 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKI 386
W SDF A+K+VMSPPIRA+GHNK LQ AL+ G+LQLVGTDHC FNSTQKAFGIDDFRKI
Sbjct: 320 WDSDFAIASKFVMSPPIRAAGHNKVLQGALSNGVLQLVGTDHCVFNSTQKAFGIDDFRKI 379
Query: 387 PNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 446
PNGVNGIEERMHLVWDTMVESGQIS+ D+VR+TSTECAR+FN+YPRKGAI+ GSDADIII
Sbjct: 380 PNGVNGIEERMHLVWDTMVESGQISINDFVRVTSTECARVFNIYPRKGAIIAGSDADIII 439
Query: 447 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 506
NPNSSFEI ARSHHSR DTNVYEGRR KGKVEVTIAGGRVVWEN+EL VVPGSGKYIEM
Sbjct: 440 LNPNSSFEINARSHHSRTDTNVYEGRRGKGKVEVTIAGGRVVWENNELKVVPGSGKYIEM 499
Query: 507 RPFNYLFHGLDKADAKYLSSLQAPVKRLKSST 538
PFNYLF G+DKADA Y+SSL APVKR KS+T
Sbjct: 500 PPFNYLFSGIDKADASYISSLNAPVKRSKSTT 531
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493879|ref|XP_003617228.1| Dihydropyrimidinase [Medicago truncatula] gi|355518563|gb|AET00187.1| Dihydropyrimidinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 902 bits (2330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/526 (81%), Positives = 471/526 (89%), Gaps = 6/526 (1%)
Query: 18 LLLLLLYFPPIS---ESNNLFCDAGSEYGGPQCGIQSS---SKILIKGGTVVNAHHQQIA 71
L L++ P S +N FC AG YG CG SS +K+LIKGGTVVNAHHQQIA
Sbjct: 16 LFFLIITITPSSLAQSQHNQFCVAGIGYGESTCGTSSSSSSNKLLIKGGTVVNAHHQQIA 75
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
DVYVEDGI+VAV P I VGDDV V+DATGKFVMPGGIDPHTHL MEFM + +DDFFSGQ
Sbjct: 76 DVYVEDGIIVAVNPTIAVGDDVYVIDATGKFVMPGGIDPHTHLEMEFMNTVAVDDFFSGQ 135
Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191
AAALAGGTTMHIDFVIP NGSLTAGFEAYEKKAK SCMDYGFHMAITKWDE VS EME+M
Sbjct: 136 AAALAGGTTMHIDFVIPTNGSLTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELM 195
Query: 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
VKEKGINSFKFFMAYKGS MI+DELL+EGFK+CKSLGALAMVHAENGDAV+EGQK+MIEL
Sbjct: 196 VKEKGINSFKFFMAYKGSLMISDELLLEGFKKCKSLGALAMVHAENGDAVYEGQKKMIEL 255
Query: 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311
GITGPEGHALSRP +LEGEAT RAIRLA+FVNTPLYVVHVMS+DAMEE+AKARK+GQRVI
Sbjct: 256 GITGPEGHALSRPAVLEGEATARAIRLADFVNTPLYVVHVMSIDAMEEVAKARKSGQRVI 315
Query: 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371
GEPV+SGL LDDSWLWH DF TAAKYVMSPPIR GH+KALQAAL+TG+LQLVGTDHC F
Sbjct: 316 GEPVLSGLALDDSWLWHPDFDTAAKYVMSPPIRKQGHDKALQAALSTGVLQLVGTDHCVF 375
Query: 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 431
NSTQKAFGIDDFRKIPNGVNGIEERM +VWD MVESGQISVTDYVRLTSTECARIFN+YP
Sbjct: 376 NSTQKAFGIDDFRKIPNGVNGIEERMRVVWDIMVESGQISVTDYVRLTSTECARIFNIYP 435
Query: 432 RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
+KGAIL GSDADIII NPNSSF+ITA+SHHSR+DTNVYEGR+ KGK+EVT+AGGRVVWEN
Sbjct: 436 KKGAILPGSDADIIILNPNSSFDITAKSHHSRVDTNVYEGRKGKGKIEVTVAGGRVVWEN 495
Query: 492 DELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKSS 537
+EL VVPGSG+YI+M PF+YLF G+DK DA YL+SLQAPVKR KS+
Sbjct: 496 NELKVVPGSGRYIQMAPFSYLFDGIDKKDAAYLNSLQAPVKRAKST 541
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811343|ref|XP_002873555.1| dihydropyrimidinase [Arabidopsis lyrata subsp. lyrata] gi|297319392|gb|EFH49814.1| dihydropyrimidinase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/518 (81%), Positives = 469/518 (90%), Gaps = 1/518 (0%)
Query: 19 LLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDG 78
L LL P +S+S FC AG EYG CG+ SS++ILIKGG VVNAHHQ++ADVYVEDG
Sbjct: 12 LFLLFPSPSVSDSTTQFCSAGGEYGVGSCGV-SSTRILIKGGIVVNAHHQELADVYVEDG 70
Query: 79 IVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138
I+VAVQPNI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGG
Sbjct: 71 IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130
Query: 139 TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
TTMHIDFVIPING+L AGFEAYE K++ SCMDYGFHMAITKWDE VS +ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPINGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEILVKEKGIN 190
Query: 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258
SFKFF+AYKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250
Query: 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318
HALSRPP+LEGEAT RAIRLA FVNTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSG
Sbjct: 251 HALSRPPVLEGEATARAIRLARFVNTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSG 310
Query: 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAF 378
L+LDD WLW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA
Sbjct: 311 LILDDHWLWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKAL 370
Query: 379 GIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILV 438
G+DDFRKIPNGVNG+EERMHL+WDTMV SGQIS TDYVR+TSTE ARIFN+YPRKGAIL
Sbjct: 371 GLDDFRKIPNGVNGLEERMHLIWDTMVGSGQISATDYVRITSTESARIFNIYPRKGAILA 430
Query: 439 GSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498
GSDADIII NPNSS+EI+++SHHSR DTNVYEGRR KGKVEVTIAGGR+VWEN+EL VVP
Sbjct: 431 GSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRIVWENEELKVVP 490
Query: 499 GSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKS 536
GSGKYIEM PF+YLF G++K+DA YLSSL+APVKR+++
Sbjct: 491 GSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPVKRVRT 528
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42567801|ref|NP_568258.2| pyrimidine 2 [Arabidopsis thaliana] gi|28194047|gb|AAO33381.1|AF465755_1 dihydropyrimidine amidohydrolase [Arabidopsis thaliana] gi|9759387|dbj|BAB10038.1| dihydropyrimidinase [Arabidopsis thaliana] gi|332004390|gb|AED91773.1| pyrimidine 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/518 (80%), Positives = 469/518 (90%), Gaps = 1/518 (0%)
Query: 19 LLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDG 78
L LL P SES FC AG E G CG+ SS++ILIKGGTVVNAHHQ++ADVYVE+G
Sbjct: 12 LFLLFPSPSASESTTQFCSAGRENGVGSCGV-SSTRILIKGGTVVNAHHQELADVYVENG 70
Query: 79 IVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138
I+VAVQPNI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGG
Sbjct: 71 IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130
Query: 139 TTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGIN 198
TTMHIDFVIP+NG+L AGFEAYE K++ SCMDYGFHMAITKWDE VS +ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGIN 190
Query: 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258
SFKFF+AYKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250
Query: 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318
HALSRPP+LEGEAT RAIRLA F+NTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSG
Sbjct: 251 HALSRPPVLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSG 310
Query: 319 LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAF 378
L+LDD WLW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA
Sbjct: 311 LILDDHWLWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKAL 370
Query: 379 GIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILV 438
G+DDFR+IPNGVNG+EERMHL+WDTMVESGQ+S TDYVR+TSTECARIFN+YPRKGAIL
Sbjct: 371 GLDDFRRIPNGVNGLEERMHLIWDTMVESGQLSATDYVRITSTECARIFNIYPRKGAILA 430
Query: 439 GSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498
GSDADIII NPNSS+EI+++SHHSR DTNVYEGRR KGKVEVTIAGGR+VWEN+EL VVP
Sbjct: 431 GSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRIVWENEELKVVP 490
Query: 499 GSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKS 536
SGKYIEM PF+YLF G++K+DA YLSSL+APVKR+++
Sbjct: 491 RSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPVKRVRT 528
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059686|ref|XP_002299970.1| predicted protein [Populus trichocarpa] gi|222847228|gb|EEE84775.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/505 (83%), Positives = 463/505 (91%), Gaps = 1/505 (0%)
Query: 35 FCDAGSEYGGPQCGIQSSS-KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV 93
FC+AG Y CGI SSS K+LIKGGTVVNAHHQ+IADVYV+DGI+VAV+PN+ VGDDV
Sbjct: 2 FCEAGIGYDEVGCGISSSSTKLLIKGGTVVNAHHQEIADVYVKDGIIVAVKPNLRVGDDV 61
Query: 94 KVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
KV+DATGKFVMPGGIDPHTHLA+E + +E++DDFFSGQAAALAGGTTMHIDFVIP+NGSL
Sbjct: 62 KVIDATGKFVMPGGIDPHTHLAVEALNTESVDDFFSGQAAALAGGTTMHIDFVIPVNGSL 121
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
AG +AYEKKAK SCMDYGFHM ITK+D++VS +ME+MVKEKGINSFKFF+AYKG M+N
Sbjct: 122 IAGLKAYEKKAKKSCMDYGFHMVITKFDDIVSRDMEIMVKEKGINSFKFFLAYKGVLMVN 181
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
DELL+EG KRCKSLGALAMVHAENGDAVFEGQKRMI+LGITGPEGHALSRPPLLEGEAT
Sbjct: 182 DELLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIQLGITGPEGHALSRPPLLEGEATA 241
Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333
RAIRLA FVNTPLYVVHVMS+DAMEEIAKARK+GQRV+GEPVVSGL LDDS LW SDF T
Sbjct: 242 RAIRLAGFVNTPLYVVHVMSIDAMEEIAKARKSGQRVVGEPVVSGLALDDSGLWDSDFTT 301
Query: 334 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393
A+KYVMSPPIRASGH KALQ AL+ G+LQLVGTDHC FNSTQKA GIDDFRKIPNGVNGI
Sbjct: 302 ASKYVMSPPIRASGHGKALQDALSNGVLQLVGTDHCVFNSTQKASGIDDFRKIPNGVNGI 361
Query: 394 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 453
EERMHLVWD MVESGQISVTDYVR+TSTECARIFN+YPRKGAI+ GSDADIII NPNS+F
Sbjct: 362 EERMHLVWDLMVESGQISVTDYVRVTSTECARIFNIYPRKGAIIAGSDADIIILNPNSTF 421
Query: 454 EITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLF 513
EI ARSHHSR DTNVYEGRR KGKVEVTIAGGRVVWEN+EL VVPGSGKYIEM PF+YLF
Sbjct: 422 EINARSHHSRTDTNVYEGRRGKGKVEVTIAGGRVVWENNELKVVPGSGKYIEMAPFSYLF 481
Query: 514 HGLDKADAKYLSSLQAPVKRLKSST 538
G+D+ADA YLSSL APVKR KS+T
Sbjct: 482 SGIDRADASYLSSLNAPVKRFKSTT 506
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444857|ref|XP_004140190.1| PREDICTED: dihydropyrimidinase-like [Cucumis sativus] gi|449480993|ref|XP_004156050.1| PREDICTED: dihydropyrimidinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/521 (80%), Positives = 476/521 (91%), Gaps = 1/521 (0%)
Query: 18 LLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVED 77
L++L+ I+ES+ FCDAG CGI SSSK+LIKGGTVVNAHHQ++ADVYVED
Sbjct: 9 LIILISSLCFIAESDQ-FCDAGIGIDKSTCGITSSSKLLIKGGTVVNAHHQEVADVYVED 67
Query: 78 GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAG 137
GI+VAV+ NI VGDDV V+DATGK+VMPGGIDPHTHLA EFMG+ET+DDFF+GQAAALAG
Sbjct: 68 GIIVAVKRNIKVGDDVAVVDATGKYVMPGGIDPHTHLAFEFMGTETVDDFFTGQAAALAG 127
Query: 138 GTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
GTTMHIDFVIP+NGSL+AGFE+Y KKAK SCMDYGFHMAITKWDEVV+ EME+MVKEKGI
Sbjct: 128 GTTMHIDFVIPVNGSLSAGFESYVKKAKKSCMDYGFHMAITKWDEVVAQEMEIMVKEKGI 187
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257
NSFKFF+AYKG+ MI+DELL++G K+CKSLGALAMVHAENGDAVFEGQ+RMIELGITGPE
Sbjct: 188 NSFKFFLAYKGALMISDELLLQGLKKCKSLGALAMVHAENGDAVFEGQERMIELGITGPE 247
Query: 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317
GHALSRP +LEGEAT+RAIRLA FVNTPLYVVHVMS+DAMEEIAKARKAGQ+VIGEPVVS
Sbjct: 248 GHALSRPAVLEGEATSRAIRLASFVNTPLYVVHVMSIDAMEEIAKARKAGQKVIGEPVVS 307
Query: 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377
GLVLD+S LW DFVTAAKYVMSPPIR+SGH+KALQAAL+TG+LQLVGTDHC FNSTQK+
Sbjct: 308 GLVLDESGLWDPDFVTAAKYVMSPPIRSSGHDKALQAALSTGVLQLVGTDHCVFNSTQKS 367
Query: 378 FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAIL 437
GIDDFRKIPNGVNGIEERMHLVW+TMVESGQISV DYVR+TSTECARIFN+YP+KGAIL
Sbjct: 368 IGIDDFRKIPNGVNGIEERMHLVWNTMVESGQISVRDYVRITSTECARIFNIYPKKGAIL 427
Query: 438 VGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497
GSDADIII NPN+SFEI+++ HHSR DTNVYEG++ KGKVEVTI+GG++VWENDEL V+
Sbjct: 428 AGSDADIIILNPNASFEISSKHHHSRTDTNVYEGKKGKGKVEVTISGGKIVWENDELRVI 487
Query: 498 PGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKSST 538
PG+GKYIEM FNYLF G+ KADA+YLSS +APVKR SST
Sbjct: 488 PGAGKYIEMPAFNYLFDGIYKADAQYLSSTRAPVKRFHSST 528
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554724|ref|XP_003545693.1| PREDICTED: dihydropyrimidinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/506 (83%), Positives = 461/506 (91%), Gaps = 11/506 (2%)
Query: 33 NLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD 92
N FCDAG+ SSK+LIKGGTVVNAHHQQ+ADVYVEDGI+VA+ P I VGD+
Sbjct: 30 NQFCDAGT-----------SSKLLIKGGTVVNAHHQQVADVYVEDGIIVAINPTITVGDE 78
Query: 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS 152
V V+DATGKFVMPGGIDPHTHL EFM +ET+DDFFSGQAAALAGGTTMHIDFVIP GS
Sbjct: 79 VTVIDATGKFVMPGGIDPHTHLEFEFMDTETVDDFFSGQAAALAGGTTMHIDFVIPHKGS 138
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
LTAGFEAYEKKAK SCMDYGFHMAITKWDE VS EME+MVKEKGINSFKFFMAYKG+ MI
Sbjct: 139 LTAGFEAYEKKAKKSCMDYGFHMAITKWDETVSREMELMVKEKGINSFKFFMAYKGALMI 198
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
NDELL+EGFK+CKSLGALAMVHAENGDAV+EGQ++MIELGITGPEGHALSRP +LEGEAT
Sbjct: 199 NDELLLEGFKKCKSLGALAMVHAENGDAVYEGQEKMIELGITGPEGHALSRPAVLEGEAT 258
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
RAIRLA+FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIGEPV SGL LD+SWLWH DF
Sbjct: 259 ARAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVASGLALDESWLWHPDFE 318
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392
TAAKYVMSPPIR GH+KALQAAL+TG+LQLVGTDHCAFNSTQKA GIDDFRKIPNGVNG
Sbjct: 319 TAAKYVMSPPIRKRGHDKALQAALSTGVLQLVGTDHCAFNSTQKALGIDDFRKIPNGVNG 378
Query: 393 IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 452
IEERMHLVWD MVESGQISVTDYVRLTSTECARIFN+YPRKGAIL GSDADIII NPNS+
Sbjct: 379 IEERMHLVWDIMVESGQISVTDYVRLTSTECARIFNIYPRKGAILPGSDADIIILNPNST 438
Query: 453 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYL 512
FEITA+SHHS+LDTNVYEGR KGK+EVTIAGGRVVWEN+EL V PG+G+YI+M PF+YL
Sbjct: 439 FEITAKSHHSKLDTNVYEGRSGKGKIEVTIAGGRVVWENNELKVAPGTGRYIKMPPFSYL 498
Query: 513 FHGLDKADAKYLSSLQAPVKRLKSST 538
F+G+DK DA YL+SLQAPVKR KS+T
Sbjct: 499 FNGIDKKDAFYLNSLQAPVKRAKSNT 524
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493867|ref|XP_003617222.1| Dihydropyrimidinase [Medicago truncatula] gi|355518557|gb|AET00181.1| Dihydropyrimidinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/526 (80%), Positives = 477/526 (90%), Gaps = 6/526 (1%)
Query: 19 LLLLLYFPPISES-----NNLFCDAGSEYGGPQCGIQSSS-KILIKGGTVVNAHHQQIAD 72
LLL ++F I+ S NN FC+AG E G CG SS+ K+LIKGGTVVNAHHQ +AD
Sbjct: 9 LLLPIFFFLITTSLSQHANNQFCEAGIESGESTCGTSSSTNKLLIKGGTVVNAHHQHVAD 68
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
VYVEDGI+VAVQPNI VGDDV V+DATGKFVMPGGIDPH HL M+ +G+ ++DDFFSGQ+
Sbjct: 69 VYVEDGIIVAVQPNIMVGDDVYVIDATGKFVMPGGIDPHAHLGMDALGTTSVDDFFSGQS 128
Query: 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV 192
AALAGGTTMHIDFV+PING+LTAGFEAYEKKAKNSCMDYGFH+A+TKWDE VS +ME+MV
Sbjct: 129 AALAGGTTMHIDFVMPINGNLTAGFEAYEKKAKNSCMDYGFHVAVTKWDESVSTDMEIMV 188
Query: 193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252
KEKGINSFKFFMAYK M+NDELL++GFK+CKSLGALAMVHAENGDAV+ GQ++MIELG
Sbjct: 189 KEKGINSFKFFMAYKEFIMVNDELLLQGFKKCKSLGALAMVHAENGDAVYAGQQKMIELG 248
Query: 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIG 312
ITGPEGH LSRPP+LEGEAT+RAIRLA+FVNTPLYVVHVMS+DAMEEIAKARK+GQRVIG
Sbjct: 249 ITGPEGHPLSRPPMLEGEATSRAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIG 308
Query: 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372
EP+VSGL LDDSWLWH DF TAAKY+MSPPIR+ GH+KALQ+ALATG+LQLVGTDHCA+N
Sbjct: 309 EPIVSGLALDDSWLWHPDFTTAAKYLMSPPIRSKGHDKALQSALATGVLQLVGTDHCAWN 368
Query: 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 432
STQKA G+DDFR+I NGVNGIEERMH+VWD MVESGQISVTDYVR+TSTECARIFN+YPR
Sbjct: 369 STQKARGVDDFRQIINGVNGIEERMHVVWDIMVESGQISVTDYVRVTSTECARIFNIYPR 428
Query: 433 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEND 492
KGAIL GSDADIII NPNSSFEITA+SHHSRLDTNVYEG + KGK+EVTIAGGRVVWEN+
Sbjct: 429 KGAILPGSDADIIILNPNSSFEITAKSHHSRLDTNVYEGWKGKGKIEVTIAGGRVVWENN 488
Query: 493 ELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKSST 538
EL VVPG+G+YI+M PF+YLF GLDK DA YL+SL+APVKR KS+T
Sbjct: 489 ELKVVPGNGRYIQMPPFSYLFDGLDKKDAVYLNSLKAPVKRAKSTT 534
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358249144|ref|NP_001239744.1| uncharacterized protein LOC100781590 precursor [Glycine max] gi|255640000|gb|ACU20291.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/538 (78%), Positives = 472/538 (87%), Gaps = 12/538 (2%)
Query: 1 MIHSMASAFTHQLTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGG 60
M S+ S F H + L + ++ +S+S+ FCDAG+E SSK+LIKGG
Sbjct: 1 MQFSITSQFLHIFS---LTIFIIITSSLSQSSQ-FCDAGTEI--------PSSKLLIKGG 48
Query: 61 TVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
TVVNA H QIADVYVEDGI+VAV PNI VGDDV V+DATGK+VMPGGIDPHTHL M+
Sbjct: 49 TVVNAQHHQIADVYVEDGIIVAVNPNIMVGDDVTVIDATGKYVMPGGIDPHTHLDMDVGF 108
Query: 121 SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW 180
+ T+DDFFSGQAAALAGGTTMHIDFVIP+NGSLTAGFE YEKKAK SCMDYGFHM ITKW
Sbjct: 109 TATVDDFFSGQAAALAGGTTMHIDFVIPLNGSLTAGFEDYEKKAKKSCMDYGFHMVITKW 168
Query: 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240
DE VS EME+MVKEKGINSFKFFMAYKG MINDELL+EGFK+CKSLGA+AMVHAENGDA
Sbjct: 169 DETVSREMELMVKEKGINSFKFFMAYKGILMINDELLLEGFKKCKSLGAVAMVHAENGDA 228
Query: 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEI 300
V+EGQ++MIELGITGPEGHALSRP +LEGEAT RAIRLA+FVNTPLYVVHVMS+DAMEEI
Sbjct: 229 VYEGQRKMIELGITGPEGHALSRPAVLEGEATARAIRLADFVNTPLYVVHVMSIDAMEEI 288
Query: 301 AKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI 360
AKARKAGQRVIGEP+ SGL LD+SWLWH DF AAKYVMSPPIR GH+KALQAAL+TG+
Sbjct: 289 AKARKAGQRVIGEPIASGLALDESWLWHPDFEIAAKYVMSPPIRKRGHDKALQAALSTGV 348
Query: 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420
LQLVGTDHCAFNSTQKA GIDDFRK+PNGVNGIEERMHLVWD MVESGQISVTDYVR+TS
Sbjct: 349 LQLVGTDHCAFNSTQKARGIDDFRKMPNGVNGIEERMHLVWDIMVESGQISVTDYVRITS 408
Query: 421 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEV 480
TECA+IFN+YPRKGA+L GSDADIII NPNSSFE++A+SHHSRLDTNVYEGRR KGK+EV
Sbjct: 409 TECAKIFNIYPRKGAVLPGSDADIIILNPNSSFEMSAKSHHSRLDTNVYEGRRGKGKIEV 468
Query: 481 TIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPVKRLKSST 538
TIAGGRVVWEN+EL V PG+G+YI+M PF+YLF GLDK DA YL+SLQAPVKR K+ST
Sbjct: 469 TIAGGRVVWENNELKVTPGTGRYIQMPPFSYLFDGLDKKDAIYLNSLQAPVKRAKAST 526
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| TAIR|locus:2177048 | 531 | PYD2 "AT5G12200" [Arabidopsis | 0.947 | 0.960 | 0.794 | 2.4e-225 | |
| DICTYBASE|DDB_G0269246 | 503 | pyd2 "dihydropyrimidinase" [Di | 0.897 | 0.960 | 0.498 | 1e-123 | |
| TIGR_CMR|CPS_4055 | 480 | CPS_4055 "D-hydantoinase" [Col | 0.862 | 0.966 | 0.486 | 3.1e-122 | |
| MGI|MGI:1928679 | 519 | Dpys "dihydropyrimidinase" [Mu | 0.886 | 0.919 | 0.479 | 1.6e-118 | |
| UNIPROTKB|E2RSE5 | 518 | DPYS "Uncharacterized protein" | 0.869 | 0.903 | 0.488 | 3e-117 | |
| ZFIN|ZDB-GENE-070508-1 | 500 | dpys "dihydropyrimidinase" [Da | 0.853 | 0.918 | 0.489 | 2.1e-116 | |
| UNIPROTKB|E1BFN6 | 516 | DPYS "Uncharacterized protein" | 0.888 | 0.926 | 0.482 | 4.4e-116 | |
| RGD|68376 | 519 | Dpys "dihydropyrimidinase" [Ra | 0.886 | 0.919 | 0.469 | 2.4e-115 | |
| UNIPROTKB|Q14117 | 519 | DPYS "Dihydropyrimidinase" [Ho | 0.888 | 0.921 | 0.472 | 2.2e-114 | |
| UNIPROTKB|F1S1E7 | 521 | DPYS "Uncharacterized protein" | 0.888 | 0.917 | 0.476 | 3.5e-114 |
| TAIR|locus:2177048 PYD2 "AT5G12200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2175 (770.7 bits), Expect = 2.4e-225, P = 2.4e-225
Identities = 406/511 (79%), Positives = 453/511 (88%)
Query: 26 PPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP 85
P SES FC AG E G CG+ SS++ILIKGGTVVNAHHQ++ADVYVE+GI+VAVQP
Sbjct: 19 PSASESTTQFCSAGRENGVGSCGV-SSTRILIKGGTVVNAHHQELADVYVENGIIVAVQP 77
Query: 86 NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF 145
NI VGD+V VLDATGKFVMPGGIDPHTHLAMEFMG+ETIDDFFSGQAAALAGGTTMHIDF
Sbjct: 78 NIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGGTTMHIDF 137
Query: 146 VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMA 205
VIP+NG+L AGFEAYE K++ SCMDYGFHMAITKW GINSFKFF+A
Sbjct: 138 VIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGINSFKFFLA 197
Query: 206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP 265
YKGS M+ D+LL+EG KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP
Sbjct: 198 YKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPP 257
Query: 266 LLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325
+LEGEAT RAIRLA F+NTPLYVVHVMS+DAM+EIAKARK+GQ+VIGEPVVSGL+LDD W
Sbjct: 258 VLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSGLILDDHW 317
Query: 326 LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385
LW DF A+KYVMSPPIR GH KALQ AL+TGILQLVGTDHC FNSTQKA G+DDFR+
Sbjct: 318 LWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKALGLDDFRR 377
Query: 386 IPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 445
IPNGVNG+EERMHL+WDTMVESGQ+S TDYVR+TSTECARIFN+YPRKGAIL GSDADII
Sbjct: 378 IPNGVNGLEERMHLIWDTMVESGQLSATDYVRITSTECARIFNIYPRKGAILAGSDADII 437
Query: 446 IFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 505
I NPNSS+EI+++SHHSR DTNVYEGRR KGKVEVTIAGGR+VWEN+EL VVP SGKYIE
Sbjct: 438 ILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRIVWENEELKVVPRSGKYIE 497
Query: 506 MRPFNYLFHGLDKADAKYLSSLQAPVKRLKS 536
M PF+YLF G++K+DA YLSSL+APVKR+++
Sbjct: 498 MPPFSYLFDGIEKSDANYLSSLRAPVKRVRT 528
|
|
| DICTYBASE|DDB_G0269246 pyd2 "dihydropyrimidinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
Identities = 244/489 (49%), Positives = 322/489 (65%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ + ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGI
Sbjct: 4 VDQTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGI 63
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--K 165
D HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A K
Sbjct: 64 DTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEK 123
Query: 166 NSCMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
+C DY H+AIT W G+NSFK FMAYK SFM+ D+ + FKRCK
Sbjct: 124 VNC-DYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCK 182
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP
Sbjct: 183 ELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTP 242
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 243 VYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRP 302
Query: 346 SGHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
K L LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW+
Sbjct: 303 DPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENG 362
Query: 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 464
V +G+++ +VR TS+E ARIFN+YPRKG I VG D DI+I++PN S I+ +HH +
Sbjct: 363 VNTGKLTWCQFVRATSSEAARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAV 422
Query: 465 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYL 524
D N++EG +V G TI G +VW +++L+ V GSG+++ PF +F G+++ D K
Sbjct: 423 DFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD-KVR 481
Query: 525 SSLQAPVKR 533
+ L V R
Sbjct: 482 NELLRKVDR 490
|
|
| TIGR_CMR|CPS_4055 CPS_4055 "D-hydantoinase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
Identities = 226/465 (48%), Positives = 313/465 (67%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
I+I+GGTVV A ADVY ++G +VA+ N++V ++ + +DATG++++PGGIDPHTH+
Sbjct: 3 IIIRGGTVVTADMTFAADVYCDEGKIVAIGDNLDVPENAECIDATGQYIIPGGIDPHTHM 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF 173
+ FMG+ DDF++G AA LAGGTT IDFVIP G SL F ++ A S DY F
Sbjct: 63 QLPFMGTVASDDFYTGTAAGLAGGTTTIIDFVIPAPGQSLIEAFHQWQDWASKSAADYSF 122
Query: 174 HMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233
H+AIT W G+NSFK FMAYK + M +DE L++ F+R LGA+ V
Sbjct: 123 HVAITWWDDSVYEDMGTLVNEYGVNSFKHFMAYKNAIMADDETLVKSFRRSMDLGAIPTV 182
Query: 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
HAENG+ VF+ Q+ M+ GITGPEGH LSRPP +EGEA RAIR+AE +N P+YVVHV
Sbjct: 183 HAENGELVFQLQQEMLSQGITGPEGHPLSRPPAVEGEAANRAIRIAEVMNVPIYVVHVSC 242
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
+++E I +AR GQ V GE + L++DDS H + AA +VMSPP R+ H AL
Sbjct: 243 KESLEAITRARNEGQLVYGEVLAGHLLVDDSVYRHPNSEFAAAHVMSPPFRSKDHQAALW 302
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413
L +G LQ TDHC F + QKA G DDF KIPNG G+E+R+ ++WD V +G++++
Sbjct: 303 KGLQSGNLQTTATDHCCFCADQKAAGKDDFTKIPNGTAGVEDRLAVLWDAGVNTGRLTIN 362
Query: 414 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473
++V TST A+IFN+YPRKG++ VG+DAD+++++P + I+A++HH +D N++EGR
Sbjct: 363 EFVAATSTNAAKIFNLYPRKGSVSVGADADLVVWDPKGTRTISAKTHHQNIDFNIFEGRT 422
Query: 474 VKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDK 518
V G TI+ G++VW N LN V G+G+Y+E PFN +F L K
Sbjct: 423 VTGIPSHTISRGKLVWANGVLNAVRGAGQYVERPPFNPMFDALTK 467
|
|
| MGI|MGI:1928679 Dpys "dihydropyrimidinase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 234/488 (47%), Positives = 312/488 (63%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDD----VKVLDATGKFVMPGGID 109
++LI+GG +VN Q+ADV VEDG+V A+ ++ +D +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF+ G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYKG +M+ DE L F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + +A AR+AG V GEP+ +GL D W ++ AA +VM PP+R
Sbjct: 246 VVHVMSKSAAKVVADARRAGNVVYGEPIAAGLGTDGRQYWSEEWSHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L G+D+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 306 LTPGFLMDLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466
SG++ +V +TST A+IFN+YP+KG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRRISAKTHHQAVNF 425
Query: 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLS 525
N++EG G VTI+ GRVV+E NV G GK+I +PF Y++ + + D +
Sbjct: 426 NIFEGMVCHGVPLVTISRGRVVYEAGVFNVTAGHGKFIPRQPFAEYIYKRIKQRDQ---T 482
Query: 526 SLQAPVKR 533
PVKR
Sbjct: 483 CTPVPVKR 490
|
|
| UNIPROTKB|E2RSE5 DPYS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1155 (411.6 bits), Expect = 3.0e-117, P = 3.0e-117
Identities = 232/475 (48%), Positives = 305/475 (64%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGID 109
S++LI+GG VVNA Q ADV VEDG + A+ ++ ++VLDA+GK V+PGGID
Sbjct: 5 SRLLIRGGRVVNADLSQAADVLVEDGPMRALGRHLLPPGGAAGLRVLDASGKLVLPGGID 64
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS- 167
HTH+ FMGS ++DDF G AALAGGTTM IDF IP G SL FE + A
Sbjct: 65 THTHMQFPFMGSRSVDDFLQGTQAALAGGTTMIIDFAIPQKGGSLIQAFETWRSWADPKV 124
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYK +M+ DE L F +CK +
Sbjct: 125 CCDYSLHVAVTWWSDQVKEEMKILTQDKGVNSFKMFMAYKDLYMVRDEELYAAFSQCKEI 184
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A+VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 185 GAIALVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 244
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
VVHVMS A + IA AR+ G+ V GEP+ + L D + WH ++ AA +VM PP+R
Sbjct: 245 VVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWHKEWHHAAHHVMGPPLRPDP 304
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L GTDHC FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 305 STPDFLMNLLANGDLTTTGTDHCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 364
Query: 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466
SG++ +V +TST A++FN+YPRKG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 365 SGKMDENRFVAVTSTNAAKVFNLYPRKGRIAVGSDADIVIWDPKATRTISAKTHHQAVNF 424
Query: 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKAD 520
N++EG G VTI+ G+VV+E NV G GK+I +PF Y++ + + D
Sbjct: 425 NIFEGMVCHGVPVVTISRGKVVYEAGVFNVTAGDGKFIPRKPFAEYIYKRIKQRD 479
|
|
| ZFIN|ZDB-GENE-070508-1 dpys "dihydropyrimidinase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 226/462 (48%), Positives = 297/462 (64%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ S ILIKGG VVN +ADVY+EDG++ V ++ V +V+DAT K V+PGGID
Sbjct: 3 AQSCILIKGGKVVNEDFSVMADVYIEDGVISGVGTDLQVAAGTRVIDATHKLVLPGGIDS 62
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS-C 168
HTH+ + FMG+ T DDF +G AA+AGGTTM +DFVI G SL +E + + A C
Sbjct: 63 HTHMELSFMGTTTADDFQTGTQAAVAGGTTMILDFVIAQKGCSLLEAYERWRRTADPKVC 122
Query: 169 MDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY HMA+T W GINSFK FMAYK +M+ D L F CK +G
Sbjct: 123 CDYSLHMAVTWWDDTVKKEMETLVSEKGINSFKMFMAYKDLYMLQDLELYAVFSTCKEIG 182
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + EG KRM+ LGITGPEGH + RP +E EAT RAI +A N PLYV
Sbjct: 183 AIAQVHAENGDLIAEGAKRMLSLGITGPEGHEMCRPEEVEAEATQRAITIAHATNCPLYV 242
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VHVMS A + +A AR+ G+ V GEP+ +GL D + WH ++ AA +VM PP+R
Sbjct: 243 VHVMSKSAAKVVANARRNGRLVFGEPIAAGLGTDGTHYWHENWAHAAGFVMGPPLRPDPS 302
Query: 349 NKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
L LA L + GTD+C F+ QKA G DDF KIPNGVNG+E+RM ++W+ V S
Sbjct: 303 TPGYLMDLLANDDLSVTGTDNCTFSVCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHS 362
Query: 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467
G++ +V +TST A+IFN+YPRKG I GSDAD++I++P +S I+A++HH +D N
Sbjct: 363 GKMDENRFVAVTSTNAAKIFNLYPRKGRIAKGSDADLVIWDPKASRVISAKTHHQAVDYN 422
Query: 468 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 509
++EG G VTI+ G+VV+EN +L PG G+YI +PF
Sbjct: 423 IFEGMLCHGVPVVTISRGKVVYENGKLFTKPGEGRYIPRKPF 464
|
|
| UNIPROTKB|E1BFN6 DPYS "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
Identities = 236/489 (48%), Positives = 311/489 (63%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI-NVGD---DVKVLDATGKFVMPGGI 108
S +LI+GG VVN Q ADV VEDG+V AV ++ GD ++VLDA GK V+PGGI
Sbjct: 5 SLLLIRGGCVVNDDSSQEADVLVEDGVVQAVGRHVLPPGDAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS ++DDF G AALAGGTTM +DF IP G SL F+ + A
Sbjct: 65 DTHTHMQFPFMGSRSVDDFHLGTKAALAGGTTMIMDFAIPHKGHSLIEAFDTWRSWADPQ 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L E F RCK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILTQDKGVNSFKMFMAYKDVYMVRDVELYEAFSRCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD V EG K+M+ LGITGPEGH LSRP +E EAT RA+ +A VN PL
Sbjct: 185 IGAIAQVHAENGDLVAEGAKKMLALGITGPEGHELSRPEAVEAEATLRAVTIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
YVVHVMS A + +A AR+ G+ V GEP+ +GL D + W +++ AA +VM PP+R
Sbjct: 245 YVVHVMSKSAAKVVADARRDGKVVYGEPIAAGLGTDGTHHWDREWLHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
L LA L G+D+C FNS QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 305 PSTPDFLMNLLANDDLTTTGSDNCTFNSCQKALGKDDFTKIPNGVNGVEDRMSIIWEKGV 364
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
SG++ +V +TST A+IFN+YPRKG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 365 HSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKATRTISAKTHHQAVN 424
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYL 524
N++EG G VTI+ G+VV+E +V G GK+I +PF Y++ + + D
Sbjct: 425 FNIFEGMVCHGVPVVTISRGKVVYEAGVFSVSAGDGKFIPRKPFAEYIYKRIKQRDQ--- 481
Query: 525 SSLQAPVKR 533
+ + PVKR
Sbjct: 482 TCIPTPVKR 490
|
|
| RGD|68376 Dpys "dihydropyrimidinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
Identities = 229/488 (46%), Positives = 312/488 (63%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI-NVGDD---VKVLDATGKFVMPGGID 109
++LI+GG VVN Q+ADV VEDG+V A+ ++ GD +++LDA GK V+PGGID
Sbjct: 6 RLLIRGGRVVNDDFSQVADVLVEDGVVRALGRDLLPPGDTSRGLRILDAAGKLVLPGGID 65
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAKNS- 167
HTH+ FMGS+++DDF G AALAGGTTM IDF IP GS L FE + A
Sbjct: 66 THTHMQFPFMGSQSVDDFHQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKV 125
Query: 168 CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
C DY H+A+T W G+NSFK FMAYK +M+ D+ + F +CK +
Sbjct: 126 CCDYSLHVAVTWWSDKVKEEMKTLAQDKGVNSFKMFMAYKDLYMVQDQQMYAAFSQCKEI 185
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PLY
Sbjct: 186 GAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPLY 245
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
+VHVMS A + IA A++ G+ V GEP+ +GL D + W+ ++ AA +VM PP+R
Sbjct: 246 IVHVMSKSAAKVIADAKREGKVVYGEPIAAGLGTDGTQYWNKEWRHAAHHVMGPPLRPDP 305
Query: 348 HNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
L LA G L G+D+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 306 STPGFLMNLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVH 365
Query: 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466
SG++ +V +TST A+IFN+YP+KG I VGSDADI+I++P ++ I+A++HH ++
Sbjct: 366 SGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRTISAKTHHQAVNF 425
Query: 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYLS 525
N++EG G VTI+ GRVV+E +V G GK+I +PF +++ + + D +
Sbjct: 426 NIFEGMVCHGVPLVTISRGRVVYEAGVFDVTAGHGKFIPRQPFAEFIYKRVKQRDQ---T 482
Query: 526 SLQAPVKR 533
PVKR
Sbjct: 483 CTPIPVKR 490
|
|
| UNIPROTKB|Q14117 DPYS "Dihydropyrimidinase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1128 (402.1 bits), Expect = 2.2e-114, P = 2.2e-114
Identities = 231/489 (47%), Positives = 307/489 (62%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----NVGDDVKVLDATGKFVMPGGI 108
S++LI+GG VVN ++ADV VEDG+V A+ ++ ++VLDA GK V+PGGI
Sbjct: 5 SRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS +IDDF G AAL+GGTTM IDF IP G SL FE + A
Sbjct: 65 DTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPK 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L E F RCK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMAYKDLYMVTDLELYEAFSRCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PL
Sbjct: 185 IGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
Y+VHVMS A + IA AR+ G+ V GEP+ + L D + W+ ++ AA +VM PP+R
Sbjct: 245 YIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
L LA L GTD+C FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 305 PSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGV 364
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
SG++ +V +TST A+IFN+YPRKG I VGSDADI+I++P + I+A++HH ++
Sbjct: 365 HSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKGTRTISAKTHHQAVN 424
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAKYL 524
N++EG G VTI+ G+VV+E +V G GK+I +PF Y++ + + D
Sbjct: 425 FNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFAEYIYKRIKQRDR--- 481
Query: 525 SSLQAPVKR 533
+ PV+R
Sbjct: 482 TCTPTPVER 490
|
|
| UNIPROTKB|F1S1E7 DPYS "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
Identities = 234/491 (47%), Positives = 307/491 (62%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI----NVGDDVKVLDATGKFVMPGGI 108
S++LI+GG VVN Q+ADV VEDG+V A+ ++ ++VLDA GK V+PGGI
Sbjct: 5 SRLLIRGGRVVNDDSSQVADVLVEDGVVRALGRDLLPPGGAPAGLRVLDAAGKLVLPGGI 64
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS 167
D HTH+ FMGS ++DDF G AALAGGTTM IDF IP G SL FE + A +
Sbjct: 65 DTHTHMQFPFMGSRSVDDFHQGTKAALAGGTTMIIDFAIPHKGHSLVEAFETWRSWADSK 124
Query: 168 -CMDYGFHMAITKWXXXXXXXXXXXXXXXGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
C DY H+A+T W G+NSFK FMAYK +M+ D L F CK
Sbjct: 125 VCCDYSLHVAVTWWSDQVKEEMKILTQEKGVNSFKMFMAYKDLYMLRDVELYTVFSWCKE 184
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
+GA+A VHAENGD + EG K+M+ LGITGPEGH L RP +E EAT RAI +A VN PL
Sbjct: 185 IGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCPL 244
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
YVVHVMS A IA AR+ G+ V GEP+ +GL D + W+ D+ AA +VM PP+R
Sbjct: 245 YVVHVMSKSAARVIADARRDGKVVYGEPIAAGLGTDGTHYWNRDWHHAAHHVMGPPLRPD 304
Query: 347 GHNKA-LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
L LA L G+DHC FN+ QKA G DDF KIPNGVNG+E+RM ++W+ V
Sbjct: 305 PSTPDFLLNLLANDDLTTTGSDHCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKAV 364
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE--ITARSHHSR 463
SG++ +V +TST A+IFN+YPRKG I VGSDADI+I++P ++ I+A++HH
Sbjct: 365 HSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWDPKATRNRTISAKTHHQA 424
Query: 464 LDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKADAK 522
++ N++EG G VTI+ GRVV+E V G GK+I +PF +Y++ + + D
Sbjct: 425 VNFNIFEGMVCHGVPLVTISRGRVVYEAGVFTVTAGHGKFIPRKPFADYIYKRIKQRDE- 483
Query: 523 YLSSLQAPVKR 533
+ PV+R
Sbjct: 484 --TCAPTPVER 492
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q55DL0 | DPYS_DICDI | 3, ., 5, ., 2, ., 2 | 0.5173 | 0.8977 | 0.9602 | yes | no |
| B1XEG2 | PHYDA_ECODH | 3, ., 5, ., 2, ., - | 0.3492 | 0.8364 | 0.9761 | yes | no |
| B7N7B8 | PHYDA_ECOLU | 3, ., 5, ., 2, ., - | 0.3492 | 0.8364 | 0.9761 | yes | no |
| Q8VTT5 | HYDA_BURPI | 3, ., 5, ., 2, ., - | 0.3856 | 0.8382 | 0.9868 | yes | no |
| Q63150 | DPYS_RAT | 3, ., 5, ., 2, ., 2 | 0.4754 | 0.8866 | 0.9190 | yes | no |
| O69809 | HYDA_STRCO | 3, ., 5, ., 2, ., - | 0.4145 | 0.8513 | 0.9807 | yes | no |
| B7NW14 | PHYDA_ECO7I | 3, ., 5, ., 2, ., - | 0.3535 | 0.8364 | 0.9761 | yes | no |
| A7ZQY1 | PHYDA_ECO24 | 3, ., 5, ., 2, ., - | 0.3514 | 0.8364 | 0.9761 | yes | no |
| B1ITC8 | PHYDA_ECOLC | 3, ., 5, ., 2, ., - | 0.3514 | 0.8364 | 0.9761 | yes | no |
| Q31WE3 | PHYDA_SHIBS | 3, ., 5, ., 2, ., - | 0.3514 | 0.8364 | 0.9761 | yes | no |
| Q9I676 | HYDA_PSEAE | 3, ., 5, ., 2, ., 2 | 0.4924 | 0.8624 | 0.9686 | yes | no |
| Q14117 | DPYS_HUMAN | 3, ., 5, ., 2, ., 2 | 0.4807 | 0.8959 | 0.9287 | yes | no |
| B7LYD8 | PHYDA_ECO8A | 3, ., 5, ., 2, ., - | 0.3514 | 0.8364 | 0.9761 | yes | no |
| Q21773 | DHP1_CAEEL | 3, ., 5, ., 2, ., 2 | 0.4809 | 0.8605 | 0.9468 | yes | no |
| Q1R7F8 | PHYDA_ECOUT | 3, ., 5, ., 2, ., - | 0.3470 | 0.8364 | 0.9761 | yes | no |
| Q9EQF5 | DPYS_MOUSE | 3, ., 5, ., 2, ., 2 | 0.4877 | 0.8866 | 0.9190 | yes | no |
| A8A415 | PHYDA_ECOHS | 3, ., 5, ., 2, ., - | 0.3492 | 0.8364 | 0.9761 | yes | no |
| Q59699 | HYDA_PSEPU | 3, ., 5, ., 2, ., 2 | 0.5068 | 0.8085 | 0.8787 | yes | no |
| C5A0E6 | PHYDA_ECOBW | 3, ., 5, ., 2, ., - | 0.3492 | 0.8364 | 0.9761 | yes | no |
| B7LF59 | PHYDA_ECO55 | 3, ., 5, ., 2, ., - | 0.3514 | 0.8364 | 0.9761 | yes | no |
| B6I707 | PHYDA_ECOSE | 3, ., 5, ., 2, ., - | 0.3514 | 0.8364 | 0.9761 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.5.2 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 538 | |||
| PLN02942 | 486 | PLN02942, PLN02942, dihydropyrimidinase | 0.0 | |
| cd01314 | 447 | cd01314, D-HYD, D-hydantoinases (D-HYD) also calle | 0.0 | |
| TIGR02033 | 454 | TIGR02033, D-hydantoinase, D-hydantoinase | 0.0 | |
| PRK08323 | 459 | PRK08323, PRK08323, phenylhydantoinase; Validated | 0.0 | |
| PRK13404 | 477 | PRK13404, PRK13404, dihydropyrimidinase; Provision | 1e-121 | |
| COG0044 | 430 | COG0044, PyrC, Dihydroorotase and related cyclic a | 1e-111 | |
| cd01315 | 447 | cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and A | 3e-74 | |
| cd01302 | 337 | cd01302, Cyclic_amidohydrolases, Cyclic amidohydro | 3e-70 | |
| TIGR03178 | 443 | TIGR03178, allantoinase, allantoinase | 5e-62 | |
| PRK02382 | 443 | PRK02382, PRK02382, dihydroorotase; Provisional | 8e-54 | |
| PRK06189 | 451 | PRK06189, PRK06189, allantoinase; Provisional | 1e-53 | |
| cd01317 | 374 | cd01317, DHOase_IIa, Dihydroorotase (DHOase), subg | 9e-50 | |
| TIGR00857 | 411 | TIGR00857, pyrC_multi, dihydroorotase, multifuncti | 2e-48 | |
| cd01318 | 361 | cd01318, DHOase_IIb, Dihydroorotase (DHOase), subg | 5e-47 | |
| PRK08044 | 449 | PRK08044, PRK08044, allantoinase; Provisional | 2e-46 | |
| PRK09357 | 423 | PRK09357, pyrC, dihydroorotase; Validated | 3e-39 | |
| PRK07575 | 438 | PRK07575, PRK07575, dihydroorotase; Provisional | 3e-37 | |
| PRK09060 | 444 | PRK09060, PRK09060, dihydroorotase; Validated | 1e-33 | |
| PLN02795 | 505 | PLN02795, PLN02795, allantoinase | 2e-33 | |
| PRK09236 | 444 | PRK09236, PRK09236, dihydroorotase; Reviewed | 4e-31 | |
| PRK04250 | 398 | PRK04250, PRK04250, dihydroorotase; Provisional | 2e-28 | |
| PRK08417 | 386 | PRK08417, PRK08417, dihydroorotase; Provisional | 2e-26 | |
| PRK01211 | 409 | PRK01211, PRK01211, dihydroorotase; Provisional | 2e-16 | |
| pfam13594 | 66 | pfam13594, Amidohydro_5, Amidohydrolase | 4e-16 | |
| PRK07369 | 418 | PRK07369, PRK07369, dihydroorotase; Provisional | 4e-13 | |
| PRK09059 | 429 | PRK09059, PRK09059, dihydroorotase; Validated | 8e-13 | |
| COG0402 | 421 | COG0402, SsnA, Cytosine deaminase and related meta | 2e-12 | |
| PRK09237 | 380 | PRK09237, PRK09237, dihydroorotase; Provisional | 4e-12 | |
| TIGR03121 | 556 | TIGR03121, one_C_dehyd_A, formylmethanofuran dehyd | 2e-11 | |
| pfam13147 | 304 | pfam13147, Amidohydro_4, Amidohydrolase | 7e-11 | |
| PRK08204 | 449 | PRK08204, PRK08204, hypothetical protein; Provisio | 4e-10 | |
| cd01304 | 541 | cd01304, FMDH_A, Formylmethanofuran dehydrogenase | 6e-10 | |
| PRK07627 | 425 | PRK07627, PRK07627, dihydroorotase; Provisional | 1e-09 | |
| cd01309 | 359 | cd01309, Met_dep_hydrolase_C, Metallo-dependent hy | 3e-09 | |
| cd01298 | 411 | cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enz | 6e-09 | |
| PRK00369 | 392 | PRK00369, pyrC, dihydroorotase; Provisional | 8e-09 | |
| COG1229 | 575 | COG1229, FwdA, Formylmethanofuran dehydrogenase su | 9e-09 | |
| PRK10657 | 388 | PRK10657, PRK10657, isoaspartyl dipeptidase; Provi | 1e-08 | |
| PRK08393 | 424 | PRK08393, PRK08393, N-ethylammeline chlorohydrolas | 2e-08 | |
| PRK07228 | 445 | PRK07228, PRK07228, N-ethylammeline chlorohydrolas | 4e-08 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 4e-08 | |
| COG1228 | 406 | COG1228, HutI, Imidazolonepropionase and related a | 7e-08 | |
| pfam01979 | 307 | pfam01979, Amidohydro_1, Amidohydrolase family | 9e-08 | |
| cd01316 | 344 | cd01316, CAD_DHOase, The eukaryotic CAD protein is | 3e-07 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 4e-07 | |
| cd01296 | 371 | cd01296, Imidazolone-5PH, Imidazolonepropionase/im | 6e-07 | |
| PRK06038 | 430 | PRK06038, PRK06038, N-ethylammeline chlorohydrolas | 1e-06 | |
| COG1001 | 584 | COG1001, AdeC, Adenine deaminase [Nucleotide trans | 1e-06 | |
| PRK09356 | 406 | PRK09356, PRK09356, imidazolonepropionase; Validat | 1e-06 | |
| COG1574 | 535 | COG1574, COG1574, Predicted metal-dependent hydrol | 1e-06 | |
| cd01292 | 275 | cd01292, metallo-dependent_hydrolases, Superfamily | 2e-06 | |
| cd01293 | 398 | cd01293, Bact_CD, Bacterial cytosine deaminase and | 5e-06 | |
| PRK07627 | 425 | PRK07627, PRK07627, dihydroorotase; Provisional | 6e-06 | |
| cd01307 | 338 | cd01307, Met_dep_hydrolase_B, Metallo-dependent hy | 7e-06 | |
| TIGR00221 | 380 | TIGR00221, nagA, N-acetylglucosamine-6-phosphate d | 2e-05 | |
| cd01300 | 479 | cd01300, YtcJ_like, YtcJ_like metal dependent amid | 2e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 2e-05 | |
| PRK09061 | 509 | PRK09061, PRK09061, D-glutamate deacylase; Validat | 5e-05 | |
| PRK07369 | 418 | PRK07369, PRK07369, dihydroorotase; Provisional | 6e-05 | |
| cd00854 | 374 | cd00854, NagA, N-acetylglucosamine-6-phosphate dea | 9e-05 | |
| cd01299 | 342 | cd01299, Met_dep_hydrolase_A, Metallo-dependent hy | 9e-05 | |
| COG1820 | 380 | COG1820, NagA, N-acetylglucosamine-6-phosphate dea | 1e-04 | |
| PRK07203 | 442 | PRK07203, PRK07203, putative chlorohydrolase/amino | 1e-04 | |
| TIGR01178 | 552 | TIGR01178, ade, adenine deaminase | 1e-04 | |
| COG3964 | 386 | COG3964, COG3964, Predicted amidohydrolase [Genera | 3e-04 | |
| PRK15446 | 383 | PRK15446, PRK15446, phosphonate metabolism protein | 4e-04 | |
| cd01308 | 387 | cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipe | 4e-04 | |
| PRK08203 | 451 | PRK08203, PRK08203, hydroxydechloroatrazine ethyla | 0.001 | |
| PRK07572 | 426 | PRK07572, PRK07572, cytosine deaminase; Validated | 0.001 | |
| PRK05985 | 391 | PRK05985, PRK05985, cytosine deaminase; Provisiona | 0.002 | |
| PRK07583 | 438 | PRK07583, PRK07583, cytosine deaminase-like protei | 0.002 | |
| TIGR02967 | 401 | TIGR02967, guan_deamin, guanine deaminase | 0.002 | |
| PRK06380 | 418 | PRK06380, PRK06380, metal-dependent hydrolase; Pro | 0.002 | |
| pfam04909 | 272 | pfam04909, Amidohydro_2, Amidohydrolase | 0.002 | |
| TIGR01224 | 377 | TIGR01224, hutI, imidazolonepropionase | 0.003 | |
| PRK12394 | 379 | PRK12394, PRK12394, putative metallo-dependent hyd | 0.003 | |
| cd01297 | 415 | cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D | 0.004 | |
| cd01308 | 387 | cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipe | 0.004 | |
| COG3653 | 579 | COG3653, COG3653, N-acyl-D-aspartate/D-glutamate d | 0.004 |
| >gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase | Back alignment and domain information |
|---|
Score = 968 bits (2503), Expect = 0.0
Identities = 411/483 (85%), Positives = 449/483 (92%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
SS+KILIKGGTVVNAHHQ++ADVYVEDGI+VAV PN+ V DDV+V+DATGKFVMPGGIDP
Sbjct: 3 SSTKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDP 62
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170
HTHLAM FMG+ETIDDFFSGQAAALAGGTTMHIDFVIP+NG+L AG+EAYEKKA+ SCMD
Sbjct: 63 HTHLAMPFMGTETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMD 122
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
YGFHMAITKWD+ VS +ME +VKEKGINSFKFFMAYKGS M+ DELL+EGFKRCKSLGAL
Sbjct: 123 YGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTDELLLEGFKRCKSLGAL 182
Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT RAIRLA+FVNTPLYVVH
Sbjct: 183 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVH 242
Query: 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350
VMS+DAMEEIA+ARK+GQRVIGEPVVSGLVLDDS LW DF A+KYVMSPPIR +GH K
Sbjct: 243 VMSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGK 302
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
ALQAAL++GILQLVGTDHC FNSTQKAFG DDFRKIPNGVNGIEERMHLVWDTMVESGQI
Sbjct: 303 ALQAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQI 362
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
S TDYVR+TSTECA+IFN+YPRKGAIL GSDADIII NPNS+F I+A++HHSR+DTNVYE
Sbjct: 363 SPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTHHSRIDTNVYE 422
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAP 530
GRR KGKVEVTI+ GRVVWEN EL VV GSG+YIEM PF+YLF G+ KADA YLSSL+AP
Sbjct: 423 GRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEMPPFSYLFDGIQKADAAYLSSLRAP 482
Query: 531 VKR 533
VKR
Sbjct: 483 VKR 485
|
Length = 486 |
| >gnl|CDD|238639 cd01314, D-HYD, D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Score = 703 bits (1816), Expect = 0.0
Identities = 245/449 (54%), Positives = 308/449 (68%), Gaps = 4/449 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GT+V A AD+ +EDG +VA+ PN+ V+V+DATGK+V+PGGIDPHTHL
Sbjct: 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHL 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
+ FMG+ T DDF SG AA AGGTT IDF IP G SL E + KA S +DYG
Sbjct: 61 ELPFMGTVTADDFESGTRAAAAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYG 120
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHM IT W + V +E+ +VK KGI+SFK FMAYKG M++DE L++ KR K LGAL M
Sbjct: 121 FHMIITDWTDSVIEELPELVK-KGISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVM 179
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD + E QK+++ G TGPE HALSRPP +E EAT RAIRLAE PLY+VHV
Sbjct: 180 VHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
S +A +EIA+ARK G V GE L+LDDS W D+ AKYV SPP+R +AL
Sbjct: 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWK-DWFEGAKYVCSPPLRPKEDQEAL 298
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
L++G LQ VG+DHC FN QKA G DDF KIPNGV G+E RM L+W V G+I++
Sbjct: 299 WDGLSSGTLQTVGSDHCPFNFAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITL 358
Query: 413 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 472
+V LTST A+IF +YPRKG I VGSDAD++I++PN+ I+A +HH +D N++EG
Sbjct: 359 EKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAEKTISADTHHHNVDYNIFEGM 418
Query: 473 RVKGKVEVTIAGGRVVWENDELNVVPGSG 501
+VKG VTI+ G+VV E+ EL GSG
Sbjct: 419 KVKGWPVVTISRGKVVVEDGELVGEKGSG 447
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. Length = 447 |
| >gnl|CDD|233694 TIGR02033, D-hydantoinase, D-hydantoinase | Back alignment and domain information |
|---|
Score = 662 bits (1710), Expect = 0.0
Identities = 240/453 (52%), Positives = 302/453 (66%), Gaps = 4/453 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LI+GGTVVNA ADV +E G +VAV N+ D V+V+DATGK+V+PGGID HTHL
Sbjct: 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGSNLQPPDAVEVIDATGKYVLPGGIDVHTHL 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYG 172
M F G+ T DDFF+G AA AGGTT IDF +P G SLT E + +KA S +DYG
Sbjct: 61 EMPFGGTVTADDFFTGTKAAAAGGTTTIIDFALPSKGESLTEALETWHEKAEGKSVIDYG 120
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHM IT W++ V +E V E+GI SFK FMAYK M++DE L E KR K LGAL
Sbjct: 121 FHMMITDWNDHVLEEHIPEVVEEGITSFKVFMAYKNLLMVDDEELFEILKRAKELGALLQ 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD + E Q R++ G TGPE HALSRPP E EA RAI LA + PLYVVHV
Sbjct: 181 VHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALADAPLYVVHVS 240
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
+ DA++EIA+AR+ GQ V GE LVLDD+ F AKYV SPP+R AL
Sbjct: 241 TADAVDEIAEAREKGQPVYGETCPQYLVLDDTAYDKPGF-EGAKYVCSPPLREKEDQDAL 299
Query: 353 QAALATGILQLVGTDHCAFNSTQK-AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQIS 411
+AL++G LQ VG+DHC FN QK A G DDF KIPNG G+EERM L++D V G+I+
Sbjct: 300 WSALSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVAKGRIT 359
Query: 412 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEG 471
+ +V LTST A+IFN+YP+KG I VGSDADI+I++PN + I+A +HH D N +EG
Sbjct: 360 LEKFVELTSTNPAKIFNMYPQKGTIAVGSDADIVIWDPNRTTVISAETHHDNADYNPFEG 419
Query: 472 RRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 504
+V+G V ++ GRVV E+ + G+G+++
Sbjct: 420 FKVQGAVVSVLSRGRVVVEDGQFVGTAGAGRFV 452
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454 |
| >gnl|CDD|236240 PRK08323, PRK08323, phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Score = 625 bits (1615), Expect = 0.0
Identities = 231/463 (49%), Positives = 297/463 (64%), Gaps = 8/463 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
LIK GTVV A ADV +EDG + A+ N +V+DATGK+VMPGGIDPHTH
Sbjct: 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ M F G+ + DDF +G AA GGTT IDF + G SL EA+ KA + +DY
Sbjct: 58 MEMPFGGTVSSDDFETGTRAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDY 117
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFHM IT W+EVV DEM +V+E GI SFK FMAYKG+ M++D+ L+ +R LGAL
Sbjct: 118 GFHMIITDWNEVVLDEMPELVEE-GITSFKLFMAYKGALMLDDDELLRALQRAAELGALP 176
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA+ Q +++ G TGPE HALSRPP +EGEAT RAI LAE PLY+VHV
Sbjct: 177 MVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
+A+E I +AR GQRV GE L+LD+S D+ AKYVMSPP+R H A
Sbjct: 237 SCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDA 296
Query: 352 LQAALATGILQLVGTDHCAFNSTQKAF-GIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
L L G LQ+V TDHC F QK G DF KIPNG G+E+RM L++ V +G+I
Sbjct: 297 LWRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRI 356
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
++ +V LTST A+IF +YPRKG I VG+DADI+I++PN++ I+A + HS +D N YE
Sbjct: 357 TLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISASTLHSNVDYNPYE 416
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLF 513
G V G T++ G VV E+ E G G++++ +PF +
Sbjct: 417 GFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKRKPFQAVV 459
|
Length = 459 |
| >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Score = 363 bits (934), Expect = e-121
Identities = 169/458 (36%), Positives = 250/458 (54%), Gaps = 14/458 (3%)
Query: 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
I+GGTVV A AD+ + G + A+ + G + +DATG+ V+PGG+D H H+
Sbjct: 8 IRGGTVVTATDTFQADIGIRGGRIAALGEGLGPGA--REIDATGRLVLPGGVDSHCHIDQ 65
Query: 117 EF-MGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCM-DYGF 173
G DDF++G +A GGTT I F G SL E Y ++A + DY F
Sbjct: 66 PSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAF 125
Query: 174 HMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
H+ + EV+++E+ ++ + G SFK FM Y ++D +++ + GA+ M
Sbjct: 126 HLIVADPTEEVLTEELPALIAQ-GYTSFKVFMTYDD-LKLDDRQILDVLAVARRHGAMVM 183
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAEN D + KR++ G+T P+ HA+SRP L E EAT RAI LAE V+ P+ +VHV
Sbjct: 184 VHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVS 243
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
+A E+I +AR G ++ E L L L + AKY+ SPP R + +A+
Sbjct: 244 GREAAEQIRRARGRGLKIFAETCPQYLFLTAEDL-DRPGMEGAKYICSPPPRDKANQEAI 302
Query: 353 QAALATGILQLVGTDHCAFN---STQKAFGIDD--FRKIPNGVNGIEERMHLVWDTMVES 407
LA G ++ +DH F + K + F+ I NG+ GIE R+ L++ V
Sbjct: 303 WNGLADGTFEVFSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVK 362
Query: 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467
G+IS+ +V LTST A+++ +YPRKGAI +G+DADI I++P+ IT H D
Sbjct: 363 GRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNADLHHAADYT 422
Query: 468 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 505
YEG RV G ++ GRVV E+ EL GSG+++
Sbjct: 423 PYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLA 460
|
Length = 477 |
| >gnl|CDD|223122 COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 338 bits (868), Expect = e-111
Identities = 139/449 (30%), Positives = 224/449 (49%), Gaps = 25/449 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK VV+ ++AD+ ++DG + A+ N+ +++DA G V+PG +D H H
Sbjct: 3 LLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHF 62
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMD 170
E + F +G AA AGG T +D P EA E K S +D
Sbjct: 63 REPGF--EHKETFETGSRAAAAGGVTTVVDM--PNTKPPIDTAEALEDKLERAKGKSVVD 118
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230
Y F+ +TK + + E V FK FM + ++D++L E + LGAL
Sbjct: 119 YAFYGGLTKGNLGKLELTERGV----EAGFKGFMDD-STGALDDDVLEEALEYAAELGAL 173
Query: 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290
+VHAE+ D + EG G+ PE RPP+ E A R + LA +++ H
Sbjct: 174 ILVHAEDDDLIAEGVMN---EGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICH 230
Query: 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350
+ + +++E I A+ G RV E L+LD+ ++PP+R +
Sbjct: 231 ISTKESVELIRAAKAEGIRVTAEVTPHHLLLDE----EDIEDLGTLAKVNPPLRDEEDRE 286
Query: 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
AL AL G++ ++ +DH +K F + P+G+ G+E + L+ T+V+ G++
Sbjct: 287 ALWEALKDGVIDVIASDHAPHTLEEKR---LPFEEAPSGIPGLETALPLLL-TLVKKGRL 342
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
S+ V L ST ARIF + P KGAI G+DAD+++ +P+ + I A +S+ + +E
Sbjct: 343 SLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDEEWTIRAEELYSKAKNSPFE 401
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPG 499
G +KG+V TI G+VV+E+ E+ PG
Sbjct: 402 GFELKGRVVATILRGKVVYEDGEVIAKPG 430
|
Length = 430 |
| >gnl|CDD|238640 cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 3e-74
Identities = 140/464 (30%), Positives = 216/464 (46%), Gaps = 35/464 (7%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
+IK G VV + AD+ V+ G + A+ P+I + +V+DA G VMPG ID H H+
Sbjct: 3 VIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHIN 62
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNS 167
G + F +G AA AGG T ID +P+N +L A EA + K
Sbjct: 63 E--PGRTEWEGFETGTKAAAAGGITTIID--MPLNSIPPTTTVENLEAKLEAAQGKLH-- 116
Query: 168 CMDYGFHMAITKWDEVVS---DEMEVMVKEKGINSFKFFMAYKG--SF-MINDELLIEGF 221
+D GF W +V D++ + E G+ FK F+ G F ++DE L E
Sbjct: 117 -VDVGF------WGGLVPGNLDQLRPLD-EAGVVGFKCFLCPSGVDEFPAVDDEQLEEAM 168
Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
K G++ VHAEN + Q++ G + SRP E EA R + LA+
Sbjct: 169 KELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKE 228
Query: 282 VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV-MS 340
L++VH+ S +A+ I +AR G V E L D +
Sbjct: 229 TGCRLHIVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFT-----AEDVPDGGTEFKCA 283
Query: 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400
PPIR + + + L AL G + +V +DH K G DF K G++G++ + ++
Sbjct: 284 PPIRDAANQEQLWEALENGDIDMVVSDHSPCTPELKLLGKGDFFKAWGGISGLQLGLPVM 343
Query: 401 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSH 460
V +S+ D RL A++F + +KG I VG DAD ++++P F + A
Sbjct: 344 LTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVWDPEEEFTVDAEDL 403
Query: 461 HSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 504
+ + + Y GR +KG+V TI G VV+++ E+ P G+ +
Sbjct: 404 YYKNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEP-LGQLL 446
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. Length = 447 |
| >gnl|CDD|238627 cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 3e-70
Identities = 118/385 (30%), Positives = 172/385 (44%), Gaps = 52/385 (13%)
Query: 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI--PINGSLTAGFE 158
V+PG ID H HL + G+ +DF SG AA AGG T ID P L A
Sbjct: 1 LLVLPGFIDIHVHL-RDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIEL 59
Query: 159 AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI--NDEL 216
+ ++S +D+ FH I V+DE++ + + GINS K FM Y + +D
Sbjct: 60 KIKLAEESSYVDFSFHAGI--GPGDVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGT 116
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
L+ F S G MVHAE RA
Sbjct: 117 LMRTFLEIASRGGPVMVHAE-------------------------------------RAA 139
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336
+LAE +++ HV S +A+E I A+ G +V E L LD+S L + A
Sbjct: 140 QLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRLN----GAW 195
Query: 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396
++PP+R+ +AL + G + + +DH + +K G D K P G G+E R
Sbjct: 196 GKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETR 254
Query: 397 MHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT 456
+ ++ T +S+ V + S ARIF +YP KG I VG DAD++I +P +++T
Sbjct: 255 LPILL-TEGVKRGLSLETLVEILSENPARIFGLYP-KGTIAVGYDADLVIVDPKKEWKVT 312
Query: 457 ARSHHSRLDTNVYEGRRVKGKVEVT 481
A S+ D +EG V GK T
Sbjct: 313 AEEIESKADWTPFEGMEVTGKPVST 337
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. Length = 337 |
| >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase | Back alignment and domain information |
|---|
Score = 209 bits (535), Expect = 5e-62
Identities = 134/461 (29%), Positives = 222/461 (48%), Gaps = 29/461 (6%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+GG V+ + ++ ADV V+ G + A+ P +G K++DA G V PG +D H H+
Sbjct: 2 LIIRGGRVILPNGEREADVGVKGGKIAAIGP-DILGPAAKIIDAGGLVVFPGVVDTHVHI 60
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS-LTAGFEAYEKKAK----NSCM 169
G + F +G AA AGG T +ID +P+N T + E K + +
Sbjct: 61 NEP--GRTEWEGFETGTRAAAAGGITTYID--MPLNSIPATTTRASLEAKFEAAKGKLAV 116
Query: 170 DYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMAYKGS--FM-INDELLIEGFKRC 224
D GF W +V ++ + + E G+ FK F++ G F ++D L +G +
Sbjct: 117 DVGF------WGGLVPYNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMREL 170
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG L +VHAEN + G G + + SRP E EA R + LA+
Sbjct: 171 ARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGC 230
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344
++VVH+ S +A+E I +A++ G V E L L + D T AK +PPIR
Sbjct: 231 RVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEV--PDGGTLAK--CAPPIR 286
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
+ + L AL G++ V +DH K DF K G+ G++ + +++D
Sbjct: 287 DLANQEGLWEALLNGLIDCVVSDHSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEA 344
Query: 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 464
V+ + + D RL +T A+ F + +KG I G DAD + +P+ S+ +T + R
Sbjct: 345 VQKRGLPLEDIARLMATNPAKRFGL-AQKGRIAPGKDADFVFVDPDESYTLTPDDLYYRH 403
Query: 465 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 505
+ Y GR + G+V T G+ ++++++ P G+ +
Sbjct: 404 KVSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAP-KGQLLL 443
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 |
| >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 8e-54
Identities = 129/464 (27%), Positives = 216/464 (46%), Gaps = 42/464 (9%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
L+K G V + Q DV ++ G + AV +++ +V+DA G ++PGGID H H
Sbjct: 4 ALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVH- 62
Query: 115 AMEF--MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA----KNSC 168
F G + +++G +A AGG T +D P T E++++KA + S
Sbjct: 63 ---FREPGYTHKETWYTGSRSAAAGGVTTVVD--QPNTDPPTVDGESFDEKAELAARKSI 117
Query: 169 MDYGFHMAITK-WDEVVSDEMEVMVKEKGINSF-KFFMA-YKGSFMINDELLIEGFKRCK 225
+D+G + +T WD + S + E+G+ + + FMA G I++EL E
Sbjct: 118 VDFGINGGVTGNWDPLES------LWERGVFALGEIFMADSTGGMGIDEELFEEALAEAA 171
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LG LA VHAE+ D E K + G + + RP E A RA+ +A
Sbjct: 172 RLGVLATVHAEDEDLFDELAKLLK--GDADADAWSAYRPAAAEAAAVERALEVASETGAR 229
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL-DDSWLWHSDFVTAAKYVMSPPIR 344
+++ H+ + + ++ + + E L L W T K M+PP+R
Sbjct: 230 IHIAHISTPEGVDAARRE-----GITCEVTPHHLFLSRRDW---ERLGTFGK--MNPPLR 279
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
+ +AL L G + +V +DH +K D P+GV G+E + L+
Sbjct: 280 SEKRREALWERLNDGTIDVVASDHAPHTREEKD---ADIWDAPSGVPGVETMLPLLLAA- 335
Query: 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 464
V ++ + +T+ ARIF + KG I G DAD+++ +P+++ EI HS+
Sbjct: 336 VRKNRLPLERVRDVTAANPARIFGL-DGKGRIAEGYDADLVLVDPDAAREIRGDDLHSKA 394
Query: 465 DTNVYEGRRVKGKV-EVTIAGGRVVWENDELNVVPGSGKYIEMR 507
+EG +G E+T+ G VVW+ D++N G G+++ R
Sbjct: 395 GWTPFEGM--EGVFPELTMVRGTVVWDGDDINAKRGRGEFLRGR 436
|
Length = 443 |
| >gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 1e-53
Identities = 131/459 (28%), Positives = 216/459 (47%), Gaps = 38/459 (8%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+GG VV AD+ +++G + + P I+ +++DA G +V PG ID H H
Sbjct: 5 LIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEIS-SPAREIIDADGLYVFPGMIDVHVHF 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGS---LTAGFEAYEKKAK----NS 167
G + F +G AA AGG T + D +P+N +T EA + KA+ S
Sbjct: 64 NEP--GRTHWEGFATGSAALAAGGCTTYFD--MPLNSIPPTVTR--EALDAKAELARQKS 117
Query: 168 CMDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFMAYKGS--FMINDEL-LIEGFK 222
+D+ W +V +E + + E G+ FK FM+ G+ F +D+L L EG K
Sbjct: 118 AVDFAL------WGGLVPGNLEHLRELAEAGVIGFKAFMSNSGTDEFRSSDDLTLYEGMK 171
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
+LG + +HAE+ + + G T + SRP + E EA RA+ A+
Sbjct: 172 EIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQET 231
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV---TAAKYVM 339
PL+ VH+ S A+ IA+A+K G V E L+ DF AK
Sbjct: 232 GCPLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFT-----EEDFERIGAVAK--C 284
Query: 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
+PP+R+ + L L G + ++ +DH K DDF + G++G + + +
Sbjct: 285 APPLRSRSQKEELWRGLLAGEIDMISSDHSPCPPELKEG--DDFFLVWGGISGGQSTLLV 342
Query: 400 VWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARS 459
+ I + RL +T A+ F + P+KG + VG+DAD ++ + + ++ +T
Sbjct: 343 MLTEGYIERGIPLETIARLLATNPAKRFGL-PQKGRLEVGADADFVLVDLDETYTLTKED 401
Query: 460 HHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498
R + YEGR G+V T G+ V+++ E+ P
Sbjct: 402 LFYRHKQSPYEGRTFPGRVVATYLRGQCVYQDGEVFPPP 440
|
Length = 451 |
| >gnl|CDD|238642 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 9e-50
Identities = 107/397 (26%), Positives = 178/397 (44%), Gaps = 30/397 (7%)
Query: 92 DVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTT----M-HIDFV 146
D +V+DA GK + PG +D H HL G E + SG AA AGG T M + + V
Sbjct: 1 DAEVIDAEGKILAPGLVDLHVHL--REPGFEYKETLESGAKAAAAGGFTTVVCMPNTNPV 58
Query: 147 IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV--KEKGINSFKFFM 204
I + + + G A+TK + E+ + E G F
Sbjct: 59 IDNPAVVELLKNRAKDVGIVRVLPIG---ALTKGLKGE--ELTEIGELLEAGAVGF---- 109
Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264
+ G + + ELL + L +VH E+ G M E + G P
Sbjct: 110 SDDGKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGGGV--MNEGKVASRLGLP-GIP 166
Query: 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324
P E R + LAE ++ H+ + ++E I KA+ G V E L+LDD
Sbjct: 167 PEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDE 226
Query: 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFR 384
L + T AK ++PP+R+ +AL AL G + + +DH +K +
Sbjct: 227 AL--ESYDTNAK--VNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDLPFAE-- 280
Query: 385 KIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADI 444
P G+ G+E + L+W +V+ G +++ D +R ST A+I + P G + VG+ AD+
Sbjct: 281 -APPGIIGLETALPLLWTLLVKGGLLTLPDLIRALSTNPAKILGLPP--GRLEVGAPADL 337
Query: 445 IIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 481
++F+P++ + + + S+ ++G+++KG+V T
Sbjct: 338 VLFDPDAEWIVDEETFRSKSKNTPFDGQKLKGRVLAT 374
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. Length = 374 |
| >gnl|CDD|233153 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Score = 173 bits (439), Expect = 2e-48
Identities = 115/423 (27%), Positives = 190/423 (44%), Gaps = 19/423 (4%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
D+ VE G + + D +V+DA G V+PG ID H HL + G E +D SG
Sbjct: 6 VDILVEGGRIKKIGKLRIPPDA-EVIDAKGLLVLPGFIDLHVHLR-DP-GEEYKEDIESG 62
Query: 131 QAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEM 188
AA GG T D P + ++ K S +D + +T+ ++
Sbjct: 63 SKAAAHGGFTTVADMPNTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTE 122
Query: 189 EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248
+KE G F GS + + + + G +HAE+ D ++ G
Sbjct: 123 AYELKEAGAVGRMFTD--DGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMH- 179
Query: 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ 308
G + + +RPP E A R + LA+ P+++ H+ + +++E I KA+ G
Sbjct: 180 --EGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGI 237
Query: 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368
++ E L+L + + D ++PP+R AL L GI+ ++ TDH
Sbjct: 238 KITAEVTPHHLLLSEEDVARLD----GNGKVNPPLREKEDRLALIEGLKDGIIDIIATDH 293
Query: 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428
+K P G+ G+E + L+ +V+ G IS+ D +R+ S ARIF
Sbjct: 294 APHTLEEKTKEFAA---APPGIPGLETALPLLLQLLVK-GLISLKDLIRMLSINPARIFG 349
Query: 429 VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 488
+ P KG + G+ ADI +F+ + I A + +S+ +EG +KGK TI G+VV
Sbjct: 350 L-PDKGTLEEGNPADITVFDLKKEWTINAETFYSKAKNTPFEGMSLKGKPIATILRGKVV 408
Query: 489 WEN 491
+E+
Sbjct: 409 YED 411
|
In contrast to the homodimeric type of dihydroorotase found in E. coli, this class tends to appear in a large, multifunctional complex with aspartate transcarbamoylase. Homologous domains appear in multifunctional proteins of higher eukaryotes. In some species, including Pseudomonas putida and P. aeruginosa, this protein is inactive but is required as a non-catalytic subunit of aspartate transcarbamoylase (ATCase). In these species, a second, active dihydroorotase is also present. The seed for this model does not include any example of the dihydroorotase domain of eukaryotic multidomain pyrimidine synthesis proteins. All proteins described by This model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 411 |
| >gnl|CDD|238643 cd01318, DHOase_IIb, Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 5e-47
Identities = 116/392 (29%), Positives = 171/392 (43%), Gaps = 37/392 (9%)
Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
G ++PG ID H H E G +DF SG AA AGG T +D +P T EA
Sbjct: 1 GLLILPGVIDIHVHF-REP-GLTYKEDFVSGSRAAAAGGVTTVMD--MPNTKPPTTTAEA 56
Query: 160 YEKK----AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GSFMIND 214
+K A S +DYG + +T E + + + +K FM G + ++
Sbjct: 57 LYEKLRLAAAKSVVDYGLYFGVTG-SEDLE-----ELDKAPPAGYKIFMGDSTGDLLDDE 110
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
E L F L HAE+ D + E +K + H R AT R
Sbjct: 111 ETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGESA-----HPRIRDAEAAAVATAR 162
Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334
A++LA L++ HV + + ++ I KA+ V E L LD D+
Sbjct: 163 ALKLARRHGARLHICHVSTPEELKLIKKAKP---GVTVEVTPHHLFLDVE-----DYDRL 214
Query: 335 AKYV-MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393
++PP+R+ KAL ALA G + ++ +DH +K G P+G+ G+
Sbjct: 215 GTLGKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRKGY---PAAPSGIPGV 271
Query: 394 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 453
E + L+ T+V G +S++ VRLTS ARIF + KG I G DAD+ + +
Sbjct: 272 ETALPLML-TLVNKGILSLSRVVRLTSHNPARIFGI-KNKGRIAEGYDADLTVVDLKEER 329
Query: 454 EITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 485
I A HS+ +EG V G +TI G
Sbjct: 330 TIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361
|
This group contains the archeal members of the DHOase family. Length = 361 |
| >gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 2e-46
Identities = 133/473 (28%), Positives = 218/473 (46%), Gaps = 46/473 (9%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
S ++IK GTV+ + ++ D+ V+ G + A+ ++ GD +V+DA+G V PG +D H
Sbjct: 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDL--GDAKEVMDASGLVVSPGMVDAH 59
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN--------GSLTAGFEAYEKK 163
TH++ G + + +G AA GG T I+ +P+N S+ F+A + K
Sbjct: 60 THISEP--GRSHWEGYETGTRAAAKGGITTMIE--MPLNQLPATVDRASIELKFDAAKGK 115
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVM--VKEKGINSFKFFMA------YKGSFM-IND 214
G +VS ++ + + E G+ FK F+A F +ND
Sbjct: 116 LTIDAAQLG---------GLVSYNLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVND 166
Query: 215 ELLIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
+G ++ LG +VH EN D + E KR G + SRP E EA
Sbjct: 167 WQFYKGAQKLGELGQPVLVHCENALICDELGEEAKRE---GRVTAHDYVASRPVFTEVEA 223
Query: 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331
R + LA+ L+V H+ S + +EE+ +AR+ GQ V E VLD
Sbjct: 224 IRRVLYLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE--I 281
Query: 332 VTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVN 391
T AK SPPIR + K + L G + + +DH KA + + G+
Sbjct: 282 GTLAK--CSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMEAWGGIA 336
Query: 392 GIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 451
G++ M +++D V+ +S+ + +L +T A IF + +KG I G DAD + PNS
Sbjct: 337 GLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGKDADFVFIQPNS 395
Query: 452 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 504
S+ + R + Y GR + ++ TI G V+++ ++ V G++I
Sbjct: 396 SYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFI 448
|
Length = 449 |
| >gnl|CDD|236479 PRK09357, pyrC, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 3e-39
Identities = 119/471 (25%), Positives = 198/471 (42%), Gaps = 80/471 (16%)
Query: 53 SKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
ILIK G V++ ++ADV ++DG + A+ NI + +V+DATG V PG +D H
Sbjct: 1 MMILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLH 59
Query: 112 THLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------ID------------------ 144
HL G E + +G AA AGG TT+ ID
Sbjct: 60 VHLREP--GQEDKETIETGSRAAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLV 117
Query: 145 FVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM 204
V+P+ G++T G G + E + KE G+ +F
Sbjct: 118 DVLPV-GAITKGLA-------------GEELT----------EFGAL-KEAGVVAF---- 148
Query: 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGHA 260
+ G + + L+ + K+L L H E V + LG+ G
Sbjct: 149 SDDGIPVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGGVMNEGEVSARLGLPG----- 203
Query: 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320
P + E R + LAE +++ HV + ++E I A+ G +V E L+
Sbjct: 204 --IPAVAEEVMIARDVLLAEATGARVHICHVSTAGSVELIRWAKALGIKVTAEVTPHHLL 261
Query: 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGI 380
L D L D Y ++PP+R +AL L G + + TDH +K
Sbjct: 262 LTDEDLLTYD----PNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHAPHAREEKE--- 314
Query: 381 DDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 440
+F P G+ G+E + L++ T+V++G + + + + ARI + + G
Sbjct: 315 CEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLPAGP--LAEGE 372
Query: 441 DADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
AD++IF+P + + + S+ + G ++KGKV TI G++V+++
Sbjct: 373 PADLVIFDPEAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423
|
Length = 423 |
| >gnl|CDD|236055 PRK07575, PRK07575, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-37
Identities = 117/456 (25%), Positives = 206/456 (45%), Gaps = 41/456 (8%)
Query: 51 SSSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+LI+ ++ + + DV VEDG +VA+ P I+ V+DA G ++PG ID
Sbjct: 1 MMMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVID 60
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AK 165
P H G E +D F+ A GG T ++ +P LT A + K A+
Sbjct: 61 PQVHFREP--GLEHKEDLFTASRACAKGGVTSFLE--MPNTKPLTTTQAALDDKLARAAE 116
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIEG-FKR 223
++YGF + T D + ++ K FM + G ++++E +E F
Sbjct: 117 KCVVNYGFFIGAT------PDNLPELLTANPTCGIKIFMGSSHGPLLVDEEAALERIFAE 170
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L A VHAE+ + + GI+ P H+ + AT A++L++
Sbjct: 171 GTRLIA---VHAEDQARIRARRAEFA--GISDPADHSQIQDEEAALLATRLALKLSKKYQ 225
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD----FVTAAKYVM 339
L+++H+ + E + + + V+ V L ++D T A+ M
Sbjct: 226 RRLHILHLSTAIEAELLRQDKP--------SWVTAEVTPQHLLLNTDAYERIGTLAQ--M 275
Query: 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
+PP+R+ N+AL AL G++ + TDH +KA + P+G+ G+E + L
Sbjct: 276 NPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLEEKA---QPYPNSPSGMPGVETSLPL 332
Query: 400 VWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARS 459
+ + G+ +V VR ST AR + + P KG I G DAD+++ + N+ +
Sbjct: 333 MLTAAMR-GKCTVAQVVRWMSTAVARAYGI-PNKGRIAPGYDADLVLVDLNTYRPVRREE 390
Query: 460 HHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495
++ + +EG + G TI GG++V++ ++N
Sbjct: 391 LLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVN 426
|
Length = 438 |
| >gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-33
Identities = 132/462 (28%), Positives = 208/462 (45%), Gaps = 50/462 (10%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
++KGGTVVN + AD+ + DG + A+ +V+D G V+PG ID H
Sbjct: 8 ILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSGASAG-EVIDCRGLHVLPGVIDSQVHFR 66
Query: 116 MEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK---AKNS--CMD 170
G E +D +G AA+ GG T F +P LT EA K A++ C D
Sbjct: 67 EP--GLEHKEDLETGSRAAVLGGVTAV--FEMPNTNPLTTTAEALADKLARARHRMHC-D 121
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFM-AYKGSFMINDELLIE-----GFKRC 224
+ F++ T+ D DE+ + + G K FM + G ++ D+ + G +R
Sbjct: 122 FAFYVGGTR-DNA--DELAELERLPGCAGIKVFMGSSTGDLLVEDDEGLRRILRNGRRR- 177
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIE---LGITG-PEGHALSRPPLLEGEATTRAIRLAE 280
A H+E+ + R+ E L + G P H + R AT R +RLA
Sbjct: 178 ------AAFHSED-------EYRLRERKGLRVEGDPSSHPVWRDEEAALLATRRLVRLAR 224
Query: 281 FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340
++V+HV + + ++ +A + E L L + T A M+
Sbjct: 225 ETGRRIHVLHVSTAEEIDFLADHK---DVATVEVTPHHLTLAAPECYER-LGTLA--QMN 278
Query: 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400
PPIR + H L + G++ ++G+DH +KA + P+G+ G++ + ++
Sbjct: 279 PPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKA---KPYPASPSGMTGVQTLVPIM 335
Query: 401 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSH 460
D V +G++S+ +V LTS ARIF + KG I VG DAD I + IT
Sbjct: 336 LD-HVNAGRLSLERFVDLTSAGPARIFGI-AGKGRIAVGYDADFTIVDLKRRETITNEWI 393
Query: 461 HSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGK 502
SR Y+G+ V G TI G+ V + EL V P +G+
Sbjct: 394 ASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGEL-VGPPTGE 434
|
Length = 444 |
| >gnl|CDD|178392 PLN02795, PLN02795, allantoinase | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-33
Identities = 116/483 (24%), Positives = 186/483 (38%), Gaps = 71/483 (14%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGI 108
S +++ G + A V VE G +V+V VLD VMPG I
Sbjct: 50 SKRVVTPAGVIPGA-------VEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLI 102
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT----AGFEAYEKKA 164
D H HL G + F +G AA AGG T +D +P+N + E + A
Sbjct: 103 DVHVHL--NEPGRTEWEGFPTGTKAAAAGGITTLVD--MPLNSFPSTTSVETLELKIEAA 158
Query: 165 KNSCM-DYGFHMAITKWDEVVSD------EMEVMVKEKGINSFKFFMAYKGSFMIND--- 214
K D GF W +V + +E ++ + G K FM G IND
Sbjct: 159 KGKLYVDVGF------WGGLVPENAHNASVLEELL-DAGALGLKSFMCPSG---INDFPM 208
Query: 215 ---ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271
+ G +VHAE V ++ + SRPP E EA
Sbjct: 209 TTATHIKAALPVLAKYGRPLLVHAEVVSPV--ESDSRLDADPRSYSTYLKSRPPSWEQEA 266
Query: 272 ---------TTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVL 321
TR +AE +++VH+ + ++E I +A+ G V E L
Sbjct: 267 IRQLLEVAKDTRPGGVAE--GAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAF 324
Query: 322 DDSWLWHSDFVT--AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG 379
++ + +Y +PPIR + + + L AL G + ++ +DH K
Sbjct: 325 S------AEEIPDGDTRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLE 378
Query: 380 IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 439
+F + G++ ++ + W G +++ R S A++ + KGAI G
Sbjct: 379 EGNFLRAWGGISSLQFVLPATWTAGRAYG-LTLEQLARWWSERPAKLAGL-DSKGAIAPG 436
Query: 440 SDADIIIFNPNSSFEITARS----HHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495
DADI++++P + F + H L Y G ++ GKV T G +V+ +
Sbjct: 437 KDADIVVWDPEAEFVLDESYPIYHKHKSLSP--YLGTKLSGKVIATFVRGNLVFLEGKHA 494
Query: 496 VVP 498
Sbjct: 495 KQA 497
|
Length = 505 |
| >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 4e-31
Identities = 116/465 (24%), Positives = 204/465 (43%), Gaps = 56/465 (12%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+ILIK +VN DV +E+G + + +I+ V+DA G++++PG ID
Sbjct: 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQV 61
Query: 113 HLAMEFM--GSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKNSC 168
H F G D S AA+AGG T ++ P +L A Y+ A+ S
Sbjct: 62 H----FREPGLTHKGDIASESRAAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSL 117
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVK--EKGINSFKFFM-AYKGSFMINDELLIEG-FKRC 224
+Y F+ T +D ++ + + K + K FM A G+ ++++ +E F+
Sbjct: 118 ANYSFYFGAT------NDNLDEIKRLDPKRVCGVKVFMGASTGNMLVDNPETLERIFRDA 171
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIEL---GITGPEGHALSRPPLLEGEA----TTRAIR 277
+L A H E+ + + E I E H L R EA ++ A+
Sbjct: 172 PTLIA---THCEDTPTIKANLAKYKEKYGDDIP-AEMHPLIR----SAEACYKSSSLAVS 223
Query: 278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337
LA+ T L+V+H+ + + A +R+ E V L DD SD+
Sbjct: 224 LAKKHGTRLHVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDD-----SDYARLGNL 278
Query: 338 VM-SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396
+ +P I+ + +AL+ ALA + ++ TDH +K + + P+G
Sbjct: 279 IKCNPAIKTASDREALRQALADDRIDVIATDHAPHTWEEKQ---GPYFQAPSG------- 328
Query: 397 MHLVWDT------MVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450
+ LV +V G++S+ V TS A +F++ +G I G AD+++ + N
Sbjct: 329 LPLVQHALPALLELVHEGKLSLEKVVEKTSHAPAILFDI-KERGFIREGYWADLVLVDLN 387
Query: 451 SSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495
S + +T + + + +EGR + +V T G++V+ N +L
Sbjct: 388 SPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQLVYHNGQLV 432
|
Length = 444 |
| >gnl|CDD|235265 PRK04250, PRK04250, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 119/453 (26%), Positives = 183/453 (40%), Gaps = 80/453 (17%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K L+KG V + +E+G + + G +V+ G ++PG ID H H
Sbjct: 5 KFLLKGRIVE-------GGIGIENGRISKISLRDLKGK--EVIKVKGGIILPGLIDVHVH 55
Query: 114 LAMEFMGS--ETIDDFFSGQAAALAGGTTMHIDFV---IPINGSLTAGFEAYEKKAKNSC 168
L +F S ETI+ SG AAL GG T+ D PI T +E + A+
Sbjct: 56 L-RDFEESYKETIE---SGTKAALHGGITLVFDMPNTKPPIMDEKT--YEKRMRIAEKKS 109
Query: 169 -MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL 227
DY + I E + K F A G + + +
Sbjct: 110 YADYALNFLIAGNCEKAEEIKADFYKI-------FMGASTGGIFSEN--FEVDYA--CAP 158
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G ++ VHAE+ + + E PE RPP E A RA+ + + PL+
Sbjct: 159 GIVS-VHAEDPELIREF-----------PE-----RPPEAEVVAIERALEAGKKLKKPLH 201
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS------P 341
+ H+ + D ++ I K+ P VS V H F+T Y + P
Sbjct: 202 ICHISTKDGLKLILKS--------NLPWVSFEVTP-----HHLFLTRKDYERNPLLKVYP 248
Query: 342 PIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401
P+R+ KAL + + ++ +DH K G G+ G+E + L+
Sbjct: 249 PLRSEEDRKALWENFSK--IPIIASDHAPHTLEDKEAG-------AAGIPGLETEVPLLL 299
Query: 402 DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH 461
D G IS+ D V ARIF + G I G+ A+ +F+ + I A +
Sbjct: 300 D-AANKGMISLFDIVEKMHDNPARIFGI-KNYG-IEEGNYANFAVFDMKKEWTIKAEELY 356
Query: 462 SRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 494
++ YEG ++KGKV +TI G VV E+DE+
Sbjct: 357 TKAGWTPYEGFKLKGKVIMTILRGEVVMEDDEI 389
|
Length = 398 |
| >gnl|CDD|236262 PRK08417, PRK08417, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 97/432 (22%), Positives = 174/432 (40%), Gaps = 64/432 (14%)
Query: 75 VEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ--- 131
++DG + + ++ ++LDA GK ++P +D + +D S +
Sbjct: 3 IKDGKITEIGSDLK---GEEILDAKGKTLLPALVD---------LNVSLKNDSLSSKNLK 50
Query: 132 ---AAALAGGTT---MHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVS 185
L GG ++ D I+ + E + M + D +S
Sbjct: 51 SLENECLKGGVGSIVLYPDSTPAIDNEIA--LELINSAQRELPMQIFPSIRALDEDGKLS 108
Query: 186 DEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVF 242
+ I + K + ++ LL + K L E D+ F
Sbjct: 109 N----------IATL-LKKGAKALELSSDLDANLLKVIAQYAKMLDVPIFCRCE--DSSF 155
Query: 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAK 302
+ M + G E P + E + + LA+F + + ++E + K
Sbjct: 156 DDSGVMND-GELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDK 214
Query: 303 ARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ 362
+ G++++ E + L+LDDS +F TAAK ++PP+R+ AL AL G +
Sbjct: 215 FKSEGEKLLKEVSIHHLILDDSAC--ENFNTAAK--LNPPLRSKEDRLALLEALKEGKID 270
Query: 363 LVGTDHCAFNSTQK--AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420
+ + H A ++++K AF F G++ I E L + +V+ G I+ ++ R TS
Sbjct: 271 FLTSLHSAKSNSKKDLAFDEAAF-----GIDSICEYFSLCYTYLVKEGIITWSELSRFTS 325
Query: 421 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNV--YEGRRVKGKV 478
A+ + G I VG +AD+++F+PN S I D N Y G + GK+
Sbjct: 326 YNPAQFLGL--NSGEIEVGKEADLVLFDPNESTII---------DDNFSLYSGDELYGKI 374
Query: 479 EVTIAGGRVVWE 490
E I G++ E
Sbjct: 375 EAVIIKGKLYLE 386
|
Length = 386 |
| >gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 93/439 (21%), Positives = 176/439 (40%), Gaps = 58/439 (13%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131
++ VEDG + +++ + ++ A ++P D H H G +DF +G
Sbjct: 17 EIEVEDGKIKSIKKDAGNIGKKELKGA----ILPAATDIHVHFRTP--GETEKEDFSTGT 70
Query: 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYGFHMAITKWDEVVSDE 187
+A+ GGTT +D +P N + A+ K A + +D+ + T + ++ DE
Sbjct: 71 LSAIFGGTTFIMD--MPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNALILDE 128
Query: 188 MEVMVKEKGINSFKFFMAYKGSFMINDELLIEG-FKRCKSLGALAMVHAENGDAVFEGQK 246
+ K +M G+ N + G K+ HAE + + + Q
Sbjct: 129 RSI--------GLKVYMG--GTTNTNGTDIEGGEIKKINEANIPVFFHAELSECLRKHQF 178
Query: 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV-HVMSMDAMEEIAKARK 305
L H L+RP E +A++ + ++ ++ HV S+D + +
Sbjct: 179 ESKNL-----RDHDLARPI----ECEIKAVKYVKNLDLKTKIIAHVSSIDVIGRFLR--- 226
Query: 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365
E L+L+D + K ++PP+R + L +G ++
Sbjct: 227 -------EVTPHHLLLNDDM----PLGSYGK--VNPPLRDRWTQERLLEEYISGRFDILS 273
Query: 366 TDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECAR 425
+DH K +F +G+ G+E R+ L +V+ + + + A
Sbjct: 274 SDHAPHTEEDKQ----EFEYAKSGIIGVETRVPLFL-ALVKKKILPLDVLYKTAIERPAS 328
Query: 426 IFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 485
+F + +KG I G DAD + F+ + +I + HS+ + + G V I G
Sbjct: 329 LFGI--KKGKIEEGYDADFMAFDFTNIKKINDKRLHSKCPVSPFNGFDAIFPSHV-IMRG 385
Query: 486 RVVWENDELNVVPGSGKYI 504
VV +N EL + +GK++
Sbjct: 386 EVVIDNYEL-ISERTGKFV 403
|
Length = 409 |
| >gnl|CDD|222250 pfam13594, Amidohydro_5, Amidohydrolase | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 4e-16
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132
+ +EDG + A+ + + +V+DA GK+V+PG ID H HL E + +G A
Sbjct: 1 ILIEDGKIAAIGGDDLPDAEAEVIDAEGKYVLPGLIDMHVHLGEE----PGRETLETGAA 56
Query: 133 AALAGGTT 140
AALAGG T
Sbjct: 57 AALAGGVT 64
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 66 |
| >gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 4e-13
Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 22/233 (9%)
Query: 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARK 305
+ LG+ G P E A + L + TP VH+M + ++E IA+A+
Sbjct: 200 LRLGLPG-------DPASAETTALAALLELVAAIGTP---VHLMRISTARSVELIAQAKA 249
Query: 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365
G + L+LD L D + PP+ +AL + TG++ +
Sbjct: 250 RGLPITASTTWMHLLLDTEALASYD----PNLRLDPPLGNPSDRQALIEGVRTGVIDAIA 305
Query: 366 TDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECAR 425
DH + +K F + P G G+E + L+W +VE+G++S + ST AR
Sbjct: 306 IDHAPYTYEEKTVA---FAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPAR 362
Query: 426 IFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKV 478
P ++ G A++I+F+P ++ ++A++ HS + G+ +KG+V
Sbjct: 363 CLGQEPP--SLAPGQPAELILFDPQKTWTVSAQTLHSLSRNTPWLGQTLKGRV 413
|
Length = 418 |
| >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 8e-13
Identities = 102/449 (22%), Positives = 184/449 (40%), Gaps = 70/449 (15%)
Query: 70 IADVYVEDGIVVAVQPNI---NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD 126
I V +EDG++VA + +++D GK V PG +D + G+E +
Sbjct: 22 IGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRET 79
Query: 127 FFSGQAAALAGGTT---MHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-ITKWDE 182
S AA AGG T M D I+ F ++ A+++ + A ITK
Sbjct: 80 IASASRAAAAGGVTSIIMMPDTDPVIDDVALVEF--VKRTARDTAIVNIHPAAAITK--G 135
Query: 183 VVSDEM-EV-MVKEKGINSFKFFMAYKG-SFMINDELLIEGFKRCKSLGALAMVHAENGD 239
+ +EM E +++ G +F G + N +++ + A+ + D
Sbjct: 136 LAGEEMTEFGLLRAAGAVAF-----TDGRRSVANTQVMRRALTYARDFDAVIVHETR--D 188
Query: 240 AVFEGQKRMIE------LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293
G M E LG++G A P LE R +RLA + +
Sbjct: 189 PDLGGNGVMNEGLFASWLGLSGIPREAEVIP--LE-----RDLRLAALTRGRYHAAQISC 241
Query: 294 MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353
++ E + +A+ G +V ++ L L+++ + ++ T K +SPP+R A+
Sbjct: 242 AESAEALRRAKDRGLKVTAGVSINHLSLNENDI--GEYRTFFK--LSPPLRTEDDRVAMV 297
Query: 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIP-----NGVNGIEERMHLVWDTM---- 404
A+A+G + ++ + H Q D +++P G G+E T+
Sbjct: 298 EAVASGTIDIIVSSH----DPQDV----DTKRLPFSEAAAGAIGLE--------TLLAAA 341
Query: 405 ---VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH 461
+G++ + + ST A IF + G + G+ ADII+ + + + +
Sbjct: 342 LRLYHNGEVPLLRLIEALSTRPAEIFGL--PAGTLKPGAPADIIVIDLDEPWVVDPEDLK 399
Query: 462 SRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490
SR +E R +G+V TI G+ V+E
Sbjct: 400 SRSKNTPFEEARFQGRVVRTIVAGKTVYE 428
|
Length = 429 |
| >gnl|CDD|223479 COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 92/483 (19%), Positives = 164/483 (33%), Gaps = 104/483 (21%)
Query: 52 SSKILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ +LI+G ++ + D+ +EDG +VA+ N D +V+DA GK V+PG +
Sbjct: 1 MTMLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFV 60
Query: 109 DPHTHLAM----------------------EFMGSETIDD--FFSGQAA--ALAGGTTMH 142
+ HTHL T +D + A L GTT
Sbjct: 61 NAHTHLDQTLLRGLADDLPLLEWLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTA 120
Query: 143 IDFVIPINGSLTAGFEAYEK-----KAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
V + S A FEA + D F + DE + + E++ + G+
Sbjct: 121 RTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAETDEELEETEELLREAHGL 180
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-AENGDAVFEGQKRMIELGITGP 256
+A + ++ ELL + + G +H AE D V
Sbjct: 181 GRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEV--------------- 225
Query: 257 EGHALSRPPLLEGEATTRAIRLAE--FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEP 314
+LE RL + + + H + + EE+ ++G V+ P
Sbjct: 226 -------ERVLEPYGARPVERLDLLGLLGSHTLLAHCVHLSE-EELELLAESGASVVHCP 277
Query: 315 VVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNST 374
S L + P+R L G+ +GTD A N+
Sbjct: 278 R--------SNLKLGSGIA--------PVR---------RLLERGVNVALGTDGAASNNV 312
Query: 375 QKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 434
+D R + +++ G+ + + + A+ + G
Sbjct: 313 -----LDMLR--EMRTADLLQKLAGGLLAAQLPGEA-----LDMATLGGAKALGL-DDIG 359
Query: 435 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 494
++ VG AD+++ + ++ SRL V+ V+ + GR+V E+ L
Sbjct: 360 SLEVGKKADLVVLDASAPHLA-PLRPVSRL---VFAAGG--KDVDRVLVDGRLVMEDGRL 413
Query: 495 NVV 497
Sbjct: 414 LAR 416
|
Length = 421 |
| >gnl|CDD|236423 PRK09237, PRK09237, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 4e-12
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+L++GG V++ + D+ +EDG + AV +I+ KV+D +G +V PG ID H
Sbjct: 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHV 60
Query: 113 H 113
H
Sbjct: 61 H 61
|
Length = 380 |
| >gnl|CDD|234114 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 54 KILIKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ILIK GTV N ++ D+++ DG +V P KV+DA+GK VM GG+D
Sbjct: 1 EILIKNGTVYDPANGIDGEVMDIFIRDGKIVE--PVSGGTKPAKVIDASGKLVMAGGVDS 58
Query: 111 HTHLA 115
HTH+A
Sbjct: 59 HTHIA 63
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. Length = 556 |
| >gnl|CDD|221936 pfam13147, Amidohydro_4, Amidohydrolase | Back alignment and domain information |
|---|
Score = 63.3 bits (153), Expect = 7e-11
Identities = 58/355 (16%), Positives = 106/355 (29%), Gaps = 57/355 (16%)
Query: 97 DATGKFVMPGGIDPHTH---LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL 153
DA G+ V+PG +D H H L G + +G AA G T + L
Sbjct: 1 DAKGRLVLPGLVDLHVHGRPLDKSEDGGPYRAEAEAGLAALAGAGVTSALLDGGWEPELL 60
Query: 154 T-AGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
T A+ + E++ E + ++ A
Sbjct: 61 TRLLVRVLVDGLIGLGNLGATLEALKRLVELLEAEGVALPLASVLDG-PGLEALLREAKK 119
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
+L+ G + + G +
Sbjct: 120 AGLILLVGHAPADLGDGAVEKGLDALFLLALGHEVA------------------------ 155
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
+ LAE ++ + + A + + + A GL + L D
Sbjct: 156 -EDLHLAEILDPGAGLGLHVIAAAADLLLEGLVAAHAG-------GLAVVPLELLLRDAA 207
Query: 333 TA-AKYVMSPPIRASG-HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGV 390
A + + PP+R +AL+ LA G+ +G+DH + P G
Sbjct: 208 AAGVAFKVLPPLRLRERDREALRELLAAGVPVALGSDHAPDS--------------PAGP 253
Query: 391 NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 445
+ E + ++ + +RL + AR+ + G + VG AD++
Sbjct: 254 GDLLEAALFL----AALAGLTPEEALRLATLNPARLLGLGDDLGRLEVGKRADLV 304
|
This family of enzymes are a part of a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 304 |
| >gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-10
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 53 SKILIKGGTVVNAHHQ----QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+ LI+GGTV+ D+ +E + AV P+I D +V+DA G VMPG +
Sbjct: 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIE-APDAEVVDARGMIVMPGLV 60
Query: 109 DPHTHL 114
D H H
Sbjct: 61 DTHRHT 66
|
Length = 449 |
| >gnl|CDD|238629 cd01304, FMDH_A, Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-10
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 57 IKGGTVV---NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
IK GTV N + + D+++ DG +V + KV+DA+GK VM GG+D H+H
Sbjct: 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVES---SSGAKPAKVIDASGKVVMAGGVDMHSH 57
Query: 114 LA 115
+A
Sbjct: 58 IA 59
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. Length = 541 |
| >gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Query: 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMH 398
+ PP+R+ +A++AALA G + + +DH + +K F + G G+E +
Sbjct: 278 LDPPLRSQRDREAIRAALADGTIDAICSDHTPVDDDEKLL---PFAEATPGATGLELLLP 334
Query: 399 LVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITAR 458
L E+ R+TS AR+ + G + G+ AD+ +F+P++ + + R
Sbjct: 335 LTLKWADEAKVPLARALARITS-APARVLGL--PAGRLAEGAPADLCVFDPDAHWRVEPR 391
Query: 459 SHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
+ S+ + G + G+V T+ G+V +E
Sbjct: 392 ALKSQGKNTPFLGYELPGRVRATLVAGQVAFER 424
|
Length = 425 |
| >gnl|CDD|238634 cd01309, Met_dep_hydrolase_C, Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM--EFMGSETIDD 126
DG +VAV I D +V+DA GK V PG ID H+HL + E ET D
Sbjct: 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDA 52
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 359 |
| >gnl|CDD|238623 cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 6e-09
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 5/67 (7%)
Query: 55 ILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGID 109
ILI+ GT+V +++ DV VEDG +VAV P + + +V+DA GK VMPG ++
Sbjct: 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVN 60
Query: 110 PHTHLAM 116
HTHLAM
Sbjct: 61 THTHLAM 67
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. Length = 411 |
| >gnl|CDD|234738 PRK00369, pyrC, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 93/415 (22%), Positives = 148/415 (35%), Gaps = 87/415 (20%)
Query: 100 GKFVMPGGIDPHTHL-AMEFMGSETIDDFFSGQAAALAGGTTMHIDF---VIPING--SL 153
G ++PG ID H HL ++ E + SG + A GG T+ D + P+N ++
Sbjct: 42 GTLILPGAIDLHVHLRGLKLSYKEDV---ASGTSEAAYGGVTLVADMPNTIPPLNTPEAI 98
Query: 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
T E ++ +DY + +TK E V D++ I +K F
Sbjct: 99 TEKLAELEYYSR---VDYFVYSGVTKDPEKV-DKL-------PIAGYKIFP--------E 139
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
D E F+ L ++H E A+ +K E AL ++
Sbjct: 140 DLEREETFRVLLKSRKLKILHPEVPLALKSNRKLRRNCWY---EIAALY---YVKDYQN- 192
Query: 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333
VH+ + A++ G V P H V
Sbjct: 193 ---------------VHITHASNPRTVRLAKELGFTVDITP-------------HHLLVN 224
Query: 334 AAKYVMS---PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGV 390
K ++ PPIR L AL+ + + +DH +S +K + + P G+
Sbjct: 225 GEKDCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEK---LQPYEVCPPGI 279
Query: 391 NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450
+ ++ T+V G +S+ V L ST ARI + G I G A+ +
Sbjct: 280 AALSFTPPFIY-TLVSKGILSIDRAVELISTNPARILGI--PYGEIKEGYRANFTVI--- 333
Query: 451 SSFEITARSHHSRLDTNVYE----GRRVKGKVEVTIAGGRVVWENDELNVVPGSG 501
FE +S + V E G +K V TI G++ E V P G
Sbjct: 334 -QFE---DWRYSTKYSKVIETPLDGFELKASVYATIVQGKLA--YLEGEVFPVKG 382
|
Length = 392 |
| >gnl|CDD|224150 COG1229, FwdA, Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 53 SKILIKGGTV---VNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+ILIK G V +N + + D+ V+DG +V + + KV+DA+GK VMPGG+D
Sbjct: 3 MEILIKNGIVYDPLNGINGEKMDICVKDGKIV--EESEVSESKAKVIDASGKLVMPGGVD 60
Query: 110 PHTHLA 115
H+H+A
Sbjct: 61 SHSHVA 66
|
Length = 575 |
| >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPH 111
L+K V D+ + G ++A+ NIN+ D D++V+DA+GK ++PG ID H
Sbjct: 3 TLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQH 62
Query: 112 THLA 115
H+
Sbjct: 63 VHII 66
|
Length = 388 |
| >gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
ILIK G V+ + ++ ADV +E +V V+ NIN D V+DA+G V PG I+ HT
Sbjct: 3 ILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKPAD-TVIDASGSVVSPGFINAHT 61
Query: 113 HLAM 116
H M
Sbjct: 62 HSPM 65
|
Length = 424 |
| >gnl|CDD|180895 PRK07228, PRK07228, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 53 SKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILIK +V + + DV +ED + AV +++ D +DATGK V+PG I
Sbjct: 1 MTILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQ 60
Query: 110 PHTHL 114
H HL
Sbjct: 61 GHIHL 65
|
Length = 445 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 54 KILIKGGTVV--NAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
++I+ GTVV ADV + DG + A+ P ++ +V+DA G V PG ID H
Sbjct: 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILSTSAR-EVIDAAGLVVAPGFIDVH 59
Query: 112 TH 113
TH
Sbjct: 60 TH 61
|
Length = 415 |
| >gnl|CDD|224149 COG1228, HutI, Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 53 SKILIKGGTVVNAHHQQI-ADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
+ + G + V +EDG +VAV I++ +V+DA GK V PG ID
Sbjct: 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDA 69
Query: 111 HTHLAM 116
HTHL
Sbjct: 70 HTHLGF 75
|
Length = 406 |
| >gnl|CDD|216825 pfam01979, Amidohydro_1, Amidohydrolase family | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 9e-08
Identities = 62/362 (17%), Positives = 106/362 (29%), Gaps = 70/362 (19%)
Query: 102 FVMPGGIDPHTHLAMEFMGSETI-DDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFE-- 158
V+PG ID H HL + E + +G A L GTT +D N S+ E
Sbjct: 1 IVLPGLIDAHVHLESPLLRGEDSYEAILTGAKAMLRSGTTTVLDTPTSANTSIPLRKEIM 60
Query: 159 -----AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN 213
A + + + G + EVV D
Sbjct: 61 EGLAAAPKLEPNVELLLKGSVGGRAELGEVVIDG----------------------AGEE 98
Query: 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273
+ + K + G A A+ + E E
Sbjct: 99 AKAGADLIKVIEDGGKTAKAIDGVLPALAPHDPPTVSHEGLKNEVELAEETEEAEKLGLL 158
Query: 274 RAIRLAE-------FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326
I AE + + H + +D E I ++AG + P+ + +L
Sbjct: 159 VHIHAAEASGEVNAILGGVDLLAHCLHLDD-EAIELLKEAGSGIAHCPLSNESILHRG-- 215
Query: 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKI 386
+MS + G L +G +L K
Sbjct: 216 -------GRFSLMSGDAQGIG-------ELGSGGARLA----------------RLADKG 245
Query: 387 PNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 446
G + D ++ +S + +R+ + A+ + R G+I VG DAD+++
Sbjct: 246 GVVGLGTDGAGLNGKDFYLDPDGLSPIEALRMATINPAKALGLDDRVGSIEVGKDADLVV 305
Query: 447 FN 448
+
Sbjct: 306 VD 307
|
This family of enzymes are a a large metal dependent hydrolase superfamily. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyze the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit. Dihydroorotases (EC:3.5.2.3) are also included. Length = 307 |
| >gnl|CDD|238641 cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 24/242 (9%)
Query: 262 SRPPLLEGEATTRA--IRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGL 319
++P + ++ T A + LA N +++ HV S + + I A+ G +V E L
Sbjct: 125 TKPIVTHAKSQTLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHL 184
Query: 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG 379
L D + +Y + P + +AL L + TDH +K
Sbjct: 185 FLSQ------DDLPRGQYEVRPFLPTREDQEALWENLDY--IDCFATDHAPHTLAEKTG- 235
Query: 380 IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 439
K P G G+E + L+ T V G++++ D V T RIFN+ P+ +
Sbjct: 236 ----NKPPPGFPGVETSLPLLL-TAVHEGRLTIEDIVDRLHTNPKRIFNLPPQSDTYV-- 288
Query: 440 SDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPG 499
+ D+ + + I S+ +EG++VKGKV+ + G + + E+ PG
Sbjct: 289 -EVDL-----DEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAFIDGEIVAPPG 342
Query: 500 SG 501
G
Sbjct: 343 FG 344
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. Length = 344 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK ++ + V VEDG +VA+ P + + +++D G++++PG ID H H
Sbjct: 1 LIIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHG 60
Query: 115 AMEFMGSETIDDFFSGQAAALAG-GTT 140
+ + A ALA GTT
Sbjct: 61 GGGADFMDGTAEALKTIAEALAKHGTT 87
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|238621 cd01296, Imidazolone-5PH, Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 73 VYVEDGIVVAVQP----NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128
+ + DG + AV P + +DA G+ V PG +D HTHL F G D+F
Sbjct: 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLV--FAGDRV-DEF- 56
Query: 129 SGQAAALAGGTTMHI 143
AA LAG + I
Sbjct: 57 ---AARLAGASYEEI 68
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. Length = 371 |
| >gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I+IK V+ + V +EDG + V GD V+DA G VMPG ++ HT
Sbjct: 4 IIIKNAYVLTMDAGDLKKGSVVIEDGTITEVS-ESTPGDADTVIDAKGSVVMPGLVNTHT 62
Query: 113 HLAM 116
H AM
Sbjct: 63 HAAM 66
|
Length = 430 |
| >gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K G +V+ +I D+ + G +V V + +V+DA G++++PG ID H
Sbjct: 26 LVLKNGRIVDVVTGEIYKGDIAIAGGRIVGV-IGEYRAEATEVIDAAGRYIVPGFIDAHL 84
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTT 140
H+ + A L GTT
Sbjct: 85 HIESSMLTPSEFA------RAVLPHGTT 106
|
Length = 584 |
| >gnl|CDD|236478 PRK09356, PRK09356, imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHL 114
+ +EDG +V V P ++ +V+DA GK V PG ID HTHL
Sbjct: 29 GAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHL 74
|
Length = 406 |
| >gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 55 ILIKGGTV--VNAHHQQIADVYVEDGIVVAVQPN--IN--VGDDVKVLDATGKFVMPGGI 108
+++ G + ++ V ++DG +VAV + + G +V+D GKFV+PG +
Sbjct: 7 LILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFV 66
Query: 109 DPHTHLAM 116
D H HL
Sbjct: 67 DAHLHLIS 74
|
Length = 535 |
| >gnl|CDD|238617 cd01292, metallo-dependent_hydrolases, Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 48/300 (16%), Positives = 78/300 (26%), Gaps = 81/300 (27%)
Query: 108 IDPHTHLAM----------------EFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151
ID H HL E + +D A LAGG T +D
Sbjct: 2 IDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDM--GSTP 59
Query: 152 SLTAGFEAYEKKAKNS----------CMDYGFHMAITKWDEVVSDEMEV-MVKEKGINSF 200
T A E A+ + + A D + E G
Sbjct: 60 PPTTTKAAIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGL 119
Query: 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260
K Y + ++DE L + + LG ++HA + ++ L
Sbjct: 120 KLAGPY-TATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALL-------- 170
Query: 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320
+ + + HV +D E + ++AG + P
Sbjct: 171 --------------------RLGGRVVIGHVSHLDP-ELLELLKEAGVSLEVCP------ 203
Query: 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGI 380
+ R +AL+ L GI +GTD +
Sbjct: 204 ----LSNYLLG------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGTDLLAL 247
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. Length = 275 |
| >gnl|CDD|238618 cd01293, Bact_CD, Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 70 IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+ D+ +EDG + A+ P + V D + +DA G+ V+P +DPH HL
Sbjct: 14 LVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHL 58
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. Length = 398 |
| >gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 54 KILIKGGTVVN--AHHQQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDP 110
KI IKGG +++ A + AD+YV G + A+ Q D K +DA+G V PG +D
Sbjct: 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNAD-KTIDASGLIVCPGLVDL 60
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTT 140
L G E S AAA+AGG T
Sbjct: 61 SARLREP--GYEYKATLESEMAAAVAGGVT 88
|
Length = 425 |
| >gnl|CDD|238632 cd01307, Met_dep_hydrolase_B, Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
DV +E+G + AV + +++DA G +V PG ID H H
Sbjct: 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVH 42
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 338 |
| >gnl|CDD|232881 TIGR00221, nagA, N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 404 MVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT 456
+VE IS+TD R++S AR + R G++ VG DA++++F P+ FE+
Sbjct: 323 LVEFTNISLTDAARMSSLNPARALGIDDRLGSVTVGKDANLVVFTPD--FEVI 373
|
[Central intermediary metabolism, Amino sugars]. Length = 380 |
| >gnl|CDD|238625 cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 72 DVYVEDGIVVAV----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
V V DG +VAV + G +V+D GK V+PG ID H+HL +
Sbjct: 1 AVAVRDGRIVAVGSDAEAKALKGPATEVIDLKGKTVLPGFIDSHSHLLL 49
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. Length = 479 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 401 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITA 457
+VE G IS+ + VR+ S A+ + R G+I G DAD+++ + + + A
Sbjct: 316 VRNLVEWGGISLAEAVRMASLNPAKALGLDDRLGSIKPGKDADLVVLDDD--LNVKA 370
|
Length = 380 |
| >gnl|CDD|236369 PRK09061, PRK09061, D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 5e-05
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I+ G VV+ + DV ++ G + AV GD + +DATG V PG ID H
Sbjct: 21 LVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAIEGD--RTIDATGLVVAPGFIDLHA 78
Query: 113 H 113
H
Sbjct: 79 H 79
|
Length = 509 |
| >gnl|CDD|236002 PRK07369, PRK07369, dihydroorotase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 69 QIADVYVEDGIVVAVQPNI-NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127
+IADV +EDG + A++P+I + D +++DA+G + PG +D ++H + E G E +
Sbjct: 20 RIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSH-SGE-PGFEERETL 77
Query: 128 FSGQAAALAGGTT 140
S AAA AGG T
Sbjct: 78 ASLAAAAAAGGFT 90
|
Length = 418 |
| >gnl|CDD|238434 cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 9e-05
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450
MV+ G + + VR+ S A++ + RKG++ G DAD+++ + +
Sbjct: 317 NMVKWGGCPLEEAVRMASLNPAKLLGLDDRKGSLKPGKDADLVVLDDD 364
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. Length = 374 |
| >gnl|CDD|238624 cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 95 VLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF----------FSGQAAALAGGTTM 141
V+D GK +MPG ID HTHL + +AA AG TT+
Sbjct: 3 VIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTV 59
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. Length = 342 |
| >gnl|CDD|224733 COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 54 KILIKGGTVVNAHHQQIAD---VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+K G + H + D V +EDG + AV P + D +++D G ++PG ID
Sbjct: 1 MYALKNGRIFTGH--GVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDL 57
Query: 111 HTH-----LAMEFMGSETID 125
H H M+ ET++
Sbjct: 58 HIHGGGGADFMDAGSVETLE 77
|
Length = 380 |
| >gnl|CDD|235963 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 55 ILIKGGTVVNAHHQQI----ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGG 107
+LI GT + + + +E ++V + + D + +DA GK +MPG
Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGL 61
Query: 108 IDPHTHL 114
I+ H H+
Sbjct: 62 INSHNHI 68
|
Length = 442 |
| >gnl|CDD|130246 TIGR01178, ade, adenine deaminase | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I+IK +++ ++ +I D+ + +G + V + VKV+DA G++ +PG ID H
Sbjct: 2 IVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKY----NGVKVIDALGEYAVPGFIDAHI 57
Query: 113 HLAMEFM 119
H+ +
Sbjct: 58 HIESSML 64
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 552 |
| >gnl|CDD|226473 COG3964, COG3964, Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
IL+ GG +++ +I ++ + +G + A + + +++DA G V PG ID H
Sbjct: 6 ILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHV 64
Query: 113 H 113
H
Sbjct: 65 H 65
|
Length = 386 |
| >gnl|CDD|237967 PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
++++ +V + +EDG + A+ P + +DA G +++PG +D H
Sbjct: 1 MMEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGASALPGA--IDAEGDYLLPGLVDLH 58
Query: 112 T-HLAMEFM 119
T +L
Sbjct: 59 TDNLEKHLA 67
|
Length = 383 |
| >gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTH 113
LIK V + D+ + G ++A++ +N+ ++V V+D GK ++PG ID H H
Sbjct: 3 LIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVH 62
Query: 114 LA 115
+
Sbjct: 63 II 64
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. Length = 387 |
| >gnl|CDD|236184 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 55 ILIKGGTVV---NAHHQQIAD--VYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
+ IK + +A ++IAD + VE G +V V P +V DA G V PG +
Sbjct: 3 LWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLV 62
Query: 109 DPHTHL 114
+ H H
Sbjct: 63 NTHHHF 68
|
Length = 451 |
| >gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++++ + + + D+ + G + AV+P + + + +DA G+ V P +DPH H+
Sbjct: 4 LIVRNANLPDG--RTGIDIGIAGGRIAAVEPGLQ-AEAAEEIDAAGRLVSPPFVDPHFHM 60
|
Length = 426 |
| >gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120
D+ + DG + A+ P + +V D G +PG +D H HL F G
Sbjct: 17 VDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWG 66
|
Length = 391 |
| >gnl|CDD|236062 PRK07583, PRK07583, cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
D+ + DG + A+ P D++ +D G+ V P +D HTHL
Sbjct: 41 VDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHL 84
|
Length = 438 |
| >gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 66 HHQQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLA-MEFMG 120
+ + + VE+G +VAV + V++ D G +MPG ID H H E +
Sbjct: 2 EYFEDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIA 61
Query: 121 S 121
S
Sbjct: 62 S 62
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model [Purines, pyrimidines, nucleosides, and nucleotides, Other]. Length = 401 |
| >gnl|CDD|180548 PRK06380, PRK06380, metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTVVNAHHQQ---IADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPH 111
ILIK +V + ++ +VY+E +V V ++N D ++DATGK VMPG I+ H
Sbjct: 3 ILIKNAWIVTQNEKREILQGNVYIEGNKIVYVG-DVNEEADY-IIDATGKVVMPGLINTH 60
Query: 112 THLAM 116
H+ M
Sbjct: 61 AHVGM 65
|
Length = 418 |
| >gnl|CDD|218322 pfam04909, Amidohydro_2, Amidohydrolase | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 28/153 (18%), Positives = 46/153 (30%), Gaps = 9/153 (5%)
Query: 108 IDPHTHLAMEF--------MGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
ID H HL M D + L G + + + + S
Sbjct: 1 IDAHAHLPGGSIPDPRLPLMDRRGYDPRDASPEDYLVLGAALGVARAVIVAASCRGANNR 60
Query: 160 YEKKAKNSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLI 218
+A + A+ D E + E+E + E G + G +++ L
Sbjct: 61 VLAEALKRPGRFVGGAALPPPDPEDAAAELERRLAELGFRGVRLNPHPGGGPLLDPRLDD 120
Query: 219 EGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL 251
F+ LG +H GDA + L
Sbjct: 121 PIFEALAELGLPVDLHTGFGDAGEDLDAAQPLL 153
|
These proteins are amidohydrolases that are related to pfam01979. Length = 272 |
| >gnl|CDD|233321 TIGR01224, hutI, imidazolonepropionase | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 73 VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130
+ + G +V + + + +++D G V PG +DPHTHL F G +++F
Sbjct: 6 ILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLV--FAGDR-VNEF--- 59
Query: 131 QAAALAGGTTMHI 143
L G + + I
Sbjct: 60 -EMKLQGASYLEI 71
|
This enzyme catalyzes the third step in histidine degradation [Energy metabolism, Amino acids and amines]. Length = 377 |
| >gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 18/113 (15%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDP 110
ILI G +++ + +I ++ + + I+V + +++ A G V PG ID
Sbjct: 5 ILITNGHIIDPARNINEINNLRIINDIIV---DADKYPVASETRIIHADGCIVTPGLIDY 61
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSL-TAGFEAYEK 162
H H+ + G+E G T +D GS TA F+A+ +
Sbjct: 62 HAHVF--YDGTEG---GVRPDMYMPPNGVTTVVD-----AGSAGTANFDAFYR 104
|
Length = 379 |
| >gnl|CDD|238622 cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
E +S+ + VR + AR+F + R G I G ADI++F+P+ + R+ +R +
Sbjct: 331 ERKLLSLEEAVRKMTGLPARVFGLADR-GRIAPGYRADIVVFDPD---TLADRATFTRPN 386
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDE-LNVVPG 499
EG +E + G V + PG
Sbjct: 387 QPA-EG------IEAVLVNGVPVVRDGAFTGARPG 414
|
Length = 415 |
| >gnl|CDD|238633 cd01308, Isoaspartyl-dipeptidase, Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE 454
V+ G I + +R+ ++ ARI + KG I G DAD++I + +
Sbjct: 317 VKCGDIPLEVALRVITSNVARILKLRK-KGEIQPGFDADLVILDKDLDIN 365
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. Length = 387 |
| >gnl|CDD|226179 COG3653, COG3653, N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 55 ILIKGGTVVNA--HHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPH 111
++I+ G + + + DV + DG++ AV G + +DA G+ V PG ID H
Sbjct: 8 VVIRDGLIFDGTGNPPFTTDVGIRDGVIAAVAKGALDGTGCPEEVDAAGRIVAPGFIDVH 67
Query: 112 THLAMEFM 119
TH E +
Sbjct: 68 THYDAEVL 75
|
Length = 579 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| PLN02942 | 486 | dihydropyrimidinase | 100.0 | |
| KOG2584 | 522 | consensus Dihydroorotase and related enzymes [Nucl | 100.0 | |
| PRK13404 | 477 | dihydropyrimidinase; Provisional | 100.0 | |
| TIGR02033 | 454 | D-hydantoinase D-hydantoinase. This model represen | 100.0 | |
| PRK08323 | 459 | phenylhydantoinase; Validated | 100.0 | |
| cd01314 | 447 | D-HYD D-hydantoinases (D-HYD) also called dihydrop | 100.0 | |
| PLN02795 | 505 | allantoinase | 100.0 | |
| COG0044 | 430 | PyrC Dihydroorotase and related cyclic amidohydrol | 100.0 | |
| PRK06189 | 451 | allantoinase; Provisional | 100.0 | |
| PRK08044 | 449 | allantoinase; Provisional | 100.0 | |
| TIGR03178 | 443 | allantoinase allantoinase. This enzyme carries out | 100.0 | |
| cd01315 | 447 | L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinas | 100.0 | |
| PRK07627 | 425 | dihydroorotase; Provisional | 100.0 | |
| PRK07369 | 418 | dihydroorotase; Provisional | 100.0 | |
| PRK09236 | 444 | dihydroorotase; Reviewed | 100.0 | |
| PRK09059 | 429 | dihydroorotase; Validated | 100.0 | |
| PRK07575 | 438 | dihydroorotase; Provisional | 100.0 | |
| PRK02382 | 443 | dihydroorotase; Provisional | 100.0 | |
| PRK09060 | 444 | dihydroorotase; Validated | 100.0 | |
| PRK09357 | 423 | pyrC dihydroorotase; Validated | 100.0 | |
| PRK08417 | 386 | dihydroorotase; Provisional | 100.0 | |
| TIGR00857 | 411 | pyrC_multi dihydroorotase, multifunctional complex | 100.0 | |
| PRK01211 | 409 | dihydroorotase; Provisional | 100.0 | |
| PRK04250 | 398 | dihydroorotase; Provisional | 100.0 | |
| PRK00369 | 392 | pyrC dihydroorotase; Provisional | 100.0 | |
| cd01318 | 361 | DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; | 100.0 | |
| cd01317 | 374 | DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; | 100.0 | |
| cd01302 | 337 | Cyclic_amidohydrolases Cyclic amidohydrolases, inc | 100.0 | |
| PRK09061 | 509 | D-glutamate deacylase; Validated | 100.0 | |
| PRK06687 | 419 | chlorohydrolase; Validated | 100.0 | |
| PRK15493 | 435 | 5-methylthioadenosine/S-adenosylhomocysteine deami | 100.0 | |
| cd01297 | 415 | D-aminoacylase D-aminoacylases (N-acyl-D-Amino aci | 100.0 | |
| PRK07228 | 445 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| cd01298 | 411 | ATZ_TRZ_like TRZ/ATZ family contains enzymes from | 100.0 | |
| PRK09045 | 443 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK06380 | 418 | metal-dependent hydrolase; Provisional | 100.0 | |
| cd01316 | 344 | CAD_DHOase The eukaryotic CAD protein is a trifunc | 100.0 | |
| PRK08204 | 449 | hypothetical protein; Provisional | 100.0 | |
| PRK08203 | 451 | hydroxydechloroatrazine ethylaminohydrolase; Revie | 100.0 | |
| PRK07203 | 442 | putative chlorohydrolase/aminohydrolase; Validated | 100.0 | |
| PRK15446 | 383 | phosphonate metabolism protein PhnM; Provisional | 100.0 | |
| TIGR03314 | 441 | Se_ssnA putative selenium metabolism protein SsnA. | 100.0 | |
| PRK06151 | 488 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK06038 | 430 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK12393 | 457 | amidohydrolase; Provisional | 100.0 | |
| PRK08393 | 424 | N-ethylammeline chlorohydrolase; Provisional | 100.0 | |
| PRK09228 | 433 | guanine deaminase; Provisional | 100.0 | |
| TIGR02318 | 376 | phosphono_phnM phosphonate metabolism protein PhnM | 100.0 | |
| COG1574 | 535 | Predicted metal-dependent hydrolase with the TIM-b | 100.0 | |
| COG1228 | 406 | HutI Imidazolonepropionase and related amidohydrol | 100.0 | |
| TIGR02967 | 401 | guan_deamin guanine deaminase. This model describe | 100.0 | |
| cd01303 | 429 | GDEase Guanine deaminase (GDEase). Guanine deamina | 100.0 | |
| PRK12394 | 379 | putative metallo-dependent hydrolase; Provisional | 100.0 | |
| PRK09356 | 406 | imidazolonepropionase; Validated | 100.0 | |
| cd01293 | 398 | Bact_CD Bacterial cytosine deaminase and related m | 100.0 | |
| TIGR02022 | 455 | hutF formiminoglutamate deiminase. In some species | 100.0 | |
| PRK13206 | 573 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK07213 | 375 | chlorohydrolase; Provisional | 100.0 | |
| PRK13985 | 568 | ureB urease subunit beta; Provisional | 100.0 | |
| PRK09229 | 456 | N-formimino-L-glutamate deiminase; Validated | 100.0 | |
| PRK13308 | 569 | ureC urease subunit alpha; Reviewed | 100.0 | |
| cd00375 | 567 | Urease_alpha Urease alpha-subunit; Urease is a nic | 100.0 | |
| PRK13309 | 572 | ureC urease subunit alpha; Reviewed | 100.0 | |
| PRK08418 | 408 | chlorohydrolase; Provisional | 100.0 | |
| PRK13207 | 568 | ureC urease subunit alpha; Reviewed | 100.0 | |
| cd01313 | 418 | Met_dep_hydrolase_E Metallo-dependent hydrolases, | 100.0 | |
| COG0402 | 421 | SsnA Cytosine deaminase and related metal-dependen | 100.0 | |
| TIGR01975 | 389 | isoAsp_dipep isoaspartyl dipeptidase IadA. The L-i | 100.0 | |
| COG1820 | 380 | NagA N-acetylglucosamine-6-phosphate deacetylase [ | 100.0 | |
| PRK14085 | 382 | imidazolonepropionase; Provisional | 100.0 | |
| COG1001 | 584 | AdeC Adenine deaminase [Nucleotide transport and m | 100.0 | |
| PRK10657 | 388 | isoaspartyl dipeptidase; Provisional | 100.0 | |
| PRK07572 | 426 | cytosine deaminase; Validated | 100.0 | |
| TIGR01792 | 567 | urease_alph urease, alpha subunit. This model desc | 100.0 | |
| PRK05985 | 391 | cytosine deaminase; Provisional | 100.0 | |
| PRK09230 | 426 | cytosine deaminase; Provisional | 100.0 | |
| PRK10027 | 588 | cryptic adenine deaminase; Provisional | 100.0 | |
| TIGR01178 | 552 | ade adenine deaminase. The family described by thi | 100.0 | |
| TIGR00221 | 380 | nagA N-acetylglucosamine-6-phosphate deacetylase. | 100.0 | |
| cd01312 | 381 | Met_dep_hydrolase_D Metallo-dependent hydrolases, | 100.0 | |
| PRK09237 | 380 | dihydroorotase; Provisional | 100.0 | |
| cd01296 | 371 | Imidazolone-5PH Imidazolonepropionase/imidazolone- | 100.0 | |
| TIGR01224 | 377 | hutI imidazolonepropionase. This enzyme catalyzes | 100.0 | |
| PRK11170 | 382 | nagA N-acetylglucosamine-6-phosphate deacetylase; | 100.0 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 99.98 | |
| PLN02303 | 837 | urease | 99.98 | |
| PRK07583 | 438 | cytosine deaminase-like protein; Validated | 99.98 | |
| cd01308 | 387 | Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hy | 99.98 | |
| cd01294 | 335 | DHOase Dihydroorotase (DHOase) catalyzes the rever | 99.97 | |
| cd00854 | 374 | NagA N-acetylglucosamine-6-phosphate deacetylase, | 99.97 | |
| KOG3968 | 439 | consensus Atrazine chlorohydrolase/guanine deamina | 99.97 | |
| cd01309 | 359 | Met_dep_hydrolase_C Metallo-dependent hydrolases, | 99.97 | |
| PRK06846 | 410 | putative deaminase; Validated | 99.97 | |
| COG3964 | 386 | Predicted amidohydrolase [General function predict | 99.96 | |
| cd01304 | 541 | FMDH_A Formylmethanofuran dehydrogenase (FMDH) sub | 99.96 | |
| COG3454 | 377 | Metal-dependent hydrolase involved in phosphonate | 99.96 | |
| cd01300 | 479 | YtcJ_like YtcJ_like metal dependent amidohydrolase | 99.95 | |
| cd01307 | 338 | Met_dep_hydrolase_B Metallo-dependent hydrolases, | 99.95 | |
| TIGR03121 | 556 | one_C_dehyd_A formylmethanofuran dehydrogenase sub | 99.95 | |
| TIGR00856 | 341 | pyrC_dimer dihydroorotase, homodimeric type. This | 99.95 | |
| TIGR03583 | 365 | EF_0837 probable amidohydrolase EF_0837/AHA_3915. | 99.94 | |
| PRK05451 | 345 | dihydroorotase; Provisional | 99.94 | |
| cd01295 | 422 | AdeC Adenine deaminase (AdeC) directly deaminates | 99.93 | |
| COG0804 | 568 | UreC Urea amidohydrolase (urease) alpha subunit [A | 99.93 | |
| PLN02599 | 364 | dihydroorotase | 99.91 | |
| COG3653 | 579 | N-acyl-D-aspartate/D-glutamate deacylase [Secondar | 99.9 | |
| cd01306 | 325 | PhnM PhnM is believed to be a subunit of the membr | 99.89 | |
| PF13147 | 304 | Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2 | 99.87 | |
| PF01979 | 333 | Amidohydro_1: Amidohydrolase family; InterPro: IPR | 99.85 | |
| KOG3892 | 407 | consensus N-acetyl-glucosamine-6-phosphate deacety | 99.84 | |
| COG1229 | 575 | FwdA Formylmethanofuran dehydrogenase subunit A [E | 99.76 | |
| cd01305 | 263 | archeal_chlorohydrolases Predicted chlorohydrolase | 99.72 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 99.64 | |
| PF13594 | 68 | Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1 | 99.59 | |
| PRK06886 | 329 | hypothetical protein; Validated | 99.56 | |
| cd01292 | 275 | metallo-dependent_hydrolases Superfamily of metall | 99.55 | |
| TIGR01430 | 324 | aden_deam adenosine deaminase. This family include | 99.07 | |
| COG0418 | 344 | PyrC Dihydroorotase [Nucleotide transport and meta | 99.03 | |
| cd01310 | 251 | TatD_DNAse TatD like proteins; E.coli TatD is a cy | 98.97 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 98.94 | |
| TIGR00010 | 252 | hydrolase, TatD family. Several genomes have multi | 98.89 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 98.85 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 98.85 | |
| PRK10812 | 265 | putative DNAse; Provisional | 98.84 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 98.82 | |
| PRK09875 | 292 | putative hydrolase; Provisional | 98.79 | |
| KOG2902 | 344 | consensus Dihydroorotase [Nucleotide transport and | 98.64 | |
| PRK11449 | 258 | putative deoxyribonuclease YjjV; Provisional | 98.64 | |
| PRK10425 | 258 | DNase TatD; Provisional | 98.58 | |
| PF02126 | 308 | PTE: Phosphotriesterase family; InterPro: IPR00155 | 98.42 | |
| PF01026 | 255 | TatD_DNase: TatD related DNase The Pfam entry find | 98.39 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 98.11 | |
| COG1735 | 316 | Php Predicted metal-dependent hydrolase with the T | 98.07 | |
| PF12890 | 142 | DHOase: Dihydro-orotase-like; InterPro: IPR024403 | 97.87 | |
| cd01321 | 345 | ADGF Adenosine deaminase-related growth factors (A | 97.77 | |
| PTZ00124 | 362 | adenosine deaminase; Provisional | 97.76 | |
| cd00443 | 305 | ADA_AMPD Adenosine/AMP deaminase. Adenosine deamin | 97.45 | |
| PF04909 | 273 | Amidohydro_2: Amidohydrolase; InterPro: IPR006992 | 97.36 | |
| PF00962 | 331 | A_deaminase: Adenosine/AMP deaminase immunodeficie | 97.33 | |
| cd01311 | 263 | PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) | 97.09 | |
| COG1816 | 345 | Add Adenosine deaminase [Nucleotide transport and | 96.95 | |
| PF07908 | 48 | D-aminoacyl_C: D-aminoacylase, C-terminal region; | 96.55 | |
| COG2159 | 293 | Predicted metal-dependent hydrolase of the TIM-bar | 96.55 | |
| TIGR01431 | 479 | adm_rel adenosine deaminase-related growth factor. | 96.55 | |
| PF00449 | 121 | Urease_alpha: Urease alpha-subunit, N-terminal dom | 96.49 | |
| KOG1097 | 399 | consensus Adenine deaminase/adenosine deaminase [N | 95.96 | |
| PRK00912 | 237 | ribonuclease P protein component 3; Provisional | 94.42 | |
| COG4464 | 254 | CapC Capsular polysaccharide biosynthesis protein | 90.74 | |
| PRK08609 | 570 | hypothetical protein; Provisional | 89.58 | |
| COG3618 | 279 | Predicted metal-dependent hydrolase of the TIM-bar | 89.56 | |
| PF07969 | 404 | Amidohydro_3: Amidohydrolase family; InterPro: IPR | 88.17 | |
| COG1831 | 285 | Predicted metal-dependent hydrolase (urease superf | 85.1 | |
| PRK06361 | 212 | hypothetical protein; Provisional | 83.57 | |
| PRK08392 | 215 | hypothetical protein; Provisional | 83.57 | |
| KOG3020 | 296 | consensus TatD-related DNase [Replication, recombi | 82.71 | |
| cd01319 | 496 | AMPD AMP deaminase (AMPD) catalyzes the hydrolytic | 82.42 | |
| PLN03055 | 602 | AMP deaminase; Provisional | 81.89 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 80.71 |
| >PLN02942 dihydropyrimidinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=539.64 Aligned_cols=482 Identities=85% Similarity=1.332 Sum_probs=424.8
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
+.+++|+|++|++++....++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..+..+....+++.++.
T Consensus 4 ~~~lli~~~~v~~~~~~~~~~i~I~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PG~ID~H~H~~~~~~~~~~~ed~~s~s 83 (486)
T PLN02942 4 STKILIKGGTVVNAHHQELADVYVEDGIIVAVAPNLKVPDDVRVIDATGKFVMPGGIDPHTHLAMPFMGTETIDDFFSGQ 83 (486)
T ss_pred CCcEEEECcEEEcCCCCeEeEEEEECCEEEEEcCCCCCCCCCeEEECCCCEEecCEeeeeeccCcccCCCcccchHHHHH
Confidence 56799999999997766778999999999999876433335789999999999999999999988754556789999999
Q ss_pred HHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc
Q 009282 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (538)
++++.+||||++||..+......+.++.......+..++++++........+...++..+.+..|+..+|+|+.+++...
T Consensus 84 ~aAl~gGvTTv~D~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~l~~~~gv~~~k~~~~~~~~~~ 163 (486)
T PLN02942 84 AAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKAEKSCMDYGFHMAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLM 163 (486)
T ss_pred HHHHcCCCeEEEeCCCCCCCCHHHHHHHHHHHHhhcCCCEEEEEEecCCcHhHHHHHHHHHHhCCCceEEEEEecCCCCC
Confidence 99999999999999765544446666665555555667887776555444444567777765678889999988877667
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
.+.+.+.+.++.++++|..+++|+++........+.....|..++..|...+|..+|..++.+++.++...+.++|+.|+
T Consensus 164 ~~~~~l~~~~~~a~~~~~~v~~HaE~~~~~~~~~~~~~~~G~~~~~~~~~~rP~~~E~~av~~~~~la~~~g~~~~i~H~ 243 (486)
T PLN02942 164 VTDELLLEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHV 243 (486)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChhhhhccCCchHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 78999999999999999999999998877777777777788888888888899999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 292 ~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
++....+.++.+++.|+.|++++++|++.++++.+...++..++.++++||+|...+++.++++++.|+++++||||.|+
T Consensus 244 s~~~~~e~i~~~k~~G~~Vt~e~~ph~L~l~~~~~~~~~~~~~~~~k~~PPlr~~~~~~~L~~~l~~G~i~~igTDh~p~ 323 (486)
T PLN02942 244 MSIDAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKALQAALSSGILQLVGTDHCPF 323 (486)
T ss_pred CCHHHHHHHHHHHHCCCcEEEEECchhheeCHHHhcCcccccCcceEECCCCCCHHHHHHHHHHhcCCceEEEECCCCCC
Confidence 99999899999999999999999999999999887655555668899999999999999999999999999999999999
Q ss_pred ChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCC
Q 009282 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 451 (538)
Q Consensus 372 ~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~ 451 (538)
+...++++.++|+.++.|+++++..++..+++++..+.++++++++++|.|||+++|+.+++|+|++|+.||||++|++.
T Consensus 324 ~~~~k~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~i~~~~~l~~~t~~pA~~lgl~~~~G~l~~G~~ADlv~vd~~~ 403 (486)
T PLN02942 324 NSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISPTDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNS 403 (486)
T ss_pred ChHHhhcccCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCCcCCCCcCCEEEEcCCc
Confidence 99888876668999999999999999988877787878999999999999999999997778999999999999999999
Q ss_pred ceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCccccccchhhhHHHhhhccccc
Q 009282 452 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAPV 531 (538)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (538)
.+.++...+.++..|+||+|..+.++|..||++|++||++|+++...+.|+++++..++++|.+..+.|+.|+++|++|+
T Consensus 404 ~~~v~~~~~~s~~~~~py~g~~l~g~v~~tiv~G~~v~~~g~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (486)
T PLN02942 404 TFTISAKTHHSRIDTNVYEGRRGKGKVEVTISQGRVVWENGELKVVRGSGRYIEMPPFSYLFDGIQKADAAYLSSLRAPV 483 (486)
T ss_pred cEEEcHHHccccCCCCCccCcEeeeeEEEEEECCEEEEECCEEeccCCCceEecCCCcccccccccccccccCccccccc
Confidence 99999888889999999999999999999999999999999999888899999998776688888999999999999999
Q ss_pred cc
Q 009282 532 KR 533 (538)
Q Consensus 532 ~~ 533 (538)
|+
T Consensus 484 ~~ 485 (486)
T PLN02942 484 KR 485 (486)
T ss_pred cc
Confidence 87
|
|
| >KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=474.78 Aligned_cols=483 Identities=55% Similarity=0.906 Sum_probs=458.0
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
...++|+|++|++.+.....||+++||.|.+|+++..++.+.++||++|++|+||.||.|+|+-.+++|..+.+++.++.
T Consensus 13 s~rllikgg~vvN~d~~~~aDV~vedGiI~~vg~~l~ipgg~~~ida~g~~ViPGgID~Hthlq~p~~G~ts~DdF~~GT 92 (522)
T KOG2584|consen 13 SNRLLIKGGRVVNDDQSFKADVYVEDGIIKEVGENLIIPGGVKVIDATGKMVIPGGIDPHTHLQMPFMGMTSVDDFFQGT 92 (522)
T ss_pred ccceeeeCCEEEccCCceeeeEEeccCEEEEecccEEcCCCceEEecCCcEEecCccCccceeccccCCccchhhhhccc
Confidence 45689999999999988999999999999999999988989999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCC
Q 009282 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (538)
+++++.|+|+++|+..+... .+.+.++.+.+.+. ...++++++..++.|.....+++.-+.++.|++.|++|+.|.+.
T Consensus 93 kAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglhv~It~W~~~v~eem~~l~~ekGvnsF~~fmayk~~ 172 (522)
T KOG2584|consen 93 KAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLHVGITWWSPSVKEEMEILVKEKGVNSFKFFMAYKDL 172 (522)
T ss_pred HHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeeeEeeeecCcchHHHHHHHhhhcCcceEEeeeeeccc
Confidence 99999999999999877764 78888888888875 68999999999999999999999999989999999999999999
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
++++++++.+.+..+++.|....+|+++.+.+.+..+.+.+.|++++++|...||...|.+++.+++.++...+.+++++
T Consensus 173 ~~v~d~~lye~l~~~~~lgala~vHAEngd~iae~q~~~l~~gitgPEgh~lSRPee~EaEA~~rai~ia~~~ncPlyvv 252 (522)
T KOG2584|consen 173 YMVRDSELYEALKVCAELGALAMVHAENGDAIAEGQQRLLELGITGPEGHELSRPEELEAEATNRAITIARQANCPLYVV 252 (522)
T ss_pred cccCHHHHHHHHHHHhhcchhheehhhcchhhhhhhhHHHHcCCcCcccccccCchhhhHHHHHHHHHHHHhcCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcc-cHHHHHHHHhcCCceEEeCCC
Q 009282 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG-HNKALQAALATGILQLVGTDH 368 (538)
Q Consensus 290 h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~-~~~~l~~~l~~Gv~~~lgtD~ 368 (538)
|..+....+.|.+++++|..|..++....+..+...+++.+|..+..+.+.||+|... ....++++|..|..-..||||
T Consensus 253 hVmsksaa~~Ia~aRk~g~~v~gepita~l~~dg~hy~~~~w~~Aa~~v~sPPlr~d~~t~~~L~~lLa~g~L~~tgSdh 332 (522)
T KOG2584|consen 253 HVMSKSAADAIALARKKGRVVFGEPITASLGTDGSHYWSKDWDHAAAFVTSPPLRPDPTTPDGLMDLLAEGDLQLTGSDH 332 (522)
T ss_pred EEeehhHHHHHHHHHhcCceeecccchhhhcccchhhccCChhhcceeeeCCCCCCCCCCHHHHHHHHhcCccceeecCC
Confidence 9999988899999999999999999999999999999999999999999999999887 789999999999999999999
Q ss_pred CCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEc
Q 009282 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 448 (538)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld 448 (538)
++++..+|.++.+.|...|.|++|.+.++++.|.+.+..|.|++.+-+.-.+.|+|+++++.+++|+|++|.+||+||||
T Consensus 333 ctf~~~qKalgKddFt~ip~GvnGvedrMsviwekgv~~G~md~~~fVavtstnaAkifnlYprKGrIavGsDADiVIwd 412 (522)
T KOG2584|consen 333 CTFTTEQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADIVIWD 412 (522)
T ss_pred CCCCHHHHhhccCccccCCCccccccccceeeeehhcccCccCcccEEEEecccchhheeccCcCceecccCCCcEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCc-cccccchhhh--HHHhh
Q 009282 449 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN-YLFHGLDKAD--AKYLS 525 (538)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~ 525 (538)
++...+|++........++.|+|+...+.+.-|+.+||+||++|.+....+.||++++.+++ .++.+++++| ..+..
T Consensus 413 p~at~tIS~~th~~~~d~NifEGm~~~G~plvtIsrGriv~eng~~~v~~g~G~fip~~~f~~~vy~~i~~r~~~~~~~~ 492 (522)
T KOG2584|consen 413 PNATKTISAKTHHSANDFNIFEGMTVHGVPLVTISRGRVVYENGNLVVTEGSGRFIPRSPFPDYVYKRIKARDKTAELRG 492 (522)
T ss_pred CCcceEeccccccccccceeecCcEecceeEEEEeCCeEEEecCcEEEecCCCceeeCCCCcHHHHHHHHhhhccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 5999999998 66667
Q ss_pred hcccccccc
Q 009282 526 SLQAPVKRL 534 (538)
Q Consensus 526 ~~~~~~~~~ 534 (538)
..|.|.+.+
T Consensus 493 v~r~~y~~~ 501 (522)
T KOG2584|consen 493 VPRGPYDGP 501 (522)
T ss_pred ccccccCCc
Confidence 777766543
|
|
| >PRK13404 dihydropyrimidinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-58 Score=474.72 Aligned_cols=454 Identities=37% Similarity=0.614 Sum_probs=386.2
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccccccccccccc-CCCCChhhHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFSG 130 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~-~~~~~~~~~~~~ 130 (538)
+++++|+|++|++++...+++|+|+||+|++|++.. +.+.++||++|++|+|||||+|+|+..+. .+....+++...
T Consensus 3 ~~d~~i~~~~v~~~~~~~~~~i~I~dg~I~~i~~~~--~~~~~~iD~~G~~v~PG~ID~H~H~~~~~~~~~~~~e~~~~~ 80 (477)
T PRK13404 3 AFDLVIRGGTVVTATDTFQADIGIRGGRIAALGEGL--GPGAREIDATGRLVLPGGVDSHCHIDQPSGDGIMMADDFYTG 80 (477)
T ss_pred CCcEEEECCEEEcCCCceEEEEEEECCEEEEecCCC--CCCCeEEECCCCEEecCEEEeEEcCCccccCCccccchHHHH
Confidence 457899999999987666789999999999998753 34578999999999999999999997641 134456888899
Q ss_pred HHHHHhCCcEEEecccCCCC-CCHHHHHHHHHHHh-cccceeeeeeeeeecCChhhH-HHHHHHHHHcCCcEEEEEeeeC
Q 009282 131 QAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVS-DEMEVMVKEKGINSFKFFMAYK 207 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ik~~~~~~ 207 (538)
.+.++.+||||++++..... ....+.++...... ....++++++........+.. +++..+. +.|+..+|+|.++.
T Consensus 81 s~aa~~gGvTtv~~~~~~~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~v~~l~-~~G~~~iKi~~~~~ 159 (477)
T PRK13404 81 TVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRAAGKAVIDYAFHLIVADPTEEVLTEELPALI-AQGYTSFKVFMTYD 159 (477)
T ss_pred HHHHHcCCccEEEEccCCCCCCCHHHHHHHHHHHhccCcEEEEEEEEEecCCChhhHHHHHHHHH-HcCCCEEEEEecCC
Confidence 99999999999999864322 25566666665544 335778887766654444433 5777776 78999999998654
Q ss_pred CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEE
Q 009282 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (538)
Q Consensus 208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 287 (538)
+ ...+.+.+.++++.|+++|.++..|+++...+....+.+...|......|...+|...|...+.+++.+++..+.++|
T Consensus 160 ~-~~~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h 238 (477)
T PRK13404 160 D-LKLDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL 238 (477)
T ss_pred C-CCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3 456889999999999999999999999887766666677788988888888899999999999999999999999999
Q ss_pred EEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCC
Q 009282 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (538)
Q Consensus 288 ~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD 367 (538)
+.|+++....+.++.+++.|+.+++++++|++.++++.+..... .+..++++||+|...+++++|+++..|..++++||
T Consensus 239 i~Hvs~~~~~~~i~~~k~~g~~vt~e~~ph~L~l~~~~~~~~~~-~g~~~k~~Pplr~~~d~~aL~~~l~~G~id~i~sD 317 (477)
T PRK13404 239 IVHVSGREAAEQIRRARGRGLKIFAETCPQYLFLTAEDLDRPGM-EGAKYICSPPPRDKANQEAIWNGLADGTFEVFSSD 317 (477)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEEChhhhccCHHHhcCccc-cCCceEECCCCCChHHHHHHHHHHhCCCceEEecC
Confidence 99999999999999999999999999999999999987743211 24789999999999999999999999999999999
Q ss_pred CCCCChhhhh---c-C-ccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCc
Q 009282 368 HCAFNSTQKA---F-G-IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDA 442 (538)
Q Consensus 368 ~~~~~~~~~~---~-~-~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~A 442 (538)
|.|++..+|. + . ..+|+.+|.|++|++..++.+++.++..+++|++++++++|.|||++||+.+++|+|++|+.|
T Consensus 318 Hap~~~~eK~~~~~~~~~~~~~~~~~G~~gie~~l~~ll~~~v~~~~ls~~~~~~~~t~~pA~~lgl~~~~G~i~~G~~A 397 (477)
T PRK13404 318 HAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVVKGRISLNRFVALTSTNPAKLYGLYPRKGAIAIGADA 397 (477)
T ss_pred CCCCCcccchhhhhccCCCCHhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCceecCCCcC
Confidence 9999865441 1 1 136888999999999999999988887778999999999999999999997678999999999
Q ss_pred cEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCc
Q 009282 443 DIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510 (538)
Q Consensus 443 Dlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~ 510 (538)
|||++|.+..+.++.+.+.+...|+||+|..+.++|..||++|++||++|+++...+.|+++++.+..
T Consensus 398 Dlvivd~~~~~~v~~~~~~~~~~~sp~~g~~~~g~v~~tiv~G~vv~~~g~~~~~~~~G~~~~~~~~~ 465 (477)
T PRK13404 398 DIAIWDPDREVTITNADLHHAADYTPYEGMRVTGWPVTVLSRGRVVVEDGELVAERGSGQFLARSLPD 465 (477)
T ss_pred CEEEEcCCccEEEchHHhcccCCCCcccceEEeeeEEEEEECCEEEEECCEEecCCCceeEecCCCcc
Confidence 99999999999999988999999999999999999999999999999999999877789999975433
|
|
| >TIGR02033 D-hydantoinase D-hydantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-58 Score=477.13 Aligned_cols=451 Identities=53% Similarity=0.821 Sum_probs=383.5
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHH
Q 009282 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~ 134 (538)
++|+|++|++++...+++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..+..+..+++++....+++
T Consensus 1 ~li~n~~vv~~~~~~~~~V~I~dg~I~~Ig~~~~~~~~~~vIDa~G~~vlPGlID~H~H~~~~~~~~~~~e~~~~~s~~a 80 (454)
T TIGR02033 1 KLIRGGTVVNADDVFQADVLIEGGKIVAVGRNLSPPDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTADDFFTGTKAA 80 (454)
T ss_pred CEEECcEEEcCCCceEEEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecCEecceeccCcccCCCCCcchHHHHHHHH
Confidence 37999999998877789999999999999975433334689999999999999999999987644456788898889999
Q ss_pred HhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccC
Q 009282 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (538)
Q Consensus 135 l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (538)
+++||||++||....+. ...+.++....... ...++++++......+.+...+......+.|+..+|+++++++.+..
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 160 (454)
T TIGR02033 81 AAGGTTTIIDFALPHKGESLTEALETWHEKAEGKSVIDYGFHMMITHWNDEVLEEHIPELVEEGITSFKVFMAYKNLLMV 160 (454)
T ss_pred HhCCCCEEEeCcCCCCCCCHHHHHHHHHHHhccCceEEEEEEecccCCcHHHHHHHHHHHHhcCCcEEEEEeecCCCCCC
Confidence 99999999998755432 45566665554443 24566666655444444445553333336789999999988777788
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc
Q 009282 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (538)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~ 292 (538)
+.+.+++.++.|+++|.++++|+++........+.+.+.|......|...+|...+...+.+++.++...+.+++++|++
T Consensus 161 ~~~~l~~~~~~a~~~~~~v~~H~E~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~~v~~~~~~~~~~~~~~~i~H~s 240 (454)
T TIGR02033 161 DDEELFEILKRAKELGALLQVHAENGDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVS 240 (454)
T ss_pred CHHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHcCCCChhHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 99999999999999999999999887777667777778899888899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCC
Q 009282 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (538)
Q Consensus 293 ~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~ 372 (538)
+...++.++.+++.|+.++++.++|++.++.+.+...++.. ..++++||+|...+++.++++++.|+.+++||||.|++
T Consensus 241 ~~~~~~~i~~~~~~g~~vt~e~~p~~l~~~~~~~~~~~~~~-~~~~~~pPlr~~~~~~~l~~~l~~G~i~~igtDh~p~~ 319 (454)
T TIGR02033 241 TASAVDEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFEG-AKYVCSPPLREKEDQDALWSALSSGALQTVGSDHCPFN 319 (454)
T ss_pred CHHHHHHHHHHHHCCCeEEEEcCchheeecHHHhcCccccc-ceeEECCCCCChhhHHHHHHHhhcCCeEEEECCCCCCC
Confidence 98878999999999999999999999999988775444433 56789999999999999999999999999999999998
Q ss_pred hhhhh-cCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCC
Q 009282 373 STQKA-FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 451 (538)
Q Consensus 373 ~~~~~-~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~ 451 (538)
...+. ...++|+..|+|++|+++.++.++++++..+.++++++++++|.|||++||+.+++|+|++|+.||||++|.+.
T Consensus 320 ~~~k~~~~~~~~~~~~~G~~g~e~~l~~l~~~~v~~~~~~~~~~~~~~t~~pa~~~gl~~~~G~l~~G~~AD~~i~d~~~ 399 (454)
T TIGR02033 320 FAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVATGRITLEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNR 399 (454)
T ss_pred HHHhhhcccCCHhhCCCCCchHHhHHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHcCCCCCCCccccCCcCCEEEEcCCc
Confidence 77652 22347888999999999999999988887788999999999999999999997678999999999999999999
Q ss_pred ceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeec
Q 009282 452 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 506 (538)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~ 506 (538)
.+.++.+++.+...|+||.|....++|..||++|++||++|+++...+.|+++++
T Consensus 400 ~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~g~~~~~ 454 (454)
T TIGR02033 400 TTVISAETHHDNADYNPFEGFKVQGAVVSVLSRGRVVVEDGQFVGTAGSGRFIKR 454 (454)
T ss_pred CeeechHHhhccCCCCcccCeEEeeeEEEEEECCEEEEECCEEecCCCCcceecC
Confidence 9999988888999999999998899999999999999999999987777999873
|
This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. |
| >PRK08323 phenylhydantoinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-57 Score=473.77 Aligned_cols=452 Identities=51% Similarity=0.813 Sum_probs=390.1
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (538)
+++|+|++|++++...+++|+|+||||++|++. .+.++||++|++|+|||||+|+|+..++.+....+++....+.
T Consensus 2 d~li~n~~v~~~~~~~~~~v~I~~g~I~~i~~~----~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~ 77 (459)
T PRK08323 2 STLIKNGTVVTADDTYKADVLIEDGKIAAIGAN----LGDEVIDATGKYVMPGGIDPHTHMEMPFGGTVSSDDFETGTRA 77 (459)
T ss_pred cEEEECCEEEcCCCceEEEEEEECCEEEEEecC----CCceEEECCCCEEeccEEeeeeccccccCCccccCcHHHHHHH
Confidence 589999999998877789999999999999875 2468999999999999999999997654444567888888899
Q ss_pred HHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc
Q 009282 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (538)
Q Consensus 134 ~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (538)
++++||||++|+....+. ...+.++....... ...++++++......+.+.++++..+. +.|...+|+++++++.+.
T Consensus 78 a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~ 156 (459)
T PRK08323 78 AACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGFHMIITDWNEVVLDEMPELV-EEGITSFKLFMAYKGALM 156 (459)
T ss_pred HHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEEEEEecCCcHHHHHHHHHHH-HcCCCEEEEEEecCCCCC
Confidence 999999999998654432 45566665555432 356777766554444555677787777 678899999988877778
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
.+.+.++++++.|+++|.++++|+++........+.+.+.|......|...+|...+...+.++++++...+.++++.|+
T Consensus 157 ~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~~a~~~~~~~~i~H~ 236 (459)
T PRK08323 157 LDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHV 236 (459)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 89999999999999999999999988777766666767778887777888899999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 292 ~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
++....+.++.+++.|+.|+++.++|++.++.+.+...++..+..++++||+|...+.+++++++++|+.++++|||.|+
T Consensus 237 s~~~~~~~i~~ak~~g~~vt~e~~p~~l~l~~~~~~~~~~~~g~~~k~~pPlr~~~~~~~l~~~l~~G~i~~i~sDh~p~ 316 (459)
T PRK08323 237 SCKEALEAIRRARARGQRVFGETCPQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDALWRGLQDGDLQVVATDHCPF 316 (459)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEcCccceeecHHHhcCCccccccceEECCCCCChHHHHHHHHHhhcCCeeEEECCCCCC
Confidence 99988899999999999999999999999998877544332356789999999999999999999999999999999999
Q ss_pred Chhhhhc-CccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCC
Q 009282 372 NSTQKAF-GIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450 (538)
Q Consensus 372 ~~~~~~~-~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~ 450 (538)
+...+++ +.++|+..|+|+++.+..++.+++..+..+.++++++++++|.|||++||+.+++|+|++|+.|||||+|.+
T Consensus 317 ~~~~~~~~~~~~~~~~p~G~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~t~~pA~~lgl~~~~G~l~~G~~ADlvi~d~~ 396 (459)
T PRK08323 317 CFEQKKQLGRGDFTKIPNGTPGVEDRMPLLFSEGVMTGRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPN 396 (459)
T ss_pred ChHHhcccccCCHhhCCCCcchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCcccCCCCcCCEEEEcCC
Confidence 8877763 345788999999999999999997777777899999999999999999999777899999999999999999
Q ss_pred CceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCc
Q 009282 451 SSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510 (538)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~ 510 (538)
..+.++.+++.+...++||+|..+.++|..||++|++||++|+++...+.|++++++.++
T Consensus 397 ~~~~v~~~~~~s~~~~s~~~g~~~~g~v~~viv~G~~v~~~g~~~~~~~~G~~~~~~~~~ 456 (459)
T PRK08323 397 ATKTISASTLHSNVDYNPYEGFEVTGWPVTTLSRGEVVVEDGEFRGKAGHGRFLKRKPFQ 456 (459)
T ss_pred cccccCHHHHhhcCCCCcccCcEEeeeEEEEEECCEEEEECCEEeccCCCceEeeCCCCC
Confidence 999999988999999999999988899999999999999999999877789999987554
|
|
| >cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-57 Score=469.66 Aligned_cols=445 Identities=54% Similarity=0.862 Sum_probs=381.8
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHH
Q 009282 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~ 134 (538)
++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+........++++++...+.+
T Consensus 1 lli~~~~v~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~viD~~g~~vlPGlID~H~H~~~~~~~~~~~e~~~~~~~~a 80 (447)
T cd01314 1 LIIKNGTIVTADGSFKADILIEDGKIVAIGPNLEAPGGVEVIDATGKYVLPGGIDPHTHLELPFMGTVTADDFESGTRAA 80 (447)
T ss_pred CEEECCEEECCCCceeeeEEEECCEEEEeeCCCCCCCCceEEECCCCEEecCEEeccccccccccCccCcchHHHHHHHH
Confidence 47999999998877789999999999999976433334689999999999999999999987633346788898899999
Q ss_pred HhCCcEEEecccCCCC-CCHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccC
Q 009282 135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (538)
Q Consensus 135 l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (538)
+++||||++||....+ ....+.++...... ....++++++........+.++++..+. +.|...+|+++.+++.+.+
T Consensus 81 ~~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~-~~g~~~ik~~~~~~~~~~~ 159 (447)
T cd01314 81 AAGGTTTIIDFAIPNKGQSLLEAVEKWRGKADGKSVIDYGFHMIITDWTDSVIEELPELV-KKGISSFKVFMAYKGLLMV 159 (447)
T ss_pred HhCCCcEEEeCCCCCCCCCHHHHHHHHHHHhcCCCcccEEEEEeecCCChHHHHHHHHHH-HcCCCEEEEEeccCCCCCC
Confidence 9999999999975433 34556666554433 2356666666554444455677777777 4788899999888777788
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc
Q 009282 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (538)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~ 292 (538)
+.+.++++++.|+++|.++++|+++........+.+...|......|...+|...+...+.+++.++...+.++++.|++
T Consensus 160 s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~~~~~H~s 239 (447)
T cd01314 160 DDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAIRLAELAGAPLYIVHVS 239 (447)
T ss_pred CHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999888777777776667788888888888999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCC
Q 009282 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (538)
Q Consensus 293 ~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~ 372 (538)
+....+.++.+++.|+.++++.++|++.++.+.+.... ..+..++++||+|...+++++++++++|+.+++|||+.|++
T Consensus 240 ~~~~~~~i~~~k~~g~~v~~~~~ph~l~~~~~~~~~~~-~~g~~~~~~pplr~~~~~~~l~~~l~~G~i~~igsDh~~~~ 318 (447)
T cd01314 240 SKEAADEIARARKKGLPVYGETCPQYLLLDDSDYWKDW-FEGAKYVCSPPLRPKEDQEALWDGLSSGTLQTVGSDHCPFN 318 (447)
T ss_pred CHHHHHHHHHHHHCCCeEEEecCchhheeCHHHhcccc-ccccceEECCCCCChHHHHHHHHHHhCCCeeEEECCCCCCC
Confidence 99888899999999999999999999999988764211 12467899999999999999999999999999999999999
Q ss_pred hhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCc
Q 009282 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 452 (538)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~ 452 (538)
...+++...+|+.+|+|++|+++.++.++.+++..+.++++++++++|.|||++||+.+++|+|++|+.|||||+|.+..
T Consensus 319 ~~~k~~~~~~~~~~~~G~~g~e~~l~~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~~~~G~l~~G~~AD~vi~d~~~~ 398 (447)
T cd01314 319 FAQKARGKDDFTKIPNGVPGVETRMPLLWSEGVAKGRITLEKFVELTSTNPAKIFGLYPRKGTIAVGSDADLVIWDPNAE 398 (447)
T ss_pred HHHhhcccCCHhhCCCCCchHhhhHHHHHHHHHHcCCCCHHHHHHHHhhHHHHHhCCCCCCCccCCCCcCCEEEEeCCcC
Confidence 98888765689999999999999999999888877789999999999999999999978899999999999999999999
Q ss_pred eeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCc
Q 009282 453 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSG 501 (538)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~ 501 (538)
+.++.+++.+...++||.|..+.++|..||++|++||++|+++..++.|
T Consensus 399 ~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~~~~~~~~~~~~g 447 (447)
T cd01314 399 KTISADTHHHNVDYNIFEGMKVKGWPVVTISRGKVVVEDGELVGEKGSG 447 (447)
T ss_pred EEecHHHhhccCCCCcccCeEEeeeEEEEEECCEEEEECCEEeccCCCC
Confidence 9999888888999999999998899999999999999999999876544
|
The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues. |
| >PLN02795 allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-56 Score=458.55 Aligned_cols=449 Identities=24% Similarity=0.321 Sum_probs=370.5
Q ss_pred cccccCcccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCC---CCceEEecCCCeeeccccccccccccccCCCC
Q 009282 46 QCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE 122 (538)
Q Consensus 46 ~~~~~~~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~---~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~ 122 (538)
.|...++.+++|+|++|+++++...++|+|+||+|++|++....+ ++.++||++|++|+|||||+|+|+... +..
T Consensus 37 ~~~~~~~~~~vi~~~~vv~~~~~~~~~v~i~dG~I~~I~~~~~~~~~~~~~~~ida~G~~v~PG~ID~H~H~~~~--~~~ 114 (505)
T PLN02795 37 RCSLLPWPHFVLYSKRVVTPAGVIPGAVEVEGGRIVSVTKEEEAPKSQKKPHVLDYGNAVVMPGLIDVHVHLNEP--GRT 114 (505)
T ss_pred ccccccccceEEECCEEEECCCeEEEEEEEECCEEEEecCccccccccCCCEEEECCCCEEecCEEecccCcCCC--Ccc
Confidence 343444569999999999987777899999999999999754321 256899999999999999999999775 455
Q ss_pred ChhhHHHHHHHHHhCCcEEEecccC--CCCCCHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcE
Q 009282 123 TIDDFFSGQAAALAGGTTMHIDFVI--PINGSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (538)
Q Consensus 123 ~~~~~~~~~~~~l~~GvTt~~d~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (538)
.++++....++++++||||++||.. .+.....+.++...+... ...++++++........+..+++.++. +.|+.+
T Consensus 115 ~~e~~~~~~~aa~~gGvTtv~dmp~~~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~l~~~~-~~G~~g 193 (505)
T PLN02795 115 EWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETLELKIEAAKGKLYVDVGFWGGLVPENAHNASVLEELL-DAGALG 193 (505)
T ss_pred chhHHHHHHHHHHcCCcEEEECCCCCCCCCCChHHHHHHHHHHhccCceeeeeceecccCcchhHHHHHHHHH-HCCCcE
Confidence 6788999999999999999999962 222245555555555543 356777766544333334556666665 678988
Q ss_pred EEEEeeeCCCc---cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHH
Q 009282 200 FKFFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (538)
Q Consensus 200 ik~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l 276 (538)
+|+|+.+++.. ..+.+.+.++++.++++|.++++|+++........ ....+...+..|...+|..+|...+.+++
T Consensus 194 ~k~f~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~--~~~~~~~~~~~~~~~rP~~aE~~ai~~~~ 271 (505)
T PLN02795 194 LKSFMCPSGINDFPMTTATHIKAALPVLAKYGRPLLVHAEVVSPVESDS--RLDADPRSYSTYLKSRPPSWEQEAIRQLL 271 (505)
T ss_pred EEEEecccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecCChhHhhhhh--hhhcCCcChhHhcccCCHHHHHHHHHHHH
Confidence 99987654433 56789999999999999999999999876443221 11233334445566789999999999999
Q ss_pred HHHHHc-------CCCEEEEeccCH-HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCccc
Q 009282 277 RLAEFV-------NTPLYVVHVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348 (538)
Q Consensus 277 ~~~~~~-------~~~~~~~h~~~~-~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~ 348 (538)
.++... +.++|+.|.++. ...+.++.+++.|+.|++++++||+.++++.+.. .+..++++||+|...+
T Consensus 272 ~la~~~~~~~~~~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~L~l~~~~~~~----~~~~~k~~PPLR~~~d 347 (505)
T PLN02795 272 EVAKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPD----GDTRYKCAPPIRDAAN 347 (505)
T ss_pred HHHHHhhhcccCCCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeChhhhcccHHHccC----CCCceEEcCCCCChHH
Confidence 999999 999999999998 8889999999999999999999999999887643 2478999999999999
Q ss_pred HHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 349 NKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 349 ~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
++.+|++++.|...+++|||.|++...|+.....|+.++.|++|++..++..+..++ .+++|++++++++|.|||+++|
T Consensus 348 ~~aL~~al~~G~Id~i~sDHap~~~~~K~~~~~~~~~a~~G~~gle~~l~~~~~~~~-~~~l~l~~~v~~~s~~pA~~~g 426 (505)
T PLN02795 348 RELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQFVLPATWTAGR-AYGLTLEQLARWWSERPAKLAG 426 (505)
T ss_pred HHHHHHHHhCCCceEEecCCCCCChHHhccCcCCHhhCCCCceeHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998876556799999999999999999986665 4559999999999999999999
Q ss_pred CCCCCcccccCCCccEEEEcCCCceeeccCc-ccCCCC-CCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeec
Q 009282 429 VYPRKGAILVGSDADIIIFNPNSSFEITARS-HHSRLD-TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 506 (538)
Q Consensus 429 ~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~ 506 (538)
+ +++|+|++|+.|||||+|.+..+.++... ..+... |+||+|+.+.++|.+|+++|++||++|+++ .+..|+++..
T Consensus 427 l-~~~G~l~~G~~ADlvi~d~~~~~~v~~~~~~~s~~~~~sp~~G~~l~g~v~~tiv~G~~v~~~g~~~-~~~~G~~~~~ 504 (505)
T PLN02795 427 L-DSKGAIAPGKDADIVVWDPEAEFVLDESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVFLEGKHA-KQACGSPILA 504 (505)
T ss_pred C-CCCCccCCCCccCEEEEcCCcceEECcchhhhhcCCCcCCCCCeEEEeEEEEEEECCEEEEECCeEc-CCCCCeEecC
Confidence 9 67899999999999999999999998764 567776 999999999999999999999999999998 4557888763
|
|
| >COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-55 Score=442.21 Aligned_cols=425 Identities=31% Similarity=0.502 Sum_probs=376.3
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (538)
+++|+|+++++++....++|+|+||+|++|+.......+.++||++|++|+|||||.|+|+..+ |....|++.++.++
T Consensus 2 ~~lIk~~~iv~~~~~~~~di~i~~g~I~~Ig~~l~~~~~~~iiD~~g~~v~PG~ID~HVH~rep--g~~~ke~~~tgs~A 79 (430)
T COG0044 2 DLLIKNARVVDPGEDEVADILIKDGKIAAIGKNLEPTSGAEIIDAKGLLVLPGLVDLHVHFREP--GFEHKETFETGSRA 79 (430)
T ss_pred cEEEeccEEEcCCCceEecEEEECCEEEEeccCCCCCCCCcEEECCCCEEccCeeEEEEecCCC--CcchhhhHHHHHHH
Confidence 5799999999996668999999999999999864433578999999999999999999999999 88999999999999
Q ss_pred HHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc
Q 009282 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (538)
Q Consensus 134 ~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (538)
++++||||++||....+. ...+.++....... ...+++.++...+..+......+.... ..++|.|.+..+ ..
T Consensus 80 Aa~GG~Ttv~dmPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~it~~~~~~~~~~~~~~----~~g~~~F~~~~~-~~ 154 (430)
T COG0044 80 AAAGGVTTVVDMPNTKPPIDTAEALEDKLERAKGKSVVDYAFYGGLTKGNLGKLELTERGV----EAGFKGFMDDST-GA 154 (430)
T ss_pred HHcCCceEEEECCCCCCCCCCHHHHHHHHHHhhccceeEEEEEEEEeccccchhhhhhhhh----ccceEEEecCCc-Cc
Confidence 999999999999755544 56677777776665 689999999988877654332222211 456677777644 55
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
.+.+.+++.++.+...|..+..|+++..... ......|......|...+|..+|...+.+.++++...|.++|++|.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~H~Ed~~~~~---~~~~~~g~~~~~~~~~~~p~~aE~~~iar~~~la~~~g~~vhi~Hi 231 (430)
T COG0044 155 LDDDVLEEALEYAAELGALILVHAEDDDLIA---EGVMNEGLRAPELGLAGRPPIAEASAIARDLELARATGARVHICHI 231 (430)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEecCChhHhh---hHHHhcCccchhhccCCCChHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 6899999999999999999999999886544 3345578777778888899999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 292 ~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
++....+.++..+..|++|++++++||+.++++.+.. .+..++++||+|..++++.+++.++.|..++++|||+|+
T Consensus 232 St~~sv~li~~ak~~g~~vt~EvtphHL~l~~~~~~~----~~~~~k~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPh 307 (430)
T COG0044 232 STKESVELIRAAKAEGIRVTAEVTPHHLLLDEEDIED----LGTLAKVNPPLRDEEDREALWEALKDGVIDVIASDHAPH 307 (430)
T ss_pred CCHHHHHHHHHHhhcCCceEEeecchheEccHhHhhc----cCcceEECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCC
Confidence 9999999999999999999999999999999988865 457899999999999999999999999999999999999
Q ss_pred ChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCC
Q 009282 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 451 (538)
Q Consensus 372 ~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~ 451 (538)
+..+|.. +|..+|+|+.|++..++..+. ++..+.+|+.+.+++.|.|||++||+.. .|.|++|+.|||+|+|.+.
T Consensus 308 t~eeK~~---~f~~ap~G~~glE~~lpl~l~-lv~~g~lsl~~~v~~~S~nPA~ifgl~~-~g~i~~G~~ADl~lvD~~~ 382 (430)
T COG0044 308 TLEEKRL---PFEEAPSGIPGLETALPLLLT-LVKKGRLSLERLVELLSTNPARIFGLPP-KGAIEEGADADLVLVDPDE 382 (430)
T ss_pred CHHHhcc---chhhCCCCCccHHHHHHHHHH-HHHcCCcCHHHHHHHHhhCHHHHhCCCC-CCcccCCCccCEEEEcCCC
Confidence 9999874 599999999999999999996 9999999999999999999999999955 7889999999999999999
Q ss_pred ceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeecc
Q 009282 452 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497 (538)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~ 497 (538)
.+.+..+.+.++..|+||+|..+.+.|.+|+++|++||++++....
T Consensus 383 ~~~i~~~~~~sk~~~sPf~G~~~~g~v~~Ti~rG~~v~~~~~~~~~ 428 (430)
T COG0044 383 EWTIRAEELYSKAKNSPFEGFELKGRVVATILRGKVVYEDGEVIAK 428 (430)
T ss_pred CeEEchhhhccccCCCCcCCCEEeeeEEEEEECCEEEEECCcEecC
Confidence 9999999999999999999999999999999999999999987654
|
|
| >PRK06189 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=447.56 Aligned_cols=442 Identities=27% Similarity=0.393 Sum_probs=372.2
Q ss_pred CcccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHH
Q 009282 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (538)
Q Consensus 51 ~~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~ 130 (538)
|+++++|+|++|+++++...++|+|+||+|++|++.... ++.++||++|++|+|||||+|+|+..+ +....+++...
T Consensus 1 ~~~~~~i~~~~v~~~~~~~~~~v~i~~G~I~~i~~~~~~-~~~~~iD~~g~~vlPG~ID~H~H~~~~--~~~~~~~~~~~ 77 (451)
T PRK06189 1 MMYDLIIRGGKVVTPEGVYRADIGIKNGKIAEIAPEISS-PAREIIDADGLYVFPGMIDVHVHFNEP--GRTHWEGFATG 77 (451)
T ss_pred CCccEEEECCEEEcCCCcEEEEEEEECCEEEEecCCCCC-CCCeEEECCCCEEecCEEEeeeccCCC--CCCCcccHHHH
Confidence 356799999999998877789999999999999876432 357899999999999999999999876 55567888888
Q ss_pred HHHHHhCCcEEEecccCCC--CCCHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeC
Q 009282 131 QAAALAGGTTMHIDFVIPI--NGSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK 207 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~ 207 (538)
.+.++++||||+++|.... .....+.+....+.. ....++++++..... +...++..+. +.|+..+|+|++..
T Consensus 78 ~~aa~~gGvTt~~~~p~~t~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~~~l~~l~-~~Gv~~~k~f~~~~ 153 (451)
T PRK06189 78 SAALAAGGCTTYFDMPLNSIPPTVTREALDAKAELARQKSAVDFALWGGLVP---GNLEHLRELA-EAGVIGFKAFMSNS 153 (451)
T ss_pred HHHHHhCCEEEEEECCCCCCCCCCcHHHHHHHHHHhCcCceEeEEEEecccc---cCHHHHHHHH-HcCCcEEEEEcccc
Confidence 9999999999999995211 122334444444443 346788887643332 2356677776 78999999987643
Q ss_pred C---CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCC
Q 009282 208 G---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284 (538)
Q Consensus 208 ~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 284 (538)
+ .+..+...+.+.++.+.+.+..+..|+++..........+...|......|...+|...|...+.+++.++++.+.
T Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~P~~~E~~~v~~~l~la~~~g~ 233 (451)
T PRK06189 154 GTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRHLTTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGC 233 (451)
T ss_pred CCCCcCcCCHHHHHHHHHHHHhcCCeEEEECCChHHHHHHHHHHHhcCCCChhHccccCCHHHHHHHHHHHHHHHHHhCC
Confidence 2 2345678889999999999999999999877655555555667777776777788999999999999999999999
Q ss_pred CEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEE
Q 009282 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLV 364 (538)
Q Consensus 285 ~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~l 364 (538)
++|+.|+++....+.++.+++.|..+++++++|+++++++.+.. .+..++++||+|...+++.++++++.|+.+++
T Consensus 234 ~~hi~HiSt~~~~~~i~~~k~~g~~vt~ev~ph~L~l~~~~~~~----~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~i 309 (451)
T PRK06189 234 PLHFVHISSGKAVALIAEAKKRGVDVSVETCPHYLLFTEEDFER----IGAVAKCAPPLRSRSQKEELWRGLLAGEIDMI 309 (451)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEeCHHHhhcCHhHhhC----cCCceEEeCCCCChhhHHHHHHHHhCCCceEE
Confidence 99999999999999999999999999999999999999887653 24678999999999999999999999999999
Q ss_pred eCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccE
Q 009282 365 GTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADI 444 (538)
Q Consensus 365 gtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADl 444 (538)
+|||.|++...|. ..+|+..+.|++|++..++..+..++..++++++++++++|.|||++||+ +++|+|++|+.|||
T Consensus 310 ~sDh~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~npA~~lgl-~~~G~l~~G~~ADl 386 (451)
T PRK06189 310 SSDHSPCPPELKE--GDDFFLVWGGISGGQSTLLVMLTEGYIERGIPLETIARLLATNPAKRFGL-PQKGRLEVGADADF 386 (451)
T ss_pred ECCCCCCCHHHcC--cCCcccCCCCceeHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhHHHHhCC-CCCCcccCCCcCCE
Confidence 9999999887664 13688899999999999999987777777899999999999999999999 66899999999999
Q ss_pred EEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 445 IIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 445 vvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
+|+|++..+.++++++.+...|+||+|..+.++|.+|+++|++||++|+++.. .+|+++++.
T Consensus 387 vi~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~tiv~G~~v~~~g~~~~~-~~G~~~~~~ 448 (451)
T PRK06189 387 VLVDLDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQCVYQDGEVFPP-PRGQLLRPS 448 (451)
T ss_pred EEEcCCCCEEECHHHhhhcCCCCCcCCcEEEeEEEEEEECCEEEEECCEEccC-CCCcEecCC
Confidence 99999999999988888888999999999999999999999999999998864 489999873
|
|
| >PRK08044 allantoinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=444.81 Aligned_cols=438 Identities=28% Similarity=0.404 Sum_probs=374.5
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
+++++|+|++|++.+....++|+|+||+|++|++... .+.++||++|++|+|||||.|+|+..+ +....+++....
T Consensus 2 ~~~~~i~n~~vi~~~~~~~~~i~I~dg~I~~i~~~~~--~~~~~iD~~G~~v~Pg~iD~h~h~~~~--~~~~~e~~~~~~ 77 (449)
T PRK08044 2 SFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLG--DAKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYETGT 77 (449)
T ss_pred CceEEEECcEEEcCCCCEEEEEEEECCEEEEecCCCC--CCCeEEECCCCEEcCCeeccccccCCC--CccccccHHHHH
Confidence 4578999999998766667899999999999987542 357899999999999999999999876 545578899999
Q ss_pred HHHHhCCcEEEecccC-C-CCCCHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCC
Q 009282 132 AAALAGGTTMHIDFVI-P-INGSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~-~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 208 (538)
+.+++.||||++|+.. . +.....+.++...+.. ....+++.++...... ...++..+. +.|+.++|.|+.+.+
T Consensus 78 ~aa~~gGvTtv~d~~~~~~p~~~~~~~~~~~~~~~~~~s~vd~~~~~~~~~~---~~~ei~~l~-~~gv~~fk~~~~~~~ 153 (449)
T PRK08044 78 RAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSY---NLDRLHELD-EVGVVGFKCFVATCG 153 (449)
T ss_pred HHHHhCCceEEECCccCCCCCCCcHHHHHHHHHHhccCCeeeEEEEeeeCCC---CHHHHHHHH-HcCceEEEEEecccC
Confidence 9999999999999962 2 1124556666555554 3467788777655432 356677766 679999999976532
Q ss_pred C-------ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHH
Q 009282 209 S-------FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281 (538)
Q Consensus 209 ~-------~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 281 (538)
. ...+...+.+.++.+.+.|.++.+|+++........+.....|...+..|...+|...|...+.+++.+++.
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~G~~~~~~~~~~~P~~~E~~~v~r~~~lA~~ 233 (449)
T PRK08044 154 DRGIDNDFRDVNDWQFYKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKV 233 (449)
T ss_pred cccccCCccCcCHHHHHHHHHHHHhcCCEEEEecCCHHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHH
Confidence 1 234677888888989999999999999987665544555677877888888889999999999999999999
Q ss_pred cCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCc
Q 009282 282 VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL 361 (538)
Q Consensus 282 ~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~ 361 (538)
.|.++|+.|++.....+.+..+++.|..++++.++|++.++++.+.. .+..++++||+|...+++++|+++..|..
T Consensus 234 ~g~~vhi~HiSt~~~~~~i~~ak~~G~~it~e~~~h~L~l~~~~~~~----~~~~~k~~PPlr~~~d~~aL~~~l~~G~i 309 (449)
T PRK08044 234 AGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEE----IGTLAKCSPPIRDLENQKGMWEKLFNGEI 309 (449)
T ss_pred hCCCEEEEeCCCHHHHHHHHHHHHCCCCEEEEcChhhhcccHHHhhC----CCCcEEEcCCCCChHHHHHHHHHHhCCCc
Confidence 99999999999988889999999999999999999999999988753 25788999999999999999999999999
Q ss_pred eEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCC
Q 009282 362 QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 441 (538)
Q Consensus 362 ~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ 441 (538)
++++|||.|++...|. .+|+.+|.|++|++..++..+..++..++++++++++++|.|||++||+ ++.|+|++|+.
T Consensus 310 d~i~sDH~P~~~~~K~---~~~~~~~~g~~g~e~~l~~~~~~~v~~~~l~~~~~v~~~s~npA~~lgl-~~~G~i~~G~~ 385 (449)
T PRK08044 310 DCLVSDHSPCPPEMKA---GNIMEAWGGIAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGKD 385 (449)
T ss_pred eEEEcCCCCCChHHcc---CChhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCC-CCCCcCCCCCc
Confidence 9999999999877765 3788999999999999999998888888899999999999999999999 45799999999
Q ss_pred ccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEee
Q 009282 442 ADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 505 (538)
Q Consensus 442 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~ 505 (538)
|||+++|.+..|.++++++.++..|+||+|+.+.++|..||++|++||++++.+..++.|++++
T Consensus 386 ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~~G~~v~~~~~~~~~~~~G~~~~ 449 (449)
T PRK08044 386 ADFVFIQPNSSYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFIL 449 (449)
T ss_pred cCEEEECCCCcEEECHHHccccCCCCCCCCCEEeeeEEEEEECCEEEEECCccccCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999998766666788764
|
|
| >TIGR03178 allantoinase allantoinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-54 Score=441.77 Aligned_cols=436 Identities=30% Similarity=0.455 Sum_probs=370.3
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (538)
+++|+|++|+++++...++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+..+ +...++++....++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~i~dg~I~~i~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~ 77 (443)
T TIGR03178 1 DLIIRGGRVILPNGEREADVGVKGGKIAAIGPDIL-GPAAKIIDAGGLVVFPGVVDTHVHINEP--GRTEWEGFETGTRA 77 (443)
T ss_pred CEEEECcEEECCCCceEEEEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeccEeccccccCCC--CccccchHHHHHHH
Confidence 47899999999887778999999999999987532 3457899999999999999999999875 55567888888999
Q ss_pred HHhCCcEEEeccc-CC-CCCCHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCC-
Q 009282 134 ALAGGTTMHIDFV-IP-INGSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS- 209 (538)
Q Consensus 134 ~l~~GvTt~~d~~-~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~- 209 (538)
++++||||++||. .. +.....+.++...+... ...++++++.... .+..+++..+. +.|+..+|+|+++.+.
T Consensus 78 ~~~gGvTtv~dmp~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~i~~~~-~~G~~~ik~~~~~~~~~ 153 (443)
T TIGR03178 78 AAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAVDVGFWGGLV---PYNLDDLRELD-EAGVVGFKAFLSPSGDD 153 (443)
T ss_pred HHcCCeEEEEECCCCCCCCCCcHHHHHHHHHHhccCCceeEEEEeccC---CCCHHHHHHHH-HCCCcEEEEEecccCCC
Confidence 9999999999996 22 12234455555555443 3567777664433 23456666766 7899999999875432
Q ss_pred --ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEE
Q 009282 210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (538)
Q Consensus 210 --~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 287 (538)
...+.+.+.++++.++++|+++.+|+++........+.+...|......|...+|...+...+.+++++++..+.++|
T Consensus 154 ~~~~~~~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ae~~~~~~~~~la~~~g~~vh 233 (443)
T TIGR03178 154 EFPHVDDWQLYKGMRELARLGQLLLVHAENPAITSALGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVTGCRVH 233 (443)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEeccChHHHHHHHHHHHhcCCCChhHhcCcCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 356789999999999999999999998887776666677788888888888889999999999999999999999999
Q ss_pred EEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCC
Q 009282 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (538)
Q Consensus 288 ~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD 367 (538)
+.|.++....+.++.+++.|+.++++.++|++.++.+.+.. .+..++++||+|...+++.++++++.|..++++||
T Consensus 234 i~Hiss~~~~~~i~~~~~~g~~it~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~SD 309 (443)
T TIGR03178 234 VVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPD----GGTLAKCAPPIRDLANQEGLWEALLNGLIDCVVSD 309 (443)
T ss_pred EEeCCCHHHHHHHHHHHHCCCcEEEEECccceEecHHHhhC----cCcceEEcCCCCChHHHHHHHHHHHcCCccEEeCC
Confidence 99999988889999999999999999999999998887643 24678999999999999999999999999999999
Q ss_pred CCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEE
Q 009282 368 HCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIF 447 (538)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvl 447 (538)
|.|++...|. ..+|+.++.|++|++..++..+..++..++++++++++++|.|||+++|+ ++.|+|++|+.|||||+
T Consensus 310 h~p~~~~~K~--~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~pA~~~g~-~~~G~l~~G~~Ad~vi~ 386 (443)
T TIGR03178 310 HSPCTPDLKR--AGDFFKAWGGIAGLQSTLDVMFDEAVQKRGLPLEDIARLMATNPAKRFGL-AQKGRIAPGKDADFVFV 386 (443)
T ss_pred CCCCChHHcC--cCChhhCCCCeeEHHHhHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHcCC-CCCCccCCCCcCCEEEE
Confidence 9999876653 24788899999999999998887777788899999999999999999999 66799999999999999
Q ss_pred cCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEe
Q 009282 448 NPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 504 (538)
Q Consensus 448 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~ 504 (538)
|.+..+.+++..+.+...|+||+|..+.++|..||++|++||++|+++... .|+++
T Consensus 387 d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~-~g~~~ 442 (443)
T TIGR03178 387 DPDESYTLTPDDLYYRHKVSPYVGRTIGGRVRATYLRGQCIYDDEQFIGAP-KGQLL 442 (443)
T ss_pred cCCCcEEEcHHHhhhcCCCCCcCCcEEeeEEEEEEECCEEEEECCeeccCC-CCccc
Confidence 998899998888888889999999999999999999999999999998765 77764
|
This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. |
| >cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-53 Score=441.66 Aligned_cols=441 Identities=30% Similarity=0.429 Sum_probs=371.5
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (538)
|++|+|++|+++++..+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+... +...++++....++
T Consensus 1 dl~i~~~~v~~~~~~~~~~v~I~~g~I~~i~~~~~~~~~~~~iDa~G~~v~PG~ID~H~H~~~~--~~~~~e~~~~~s~a 78 (447)
T cd01315 1 DLVIKNGRVVTPDGVREADIAVKGGKIAAIGPDIANTEAEEVIDAGGLVVMPGLIDTHVHINEP--GRTEWEGFETGTKA 78 (447)
T ss_pred CEEEECCEEECCCCceEeEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEeccEeeceeccCCC--CccccccHHHHHHH
Confidence 4799999999987777899999999999999865434468999999999999999999999865 44567788888999
Q ss_pred HHhCCcEEEecccCC--CCCCHHHHHHHHHHHhcc-cceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCC-
Q 009282 134 ALAGGTTMHIDFVIP--INGSLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS- 209 (538)
Q Consensus 134 ~l~~GvTt~~d~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~- 209 (538)
++++||||+++|... +.....+.++...+.... ..++++++...... ..+++.++. +.|+.++|+++.+++.
T Consensus 79 al~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~ei~~l~-~~G~~giKv~~~~~~~~ 154 (447)
T cd01315 79 AAAGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPG---NLDQLRPLD-EAGVVGFKCFLCPSGVD 154 (447)
T ss_pred HHhCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCC---CHHHHHHHH-HcCCcEEEEEecccCCC
Confidence 999999999999621 122345555555555433 56777765543322 355566666 6799999998765432
Q ss_pred --ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEE
Q 009282 210 --FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (538)
Q Consensus 210 --~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 287 (538)
...+.+.+.++++.++++|+++.+|+++..............|......+...+|...+...+.+++.++++.+.++|
T Consensus 155 ~~~~~~~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~ih 234 (447)
T cd01315 155 EFPAVDDEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRLH 234 (447)
T ss_pred CcccCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 235788999999999999999999999887666666666666766666677778999999999999999999999999
Q ss_pred EEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCC
Q 009282 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTD 367 (538)
Q Consensus 288 ~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD 367 (538)
+.|.+.....+.++.++..|..++++.++|++.++.+.+.. .+..++++||+|...+++.++++++.|..++++||
T Consensus 235 i~h~s~~~~~~~i~~~~~~g~~i~~e~~~h~l~~~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~g~i~~i~SD 310 (447)
T cd01315 235 IVHLSSAEAVPLIREARAEGVDVTVETCPHYLTFTAEDVPD----GGTEFKCAPPIRDAANQEQLWEALENGDIDMVVSD 310 (447)
T ss_pred EEeCCCHHHHHHHHHHHHCCCceEEEeccccEEEcHHHccC----CCCceEECCCCCChHHHHHHHHHHhCCceeEEeCC
Confidence 99999998889999999999999999999999999887753 34788999999999999999999999999999999
Q ss_pred CCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEE
Q 009282 368 HCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIF 447 (538)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvl 447 (538)
|.|++...|..+..+|+.++.|+++++..++..+..++..++++++++++++|.|||+++|+++++|+|++|+.|||||+
T Consensus 311 h~p~~~~~k~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~pa~~~g~~~~~G~l~~g~~Ad~~v~ 390 (447)
T cd01315 311 HSPCTPELKLLGKGDFFKAWGGISGLQLGLPVMLTEAVNKRGLSLEDIARLMCENPAKLFGLSHQKGRIAVGYDADFVVW 390 (447)
T ss_pred CCCCCHHHhccCCCChhhCCCCeeEHHHhHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCccccCCCCCCEEEE
Confidence 99998777754445788899999999999998887777788899999999999999999999767899999999999999
Q ss_pred cCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEee
Q 009282 448 NPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 505 (538)
Q Consensus 448 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~ 505 (538)
|.+..+.++.+.+.+...++||.|....++|.+||++|++||++|+++... .|++++
T Consensus 391 d~~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~ti~~G~~v~~~~~~~~~~-~G~~~~ 447 (447)
T cd01315 391 DPEEEFTVDAEDLYYKNKISPYVGRTLKGRVHATILRGTVVYQDGEVVGEP-LGQLLL 447 (447)
T ss_pred cCCCCEEEcHHHccccCCCCCccCeEEeeeEEEEEECCEEEEECCeEccCC-CceEeC
Confidence 999888888878888888999999999999999999999999999999766 888874
|
But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid. |
| >PRK07627 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=434.47 Aligned_cols=418 Identities=21% Similarity=0.275 Sum_probs=340.4
Q ss_pred cEEEECcEEEcCCCc--eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~--~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
+++|+|++|+++.+. .+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+ +....+++.+..
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~~iDa~g~~vlPG~iD~H~H~~~~--g~~~~e~~~t~s 79 (425)
T PRK07627 2 KIHIKGGRLIDPAAGTDRQADLYVAAGKIAAIGQAPAGFNADKTIDASGLIVCPGLVDLSARLREP--GYEYKATLESEM 79 (425)
T ss_pred eEEEEeeEEECCCCCccceeEEEEECCEEEEecCCCcCCCCCeEEECCCCEEeccEEeccccccCC--CccccCcHHHHH
Confidence 589999999987643 5789999999999998754323467899999999999999999999776 556778889999
Q ss_pred HHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeec-CChhhHHHHHHHHHHcCCcEEEEEeeeCC
Q 009282 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 208 (538)
++++++||||++++...... .....++....... .....+..+..... .+.+.+.++..+. +.|+..+|.+ +
T Consensus 80 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~l~-~~G~~~fk~~----~ 154 (425)
T PRK07627 80 AAAVAGGVTSLVCPPDTDPVLDEPGLVEMLKFRARNLNQAHVYPLGALTVGLKGEVLTEMVELT-EAGCVGFSQA----N 154 (425)
T ss_pred HHHHhCCeeEEEeCCCCCCCCCCHHHHHHHHHHhhccCceeEEEeCeEEcCCCccCHHHHHHHH-hCCEEEEEcC----C
Confidence 99999999999998643322 23333433333322 23344333333322 3445677788876 6788888853 2
Q ss_pred CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEE
Q 009282 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (538)
Q Consensus 209 ~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 288 (538)
.+..+...+.+.++.+++.|..+.+|+++...... .....|......+...+|..+|..++.+++.+++..+.++|+
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~~~~~---~~~~~g~~~~~~~~~~~P~~aE~~av~r~~~la~~~~~~~hi 231 (425)
T PRK07627 155 VPVVDTQVLLRALQYASTFGFTVWLRPLDAFLGRG---GVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHL 231 (425)
T ss_pred cccCCHHHHHHHHHHHHhcCCEEEEecCChhhhhC---CCcCCCHhHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEE
Confidence 23457888999999999999999999998643221 111112222333455689999999999999999999999999
Q ss_pred EeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCC
Q 009282 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (538)
Q Consensus 289 ~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~ 368 (538)
.|+++...++.++..++.|+.|++++++|||.++++.+.. .+..++++||+|..++++.+|++++.|..++++|||
T Consensus 232 ~HvSs~~~~~~i~~ak~~g~~vt~Ev~ph~L~l~~~~~~~----~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~SDH 307 (425)
T PRK07627 232 ARLSSAAGVALVRAAKAEGLPVTCDVGVNHVHLIDVDIGY----FDSQFRLDPPLRSQRDREAIRAALADGTIDAICSDH 307 (425)
T ss_pred EeCCCHHHHHHHHHHHHCCCCeEEEeccchheEeHhHHhc----cCCceEEeCCCCCHHHHHHHHHHHhcCCCcEEEcCC
Confidence 9999999999999999999999999999999999887743 246899999999999999999999999999999999
Q ss_pred CCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEc
Q 009282 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 448 (538)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld 448 (538)
.|++...+. .+|+.++.|++|++..++..+... ..++++++++++++|.|||+++|+ +.|+|++|+.||||++|
T Consensus 308 aP~~~~~k~---~~~~~~~~G~~g~e~~~pl~~~~~-~~~~i~~~~~l~~~t~~pA~~lg~--~~G~l~~G~~ADlvv~d 381 (425)
T PRK07627 308 TPVDDDEKL---LPFAEATPGATGLELLLPLTLKWA-DEAKVPLARALARITSAPARVLGL--PAGRLAEGAPADLCVFD 381 (425)
T ss_pred CCCCHHHcc---CCHhhCCCCceeHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHhCC--CCCcccCCCcCCEEEEC
Confidence 999877664 389999999999999888777444 456799999999999999999999 46999999999999999
Q ss_pred CCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 449 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
.+..+.++++++.+...|+||+|....++|..||++|++||++
T Consensus 382 ~~~~~~v~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~ 424 (425)
T PRK07627 382 PDAHWRVEPRALKSQGKNTPFLGYELPGRVRATLVAGQVAFER 424 (425)
T ss_pred CCCcEEEChhhccccCCCCCCcCCEeeeEEEEEEECCEEEeec
Confidence 9999999999999999999999999999999999999999986
|
|
| >PRK07369 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-53 Score=427.77 Aligned_cols=411 Identities=24% Similarity=0.351 Sum_probs=349.3
Q ss_pred ccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCC-CCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 53 SKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~-~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
.+++|+|++|+++.+ ...++|+|+||+|++|+++... +.+.++||++|++|+|||||+|+|+..+ +....+++.+
T Consensus 2 ~~~~i~n~~v~d~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~~iDa~G~~vlPG~ID~H~H~~~~--~~~~~e~~~s 79 (418)
T PRK07369 2 SNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHIDPIPPDTQIIDASGLILGPGLVDLYSHSGEP--GFEERETLAS 79 (418)
T ss_pred CCEEEeCeEEECCCCCcccceeEEEECCEEEEecCCcccCCCCCEEEECCCCEEecCEEecccccCCC--CcCCCccHHH
Confidence 468999999998653 2678999999999999876432 3467899999999999999999999876 6667899999
Q ss_pred HHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCC-hhhHHHHHHHHHHcCCcEEEEEeee
Q 009282 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAY 206 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (538)
..++++++||||+++|....+. ...+.++...+... ...+++.++....... ++.+.++..+. +.|+..+|.
T Consensus 80 ~~~aa~~GGvTtv~~~pn~~P~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~~ei~~l~-~~Gv~~f~~---- 154 (418)
T PRK07369 80 LAAAAAAGGFTRVAILPDTFPPLDNPATLARLQQQAQQIPPVQLHFWGALTLGGQGKQLTELAELA-AAGVVGFTD---- 154 (418)
T ss_pred HHHHHHhCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCceeEEEEEEEeeCCCCccHhhHHHHH-HCCCEEEEC----
Confidence 9999999999999999754333 45566666655553 4678888887776543 34577777776 678887762
Q ss_pred CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCE
Q 009282 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (538)
Q Consensus 207 ~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 286 (538)
+....+...+.+.++.+++.|.++.+|+++....... +...|......|...+|..+|..++.+++.+++..+.++
T Consensus 155 -~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~av~r~~~la~~~~~~~ 230 (418)
T PRK07369 155 -GQPLENLALLRRLLEYLKPLGKPVALWPCDRSLAGNG---VMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPV 230 (418)
T ss_pred -CCcCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhcC---cccCChhHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcE
Confidence 2233467788899999999999999999987653322 223344444455667899999999999999999999999
Q ss_pred EEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeC
Q 009282 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (538)
Q Consensus 287 ~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgt 366 (538)
|+.|+++...++.++.+++.|+.|++++++||+.++++.+.. .+..++++||+|...+++++|++++.|...+++|
T Consensus 231 hi~HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~l~~~~~~~----~~~~~kv~PPLR~~~d~~aL~~~l~~G~Id~i~S 306 (418)
T PRK07369 231 HLMRISTARSVELIAQAKARGLPITASTTWMHLLLDTEALAS----YDPNLRLDPPLGNPSDRQALIEGVRTGVIDAIAI 306 (418)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCeEEEecHHHHhccHHHHhc----cCCCcEECCCCCCHHHHHHHHHHHhcCCCCEEEc
Confidence 999999999999999999999999999999999999987753 2367899999999999999999999999999999
Q ss_pred CCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEE
Q 009282 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 446 (538)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvv 446 (538)
||+|++..+|.. +|+.+++|++|++..++..++.++..++++++++++++|.|||++||+. .|+|++|+.|||++
T Consensus 307 DHaP~~~~~K~~---~~~~~~~G~~G~e~~l~~~~~~~v~~~~i~l~~~v~~~s~nPA~~lgl~--~G~i~~G~~ADlvi 381 (418)
T PRK07369 307 DHAPYTYEEKTV---AFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQALSTNPARCLGQE--PPSLAPGQPAELIL 381 (418)
T ss_pred CCCCCCHHHccC---CHhHCCCCceeHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhHHHHhCCC--cCcccCCCcCCEEE
Confidence 999999888763 7999999999999999999988888888999999999999999999994 49999999999999
Q ss_pred EcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEE
Q 009282 447 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 483 (538)
Q Consensus 447 ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v 483 (538)
+|.+..|.++.+++.+...|+||+|+.+.++|..||+
T Consensus 382 ~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t~~ 418 (418)
T PRK07369 382 FDPQKTWTVSAQTLHSLSRNTPWLGQTLKGRVLQTWV 418 (418)
T ss_pred EcCCCCEEECcccccCCCCCCCCCCCEeeeEEEEEEC
Confidence 9999999999999999999999999999999999985
|
|
| >PRK09236 dihydroorotase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=424.53 Aligned_cols=436 Identities=25% Similarity=0.360 Sum_probs=354.5
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHH
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~ 132 (538)
++++|+|++|++.+....++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+ +....+.+....+
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~ 79 (444)
T PRK09236 2 KRILIKNARIVNEGKIFEGDVLIENGRIAKIASSISAKSADTVIDAAGRYLLPGMIDDQVHFREP--GLTHKGDIASESR 79 (444)
T ss_pred ccEEEECCEEEcCCCceEeEEEEECCEEEEecCCCCCCCCCeEEECCCCEECCCEEEcccccccC--cccccccHHHHHH
Confidence 46899999999977666789999999999998764333457899999999999999999998765 4445577888899
Q ss_pred HHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeC-CC
Q 009282 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GS 209 (538)
Q Consensus 133 ~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-~~ 209 (538)
.++++||||++||+...+. ...+.+....+.. ....++++++.+.. .+...++..+. +.|..++|+|.... +.
T Consensus 80 aa~~~GvTtv~d~p~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~e~~~l~-~~g~~g~k~~~~~~~~~ 155 (444)
T PRK09236 80 AAVAGGITSFMEMPNTNPPTTTLEALEAKYQIAAQRSLANYSFYFGAT---NDNLDEIKRLD-PKRVCGVKVFMGASTGN 155 (444)
T ss_pred HHHhCCcEEEEeCCCCCCCcCcHHHHHHHHHHhccCeEEEEEEEeccC---cccHHHHHHHH-HccCcEEEEEeccCCCC
Confidence 9999999999999743322 3344454444443 34577887776433 22356666666 67889999987532 22
Q ss_pred c-cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHc-CCC-CcccccccCCchHHHHHHHHHHHHHHHcCCCE
Q 009282 210 F-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL-GIT-GPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (538)
Q Consensus 210 ~-~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 286 (538)
. ..+.+.++++++ ..+.++..|+++...+......+... |.. ....|...+|...+..++.+++.+++..+.++
T Consensus 156 ~~~~~~~~~~~~~~---~~~~~v~~H~e~~~~~~~~~~~~~~~~g~~~~~~~~~~~rp~~ae~~av~~~~~la~~~~~~~ 232 (444)
T PRK09236 156 MLVDNPETLERIFR---DAPTLIATHCEDTPTIKANLAKYKEKYGDDIPAEMHPLIRSAEACYKSSSLAVSLAKKHGTRL 232 (444)
T ss_pred cccCcHHHHHHHHH---hcCCEEEEecCCHHHHHHHHHHHHHhcCCCCChhhccccCCHHHHHHHHHHHHHHHHHHCCCE
Confidence 2 233455566654 45899999998876655444333332 532 44566667899999999999999999999999
Q ss_pred EEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeC
Q 009282 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (538)
Q Consensus 287 ~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgt 366 (538)
|+.|+++....+.++..+..|..++++.++|+++++++.+.. .+..++++||+|...+++++++++++|+.+++||
T Consensus 233 hi~h~st~~~~~~i~~~~~~g~~vt~e~~~H~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~igt 308 (444)
T PRK09236 233 HVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDDSDYAR----LGNLIKCNPAIKTASDREALRQALADDRIDVIAT 308 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHCCCCEEEEEchhhhhcCHHHHhc----cCceEEECCCCCCHHHHHHHHHHHhCCCCcEEEC
Confidence 999999988888888888889999999999999999987753 2578899999999999999999999999999999
Q ss_pred CCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEE
Q 009282 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 446 (538)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvv 446 (538)
||.|.....+.. +|+.++.|+++++..++..++ .+..+++|++++++++|.|||++||+ ++.|+|++|+.||||+
T Consensus 309 Dh~p~~~~~k~~---~~~~~~~G~~~~e~~l~~l~~-~v~~~~~~~~~~~~~~t~~pA~~lgl-~~~G~l~~G~~ADlvi 383 (444)
T PRK09236 309 DHAPHTWEEKQG---PYFQAPSGLPLVQHALPALLE-LVHEGKLSLEKVVEKTSHAPAILFDI-KERGFIREGYWADLVL 383 (444)
T ss_pred CCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH-HHHhcCCCHHHHHHHHHHhHHHhcCC-CCCCccccCCcCCEEE
Confidence 999987776653 788899999999988888884 56667799999999999999999999 4579999999999999
Q ss_pred EcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 447 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 447 ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
+|++.++.++..++.+...|+||+|....++|.+||++|++||++|+++... .|+++++.
T Consensus 384 ~d~~~~~~~~~~~~~s~~~~sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~-~G~~~~~~ 443 (444)
T PRK09236 384 VDLNSPWTVTKENILYKCGWSPFEGRTFRSRVATTFVNGQLVYHNGQLVESC-RGQRLEFD 443 (444)
T ss_pred EcCCCCEEEchHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEECCEEccCc-CceEeecC
Confidence 9999999999888899999999999999999999999999999999999766 89999854
|
|
| >PRK09059 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=426.34 Aligned_cols=419 Identities=22% Similarity=0.325 Sum_probs=348.3
Q ss_pred cccEEEECcEEEcCCCc--eeeeEEEeCCEEEEecCCCC---CCCCceEEecCCCeeeccccccccccccccCCCCChhh
Q 009282 52 SSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNIN---VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD 126 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~--~~~~V~I~~grI~~Vg~~~~---~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~ 126 (538)
+.+++|+|++|+++++. .+++|+|+||+|++|++... .+.+.++||++|++|+|||||+|+|+..+ +....+.
T Consensus 2 ~~~~~i~n~~v~~~~~~~~~~~~v~I~~G~I~~i~~~~~~~~~~~~~~viDa~G~~v~PG~ID~HvH~~~~--~~~~~e~ 79 (429)
T PRK09059 2 MRPILLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDARVFVGEP--GAEHRET 79 (429)
T ss_pred CcCEEEEeeEEECCCCCcccceEEEEECCEEEEecCccccccCCCCCeEEECCCCEEeccEEecccccCCC--Cchhhhh
Confidence 56799999999997764 47899999999999987532 23457899999999999999999999765 5556788
Q ss_pred HHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc-cceeeeeeeeeecC-ChhhHHHHHHHHHHcCCcEEEEE
Q 009282 127 FFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVSDEMEVMVKEKGINSFKFF 203 (538)
Q Consensus 127 ~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~ik~~ 203 (538)
+....++++++||||+++|....+. ...+.++........ ..+++.++...... .++.+.++..+. +.|+..++..
T Consensus 80 ~~~~s~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~~f~~~ 158 (429)
T PRK09059 80 IASASRAAAAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAGEEMTEFGLLR-AAGAVAFTDG 158 (429)
T ss_pred HHHHHHHHHhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCCcchHHHHHHH-hcCcEEEecC
Confidence 8888999999999999999654332 445556665555543 57788877766554 445577777776 6677766521
Q ss_pred eeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcC
Q 009282 204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283 (538)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 283 (538)
+....+...+.++++.+++.|.++.+|+++........ ...|......|...+|..+|..++.+++.++...+
T Consensus 159 ----~~~~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~---~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~ 231 (429)
T PRK09059 159 ----RRSVANTQVMRRALTYARDFDAVIVHETRDPDLGGNGV---MNEGLFASWLGLSGIPREAEVIPLERDLRLAALTR 231 (429)
T ss_pred ----CcccCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCC---cCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 22334667788999999999999999999876432100 11111112234456899999999999999999999
Q ss_pred CCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceE
Q 009282 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQL 363 (538)
Q Consensus 284 ~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~ 363 (538)
.++|+.|+++....+.++.+++.|+.|++++++|||.++++.+.. .+..++++||+|..++++.++++++.|...+
T Consensus 232 ~~~hi~hvs~~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~----~~~~~kvnPPLR~~~d~~~L~~~l~~g~id~ 307 (429)
T PRK09059 232 GRYHAAQISCAESAEALRRAKDRGLKVTAGVSINHLSLNENDIGE----YRTFFKLSPPLRTEDDRVAMVEAVASGTIDI 307 (429)
T ss_pred CcEEEEecCCHHHHHHHHHHHHCCCCEEEeecHHHHhccHHHHhc----cCCccEEcCCCCCHHHHHHHHHHHHcCCCcE
Confidence 999999999999999999999999999999999999999887643 2467899999999999999999999999999
Q ss_pred EeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCcc
Q 009282 364 VGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDAD 443 (538)
Q Consensus 364 lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~AD 443 (538)
++|||.|++...|.. +|+..++|++|++..++..+ .++..+++++++++++.|.|||++||+ + .|+|++|+.||
T Consensus 308 i~sDh~p~~~~~K~~---~~~~~~~G~~gle~~l~~~~-~~v~~~~l~l~~~~~~~s~nPA~~~gl-~-~G~l~~G~~AD 381 (429)
T PRK09059 308 IVSSHDPQDVDTKRL---PFSEAAAGAIGLETLLAAAL-RLYHNGEVPLLRLIEALSTRPAEIFGL-P-AGTLKPGAPAD 381 (429)
T ss_pred EEeCCCCCCHHHCcC---ChhhCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHHHHHHhCC-C-cCcccCCCcCC
Confidence 999999999888753 79999999999999999888 467788899999999999999999999 4 59999999999
Q ss_pred EEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE
Q 009282 444 IIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 444 lvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
||++|.+..|.++.+.+.+...|+||+|+.+.++|..||++|++||+
T Consensus 382 lvl~d~~~~~~v~~~~~~s~~~~sPf~G~~l~G~v~~ti~~G~~v~~ 428 (429)
T PRK09059 382 IIVIDLDEPWVVDPEDLKSRSKNTPFEEARFQGRVVRTIVAGKTVYE 428 (429)
T ss_pred EEEECCCCCEEECcccCccCCCCCCCCCCEEeeEEEEEEECCEEEee
Confidence 99999999999999999999999999999999999999999999985
|
|
| >PRK07575 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=421.10 Aligned_cols=430 Identities=25% Similarity=0.385 Sum_probs=343.6
Q ss_pred cccEEEECcEEEcCCC-ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHH
Q 009282 52 SSKILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~-~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~ 130 (538)
+++++|+|++|+++++ ...++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+... +..+.+++...
T Consensus 2 ~~~~~i~~~~i~~~~~~~~~~~I~I~dg~I~~ig~~~~~~~~~~vid~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~~ 79 (438)
T PRK07575 2 MMSLLIRNARILLPSGELLLGDVLVEDGKIVAIAPEISATAVDTVIDAEGLTLLPGVIDPQVHFREP--GLEHKEDLFTA 79 (438)
T ss_pred cceEEEECCEEECCCCCEEeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEcccEEEeeeccCCC--CCcCcchHHHH
Confidence 5678999999998765 46789999999999999754333236899999999999999999998765 56688999999
Q ss_pred HHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCC
Q 009282 131 QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 208 (538)
.+.++++||||++||....+. ...+.+....... ....++++++..... +.+.++.. ..+..++|.|.....
T Consensus 80 ~~aa~~gGvTt~~dmp~~~p~~~~~~~~~~~~~~a~~~~~v~~~~~~~~~~---~~l~~l~~---~~~~~g~~~f~~~~~ 153 (438)
T PRK07575 80 SRACAKGGVTSFLEMPNTKPLTTTQAALDDKLARAAEKCVVNYGFFIGATP---DNLPELLT---ANPTCGIKIFMGSSH 153 (438)
T ss_pred HHHHHhCCEEEEEECCCCCCCCCcHHHHHHHHHHhccCcEEEEEEEccccc---cCHHHHHH---hhCCeEEEEEEeeCC
Confidence 999999999999999643322 3344444433333 456788888765542 22333332 236778888764211
Q ss_pred -Cc-cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCE
Q 009282 209 -SF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (538)
Q Consensus 209 -~~-~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 286 (538)
.. ..+...+++.+ ...+.++..|+++........ ....|...+..|...+|...|.+.+.+++.+++..+.++
T Consensus 154 ~~~~~~~~~~~~~~~---~~~~~~v~~h~e~~~l~~~~~--~~~~g~~~~~~~~~~~p~~aE~~av~~~~~la~~~g~~l 228 (438)
T PRK07575 154 GPLLVDEEAALERIF---AEGTRLIAVHAEDQARIRARR--AEFAGISDPADHSQIQDEEAALLATRLALKLSKKYQRRL 228 (438)
T ss_pred CCcccCcHHHHHHHH---HhCCCEEEEeCcChHHHHhhh--HhhccCcCcccccccCcHHHHHHHHHHHHHHHHHHCCCE
Confidence 11 12334444433 356899999998876432221 222344455566667899999999999999999999999
Q ss_pred EEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeC
Q 009282 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (538)
Q Consensus 287 ~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgt 366 (538)
|+.|+++....+.++..+ +..++++.++||++++++.+.. .+..++++||+|...+++++++++++|+.++++|
T Consensus 229 hi~HiSt~~~v~~i~~~k--~~~vt~ev~phhL~l~~~~~~~----~~~~~k~~PPLR~~~d~~~L~~~l~~G~id~i~s 302 (438)
T PRK07575 229 HILHLSTAIEAELLRQDK--PSWVTAEVTPQHLLLNTDAYER----IGTLAQMNPPLRSPEDNEALWQALRDGVIDFIAT 302 (438)
T ss_pred EEEECCCHHHHHHHHHhc--CCCEEEEEchhhheeCHHHHhC----CCceEEEeCCCCCHHHHHHHHHHHhCCCCCEEec
Confidence 999999988777776544 4789999999999999987653 2467899999999999999999999999999999
Q ss_pred CCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEE
Q 009282 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 446 (538)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvv 446 (538)
||.|++...|.. +|+..|.|++|++..++.+++.. ..+++|++++++++|.|||++||+ ++.|+|++|+.|||||
T Consensus 303 Dh~p~~~~~k~~---~~~~~~~G~~g~e~~l~~l~~~~-~~~~lsl~~~~~~~s~npAk~lgl-~~~G~L~~G~~ADlvi 377 (438)
T PRK07575 303 DHAPHTLEEKAQ---PYPNSPSGMPGVETSLPLMLTAA-MRGKCTVAQVVRWMSTAVARAYGI-PNKGRIAPGYDADLVL 377 (438)
T ss_pred CCCCCCHHHccC---CcccCCCCcccHHHHHHHHHHHH-hcCCCCHHHHHHHHhhhHHHHcCC-CCCCccCCCCcCCEEE
Confidence 999999887763 78889999999999999999654 567799999999999999999999 5569999999999999
Q ss_pred EcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeec
Q 009282 447 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 506 (538)
Q Consensus 447 ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~ 506 (538)
+|.+..+.++.+++.+...|+||+|..+.+++..||++|++||++|+++. ++.|+++++
T Consensus 378 ~D~~~~~~v~~~~~~s~~~~sp~~g~~~~G~v~~tiv~G~~v~~~g~~~~-~~~G~~~~~ 436 (438)
T PRK07575 378 VDLNTYRPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVFDRGQVNT-EVRGQALTF 436 (438)
T ss_pred EcCCCCEEEchHHccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEEcc-CCCceEeec
Confidence 99999999998889999999999999999999999999999999999986 458999874
|
|
| >PRK02382 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=422.91 Aligned_cols=431 Identities=28% Similarity=0.444 Sum_probs=353.1
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHH
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~ 132 (538)
.+++|+|++|++.+...+++|+|+||+|++|++....+++.++||++|++|+|||||+|+|+..+ +....+++....+
T Consensus 2 ~dl~i~n~~v~~~~~~~~~~v~I~dg~I~~i~~~~~~~~~~~~id~~g~~v~PG~ID~H~H~~~~--g~~~~e~~~~~~~ 79 (443)
T PRK02382 2 RDALLKDGRVYYNNSLQPRDVRIDGGKITAVGKDLDGSSSEEVIDARGMLLLPGGIDVHVHFREP--GYTHKETWYTGSR 79 (443)
T ss_pred ceEEEECCEEEeCCCceEEEEEEECCEEEEecCCCCCCCCCeEEECCCCEEcCCEeeeeeeccCC--CCCchhhHHHHHH
Confidence 57899999999876667899999999999998654333457899999999999999999998766 5556678888899
Q ss_pred HHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEE-EEEeeeC-C
Q 009282 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF-KFFMAYK-G 208 (538)
Q Consensus 133 ~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i-k~~~~~~-~ 208 (538)
+++++||||++++...... ...+.++...+... ...++++++.... +..+++..+. +.|+..+ |++..+. +
T Consensus 80 aa~~gGvTtv~~~~~t~p~~~~~~~~~~~~~~a~~~s~v~~~~~~~~~----~~~~~l~~l~-~~gv~~~gkv~~~~~~~ 154 (443)
T PRK02382 80 SAAAGGVTTVVDQPNTDPPTVDGESFDEKAELAARKSIVDFGINGGVT----GNWDPLESLW-ERGVFALGEIFMADSTG 154 (443)
T ss_pred HHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhCcCceEEEEEEeeec----cchhhHHHHH-hcCccceeEEEEEecCC
Confidence 9999999999998644333 34445555444433 3566666654332 1244566666 4588777 7776542 3
Q ss_pred CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEE
Q 009282 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (538)
Q Consensus 209 ~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 288 (538)
....+.+.+.++++.+++.|+++.+|+++.......... ..|...+..|...+|...|..++.+++.+++..+.++|+
T Consensus 155 ~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~--~~g~~~~~~~~~~~p~~~E~~av~~~~~la~~~g~~~hi 232 (443)
T PRK02382 155 GMGIDEELFEEALAEAARLGVLATVHAEDEDLFDELAKL--LKGDADADAWSAYRPAAAEAAAVERALEVASETGARIHI 232 (443)
T ss_pred CcccCHHHHHHHHHHHHhcCCeEEEecCCHHHHHHhhHh--hcCCCCHhhCCCcCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 345577899999999999999999999887553322211 234445556666789999999999999999999999999
Q ss_pred EeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCC
Q 009282 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (538)
Q Consensus 289 ~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~ 368 (538)
.|+++...++.+.+. . |+++.++|++.++++.+.. .+..++++||+|...+++.++++++.|...+++|||
T Consensus 233 ~h~ss~~~~~~i~~~---~--vt~ev~ph~L~l~~~~~~~----~~~~~k~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh 303 (443)
T PRK02382 233 AHISTPEGVDAARRE---G--ITCEVTPHHLFLSRRDWER----LGTFGKMNPPLRSEKRREALWERLNDGTIDVVASDH 303 (443)
T ss_pred EECCCHHHHHHHHHC---C--cEEEEchhhhhcCHHHHhc----cCceEEEcCCCCChHHHHHHHHHHhCCCCCEEEcCC
Confidence 999998876766543 2 8999999999999887642 235678999999999999999999999999999999
Q ss_pred CCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEc
Q 009282 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 448 (538)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld 448 (538)
.|++...|.. +|+.+|+|++|++..++.++ .++..++++++++++++|.|||+++|+ ++.|+|++|+.|||+++|
T Consensus 304 ~P~~~~~K~~---~~~~~~~G~~g~e~~~~~~~-~~~~~~~~~l~~~~~~~t~~pA~~~g~-~~~G~l~~G~~AD~vi~d 378 (443)
T PRK02382 304 APHTREEKDA---DIWDAPSGVPGVETMLPLLL-AAVRKNRLPLERVRDVTAANPARIFGL-DGKGRIAEGYDADLVLVD 378 (443)
T ss_pred CCCCHHHhcC---ChhhCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhHHHHHHcCC-CCCCccCCCCcCCEEEEc
Confidence 9999887764 79999999999999999988 577888899999999999999999999 578999999999999999
Q ss_pred CCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 449 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
.+..+.+..+.+.+...|+||++.... .|.+||++|++||++|+++...+.|+++++.
T Consensus 379 ~~~~~~~~~~~~~s~~~~sp~~g~~~~-~v~~tiv~G~~v~~~~~~~~~~~~G~~~~~~ 436 (443)
T PRK02382 379 PDAAREIRGDDLHSKAGWTPFEGMEGV-FPELTMVRGTVVWDGDDINAKRGRGEFLRGR 436 (443)
T ss_pred CCCcEEEcHHHhcccCCCCCcCCCEec-eEEEEEECCEEEEECCEEecCCCCceEeCCc
Confidence 999999998888999999999998755 8899999999999999999876789999874
|
|
| >PRK09060 dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=419.58 Aligned_cols=431 Identities=27% Similarity=0.366 Sum_probs=350.6
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
+++++|+|++|++++....++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+..+ +....+++.+..
T Consensus 4 ~~d~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~ID~HvH~~~~--~~~~~e~~~t~~ 80 (444)
T PRK09060 4 TFDLILKGGTVVNPDGEGRADIGIRDGRIAAIGDLSG-ASAGEVIDCRGLHVLPGVIDSQVHFREP--GLEHKEDLETGS 80 (444)
T ss_pred cCcEEEECCEEECCCCCeeeEEEEECCEEEEecCCCC-CCCceEEECCCCEEccCEEeccccccCC--CCCccchHHHHH
Confidence 4578999999999877677999999999999987543 2346899999999999999999998766 556778999999
Q ss_pred HHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc-cceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeC--
Q 009282 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYK-- 207 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-- 207 (538)
++++++||||++++...... ...+.+....+.... .+++++++......+. .++.++....|+.++|.|+++.
T Consensus 81 ~aa~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~---~~l~el~~~~gv~g~k~fm~~~~~ 157 (444)
T PRK09060 81 RAAVLGGVTAVFEMPNTNPLTTTAEALADKLARARHRMHCDFAFYVGGTRDNA---DELAELERLPGCAGIKVFMGSSTG 157 (444)
T ss_pred HHHHhCCcEEEEECCCCCCCCChHHHHHHHHHHhcccceeeEEEEeccCCCCH---HHHHHHHhhcCceEEEEEeccCCC
Confidence 99999999999998643322 445555555554433 6788887765554333 3444444345888899887542
Q ss_pred CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEE
Q 009282 208 GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287 (538)
Q Consensus 208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 287 (538)
.....+...+.++++. .+..+..|+++...+... ......| .+..|...+|...|...+.+++.+++..+.++|
T Consensus 158 ~~~~~d~~~l~~~~~~---~~~~v~~H~E~~~l~~~~-~~~~~~g--~~~~~~~~~p~~aE~~av~~~~~la~~~~~~lh 231 (444)
T PRK09060 158 DLLVEDDEGLRRILRN---GRRRAAFHSEDEYRLRER-KGLRVEG--DPSSHPVWRDEEAALLATRRLVRLARETGRRIH 231 (444)
T ss_pred CcccCCHHHHHHHHHh---CCCeEEEECCCHHHHHHH-HHHHhcC--CcccccccCCHHHHHHHHHHHHHHHHHHCCCEE
Confidence 2223355566666544 489999999987655433 3444555 445566778999999999999999999999999
Q ss_pred EEeccCHHHHHHHHHHHHcCCcEEEeccccccccCccc-ccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeC
Q 009282 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW-LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (538)
Q Consensus 288 ~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgt 366 (538)
+.|+++...++.++..++ .++++.++|++.++.+. +.. .+..++++||+|...+++.++++++.|+.++++|
T Consensus 232 i~h~st~~~v~~i~~~~~---~vt~ev~ph~l~l~~~~~~~~----~~~~~k~~PPlr~~~~~~~l~~al~~G~id~i~s 304 (444)
T PRK09060 232 VLHVSTAEEIDFLADHKD---VATVEVTPHHLTLAAPECYER----LGTLAQMNPPIRDARHRDGLWRGVRQGVVDVLGS 304 (444)
T ss_pred EEeCCCHHHHHHHHHhCC---CeEEEeChHHhccCchhhccc----CCceEEEeCCCCCHHHHHHHHHHHhCCCccEEec
Confidence 999999877666654443 48999999999998876 432 2367899999999999999999999999999999
Q ss_pred CCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEE
Q 009282 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 446 (538)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvv 446 (538)
||.|+....+.. +|+.+++|++|++..+++.+. .+..+.++++++++++|.|||++||+ ++.|+|++|+.|||||
T Consensus 305 Dh~p~~~~~k~~---~~~~~~~G~~g~e~~~~l~~~-~v~~g~l~~~~~~~~~s~~pa~~~gl-~~~G~l~~G~~ADlvl 379 (444)
T PRK09060 305 DHAPHTLEEKAK---PYPASPSGMTGVQTLVPIMLD-HVNAGRLSLERFVDLTSAGPARIFGI-AGKGRIAVGYDADFTI 379 (444)
T ss_pred CCCCCCHHHhcC---CcccCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHhHHHHhCC-CCCCcccCCCcCCEEE
Confidence 999999887754 788999999999999998884 57788899999999999999999999 5679999999999999
Q ss_pred EcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 447 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 447 ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
+|.+..+.++.+.+.++..|+||+|..+.++|..||++|++||++|+++.. ..|+++++.
T Consensus 380 ~d~~~~~~v~~~~~~s~~~~sp~~g~~l~g~~~~tiv~G~~v~~~g~~~~~-~~G~~~~~~ 439 (444)
T PRK09060 380 VDLKRRETITNEWIASRCGWTPYDGKEVTGWPVGTIVRGQRVMWDGELVGP-PTGEPVRFL 439 (444)
T ss_pred EcCCCCEEEChHHhcccCCCCCCCCCEEeeeEEEEEECCEEEEECCEEccC-CCccCcccc
Confidence 999999999998899999999999999999999999999999999999974 489998865
|
|
| >PRK09357 pyrC dihydroorotase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=414.90 Aligned_cols=418 Identities=28% Similarity=0.423 Sum_probs=340.2
Q ss_pred cEEEECcEEEcCCC-ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHH
Q 009282 54 KILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (538)
Q Consensus 54 ~~~i~n~~vv~~~~-~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~ 132 (538)
+++|+|++|++++. ..+++|+|+||+|++|++... +++.++||++|++|+|||||+|+|+..+ +..+.+++....+
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~I~I~dg~I~~i~~~~~-~~~~~~iD~~g~~v~PG~ID~H~H~~~~--~~~~~e~~~~~~~ 78 (423)
T PRK09357 2 MILIKNGRVIDPKGLDEVADVLIDDGKIAAIGENIE-AEGAEVIDATGLVVAPGLVDLHVHLREP--GQEDKETIETGSR 78 (423)
T ss_pred cEEEEeEEEECCCCCcceeeEEEECCEEEEeeCCCC-CCCCeEEECCCCEEeCCEEecccccCCC--CccccccHHHHHH
Confidence 47999999998753 468999999999999986522 2357899999999999999999998765 5567888999999
Q ss_pred HHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc-cceeeeeeeeeec-CChhhHHHHHHHHHHcCCcEEEEEeeeCCC
Q 009282 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (538)
Q Consensus 133 ~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (538)
.++++||||++|+....+. .....++...+.... +..++..+..... ..++...++..+. ..|+..++ .++.
T Consensus 79 ~a~~~GvTt~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~~~~----~~~~ 153 (423)
T PRK09357 79 AAAAGGFTTVVAMPNTKPVIDTPEVVEYVLDRAKEAGLVDVLPVGAITKGLAGEELTEFGALK-EAGVVAFS----DDGI 153 (423)
T ss_pred HHHhCCCeEEEecCCCCCCCCcHHHHHHHHHHhccCCcccEEEEEEEEeCCCCccHHHHHHHH-hCCcEEEE----CCCc
Confidence 9999999999999743332 445555555555433 4455555443322 1233456666665 45654443 2344
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
+..+.+.+++.++.|+++|.++++|+++....... +...|......+...+|...|...+.+++.+++..+.++++.
T Consensus 154 ~~~~~~~l~~~~~~a~~~g~~v~iH~ee~~~~~~~---~~~~g~~~~~~~~~~~p~~~E~~~i~~~~~la~~~g~~~hi~ 230 (423)
T PRK09357 154 PVQDARLMRRALEYAKALDLLIAQHCEDPSLTEGG---VMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHIC 230 (423)
T ss_pred ccCCHHHHHHHHHHHHhcCCEEEEeCCCHHHhhcc---cccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence 55678999999999999999999999876432211 122233333344456788899999999999999999999999
Q ss_pred eccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCC
Q 009282 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (538)
Q Consensus 290 h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~ 369 (538)
|++.....+.++..++.|+.|+++.++|++.++++.+.. .+..+++.||+|...+.+.+++++++|+.+++||||.
T Consensus 231 H~s~~~~~~~i~~a~~~g~~v~~e~~ph~L~~~~~~~~~----~~~~~k~~Pplr~~~~~~~l~~~l~~G~~~~i~sDh~ 306 (423)
T PRK09357 231 HVSTAGSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLT----YDPNYKVNPPLRTEEDREALIEGLKDGTIDAIATDHA 306 (423)
T ss_pred eCCCHHHHHHHHHHHHcCCCEEEEechHHheEcHHHHhC----cCCceEECCCCCCHHHHHHHHHHHHcCCCeEEecCCC
Confidence 999999889999889999999999999999999887643 2467899999999999999999999999999999999
Q ss_pred CCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcC
Q 009282 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 449 (538)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~ 449 (538)
|++...++. +|+..+.|+++++..++..+..++..++++++++++++|.|||+++|+. . |+|++|+.|||+++|.
T Consensus 307 p~~~~~k~~---~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~A~~~g~~-~-G~i~~G~~AD~~i~d~ 381 (423)
T PRK09357 307 PHAREEKEC---EFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMTINPARILGLP-A-GPLAEGEPADLVIFDP 381 (423)
T ss_pred CCChHHccC---CHhhCCCCceEHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-C-CccCCCCcCCEEEEcC
Confidence 998877653 6889999999999999998876777778999999999999999999995 4 9999999999999999
Q ss_pred CCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 450 NSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
+..+.++++++.+...|+||+|..+.++|..||++|++||++
T Consensus 382 ~~~~~v~~~~~~~~~~~~p~~g~~~~g~v~~t~v~G~~v~~~ 423 (423)
T PRK09357 382 EAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTIVDGKIVYQD 423 (423)
T ss_pred CCCEEEchhhcccCCCCCCCcCCEEeeEEEEEEECCEEEecC
Confidence 999999988899999999999999999999999999999975
|
|
| >PRK08417 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=406.66 Aligned_cols=382 Identities=21% Similarity=0.320 Sum_probs=318.3
Q ss_pred EEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-
Q 009282 73 VYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING- 151 (538)
Q Consensus 73 V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~- 151 (538)
|+|+||||++|++.. .+.++||++|++|+|||||+|+|+..+ +. ..+++.++.++++++||||+++|....+.
T Consensus 1 i~I~dG~I~~i~~~~---~~~~viDa~g~~vlPG~ID~HvH~~~~--~~-~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~ 74 (386)
T PRK08417 1 IRIKDGKITEIGSDL---KGEEILDAKGKTLLPALVDLNVSLKND--SL-SSKNLKSLENECLKGGVGSIVLYPDSTPAI 74 (386)
T ss_pred CEEECCEEEEecCCC---CCCeEEECCCCEEccCeeEEeeeeCCC--Cc-ChhhHHHHHHHHHcCCcEEEEeCCCCCCCC
Confidence 689999999998764 357899999999999999999999765 43 35889999999999999999999753222
Q ss_pred CHHHHHHHHHHHhcc---cceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcC
Q 009282 152 SLTAGFEAYEKKAKN---SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228 (538)
Q Consensus 152 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g 228 (538)
...+.++...+.... ..+++. ... ..++...++..+. +.|+..+|.+. ..+.+.+.++++.+++.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~i~~l~-~~Gv~~~k~~~------~~~~~~l~~~~~~a~~~g 143 (386)
T PRK08417 75 DNEIALELINSAQRELPMQIFPSI---RAL-DEDGKLSNIATLL-KKGAKALELSS------DLDANLLKVIAQYAKMLD 143 (386)
T ss_pred CCHHHHHHHHHHhhccCCcEEEEE---EEE-CCCccHHHHHHHH-HCCCEEEECCC------CCCHHHHHHHHHHHHHcC
Confidence 333444444333222 233332 122 2344577787776 78999887631 357889999999999999
Q ss_pred CeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCC
Q 009282 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ 308 (538)
Q Consensus 229 ~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~ 308 (538)
.++..|+++...... .....|......+...+|..+|..++.+++.++...+.++|+.|+++...++.++..++.|+
T Consensus 144 ~~V~~HaEd~~~~~~---~~~~~g~~~~~~~~~~rp~~aE~~~v~~~~~la~~~~~~lhi~hvS~~~~~~~i~~ak~~g~ 220 (386)
T PRK08417 144 VPIFCRCEDSSFDDS---GVMNDGELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGE 220 (386)
T ss_pred CEEEEeCCCHHHhhH---HHHhcChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHCCC
Confidence 999999998765443 23344555555566778999999999999999999999999999999999999999999999
Q ss_pred cEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCC
Q 009282 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (538)
Q Consensus 309 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~ 388 (538)
.|++++++|||.++++++.. .+..++++||+|..++++.+|+++..|...+++|||.|++...|.. +|+.+|.
T Consensus 221 ~vt~ev~ph~L~l~~~~~~~----~~~~~k~~PPlR~~~d~~~L~~~l~~g~Id~i~SDHaP~~~~~K~~---~~~~a~~ 293 (386)
T PRK08417 221 KLLKEVSIHHLILDDSACEN----FNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKKDL---AFDEAAF 293 (386)
T ss_pred CEEEEechHHHeeCHHHhcC----cCcccEECCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhHCCC
Confidence 99999999999999987642 2357899999999999999999999999999999999999887753 7899999
Q ss_pred CCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCc
Q 009282 389 GVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNV 468 (538)
Q Consensus 389 g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~ 468 (538)
|++|++..++.++..++..++++++++++++|.|||++||+. + |+|++|+.|||+++|.+..+.++. .|+|
T Consensus 294 G~~g~e~~~~~~~~~~v~~~~~~~~~~~~~~t~~pA~~lgl~-~-G~l~~G~~ADlvi~d~~~~~~~~~-------~~~p 364 (386)
T PRK08417 294 GIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLN-S-GEIEVGKEADLVLFDPNESTIIDD-------NFSL 364 (386)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCC-C-CccCCCCcCCEEEEcCCCCeEeCC-------CCCC
Confidence 999999999999988888888999999999999999999994 4 999999999999999998887763 4789
Q ss_pred cCCeEEeeEEEEEEECCEEEEE
Q 009282 469 YEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 469 ~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
|+|..+.++|..||++|++||+
T Consensus 365 ~~g~~~~g~v~~tiv~G~~v~~ 386 (386)
T PRK08417 365 YSGDELYGKIEAVIIKGKLYLE 386 (386)
T ss_pred ccCCEEeccEEEEEECCEEEeC
Confidence 9999999999999999999984
|
|
| >TIGR00857 pyrC_multi dihydroorotase, multifunctional complex type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-49 Score=398.95 Aligned_cols=405 Identities=28% Similarity=0.409 Sum_probs=336.5
Q ss_pred eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCC
Q 009282 69 QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (538)
Q Consensus 69 ~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~ 148 (538)
..++|+|+||||++|++.. .+.+.++||++|++|+|||||+|+|+... +....+++....+.++++||||++++...
T Consensus 4 ~~~~v~I~~g~I~~i~~~~-~~~~~~~ida~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~~~~~~~~~GvTtv~~~~~t 80 (411)
T TIGR00857 4 TEVDILVEGGRIKKIGKLR-IPPDAEVIDAKGLLVLPGFIDLHVHLRDP--GEEYKEDIESGSKAAAHGGFTTVADMPNT 80 (411)
T ss_pred EEEEEEEECCEEEEeeccC-CCCCCeEEECCCCEEecCEEEcccCCCCC--CCccHhHHHHHHHHHHhCCeEEEEEecCC
Confidence 5689999999999997522 23356899999999999999999999754 44567888888999999999999998643
Q ss_pred CCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCCh-hhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHH
Q 009282 149 ING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDE-VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225 (538)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~ 225 (538)
.+. ...+.++...+... ...+++.++........ +.+.++..+. ..|+.+ +.|..+ +.+..+...+.++++.++
T Consensus 81 ~p~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~~~~l~e~~~l~-~~Gv~g-~~f~~~-~~~~~~~~~l~~~~~~a~ 157 (411)
T TIGR00857 81 KPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKELTEAYELK-EAGAVG-RMFTDD-GSEVQDILSMRRALEYAA 157 (411)
T ss_pred CCCCCcHHHHHHHHHHhccCCcccEEEEEEEecCCccccHHHHHHHH-HCCcEE-EEEEeC-CcccCCHHHHHHHHHHHH
Confidence 322 45555665555543 35788887776655432 2456666666 668877 223222 223467899999999999
Q ss_pred hcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHH
Q 009282 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305 (538)
Q Consensus 226 ~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~ 305 (538)
++|+++.+|+++....... ....|...+..|...+|..+|..++.+++.++...+.++|+.|+++...++.++..++
T Consensus 158 ~~g~~v~iH~E~~~l~~~~---~~~~g~~~~~~~~~~~p~~aE~~ai~~~~~la~~~~~~~~i~Hvs~~~~l~~i~~a~~ 234 (411)
T TIGR00857 158 IAGVPIALHAEDPDLIYGG---VMHEGPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKS 234 (411)
T ss_pred HcCCEEEEecCCHHHHhhh---hhcCCcccHhhCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHH
Confidence 9999999999987654322 3445656666777889999999999999999999999999999999999999999999
Q ss_pred cCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCccc
Q 009282 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385 (538)
Q Consensus 306 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~ 385 (538)
.|+.|+++.++|+++++.+.+.. .+..++++||+|..++++.++++++.|...+++|||.|+....+.. +|+.
T Consensus 235 ~g~~v~~ev~ph~L~~~~~~~~~----~~~~~k~~Pplr~~~~~~~L~~~l~~g~i~~i~sDh~p~~~~~k~~---~~~~ 307 (411)
T TIGR00857 235 QGIKITAEVTPHHLLLSEEDVAR----LDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEEKTK---EFAA 307 (411)
T ss_pred cCCcEEEeechhhheecHHHHhC----CCccEEEcCCCCCHHHHHHHHHHHhcCCCcEEEcCCCCCChHHccC---CHhh
Confidence 99999999999999999887753 3478999999999999999999999999999999999998776653 7889
Q ss_pred CCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCC
Q 009282 386 IPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465 (538)
Q Consensus 386 ~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~ 465 (538)
.+.|+++++..++..+. .+..++++++++++++|.|||+++|++ +.|+|++|+.|||+++|.+..+.++.+++.+...
T Consensus 308 ~~~G~~g~e~~~~~~~~-~~~~~~~~~~~~~~~~t~~pa~~~g~~-~~G~l~~G~~ADlvi~d~~~~~~~~~~~~~~~~~ 385 (411)
T TIGR00857 308 APPGIPGLETALPLLLQ-LLVKGLISLKDLIRMLSINPARIFGLP-DKGTLEEGNPADITVFDLKKEWTINAETFYSKAK 385 (411)
T ss_pred CCCCceeHHHHHHHHHH-HHHhCCCCHHHHHHHHhHHHHHHhCCC-CCCccCCCCcCCEEEEcCCCCEEEchHHCccCCC
Confidence 99999999999998884 454557999999999999999999994 4499999999999999999999999888888999
Q ss_pred CCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 466 TNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 466 ~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
++||+|..+.++|.+|+++|++||++
T Consensus 386 ~sp~~g~~~~g~v~~tiv~G~~v~~~ 411 (411)
T TIGR00857 386 NTPFEGMSLKGKPIATILRGKVVYED 411 (411)
T ss_pred CCCcCCCEEEeEEEEEEECCEEEecC
Confidence 99999999888999999999999975
|
All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. |
| >PRK01211 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=393.05 Aligned_cols=402 Identities=21% Similarity=0.302 Sum_probs=324.2
Q ss_pred EECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHh
Q 009282 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALA 136 (538)
Q Consensus 57 i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~ 136 (538)
|.| ++++.+..+.++|+|+||||++|+++.. +.++||++| +|+|||||+|+|+..+ |....+++.++.+++++
T Consensus 3 ~~~-~~~~~~~~~~~di~I~dGkI~~i~~~~~---~~~~ida~g-~vlPG~ID~HvH~r~p--g~~~ked~~s~s~AAaa 75 (409)
T PRK01211 3 ICG-NFYYKGKFDYLEIEVEDGKIKSIKKDAG---NIGKKELKG-AILPAATDIHVHFRTP--GETEKEDFSTGTLSAIF 75 (409)
T ss_pred eec-eeEEcCcEEEEEEEEECCEEEEecCCCC---CceEEEecc-EEcCCeEEeeeccCCC--CCcccCcHHHHHHHHHc
Confidence 444 4454455667899999999999987542 468999999 9999999999999988 77889999999999999
Q ss_pred CCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCH
Q 009282 137 GGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214 (538)
Q Consensus 137 ~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~ 214 (538)
.||||++||....+. ...+.++...+... ...++++++......+. + +. ..|+.++|+|..+... ....
T Consensus 76 GGvTtv~dmPnt~P~~~~~e~~~~~~~~a~~~s~vd~~~~~~~~~~~~----~---~~-~~g~~~~k~f~~~~~~-~~~~ 146 (409)
T PRK01211 76 GGTTFIMDMPNNNIPIKDYNAFSDKLGRVAPKAYVDFSLYSMETGNNA----L---IL-DERSIGLKVYMGGTTN-TNGT 146 (409)
T ss_pred CCcEEEEECCCCCCCCChHHHHHHHHHHhccCceeeEEEEeccCCchh----h---HH-hccCcEEEEEcCCCcC-CCcc
Confidence 999999999753322 45666666665553 46888988876533221 1 22 3488899998653210 0011
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCH
Q 009282 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (538)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~ 294 (538)
......++.+.+.|..+..|+++......... ..+ ....|...+|..+|..++.+++.++.. ++|+.|.++.
T Consensus 147 ~~~~~~l~~~~~~g~~v~~H~E~~~l~~~~~~---~~~--~~~~~~~~rP~~aE~~ai~~~~~la~~---~~hi~HvSt~ 218 (409)
T PRK01211 147 DIEGGEIKKINEANIPVFFHAELSECLRKHQF---ESK--NLRDHDLARPIECEIKAVKYVKNLDLK---TKIIAHVSSI 218 (409)
T ss_pred ccCHHHHHHHHccCCEEEEeccChHHhhhhhh---Ccc--hHhhCCCCCCHHHHHHHHHHHHHHhCC---CcEEEEecCh
Confidence 11223446667899999999998765432211 111 112356678999999999999998876 6999999997
Q ss_pred HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChh
Q 009282 295 DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNST 374 (538)
Q Consensus 295 ~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~ 374 (538)
... ..|++++++|||.++++.. .+..++++||+|..++++++|+++..|..++++|||+|++..
T Consensus 219 ~~~----------~~vt~Ev~phhL~l~~~~~------~~~~~kvnPPLRs~~d~~aL~~~l~dG~ID~i~SDHaP~~~~ 282 (409)
T PRK01211 219 DVI----------GRFLREVTPHHLLLNDDMP------LGSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAPHTEE 282 (409)
T ss_pred hhc----------CceEEEecHHHHccccccc------cCCceeEcCCCCCHHHHHHHHHHHhCCCCCEEeCCCCCCChh
Confidence 753 2799999999999998751 346899999999999999999999999999999999999877
Q ss_pred hhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCcee
Q 009282 375 QKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE 454 (538)
Q Consensus 375 ~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~ 454 (538)
+| .+|+.+|+|++|++..+++++ .++..+++|++++++..|.|||++||+ + .|+|++|+.|||||+|++..+.
T Consensus 283 eK----~~~~~a~~G~~gle~~lpl~~-~~v~~~~isl~~~v~~~s~nPAki~gl-~-kG~l~~G~~ADlvi~D~~~~~~ 355 (409)
T PRK01211 283 DK----QEFEYAKSGIIGVETRVPLFL-ALVKKKILPLDVLYKTAIERPASLFGI-K-KGKIEEGYDADFMAFDFTNIKK 355 (409)
T ss_pred Hh----CCHhhCCCCCCcHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHhCC-C-CCcccCCCcCCEEEEcCCCeEE
Confidence 75 378999999999999999988 578888899999999999999999999 4 6999999999999999999999
Q ss_pred eccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 455 ITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
++.+.+.+...|+||+|+.+. +|..||++|++||++++++... .|+++++.
T Consensus 356 v~~~~~~s~~~~spf~G~~~~-~v~~tiv~G~~v~~~~~~~~~~-~G~~~~~~ 406 (409)
T PRK01211 356 INDKRLHSKCPVSPFNGFDAI-FPSHVIMRGEVVIDNYELISER-TGKFVPKG 406 (409)
T ss_pred EChHHhhccCCCCCCCCCEec-cEEEEEECCEEEEECCEEcccc-CceEeccC
Confidence 999999999999999999877 9999999999999999998776 89999864
|
|
| >PRK04250 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-47 Score=380.27 Aligned_cols=392 Identities=25% Similarity=0.334 Sum_probs=312.1
Q ss_pred CcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCC
Q 009282 59 GGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG 138 (538)
Q Consensus 59 n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~G 138 (538)
+++|++.....+++|+|+||+|++|++. . .++.++||++|++|+|||||+|+|+... +....+++.+..++++++|
T Consensus 3 ~~~v~~~~~~~~~~i~i~~G~I~~i~~~-~-~~~~~~iD~~g~~v~PG~ID~HvH~~~~--~~~~~e~~~~~~~aa~~gG 78 (398)
T PRK04250 3 EGKFLLKGRIVEGGIGIENGRISKISLR-D-LKGKEVIKVKGGIILPGLIDVHVHLRDF--EESYKETIESGTKAALHGG 78 (398)
T ss_pred eEEEEECCcEEEEEEEEECCEEEEeeCC-C-CCCCeEEECCCCEEccCEEeccccccCC--CCCcHHHHHHHHHHHHhCC
Confidence 5688887777789999999999999741 1 1256899999999999999999999654 4567788999999999999
Q ss_pred cEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHH
Q 009282 139 TTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216 (538)
Q Consensus 139 vTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~ 216 (538)
|||+++|....+. ...+.++...+... ..+++++++. ....+ ..++.++. . ..+|.|+.+..... ..+.
T Consensus 79 vTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~---~~~l~~l~-~---~~~k~f~~~~~~~~-~~~~ 149 (398)
T PRK04250 79 ITLVFDMPNTKPPIMDEKTYEKRMRIAEKKSYADYALNF-LIAGN---CEKAEEIK-A---DFYKIFMGASTGGI-FSEN 149 (398)
T ss_pred eEEEEECCCCCCCCCcHHHHHHHHHHhCcCceeeEEEEE-ecCCC---HHHHHHHH-h---hheEEEEecCCCch-hHHH
Confidence 9999999644332 45566666555554 4688888877 43322 33344443 1 24677764422111 1222
Q ss_pred HHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHH
Q 009282 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA 296 (538)
Q Consensus 217 l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~ 296 (538)
+... ..+.+..+.+|+++..... + ...+|..+|..++.+++.++...+.++|+.|.++...
T Consensus 150 ~~~~---~~~~~~~v~~H~E~~~~~~---------~-------~~~~p~~aE~~av~r~~~la~~~~~~lhi~HvSt~~~ 210 (398)
T PRK04250 150 FEVD---YACAPGIVSVHAEDPELIR---------E-------FPERPPEAEVVAIERALEAGKKLKKPLHICHISTKDG 210 (398)
T ss_pred HHHH---HHhcCCeEEEEecChhhhh---------c-------ccCCCHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHH
Confidence 2221 2233567999999875432 1 1247889999999999999999999999999999877
Q ss_pred HHHHHHHHHcCCc-EEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhh
Q 009282 297 MEEIAKARKAGQR-VIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQ 375 (538)
Q Consensus 297 ~~~i~~~~~~g~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~ 375 (538)
.+.+ ++.|.. |++++++|||.++++.+. .+..++++||+|...+++++|+++.. .++++|||.|++...
T Consensus 211 ~~~i---~~~g~~~vt~Ev~ph~L~l~~~~~~-----~~~~~k~~PPLR~~~d~~aL~~~l~~--Id~i~sDHaP~~~~~ 280 (398)
T PRK04250 211 LKLI---LKSNLPWVSFEVTPHHLFLTRKDYE-----RNPLLKVYPPLRSEEDRKALWENFSK--IPIIASDHAPHTLED 280 (398)
T ss_pred HHHH---HHcCCCcEEEEeCHHHhccCHHHHC-----CCCceEEcCCCCCHHHHHHHHHhhcc--CCEEEcCCcccCHHH
Confidence 6655 456887 999999999999998762 24789999999999999999999964 899999999999877
Q ss_pred hhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceee
Q 009282 376 KAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEI 455 (538)
Q Consensus 376 ~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~ 455 (538)
+.. .++|++|++..+++++ .++..+++|++++++++|.|||++||+ ++.| |++|+.|||+|+|++..+.+
T Consensus 281 k~~-------~~~G~~g~e~~lpl~~-~~v~~~~lsl~~~v~~~t~npAk~lgl-~~~G-L~~G~~ADlvi~D~~~~~~v 350 (398)
T PRK04250 281 KEA-------GAAGIPGLETEVPLLL-DAANKGMISLFDIVEKMHDNPARIFGI-KNYG-IEEGNYANFAVFDMKKEWTI 350 (398)
T ss_pred hhc-------CCCCcchHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHhCC-CCcC-ccCCCcCCEEEEcCCCcEEE
Confidence 642 4789999999999998 478888899999999999999999999 5579 99999999999999999999
Q ss_pred ccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceE
Q 009282 456 TARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKY 503 (538)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~ 503 (538)
+..++.+...|+||+|..+.++|.+||++|++||++|+++... +|++
T Consensus 351 ~~~~~~s~~~~sp~~g~~l~g~v~~tiv~G~~v~~~g~~~~~~-~G~~ 397 (398)
T PRK04250 351 KAEELYTKAGWTPYEGFKLKGKVIMTILRGEVVMEDDEIIGKP-RGVR 397 (398)
T ss_pred ChhhccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEEcCCC-CCeE
Confidence 9888889899999999999999999999999999999998754 6665
|
|
| >PRK00369 pyrC dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=358.39 Aligned_cols=375 Identities=21% Similarity=0.249 Sum_probs=297.9
Q ss_pred eeeEEEeCCEEEEecCCCCCCCCceEEec-CCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCC
Q 009282 70 IADVYVEDGIVVAVQPNINVGDDVKVLDA-TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (538)
Q Consensus 70 ~~~V~I~~grI~~Vg~~~~~~~~~~vID~-~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~ 148 (538)
+..|.|++|+|..|++.. +.++++||+ +|++|+|||||+|+|+..+ |....+++.++.+++++.||||+++|...
T Consensus 13 ~~~~~~~~~~~~~i~~~~--~~~~~~id~~~G~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~~mPnt 88 (392)
T PRK00369 13 KEIKEICINFDRRIKEIK--SRCKPDLDLPQGTLILPGAIDLHVHLRGL--KLSYKEDVASGTSEAAYGGVTLVADMPNT 88 (392)
T ss_pred CceEEEeeeeeeeEeecc--CCCCceeecCCCCEEeCCEEEcccccCCC--CCcccccHHHHHHHHHhCCcEEEEECCCC
Confidence 467899999999998753 447889999 6999999999999999887 77788999999999999999999999654
Q ss_pred CCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHh
Q 009282 149 ING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226 (538)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~ 226 (538)
.+. ...+.++...+... ...++++++...... ..++ . ..|..++|.|.+. ..+. .+++.+.+
T Consensus 89 ~P~~~~~~~l~~~~~~a~~~~~vd~~~~~~~~~~----~~el---~-~~~~~g~k~f~~~----~~~~----~~~~~~~~ 152 (392)
T PRK00369 89 IPPLNTPEAITEKLAELEYYSRVDYFVYSGVTKD----PEKV---D-KLPIAGYKIFPED----LERE----ETFRVLLK 152 (392)
T ss_pred CCCCChHHHHHHHHHHhCcCCeEEEEEEeeccCC----HHHH---H-HhhCceEEEECCC----CchH----HHHHHHHH
Confidence 332 55666666666554 468888888754321 1222 2 4477788887421 1122 24444555
Q ss_pred cCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHc
Q 009282 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKA 306 (538)
Q Consensus 227 ~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~ 306 (538)
++..+.+|+++....... +...+|..+|..++.++..+ .++|+.|.++... ++.+++.
T Consensus 153 ~~~~v~~HaE~~~l~~~~--------------~~~~rp~~aE~~ai~~~~~~-----~~lhi~HvSt~~~---v~~ak~~ 210 (392)
T PRK00369 153 SRKLKILHPEVPLALKSN--------------RKLRRNCWYEIAALYYVKDY-----QNVHITHASNPRT---VRLAKEL 210 (392)
T ss_pred hCCEEEEeCCCHHHhhcc--------------hhcccCHHHHHHHHHHHHHh-----CCEEEEECCCHHH---HHHHHHC
Confidence 669999999987543311 12236666666665555554 7999999999764 4556777
Q ss_pred CCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccC
Q 009282 307 GQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKI 386 (538)
Q Consensus 307 g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~ 386 (538)
| +++++++|||.++++. +..++++||+|..++++++|++++. ..+++|||.|+...++.. +|+.+
T Consensus 211 g--vt~Ev~pHhL~l~~~~--------~~~~k~~PPLR~~~dr~aL~~~l~~--id~i~SDHaP~~~~~K~~---~f~~~ 275 (392)
T PRK00369 211 G--FTVDITPHHLLVNGEK--------DCLTKVNPPIRDINERLWLLQALSE--VDAIASDHAPHSSFEKLQ---PYEVC 275 (392)
T ss_pred C--CeEEechhHheeccCC--------CCceEEeCCCCCHHHHHHHHHHHHh--CCEEEeCCCCCCHHHccC---CHhhC
Confidence 6 7789999999998751 2568999999999999999999998 789999999998887743 79999
Q ss_pred CCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCC
Q 009282 387 PNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466 (538)
Q Consensus 387 ~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~ 466 (538)
|+|++|++..+++++. ++..++++++++++++|.|||+++|+. .|.|++|+.||||++|++ .+.+ +...+...|
T Consensus 276 ~~Gi~GlE~~lpll~~-~v~~~~lsl~~~v~~~s~nPA~ilgl~--~g~i~~G~~ADlvi~d~~-~~~~--~~~~sk~~~ 349 (392)
T PRK00369 276 PPGIAALSFTPPFIYT-LVSKGILSIDRAVELISTNPARILGIP--YGEIKEGYRANFTVIQFE-DWRY--STKYSKVIE 349 (392)
T ss_pred CCCCeeHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHhCCC--CCccCCCCccCEEEEeCC-ceeE--ccccccCCC
Confidence 9999999999999885 667888999999999999999999994 388999999999999987 5554 456788899
Q ss_pred CccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 467 ~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
+||+|..+.++|.+||++|++||+++++++..+.|++=+++
T Consensus 350 sp~~G~~l~G~v~~ti~~G~~v~~~~~~~~~~g~G~~~~~~ 390 (392)
T PRK00369 350 TPLDGFELKASVYATIVQGKLAYLEGEVFPVKGINPFGERK 390 (392)
T ss_pred CCCCCCEeeeEEEEEEECCEEEEECCeEecCCCCCCCCccc
Confidence 99999999999999999999999999999888888775544
|
|
| >cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=349.63 Aligned_cols=358 Identities=30% Similarity=0.420 Sum_probs=296.8
Q ss_pred CCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeee
Q 009282 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (538)
Q Consensus 100 G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (538)
|++|+|||||+|+|+..+ +....+++.++.++++++||||+++|....+. ...+.++...+.. ....++++++...
T Consensus 1 G~~vlPG~iD~HvH~r~p--g~~~~ed~~s~t~aA~~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~vd~~~~~~~ 78 (361)
T cd01318 1 GLLILPGVIDIHVHFREP--GLTYKEDFVSGSRAAAAGGVTTVMDMPNTKPPTTTAEALYEKLRLAAAKSVVDYGLYFGV 78 (361)
T ss_pred CCEEecCeeEeeecCCCC--CCCccCcHHHHHHHHHcCCCEEEEECCCCCCCCCcHHHHHHHHHHhccCceeEEEEEEee
Confidence 789999999999999887 77788999999999999999999999743332 4556666555554 3468888888765
Q ss_pred ecCChhhHHHHHHHHHHcCCcEEEEEeeeC-CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc
Q 009282 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYK-GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~-~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~ 256 (538)
... +++.++. +.|..++|.|..+. +....+...+.++++.+. .++.+|+++..............+
T Consensus 79 ~~~-----~~l~~~~-~~~~~g~k~f~~~~~~~~~~~~~~l~~~~~~~~---~~v~~H~E~~~l~~~~~~~~~~~~---- 145 (361)
T cd01318 79 TGS-----EDLEELD-KAPPAGYKIFMGDSTGDLLDDEETLERIFAEGS---VLVTFHAEDEDRLRENRKELKGES---- 145 (361)
T ss_pred cCh-----hhHHHHH-HhhCcEEEEEEecCCCCcCCCHHHHHHHHHhcC---CeEEEeCCChHHHHHHHhhhhhcc----
Confidence 432 3444554 55788899887542 222257788888887764 789999999876554443322222
Q ss_pred ccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccc
Q 009282 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (538)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
.|...+|..+|..++.+.+.++...+.++|+.|+++...++.+..++ ..|+++.++|++.++.+.+.. .+..
T Consensus 146 -~~~~~~P~~aE~~av~r~~~la~~~~~~~hi~Hvs~~~~~~~i~~~k---~~vt~ev~ph~L~l~~~~~~~----~~~~ 217 (361)
T cd01318 146 -AHPRIRDAEAAAVATARALKLARRHGARLHICHVSTPEELKLIKKAK---PGVTVEVTPHHLFLDVEDYDR----LGTL 217 (361)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHhC---CCeEEEeCHHHhhcCHHHHhc----CCCe
Confidence 56677999999999999999999999999999999988767666555 689999999999999887752 3468
Q ss_pred eeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHH
Q 009282 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (538)
Q Consensus 337 ~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal 416 (538)
++++||+|...+++.++++++.|..++++|||.|+....+.. +|+.+++|++|++..++..+ .++..+++++++++
T Consensus 218 ~k~~PPlr~~~d~~aL~~~l~~G~id~i~SDh~P~~~~~k~~---~~~~a~~G~~g~e~~l~~~~-~~v~~~~l~l~~a~ 293 (361)
T cd01318 218 GKVNPPLRSREDRKALLQALADGRIDVIASDHAPHTLEEKRK---GYPAAPSGIPGVETALPLML-TLVNKGILSLSRVV 293 (361)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCEEeeCCCCCCHHHccC---ChhhCCCCCccHHHHHHHHH-HHHHcCCCCHHHHH
Confidence 999999999999999999999999999999999998877653 78899999999998888877 46677789999999
Q ss_pred HHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECC
Q 009282 417 RLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 485 (538)
Q Consensus 417 ~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G 485 (538)
+++|.|||+++|+ +++|+|++|+.|||+|+|++..+.++.+++.+...|+||+|+.+.++|..||++|
T Consensus 294 ~~~t~nPA~~lgl-~~~G~i~~G~~ADlvv~d~~~~~~v~~~~~~s~~~~tp~~G~~l~G~v~~t~~~G 361 (361)
T cd01318 294 RLTSHNPARIFGI-KNKGRIAEGYDADLTVVDLKEERTIRAEEFHSKAGWTPFEGFEVTGFPVMTIVRG 361 (361)
T ss_pred HHHhHHHHHHhCC-CCCCccCCCCcCCEEEEeCCCCEEECHHHccccCCCCCCCCCEEeeEEEEEEeCc
Confidence 9999999999999 4479999999999999999999999999999999999999999999999999998
|
This group contains the archeal members of the DHOase family. |
| >cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=350.72 Aligned_cols=370 Identities=27% Similarity=0.386 Sum_probs=308.0
Q ss_pred ceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc-ccee
Q 009282 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMD 170 (538)
Q Consensus 93 ~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~ 170 (538)
.++||++|++|+||+||+|+|+..+ +....+++.+..++++.+||||+++|....+. .....++...+.... ...+
T Consensus 2 ~~~iD~~g~~vlPG~iD~HvH~~~~--~~~~~e~~~s~s~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd01317 2 AEVIDAEGKILAPGLVDLHVHLREP--GFEYKETLESGAKAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVR 79 (374)
T ss_pred CeEEECCCCEEecCEEeeccccCCC--CccccchHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCcee
Confidence 5789999999999999999999887 55567889999999999999999999754332 455566666555543 5556
Q ss_pred eeeeeeeecCC-hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHH
Q 009282 171 YGFHMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (538)
Q Consensus 171 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~ 249 (538)
+.++......+ .+.++++..+. ..|+..+|.+ +....+...+.++++.+++.|.++.+|+++...... ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~i~~l~-~~G~~~~k~~----~~~~~~~~~l~~~~~~~~~~g~~v~~H~E~~~~~~~---~~~ 151 (374)
T cd01317 80 VLPIGALTKGLKGEELTEIGELL-EAGAVGFSDD----GKPIQDAELLRRALEYAAMLDLPIIVHPEDPSLAGG---GVM 151 (374)
T ss_pred EEEEEEEeeCCCcccHHHHHHHH-HCCcEEEEcC----CcCCCCHHHHHHHHHHHHhcCCeEEEecCChhhhhc---cCc
Confidence 66666555433 23477787776 6788888853 223457888999999999999999999987654331 122
Q ss_pred HcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCC
Q 009282 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS 329 (538)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 329 (538)
..|......+...+|...+...+.+++.+++..+.++++.|+++....+.++.+++.|+.+++++++|+++++++.+..
T Consensus 152 ~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~i~i~h~ss~~~l~~i~~~~~~G~~~~~e~~~h~L~ld~~~~~~- 230 (374)
T cd01317 152 NEGKVASRLGLPGIPPEAETIMVARDLELAEATGARVHFQHLSTARSLELIRKAKAKGLPVTAEVTPHHLLLDDEALES- 230 (374)
T ss_pred cCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCCEEEEecHHHHhcCHHHHhc-
Confidence 2343344445556888888889999999999999999999999988888999899999999999999999999988643
Q ss_pred CcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCC
Q 009282 330 DFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQ 409 (538)
Q Consensus 330 ~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ 409 (538)
.+..++++||+|...+++.++++++.|+.+++||||.|++...++. +|+..+.|++|++..+...++.++..+.
T Consensus 231 ---~~~~~k~~Pplr~~~~~~~l~~~~~~G~i~~igsDh~p~~~~~k~~---~~~~~~~Gi~g~e~~l~~~~~~~~~~~~ 304 (374)
T cd01317 231 ---YDTNAKVNPPLRSEEDREALIEALKDGTIDAIASDHAPHTDEEKDL---PFAEAPPGIIGLETALPLLWTLLVKGGL 304 (374)
T ss_pred ---cCCceEEcCCCCCHHHHHHHHHHHhcCCceEEEcCCCCCCHHHccC---CHhhCCCcHhHHHHHHHHHHHHHHHcCC
Confidence 2467899999999989999999999999999999999998877654 6889999999999999999988888888
Q ss_pred CCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEE
Q 009282 410 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 481 (538)
Q Consensus 410 ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V 481 (538)
++++++++++|.|||+++|+. .|+|++|+.|||+++|.+..+.+..+++.+...|+||+|+.+.++|.+|
T Consensus 305 ~~~~~~~~~~t~npA~~lgl~--~G~l~~G~~ADlvi~d~~~~~~~~~~~~~s~~~~sp~~G~~l~g~~~~t 374 (374)
T cd01317 305 LTLPDLIRALSTNPAKILGLP--PGRLEVGAPADLVLFDPDAEWIVDEETFRSKSKNTPFDGQKLKGRVLAT 374 (374)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--CCcccCCCcCCEEEECCCCCEEEChhhccccCCCCCCCCCEEeEEEEEC
Confidence 999999999999999999994 3999999999999999999999999999999999999999999988764
|
This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth. |
| >cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=336.36 Aligned_cols=332 Identities=35% Similarity=0.484 Sum_probs=281.0
Q ss_pred CeeeccccccccccccccCCCC-ChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeee
Q 009282 101 KFVMPGGIDPHTHLAMEFMGSE-TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAI 177 (538)
Q Consensus 101 ~~v~PGlID~H~H~~~~~~~~~-~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~ 177 (538)
++|+||+||+|+|+..+ +.. ..+++.++.+++++.||||+++|....+. ...+.++...+.. ....++++++...
T Consensus 1 ~~vlPG~iD~HvH~r~p--g~~~~~e~~~t~t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~ 78 (337)
T cd01302 1 LLVLPGFIDIHVHLRDP--GGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGI 78 (337)
T ss_pred CEecCCeeEeeeccCCC--CCCCchhHHHHHHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEec
Confidence 57999999999999887 554 78999999999999999999999754332 3455555544444 3467888888766
Q ss_pred ecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCc--cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009282 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (538)
... +...++.++. +.|+.++|+|..+.... ..+.+.+.+.++.+.+.|+++.+|++
T Consensus 79 ~~~--~~~~el~~l~-~~Gv~g~K~f~~~~~~~~~~~~~~~l~~~~~~~~~~g~~v~~H~E------------------- 136 (337)
T cd01302 79 GPG--DVTDELKKLF-DAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIASRGGPVMVHAE------------------- 136 (337)
T ss_pred cCc--cCHHHHHHHH-HcCCcEEEEEEeccCCCccccCHHHHHHHHHHHHhcCCeEEEeHH-------------------
Confidence 543 3466777776 78999999998654322 56888999999999999999999998
Q ss_pred cccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccc
Q 009282 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (538)
+++.++...+.++++.|+++...++.++.+++.|+.|+++.++|+++++++.+.. .+.
T Consensus 137 ------------------r~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph~L~l~~~~~~~----~~~ 194 (337)
T cd01302 137 ------------------RAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPHHLFLDESMLRL----NGA 194 (337)
T ss_pred ------------------HHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChhhheeCHHHhhC----CCc
Confidence 1234566778999999999999999999999999999999999999999887742 246
Q ss_pred ceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHH
Q 009282 336 KYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (538)
Q Consensus 336 ~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~ea 415 (538)
.++++||+|...+++.+|++++.|..++++|||.|++...+..+ ++|+.+|+|++|++..++..+..+++. +++++++
T Consensus 195 ~~k~~Pplr~~~~~~~L~~~l~~G~id~i~sDh~p~~~~~k~~~-~~~~~a~~G~~g~e~~l~~~~~~~~~~-~i~~~~~ 272 (337)
T cd01302 195 WGKVNPPLRSKEDREALWEGVKNGKIDTIASDHAPHSKEEKESG-KDIWKAPPGFPGLETRLPILLTEGVKR-GLSLETL 272 (337)
T ss_pred eEEEeCCCCCHHHHHHHHHHHhCCCCCEEecCCCCCCHHHhccC-CCcccCCCCcccHHHHHHHHHHHHHhc-CCCHHHH
Confidence 78999999999999999999999999999999999988776542 368899999999999999988766654 6999999
Q ss_pred HHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEE
Q 009282 416 VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 481 (538)
Q Consensus 416 l~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V 481 (538)
++++|.|||+++|+. ..|+|++|+.|||+++|++..+.++++++.++..|+||+|+.+.++|..|
T Consensus 273 ~~~~s~~pA~~~gl~-~~g~i~~G~~ADlvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~t 337 (337)
T cd01302 273 VEILSENPARIFGLY-PKGTIAVGYDADLVIVDPKKEWKVTAEEIESKADWTPFEGMEVTGKPVST 337 (337)
T ss_pred HHHHHHHHHHHcCCC-CCCccccCCcCCEEEEeCCCcEEEcHHHhcccCCCCCcCCcEEEEEEEEC
Confidence 999999999999994 46999999999999999999999999999999999999999999988764
|
Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines. |
| >PRK09061 D-glutamate deacylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=348.32 Aligned_cols=400 Identities=19% Similarity=0.202 Sum_probs=294.4
Q ss_pred cccEEEECcEEEcCCCc--eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 52 SSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~--~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
+++++|+|++|+++++. ..++|+|+||+|++|++... .+.++||++|++|+|||||+|+|.... +
T Consensus 18 ~~~~li~~~~vid~~~~~~~~~~v~I~~G~I~~ig~~~~--~~~~viD~~g~~v~PG~ID~H~H~~~~--~--------- 84 (509)
T PRK09061 18 PYDLVIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAI--EGDRTIDATGLVVAPGFIDLHAHGQSV--A--------- 84 (509)
T ss_pred cCCEEEECcEEEeCCCCeeccceEEEECCEEEEecCCCC--CCCeEEeCCCCEEecCeEeeeeCCCCC--c---------
Confidence 46789999999997764 45799999999999987532 356899999999999999999997643 1
Q ss_pred HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeee-------------------------------
Q 009282 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT------------------------------- 178 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 178 (538)
..+.++..||||++++.. ........++...+. ...++++++.+..
T Consensus 85 ~~~~~~~~GvTtvv~~~~-~~~p~~~~~~~~~~~--~~~vn~~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (509)
T PRK09061 85 AYRMQAFDGVTTALELEA-GVLPVARWYAEQAGE--GRPLNYGASVGWTPARIAVLTGPQAEGTIADFGKALGDPRWQER 161 (509)
T ss_pred cchhhccCCceeEEeecc-CCCCHHHHHHHHHhc--CCcceeehhcCcHHHHHHHhCCcccccccccccccccccccccC
Confidence 145668899999999731 111222223222221 1234555433321
Q ss_pred cCChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009282 179 KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (538)
Q Consensus 179 ~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (538)
..+.+.+.++..+.+ +.|+.+++.+..|. +..+.+++.++++.|+++|.++..|+++.....
T Consensus 162 ~~t~~el~~m~~ll~~al~~Ga~gis~~~~y~--p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~------------- 226 (509)
T PRK09061 162 AATPAELAEILELLEQGLDEGALGIGIGAGYA--PGTGHKEYLELARLAARAGVPTYTHVRYLSNVD------------- 226 (509)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEecCCccC--CCCCHHHHHHHHHHHHHcCCEEEEEecCcccCC-------------
Confidence 011345666766664 57999998765542 345899999999999999999999998653210
Q ss_pred cccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccC------HHHHHHHHHHHHcCCcEEEeccccc--------ccc
Q 009282 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGQRVIGEPVVSG--------LVL 321 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~------~~~~~~i~~~~~~g~~v~~~~~~~~--------~~~ 321 (538)
...+.+.+.++++++...|.++++.|++. ....+.++++++.|+.|+++.+||+ +.+
T Consensus 227 ---------~~~e~~av~~~i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~~~~t~~~~~~l 297 (509)
T PRK09061 227 ---------PRSSVDAYQELIAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYGAGSTVVGAAFF 297 (509)
T ss_pred ---------chhHHHHHHHHHHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcchhhhhhccccc
Confidence 12345778999999999999999999998 6667889999999999999999999 666
Q ss_pred CcccccCCCcccccceee---cCCCCC-------------------------cccHHHHHHHHhcCCceEEeCCCCCCCh
Q 009282 322 DDSWLWHSDFVTAAKYVM---SPPIRA-------------------------SGHNKALQAALATGILQLVGTDHCAFNS 373 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~---~p~~r~-------------------------~~~~~~l~~~l~~Gv~~~lgtD~~~~~~ 373 (538)
++++....+... ...++ .||+|. ..+.+.++..++.+.. +++||+.|...
T Consensus 298 ~~~~~~~~~~~~-~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~p~~-~i~sD~~p~~~ 375 (509)
T PRK09061 298 DPGWLERMGLGY-GSLQWVETGERLLTREELAKLRANDPGGLVLIHFLDEDNPRDRALLDRSVLFPGA-AIASDAMPWTW 375 (509)
T ss_pred CHHHHHHhCCCH-HHheehhcccccCCHHHHHHHhccCCCCeEEEEeccCCCCccchhHHHHhCCCCc-eEecCCccccc
Confidence 555544211110 11245 777777 3447788889998876 99999999887
Q ss_pred hhhhcCccCcccCCCCCcchh------hhHHHHHHHhhhc-CCCCHHHHHHHHhHhHHHHcC-----CCCCCcccccCCC
Q 009282 374 TQKAFGIDDFRKIPNGVNGIE------ERMHLVWDTMVES-GQISVTDYVRLTSTECARIFN-----VYPRKGAILVGSD 441 (538)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~g~~------~~~~~~~~~~~~~-~~ls~~eal~~aT~~~A~~lg-----~~~~~GsI~~Gk~ 441 (538)
..+. +.|...|+|..+.+ ..++..++.++.. +.+|++++++++|.+||++|| + +++|+|++|+.
T Consensus 376 ~~~~---~~~~~~~~~~~~~~~h~r~~~~~~~~l~~~v~~~~~isl~~ai~~~T~~pA~~lg~~~~~l-~~~G~i~~G~~ 451 (509)
T PRK09061 376 SDGT---VYEGDAWPLPEDAVSHPRSAGTFARFLREYVRERKALSLLEAIRKCTLMPAQILEDSVPAM-RRKGRLQAGAD 451 (509)
T ss_pred cccc---cccccccccccCCCCCchhhcchHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccccccc-cCCEeeCCCCC
Confidence 7664 47778888876655 5667777666655 459999999999999999999 8 44799999999
Q ss_pred ccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 442 ADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 442 ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
|||||+|++...... .+.++ +.|+.| |++||++|++||++|++++-..+|++++++
T Consensus 452 ADlvv~D~~~~~~~~--~~~~~--~~~~~g------i~~v~v~G~~v~~~g~~~~~~~~G~~lr~~ 507 (509)
T PRK09061 452 ADIVVFDPETITDRA--TFEDP--NRPSEG------VRHVLVNGVPVVSNGELVRDARPGRPVRRP 507 (509)
T ss_pred cCEEEEchhhccccc--ccccc--CCCCCC------ceEEEECCEEEEECCEecCCCCCCeEecCC
Confidence 999999988643221 12221 344443 889999999999999998656689999875
|
|
| >PRK06687 chlorohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=344.57 Aligned_cols=379 Identities=18% Similarity=0.231 Sum_probs=256.0
Q ss_pred EEEECcEEEcCCCc----eeeeEEEeCCEEEEecCCCCC--CCCceEEecCCCeeeccccccccccccccCC--------
Q 009282 55 ILIKGGTVVNAHHQ----QIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------- 120 (538)
Q Consensus 55 ~~i~n~~vv~~~~~----~~~~V~I~~grI~~Vg~~~~~--~~~~~vID~~G~~v~PGlID~H~H~~~~~~~-------- 120 (538)
.+|+|++|++++.. ++++|+|+||+|++||+.... +...++||+.|++|+|||||+|+|+++....
T Consensus 2 ~~~~n~~vvt~d~~~~~~~~g~VlV~~g~I~aVg~~~~~~~~~~~~viD~~g~~v~PGlIn~H~H~~~~~~rg~~~~~~~ 81 (419)
T PRK06687 2 KVFQHVNIVTCDQDFHVYLDGILAVKDSQIVYVGQDKPAFLEQAEQIIDYQGAWIMPGLVNCHTHSAMTGLRGIRDDSNL 81 (419)
T ss_pred cceEeeEEEEeCCCceEecCcEEEEECCEEEEecCcccccccccCeEEeCCCCEEccceeeeccCCCccccccccCCCCH
Confidence 47999999998752 579999999999999985432 2356899999999999999999999887321
Q ss_pred -------------CCChhhHHHH----HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecCChh
Q 009282 121 -------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV 183 (538)
Q Consensus 121 -------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (538)
..+++..+.. ...++++||||++|+...........+++..+.+.+..+...+.........+
T Consensus 82 ~~wl~~~~~~~~~~~~~~~~~~~~~~a~~e~l~~GvTTv~d~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~~~~~~~~~~ 161 (419)
T PRK06687 82 HEWLNDYIWPAESEFTPDMTTNAVKEALTEMLQSGTTTFNDMYNPNGVDIQQIYQVVKTSKMRCYFSPTLFSSETETTAE 161 (419)
T ss_pred HHHHHhhhccccccCCHHHHHHHHHHHHHHHHhcCcceeehhhccccccHHHHHHHHHHhCCceEeccccccCCcccHHH
Confidence 1122223332 33458999999999864322234555666666665543332222111112233
Q ss_pred hHHHHHHHHHH---cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHHHHcCCCCcccc
Q 009282 184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 184 ~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~-~~~~~~~~~~~~g~~~~~~~ 259 (538)
..++..++.++ .+...++.++.++..+.++++.++++++.|+++|+++.+|+.+.. +.....+ .+|...
T Consensus 162 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~i~~H~~e~~~e~~~~~~---~~g~~~---- 234 (419)
T PRK06687 162 TISRTRSIIDEILKYKNPNFKVMVAPHSPYSCSRDLLEASLEMAKELNIPLHVHVAETKEESGIILK---RYGKRP---- 234 (419)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HHCcCH----
Confidence 34444444422 234568888888888899999999999999999999999995543 3322222 223211
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
+ +.+.....++.++.+.|+...++ ++++++++.|+.+++||.+ ++..+.++
T Consensus 235 ------------~-~~l~~~g~l~~~~~~~H~~~~~~-~~~~~la~~g~~v~~~P~s-------------n~~l~~g~-- 285 (419)
T PRK06687 235 ------------L-AFLEELGYLDHPSVFAHGVELNE-REIERLASSQVAIAHNPIS-------------NLKLASGI-- 285 (419)
T ss_pred ------------H-HHHHHcCCCCCCeEEEEEecCCH-HHHHHHHHcCCeEEECcHH-------------hhhhccCC--
Confidence 1 11222344567888999998887 8899999999999988775 22222221
Q ss_pred cCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCCCHHHHHH
Q 009282 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQISVTDYVR 417 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~ls~~eal~ 417 (538)
.++++++++|+++++|||....+....++ . ++.....+++.. ....++++++|+
T Consensus 286 ----------~p~~~~~~~Gv~v~lGtD~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~l~ 341 (419)
T PRK06687 286 ----------APIIQLQKAGVAVGIATDSVASNNNLDMF-----E---------EGRTAALLQKMKSGDASQFPIETALK 341 (419)
T ss_pred ----------CcHHHHHHCCCeEEEeCCCCCCCCChhHH-----H---------HHHHHHHHhccccCCCccCCHHHHHH
Confidence 22789999999999999975433222111 1 222222222211 122489999999
Q ss_pred HHhHhHHHHcCCCCCCcccccCCCccEEEEcCCC-ceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeec
Q 009282 418 LTSTECARIFNVYPRKGAILVGSDADIIIFNPNS-SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 496 (538)
Q Consensus 418 ~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~ 496 (538)
++|.+||+++|+++++|+|++||.|||+++|.+. +...+ ..++.....|.+. ..+|..|||+|++|+++|++++
T Consensus 342 ~aT~~gA~~lg~~~~~G~l~~G~~ADlv~~d~~~~~~~~p---~~~~~~~lv~~~~--~~~v~~v~v~G~~v~~~g~~~~ 416 (419)
T PRK06687 342 VLTIEGAKALGMENQIGSLEVGKQADFLVIQPQGKIHLQP---QENMLSHLVYAVK--SSDVDDVYIAGEQVVKQGQVLT 416 (419)
T ss_pred HHhHHHHHHcCCCCCCcccCCCccCCEEEECCCCCCCcCC---ccCHHHHhheeCC--CCCccEEEECCEEEEECCeEec
Confidence 9999999999998789999999999999999763 32222 1223333455543 4689999999999999999988
Q ss_pred cC
Q 009282 497 VP 498 (538)
Q Consensus 497 ~~ 498 (538)
.|
T Consensus 417 ~d 418 (419)
T PRK06687 417 VE 418 (419)
T ss_pred CC
Confidence 75
|
|
| >PRK15493 5-methylthioadenosine/S-adenosylhomocysteine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=338.01 Aligned_cols=379 Identities=20% Similarity=0.253 Sum_probs=255.2
Q ss_pred cEEEECcEEEcCCC----ceeeeEEEeCCEEEEecCCCC--CCCCceEEecCCCeeeccccccccccccccCC-------
Q 009282 54 KILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------- 120 (538)
Q Consensus 54 ~~~i~n~~vv~~~~----~~~~~V~I~~grI~~Vg~~~~--~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~------- 120 (538)
+++|+|++|++++. .++++|+|+||+|++||+... .+++.++||++|++|+|||||+|+|+++.+..
T Consensus 2 ~~li~~~~v~t~~~~~~~~~~g~V~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~i~PGlVn~H~H~~~~~~rg~~~~~~ 81 (435)
T PRK15493 2 KTTYVNATIVTMNEQNEVIENGYIIVENDQIIDVNSGEFASDFEVDEVIDMKGKWVLPGLVNTHTHVVMSLLRGIGDDML 81 (435)
T ss_pred eEEEEccEEEEeCCCCcEecCcEEEEECCEEEEEcCccccccCCCCeEEeCCCCEEccceeecccCccchhhhccCCCCC
Confidence 57999999998764 268899999999999998532 23457899999999999999999999865210
Q ss_pred --------------CCChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee-eeecCC
Q 009282 121 --------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWD 181 (538)
Q Consensus 121 --------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 181 (538)
..+++..+. ....++++||||++|+............++..+.+.+..+...... ......
T Consensus 82 l~~wl~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~ 161 (435)
T PRK15493 82 LQPWLETRIWPLESQFTPELAVASTELGLLEMVKSGTTSFSDMFNPIGVDQDAIMETVSRSGMRAAVSRTLFSFGTKEDE 161 (435)
T ss_pred HHHHHHhchhhchhcCCHHHHHHHHHHHHHHHHhCCccEEEccccccccCHHHHHHHHHHcCCcEEEeeeecCCCCCccH
Confidence 112232222 2344689999999998643322233445556666666544332221 111111
Q ss_pred hhhHHHHHHHHHHc-C-CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHHcCCCCccc
Q 009282 182 EVVSDEMEVMVKEK-G-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGITGPEG 258 (538)
Q Consensus 182 ~~~~~~~~~~~~~~-g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~ 258 (538)
.+.+++...+.++. + ...++..+.++..+.++++.++++++.|+++|+++++|+.+ ..+.....+ .+|...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~~---~~g~~~--- 235 (435)
T PRK15493 162 KKAIEEAEKYVKRYYNESGMLTTMVAPHSPYTCSTELLEECARIAVENQTMVHIHLSETEREVRDIEA---QYGKRP--- 235 (435)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhCCCH---
Confidence 22333444443222 2 35578888888888899999999999999999999999954 333322222 223211
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccccee
Q 009282 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (538)
Q Consensus 259 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
++ .+.....++.++.+.|+...++ ++++++++.|+.+++||.+ ++..+.++
T Consensus 236 -------------~~-~l~~~Gll~~~~~~~H~~~l~~-~d~~~la~~g~~v~~~P~s-------------n~~l~~g~- 286 (435)
T PRK15493 236 -------------VE-YAASCGLFKRPTVIAHGVVLND-NERAFLAEHDVRVAHNPNS-------------NLKLGSGI- 286 (435)
T ss_pred -------------HH-HHHHcCCCCCCcEEEEeecCCH-HHHHHHHHcCCeEEEChHH-------------HHHHhcCc-
Confidence 11 1222344567889999999887 8899999999999998875 22222222
Q ss_pred ecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCCCHHHHH
Q 009282 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQISVTDYV 416 (538)
Q Consensus 339 ~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~ls~~eal 416 (538)
.+++.++++|+++++|||+...+....+ |. ++.+...+++.+ ....++++++|
T Consensus 287 -----------~p~~~~~~~Gv~v~lGtD~~~~~~~~d~-----~~---------~~~~a~~~~~~~~~~~~~~~~~~~l 341 (435)
T PRK15493 287 -----------ANVKAMLEAGIKVGIATDSVASNNNLDM-----FE---------EMRIATLLQKGIHQDATALPVETAL 341 (435)
T ss_pred -----------ccHHHHHHCCCeEEEccCccccCCCcCH-----HH---------HHHHHHHHHhhccCCCCcCCHHHHH
Confidence 2378999999999999997543322211 11 333333333322 23469999999
Q ss_pred HHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCC-ceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeee
Q 009282 417 RLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS-SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495 (538)
Q Consensus 417 ~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~ 495 (538)
+++|.+||+++|++ +.|+|++||.||||++|.+. +...+. .++.....|.+. ...|..|||+|++|+++|+++
T Consensus 342 ~~aT~~gA~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~p~---~d~~~~lv~~~~--~~~V~~v~V~G~~v~~~g~~~ 415 (435)
T PRK15493 342 TLATKGAAEVIGMK-QTGSLEVGKCADFITIDPSNKPHLQPA---DEVLSHLVYAAS--GKDISDVIINGKRVVWNGECK 415 (435)
T ss_pred HHHhHHHHHHcCCC-CCCccCCCCcCCEEEEcCCCCCCcCCc---cChHHhEEEeCC--CCCccEEEECCEEEEECCeEC
Confidence 99999999999994 58999999999999999653 322222 222233344432 357999999999999999999
Q ss_pred ccC
Q 009282 496 VVP 498 (538)
Q Consensus 496 ~~~ 498 (538)
+.|
T Consensus 416 ~~d 418 (435)
T PRK15493 416 TLD 418 (435)
T ss_pred CCC
Confidence 987
|
|
| >cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=328.54 Aligned_cols=356 Identities=22% Similarity=0.257 Sum_probs=258.8
Q ss_pred cEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 54 ~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
+++|+|++|+++.+ ...++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|+..+ ... ....
T Consensus 1 d~~i~n~~v~~~~~~~~~~~~i~I~~g~I~~i~~~~~-~~~~~~iD~~G~~v~PG~iD~H~H~~~~--~~~-----~~~~ 72 (415)
T cd01297 1 DLVIRNGTVVDGTGAPPFTADVGIRDGRIAAIGPILS-TSAREVIDAAGLVVAPGFIDVHTHYDGQ--VFW-----DPDL 72 (415)
T ss_pred CEEEECCEEECCCCCccccceEEEECCEEEEEecCCC-CCCCeEEECCCCEEccCEeeeeecCCcc--ccc-----Ccch
Confidence 47899999999865 357899999999999987543 2357899999999999999999999765 211 1226
Q ss_pred HHHHhCCcEEEecccCC---CCCCH------H-----------------HHHHHHHHHh-cc-cceeee---eeeeee--
Q 009282 132 AAALAGGTTMHIDFVIP---INGSL------T-----------------AGFEAYEKKA-KN-SCMDYG---FHMAIT-- 178 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~---~~~~~------~-----------------~~~~~~~~~~-~~-~~~~~~---~~~~~~-- 178 (538)
+.++++||||++++... ..... . +.++.+.+.. .. ..++++ ++....
T Consensus 73 ~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~l~~~ 152 (415)
T cd01297 73 RPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEGLVALGEGLPWGWATFAEYLDALEARPPAVNVAALVGHAALRRA 152 (415)
T ss_pred hhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhcccccccccCCCCCCHHHHHHHHHhcCCCcCeeeccCcHHHHHH
Confidence 77899999999987431 11100 0 2233334433 22 356666 443332
Q ss_pred -------cCChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHH
Q 009282 179 -------KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM 248 (538)
Q Consensus 179 -------~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~ 248 (538)
..+++.++++.++.+ +.|+.++|.+..|......+.+++.++++.|+++|.++.+|+++...
T Consensus 153 ~~g~~~~~~~~~~~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~-------- 224 (415)
T cd01297 153 VMGLDAREATEEELAKMRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGD-------- 224 (415)
T ss_pred HhCcCCCCCCHHHHHHHHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccc--------
Confidence 234456677777652 47999999877664323568999999999999999999999987641
Q ss_pred HHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHH---------HHHHHHHHHcCCcEEEecccccc
Q 009282 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA---------MEEIAKARKAGQRVIGEPVVSGL 319 (538)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~---------~~~i~~~~~~g~~v~~~~~~~~~ 319 (538)
.+.+.+.++++++...+.++++.|++.... .+.++++++.|+.|+++.+++++
T Consensus 225 ------------------~e~~av~~~~~~a~~~g~r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~ 286 (415)
T cd01297 225 ------------------SILEALDELLRLGRETGRPVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGA 286 (415)
T ss_pred ------------------cHHHHHHHHHHHHHHhCCCEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCC
Confidence 234678899999999999999999998776 78888899999999999998655
Q ss_pred ccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHH
Q 009282 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~ 399 (538)
.+ ...++.+++. ..++++||+.+.+. +....+ + .+..
T Consensus 287 ~~---------------------------~~~~~~l~~~-~~~~i~SDh~~~~~--------~~~~~~----~---~~~~ 323 (415)
T cd01297 287 GS---------------------------EDDVRRIMAH-PVVMGGSDGGALGK--------PHPRSY----G---DFTR 323 (415)
T ss_pred Cc---------------------------HHHHHHHHcC-CCceeeeCCCcCCC--------CCcchh----C---CHHH
Confidence 43 1335666666 89999999987531 011111 1 1444
Q ss_pred HHHHhhhc-CCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEE
Q 009282 400 VWDTMVES-GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKV 478 (538)
Q Consensus 400 ~~~~~~~~-~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 478 (538)
.+...+.. +.+|++++++++|.|||+++|+. ++|+|++|+.|||||+|++.....+. +.++... ...|
T Consensus 324 ~l~~~~~~~~~~~~~~~~~~~t~~pA~~~gl~-~~G~l~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~--~~~v 392 (415)
T cd01297 324 VLGHYVRERKLLSLEEAVRKMTGLPARVFGLA-DRGRIAPGYRADIVVFDPDTLADRAT--------FTRPNQP--AEGI 392 (415)
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHHHhCCC-CCceeCCCCCCCEEEEcccccccccc--------hhhhccC--CCCc
Confidence 44444433 35999999999999999999995 57999999999999999886544332 1122211 3469
Q ss_pred EEEEECCEEEEECCeeecc
Q 009282 479 EVTIAGGRVVWENDELNVV 497 (538)
Q Consensus 479 ~~V~v~G~~V~~~~~~~~~ 497 (538)
.+||++|++||+++++++.
T Consensus 393 ~~viv~G~~v~~~~~~~~~ 411 (415)
T cd01297 393 EAVLVNGVPVVRDGAFTGA 411 (415)
T ss_pred eEEEECCEEEEECCEECCC
Confidence 9999999999999998864
|
|
| >PRK07228 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=329.11 Aligned_cols=380 Identities=21% Similarity=0.285 Sum_probs=245.9
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-CC--------
Q 009282 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------- 121 (538)
Q Consensus 54 ~~~i~n~~vv~~~~---~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~-------- 121 (538)
+++|+|++|+++++ .++++|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+...+. +.
T Consensus 2 ~~~i~~~~vi~~~~~~~~~~g~V~I~dg~I~~vg~~~~~~~~~~vID~~G~~vlPGlId~H~H~~~~~~~g~~~~~~~~~ 81 (445)
T PRK07228 2 TILIKNAGIVTMNAKREIVDGDVLIEDDRIAAVGDRLDLEDYDDHIDATGKVVIPGLIQGHIHLCQTLFRGIADDLELLD 81 (445)
T ss_pred eEEEEccEEEecCCCcEecccEEEEECCEEEEecCCcccCcCCeEEeCCCCEEecCEEecccCCccccceeccCCCCHHH
Confidence 58999999999874 4689999999999999986543336789999999999999999999986521 11
Q ss_pred ------------CChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee-------eee
Q 009282 122 ------------ETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-------AIT 178 (538)
Q Consensus 122 ------------~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 178 (538)
.+++.... ....++++||||++|+.... .....+++..+.+.+......+.. ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~d~~~~~--~~~~~~~a~~~~g~r~~~~~~~~~~~~~~p~~~~ 159 (445)
T PRK07228 82 WLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIVDMESVH--HTDSAFEAAGESGIRAVLGKVMMDYGDDVPEGLQ 159 (445)
T ss_pred HHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEEcccccc--ChHHHHHHHHHcCCeEEEecceecCCcCCCcccc
Confidence 11222221 23345799999999986432 123445555555544322211110 001
Q ss_pred cCChhhHHHHHHHHHHc-CCc--EEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCC
Q 009282 179 KWDEVVSDEMEVMVKEK-GIN--SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGIT 254 (538)
Q Consensus 179 ~~~~~~~~~~~~~~~~~-g~~--~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~ 254 (538)
....+.+++...+.+.. |.. .+...+.+.....++.+.++++++.|+++|+++++|+.+. .......+ ..|..
T Consensus 160 ~~~~~~l~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~---~~g~~ 236 (445)
T PRK07228 160 EDTEASLAESVRLLEKWHGADNGRIRYAFTPRFAVSCTEELLRGVRDLADEYGVRIHTHASENRGEIETVEE---ETGMR 236 (445)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhCCC
Confidence 11123344444444332 332 3333344445556789999999999999999999999543 32221111 22322
Q ss_pred CcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccc
Q 009282 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (538)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
. ++ .+......+.++++.|+...++ +.++++++.|+.++.||... +..+
T Consensus 237 ~----------------~~-~l~~~g~~~~~~~l~H~~~~~~-~~~~~~~~~g~~v~~~P~~~-------------~~~~ 285 (445)
T PRK07228 237 N----------------IH-YLDEVGLTGEDLILAHCVWLDE-EEREILAETGTHVTHCPSSN-------------LKLA 285 (445)
T ss_pred H----------------HH-HHHHCCCCCCCcEEEEEecCCH-HHHHHHHHcCCeEEEChHHh-------------hhcc
Confidence 1 11 1111223467889999998776 78899999999998887641 1111
Q ss_pred cceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCCCH
Q 009282 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQISV 412 (538)
Q Consensus 335 ~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~ls~ 412 (538)
.. ..+++++++.|+++++|||+.+.+.... +|. +..+...+.+.. ....+++
T Consensus 286 ~~------------~~p~~~~~~~Gv~v~lGtD~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~s~ 339 (445)
T PRK07228 286 SG------------IAPVPDLLERGINVALGADGAPCNNTLD-----PFT---------EMRQAALIQKVDRLGPTAMPA 339 (445)
T ss_pred cc------------cCcHHHHHHCCCeEEEcCCCCccCCCcc-----HHH---------HHHHHHHHhhhccCCCcccCH
Confidence 11 1338999999999999999865432211 111 222222222221 1135999
Q ss_pred HHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECC
Q 009282 413 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEND 492 (538)
Q Consensus 413 ~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~ 492 (538)
+++|+++|.|||+++|+++++|+|++||.|||||+|.+.+...+.+. .++.....+... ..+|..||++|++||++|
T Consensus 340 ~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~p~~~-~~~~~~~~~~~~--~~~v~~v~v~G~~v~~~g 416 (445)
T PRK07228 340 RTVFEMATLGGAKAAGFEDEIGSLEEGKKADLAILDLDGLHATPSHG-VDVLSHLVYAAH--GSDVETTMVDGKIVMEDG 416 (445)
T ss_pred HHHHHHHHHHHHHHhCCCCCccccCCCCccCEEEEcCCCcccCCCcc-cCHHHHhheeCC--CCCeeEEEECCEEEEECC
Confidence 99999999999999999888999999999999999998765544320 011111112221 357999999999999999
Q ss_pred eeeccC
Q 009282 493 ELNVVP 498 (538)
Q Consensus 493 ~~~~~~ 498 (538)
+++..+
T Consensus 417 ~~~~~d 422 (445)
T PRK07228 417 ELTTID 422 (445)
T ss_pred eEccCC
Confidence 999876
|
|
| >cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=328.05 Aligned_cols=372 Identities=27% Similarity=0.372 Sum_probs=243.5
Q ss_pred EEEECcEEEcCCC---ceeeeEEEeCCEEEEecCCCCCC--CCceEEecCCCeeeccccccccccccccC-C--------
Q 009282 55 ILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-------- 120 (538)
Q Consensus 55 ~~i~n~~vv~~~~---~~~~~V~I~~grI~~Vg~~~~~~--~~~~vID~~G~~v~PGlID~H~H~~~~~~-~-------- 120 (538)
++|+|++|+++++ ..+++|+|+||||++|++..+.+ ++.++||++|++|+|||||+|+|+..+.. +
T Consensus 1 ~~i~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~i~PGlid~H~Hl~~~~~~~~~~~~~~~ 80 (411)
T cd01298 1 ILIRNGTIVTTDPRRVLEDGDVLVEDGRIVAVGPALPLPAYPADEVIDAKGKVVMPGLVNTHTHLAMTLLRGLADDLPLM 80 (411)
T ss_pred CeEEeeEEEEeCCcceeecceEEEECCEEEEecCccccccCCcCeEEeCCCCEEccCccccccchhhHHhhcccCCCCHH
Confidence 4799999999852 46899999999999999865542 46889999999999999999999875311 1
Q ss_pred ------------CCChhhHHHH----HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeee---cCC
Q 009282 121 ------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT---KWD 181 (538)
Q Consensus 121 ------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 181 (538)
..++++++.. +..++++||||++|+..... ....+.....+.+..+...+..... ...
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~---~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~ 157 (411)
T cd01298 81 EWLKDLIWPLERLLTEEDVYLGALLALAEMIRSGTTTFADMYFFYP---DAVAEAAEELGIRAVLGRGIMDLGTEDVEET 157 (411)
T ss_pred HHHHhhhhhhhhcCCHHHHHHHHHHHHHHHHhcCccEEECccccch---HHHHHHHHHhCCeEEEEcceecCCCcccccH
Confidence 1223444332 34457899999999865432 2333334344444333222211111 111
Q ss_pred hhhHHHHHHHHHH---cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCCCcc
Q 009282 182 EVVSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPE 257 (538)
Q Consensus 182 ~~~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~~~~ 257 (538)
.+..++...+.++ .|.+.+|+++.+++...++.+.+.++++.|+++|+++.+|+.+. .......+ ..|...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~~~~~-- 232 (411)
T cd01298 158 EEALAEAERLIREWHGAADGRIRVALAPHAPYTCSDELLREVAELAREYGVPLHIHLAETEDEVEESLE---KYGKRP-- 232 (411)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEeCCCCccCCHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHH---HhCCCH--
Confidence 2334444444422 24678898888776667789999999999999999999998443 32222221 122210
Q ss_pred cccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccce
Q 009282 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (538)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
++.+. .....+.++.+.|+....+ +.++++++.|+.++.||.... ..+..
T Consensus 233 --------------~~~~~-~~~~~~~~~~i~H~~~l~~-~~~~~l~~~gi~~~~~p~~~~-------------~~~~~- 282 (411)
T cd01298 233 --------------VEYLE-ELGLLGPDVVLAHCVWLTD-EEIELLAETGTGVAHNPASNM-------------KLASG- 282 (411)
T ss_pred --------------HHHHH-HcCCCCCCeEEEEecCCCH-HHHHHHHHcCCeEEEChHHhh-------------hhhhC-
Confidence 11111 1223356778999998876 889999999998887765311 11111
Q ss_pred eecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh--cCCCCHHHH
Q 009282 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE--SGQISVTDY 415 (538)
Q Consensus 338 ~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~--~~~ls~~ea 415 (538)
. .+++.++++|+++++|||+....... +++. +..+......... ..+++++++
T Consensus 283 --~---------~~~~~~~~~Gv~~~~GsD~~~~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~~~~~a 337 (411)
T cd01298 283 --I---------APVPEMLEAGVNVGLGTDGAASNNNL-----DMFE---------EMRLAALLQKLAHGDPTALPAEEA 337 (411)
T ss_pred --C---------CCHHHHHHCCCcEEEeCCCCccCCCc-----CHHH---------HHHHHHHHhccccCCCCcCCHHHH
Confidence 1 22789999999999999976432111 0111 1222222211111 125999999
Q ss_pred HHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeee
Q 009282 416 VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495 (538)
Q Consensus 416 l~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~ 495 (538)
|+++|.|||+++|++ ++|+|++||.|||||+|.+.++.++.+++.+.. .+... ..+|..||++|++||++|+++
T Consensus 338 l~~~T~~~A~~lg~~-~~G~i~~G~~ADlvv~d~~~~~~~~~~~~~~~~---~~~~~--~~~v~~v~~~G~~v~~~~~~~ 411 (411)
T cd01298 338 LEMATIGGAKALGLD-EIGSLEVGKKADLILIDLDGPHLLPVHDPISHL---VYSAN--GGDVDTVIVNGRVVMEDGELL 411 (411)
T ss_pred HHHHHhhHHHHhCCc-cCCCcCCCccCCEEEEeCCCCccCCccchhhHh---eEecC--CCCeeEEEECCEEEEECCEeC
Confidence 999999999999996 789999999999999999877666544433222 11111 458999999999999999875
|
Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD. |
| >PRK09045 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=325.24 Aligned_cols=378 Identities=19% Similarity=0.211 Sum_probs=250.5
Q ss_pred cccEEEECcEEEcCCC----ceeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCeeeccccccccccccccC-CC--
Q 009282 52 SSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-- 121 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~----~~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~-- 121 (538)
+.+++|+|+.|++++. .++++|+|+||+|++||+.... +++.++||++|++|+|||||+|+|+..... +.
T Consensus 6 ~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~g~~~ 85 (443)
T PRK09045 6 PVDLLIEARWIVPVEPAGVVLEDHAVAIRDGRIVAILPRAEARARYAAAETVELPDHVLIPGLINAHTHAAMSLLRGLAD 85 (443)
T ss_pred cccEEEEccEEEEeCCCceEeeccEEEEECCEEEEecCcccccccCCcceEEeCCCCEEecCEeccccChhhHhhhhccC
Confidence 4589999999999763 2688999999999999986433 235789999999999999999999986521 10
Q ss_pred -------------------CChhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee-e-
Q 009282 122 -------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-A- 176 (538)
Q Consensus 122 -------------------~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 176 (538)
.+++..+ .....++++||||++|+... .....+...+.+.+..+...... +
T Consensus 86 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~~~~~~G~R~~~~~~~~~~~~ 161 (443)
T PRK09045 86 DLPLMTWLQDHIWPAEGAWVSEEFVRDGTLLAIAEMLRGGTTCFNDMYFF----PEAAAEAAHQAGMRAQIGMPVLDFPT 161 (443)
T ss_pred CCCHHHHHHhhhhhhhhccCCHHHHHHHHHHHHHHHHhcCCcEEEecccc----HHHHHHHHHHcCCeEEEecccccCCC
Confidence 1122221 22345689999999987421 12234444444444333222111 0
Q ss_pred -eecCChhhHHHHHHHHH-HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHHcCC
Q 009282 177 -ITKWDEVVSDEMEVMVK-EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGI 253 (538)
Q Consensus 177 -~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~-~~~~~~~~~~~~~~g~ 253 (538)
.....++.+++...+.+ ..+.+.+++.+.+++.+.++.+.++++++.|+++|+++.+|+.. ..+....+ ...|.
T Consensus 162 ~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~---~~~g~ 238 (443)
T PRK09045 162 AWASDADEYLAKGLELHDQWRHHPLISTAFAPHAPYTVSDENLERIRTLAEQLDLPIHIHLHETAQEIADSL---KQHGQ 238 (443)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEeecCcHHHHHHHH---HHhCC
Confidence 01111233333333332 24567788888888888889999999999999999999999953 33322222 22332
Q ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccc
Q 009282 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
. .++.+. .....+.++.+.|+...++ +.++++++.|+.++.||... +..
T Consensus 239 ~----------------~~~~l~-~~g~l~~r~~~~H~~~l~~-~~~~~la~~g~~i~~~P~~~-------------~~~ 287 (443)
T PRK09045 239 R----------------PLARLA-RLGLLGPRLIAVHMTQLTD-AEIALLAETGCSVVHCPESN-------------LKL 287 (443)
T ss_pred C----------------HHHHHH-HcCCCCCCeEEEEecCCCH-HHHHHHHHcCCeEEECHHHH-------------hhh
Confidence 1 122222 2345567888999998876 88999999999998887641 111
Q ss_pred ccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCCC
Q 009282 334 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQIS 411 (538)
Q Consensus 334 ~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~ls 411 (538)
+.. ..+++.+++.|+++++|||+.+.+...+ ++. ++.+...+.+.. ...+++
T Consensus 288 ~~~------------~~~~~~l~~~Gv~v~lGtD~~~~~~~~~-----~~~---------~~~~a~~~~~~~~~~~~~~~ 341 (443)
T PRK09045 288 ASG------------FCPVAKLLQAGVNVALGTDGAASNNDLD-----LFG---------EMRTAALLAKAVAGDATALP 341 (443)
T ss_pred ccC------------CCcHHHHHHCCCeEEEecCCCCCCCCcc-----HHH---------HHHHHHHHHhhccCCCCcCC
Confidence 111 1237899999999999999764322211 111 222222222222 134599
Q ss_pred HHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 412 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 412 ~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
++++|+++|.|||+++|+++++|+|++||.||||++|.+++...+.. ++....++... ..+|..||++|++||++
T Consensus 342 ~~~al~~~T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~p~~---~~~~~lv~~~~--~~~v~~v~v~G~~v~~~ 416 (443)
T PRK09045 342 AHTALRMATLNGARALGLDDEIGSLEPGKQADLVAVDLSGLETQPVY---DPVSQLVYAAG--REQVSHVWVAGKQLLDD 416 (443)
T ss_pred HHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEeCCCCCcCCcc---ChHhHhhEeCC--CCCccEEEECCEEEEEC
Confidence 99999999999999999988899999999999999998876332211 11112233322 45899999999999999
Q ss_pred CeeeccC
Q 009282 492 DELNVVP 498 (538)
Q Consensus 492 ~~~~~~~ 498 (538)
|++++.|
T Consensus 417 g~~~~~d 423 (443)
T PRK09045 417 RELTTLD 423 (443)
T ss_pred CcCCCCC
Confidence 9999987
|
|
| >PRK06380 metal-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=319.81 Aligned_cols=376 Identities=22% Similarity=0.299 Sum_probs=246.3
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-C---------
Q 009282 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--------- 120 (538)
Q Consensus 54 ~~~i~n~~vv~~~~---~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~--------- 120 (538)
+++|+|++|++++. ..+++|+|+||+|++||+... .+.++||++|++|+|||||+|+|++.... +
T Consensus 2 ~~li~~~~v~~~~~~~~~~~~~v~i~~g~I~~ig~~~~--~~~~viD~~g~~v~PG~Vd~H~Hl~~~~~rg~~~~~~l~~ 79 (418)
T PRK06380 2 SILIKNAWIVTQNEKREILQGNVYIEGNKIVYVGDVNE--EADYIIDATGKVVMPGLINTHAHVGMTASKGLFDDVDLEE 79 (418)
T ss_pred eEEEEeeEEEECCCCceeeeeeEEEECCEEEEecCCCC--CCCEEEECCCCEEccCEEeeccCCCccccCCcccCCCHHH
Confidence 47999999998763 358899999999999998543 24689999999999999999999986621 1
Q ss_pred ----------CCChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeee-eecCChhhH
Q 009282 121 ----------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-ITKWDEVVS 185 (538)
Q Consensus 121 ----------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 185 (538)
..++++++. ....++++||||++|+... .....++..+.+.+.++.+..... .........
T Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~~d~~~~----~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~~ 155 (418)
T PRK06380 80 FLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAFVDLYYS----EDIIAKAAEELGIRAFLSWAVLDEEITTQKGDPL 155 (418)
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEEEccccC----hHHHHHHHHHhCCeEEEecccccCCcccccchHH
Confidence 123333322 2345689999999998532 123344555555554443322111 000111122
Q ss_pred HHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCC
Q 009282 186 DEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264 (538)
Q Consensus 186 ~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (538)
.+...+.++ .+...+...+.+++...++.+.++++++.|+++|+++++|+.+... +......+.|...
T Consensus 156 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~--~~~~~~~~~g~~~--------- 224 (418)
T PRK06380 156 NNAENFIREHRNEELVTPSIGVQGIYVANDETYLKAKEIAEKYDTIMHMHLSETRK--EVYDHVKRTGERP--------- 224 (418)
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCcHH--HHHHHHHHhCCCH---------
Confidence 233333322 2234466666777888889999999999999999999999965421 2222333445421
Q ss_pred chHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCC
Q 009282 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344 (538)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 344 (538)
++.+ ......+.++.+.|+.+.+. +.++++++.|+.++.||.+ ++..+.. ..
T Consensus 225 -------ie~~-~~~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~~P~s-------------n~~l~~~--g~---- 276 (418)
T PRK06380 225 -------VEHL-EKIGFLNSKLIAAHCVWATY-HEIKLLSKNGVKVSWNSVS-------------NFKLGTG--GS---- 276 (418)
T ss_pred -------HHHH-HHCCCCCCCeEEEEeecCCH-HHHHHHHHcCCEEEECHHH-------------HHhhccC--CC----
Confidence 2221 22234567888999998876 8899999999999988875 2211110 01
Q ss_pred CcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCCCHHHHHHHHhHh
Q 009282 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQISVTDYVRLTSTE 422 (538)
Q Consensus 345 ~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~ls~~eal~~aT~~ 422 (538)
.+++++++.|+++++|||....+....+ |. ++.+.....+.. ....++++++|+++|.|
T Consensus 277 -----~p~~~~~~~Gv~v~lGTD~~~~~~~~d~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~ 337 (418)
T PRK06380 277 -----PPIPEMLDNGINVTIGTDSNGSNNSLDM-----FE---------AMKFSALSVKNERWDASIIKAQEILDFATIN 337 (418)
T ss_pred -----CcHHHHHHCCCeEEEcCCCCcCCCCcCH-----HH---------HHHHHHHHhhhccCCCCcCCHHHHHHHHHHH
Confidence 2288999999999999997533222111 11 222221111111 12248999999999999
Q ss_pred HHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 423 CARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 423 ~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
+|++||+ +.|+|++||+||||++|.+.+...+.. ..++.....+.+. ..+|..||++|++|+++|++++.|
T Consensus 338 gA~~lg~--~~G~l~~G~~ADlvv~d~~~~~~~p~~-~~~~~~~lv~~~~--~~~v~~v~v~G~~v~~~g~~~~~d 408 (418)
T PRK06380 338 AAKALEL--NAGSIEVGKLADLVILDARAPNMIPTR-KNNIVSNIVYSLN--PLNVDHVIVNGKILKENGRLNGFN 408 (418)
T ss_pred HHHHhCC--CCCccCCCccCCEEEEeCCCCccCCCC-ccChHHheeecCC--CCceeEEEECCEEEEECCeECccC
Confidence 9999999 379999999999999998866554421 1112222223322 357999999999999999999987
|
|
| >cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=302.21 Aligned_cols=339 Identities=24% Similarity=0.342 Sum_probs=269.2
Q ss_pred CeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeee
Q 009282 101 KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAIT 178 (538)
Q Consensus 101 ~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 178 (538)
.+|+|||||.|+|+..+ +....+++.++.++++++||||++||....+. ...+.++...+... ...++++++....
T Consensus 2 ~~vlPG~ID~HvH~r~p--g~~~~ed~~sgs~AAa~GGvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~ 79 (344)
T cd01316 2 TIRLPGLIDVHVHLREP--GATHKEDFASGTKAALAGGFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGAT 79 (344)
T ss_pred eEEeCCeEEeeeccCCC--CcCCcChHHHHHHHHHhCCCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeec
Confidence 47999999999999988 77789999999999999999999999654332 45666666666554 4688999887665
Q ss_pred cCChhhHHHHHHHHHHcCCcEEEEEeeeCCCc-cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcc
Q 009282 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (538)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~-~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~ 257 (538)
..+.+ ++.++. . ...++|.|..+.... ..+..........++..+.++..|++..
T Consensus 80 ~~~~~---~~~~l~-~-~~~g~k~f~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~e~~------------------- 135 (344)
T cd01316 80 STNAA---TVGELA-S-EAVGLKFYLNETFSTLILDKITAWASHFNAWPSTKPIVTHAKSQ------------------- 135 (344)
T ss_pred CCCHH---HHHHHH-h-ccCeEEEEECCCCCCCccchHHHHHHHHHhcccCCCeEEehhhH-------------------
Confidence 54433 233333 2 256788876432111 0111111122233444466777666432
Q ss_pred cccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccce
Q 009282 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (538)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.+.+++.+++..+.++|+.|+++...++.++..++.|+.|+++.++|||.++++.+.. ..+
T Consensus 136 -------------~~~~~l~la~~~g~~lhi~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL~l~~~~~~~------~~~ 196 (344)
T cd01316 136 -------------TLAAVLLLASLHNRSIHICHVSSKEEINLIRLAKARGLKVTCEVSPHHLFLSQDDLPR------GQY 196 (344)
T ss_pred -------------HHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHCCCcEEEEechHHeeccHHHhhc------CCc
Confidence 3455678888899999999999999999999999999999999999999999987643 367
Q ss_pred eecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHH
Q 009282 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (538)
Q Consensus 338 ~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~ 417 (538)
+++||+|..++++++|+++. ...+++|||.|+....|.. + ..|+|++|++..++..+. ++..+++++.++++
T Consensus 197 k~~PPLR~~~dr~aL~~~l~--~id~i~SDHaP~~~~~K~~---~--~a~~G~~g~e~~lpl~~~-~v~~~~i~l~~l~~ 268 (344)
T cd01316 197 EVRPFLPTREDQEALWENLD--YIDCFATDHAPHTLAEKTG---N--KPPPGFPGVETSLPLLLT-AVHEGRLTIEDIVD 268 (344)
T ss_pred eeCCCCcCHHHHHHHHHHHh--cCCEEEcCCCCCCHHHhcC---C--CCCCCcccHHHHHHHHHH-HHHcCCCCHHHHHH
Confidence 89999999999999999995 4789999999998776642 2 789999999999999995 78888899999999
Q ss_pred HHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeecc
Q 009282 418 LTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497 (538)
Q Consensus 418 ~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~ 497 (538)
..+.|||++||+.. + .+|||++|++..|.++.+.+.+...|+||+|+.+.++|..||++|++||++|+++..
T Consensus 269 ~~s~nPAk~~gl~~-------~-~~~lvi~d~~~~~~v~~~~~~s~~~~sp~~G~~l~G~v~~ti~rG~~v~~~g~~~~~ 340 (344)
T cd01316 269 RLHTNPKRIFNLPP-------Q-SDTYVEVDLDEEWTIPKNPLQSKKGWTPFEGKKVKGKVQRVVLRGETAFIDGEIVAP 340 (344)
T ss_pred HHHHhHHHHhCCCC-------C-CCCEEEEeCCCcEEEChhhccccCCCCCCCCCEEeeEEEEEEECCEEEEECCEEccC
Confidence 99999999999943 2 347999999999999999999999999999999999999999999999999998765
Q ss_pred CCC
Q 009282 498 PGS 500 (538)
Q Consensus 498 ~~~ 500 (538)
.+.
T Consensus 341 ~~~ 343 (344)
T cd01316 341 PGF 343 (344)
T ss_pred CCC
Confidence 543
|
Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate. |
| >PRK08204 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=322.98 Aligned_cols=373 Identities=21% Similarity=0.274 Sum_probs=239.7
Q ss_pred ccEEEECcEEEcCCC----ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC---------
Q 009282 53 SKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM--------- 119 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~----~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~--------- 119 (538)
.+++|+|++|+++++ ..+++|+|+||+|++||+..+.+ +.++||++|++|+|||||+|+|+.....
T Consensus 2 ~~~li~~~~v~~~~~~~~~~~~~~v~V~~g~I~~Vg~~~~~~-~~~viD~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~ 80 (449)
T PRK08204 2 KRTLIRGGTVLTMDPAIGDLPRGDILIEGDRIAAVAPSIEAP-DAEVVDARGMIVMPGLVDTHRHTWQSVLRGIGADWTL 80 (449)
T ss_pred CcEEEECcEEEecCCCCCccccceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEecCEEeeeeccchhhhccccCCCcH
Confidence 457899999998653 26889999999999999865433 5689999999999999999999864311
Q ss_pred ------------CCCChhhHH----HHHHHHHhCCcEEEecccCCCC--CCHHHHHHHHHHHhcccceeeeeeeeeec--
Q 009282 120 ------------GSETIDDFF----SGQAAALAGGTTMHIDFVIPIN--GSLTAGFEAYEKKAKNSCMDYGFHMAITK-- 179 (538)
Q Consensus 120 ------------~~~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 179 (538)
...++++.+ .....++++||||++++..... ......++...+.+.+..+..+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~L~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~G~r~~~~~~~~~~~~~~~ 160 (449)
T PRK08204 81 QTYFREIHGNLGPMFRPEDVYIANLLGALEALDAGVTTLLDWSHINNSPEHADAAIRGLAEAGIRAVFAHGSPGPSPYWP 160 (449)
T ss_pred HHHHHhhcccccccCCHHHHHHHHHHHHHHHHhcCCeEEeecccccCChhHHHHHHHHHHHcCCeEEEEccccCCCCCCC
Confidence 011222221 2334678999999999764332 12334455555555443322221111010
Q ss_pred --CChhhHHHHHHHHHH--cCCc-EEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCC
Q 009282 180 --WDEVVSDEMEVMVKE--KGIN-SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGIT 254 (538)
Q Consensus 180 --~~~~~~~~~~~~~~~--~g~~-~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~ 254 (538)
...+...+...+.++ .+.+ .+......++....+++.++++++.|+++|+++.+|+.+.... .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~---------~~~- 230 (449)
T PRK08204 161 FDSVPHPREDIRRVKKRYFSSDDGLLTLGLAIRGPEFSSWEVARADFRLARELGLPISMHQGFGPWG---------ATP- 230 (449)
T ss_pred cchhhhhHHHHHHHHHhhccCCCCceEEEEecCCcccCCHHHHHHHHHHHHHcCCcEEEEEcCCCcc---------cCC-
Confidence 111223333333321 2222 3344444555566678999999999999999999999543110 000
Q ss_pred CcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccc
Q 009282 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (538)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
..++.+.+ ....+.++.+.|+...++ +.++++++.|+.+++||... +..+
T Consensus 231 ---------------~~~~~l~~-~g~~~~~~~i~H~~~~~~-~~~~~la~~g~~v~~~P~~~-------------~~~g 280 (449)
T PRK08204 231 ---------------RGVEQLHD-AGLLGPDLNLVHGNDLSD-DELKLLADSGGSFSVTPEIE-------------MMMG 280 (449)
T ss_pred ---------------CHHHHHHH-CCCCCCCeEEEecCCCCH-HHHHHHHHcCCCEEEChHHH-------------hhhc
Confidence 01111111 234466788999999887 88999999999999887641 1111
Q ss_pred cceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHh----------
Q 009282 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM---------- 404 (538)
Q Consensus 335 ~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~---------- 404 (538)
..+ .++..++++|+++++|||..+.+.. ++|. ++......+..
T Consensus 281 ~~~------------~~~~~~~~~Gv~v~lGtD~~~~~~~------~~~~---------~~~~a~~~~~~~~~~~~~~~~ 333 (449)
T PRK08204 281 HGY------------PVTGRLLAHGVRPSLGVDVVTSTGG------DMFT---------QMRFALQAERARDNAVHLREG 333 (449)
T ss_pred CCC------------CcHHHHHhcCCceeeccccCCCCCc------CHHH---------HHHHHHHHHHhhccccccccc
Confidence 111 2278899999999999997543221 1111 11221111111
Q ss_pred ---hhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEE
Q 009282 405 ---VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 481 (538)
Q Consensus 405 ---~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V 481 (538)
....++++.++|+++|.|+|+++|+++++|+|++||.|||||+|.+.+...+.. ++.....+.+. ..+|..|
T Consensus 334 ~~~~~~~~~~~~~al~~~T~~gA~~lg~~~~~G~le~Gk~ADlvvld~~~~~~~p~~---dp~~~lv~~~~--~~~v~~v 408 (449)
T PRK08204 334 GMPPPRLTLTARQVLEWATIEGARALGLEDRIGSLTPGKQADLVLIDATDLNLAPVH---DPVGAVVQSAH--PGNVDSV 408 (449)
T ss_pred ccCCCcCCCCHHHHHHHHhHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCccccCCc---ChhhhheeccC--CCCceEE
Confidence 123569999999999999999999988899999999999999998876443321 11111122221 3689999
Q ss_pred EECCEEEEECCeeeccC
Q 009282 482 IAGGRVVWENDELNVVP 498 (538)
Q Consensus 482 ~v~G~~V~~~~~~~~~~ 498 (538)
|++|++|++++++++.|
T Consensus 409 ~v~G~~v~~~~~~~~~d 425 (449)
T PRK08204 409 MVAGRAVKRNGKLLGVD 425 (449)
T ss_pred EECCEEEEECCEeccCC
Confidence 99999999999999987
|
|
| >PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=322.77 Aligned_cols=375 Identities=18% Similarity=0.201 Sum_probs=250.5
Q ss_pred EEEECcEEEcCCC----ceeeeEEEeCCEEEEecCCCCCC-CCceEEecCCCeeeccccccccccccccC-CC-------
Q 009282 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS------- 121 (538)
Q Consensus 55 ~~i~n~~vv~~~~----~~~~~V~I~~grI~~Vg~~~~~~-~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~------- 121 (538)
+++.|+.|+++++ ..+++|+|+||+|++|++..+.+ ++.++||+.|++|+|||||+|+|++.... +.
T Consensus 4 ~i~~~~~v~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~vID~~g~~v~PGlVn~H~H~~~~~~~g~~~~~~~~ 83 (451)
T PRK08203 4 WIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGGALPQPADEVFDARGHVVTPGLVNTHHHFYQTLTRALPAAQDAE 83 (451)
T ss_pred EEEeccEEEEeCCCceEeeccEEEEECCEEEEEeCCccCCCCCCeEEeCCCCEEecceEeccccccchhcccccccCCCc
Confidence 4555578999875 35789999999999999975533 35789999999999999999999987522 11
Q ss_pred --------------CChhhHHH----HHHHHHhCCcEEEecccCCCC--C--CHHHHHHHHHHHhcccceeeeeee----
Q 009282 122 --------------ETIDDFFS----GQAAALAGGTTMHIDFVIPIN--G--SLTAGFEAYEKKAKNSCMDYGFHM---- 175 (538)
Q Consensus 122 --------------~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~---- 175 (538)
.++++++. ....++++||||++|+..... . .....+++..+.+.+..+......
T Consensus 84 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~ 163 (451)
T PRK08203 84 LFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSSDHHYLFPNGLRDALDDQIEAAREIGMRFHATRGSMSLGES 163 (451)
T ss_pred HHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEEcceeeccccccchHHHHHHHHHHcCCeEEEecceeecCCc
Confidence 12222222 234568899999999753211 1 245667777777766443322110
Q ss_pred --eee-c----CChhhHHHHHHHHHHc----CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHH
Q 009282 176 --AIT-K----WDEVVSDEMEVMVKEK----GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFE 243 (538)
Q Consensus 176 --~~~-~----~~~~~~~~~~~~~~~~----g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~-~~~~~~ 243 (538)
... . ..++.++...++.++. ..+.+++.+.+++.+.++.+.++++++.|+++|+++++|+.+ ......
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~ 243 (451)
T PRK08203 164 DGGLPPDSVVEDEDAILADSQRLIDRYHDPGPGAMLRIALAPCSPFSVSRELMRESAALARRLGVRLHTHLAETLDEEAF 243 (451)
T ss_pred cCCCCccccccCHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHH
Confidence 000 0 1123344444444221 125677777777777889999999999999999999999843 332222
Q ss_pred HHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCc
Q 009282 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (538)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~ 323 (538)
.. ...|... ++.+ ......+.++.+.|+...++ +.++++++.|+.++.||...
T Consensus 244 ~~---~~~g~~~----------------~~~l-~~~g~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~~P~~~------ 296 (451)
T PRK08203 244 CL---ERFGMRP----------------VDYL-EDLGWLGPDVWLAHCVHLDD-AEIARLARTGTGVAHCPCSN------ 296 (451)
T ss_pred HH---HHhCCCH----------------HHHH-HHcCCCCCCeEEEEEeCCCH-HHHHHHHhcCCeEEECcHHh------
Confidence 22 1233321 2222 22244567888999998887 88999999999998887642
Q ss_pred ccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHH
Q 009282 324 SWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~ 403 (538)
+..+... .+++.+++.|+++++|||+...+.... ++. ++.+......
T Consensus 297 -------~~l~~~~------------~~~~~~~~~Gv~v~lGtD~~~~~~~~~-----~~~---------~~~~~~~~~~ 343 (451)
T PRK08203 297 -------MRLASGI------------APVRELRAAGVPVGLGVDGSASNDGSN-----LIG---------EARQALLLQR 343 (451)
T ss_pred -------hhhccCC------------CCHHHHHHCCCeEEEecCCCccCCCcC-----HHH---------HHHHHHHHhh
Confidence 1111111 227899999999999999754322111 111 2222222222
Q ss_pred hhh-cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEE--eeEEEE
Q 009282 404 MVE-SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV--KGKVEV 480 (538)
Q Consensus 404 ~~~-~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~ 480 (538)
... ...+++.++|+++|.|||+++|++ .+|+|++||.|||||+|.+.+...+ .+.|+.+... ..+|..
T Consensus 344 ~~~~~~~i~~~~~l~~~T~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~~~~~--------~~~p~~~l~~~~~~~v~~ 414 (451)
T PRK08203 344 LRYGPDAMTAREALEWATLGGARVLGRD-DIGSLAPGKLADLALFDLDELRFAG--------AHDPVAALVLCGPPRADR 414 (451)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCccCEEEEcCCccccCC--------ccChHHHHHccCCCCccE
Confidence 221 235999999999999999999996 7899999999999999988763321 1345543322 358999
Q ss_pred EEECCEEEEECCeeeccC
Q 009282 481 TIAGGRVVWENDELNVVP 498 (538)
Q Consensus 481 V~v~G~~V~~~~~~~~~~ 498 (538)
||++|++||++|++++.|
T Consensus 415 v~v~G~~v~~~~~~~~~d 432 (451)
T PRK08203 415 VMVGGRWVVRDGQLTTLD 432 (451)
T ss_pred EEECCEEEEECCcccCCC
Confidence 999999999999999876
|
|
| >PRK07203 putative chlorohydrolase/aminohydrolase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=316.79 Aligned_cols=375 Identities=20% Similarity=0.246 Sum_probs=247.1
Q ss_pred EEEECcEEEcCCC---c-eeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCeeeccccccccccccccC-C------
Q 009282 55 ILIKGGTVVNAHH---Q-QIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------ 120 (538)
Q Consensus 55 ~~i~n~~vv~~~~---~-~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~------ 120 (538)
++|+|++|+++++ . .+++|+|+||+|++||+.... .++.++||++|++|+|||||+|+|++.... +
T Consensus 2 ~li~~~~i~~~~~~~~~~~~~~v~I~~g~I~~Vg~~~~~~~~~~~~~viD~~g~lv~PGfID~H~H~~~~~~rg~~~~~~ 81 (442)
T PRK07203 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFIDAKGKLIMPGLINSHNHIYSGLARGMMANIP 81 (442)
T ss_pred EEEECCEEEeCCCCCceeeccEEEEECCEEEEEeCchhhccccCCCeEEeCCCCEEecceeeccccchhhhhcccccccC
Confidence 6899999998653 2 478999999999999964221 235689999999999999999999875421 1
Q ss_pred ------------------CCChhhHHHH----HHHHHhCCcEEEecccCCCCC---CHHHHHHHHHHHhcccceeeeeee
Q 009282 121 ------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKNSCMDYGFHM 175 (538)
Q Consensus 121 ------------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 175 (538)
..++++++.. ...++++||||++|+...... ......++..+.+.+..+.+.+..
T Consensus 82 ~~~~l~~~l~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~d 161 (442)
T PRK07203 82 PPPDFISILKNLWWRLDRALTLEDVYYSALICSLEAIKNGVTTVFDHHASPNYIGGSLFTIADAAKKVGLRAMLCYETSD 161 (442)
T ss_pred CCCCHHHHHHhheehhhhcCCHHHHHHHHHHHHHHHHHcCceEEEccccccccccchHHHHHHHHHHhCCeEEEeccccc
Confidence 0122333222 245689999999998532211 222334444445544433322211
Q ss_pred ee-ecCChhhHHHHHHHHHH-cC--CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHHHHHH
Q 009282 176 AI-TKWDEVVSDEMEVMVKE-KG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIE 250 (538)
Q Consensus 176 ~~-~~~~~~~~~~~~~~~~~-~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~~~~~~~~~ 250 (538)
.. .....+.+++..++.+. .+ ...+...+.+++.+.++.+.++++.+.|+++|+++++|.. ...+.....+ .
T Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~lA~~~g~~i~~H~~E~~~e~~~~~~---~ 238 (442)
T PRK07203 162 RDGEKELQEGVEENIRFIKHIDEAKDDMVEAMFGLHASFTLSDATLEKCREAVKETGRGYHIHVAEGIYDVSDSHK---K 238 (442)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCceEEEEccCCCcCcCHHHHHHHHHHHHHcCCcEEEEecCChHHHHHHHH---H
Confidence 10 01112223333333322 12 2256677778888888999999999999999999999994 4444333332 2
Q ss_pred cCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCC
Q 009282 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (538)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (538)
+|... ++ .+.....++.++.+.||.+.++ ++++.+++.|+.|++||.+ |
T Consensus 239 ~g~~~----------------v~-~l~~~Gll~~~~~~~H~~~~~~-~d~~~la~~g~~v~~~P~s-------------n 287 (442)
T PRK07203 239 YGKDI----------------VE-RLADFGLLGEKTLAAHCIYLSD-EEIDLLKETDTFVVHNPES-------------N 287 (442)
T ss_pred cCCCH----------------HH-HHHhCCCCCCCcEEEEeecCCH-HHHHHHHhcCCeEEECchh-------------h
Confidence 34321 11 2222345677889999999887 8899999999999999986 3
Q ss_pred cccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh-hcCC
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV-ESGQ 409 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~-~~~~ 409 (538)
+..+.+. .++++++++|+++++|||+...+ .|. ++.+...+++.. ....
T Consensus 288 ~~l~~g~------------~p~~~~~~~Gv~v~lGtD~~~~d---------~~~---------~~~~a~~~~~~~~~~~~ 337 (442)
T PRK07203 288 MGNAVGY------------NPVLEMIKNGILLGLGTDGYTSD---------MFE---------SYKVANFKHKHAGGDPN 337 (442)
T ss_pred hhcccCC------------CCHHHHHHCCCeEEEcCCCCCcc---------HHH---------HHHHHHHHhccccCCCC
Confidence 3333332 22889999999999999975321 111 233333332221 1112
Q ss_pred CCHHHHHHHHhHhHHHHcC--CCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEE
Q 009282 410 ISVTDYVRLTSTECARIFN--VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 487 (538)
Q Consensus 410 ls~~eal~~aT~~~A~~lg--~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~ 487 (538)
++.+++++|+|.+||+++| ++++.|+|++||.||||++|.+.+...+.. ++.....|.+. ...|..||++|++
T Consensus 338 ~~~~~~~~~aT~~gA~~lg~~~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~---~~~~~~v~~~~--~~~v~~v~v~G~~ 412 (442)
T PRK07203 338 VGWPESPAMLFENNNKIAERYFGAKFGILEEGAKADLIIVDYNPPTPLNED---NINGHILFGMN--GGSVDTTIVNGKV 412 (442)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCccCEEEEcCCCCeecCcc---ccccceEeecC--CCceEEEEECCEE
Confidence 4578999999999999999 456799999999999999998766444321 12222334332 4689999999999
Q ss_pred EEECCeeeccC
Q 009282 488 VWENDELNVVP 498 (538)
Q Consensus 488 V~~~~~~~~~~ 498 (538)
|+++|++++.|
T Consensus 413 v~~~g~~~~~d 423 (442)
T PRK07203 413 VMEDRKFLNFD 423 (442)
T ss_pred EEECCcccccC
Confidence 99999999987
|
|
| >PRK15446 phosphonate metabolism protein PhnM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=308.39 Aligned_cols=359 Identities=18% Similarity=0.205 Sum_probs=248.8
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccccccccccc----ccCCC--CChhh
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM----EFMGS--ETIDD 126 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~----~~~~~--~~~~~ 126 (538)
++++|+|++|++.+...+++|+|+||||++|++... ...++||++|++|+|||||+|+|... +..+. ...++
T Consensus 2 ~~~~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~--~~~~~iDa~g~~v~PG~ID~H~h~~~~~~~p~~~~~~~~~~~ 79 (383)
T PRK15446 2 MEMILSNARLVLPDEVVDGSLLIEDGRIAAIDPGAS--ALPGAIDAEGDYLLPGLVDLHTDNLEKHLAPRPGVDWPADAA 79 (383)
T ss_pred ccEEEECcEEEcCCCceeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEEeCeEEcccCCcccccCCCCCCccchHHH
Confidence 568999999999876668999999999999998543 24578999999999999999996542 21111 22277
Q ss_pred HHHHHHHHHhCCcEEEecccCCC--C------CCHHHHH-HHHH--HHhcccceeeeeeeeeecCChhhHHHHHHHHHHc
Q 009282 127 FFSGQAAALAGGTTMHIDFVIPI--N------GSLTAGF-EAYE--KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEK 195 (538)
Q Consensus 127 ~~~~~~~~l~~GvTt~~d~~~~~--~------~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (538)
+.++.++++++||||++|+.... . ......+ +... ....+..+++++|.....++.+.++++..+. +.
T Consensus 80 ~~~~~~~a~~gG~Tt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD~~~h~~~~~~~~~~~~~l~~~~-~~ 158 (383)
T PRK15446 80 LAAHDAQLAAAGITTVFDALSVGDEEDGGLRSRDLARKLIDAIEEARARGLLRADHRLHLRCELTNPDALELFEALL-AH 158 (383)
T ss_pred HHHHHHHHHhCCccEeeeeeEeccCCCCCcccHHHHHHHHHHHHHhhhcCchhccceeEEEEEecCcchHHHHHHHh-cC
Confidence 88899999999999999974221 1 1122122 2222 2235678999999999888888888999987 78
Q ss_pred CCcEEEEEeeeC-CCc-cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHH
Q 009282 196 GINSFKFFMAYK-GSF-MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (538)
Q Consensus 196 g~~~ik~~~~~~-~~~-~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~ 273 (538)
|...+|.|++.. +.. ....+.+++.. +.+.| ..|++.......... +|...+.+++.
T Consensus 159 g~~~~k~fm~~~p~~~~~~~~~~~~~~~--~~~~g---~~~~e~~~~~~~~~~----------------~~~~~~~e~i~ 217 (383)
T PRK15446 159 PRVDLVSLMDHTPGQRQFRDLEKYREYY--AGKYG---LSDEEFDAFVEERIA----------------LSARYAPPNRR 217 (383)
T ss_pred CCcCEEEEeCCCCccccccCHHHHHHHH--HhhcC---CCHHHHHHHHHHHHH----------------hHhhcCHHHHH
Confidence 999999998764 422 22445555555 44667 667776544322211 24445678899
Q ss_pred HHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccccee-ecC-CCCC--cccH
Q 009282 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV-MSP-PIRA--SGHN 349 (538)
Q Consensus 274 ~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~r~--~~~~ 349 (538)
++++.++..|.++ ..|..... +.++.+++.|+.++-.+.. .+.... ....+.... ..| ++|. ....
T Consensus 218 ~~v~~A~~~g~~v-~sH~~~~~--~~i~~a~~~Gv~~~e~~~~------~e~~~~-~~~~g~~v~~~~p~~~r~~~~~~~ 287 (383)
T PRK15446 218 AIAALARARGIPL-ASHDDDTP--EHVAEAHALGVAIAEFPTT------LEAARA-ARALGMSVLMGAPNVVRGGSHSGN 287 (383)
T ss_pred HHHHHHHHCCCce-eecCCCCH--HHHHHHHHcCCceeeCCCc------HHHHHH-HHHCCCEEEeCCcccccCCcccch
Confidence 9999999999997 77874222 5677888889887632211 111100 000111111 112 2333 3456
Q ss_pred HHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 350 ~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
..++++++.|++++++||+.|.+. +...+ .+....++|++++|+++|.|||+++|+
T Consensus 288 ~~~~~~~~~Gv~~~lgSD~~p~~~-----------------------~~~~~-~~~~~~gls~~~al~~~T~npA~~lgl 343 (383)
T PRK15446 288 VSALDLAAAGLLDILSSDYYPASL-----------------------LDAAF-RLADDGGLDLPQAVALVTANPARAAGL 343 (383)
T ss_pred HhHHHHHHCCCcEEEEcCCChhhH-----------------------HHHHH-HHHHhcCCCHHHHHHHHhHHHHHHcCC
Confidence 788999999999999999864321 11122 233355799999999999999999999
Q ss_pred CCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECC
Q 009282 430 YPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEND 492 (538)
Q Consensus 430 ~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~ 492 (538)
++ .|+|++|+.|||+++|.++. ...+..||++|++||+.+
T Consensus 344 ~~-~G~I~~G~~ADlvv~d~~~~----------------------~~~v~~v~~~G~~v~~~~ 383 (383)
T PRK15446 344 DD-RGEIAPGKRADLVRVRRAGG----------------------LPVVRAVWRGGRRVFLAG 383 (383)
T ss_pred CC-CcCcCCCCcCCEEEEcCCCC----------------------CcchheEEECCEEEEeCC
Confidence 54 49999999999999997721 236889999999999753
|
|
| >TIGR03314 Se_ssnA putative selenium metabolism protein SsnA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=310.88 Aligned_cols=375 Identities=21% Similarity=0.267 Sum_probs=252.1
Q ss_pred EEEECcEEEcCCC----ceeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCeeeccccccccccccccC-C------
Q 009282 55 ILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------ 120 (538)
Q Consensus 55 ~~i~n~~vv~~~~----~~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~------ 120 (538)
++|+|++|++++. .++++|+|+||+|++||+..+. .++.++||++|++|+|||||+|+|+..... +
T Consensus 1 ~li~~~~i~t~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~~id~~g~~v~PG~vd~H~H~~~~~~rg~~~d~~ 80 (441)
T TIGR03314 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFIDAKGKLIMPGFINTHNHFYSTFARGMMADIP 80 (441)
T ss_pred CEEECCEEEecCCCCceEeccEEEEECCEEEEEcCchhhcccCCCCeEEeCCCCEEecCeeecccchhhhhhccccccCC
Confidence 3789999997653 2578999999999999975321 135688999999999999999999976521 1
Q ss_pred ------------------CCChhhHHHH----HHHHHhCCcEEEecccCCCC---CCHHHHHHHHHHHhcccceeeeeee
Q 009282 121 ------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPIN---GSLTAGFEAYEKKAKNSCMDYGFHM 175 (538)
Q Consensus 121 ------------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (538)
..++++++.. ...++++||||++|+..... .......++..+.+.+..+.+.+..
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~ 160 (441)
T TIGR03314 81 PPPDFISILKNLWWRLDRALTLEDVYYSGLICSLDAIKSGCTTVIDHHASPNAITGSLSTIRKAADEAGLRTMLCYETSD 160 (441)
T ss_pred CCCCHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHcCCeEEEecccccccccchHHHHHHHHHHhCCeEEEeeeeec
Confidence 0122232222 23458999999999854322 1233445666666666555444322
Q ss_pred eee-cCChhhHHHHHHHHH-HcC--CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHHHHHH
Q 009282 176 AIT-KWDEVVSDEMEVMVK-EKG--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIE 250 (538)
Q Consensus 176 ~~~-~~~~~~~~~~~~~~~-~~g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~~~~~~~~~ 250 (538)
... ....+.+.+..++.+ ..+ ...++..+.++..+.++++.++++.+.|+++++++++|+. +..+.....+ .
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~i~~H~~E~~~e~~~~~~---~ 237 (441)
T TIGR03314 161 RDGGKEMQEGVEENIAFIKKSSGKEPYLVEAHIGAHAPFTVSDAGLEMCREAVQATGRGFHIHVAEDIYDVEDSHH---K 237 (441)
T ss_pred CCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHH---H
Confidence 110 111222333333322 222 2357777888888889999999999999999999999994 4444333332 2
Q ss_pred cCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCC
Q 009282 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (538)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (538)
+|... ++.+ .....++.++.+.||.+.++ ++++.+++.|+.|++||.+ |
T Consensus 238 ~g~~~----------------~~~l-~~~G~l~~~~~~~H~~~~~~-~d~~~la~~g~~v~~cP~s-------------n 286 (441)
T TIGR03314 238 YGKDI----------------VERL-ADFGLLGSKTLAAHCIYLSD-REIELLNETDTFVVHNPES-------------N 286 (441)
T ss_pred cCCCH----------------HHHH-HHCCCCCCCeEEEEEecCCH-HHHHHHHHcCCcEEECHHH-------------H
Confidence 33321 2222 22345678899999999887 8999999999999999986 4
Q ss_pred cccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhc-CC
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES-GQ 409 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~-~~ 409 (538)
+..+.++ +| +.+++++|++++||||+...+ .|. ++.+...+++.... ..
T Consensus 287 ~~l~~G~---~p---------~~~~~~~Gv~v~LGtD~~~~d---------~~~---------em~~a~~~~~~~~~~~~ 336 (441)
T TIGR03314 287 MGNAVGY---NP---------VLRMFKNGILLGLGTDGYTSD---------MFE---------SLKFANFKHKDAGGDLN 336 (441)
T ss_pred hhhccCC---CC---------HHHHHHCCCEEEEcCCCCCcC---------HHH---------HHHHHHHHhccccCCCC
Confidence 4433332 22 788999999999999975332 121 33443333332211 11
Q ss_pred CCHHHHHHHHhHhHHHHcC--CCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEE
Q 009282 410 ISVTDYVRLTSTECARIFN--VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 487 (538)
Q Consensus 410 ls~~eal~~aT~~~A~~lg--~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~ 487 (538)
..+.++++++|.++|+++| ++.+.|+|++||.|||+++|.+.++.++..++.+ ...|... .++|..||++|++
T Consensus 337 ~~~~~~~~~aT~~ga~al~~~l~~~~G~Le~G~~ADlvv~d~~~~~~~~~~~~~~---~lv~~~~--~~~V~~v~V~G~~ 411 (441)
T TIGR03314 337 AAWPESPAMLFENNNEIAERNFGAKFGRLEPGAKADLIIVDYNAPTPLTADNING---HILFGMN--GGSVDSTMVNGKV 411 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcccEEEEcCCCCeeechhhccc---cceecCC--CCeeEEEEECCEE
Confidence 2457899999999999997 4567899999999999999988776665433222 2233322 5689999999999
Q ss_pred EEECCeeeccC
Q 009282 488 VWENDELNVVP 498 (538)
Q Consensus 488 V~~~~~~~~~~ 498 (538)
||+++++++.|
T Consensus 412 v~~~~~~~~~d 422 (441)
T TIGR03314 412 VMEDREFLHFD 422 (441)
T ss_pred EEECCcccccC
Confidence 99999999987
|
Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. |
| >PRK06151 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=315.80 Aligned_cols=375 Identities=19% Similarity=0.195 Sum_probs=240.2
Q ss_pred cEEEECcEEEcCCC-----ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc-----cC----
Q 009282 54 KILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME-----FM---- 119 (538)
Q Consensus 54 ~~~i~n~~vv~~~~-----~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~-----~~---- 119 (538)
.++|+|++|++.++ .++++|+|+||+|++||+.... .+.++||+.|++|+|||||+|+|+... ..
T Consensus 2 ~~li~~~~v~~~d~~~~~~~~~~~VlVe~g~I~~Vg~~~~~-~~~~viD~~g~~vlPGlVdaH~Hl~~~~~~~~~~~~~~ 80 (488)
T PRK06151 2 RTLIKARWVLGFDDGDHRLLRDGEVVFEGDRILFVGHRFDG-EVDRVIDAGNALVGPGFIDLDALSDLDTTILGLDNGPG 80 (488)
T ss_pred eEEEEccEEEEEcCCCCeEEeCcEEEEECCEEEEecCCCCC-CCCeEEeCCCCEEecCEEeeecccchhhhhcccccchh
Confidence 47999999977553 2578999999999999985432 246899999999999999999997421 00
Q ss_pred ---C--------------CCChhhHH----HHHHHHHhCCcEEEecccCCCC---C----CHHHHHHHHHHHhcccceee
Q 009282 120 ---G--------------SETIDDFF----SGQAAALAGGTTMHIDFVIPIN---G----SLTAGFEAYEKKAKNSCMDY 171 (538)
Q Consensus 120 ---~--------------~~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~---~----~~~~~~~~~~~~~~~~~~~~ 171 (538)
+ ..++++++ ..+..++++||||++|+..... . .....+++..+.+.+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~t~e~~~~~a~~~~~e~L~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~a~~~~GiR~~~~~ 160 (488)
T PRK06151 81 WAKGRVWSRDYVEAGRREMYTPEELAFQKRYAFAQLLRNGITTAMPIASLFYRQWAETYAEFAAAAEAAGRLGLRVYLGP 160 (488)
T ss_pred HHhcccCchhhhhcchhhcCCHHHHHHHHHHHHHHHHhcCeeEEehhhhhhccccccccchHHHHHHHHHHcCCeEEecc
Confidence 0 12233332 2345568999999998743211 1 13444555555554432221
Q ss_pred eeeee-----e-----ecC----ChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEE
Q 009282 172 GFHMA-----I-----TKW----DEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234 (538)
Q Consensus 172 ~~~~~-----~-----~~~----~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H 234 (538)
.+... . ... ..+.+.+..++.+ ..|.+.+|....++..+.++.+.+.++++.|+++|+++.+|
T Consensus 161 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H 240 (488)
T PRK06151 161 AYRSGGSVLEADGSLEVVFDEARGLAGLEEAIAFIKRVDGAHNGLVRGMLAPDRIETCTVDLLRRTAAAARELGCPVRLH 240 (488)
T ss_pred hhccCccccccCCCCCccccchhHHHHHHHHHHHHHHhhcccCCceEEEEcCCCCCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 11000 0 000 1112233333322 34667888888877777889999999999999999999999
Q ss_pred cC-ChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHH--------HHHHHHHH
Q 009282 235 AE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAM--------EEIAKARK 305 (538)
Q Consensus 235 ~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~--------~~i~~~~~ 305 (538)
+. +..+.....+ .+|... ++. +......+.++.+.|+...++. ++++++++
T Consensus 241 ~~e~~~~~~~~~~---~~g~~~----------------~~~-~~~~g~l~~r~~l~H~~~l~~~~~~~~~~~~~~~~la~ 300 (488)
T PRK06151 241 CAQGVLEVETVRR---LHGTTP----------------LEW-LADVGLLGPRLLIPHATYISGSPRLNYSGGDDLALLAE 300 (488)
T ss_pred ECCchHHHHHHHH---HcCCCH----------------HHH-HHHcCCCCCCcEEEEEEEcCCccccccCCHHHHHHHHh
Confidence 94 4433222221 223211 111 1112334667888998876531 67889999
Q ss_pred cCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCccc
Q 009282 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRK 385 (538)
Q Consensus 306 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~ 385 (538)
.|+.+++||... ...+.. ..++..++++|+++++|||..+.+ +|.
T Consensus 301 ~g~~v~~~P~~~-------------~~~g~~------------~~p~~~l~~~Gv~v~lGtD~~~~~---------~~~- 345 (488)
T PRK06151 301 HGVSIVHCPLVS-------------ARHGSA------------LNSFDRYREAGINLALGTDTFPPD---------MVM- 345 (488)
T ss_pred cCCEEEECchhh-------------hhhccc------------cccHHHHHHCCCcEEEECCCCCcc---------HHH-
Confidence 999998887531 111111 123789999999999999964321 111
Q ss_pred CCCCCcchhhhHHHHHHHhhh--cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCC
Q 009282 386 IPNGVNGIEERMHLVWDTMVE--SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSR 463 (538)
Q Consensus 386 ~~~g~~g~~~~~~~~~~~~~~--~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~ 463 (538)
+.........+.. ...++++++|+++|.|||+++|+++ +|+|++||.|||||+|.+.+...+. .++
T Consensus 346 --------~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~~A~~lg~~~-~G~I~~G~~ADlvvld~~~~~~~~~---~d~ 413 (488)
T PRK06151 346 --------NMRVGLILGRVVEGDLDAASAADLFDAATLGGARALGRDD-LGRLAPGAKADIVVFDLDGLHMGPV---FDP 413 (488)
T ss_pred --------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhCCCC-CcccCCCCcCCEEEEeCCccccCCc---cCH
Confidence 1222222222221 1238999999999999999999965 8999999999999999876533321 111
Q ss_pred CCCCccCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 464 LDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 464 ~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
.....+.+. ..+|..||++|++||++|+++..|
T Consensus 414 ~~~lv~~~~--~~~v~~v~v~G~~v~~~g~~~~~d 446 (488)
T PRK06151 414 IRTLVTGGS--GRDVRAVFVDGRVVMEDGRLPGVD 446 (488)
T ss_pred HHHHHhhCC--CCCccEEEECCEEEEECCeecCCC
Confidence 111222222 347999999999999999999987
|
|
| >PRK06038 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=308.40 Aligned_cols=374 Identities=23% Similarity=0.319 Sum_probs=244.1
Q ss_pred cEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-C----------
Q 009282 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------- 120 (538)
Q Consensus 54 ~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~---------- 120 (538)
+++|+|++|+++++ ..+++|+|+||+|++|++.... ...++||+.|++|+|||||+|+|+..... +
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~v~v~~g~I~~i~~~~~~-~~~~~id~~g~~v~PG~vd~H~H~~~~~~~g~~~~~~~~~~ 81 (430)
T PRK06038 3 DIIIKNAYVLTMDAGDLKKGSVVIEDGTITEVSESTPG-DADTVIDAKGSVVMPGLVNTHTHAAMTLFRGYADDLPLAEW 81 (430)
T ss_pred CEEEEccEEEECCCCeeeccEEEEECCEEEEecCCCCC-CCCEEEeCCCCEEecCeeecccCcchhhhhhccCCCCHHHH
Confidence 58999999998764 3578999999999999986433 34689999999999999999999986411 0
Q ss_pred ----------CCChhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee-eeecCChhhH
Q 009282 121 ----------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AITKWDEVVS 185 (538)
Q Consensus 121 ----------~~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 185 (538)
..++++++ ..+..++++||||++|+... .....++..+.+.+....++... .......+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~----~~~~~~a~~~~GiR~~~~~~~~d~~~~~~~~~~l 157 (430)
T PRK06038 82 LNDHIWPAEAKLTAEDVYAGSLLACLEMIKSGTTSFADMYFY----MDEVAKAVEESGLRAALSYGMIDLGDDEKGEAEL 157 (430)
T ss_pred HHhhhhhchhcCCHHHHHHHHHHHHHHHHhcCceeEEccccC----HHHHHHHHHHhCCeEEEEchhccCCCccchHHHH
Confidence 11222222 12345688999999998532 22344444444444333222110 0001112233
Q ss_pred HHHHHHHHHc---CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009282 186 DEMEVMVKEK---GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (538)
Q Consensus 186 ~~~~~~~~~~---g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (538)
++...+.+.. ....++....++....++++.++++++.|+++|+++.+|+.+......... ...|...
T Consensus 158 ~~~~~~i~~~~~~~~g~v~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~--~~~G~~~------- 228 (430)
T PRK06038 158 KEGKRFVKEWHGAADGRIKVMYGPHAPYTCSEEFLSKVKKLANKDGVGIHIHVLETEAELNQMK--EQYGMCS------- 228 (430)
T ss_pred HHHHHHHHHhcCCCCCceEEEEeCCcCccCCHHHHHHHHHHHHHcCCcEEEEcCCCHHHHHHHH--HHhCCCH-------
Confidence 3333333221 123566666777777889999999999999999999999966543222211 1223321
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCC
Q 009282 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (538)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (538)
++. ++....++.++.+.|+...++ +.++++++.|+.+++||.. ++..+...
T Consensus 229 ---------i~~-l~~~g~l~~r~~~~H~~~l~~-~~~~~la~~g~~v~~~P~~-------------n~~~~~~~----- 279 (430)
T PRK06038 229 ---------VNY-LDDIGFLGPDVLAAHCVWLSD-GDIEILRERGVNVSHNPVS-------------NMKLASGI----- 279 (430)
T ss_pred ---------HHH-HHHcCCCCCCeEEEEEecCCH-HHHHHHHhcCCEEEEChHH-------------hhhhccCC-----
Confidence 111 222234577888999998887 8899999999999988764 22111111
Q ss_pred CCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCCCHHHHHHHHh
Q 009282 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQISVTDYVRLTS 420 (538)
Q Consensus 343 ~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~ls~~eal~~aT 420 (538)
.++..++++|+++++|||+...+.... ++. ++.......... ...+++++++|+|+|
T Consensus 280 -------~p~~~~~~~Gv~v~lGtD~~~~~~~~d-----~~~---------~~~~a~~~~~~~~~~~~~~~~~~al~~aT 338 (430)
T PRK06038 280 -------APVPKLLERGVNVSLGTDGCASNNNLD-----MFE---------EMKTAALLHKVNTMDPTALPARQVLEMAT 338 (430)
T ss_pred -------CCHHHHHHCCCeEEEeCCCCccCCCcC-----HHH---------HHHHHHHHhhhccCCCCcCCHHHHHHHHh
Confidence 228899999999999999653322111 111 222222222211 234689999999999
Q ss_pred HhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 421 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 421 ~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
.|||+++|++ .|+|++||.||||++|.+.+...+.. ++....+|.+. ..+|..||++|+++|++|+++..|
T Consensus 339 ~~gA~~lg~~--~G~l~~G~~ADlvvld~~~~~~~p~~---~~~~~~v~~~~--~~~v~~v~v~G~~v~~~g~~~~~d 409 (430)
T PRK06038 339 VNGAKALGIN--TGMLKEGYLADIIIVDMNKPHLTPVR---DVPSHLVYSAS--GSDVDTTIVDGRILMEDYKVLCMD 409 (430)
T ss_pred HHHHHHhCCC--CCccCCCcccCEEEEeCCCCccCCCC---ChHHheeEeCC--CCceeEEEECCEEEEECCeECCCC
Confidence 9999999994 59999999999999998865433321 11112233332 357999999999999999999987
|
|
| >PRK12393 amidohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-36 Score=308.57 Aligned_cols=379 Identities=20% Similarity=0.217 Sum_probs=245.4
Q ss_pred ccEEEECcE-EEcCCC----cee-eeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-CC----
Q 009282 53 SKILIKGGT-VVNAHH----QQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---- 121 (538)
Q Consensus 53 ~~~~i~n~~-vv~~~~----~~~-~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~---- 121 (538)
.+++|+|++ |++.++ ..+ ++|+|+||+|++||+. ...+++++||+.|++|+|||||+|+|+++.+. |.
T Consensus 2 ~~~li~~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~Vg~~-~~~~~~~viD~~g~~v~PG~VnaH~Hl~~~~~rg~~~~~ 80 (457)
T PRK12393 2 PSLLIRNAAAIMTGLPGDAARLGGPDIRIRDGRIAAIGAL-TPLPGERVIDATDCVVYPGWVNTHHHLFQSLLKGVPAGI 80 (457)
T ss_pred CcEEEECCeEEEecCCCccccccCceEEEECCEEEEEecc-CCCCCCeEEeCCCCEEecCEeecccCccccccccccccc
Confidence 468999996 677553 234 4899999999999983 33346799999999999999999999997631 11
Q ss_pred ------------------CChhhHH----HHHHHHHhCCcEEEecccCC---CCC--CHHHHHHHHHHHhcccceeeeee
Q 009282 122 ------------------ETIDDFF----SGQAAALAGGTTMHIDFVIP---ING--SLTAGFEAYEKKAKNSCMDYGFH 174 (538)
Q Consensus 122 ------------------~~~~~~~----~~~~~~l~~GvTt~~d~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~ 174 (538)
.+++.++ .+...++++||||++|+... ... .....+++..+.+.+..+..+..
T Consensus 81 ~~~~~~wl~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~ 160 (457)
T PRK12393 81 NQSLTAWLAAVPYRFRARFDEDLFRLAARIGLVELLRSGCTTVADHHYLYHPGMPFDTGDILFDEAEALGMRFVLCRGGA 160 (457)
T ss_pred CCchHHHhhhCcchhhhhCCHHHHHHHHHHHHHHHHhCCccEeecchhhcccccccchHHHHHHHHHHcCCeEEEEcccc
Confidence 1222222 22345689999999998521 111 23445566666665644332221
Q ss_pred e-------eeec-----CChhhHHHHHHHHHHc-C-C--cEEEEEeeeCCC-ccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 175 M-------AITK-----WDEVVSDEMEVMVKEK-G-I--NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 175 ~-------~~~~-----~~~~~~~~~~~~~~~~-g-~--~~ik~~~~~~~~-~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
. .... ..++.++....+.+.. + . ..+.+.+.++.. +.++++.++++++.|+++|+++.+|+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e 240 (457)
T PRK12393 161 TQTRGDHPGLPTALRPETLDQMLADVERLVSRYHDASPDSLRRVVVAPTTPTFSLPPELLREVARAARGMGLRLHSHLSE 240 (457)
T ss_pred ccccccCCCCCCcccccCHHHHHHHHHHHHHHhcCCCcCCceEEEEcCCCCCCCcCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 1 0000 0122333344443221 1 1 124555565555 6778999999999999999999999954
Q ss_pred -hhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccc
Q 009282 238 -GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (538)
Q Consensus 238 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~ 316 (538)
..++.... ...|... ++ .+.....++.++.+.|+...++ ++++++++.|+.++.||.+
T Consensus 241 ~~~~~~~~~---~~~g~~~----------------~~-~l~~~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~~P~s 299 (457)
T PRK12393 241 TVDYVDFCR---EKYGMTP----------------VQ-FVAEHDWLGPDVWFAHLVKLDA-EEIALLAQTGTGIAHCPQS 299 (457)
T ss_pred CHHHHHHHH---HHhCCCH----------------HH-HHHHcCCCCCCeEEEEEecCCH-HHHHHHHHcCCeEEECchh
Confidence 33332222 2223211 11 1122234567888999999887 8999999999999999865
Q ss_pred cccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhh
Q 009282 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~ 396 (538)
++..+.+. .+++.+++.|+++++|||+...+.... +|. ++.
T Consensus 300 -------------n~~lg~g~------------~~~~~~~~~Gv~v~lGtD~~~~~~~~d-----~~~---------~~~ 340 (457)
T PRK12393 300 -------------NGRLGSGI------------APALAMEAAGVPVSLGVDGAASNESAD-----MLS---------EAH 340 (457)
T ss_pred -------------hhhhcccC------------CCHHHHHHCCCeEEEecCCcccCCCcc-----HHH---------HHH
Confidence 22222221 227899999999999999754322211 111 222
Q ss_pred HHHHHHHhh-hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEe
Q 009282 397 MHLVWDTMV-ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVK 475 (538)
Q Consensus 397 ~~~~~~~~~-~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (538)
......... ....++++++|+++|.+||+++|++ ++|+|++||.|||+|+|.+.+...+.. ++. ++++.... .
T Consensus 341 ~a~~~~~~~~~~~~~~~~~~l~~~T~~~A~~l~~~-~~G~l~~G~~ADlvv~d~~~~~~~~~~---~~~-~~~~~~~~-~ 414 (457)
T PRK12393 341 AAWLLHRAEGGADATTVEDVVHWGTAGGARVLGLD-AIGTLAVGQAADLAIYDLDDPRFFGLH---DPA-IAPVACGG-P 414 (457)
T ss_pred HHHHHhhhcCCCCCCCHHHHHHHHhHHHHHHhCCC-CCCCcCCCCcCCEEEEeCCCcccCCCC---Cch-hhhhccCC-C
Confidence 222221110 1234899999999999999999995 489999999999999999877555421 221 22322211 4
Q ss_pred eEEEEEEECCEEEEECCeeeccC
Q 009282 476 GKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 476 ~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
.+|..||++|++||++|+++..|
T Consensus 415 ~~v~~v~v~G~~v~~~~~~~~~d 437 (457)
T PRK12393 415 APVKALLVNGRPVVENGAIPGLD 437 (457)
T ss_pred CCeeEEEECCEEEEECCccCCCC
Confidence 68999999999999999998876
|
|
| >PRK08393 N-ethylammeline chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=304.62 Aligned_cols=373 Identities=23% Similarity=0.294 Sum_probs=243.8
Q ss_pred cEEEECcEEEcCCCc--eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-C----------
Q 009282 54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------- 120 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~--~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~---------- 120 (538)
+++|+|++|++++.. .+++|+|+||+|++|++....+ ..++||+.|++|+|||||+|+|+..... +
T Consensus 2 ~~~i~~~~i~~~~~~~~~~~~i~i~~g~I~~v~~~~~~~-~~~~id~~~~~v~Pg~vd~H~H~~~~~~rg~~~~~~l~~~ 80 (424)
T PRK08393 2 SILIKNGYVIYGENLKVIRADVLIEGNKIVEVKRNINKP-ADTVIDASGSVVSPGFINAHTHSPMVLLRGLADDVPLMEW 80 (424)
T ss_pred eEEEECcEEEeCCCCceecceEEEECCEEEEecCCCCCC-CCeEEeCCCCEEccCeeeeccCcchHhhhhccCCCCHHHH
Confidence 589999999998863 5789999999999999865433 4679999999999999999999876411 0
Q ss_pred ----------CCChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee-ecCChhhH
Q 009282 121 ----------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS 185 (538)
Q Consensus 121 ----------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (538)
..++++++. ....++++||||++|+... .....++..+.+.+....++..... .....+.+
T Consensus 81 l~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~----~~~~~~a~~~~G~r~~~~~~~~~~~~~~~~~~~l 156 (424)
T PRK08393 81 LQNYIWPRERKLKRKDIYWGAYLGLLEMIKSGTTTFVDMYFH----MEEVAKATLEVGLRGYLSYGMVDLGDEEKREKEI 156 (424)
T ss_pred HHhhhccccccCCHHHHHHHHHHHHHHHHhcCceEEeccccC----HHHHHHHHHHhCCeEEEeceEecCCCccchHHHH
Confidence 122333332 3345689999999988532 2344555555555544443321111 11111222
Q ss_pred HHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
++..+..+ ..+...+...+.++..+.++++.++++++.|+++|+++++|+. ...++....+ .+|...
T Consensus 157 ~~~~~~~~~~~~~~~~~v~~~~~p~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~g~~~------ 227 (424)
T PRK08393 157 KETEKLMEFIEKLNSPRVHFVFGPHAPYTCSLALLKWVREKAREWNKLITIHLSETMDEIKQIRE---KYGKSP------ 227 (424)
T ss_pred HHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhCcCH------
Confidence 22222221 1233345555566667778999999999999999999999994 3433332222 223211
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
+ +.+.....++.++.+.|+...++ +.++++++.|+.+++||.. ++..+.+.
T Consensus 228 ----------~-~~l~~~G~l~~~~~~~H~~~l~~-~~l~~la~~g~~v~~~P~s-------------n~~lg~g~---- 278 (424)
T PRK08393 228 ----------V-VLLDEIGFLNEDVIAAHGVWLSS-RDIRILASAGVTVAHNPAS-------------NMKLGSGV---- 278 (424)
T ss_pred ----------H-HHHHHcCCCCCCcEEEEeecCCH-HHHHHHHhcCCEEEECHHH-------------HHhhccCC----
Confidence 1 11222344567788999998876 8899999999999988764 11111111
Q ss_pred CCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCCCHHHHHHHH
Q 009282 342 PIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQISVTDYVRLT 419 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~ls~~eal~~a 419 (538)
.++..++++|+++++|||....+....+ +. ++.+...+.+.. ....++++++|+++
T Consensus 279 --------~~~~~~~~~Gv~v~lGtD~~~~~~~~d~-----~~---------~~~~a~~~~~~~~~~~~~~~~~~al~~a 336 (424)
T PRK08393 279 --------MPLRKLLNAGVNVALGTDGAASNNNLDM-----LR---------EMKLAALLHKVHNLDPTIADAETVFRMA 336 (424)
T ss_pred --------CCHHHHHHCCCcEEEecCCCccCCchhH-----HH---------HHHHHHHHHhhccCCCCcCCHHHHHHHH
Confidence 2278899999999999997543222111 11 222222222221 11236889999999
Q ss_pred hHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 420 STECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 420 T~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
|.|||+++|++ .|+|++||+||||++|.+.+...+..++... ..+.+. ..+|..|||+|++||++|+++..|
T Consensus 337 T~~~A~~lg~~--~G~l~~G~~ADlvvld~~~~~~~~~~~~~~~---~~~~~~--~~~v~~v~v~G~~v~~~g~~~~~d 408 (424)
T PRK08393 337 TQNGAKALGLK--AGVIKEGYLADIAVIDFNRPHLRPINNPISH---LVYSAN--GNDVETTIVDGKIVMLDGEVLTLD 408 (424)
T ss_pred HHHHHHHhCCC--CCccCCCCccCEEEEeCCCCCcCCCCChHHH---eeeeCC--CCCeeEEEECCEEEEECCeECCCC
Confidence 99999999994 5999999999999999987655543322222 222221 358999999999999999998876
|
|
| >PRK09228 guanine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=307.33 Aligned_cols=361 Identities=19% Similarity=0.172 Sum_probs=230.7
Q ss_pred eeeeEEEeCCEEEEecCCCCC----CCCceEEecCCCeeeccccccccccccccC-CC--------------------CC
Q 009282 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------------------ET 123 (538)
Q Consensus 69 ~~~~V~I~~grI~~Vg~~~~~----~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~--------------------~~ 123 (538)
++++|+|+||||++||+..+. +.+.++||++|++|+|||||+|+|+..... +. .+
T Consensus 30 ~~g~I~I~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~lv~PGlVn~H~H~~~~~~~g~~~~~l~~wl~~~~~~~e~~~~~ 109 (433)
T PRK09228 30 EDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHIHYPQTDMIASYGEQLLDWLNTYTFPEERRFAD 109 (433)
T ss_pred CCeEEEEECCEEEEEcChHHhhhhcCCCCeEEeCCCCEEecceecccccccchhhccCCchHHHHHHHhhhhHHHHHhCC
Confidence 588999999999999985432 223689999999999999999999876521 10 11
Q ss_pred hhhHHHH----HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeee-ee----cCChhhHHHHHHHHHH
Q 009282 124 IDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-IT----KWDEVVSDEMEVMVKE 194 (538)
Q Consensus 124 ~~~~~~~----~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~ 194 (538)
++..+.. ...++++||||++|+............+...+.+.+..+..++... .. ....+.+++..++.++
T Consensus 110 ~~~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 189 (433)
T PRK09228 110 PAYAREVAEFFLDELLRNGTTTALVFGTVHPQSVDALFEAAEARNMRMIAGKVLMDRNAPDGLRDTAESGYDDSKALIER 189 (433)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEEeccccCHHHHHHHHHHHHHcCCeEEeeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence 2222222 3446899999999875432222333344444445454443332211 01 1112223333333322
Q ss_pred -cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhc-CCeEEEEcC-ChhhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
.+...++..+.++..+.++.+.++++.+.|+++ ++++++|.. +..+.....+ .+|.. + .
T Consensus 190 ~~~~~~~~~~~~p~~~~t~s~~~l~~~~~lA~~~~~~~i~~Hl~E~~~e~~~~~~---~~g~~---------~-----~- 251 (433)
T PRK09228 190 WHGKGRLLYAITPRFAPTSTPEQLEAAGALAREHPDVWIQTHLSENLDEIAWVKE---LFPEA---------R-----D- 251 (433)
T ss_pred HhCCCCceEEEECCcCCcCCHHHHHHHHHHHHHCCCCceEEeecCChhHHHHHHH---HcCCC---------C-----C-
Confidence 233456666677777788899999999999998 999999994 4443332222 22221 0 0
Q ss_pred HHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHH
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (538)
..+.++....++.++.+.|+...++ +.++++++.|+.++.||... +..+.+. .+
T Consensus 252 ~~~~l~~~G~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~~P~sn-------------~~lg~g~------------~~ 305 (433)
T PRK09228 252 YLDVYERYGLLGPRAVFAHCIHLED-RERRRLAETGAAIAFCPTSN-------------LFLGSGL------------FD 305 (433)
T ss_pred HHHHHHHcCCCCCCeEEEeccCCCH-HHHHHHHHcCCeEEECCccH-------------HhhcCCC------------cC
Confidence 0111222334577899999999887 88999999999999888752 2221221 22
Q ss_pred HHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCC
Q 009282 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 431 (538)
Q Consensus 352 l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~ 431 (538)
+..++++|+++++|||....+ ... ++. ++.......++ ...+++++++|+++|.+||+++|+++
T Consensus 306 ~~~~~~~Gv~v~lGtD~~~~~-~~d-----~~~---------~~~~~~~~~~~-~~~~~~~~~~l~~aT~~~A~~lg~~~ 369 (433)
T PRK09228 306 LKRADAAGVRVGLGTDVGGGT-SFS-----MLQ---------TMNEAYKVQQL-QGYRLSPFQAFYLATLGGARALGLDD 369 (433)
T ss_pred HHHHHHCCCeEEEecCCCCCC-CCC-----HHH---------HHHHHHHHhhc-ccCCCCHHHHHHHHhHHHHHHhCCCC
Confidence 788999999999999974321 110 111 22222222222 23458999999999999999999987
Q ss_pred CCcccccCCCccEEEEcCCCceeecc-----CcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 432 RKGAILVGSDADIIIFNPNSSFEITA-----RSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 432 ~~GsI~~Gk~ADlvvld~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
++|+|++||.||||++|.+..+...+ ..+.++.....|.+. .++|+.|||+|++|+++
T Consensus 370 ~~G~l~~Gk~ADlvv~d~~~~~~~~~~~~~~~~~~d~~~~lv~~~~--~~~V~~v~VdG~~v~~~ 432 (433)
T PRK09228 370 RIGNLAPGKEADFVVLDPAATPLLALRTARAESLEELLFALMTLGD--DRAVAETYVAGRPVYRR 432 (433)
T ss_pred CCcccCCCCCCCEEEEcCCCCccccchhcccCCHHHHHHHHhhcCC--ccceeEEEECCEEeccC
Confidence 89999999999999999876433211 011223333455544 56899999999999875
|
|
| >TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=289.42 Aligned_cols=354 Identities=18% Similarity=0.198 Sum_probs=242.5
Q ss_pred EEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccccccccccccc----CCC--CChhhHHH
Q 009282 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF----MGS--ETIDDFFS 129 (538)
Q Consensus 56 ~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~----~~~--~~~~~~~~ 129 (538)
+|+|++|+++++...++|.|+||+|++|++... ...++||++|++|+|||||+|+|..... .+. ...+.+..
T Consensus 1 ~i~~~~vv~~~~~~~~~i~i~dg~I~~i~~~~~--~~~~~iD~~G~~v~PGlID~H~h~~e~~~~prp~~~~~~~~~~~~ 78 (376)
T TIGR02318 1 VLSNARLVLEDEVVEGSVVIEDGAIADIGEGPV--ALAEAIDGEGDLLLPGLIDLHTDNLERHMSPRPGVDWPIDAAIVE 78 (376)
T ss_pred CEeCeEEECCCceEeeeEEEECCEEEEecCCCC--CCCceEeCCCCEEeccEEEcccCccccCcCCCCCCCcchHHHHHH
Confidence 489999999887766799999999999987432 2466899999999999999999987720 032 12267888
Q ss_pred HHHHHHhCCcEEEecccCCC----C-C---CHHHHHHHHHHHhcc--cceeeeeeeeeecCChhhHHHHHHHHHHcCCcE
Q 009282 130 GQAAALAGGTTMHIDFVIPI----N-G---SLTAGFEAYEKKAKN--SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~----~-~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (538)
..++++++||||++|+.... . . .....++.......+ ..+++++|.++.....+..+++..+. +.|...
T Consensus 79 ~~~~~aa~GiTT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~h~~~e~~~~~~~~~l~~~~-~~g~~~ 157 (376)
T TIGR02318 79 HDKQLAAAGITTVFDALALGDTESGGRRPDNLRRMIDAISEARDRGLLRADHRLHLRCELPNEEVLPELEELI-DDPRVD 157 (376)
T ss_pred HHHHHhhCCcceEEeeEEecccCCcCccHHHHHHHHHHHHHhhhcCchhhhceeEEEEEecCccHHHHHHHHh-cCCCcC
Confidence 88999999999999995322 1 1 223333333333333 77899999988766666788888887 889999
Q ss_pred EEEEeeeCCC--ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHH
Q 009282 200 FKFFMAYKGS--FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (538)
Q Consensus 200 ik~~~~~~~~--~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~ 277 (538)
+|.|++..+. +..+.+.+.+.+.. +.| ..|++....+...... .+. ...+.+.++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~e~~~~~~~~~~~---~~~-------------~~~e~i~~~v~ 216 (376)
T TIGR02318 158 LISLMDHTPGQRQFRDLEKYREYYRG--KRG---LSDDEFDEIVEERIAR---RAE-------------YGLANRSEIAA 216 (376)
T ss_pred EEEEeCCCCCcccccCHHHHHHHHHh--hcC---CCHHHHHHHHHHHHHH---Hhh-------------ccHHHHHHHHH
Confidence 9999875432 24456666666644 555 6677765443322221 111 11478999999
Q ss_pred HHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccc-eeecC-CCCCccc--HHHHH
Q 009282 278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK-YVMSP-PIRASGH--NKALQ 353 (538)
Q Consensus 278 ~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p-~~r~~~~--~~~l~ 353 (538)
++++.|.++ ..|..... +.++.+++.|+.++-.+. ..+.... ....|.. ....| ++|.... ...++
T Consensus 217 ~A~~~G~~v-~sH~~~~~--e~i~~a~~~Gv~~~E~~~------t~e~a~~-~~~~G~~v~~~~p~~~r~~~~~~~~~l~ 286 (376)
T TIGR02318 217 LARARGIPL-ASHDDDTP--EHVAEAHDLGVTISEFPT------TLEAAKE-ARSLGMQILMGAPNIVRGGSHSGNLSAR 286 (376)
T ss_pred HHHHCCCeE-EEecCCCH--HHHHHHHHCCCChhccCC------CHHHHHH-HHHcCCeEEECCccccccccccchHHHH
Confidence 999999987 77874222 456777778874432211 1111110 0111222 22233 3444333 67889
Q ss_pred HHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCC
Q 009282 354 AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRK 433 (538)
Q Consensus 354 ~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~ 433 (538)
++++.|+.++++||+.|.+. +...+.......++++.++++++|.|||+++|++ ++
T Consensus 287 ~~~~~G~~~~l~SD~~p~~~-----------------------l~~~~~~~~~~~gl~~~~al~~~T~npA~~lgl~-~~ 342 (376)
T TIGR02318 287 ELAHEGLLDVLASDYVPASL-----------------------LLAAFQLADDVEGIPLPQAVKMVTKNPARAVGLS-DR 342 (376)
T ss_pred HHHHCCCcEEEEcCCCcHHH-----------------------HHHHHHHHHhhcCCCHHHHHHHHhHHHHHHcCCC-CC
Confidence 99999999999999865321 1222222333346999999999999999999994 67
Q ss_pred cccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 434 GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
|+|++||.|||+++|.+.. ...+..||++|++||
T Consensus 343 G~I~~G~~ADlvvvd~~~~----------------------~~~v~~v~~~G~~v~ 376 (376)
T TIGR02318 343 GSIAPGKRADLVRVHRVDG----------------------VPRIRAVWRAGRRVY 376 (376)
T ss_pred CcCCCCCcccEEEEcCCCC----------------------CccceEEEECCEEeC
Confidence 9999999999999996311 136889999999986
|
This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. |
| >COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=304.60 Aligned_cols=371 Identities=20% Similarity=0.253 Sum_probs=240.3
Q ss_pred cccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCC----CCCceEEecCCCeeeccccccccccccccC------
Q 009282 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM------ 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~----~~~~~vID~~G~~v~PGlID~H~H~~~~~~------ 119 (538)
..+++|+||+|+|++. .....|.|+||||++||++.+. .+.+++||++|++|+|||||+|.|+...-.
T Consensus 4 ~adlil~nG~i~T~~~~~p~aeAvaI~dGrI~avG~~~~~~~~~~~~t~viDL~Gk~v~PGfvDaH~Hl~~~G~~~~~~~ 83 (535)
T COG1574 4 AADLILHNGRIYTMDEARPTAEAVAIKDGRIVAVGSDAELKALAGPATEVIDLKGKFVLPGFVDAHLHLISGGLSLLELN 83 (535)
T ss_pred ccceeEECCEEEeccCCCcceeEEEEcCCEEEEEcChHHHHhhcCCCceEEeCCCCEeccccchhhHHHHHhhhhhhccc
Confidence 6789999999999986 3678999999999999986432 257899999999999999999999866400
Q ss_pred ------------------------------------------------------------------------------CC
Q 009282 120 ------------------------------------------------------------------------------GS 121 (538)
Q Consensus 120 ------------------------------------------------------------------------------~~ 121 (538)
|.
T Consensus 84 ~~~~~~~~~~~~~i~~~a~~~~~~~w~~~vG~g~~~~~~~~~~~t~~~lD~~~~~~Pv~l~r~~~H~a~~Ns~aL~~~Gi 163 (535)
T COG1574 84 LDGVRSLDDLLAALRRQAARTPPGQWVVVVGWGWDEQFWEERLPTLAELDAAAPDHPVLLIRLDGHVAVANSAALRLAGI 163 (535)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCCceEEEEcChhhhccccCCCcHHHhhccCCCCCEEEEeccChHHHHhHHHHHHcCC
Confidence 00
Q ss_pred C--------------------------------------ChhhHH----H-HHHHHHhCCcEEEecccCCCCCCHHHHHH
Q 009282 122 E--------------------------------------TIDDFF----S-GQAAALAGGTTMHIDFVIPINGSLTAGFE 158 (538)
Q Consensus 122 ~--------------------------------------~~~~~~----~-~~~~~l~~GvTt~~d~~~~~~~~~~~~~~ 158 (538)
. .++... . ..+.+.+.|||++.|+.. . ......+.
T Consensus 164 ~~~t~~p~gg~~~~d~~g~ptG~L~e~a~~~~~~~~~~~~~~~~~~~~~~~a~~~l~s~GiT~v~d~~~-~-~~~~~~~~ 241 (535)
T COG1574 164 TRDTPDPPGGIIGRDADGEPTGLLLENAQALVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMAG-Y-QGYYADYE 241 (535)
T ss_pred CCCCCCCCCCcccccCCCCCCeeehHhhHHHHHHhcCCCCchHHHHHHHHHHHHHHHhcCCeEEEcccc-c-ccchhHHH
Confidence 0 011111 0 233556899999999976 2 22223333
Q ss_pred HHHHHhcc--cceeeeeeeeeecCChhhHHHHHHHHHH------cCCcEEEEEeee----------------C---CCcc
Q 009282 159 AYEKKAKN--SCMDYGFHMAITKWDEVVSDEMEVMVKE------KGINSFKFFMAY----------------K---GSFM 211 (538)
Q Consensus 159 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~ik~~~~~----------------~---~~~~ 211 (538)
.+...... ..+.+........... +....... .....+|+|.+. + |...
T Consensus 242 ~~r~~~~~~~l~~rv~~~l~~~~~~~----~~~~~~~~~~~~~~~~~g~~K~f~Dgslg~rtA~l~~~y~d~~~~~G~~l 317 (535)
T COG1574 242 AYRALAAGGELPVRVALLLFTEDLKE----ERLDLLRQTGAKGLLQGGGVKLFADGSLGERTALLAAPYADGPGPSGELL 317 (535)
T ss_pred HHHHHHhcCcceEEEEeeccccchhh----HHHhhcccCCccceeecCceEEEEeCCCCcchhhccCcccCCCCCCCCcc
Confidence 33333322 3333332221111111 11111111 123355666652 1 4567
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
++.+++.++++.|.++|+++.+|+.++..++..++.+.. +.......+.+..+.|+
T Consensus 318 ~~~e~l~~~v~~a~~~gl~v~vHAiGD~Av~~~LdafE~------------------------~~~~~~~~~~r~rieH~ 373 (535)
T COG1574 318 LTEEELEELVRAADERGLPVAVHAIGDGAVDAALDAFEK------------------------ARKKNGLKGLRHRIEHA 373 (535)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEEechHHHHHHHHHHHH------------------------HhhhcCCccCCceeeee
Confidence 889999999999999999999999999888777755433 22222234677789999
Q ss_pred cCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 292 ~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
...++ ++++++++.|+ ++++.++++.....++.+ .+.. ......+ +++.++++|+++++|||++..
T Consensus 374 ~~v~~-~~i~R~~~Lgv--~~svQP~f~~~~~~~~~~-rlG~-~r~~~~~---------p~~~ll~~G~~la~gSD~Pv~ 439 (535)
T COG1574 374 ELVSP-DQIERFAKLGV--IASVQPNFLFSDGEWYVD-RLGE-ERASRSY---------PFRSLLKAGVPLAGGSDAPVE 439 (535)
T ss_pred eecCH-hHHHHHHhcCc--eEeeccccccccchHHHH-hhhh-hhhhccC---------cHHHHHHCCCeEeccCCCCCC
Confidence 99887 99999998885 455555444433222221 1111 1122222 378999999999999997543
Q ss_pred ChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCC
Q 009282 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 451 (538)
Q Consensus 372 ~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~ 451 (538)
+. +||......+++....-. ....+..||++|||++.|.++|++.+.++++|+|++||.|||+|+|.|+
T Consensus 440 ~~-------dP~~~i~~AVtr~~~~g~----~~~~~~~L~~~eAL~~yT~~~A~a~~~e~~~G~Le~G~~AD~~Vld~d~ 508 (535)
T COG1574 440 PY-------DPWLGIYAAVTRKTPGGR----VLGPEERLTREEALRAYTEGGAYASGAEGEKGSLEPGKLADFAVLDRDP 508 (535)
T ss_pred CC-------ChHHHHHHHHcCCCCCCC----CCccccccCHHHHHHHHhhhhHHhhhccccccccccCceeeEEEecCCc
Confidence 22 244322211111000000 0000115999999999999999999999999999999999999999654
Q ss_pred ceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 452 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
+.++++.++ ..+|..|+++|++||+.
T Consensus 509 -f~~~~~~i~-------------~~~v~~T~~~Gk~VY~~ 534 (535)
T COG1574 509 -FTVDPDSIK-------------DTKVVLTIVAGKVVYRA 534 (535)
T ss_pred -ccCChHHhc-------------cceEEEEEEcCeEeecC
Confidence 445444333 45899999999999985
|
|
| >COG1228 HutI Imidazolonepropionase and related amidohydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=293.52 Aligned_cols=344 Identities=23% Similarity=0.264 Sum_probs=212.9
Q ss_pred ccEEEECcEEEcCC-CceeeeEEEeCCEEEEecCC-CCCCCCceEEecCCCeeeccccccccccccccCCCCChh-----
Q 009282 53 SKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETID----- 125 (538)
Q Consensus 53 ~~~~i~n~~vv~~~-~~~~~~V~I~~grI~~Vg~~-~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~----- 125 (538)
..+++.+++.+++- ..+++.|+|+||||++||+. ...+++.++||++|++|+|||||+|+|+... +....+
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~~v~i~~GkI~~vg~~~~~~~~~~~viD~~G~~V~PGLID~HtHl~~~--~~~~~~~~~~~ 87 (406)
T COG1228 10 AMLATLAGRGLPGLGIIEDGAVLIEDGKIVAVGPEEIDIPAGAEVIDAKGKTVTPGLIDAHTHLGFG--GSRGGEFELRE 87 (406)
T ss_pred hhheeeccccCCCcceeecceEEEECCEEEEecCcccCCCCCCeEEeCCCCEEccceeecccccccc--CCccchhhhcc
Confidence 45788899988843 34679999999999999988 5667789999999999999999999999885 110000
Q ss_pred --------------------------------hHHHHHHHHHhCCcEEEecccCCCCC--CHHHHHHHHHHHhcccceee
Q 009282 126 --------------------------------DFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDY 171 (538)
Q Consensus 126 --------------------------------~~~~~~~~~l~~GvTt~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 171 (538)
.....+..++++|+|+.-........ ......+............+
T Consensus 88 ~~~~~~~i~~~~~gi~~~~~~~~~a~~~g~~~~~~~~l~~~~~~g~~~~e~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~ 167 (406)
T COG1228 88 AGASYTEILAAGGGILPLDRGFTTARDGGLKATALPRLKRAGSAGVTTGERKSGYGLDLETEGGHLRAAAGLKESRPVAV 167 (406)
T ss_pred cCccHHHHHHhcCChhhhHHHHHHHhhcchHHHHHHHHHHHHHcCCcccceeeeecccccccccccchhhhccccccccc
Confidence 00111223355666665433221111 00001111111110000111
Q ss_pred ee-----ee--eeecCC-hhhHHHHHHHHHHcCCcEEEEEee-eCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHH
Q 009282 172 GF-----HM--AITKWD-EVVSDEMEVMVKEKGINSFKFFMA-YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVF 242 (538)
Q Consensus 172 ~~-----~~--~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~-~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~ 242 (538)
.. +. ...... +...+.+..+........+.-+.+ .+....++.++++++++.|++.|+++.+|++..+
T Consensus 168 ~~t~~~~~~~~~~~~~~r~~~~~g~~~~i~~~a~~~l~~~~d~~~~~~~fs~~e~~~~l~~a~~~g~~v~~HA~~~~--- 244 (406)
T COG1228 168 GSTPLAAHGVPEERKATREAYVAGARLLIKIVATGGLASFVDAFCEGGQFSPEEIRAVLAAALKAGIPVKAHAHGAD--- 244 (406)
T ss_pred cCccccccCCcccccchHHHHHHHHHHHHHHHHhccccchhhccccccccCHHHHHHHHHHHHHCCCceEEEecccc---
Confidence 10 00 001111 112222222111111111222222 2344667899999999999999999999998775
Q ss_pred HHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHH--cCCcEEEeccccccc
Q 009282 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK--AGQRVIGEPVVSGLV 320 (538)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~--~g~~v~~~~~~~~~~ 320 (538)
..+.+.+.|.. .+.|....+. +.+..+++ .|.++ +...+..
T Consensus 245 -g~~~A~~~g~~--------------------------------s~~H~~~ld~-~~~~~~a~~~~g~~~-~~l~p~~-- 287 (406)
T COG1228 245 -GIKLAIRLGAK--------------------------------SAEHGTLLDH-ETAALLAEKGAGTPV-PVLLPRT-- 287 (406)
T ss_pred -hHHHHHHhCcc--------------------------------eehhhhhcCH-hHHHHHhhccCCCcc-ccccchh--
Confidence 33333344443 3566666555 77888888 66531 2222110
Q ss_pred cCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHH
Q 009282 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 400 (538)
.+.. .......++.+++.|++++++||+.+.+.. ..+.+.
T Consensus 288 ---------~~~l-----------~e~~~~~~~~l~~~GV~vai~TD~~~~~~~--------------------~~l~~~ 327 (406)
T COG1228 288 ---------KFEL-----------RELDYKPARKLIDAGVKVAIGTDHNPGTSH--------------------GSLALE 327 (406)
T ss_pred ---------hhhh-----------hcccchhHHHHHHCCCEEEEEcCCCCCchh--------------------hHHHHH
Confidence 0110 001234588999999999999998876531 133444
Q ss_pred HHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEE
Q 009282 401 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEV 480 (538)
Q Consensus 401 ~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 480 (538)
+..++..+ ||++|||+++|.|||++||+++++||||+||.|||||||.|++.++ +|... ...+.+
T Consensus 328 m~l~~~~g-mtp~EaL~a~T~naA~alG~~~~~Gsle~Gk~ADlvv~~~dp~~~i------------~y~~~--~~~v~~ 392 (406)
T COG1228 328 MALAVRLG-MTPEEALKAATINAAKALGLADKVGSLEPGKDADLVVWDGDPLADI------------PYFLG--LNKVEA 392 (406)
T ss_pred HHHHHHcC-CCHHHHHHHHHHHHHHHcCCccccccccCCCccCEEEEcCCChhhc------------ccccc--CCceEE
Confidence 44556677 9999999999999999999999999999999999999999987554 22211 468999
Q ss_pred EEECCEEEEECCe
Q 009282 481 TIAGGRVVWENDE 493 (538)
Q Consensus 481 V~v~G~~V~~~~~ 493 (538)
||++|+++++.+.
T Consensus 393 v~k~G~~~~~~~~ 405 (406)
T COG1228 393 VIKDGKVVYERGS 405 (406)
T ss_pred EEECCEEeecCCC
Confidence 9999999998764
|
|
| >TIGR02967 guan_deamin guanine deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=297.47 Aligned_cols=355 Identities=20% Similarity=0.195 Sum_probs=227.8
Q ss_pred eeeeEEEeCCEEEEecCCCCC----CCCceEEecCCCeeeccccccccccccccC-CC--------------------CC
Q 009282 69 QIADVYVEDGIVVAVQPNINV----GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS--------------------ET 123 (538)
Q Consensus 69 ~~~~V~I~~grI~~Vg~~~~~----~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~--------------------~~ 123 (538)
++++|+|+||||++||+.... +.+.++||++|++|+|||||+|+|+..... +. .+
T Consensus 5 ~~~~V~V~~g~I~~Vg~~~~~~~~~~~~~~viD~~g~~v~PGlId~H~Hl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (401)
T TIGR02967 5 EDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHIHYPQTEMIASYGEQLLEWLEKYTFPTEARFAD 84 (401)
T ss_pred eceEEEEECCEEEEecCcchhhhccCCCCeEEeCCCCEEecceeecccCchhhhhcccCCchHHHHHhhCcCccccccCC
Confidence 478999999999999985332 335689999999999999999999875311 10 01
Q ss_pred hhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee-eee----cCChhhHHHHHHHHHH
Q 009282 124 IDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-AIT----KWDEVVSDEMEVMVKE 194 (538)
Q Consensus 124 ~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~ 194 (538)
++... .....++++||||++|+............++..+.+.+......... ..+ ....+..++..++.++
T Consensus 85 ~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~ 164 (401)
T TIGR02967 85 PDHAEEVAEFFLDELLRNGTTTALVFATVHPESVDALFEAALKRGMRMIAGKVLMDRNAPDYLRDTAESSYDESKALIER 164 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEEeccccCHHHHHHHHHHHHHCCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHHH
Confidence 22221 22356789999999998643322223344555555554333222111 001 1112333444444432
Q ss_pred -cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhc-CCeEEEEcC-ChhhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 195 -KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 195 -~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
.+...++....++..+.++.+.++++++.|+++ |+++++|+. +..+.....+. +|.. +.
T Consensus 165 ~~~~g~i~~~~~~~~~~~~s~e~l~~~~~~A~~~~g~~v~~H~~e~~~~~~~~~~~---~~~~---------~~------ 226 (401)
T TIGR02967 165 WHGKGRLLYAVTPRFAPTSSPEQLAAAGELAKEYPDVYVQTHLSENKDEIAWVKEL---FPEA---------KD------ 226 (401)
T ss_pred HhCcCCceEEEECCcCCcCcHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHH---cCCC---------Cc------
Confidence 344457777787777788999999999999999 999999995 44433333321 2221 00
Q ss_pred HHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHH
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (538)
..+.++....++.++++.|+...++ +.++++++.|+.++.||... +..+.+. .+
T Consensus 227 ~~~~l~~~g~lg~~~~~~H~~~~~~-~~~~~l~~~g~~v~~~P~~~-------------~~~~~g~------------~~ 280 (401)
T TIGR02967 227 YLDVYDHYGLLGRRSVFAHCIHLSD-EECQRLAETGAAIAHCPTSN-------------LFLGSGL------------FN 280 (401)
T ss_pred HHHHHHHCCCCCCCeEEEecccCCH-HHHHHHHHcCCeEEEChHHH-------------HHhccCC------------CC
Confidence 1112222334567888999998887 88999999999999888752 1111111 22
Q ss_pred HHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCC
Q 009282 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 431 (538)
Q Consensus 352 l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~ 431 (538)
++.++++|+++++|||....+.. . ++. ++.....+.++. ..++++.++|+++|.|||+++|+++
T Consensus 281 ~~~~~~~Gv~v~lGtD~~~~~~~-~-----~~~---------~~~~~~~~~~~~-~~~~~~~~~l~~aT~~~A~~lg~~~ 344 (401)
T TIGR02967 281 LKKALEHGVRVGLGTDVGGGTSF-S-----MLQ---------TLREAYKVSQLQ-GARLSPFEAFYLATLGGARALDLDD 344 (401)
T ss_pred HHHHHHCCCeEEEecCCCCCCCc-C-----HHH---------HHHHHHHHhhhc-CCCCCHHHHHHHHHHHHHHHhCCcC
Confidence 78899999999999996432111 0 111 112222221222 2459999999999999999999977
Q ss_pred CCcccccCCCccEEEEcCCCceeec----cC-cccCCCCCCccCCeEEeeEEEEEEECC
Q 009282 432 RKGAILVGSDADIIIFNPNSSFEIT----AR-SHHSRLDTNVYEGRRVKGKVEVTIAGG 485 (538)
Q Consensus 432 ~~GsI~~Gk~ADlvvld~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~v~~V~v~G 485 (538)
++|+|++||.||||++|.+.+...+ +. ...++.....|.+. ..+|+.|||+|
T Consensus 345 ~~G~i~~G~~ADlvi~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~v~~v~v~G 401 (401)
T TIGR02967 345 RIGNFEPGKEADFVVLDPAATPLLALRFEGADTLEDKLFKLMYLGD--DRNVAETYVAG 401 (401)
T ss_pred CccccCCCCccCEEEEcCCCCcccccccccccchhhHHHHheeecC--ccceeEEEeCC
Confidence 8999999999999999987654322 00 11234445566654 56899999998
|
This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. |
| >cd01303 GDEase Guanine deaminase (GDEase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=296.35 Aligned_cols=356 Identities=18% Similarity=0.153 Sum_probs=228.9
Q ss_pred eeeeEEEeCCEEEEecCCCC----CCCCceEEecCCCeeeccccccccccccccC-CC---------------------C
Q 009282 69 QIADVYVEDGIVVAVQPNIN----VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------------------E 122 (538)
Q Consensus 69 ~~~~V~I~~grI~~Vg~~~~----~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~---------------------~ 122 (538)
++++|+|+||+|++||+... .++++++||++|++|+|||||+|+|++.... +. .
T Consensus 25 ~~g~V~v~~g~I~~vG~~~~~~~~~~~~~~viD~~g~~v~PGlVn~H~Hl~~~~~rg~~~~~~l~~wl~~~~~~~e~~~~ 104 (429)
T cd01303 25 EDGLIVVVDGNIIAAGAAETLKRAAKPGARVIDSPNQFILPGFIDTHIHAPQYANIGSGLGEPLLDWLETYTFPEEAKFA 104 (429)
T ss_pred CCeEEEEECCEEEEeCchhhhhhhcCCCceEEcCCCCEEecceeeeeecccccccccccCCCcHHHHHHhhhhHHHHhcC
Confidence 58899999999999998542 2345789999999999999999999976421 11 0
Q ss_pred ChhhH----HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeee-ee----cCChhhHHHHHHHHH
Q 009282 123 TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-IT----KWDEVVSDEMEVMVK 193 (538)
Q Consensus 123 ~~~~~----~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~ 193 (538)
+++.. ...+..++++||||++|+...........+++..+.+.+..+....... .+ ....+.++....+.+
T Consensus 105 ~~~~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 184 (429)
T cd01303 105 DPAYAREVYGRFLDELLRNGTTTACYFATIHPESTEALFEEAAKRGQRAIAGKVCMDRNAPEYYRDTAESSYRDTKRLIE 184 (429)
T ss_pred CHHHHHHHHHHHHHHHHhCCceEEEeecccChhHHHHHHHHHHHhCCeEEEeeeeecCCCCcccccCHHHHHHHHHHHHH
Confidence 11111 1223456899999999876432223345556666666665443322211 01 111122333333332
Q ss_pred H-cCC-cEEEEEeeeCCCccCCHHHHHHHHHHHHhcC-CeEEEEcCC-hhhHHHHHHHHHHcCCCCcccccccCCchHHH
Q 009282 194 E-KGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEG 269 (538)
Q Consensus 194 ~-~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 269 (538)
. .+. ..+...+.++..+.++.+.++++++.|+++| +++++|+.+ ..+.....+ .+|-.. +
T Consensus 185 ~~~~~~~~v~~~~~p~~~~~~s~e~l~~~~~~A~~~g~~~v~~H~~e~~~e~~~~~~---~~g~~~-------~------ 248 (429)
T cd01303 185 RWHGKSGRVKPAITPRFAPSCSEELLAALGKLAKEHPDLHIQTHISENLDEIAWVKE---LFPGAR-------D------ 248 (429)
T ss_pred HHhCcCCceEEEEecCcCCcCCHHHHHHHHHHHHHCCCCeEEEeeCCCHHHHHHHHH---HcCCCC-------C------
Confidence 2 222 4566667777778889999999999999999 999999944 433322221 122000 0
Q ss_pred HHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccH
Q 009282 270 EATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHN 349 (538)
Q Consensus 270 ~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 349 (538)
..+.+.....++.++.+.|+...++ +.++++++.|+.|+.||.+. +..+.+.
T Consensus 249 --p~~~l~~~G~l~~~~~l~H~~~l~~-~~~~~l~~~g~~v~~~P~sn-------------~~l~~g~------------ 300 (429)
T cd01303 249 --YLDVYDKYGLLTEKTVLAHCVHLSE-EEFNLLKERGASVAHCPTSN-------------LFLGSGL------------ 300 (429)
T ss_pred --HHHHHHHCCCCCCCcEEEeCCCCCH-HHHHHHHHcCCEEEECccch-------------hhhccCC------------
Confidence 0111222234467889999999887 88999999999999988752 2222221
Q ss_pred HHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh-----hcCCCCHHHHHHHHhHhHH
Q 009282 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV-----ESGQISVTDYVRLTSTECA 424 (538)
Q Consensus 350 ~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~-----~~~~ls~~eal~~aT~~~A 424 (538)
.+++.++++|+++++|||+...+.. +++. ++.+.....+.. ...+++++++|+++|.|||
T Consensus 301 ~~~~~~~~~Gv~v~lGtD~~~~~~~------d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~aT~~gA 365 (429)
T cd01303 301 FDVRKLLDAGIKVGLGTDVGGGTSF------SMLD---------TLRQAYKVSRLLGYELGGHAKLSPAEAFYLATLGGA 365 (429)
T ss_pred CCHHHHHHCCCeEEEeccCCCCCCc------cHHH---------HHHHHHHHHHhhccccCCcCCCCHHHHHHHHhhHHH
Confidence 2378999999999999997533211 1111 222222221211 2245899999999999999
Q ss_pred HHcCCCCCCcccccCCCccEEEEcCCCceeeccC-----cccCCCCCCccCCeEEeeEEEEEEECC
Q 009282 425 RIFNVYPRKGAILVGSDADIIIFNPNSSFEITAR-----SHHSRLDTNVYEGRRVKGKVEVTIAGG 485 (538)
Q Consensus 425 ~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~V~v~G 485 (538)
+++|+++++|+|++||+||||++|.+++....+. .+.++.....|.+. ...|+.|||+|
T Consensus 366 ~~lg~~~~~Gsle~Gk~ADlvvld~~~~~~~~p~~~~~~~~~d~~~~lV~~~~--~~~V~~v~V~G 429 (429)
T cd01303 366 EALGLDDKIGNFEVGKEFDAVVIDPSATPLLADRMFRVESLEEALFKFLYLGD--DRNIREVYVAG 429 (429)
T ss_pred HHcCCCCCCcCcCCCCccCEEEEcCCCccccccccccccchhhHHHHHeeeCC--CCCeeEEEeCC
Confidence 9999988899999999999999998876433111 11344445566654 56899999998
|
Guanine deaminase is an aminohydrolase responsible for the conversion of guanine to xanthine and ammonia, the first step to utilize guanine as a nitrogen source. This reaction also removes the guanine base from the pool and therefore can play a role in the regulation of cellular GTP and the guanylate nucleotide pool. |
| >PRK12394 putative metallo-dependent hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=286.52 Aligned_cols=345 Identities=15% Similarity=0.201 Sum_probs=223.4
Q ss_pred cccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
+++++|+|++|+++.. ..+++|+|+||+|++|++... +...++||++|++|+|||||+|+|+... +. +....
T Consensus 2 ~~~~li~~~~i~~~~~~~~~~~~i~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PGliD~H~H~~~~--g~---~~~~~ 75 (379)
T PRK12394 2 KNDILITNGHIIDPARNINEINNLRIINDIIVDADKYPV-ASETRIIHADGCIVTPGLIDYHAHVFYD--GT---EGGVR 75 (379)
T ss_pred CccEEEECcEEECCCCCcccccEEEEECCEEEEEcCCCC-CCCCeEEECCCCEEECCEEEeeecCCCC--Cc---ccccC
Confidence 4578999999998763 356799999999999987532 2346899999999999999999998654 21 11112
Q ss_pred HHHHHHhCCcEEEecccCCCCCCHHHHHHHH----HHHhcccceeeeeeeeeec----CCh-h--hHHHHHHHHHH--cC
Q 009282 130 GQAAALAGGTTMHIDFVIPINGSLTAGFEAY----EKKAKNSCMDYGFHMAITK----WDE-V--VSDEMEVMVKE--KG 196 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~-~--~~~~~~~~~~~--~g 196 (538)
....++++||||++|++..... ........ .+.+.+.++.+++...... ... + ..++..++.++ .+
T Consensus 76 ~~~~~l~~G~Ttv~d~g~~~~~-~~~~~~~~~~a~~~~gira~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (379)
T PRK12394 76 PDMYMPPNGVTTVVDAGSAGTA-NFDAFYRTVICASKVRIKAFLTVSPPGQTWSGYQENYDPDNIDENKIHALFRQYRNV 154 (379)
T ss_pred HHHHHHhCCccEEEECCCCCcc-cHHHHHHHHhhhhcceeeeEEeeecccccccCcccccChhHCCHHHHHHHHHHCcCc
Confidence 2355889999999999754332 22222222 2222344455444432211 011 1 13456666543 45
Q ss_pred CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 197 INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 197 ~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
..++|++.........+.+.+++.++.|+++|+++++|+.+... ..+.
T Consensus 155 ~~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~------------------------------- 203 (379)
T PRK12394 155 LQGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVAVHSTHPVLPMKEL------------------------------- 203 (379)
T ss_pred EEEEEEEEecccccccchHHHHHHHHHHHHcCCCEEEEeCCCCccHHHH-------------------------------
Confidence 66777665433222567899999999999999999999965421 1111
Q ss_pred HHHHHHcCCCEEEEeccC-------H---HHHHHHHHHHHcCCcEE-EeccccccccCcccccCCCcccccceeecCCCC
Q 009282 276 IRLAEFVNTPLYVVHVMS-------M---DAMEEIAKARKAGQRVI-GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~~-------~---~~~~~i~~~~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 344 (538)
....+....+.||.. . ...+.+..++++|+.+. .+..
T Consensus 204 ---~~~l~~g~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~----------------------------- 251 (379)
T PRK12394 204 ---VSLLRRGDIIAHAFHGKGSTILTEEGAVLAEVRQARERGVIFDAANGR----------------------------- 251 (379)
T ss_pred ---HHhcCCCCEEEecCCCCCCCcCCCCCCChHHHHHHHhCCeEEEecCCc-----------------------------
Confidence 111222224555543 1 11356777888886442 1111
Q ss_pred CcccHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhH
Q 009282 345 ASGHNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEC 423 (538)
Q Consensus 345 ~~~~~~~l~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~ 423 (538)
...+...++.++++|+ ++++|||+.+.+.... ++ ..+...++++.. .+++++++++++|.||
T Consensus 252 s~~~~~~~~~~l~~G~~~~~lgTD~~~~~~~~~-----~~-----------~~l~~~~~~~~~-~~~~~~~~~~~at~~~ 314 (379)
T PRK12394 252 SHFDMNVARRAIANGFLPDIISSDLSTITKLAW-----PV-----------YSLPWVLSKYLA-LGMALEDVINACTHTP 314 (379)
T ss_pred cccchHHHHHHHHCCCCceEEECCCCCCCcccC-----cc-----------chHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 0112244678999995 8999999987652211 11 123445545554 4599999999999999
Q ss_pred HHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEee----EEEEEEECCEEEEECCe
Q 009282 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG----KVEVTIAGGRVVWENDE 493 (538)
Q Consensus 424 A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~V~v~G~~V~~~~~ 493 (538)
|+++|++++.|+|++|+.|||+++|.+.++... . -+.+..+.+ .|..||++|++||++-.
T Consensus 315 a~~~g~~~~~G~i~~G~~ADl~~~~~~~~~~~~-~---------d~~g~~~~~~~~~~v~~t~v~G~~v~~~~~ 378 (379)
T PRK12394 315 AVLMGMAAEIGTLAPGAFADIAIFKLKNRHVEF-A---------DIHGETLTGTHVLVPQMTIKSGEILYRQID 378 (379)
T ss_pred HHHhCCCCCCCccCCCCccCEEEEecCcCccee-c---------cCCCCEEEeeeecceEEEEECCEEEEecCC
Confidence 999999657899999999999999988775421 1 134443344 79999999999998543
|
|
| >PRK09356 imidazolonepropionase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=291.20 Aligned_cols=345 Identities=21% Similarity=0.208 Sum_probs=216.3
Q ss_pred CcccEEEECcEEEcCCC--------ceeeeEEEeCCEEEEecCCCCCC--CCceEEecCCCeeeccccccccccccccCC
Q 009282 51 SSSKILIKGGTVVNAHH--------QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120 (538)
Q Consensus 51 ~~~~~~i~n~~vv~~~~--------~~~~~V~I~~grI~~Vg~~~~~~--~~~~vID~~G~~v~PGlID~H~H~~~~~~~ 120 (538)
|+++++|+|++|+++++ .++++|+|+||||++||+..+.+ ...++||+.|++|+|||||+|+|+......
T Consensus 1 ~~~~~li~~~~v~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PG~id~H~Hl~~~~~~ 80 (406)
T PRK09356 1 MMADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEADLPAAYAAEVIDAGGKLVTPGLIDCHTHLVFGGNR 80 (406)
T ss_pred CCceEEEECCEEEecCCCCccccccccCcEEEEECCEEEEEeCccccccccCceEEECCCCEEeeceEecCCCcccCCCc
Confidence 35679999999998763 24789999999999999865432 236899999999999999999999764110
Q ss_pred ---------C----------------------CChhhHH----HHHHHHHhCCcEEEecccCCCCC--CHHHHHHHHHHH
Q 009282 121 ---------S----------------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKK 163 (538)
Q Consensus 121 ---------~----------------------~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~--~~~~~~~~~~~~ 163 (538)
. .+++++. ..+..++++||||+.+....... ...+.++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~ 160 (406)
T PRK09356 81 ANEFELRLQGVSYEEIAAQGGGILSTVRATRAASEEELFAQALPRLDALLAEGVTTVEIKSGYGLDLETELKMLRVARRL 160 (406)
T ss_pred HHHHHHHHCCCcHHHHHHhcCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 0 0111221 12345688999999976422111 112233333333
Q ss_pred hcccceeee--eee--eeec---CC-hhhHHH----HHHH-HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCe
Q 009282 164 AKNSCMDYG--FHM--AITK---WD-EVVSDE----MEVM-VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230 (538)
Q Consensus 164 ~~~~~~~~~--~~~--~~~~---~~-~~~~~~----~~~~-~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~ 230 (538)
+.+..+... +.. .... .. .+.... +.+. ....+...++.+.. ...++.+.++++++.|+++|++
T Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~~~~A~~~g~~ 237 (406)
T PRK09356 161 GEEHPVDVVTTFLGAHAVPPEYKGRPDAYIDLVCEEMLPAVAEEGLADAVDVFCE---TGAFSVEQSERVLEAAKALGLP 237 (406)
T ss_pred hhhCCCceEeeeeecccCCccccCCHHHHHHHHHHHHhHHHHhcCCcceEEEEec---CCCCCHHHHHHHHHHHHHCCCC
Confidence 332211111 100 0010 01 111221 1111 11223555554332 3456799999999999999999
Q ss_pred EEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcE
Q 009282 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRV 310 (538)
Q Consensus 231 v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v 310 (538)
+.+|+.+.... ...+... ..+ ...+.|+...++ +.++++++.|+.+
T Consensus 238 v~~H~~~~~~~-~~~~~~~-------------------------------~~~-~~~~~H~~~~~~-~~~~~la~~g~~~ 283 (406)
T PRK09356 238 VKIHAEQLSNL-GGAELAA-------------------------------EYG-ALSADHLEYLDE-AGIAAMAEAGTVA 283 (406)
T ss_pred EEEEEecccCC-CHHHHHH-------------------------------HcC-CcEehHhhcCCH-HHHHHHHHhCCEE
Confidence 99999642110 0011111 111 224668777766 7899999999988
Q ss_pred EEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCC-CChhhhhcCccCcccCCCC
Q 009282 311 IGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA-FNSTQKAFGIDDFRKIPNG 389 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~-~~~~~~~~~~~~~~~~~~g 389 (538)
+.+|..... .+.. ...+++.++++|+++++|||+.+ .++.
T Consensus 284 ~~~P~~~~~-------------l~~~-----------~~~~~~~l~~~Gi~v~lgtD~~~~~~~~--------------- 324 (406)
T PRK09356 284 VLLPGAFYF-------------LRET-----------QYPPARLLRDAGVPVALATDFNPGSSPT--------------- 324 (406)
T ss_pred EECccchhh-------------cCcc-----------cCchHHHHHHCCCeEEEeCCCCCCCChh---------------
Confidence 888764211 1000 01237888999999999999753 2111
Q ss_pred CcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCcc
Q 009282 390 VNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVY 469 (538)
Q Consensus 390 ~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~ 469 (538)
..+...+...+...+++++++|+++|.|||+++|+++++|+|++||.||||++|.+++..+ ++
T Consensus 325 -----~~~~~~~~~~~~~~~l~~~~~l~~~T~~~A~~~g~~~~~G~i~~G~~AD~vvld~~~~~~~------------~~ 387 (406)
T PRK09356 325 -----ESLLLAMNMACTLFRLTPEEALAAVTINAARALGRQDTHGSLEVGKKADLVIWDAPSPAEL------------PY 387 (406)
T ss_pred -----HHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcCCEEEECCCchhhh------------hh
Confidence 1122222222334569999999999999999999988899999999999999998865322 11
Q ss_pred CCeEEeeEEEEEEECCEEEEE
Q 009282 470 EGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 470 ~~~~~~~~v~~V~v~G~~V~~ 490 (538)
... ..+|..||++|++||+
T Consensus 388 ~~~--~~~v~~v~v~G~~vy~ 406 (406)
T PRK09356 388 HFG--VNPVETVVKNGEVVVD 406 (406)
T ss_pred hhC--CCCccEEEECCEEeeC
Confidence 111 3589999999999985
|
|
| >cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=291.77 Aligned_cols=352 Identities=20% Similarity=0.198 Sum_probs=213.1
Q ss_pred EECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCC---------------
Q 009282 57 IKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS--------------- 121 (538)
Q Consensus 57 i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~--------------- 121 (538)
|+|++|+|+. ..+++|+|+||+|++||+..+.+++.++||++|++|+|||||+|+|+...+...
T Consensus 2 ~~~~~~~~~~-~~~~~v~I~~g~I~~Vg~~~~~~~~~~vID~~g~~v~PGlId~H~H~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T cd01293 2 LRNARLADGG-TALVDIAIEDGRIAAIGPALAVPPDAEEVDAKGRLVLPAFVDPHIHLDKTFTGGRWPNNSGGTLLEAII 80 (398)
T ss_pred eeeeEEeCCC-ceEEEEEEECCEEEEEecCCCCCCCCceEeCCCCEEccCEeeeeeccCcccccCCCCCCCccccHHHHH
Confidence 7899999974 578899999999999998765455789999999999999999999997631110
Q ss_pred --------CChhhH----HHHHHHHHhCCcEEEecccCCCCC---CHHHHHHHHH-HHhcccceeeeeeeeeecCC-hhh
Q 009282 122 --------ETIDDF----FSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYE-KKAKNSCMDYGFHMAITKWD-EVV 184 (538)
Q Consensus 122 --------~~~~~~----~~~~~~~l~~GvTt~~d~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~ 184 (538)
.+++++ ...+..++++||||++++...... ...+.+.... +...+............... ++.
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (398)
T cd01293 81 AWEERKLLLTAEDVKERAERALELAIAHGTTAIRTHVDVDPAAGLKALEALLELREEWADLIDLQIVAFPQHGLLSTPGG 160 (398)
T ss_pred HHHHHHhccChHHHHHHHHHHHHHHHHcChhheeeeecccccccchHHHHHHHHHHHhhccceEEEEeccCccccCCCCH
Confidence 122222 223456789999999876543221 1111221111 11111111110000000011 333
Q ss_pred HHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHHHHcCCCCcccccccC
Q 009282 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSR 263 (538)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 263 (538)
.+.+++.. +.|...++.+ .+.....++.+.++++++.|+++|+++.+|+.+.. ...
T Consensus 161 ~~~v~~~~-~~g~~~~~~~-~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~--------------------- 217 (398)
T cd01293 161 EELMREAL-KMGADVVGGI-PPAEIDEDGEESLDTLFELAQEHGLDIDLHLDETDDPGS--------------------- 217 (398)
T ss_pred HHHHHHHH-HhCCCEEeCC-CCCcCCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCcch---------------------
Confidence 44444544 4455444322 22223455789999999999999999999995432 111
Q ss_pred CchHHHHHHHHHHHHHHHcC--CCEEEEeccCHHH------HHHHHHHHHcCCcEEEeccccccccCcccccCCCccccc
Q 009282 264 PPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (538)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~--~~~~~~h~~~~~~------~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (538)
..+.++++.....+ .++.+.|+..... .+.++++++.|+.+++||.+......... .+.
T Consensus 218 ------~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~s~~~l~~~~~----~~~--- 284 (398)
T cd01293 218 ------RTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAEAGISVVSLPPINLYLQGRED----TTP--- 284 (398)
T ss_pred ------hHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHHcCCeEEeCCCcchhhccccc----CCC---
Confidence 11122233333333 3678899876531 25689999999999988875322111100 000
Q ss_pred ceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCC----C
Q 009282 336 KYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI----S 411 (538)
Q Consensus 336 ~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~l----s 411 (538)
......++..++++|+++++|||.... ++ .+++... +...+..+....++ +
T Consensus 285 ---------~~~~~~~~~~~~~~Gv~v~lGTD~~~~----------~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~ 339 (398)
T cd01293 285 ---------KRRGVTPVKELRAAGVNVALGSDNVRD----------PW--YPFGSGD----MLEVANLAAHIAQLGTPED 339 (398)
T ss_pred ---------CCCCCCcHHHHHHCCCeEEECCCCCCC----------CC--cCCCCCC----HHHHHHHHHHHHcCCChhh
Confidence 001124489999999999999997421 00 0001000 00111111111123 3
Q ss_pred HHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEE
Q 009282 412 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 488 (538)
Q Consensus 412 ~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V 488 (538)
.+++|+++|.|+|+++|+ +.|+|++||.||||++|.|++.++.. ...++..||++|++|
T Consensus 340 ~~~al~~aT~~~A~~lg~--~~G~l~~Gk~ADlv~~d~~~~~~~~~----------------~~~~~~~v~~~G~~~ 398 (398)
T cd01293 340 LALALDLITGNAARALGL--EDYGIKVGCPADLVLLDAEDVAEAVA----------------RQPPRRVVIRKGRVV 398 (398)
T ss_pred HHHHHHhcChhhhhhcCC--cCcccccCCcceEEEECCCCHHHHHh----------------cCCCccEEEECCEEC
Confidence 478999999999999999 57999999999999999987754421 024789999999875
|
Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric. |
| >TIGR02022 hutF formiminoglutamate deiminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-34 Score=293.51 Aligned_cols=371 Identities=16% Similarity=0.106 Sum_probs=231.5
Q ss_pred EEEECcEEEcCCCceeeeEEEe-CCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-C------------
Q 009282 55 ILIKGGTVVNAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G------------ 120 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~-~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~------------ 120 (538)
+-++|+.+-++ -.++.+|+|+ ||||++||+....++. .+..|++|+|||||+|+|++..+. |
T Consensus 4 ~~~~~~~~~~~-~~~~~~i~I~~~g~I~~vg~~~~~~~~---~~~~g~lvlPGfVn~H~H~~~~~~rg~~~~~~~~~~~l 79 (455)
T TIGR02022 4 YWAERALLPDG-WAEGVRIAVAADGRILAIETGVPAAPG---AERLSGPLLPGLANLHSHAFQRAMAGLAEVAGSGGDSF 79 (455)
T ss_pred hhHHhccCCCc-cccCceEEEecCCEEEEecCCCCcccc---cccCCCEEccCCcccCcchhhHhhcCCcccccCCCCCH
Confidence 34566666322 1257899999 9999999986543222 234689999999999999976411 0
Q ss_pred ------------CCChhhHHH----HHHHHHhCCcEEEecccCCCC-----------CCHHHHHHHHHHHhcccceeeee
Q 009282 121 ------------SETIDDFFS----GQAAALAGGTTMHIDFVIPIN-----------GSLTAGFEAYEKKAKNSCMDYGF 173 (538)
Q Consensus 121 ------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 173 (538)
..++++++. .+..++++||||++|+..... ......+++..+.+.+..+...+
T Consensus 80 ~~w~~~~~~~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~G~R~~~~~~~ 159 (455)
T TIGR02022 80 WTWRELMYRFVDRLTPEQLQAIARQLYVEMLEAGFTRVGEFHYLHHAPDGTPYADPAEMAERIAAAAADAGIGLTLLPVF 159 (455)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCCCEEEeeeeecccCCCccccchhhhHHHHHHHHHHhCCeEEeeeee
Confidence 112233322 234458899999999742110 01244555666665554333221
Q ss_pred eee-----eecC--------C-hhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-C
Q 009282 174 HMA-----ITKW--------D-EVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-N 237 (538)
Q Consensus 174 ~~~-----~~~~--------~-~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~ 237 (538)
... .... + ++..+....+.+. .+...+...+.+++.+.++.+.++++.+ ++++|+++++|+. +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~-a~~~g~~v~~H~~e~ 238 (455)
T TIGR02022 160 YAHSGFGGAAPNPGQRRFIHDVERFARLVEVLRRELAAQPAAVLGLAPHSLRAVTPEQLAAVLQ-ASDRQAPVHIHVAEQ 238 (455)
T ss_pred eecCCCCCCCCcccchhhccCHHHHHHHHHHHHHHhccCCceEEEEecCCCCcCCHHHHHHHHH-HHhCCCceEEEECCC
Confidence 110 0100 0 1122222333211 1223355556667777889999999999 8899999999994 4
Q ss_pred hhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccc
Q 009282 238 GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (538)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~ 317 (538)
..+..... ...|... ++.+ .....++.++.+.||...++ ++++++++.|+.+++||.+
T Consensus 239 ~~e~~~~~---~~~G~~~----------------v~~l-~~~g~l~~~~~~~H~~~l~~-~d~~~la~~g~~v~~~P~s- 296 (455)
T TIGR02022 239 QKEVDDCL---AWSGRRP----------------VEWL-LDHGPVDARWCLVHATHLTD-EETALLARSGAVAGLCPTT- 296 (455)
T ss_pred hHHHHHHH---HHhCCCH----------------HHHH-HHcCCCCCCEEEEEeecCCH-HHHHHHHHcCCeEEEChhh-
Confidence 43333222 2234321 1111 22234677889999999887 8899999999999999986
Q ss_pred ccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhH
Q 009282 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERM 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 397 (538)
++..+.++ +| +++++++|+++++|||.....+ ++. ++..
T Consensus 297 ------------n~~lg~g~---~p---------i~~l~~~Gv~v~lGTD~~~~~d--------~~~---------~m~~ 335 (455)
T TIGR02022 297 ------------EANLGDGI---FP---------AVDFVAAGGRFGIGSDSHVVID--------VAE---------ELRQ 335 (455)
T ss_pred ------------hccccCCC---CC---------HHHHHHCCCeEEEECCCCCCCC--------HHH---------HHHH
Confidence 33333322 22 8899999999999999643211 111 2222
Q ss_pred HHHHHHhhh---------cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCc
Q 009282 398 HLVWDTMVE---------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNV 468 (538)
Q Consensus 398 ~~~~~~~~~---------~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~ 468 (538)
...+.+... ...++.+++|+|+|.|+|+++|+ + .|+|++||+|||||+|.+.+...+.. ..++....+
T Consensus 336 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gAralg~-~-~GsLe~Gk~ADlvvld~~~~~~~~~~-~~~~~~~lv 412 (455)
T TIGR02022 336 LEYGQRLRDRARNVLAAGPGPSVGRALYDAALLGGAQALGL-A-TGGLRAGARADFLTLDGDHPYLAGAL-GDSLLDRWL 412 (455)
T ss_pred HHHHHHHHhcccccccCCcccchHHHHHHHHHHHHHHHhCC-C-CCccCCCCCcCEEEEeCCCcccCCCC-chhHHHHHh
Confidence 222222211 12467889999999999999999 3 89999999999999998755433210 011122234
Q ss_pred cCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 469 YEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 469 ~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
|.+. ..+|..|||+|++|+++|+++..+
T Consensus 413 ~~~~--~~~V~~v~V~G~~v~~~g~~~~~~ 440 (455)
T TIGR02022 413 FAGG--GAAVRDVWVGGRWVVRDGRHALRE 440 (455)
T ss_pred hcCC--CCCccEEEECCEEEEECCccccHH
Confidence 4433 458999999999999999998654
|
In some species, histidine utilization goes via urocanate to glutamate in four step, the last being removal of formamide. This model describes an alternate fourth step, formiminoglutamate hydrolase, which leads to N-formyl-L-glutamate. This product may be acted on by formylglutamate amidohydrolase (TIGR02017) and bypass glutamate as a product during its degradation. Alternatively, removal of formate (by EC 3.5.1.68) would yield glutamate. |
| >PRK13206 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=284.15 Aligned_cols=355 Identities=16% Similarity=0.182 Sum_probs=228.4
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC------------CCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~------------~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
..+++|+|++|++..+...++|.|+||||++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 70 ~~DlVI~Na~IiD~~gi~~adI~IkDGrIvaIG~~~~p~~~~gv~~~~~ig~~tevIDaeG~iV~PG~ID~HVH~~~P-- 147 (573)
T PRK13206 70 APDTVITGAVILDHWGIVKADVGIRDGRIVAIGKAGNPDIMDGVHPDLVIGPSTEIIAGNGRILTAGAIDCHVHFICP-- 147 (573)
T ss_pred CCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccccCCCCCEEEECCCCEEEeCEEeeeeccCCc--
Confidence 56899999999997777788999999999999974211 1357899999999999999999998665
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCCCC----C----CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHH
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN----G----SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
+ ..++++++||||+++++..+. . .....+....+......++++++...... ..+++.++
T Consensus 148 g---------~~~aALagGVTTvi~~G~gP~~~t~~~t~t~g~~~l~~~~~aa~~~pvn~g~~g~g~~~---~~~~L~el 215 (573)
T PRK13206 148 Q---------IVDEALAAGITTLIGGGTGPAEGSKATTVTPGAWHLARMLEALDGWPVNVALLGKGNTV---SAEALWEQ 215 (573)
T ss_pred h---------HHHHHHcCCeEEEEcCCCCccccCcccccccchhHHHHHHHHhhcCceeEEEecCcCcC---CHHHHHHH
Confidence 2 137899999999998643221 0 11112223333444567788887643222 24567777
Q ss_pred HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
. +.|+.++|++.++ ..+.+.+.+.++.|+++|.++.+|+++..+. |.
T Consensus 216 ~-~aGA~GfKi~~d~----g~t~~~i~~aL~~A~~~gv~V~iHadtlne~----------g~------------------ 262 (573)
T PRK13206 216 L-RGGAGGFKLHEDW----GSTPAAIDACLRVADAAGVQVALHSDTLNEA----------GF------------------ 262 (573)
T ss_pred H-HCCCcEEeecCcc----CCCHHHHHHHHHHHHHhCCEEEEECCCcccc----------ch------------------
Confidence 6 7899999987543 4689999999999999999999999876542 11
Q ss_pred HHHHHHHHHHcCCCEEEEeccCHHH---HHHHHHHHHcCC-cEEEecccccc---------------ccCcccccCCCcc
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMSMDA---MEEIAKARKAGQ-RVIGEPVVSGL---------------VLDDSWLWHSDFV 332 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~~~~---~~~i~~~~~~g~-~v~~~~~~~~~---------------~~~~~~~~~~~~~ 332 (538)
.+. .++...|..+|+.|...... .+.++.....++ +-+.+|+-.+. ++++..-++..|.
T Consensus 263 -~E~-t~aa~~gr~iH~~H~egaggghapd~~~~~~~~n~lp~stnpt~p~~~nt~~e~~~m~m~~h~l~~~~~~d~~fa 340 (573)
T PRK13206 263 -VED-TLAAIAGRSIHAYHTEGAGGGHAPDIITVASHPNVLPSSTNPTRPHTVNTLDEHLDMLMVCHHLNPAVPEDLAFA 340 (573)
T ss_pred -hhH-HHHHhcCCeEEEEeccCCCcCcccHHHHhcCCCCCcCCCCCCCCCCcccchhhhhCeEEeeccCCCCCcchhhhh
Confidence 011 23445678889999875332 133333332222 11112211110 1222211111111
Q ss_pred cccceeecCCCCCcccHHHH-HHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHh-----hh
Q 009282 333 TAAKYVMSPPIRASGHNKAL-QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM-----VE 406 (538)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~l-~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~-----~~ 406 (538)
. .|.+.+..+. ..+++.|+..+++||.+........ ..+.|.+ ......+.. ..
T Consensus 341 ~---------srir~~ti~ae~~l~d~G~~~~~~SDs~~~~~~~e~-----~~~~~q~------a~~~~~rr~~l~g~~~ 400 (573)
T PRK13206 341 E---------SRIRPSTIAAEDVLHDMGAISMIGSDSQAMGRIGEV-----VLRTWQT------AHVMKRRRGALPGDGR 400 (573)
T ss_pred h---------hhccceeeccCchHhhCCcEEeccCCccccccccch-----hhhHHHH------HHHHHhccCCCCCCCc
Confidence 1 1111111111 2478889999999998764332111 1111110 000000000 01
Q ss_pred cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCE
Q 009282 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGR 486 (538)
Q Consensus 407 ~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~ 486 (538)
...++..++|++.|+|||+++|+++.+|+|++||.|||||||.+.+ ..++..||++|+
T Consensus 401 ~~~~~v~~al~~yT~nPA~alG~~~~~GsLe~Gk~ADlVvld~d~f----------------------~~~~~~ti~~G~ 458 (573)
T PRK13206 401 ADNNRARRYVAKYTICPAVAHGIDHEIGSVEVGKLADLVLWEPAFF----------------------GVRPHAVLKGGA 458 (573)
T ss_pred ccchhHHHHHHHHHHHHHHHhCCCcCCcccCCCCcCCEEEECcccc----------------------CCCccEEEECCE
Confidence 3448999999999999999999988899999999999999997643 235789999999
Q ss_pred EEEEC-Ceeecc
Q 009282 487 VVWEN-DELNVV 497 (538)
Q Consensus 487 ~V~~~-~~~~~~ 497 (538)
++|.. |.....
T Consensus 459 iv~~~~gd~nas 470 (573)
T PRK13206 459 IAWAAMGDANAS 470 (573)
T ss_pred EEEecCCChhhc
Confidence 99987 666554
|
|
| >PRK07213 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=281.47 Aligned_cols=341 Identities=18% Similarity=0.251 Sum_probs=217.0
Q ss_pred EEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCC------------
Q 009282 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG------------ 120 (538)
Q Consensus 55 ~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~------------ 120 (538)
++|+|++|+++.. ..+++|+|+||+|++|++.. ++.++||++|++| |||||+|+|+......
T Consensus 2 ~li~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~---~~~~~id~~g~~v-PGlvd~H~H~~~~~~rg~~~~~~l~~~~ 77 (375)
T PRK07213 2 LVYLNGNFLYGEDFEPKKGNLVIEDGIIKGFTNEV---HEGNVIDAKGLVI-PPLINAHTHIGDSSIKDIGIGKSLDELV 77 (375)
T ss_pred EEEEeeEEEeCCCCceeeeEEEEECCEEEEeccCC---CCCeEEeCCCCEe-cceeeeccccCchhhhcCCCCCCHHHHc
Confidence 6899999999765 36789999999999999752 3468999999999 9999999999875210
Q ss_pred ------------CCChhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee-ecCChh
Q 009282 121 ------------SETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEV 183 (538)
Q Consensus 121 ------------~~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 183 (538)
..++++++ ..+..++++||||++|+.... ...++...+......+...+.... ....++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~G~Ttv~D~~~~~----~~~~~~~~~a~~~~~~r~~~~~~~~~~~~~~ 153 (375)
T PRK07213 78 KPPNGLKHKFLNSCSDKELVEGMKEGLYDMYNNGIKAFCDFREGG----IKGINLLKKASSDLPIKPIILGRPTEADENE 153 (375)
T ss_pred cCCCcchHHHHhcCCHHHHHHHHHHHHHHHHHcCCeEEEEhhhcC----hhHHHHHHHHHHcCCCceEEecCCCcccchh
Confidence 11223322 224456899999999974221 111222222211111111111000 111122
Q ss_pred hHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHHcCCCCccccccc
Q 009282 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALS 262 (538)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (538)
..+.++...+. ..++ ..++...++.+.++++++.|+++|+++++|+.+ ..+..... ..+|..
T Consensus 154 ~~~~~~~~~~~--~~g~----~~~~~~~~s~~~l~~~~~~A~~~g~~v~~H~~e~~~e~~~~~---~~~G~~-------- 216 (375)
T PRK07213 154 LKKEIREILKN--SDGI----GLSGANEYSDEELKFICKECKREKKIFSIHAAEHKGSVEYSL---EKYGMT-------- 216 (375)
T ss_pred hHHHHHHHHHh--cccc----cccccccCCHHHHHHHHHHHHHcCCEEEEeeCCchhHHHHHH---HHcCCC--------
Confidence 23333333311 1222 334445678999999999999999999999944 33322222 123321
Q ss_pred CCchHHHHHHHHHHHHHHHcCCC-EEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 263 RPPLLEGEATTRAIRLAEFVNTP-LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~-~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
.++.+.+ .|.. -.+.|+...++ +.++++++.|+.++.||.+ ++..+.++
T Consensus 217 --------~v~~~~~----~G~~~~~i~H~~~~~~-~~i~~la~~g~~v~~~P~s-------------n~~l~~g~---- 266 (375)
T PRK07213 217 --------EIERLIN----LGFKPDFIVHATHPSN-DDLELLKENNIPVVVCPRA-------------NASFNVGL---- 266 (375)
T ss_pred --------hHHHHHh----cCCCCCEEEECCCCCH-HHHHHHHHcCCcEEECCcc-------------hhhhccCC----
Confidence 1222332 2322 14799998887 8899999999999999886 22222221
Q ss_pred CCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhH
Q 009282 342 PIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~ 421 (538)
.++++++++|+++++|||..+.+.. .+...++.+....++++.++|+++|.
T Consensus 267 --------~~v~~l~~~Gv~v~lGTD~~~~~~~---------------------~~~~e~~~~~~~~~~~~~~~l~~aT~ 317 (375)
T PRK07213 267 --------PPLNEMLEKGILLGIGTDNFMANSP---------------------SIFREMEFIYKLYHIEPKEILKMATI 317 (375)
T ss_pred --------ccHHHHHHCCCEEEEeeCCCCCchH---------------------hHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 2388999999999999997543211 11111212223346999999999999
Q ss_pred hHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEE
Q 009282 422 ECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 487 (538)
Q Consensus 422 ~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~ 487 (538)
|+|+++|++ ++|+|++||.||||++|.+.+. + ..++.....|.+. ..+|..|||||+.
T Consensus 318 ~gA~~lg~~-~~G~l~~G~~ADlvv~d~~~~~--p---~~dp~~~lV~~~~--~~~v~~v~v~G~~ 375 (375)
T PRK07213 318 NGAKILGLI-NVGLIEEGFKADFTFIKPTNIK--F---SKNPYASIITRCE--SGDIVNKILKGKL 375 (375)
T ss_pred HHHHHhCCC-CcCCcCCCCcccEEEEcCcccc--c---cCCchHHHhhhcc--CCCceEEEECCcC
Confidence 999999995 5999999999999999975322 1 2344444555543 4689999999973
|
|
| >PRK13985 ureB urease subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=279.25 Aligned_cols=350 Identities=17% Similarity=0.214 Sum_probs=225.2
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC------------CCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~------------~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
..+++|+|++|++..+...++|.|+||||++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 64 ~~DlVI~Na~IiD~~gi~kaDI~IkdGrIaaIG~~gn~~~~~~v~~~~~ig~~tevIDa~G~iV~PG~ID~HvH~~~P-- 141 (568)
T PRK13985 64 ELDLIITNALIIDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP-- 141 (568)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEECCCCEEEeCEEEeeCCCCCc--
Confidence 56899999999997666788999999999999974211 2367999999999999999999998654
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCCCC-----C---CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHH
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN-----G---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
+ . ...++++||||+++++..+. . .....++...+......++++++.... .+..+++.++
T Consensus 142 ~-----~----~~~AlagGVTTvI~~G~gP~~~T~p~~~tpg~~~i~~ml~~a~~~pvn~gf~gkG~---~~~l~eL~el 209 (568)
T PRK13985 142 Q-----Q----IPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLGKGN---SSNDASLADQ 209 (568)
T ss_pred c-----H----HHHHhcCceEEEEccCcCCCCCCCCcCCCCcHHHHHHHHHHhhccCccEEEecCCc---cCCHHHHHHH
Confidence 2 1 24589999999998532211 0 122223444444444557777765332 2335677777
Q ss_pred HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
. +.|+.++|.+.++ ..+...+.+.++.|.+++.++.+|+.+..+.....
T Consensus 210 ~-~aGA~GfK~~ed~----g~t~~~I~~aL~vA~~~dv~V~iHtdtlne~g~~E-------------------------- 258 (568)
T PRK13985 210 I-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEAGCVE-------------------------- 258 (568)
T ss_pred H-HcCCEEEEECCcc----CCCHHHHHHHHHHHHHcCCEEEEeCCCCCCchhhH--------------------------
Confidence 6 7899999976443 46889999999999999999999997765421100
Q ss_pred HHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCC-cEEEecccccc------------------ccCcccccCCCcc
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ-RVIGEPVVSGL------------------VLDDSWLWHSDFV 332 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~-~v~~~~~~~~~------------------~~~~~~~~~~~~~ 332 (538)
. .++...|..+|..|......-..-+.++-.+. +|....+.... ++++..-++..|.
T Consensus 259 ---~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~nvlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~ed~afa 334 (568)
T PRK13985 259 ---D-TMAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILPASTNPTIPFTVNTEAEHMDMLMVCHHLDKSIKEDVQFA 334 (568)
T ss_pred ---H-HHHHhcCCeEEEEeccCCCccchhhHHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhh
Confidence 0 22344677889999876332122222332222 12222111111 1222221111111
Q ss_pred cccceeecCCCCCcccHHHHH-HHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh-cC--
Q 009282 333 TAAKYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SG-- 408 (538)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~l~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~-~~-- 408 (538)
. .|.+.+..+.. -+++.|+...++||+.....-.. ... ++-....++.. .|
T Consensus 335 ~---------srir~~tiaaed~l~d~G~~s~~~SDs~~mgr~ge-----~~~-----------r~~q~a~k~~~~~g~l 389 (568)
T PRK13985 335 D---------SRIRPQTIAAEDTLHDMGIFSITSSDSQAMGRVGE-----VIT-----------RTWQTADKNKKEFGRL 389 (568)
T ss_pred h---------hhccccccccCchhhhCCcEEEEeccchhhCcccc-----eee-----------ehHHHHHHHHHhcCCC
Confidence 1 11112222222 36677999999999764433211 111 11111112222 23
Q ss_pred --------CCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEE
Q 009282 409 --------QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEV 480 (538)
Q Consensus 409 --------~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 480 (538)
.++.++||+++|.|||+++|+++++|+|++||.|||||||.+++ ..++..
T Consensus 390 ~~~~~~~dnl~v~eAL~~yTin~A~A~G~e~~vGSLe~GK~ADlVv~d~d~f----------------------~~~pe~ 447 (568)
T PRK13985 390 KEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF----------------------GVKPNM 447 (568)
T ss_pred CCccccccccCHHHHHHHHhHHHHHHcCcccCceeECCCCccCEEEEcCccC----------------------CCChhe
Confidence 35666999999999999999999999999999999999998765 235789
Q ss_pred EEECCEEEEEC-Ceeecc
Q 009282 481 TIAGGRVVWEN-DELNVV 497 (538)
Q Consensus 481 V~v~G~~V~~~-~~~~~~ 497 (538)
||++|+++|.. |.-...
T Consensus 448 vi~~G~iv~~~~gd~n~s 465 (568)
T PRK13985 448 IIKGGFIALSQMGDANAS 465 (568)
T ss_pred EEECCEEEEccCCCCCCC
Confidence 99999999997 554443
|
|
| >PRK09229 N-formimino-L-glutamate deiminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=290.19 Aligned_cols=369 Identities=14% Similarity=0.089 Sum_probs=229.9
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeC-CEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-C----------
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVED-GIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------- 120 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~-grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~---------- 120 (538)
..++++++.+.++ ...+++|+|+| |||++||+... ++ .++..|++|+|||||+|+|+++... |
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~v~i~~~grI~~vg~~~~-~~---~~~~~g~~vlPGlVn~H~H~~~~~~rg~~~~~~~~~~ 77 (456)
T PRK09229 3 TTLFAERALLPDG-WARNVRLTVDADGRIAAVEPGAA-PA---GAERLAGPVLPGMPNLHSHAFQRAMAGLTEVRGPPQD 77 (456)
T ss_pred hhHHHHHhhCCCc-cccCcEEEEecCCeEEEecCCCC-Cc---cccccCcEEccCcccccccHhhHhhcCcccccCCCCC
Confidence 3455666666333 23678999999 99999998543 22 2456899999999999999874411 0
Q ss_pred --------------CCChhhHHH----HHHHHHhCCcEEEecccCCCC-----------CCHHHHHHHHHHHhcccceee
Q 009282 121 --------------SETIDDFFS----GQAAALAGGTTMHIDFVIPIN-----------GSLTAGFEAYEKKAKNSCMDY 171 (538)
Q Consensus 121 --------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 171 (538)
..++++++. .+..++++||||+.|+..... ......+++..+.+.+..+..
T Consensus 78 ~l~~w~~~~~~~~~~~~~e~~~~~a~~~~~e~L~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~e~GiR~~~~~ 157 (456)
T PRK09229 78 SFWSWRELMYRFALRLTPDQLEAIARQLYVEMLEAGYTSVGEFHYLHHDPDGTPYADPAEMALRIVAAARAAGIGLTLLP 157 (456)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCcEEEeeeeeccCCCCCccCChHHHHHHHHHHHHHcCCEEEece
Confidence 012222211 234458899999998742210 012444555555555533322
Q ss_pred eeee--ee---ec---------CChhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC
Q 009282 172 GFHM--AI---TK---------WDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (538)
Q Consensus 172 ~~~~--~~---~~---------~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 236 (538)
..+. .. .. ..++..+..+.+.+. .+...+.+.+.+++...++.+.++++++.| ++|+++++|+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~A-~~g~~i~~H~~ 236 (456)
T PRK09229 158 VLYAHSGFGGQPPNPGQRRFINDPDGFLRLLEALRRALAALPGARLGLAPHSLRAVTPDQLAAVLALA-APDGPVHIHIA 236 (456)
T ss_pred eeeecCCCCCCCCchhhcccccCHHHHHHHHHHHHHhhcCCCceEEEEeCCCCCCCCHHHHHHHHHHh-cCCCceEEEeC
Confidence 1111 00 00 001122223333321 223456666777777788999999999999 99999999994
Q ss_pred -ChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecc
Q 009282 237 -NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPV 315 (538)
Q Consensus 237 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~ 315 (538)
+..+.....+ ..|... ++ .+.....++.++.+.||...++ ++++++++.|+.+++||.
T Consensus 237 e~~~e~~~~~~---~~g~~~----------------~~-~l~~~g~l~~~~~l~H~~~l~~-~d~~~la~~g~~v~~~P~ 295 (456)
T PRK09229 237 EQTKEVDDCLA---WSGARP----------------VE-WLLDHAPVDARWCLVHATHLTD-AETARLARSGAVAGLCPT 295 (456)
T ss_pred CCHHHHHHHHH---HcCCCH----------------HH-HHHHcCCCCCCeEEEeeccCCH-HHHHHHHHcCCeEEECch
Confidence 3433333322 233221 11 1122335577889999999887 889999999999999887
Q ss_pred ccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhh
Q 009282 316 VSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~ 395 (538)
+ ++..+.+. .+++.++++|+++++|||...... +|. ++
T Consensus 296 s-------------n~~lg~g~------------~p~~~l~~~Gv~v~lGtD~~~~~d--------~~~---------~~ 333 (456)
T PRK09229 296 T-------------EANLGDGI------------FPAVDYLAAGGRFGIGSDSHVSID--------LVE---------EL 333 (456)
T ss_pred h-------------hhhhcCCC------------CCHHHHHHCCCeEEEecCCCCCCC--------HHH---------HH
Confidence 5 22222222 227899999999999999643211 111 12
Q ss_pred hHHHHHHHhhh---------cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCC
Q 009282 396 RMHLVWDTMVE---------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466 (538)
Q Consensus 396 ~~~~~~~~~~~---------~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~ 466 (538)
......++... ...++..++|+++|.|+|+++|+ .+|+|++||+|||||+|.+.+...+. ...++...
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aT~~gA~alg~--~~GsLe~Gk~ADlvvld~~~~~~~~~-~~~~~~~~ 410 (456)
T PRK09229 334 RLLEYGQRLRDRRRNVLAAAAQPSVGRRLFDAALAGGAQALGR--AIGGLAVGARADLVVLDLDHPALAGR-EGDALLDR 410 (456)
T ss_pred HHHHHHHHHhhcCCcccccccccchHHHHHHHHHHHHHHHhCC--CcCCcCCCCccCEEEEeCCCccccCC-ChhhHHHH
Confidence 22222212110 13468999999999999999999 58999999999999999887533221 00111122
Q ss_pred CccCCeEEeeEEEEEEECCEEEEECCeee
Q 009282 467 NVYEGRRVKGKVEVTIAGGRVVWENDELN 495 (538)
Q Consensus 467 ~~~~~~~~~~~v~~V~v~G~~V~~~~~~~ 495 (538)
..|.+. ..+|..|||+|++||++|+++
T Consensus 411 lv~~~~--~~~V~~v~V~G~~v~~~g~~~ 437 (456)
T PRK09229 411 WVFAGG--DAAVRDVWVAGRWVVRDGRHR 437 (456)
T ss_pred HhhcCC--CCCeeEEEECCEEEEECCccC
Confidence 233322 458999999999999999854
|
|
| >PRK13308 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=278.97 Aligned_cols=348 Identities=18% Similarity=0.175 Sum_probs=226.8
Q ss_pred cccEEEECcEEEcCC-CceeeeEEEeCCEEEEecCCCCC------------CCCceEEecCCCeeecccccccccccccc
Q 009282 52 SSKILIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~-~~~~~~V~I~~grI~~Vg~~~~~------------~~~~~vID~~G~~v~PGlID~H~H~~~~~ 118 (538)
..+++|+|++|+|+. +...++|.|+||||++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 67 ~~DlVItNa~IIDp~~Gi~kaDIgIkDGrIaaIG~~~npd~~~gv~p~~~~g~~teVIDaeG~IVtPG~ID~HVH~~~P- 145 (569)
T PRK13308 67 ALDFVLCNVTVIDPVLGIVKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEGLIATPGAIDVHVHFDSA- 145 (569)
T ss_pred cCCEEEECeEEEcCCCCeEEeEEEEECCEEEEecCCCCccccccccccccCCCCCeEEECCCCEEEeCEEEeeeCCCCc-
Confidence 568999999999864 45688999999999999874311 2357899999999999999999999764
Q ss_pred CCCCChhhHHHHHHHHHhCCcEEEecccCCC----CCCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHHHH
Q 009282 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI----NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKE 194 (538)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (538)
++ .++++++||||+++++..+ .......++...+......++++++..... ....++.++. +
T Consensus 146 -g~---------~~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~aa~~~pvN~g~~gkG~~---s~~aeL~eli-~ 211 (569)
T PRK13308 146 -QL---------VDHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQAAEAWPVNFGFLGRGNS---SKPAALIEQV-E 211 (569)
T ss_pred -cH---------HHHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHHHhcCCccEEEEcCCcc---cCHHHHHHHH-H
Confidence 21 3788999999999863222 113444455555555455688887754322 3356777777 7
Q ss_pred cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHH
Q 009282 195 KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274 (538)
Q Consensus 195 ~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~ 274 (538)
.|+.++|++.++ ..+.+.+.+.++.|+++++++.+|+....+.. ++ +.
T Consensus 212 aGA~GfKi~ed~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g-~~------------------------E~--- 259 (569)
T PRK13308 212 AGACGLKIHEDW----GAMPAAIDTCLEVADEYDFQVQLHTDTLNESG-FV------------------------ED--- 259 (569)
T ss_pred CCCCEEeecCCC----CCCHHHHHHHHHHHHhcCCEEEEeCCCcCcch-HH------------------------HH---
Confidence 899999987554 34789999999999999999999997754321 11 11
Q ss_pred HHHHHHHcCCCEEEEeccCHH---HHHHHHHHHHcCC-cEEEecccccc---------------ccCcccccCCCccccc
Q 009282 275 AIRLAEFVNTPLYVVHVMSMD---AMEEIAKARKAGQ-RVIGEPVVSGL---------------VLDDSWLWHSDFVTAA 335 (538)
Q Consensus 275 ~l~~~~~~~~~~~~~h~~~~~---~~~~i~~~~~~g~-~v~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 335 (538)
.++...|..+|+.|..... ..+.++.....++ +-+.+|+-.+. ++++..-++..|..
T Consensus 260 --t~~a~~gr~iH~~H~egaggghapd~l~~~~~~n~lp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~afa~-- 335 (569)
T PRK13308 260 --TLAAIGGRTIHMYHTEGAGGGHAPDIIRVVGEPHCLPSSTNPTNPYTVNTFDEHLDMTMVCHHLNPDVPEDVAFAE-- 335 (569)
T ss_pred --HHHHhcCCeEEEEeccCCccCchhHHHHHhCCCCccCCCCCCCCCCccCchhhhcCeEEEecCCCCCCcchhhhhh--
Confidence 1233447788999987632 2133433333332 11122221110 12222222112211
Q ss_pred ceeecCCCCCcccHHHHH-HHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHH-HHHHhh-hcCCCCH
Q 009282 336 KYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL-VWDTMV-ESGQISV 412 (538)
Q Consensus 336 ~~~~~p~~r~~~~~~~l~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~-~~~~~~-~~~~ls~ 412 (538)
.|.+.+..+.. -+++.|+...++||+........ .....+ ...+.. ..|.|+.
T Consensus 336 -------srir~~ti~ae~~l~d~g~~s~~~sds~~mgr~~e-----------------~i~r~~q~a~~~~~~~g~l~~ 391 (569)
T PRK13308 336 -------SRIRAQTIAAEDVLHDIGAISMLGSDSQGMGRIAE-----------------VIARTWQLASKMKDQRGPLPE 391 (569)
T ss_pred -------hhccceeeccCchhhcCCcEEEEecchHHHhHHHH-----------------HHHHHHHHHHHHhhcCCCCCc
Confidence 11111222222 36677999999999764433211 111111 112222 3566877
Q ss_pred HH-----------HHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEE
Q 009282 413 TD-----------YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 481 (538)
Q Consensus 413 ~e-----------al~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V 481 (538)
++ .|+++|.|||+++|+++.+|+|++||.||||+|+++.+ ..++..|
T Consensus 392 ~~~~~~dn~rv~r~L~~~T~npA~alGi~~~vGsLe~Gk~ADLVv~d~d~f----------------------gv~p~~t 449 (569)
T PRK13308 392 DRGTFADNARIKRYIAKYTINPAITFGIDDHIGSLEPGKLADIVLWRPAFF----------------------GIKPELV 449 (569)
T ss_pred ccccCCchhhhhHHHHHHhHHHHHHcCCCCCceeeCCCCcCCEEEECCccc----------------------CCCeeEE
Confidence 76 79999999999999988899999999999999997643 2357899
Q ss_pred EECCEEEEEC-Ceeec
Q 009282 482 IAGGRVVWEN-DELNV 496 (538)
Q Consensus 482 ~v~G~~V~~~-~~~~~ 496 (538)
|++|+++|.. |.-..
T Consensus 450 i~~G~iv~~~~gd~n~ 465 (569)
T PRK13308 450 IKGGFPAWAAMGDANG 465 (569)
T ss_pred EECCEEEEecCCCCCc
Confidence 9999999875 44443
|
|
| >cd00375 Urease_alpha Urease alpha-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=277.65 Aligned_cols=349 Identities=18% Similarity=0.192 Sum_probs=229.3
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCC------------CCCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN------------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~------------~~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
..+++|+|++|++..+...++|.|+||||++|++... ...++++||++|++|+|||||+|+|+..+
T Consensus 64 ~~DlVI~Na~IiD~~gi~~adI~IkdGrIvaIG~agnp~~~~~v~~~~~~g~~teVIDaeG~iV~PG~ID~HvH~~~P-- 141 (567)
T cd00375 64 VLDLVITNALIIDYTGIYKADIGIKDGRIVAIGKAGNPDIMDGVTPNMIVGPSTEVIAGEGKIVTAGGIDTHVHFICP-- 141 (567)
T ss_pred cCCEEEECeEEECCCCcEEEEEEEECCEEEEEecCCCccccccccccccCCCCCeEEECCCCEEeeceEECccCCCCc--
Confidence 5689999999999776678999999999999987531 11357899999999999999999998654
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCCC-----C---CCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHH
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----N---GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
++ ..+++++||||+++++..+ . ......++...+......++++++... +.+...++.++
T Consensus 142 ~~---------~~aAlagGVTTvI~~G~gP~~gtnatp~t~g~~~l~~ml~aa~~~pin~g~~gkg---~~~~l~eL~e~ 209 (567)
T cd00375 142 QQ---------IEEALASGITTMIGGGTGPAAGTKATTCTPGPWNIKRMLQAADGLPVNIGFLGKG---NGSSPDALAEQ 209 (567)
T ss_pred cH---------HHHHHcCCCcEEEcCCcCcccccCCCCCCCCHHHHHHHHHHhhcCCceEEEEecC---ccccHHHHHHH
Confidence 21 4788999999999963222 1 123455555555555566788777532 23446677777
Q ss_pred HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
. +.|+.++|++.++ ..+...+.+.++.|.+++.++.+|+.+..+....
T Consensus 210 ~-~aGA~GfK~~eD~----g~t~~~i~~aL~~A~~~dv~VaiHadtlne~g~~--------------------------- 257 (567)
T cd00375 210 I-EAGACGLKLHEDW----GATPAAIDTCLSVADEYDVQVAIHTDTLNESGFV--------------------------- 257 (567)
T ss_pred H-HcCCEEEEecCCC----CCCHHHHHHHHHHHHhhCCEEEEECCCCCcchHH---------------------------
Confidence 6 7899999987554 3489999999999999999999999775432111
Q ss_pred HHHHHHHHHHcCCCEEEEeccCHHH---HHHHHHHHHcCCcEEEecccccc------------------ccCcccccCCC
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMSMDA---MEEIAKARKAGQRVIGEPVVSGL------------------VLDDSWLWHSD 330 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~~~~---~~~i~~~~~~g~~v~~~~~~~~~------------------~~~~~~~~~~~ 330 (538)
+. .++...|..+|..|...... .+.++.....+ |.++.+.... ++++..-++..
T Consensus 258 --E~-t~aa~~gr~iH~~H~egaggghapdi~~~~~~~n--vlp~stnpt~p~t~nt~~e~~dm~m~~h~l~~~~~~d~~ 332 (567)
T cd00375 258 --ED-TIAAIKGRTIHTYHTEGAGGGHAPDIIKVAGHPN--VLPSSTNPTRPFTVNTLDEHLDMLMVCHHLDPNIPEDVA 332 (567)
T ss_pred --HH-HHHHhcCCeEEEEecCCCCcccchHHHHhcCCCC--cccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhh
Confidence 01 23456678889999876332 13333222222 2222211111 12222221111
Q ss_pred cccccceeecCCCCCcccHHHHH-HHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh-cC
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SG 408 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~-~~ 408 (538)
|.. .|.+.+..+.. -+++.|+...++||+.....-.. ... ++-....++.. .|
T Consensus 333 fa~---------srir~~ti~ae~~l~d~G~~s~~~sDs~~mgr~ge-----~~~-----------r~~q~a~k~~~~~g 387 (567)
T cd00375 333 FAE---------SRIRAETIAAEDVLHDLGAISIMSSDSQAMGRVGE-----VIL-----------RTWQTAHKMKAQRG 387 (567)
T ss_pred hhh---------hhccchhhccchhhhccCcEEEEccchhhcCccce-----eee-----------chHHHHHHHHHhcC
Confidence 211 12222222233 35667999999999764433211 111 11111223333 22
Q ss_pred -------CCCHHHH---HHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEE
Q 009282 409 -------QISVTDY---VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKV 478 (538)
Q Consensus 409 -------~ls~~ea---l~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 478 (538)
+.+...+ |+++|+|||+++|+++.+|+|++||.||||||+.+.+ ..++
T Consensus 388 ~~~~~~~~~~n~r~~~~L~~~Tin~A~alG~~~~vGSLe~GK~ADlVv~d~~~f----------------------~~~p 445 (567)
T cd00375 388 PLPEDSGDADNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWEPAFF----------------------GVKP 445 (567)
T ss_pred CCCcccccCchHHHHHHHHHhhHHHHHHcCcccCceeeCCCCccCEEEEcCccc----------------------CCCe
Confidence 2344444 9999999999999999999999999999999997744 2357
Q ss_pred EEEEECCEEEEEC-CeeeccC
Q 009282 479 EVTIAGGRVVWEN-DELNVVP 498 (538)
Q Consensus 479 ~~V~v~G~~V~~~-~~~~~~~ 498 (538)
..||++|++||.. |++....
T Consensus 446 ~~vi~~G~iv~~~~gd~nasi 466 (567)
T cd00375 446 EMVLKGGFIAYAQMGDPNASI 466 (567)
T ss_pred eEEEECCEEEEecCCCccccC
Confidence 8999999999998 7776653
|
Nickel-dependent ureases are found in bacteria, fungi and plants. Their primary role is to allow the use of external and internally generated urea as a nitrogen source. The enzyme consists of 3 subunits, alpha, beta and gamma, which can be fused and present on a single protein chain and which in turn forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers. |
| >PRK13309 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=280.62 Aligned_cols=356 Identities=17% Similarity=0.176 Sum_probs=226.0
Q ss_pred cccEEEECcEEEcC-CCceeeeEEEeCCEEEEecCCCCC------------CCCceEEecCCCeeecccccccccccccc
Q 009282 52 SSKILIKGGTVVNA-HHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (538)
Q Consensus 52 ~~~~~i~n~~vv~~-~~~~~~~V~I~~grI~~Vg~~~~~------------~~~~~vID~~G~~v~PGlID~H~H~~~~~ 118 (538)
..+++|+|++|+|+ .+...++|.|+||||++||+.... ..++++||++|++|+|||||+|+|+..+
T Consensus 67 ~~DlVI~Ng~ViD~~~gi~kaDI~IkdGrI~aIG~~~~p~~~~~v~~~~~~g~~tevIDa~G~iVtPG~ID~HvH~~~P- 145 (572)
T PRK13309 67 VLDLVITNVTIVDARLGVIKADVGIRDGKIVGIGKSGNPSTMDGVTQGMVVGVSTDAISGEHLILTAAGIDTHIHLISP- 145 (572)
T ss_pred cCCEEEECeEEEcCCCCEEEEEEEEECCEEEEecCCCccccccccccccccCCCceEEECCCCEEEeCEEEeecccCCc-
Confidence 45799999999996 355789999999999999874321 1247899999999999999999998765
Q ss_pred CCCCChhhHHHHHHHHHhCCcEEEecccCCC-----C---CCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHH
Q 009282 119 MGSETIDDFFSGQAAALAGGTTMHIDFVIPI-----N---GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEV 190 (538)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (538)
++ .++++++||||+++++..+ . ......++...+......++++++.... .....++.+
T Consensus 146 -~~---------~~aAl~gGVTTvi~~G~gp~~~~n~~~~t~g~~~i~~~l~~a~~~pvn~g~~gkg~---~~~~~~l~e 212 (572)
T PRK13309 146 -QQ---------AYHALSNGVTTFFGGGIGPTDGTNGTTVTPGPWNIRQMLRSIEGLPVNVGILGKGN---SYGRGPLLE 212 (572)
T ss_pred -ch---------HHHHHcCceEEEEecCCCCccCCCCCCCCCCHHHHHHHHHHhccCCcCEEEEcCCC---CCCHHHHHH
Confidence 21 3579999999999643211 1 1334455555555555567777765322 122356666
Q ss_pred HHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHH
Q 009282 191 MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270 (538)
Q Consensus 191 ~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 270 (538)
+. +.|+.++|++.++ ..+.+.+.+.++.|++++.++.+|+.+..+.....
T Consensus 213 l~-~aGa~gfk~~~d~----g~t~~~L~~aLe~A~~~gv~VaiH~d~lnE~g~vE------------------------- 262 (572)
T PRK13309 213 QA-IAGVAGYKVHEDW----GATAAALRHALRVADEVDIQVAVHTDSLNECGYVE------------------------- 262 (572)
T ss_pred HH-hcCcEEEEecCcC----CcCHHHHHHHHHHHHhcCCEEEEeCCccccchhHH-------------------------
Confidence 66 7899999987554 24889999999999999999999987654321111
Q ss_pred HHHHHHHHHHHcCCCEEEEeccCHH---HHHHHHHHHHcCC-cEEEeccccc---------------cccCcccccCCCc
Q 009282 271 ATTRAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARKAGQ-RVIGEPVVSG---------------LVLDDSWLWHSDF 331 (538)
Q Consensus 271 ~i~~~l~~~~~~~~~~~~~h~~~~~---~~~~i~~~~~~g~-~v~~~~~~~~---------------~~~~~~~~~~~~~ 331 (538)
.. ++...+.++|..|..... ..+.++.....++ +-+.+|+..+ .++++..-++..|
T Consensus 263 ----~~-~aa~~grpih~~H~~Gaggghapd~~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~D~~~ 337 (572)
T PRK13309 263 ----DT-IDAFEGRTIHTFHTEGAGGGHAPDIIKVASQTNVLPSSTNPTLPYGVNSQAELFDMIMVCHNLNPNVPADVAF 337 (572)
T ss_pred ----HH-HHHhCCCceeeeeccCcccCCchhHHHhcCCCCcccCCCCCCCCCcccchHhhhchhhhhccCCCCCCCChhH
Confidence 11 234445666777765422 1122222222221 1111111111 0122222221111
Q ss_pred ccccceeecCCCCCc-ccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHH--H----h
Q 009282 332 VTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWD--T----M 404 (538)
Q Consensus 332 ~~~~~~~~~p~~r~~-~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~--~----~ 404 (538)
.. .|.. +...+...++++|+.++++||++...... .+++.. ++........ . .
T Consensus 338 a~---------srig~e~~~a~~~l~daGa~~~~gSD~pv~gr~~----~~p~~~-------iq~Av~rk~~~g~l~~~~ 397 (572)
T PRK13309 338 AE---------SRVRPETIAAENVLHDMGVISMFSSDSQAMGRVG----ENWLRA-------IQTADAMKAARGKLPEDA 397 (572)
T ss_pred HH---------HhhCchhhcchhHHHhCCCEEEEcCCCCcccCCc----ccHHHH-------HHHHHHHHhccCCCCccC
Confidence 11 0111 22355678999999999999976431100 011110 0000000000 0 0
Q ss_pred hhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEEC
Q 009282 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAG 484 (538)
Q Consensus 405 ~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~ 484 (538)
.....++..+||++.|.|||+++|+++.+|+|++||.|||||||++.+ ..++..||++
T Consensus 398 ~~~~~~~v~~aL~~yT~n~A~a~g~e~~~GsLe~Gk~ADlvvld~d~f----------------------~~~~~~vi~~ 455 (572)
T PRK13309 398 AGNDNFRVLRYVAKITINPAITQGVSHVIGSVEVGKMADLVLWEPRFF----------------------GAKPKMVIKG 455 (572)
T ss_pred CCcccccHHHHHHHHhHHHHHHcCcccCccccCCCCcCCEEEEchhhc----------------------CCCccEEEEC
Confidence 012347888999999999999999999999999999999999997754 2357899999
Q ss_pred CEEEEEC-CeeeccC
Q 009282 485 GRVVWEN-DELNVVP 498 (538)
Q Consensus 485 G~~V~~~-~~~~~~~ 498 (538)
|++||.. |++....
T Consensus 456 G~iv~~~~gd~~as~ 470 (572)
T PRK13309 456 GMINWAAMGDPNASL 470 (572)
T ss_pred CEEEEecCCCccccC
Confidence 9999998 8877654
|
|
| >PRK08418 chlorohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=285.22 Aligned_cols=368 Identities=15% Similarity=0.082 Sum_probs=224.1
Q ss_pred EEEECcEEEcCCC---c-eeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCeeeccccccccccccccC-CC-----
Q 009282 55 ILIKGGTVVNAHH---Q-QIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS----- 121 (538)
Q Consensus 55 ~~i~n~~vv~~~~---~-~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~----- 121 (538)
.+|+|++|++++. . ++++|+|+ |+|++||+.... .++.++||+.|++|+|||||+|+|+..... +.
T Consensus 2 ~~i~~~~v~t~~~~~~~~~~~~v~v~-~~I~~ig~~~~~~~~~~~~~vid~~g~~v~PG~Vn~H~H~~~~~~rg~~~~~~ 80 (408)
T PRK08418 2 KIIGASYIFTCDENFEILEDGAVVFD-DKILEIGDYENLKKKYPNAKIQFFKNSVLLPAFINPHTHLEFSANKTTLDYGD 80 (408)
T ss_pred EEEEccEEEecCCCCceeeccEEEEC-CEEEEecCHHHHHhhCCCCcEEecCCcEEccCccccccchhhhhhccccCCCc
Confidence 5799999998773 2 68899999 999999974321 224568999999999999999999975421 10
Q ss_pred --------------CChhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecCChh
Q 009282 122 --------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEV 183 (538)
Q Consensus 122 --------------~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (538)
.+++..+ .....++++||||+.|+.... ...++..+.+.+..+.............+
T Consensus 81 ~~~wl~~~~~~~~~l~~~~~~~~~~~~~~E~l~~GtTtv~d~~~~~-----~~~~a~~~~GiR~~~~~~~~~~~~~~~~~ 155 (408)
T PRK08418 81 FIPWLGSVINHREDLLEKCKGALIQQAINEMLKSGVGTIGAISSFG-----IDLEICAKSPLRVVFFNEILGSNASAVDE 155 (408)
T ss_pred hHHHHHHHhhhhhhcCHHHHHHHHHHHHHHHHhcCceEEEEeecch-----hhHHHHHhcCCeEEEEeeeeCCCccchhh
Confidence 0111111 123456899999999875321 12344555555543321111100000011
Q ss_pred hHHHHHHHHHH---cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHHHHHHcCCC-Cccc
Q 009282 184 VSDEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGIT-GPEG 258 (538)
Q Consensus 184 ~~~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~~~~~~~~~~g~~-~~~~ 258 (538)
....+...... ...+.++..+.+++.+.++++.++++.+.|+++|+++++|+. +..+.....+ ..|.. ....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~aph~~~t~s~e~l~~~~~~A~~~~~~i~~H~~E~~~E~~~~~~---~~G~~~~~~~ 232 (408)
T PRK08418 156 LYQDFLARFEESKKFKSKKFIPAIAIHSPYSVHPILAKKALQLAKKENLLVSTHFLESKAEREWLEE---SKGWFKKFFE 232 (408)
T ss_pred hHHHHHHHHHhhhcccCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCHHHHHHHHh---ccCchhhhhh
Confidence 11111111111 123457777788888899999999999999999999999995 4444333322 12210 0000
Q ss_pred cccc-CCchHHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccc
Q 009282 259 HALS-RPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (538)
Q Consensus 259 ~~~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
.... .++ ....++..... +.++.+.|+.+.++ ++++++++.|..|++||.+ ++..+.+
T Consensus 233 ~~~~~~~~------~~~pv~~l~~~g~~~~~~~H~~~~~~-~di~~la~~g~~v~~cP~s-------------n~~lg~g 292 (408)
T PRK08418 233 KFLKEPKP------LYTPKEFLELFKGLRTLFTHCVYASE-EELEKIKSKNASITHCPFS-------------NRLLSNK 292 (408)
T ss_pred hhcccccc------cCCHHHHHHHhCCCCeEEEecccCCH-HHHHHHHHcCCcEEECHhH-------------HHHhcCC
Confidence 0000 000 00111112222 46889999999887 8999999999999999876 3333333
Q ss_pred eeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHH
Q 009282 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (538)
Q Consensus 337 ~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal 416 (538)
. .++.+++++|+++++|||+...+....+ +. ++.......+... ...+++++|
T Consensus 293 ~------------~p~~~~~~~Gi~v~lGtD~~~~~~~~~~-----~~---------em~~~~~~~~~~~-~~~~~~~~l 345 (408)
T PRK08418 293 A------------LDLEKAKKAGINYSIATDGLSSNISLSL-----LD---------ELRAALLTHANMP-LLELAKILL 345 (408)
T ss_pred C------------ccHHHHHhCCCeEEEeCCCCCCCCCcCH-----HH---------HHHHHHHHhccCC-ccccHHHHH
Confidence 2 2288999999999999997544332211 11 2222111111111 113468999
Q ss_pred HHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEE
Q 009282 417 RLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 488 (538)
Q Consensus 417 ~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V 488 (538)
+++|.|+|+++|++ .|+|++||.||||++|.+.+.. +. .+.|+........|..|||+|++|
T Consensus 346 ~~aT~~gA~alg~~--~G~l~~G~~ADlv~~d~~~~~~-~~-------~~~~~~~~~~~~~v~~v~v~G~~v 407 (408)
T PRK08418 346 LSATRYGAKALGLN--NGEIKEGKDADLSVFELPEECT-KK-------EQLPLQFILHAKEVKKLFIGGKEV 407 (408)
T ss_pred HHHHHHHHHHhCCC--CccccCCCccCEEEEeCCCCCC-Ch-------hHhHHHHHhccCccceEEECCEEc
Confidence 99999999999994 6999999999999999763211 10 011222111135899999999987
|
|
| >PRK13207 ureC urease subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=278.62 Aligned_cols=352 Identities=18% Similarity=0.202 Sum_probs=225.7
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCC----------CCCCceEEecCCCeeeccccccccccccccCCC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~----------~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~ 121 (538)
+++++|+|++|++..+...++|+|+||||++|++... .+.+.++||++|++|+|||||+|+|+..+ +.
T Consensus 66 ~mDlVI~Na~Vvd~~gi~~adI~I~dGrI~~IG~~~~p~~~~~v~~~~~~~~eVIDa~G~iV~PG~ID~HvH~~~P--~~ 143 (568)
T PRK13207 66 AVDTVITNALILDHWGIVKADIGIKDGRIVAIGKAGNPDIQDGVDIIIGPGTEVIAGEGLIVTAGGIDTHIHFICP--QQ 143 (568)
T ss_pred cCCEEEECeEEECCCCeEEEEEEEECCEEEEEeCCCCccccccccccCCCCCeEEECCCCEEEeCeEECccCCccc--cH
Confidence 5689999999999866678999999999999987421 11367899999999999999999998655 21
Q ss_pred CChhhHHHHHHHHHhCCcEEEecccCCCCC--------CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHHH
Q 009282 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (538)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (538)
.++++++||||+++++..+.. .....+....+......++++++... ..+..+++.++.
T Consensus 144 ---------~~aALagGVTTVi~mg~gP~~gt~~~t~tpG~~~l~~~l~~a~~~pin~g~~g~g---~~~~~~~L~e~i- 210 (568)
T PRK13207 144 ---------IEEALASGVTTMIGGGTGPATGTNATTCTPGPWHIHRMLQAADAFPMNIGFLGKG---NASLPEALEEQI- 210 (568)
T ss_pred ---------HHHHHcCCCCEEEcCCcCCccCCcccccccchHHHHHHHHHhhcCCceEEEEcCC---CcccHHHHHHHH-
Confidence 477899999999998432211 11223333333333455667666532 234466777777
Q ss_pred HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHH
Q 009282 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (538)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~ 273 (538)
+.|+.++|++.++ ..+.+.+.++++.|+++|.++.+|+.+..+.. +.+.
T Consensus 211 ~aGA~gfKi~~d~----g~t~~~l~~aL~~A~~~gv~V~iHa~tlne~G-~~e~-------------------------- 259 (568)
T PRK13207 211 EAGAIGLKLHEDW----GATPAAIDNCLSVADEYDVQVAIHTDTLNESG-FVED-------------------------- 259 (568)
T ss_pred HcCCCEEeecCCC----CCCHHHHHHHHHHHHHhCCEEEEeCCCcccch-HHHH--------------------------
Confidence 7899999988654 24889999999999999999999997654321 1111
Q ss_pred HHHHHHHHcCCCEEEEeccC---HHHHHHHHHHHHcCCc-EEEecccccc---------------ccCcccccCCCcccc
Q 009282 274 RAIRLAEFVNTPLYVVHVMS---MDAMEEIAKARKAGQR-VIGEPVVSGL---------------VLDDSWLWHSDFVTA 334 (538)
Q Consensus 274 ~~l~~~~~~~~~~~~~h~~~---~~~~~~i~~~~~~g~~-v~~~~~~~~~---------------~~~~~~~~~~~~~~~ 334 (538)
.++...+..+|..|... ....+.++.+...++. -+.+|+..+. +++++.-++..|..
T Consensus 260 ---t~~a~~g~~iH~~H~egaggghapdii~~~~~~~v~p~st~pt~p~~~~~~~e~~~m~m~~h~l~~~~~~d~~~a~- 335 (568)
T PRK13207 260 ---TIAAFKGRTIHTFHTEGAGGGHAPDIIKVAGEPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPSIPEDVAFAE- 335 (568)
T ss_pred ---HHHhcCCCEEEEEeecCCCcCCchHHHHHhhcCCCccCCCCCCCCCccCchhhhcCeEEeecCCCCCCcchhhhhh-
Confidence 12233456678888652 1222677777776642 2222222110 12222211111211
Q ss_pred cceeecCCCCCcccHHHH-HHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCC---
Q 009282 335 AKYVMSPPIRASGHNKAL-QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI--- 410 (538)
Q Consensus 335 ~~~~~~p~~r~~~~~~~l-~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~l--- 410 (538)
.|.+.+..+. .-+++.|+..+++||++....-. .+++. .+..........|.+
T Consensus 336 --------srir~~t~~ae~~l~d~Ga~~~~~SD~p~~~~~~----~~~~r-----------~~q~A~~r~~~~G~~~~d 392 (568)
T PRK13207 336 --------SRIRRETIAAEDILHDLGAISMISSDSQAMGRVG----EVIIR-----------TWQTAHKMKVQRGPLPGD 392 (568)
T ss_pred --------hhccceeecccchhhhCCCEEEecCCcccccccc----cchhH-----------HHHHHHHHHHccCCCCcc
Confidence 1111111122 23778899999999987442100 00111 111111000011222
Q ss_pred ----CHHHH---HHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEE
Q 009282 411 ----SVTDY---VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 483 (538)
Q Consensus 411 ----s~~ea---l~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v 483 (538)
+.+.+ |+++|+|||+++|+++.+|+|++||.||||||+.+.+ ..++..||+
T Consensus 393 ~~~~~n~ri~~~l~~~T~npA~alG~~~~vGsIe~Gk~ADlVvld~d~f----------------------~~~~~~ti~ 450 (568)
T PRK13207 393 SGRNDNFRVKRYIAKYTINPAIAHGISHEVGSVEVGKLADLVLWKPAFF----------------------GVKPELVLK 450 (568)
T ss_pred cccCccchHHHHHHHHhHHHHHHcCCCcCccccCCCCcCCEEEECchhc----------------------CCCceEEEE
Confidence 11222 9999999999999988899999999999999997643 235789999
Q ss_pred CCEEEEEC-CeeeccC
Q 009282 484 GGRVVWEN-DELNVVP 498 (538)
Q Consensus 484 ~G~~V~~~-~~~~~~~ 498 (538)
+|+++|.. |++....
T Consensus 451 ~G~iv~~~~gd~~as~ 466 (568)
T PRK13207 451 GGMIAWAPMGDPNASI 466 (568)
T ss_pred CCEEEEecCCCccccC
Confidence 99999998 8887764
|
|
| >cd01313 Met_dep_hydrolase_E Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=281.62 Aligned_cols=349 Identities=17% Similarity=0.109 Sum_probs=220.8
Q ss_pred CCCc-eeeeE-EEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCC---------------------
Q 009282 65 AHHQ-QIADV-YVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS--------------------- 121 (538)
Q Consensus 65 ~~~~-~~~~V-~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~--------------------- 121 (538)
+++. ++++| +|+||||++||+... .++||+.|++|+|||||+|+|++......
T Consensus 4 ~~~~~~~~~i~~v~~g~I~~Vg~~~~----~~~iD~~g~lv~PGfVn~H~Hl~~~~~rg~~~~~~~~~~~l~~w~~~~~~ 79 (418)
T cd01313 4 PEGWERNVRIEVDADGRIAAVNPDTA----TEAVALLGGALLPGMPNLHSHAFQRAMAGLTEYRGSAADSFWTWRELMYR 79 (418)
T ss_pred CCceecCeEEEEeCCCeEEEecCCCC----CcccccCCCeeccCccccCccHHHHHhcccccccCCCCCChhhHHHHHHH
Confidence 4444 57899 999999999998542 35699999999999999999998752110
Q ss_pred ----CChhhHHH----HHHHHHhCCcEEEecccCCCC-----------CCHHHHHHHHHHHhcccceeeeeeee--e--e
Q 009282 122 ----ETIDDFFS----GQAAALAGGTTMHIDFVIPIN-----------GSLTAGFEAYEKKAKNSCMDYGFHMA--I--T 178 (538)
Q Consensus 122 ----~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~ 178 (538)
.++++++. .+..++++||||++|+..... .......++..+.+.+..+...+... . .
T Consensus 80 ~~~~~t~e~~~~~a~~~~~e~l~~G~Ttv~d~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~GiR~~~~~~~~~~~~~~~~ 159 (418)
T cd01313 80 FAARLTPEQIEAIARQLYIEMLLAGITAVGEFHYVHHDPDGTPYADPAELAQRVIAAASDAGIGITLLPVLYARAGFGGP 159 (418)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhCCCEEEEeeeeccCCCCCccCChhhhHHHHHHHHHHhCCeEEeeeeEEeccCCCCC
Confidence 12222221 233458899999999753211 01233455555555554332222110 0 0
Q ss_pred c-C---------ChhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHH
Q 009282 179 K-W---------DEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQK 246 (538)
Q Consensus 179 ~-~---------~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~~~~~ 246 (538)
. . .++..+.+.++... .....+...+.+++...++.+.++++++.|++ |+++++|+. +..+.....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~s~e~l~~~~~~a~~-g~~i~~H~~e~~~e~~~~~- 237 (418)
T cd01313 160 APNPGQRRFINGYEDFLGLLEKALRAVKEHAAARIGVAPHSLRAVPAEQLAALAALASE-KAPVHIHLAEQPKEVDDCL- 237 (418)
T ss_pred CCchhhhhhcccHHHHHHHHHHHhhhhccCCceEEEEccCCCCCCCHHHHHHHHHHHhc-CCceEEEeCCCHHHHHHHH-
Confidence 0 0 01122222222111 12234566666677777899999999999999 999999994 333222222
Q ss_pred HHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccc
Q 009282 247 RMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (538)
Q Consensus 247 ~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~ 326 (538)
..+|... ++.+.+ ...++.++.+.||...++ ++++++++.|+.+++||.+
T Consensus 238 --~~~g~~~----------------i~~l~~-~g~l~~~~~~~H~~~l~~-~~~~~la~~g~~v~~~P~s---------- 287 (418)
T cd01313 238 --AAHGRRP----------------VELLLD-HGHLDARWCLVHATHLTD-NETLLLGRSGAVVGLCPTT---------- 287 (418)
T ss_pred --HHcCCCH----------------HHHHHH-cCCCCCCEEEEeCCCCCH-HHHHHHHHcCCEEEECCCc----------
Confidence 2233321 111222 245678899999999887 8899999999999999875
Q ss_pred cCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh
Q 009282 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406 (538)
Q Consensus 327 ~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 406 (538)
++..+.+. + ++++++++|+++++|||.....+ ++. ++.....+.+...
T Consensus 288 ---n~~lg~g~---~---------p~~~l~~~Gv~v~lGtD~~~~~d--------~~~---------~~~~~~~~~~~~~ 335 (418)
T cd01313 288 ---EANLGDGI---F---------PAAALLAAGGRIGIGSDSNARID--------LLE---------ELRQLEYSQRLRD 335 (418)
T ss_pred ---hhhccCCC---C---------CHHHHHHCCCcEEEecCCCCCcC--------HHH---------HHHHHHHHHHHHh
Confidence 22222221 2 27899999999999999643211 111 1222222212211
Q ss_pred --------cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEE
Q 009282 407 --------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKV 478 (538)
Q Consensus 407 --------~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 478 (538)
...++++++|+++|.|+|+++|++ .|+|++||.||||++|.+.++..+.. ..++.....|.+. ..+|
T Consensus 336 ~~~~~~~~~~~~~~~~~l~~~T~~gA~alg~~--~Gsle~Gk~ADlvvld~~~~~~~p~~-~~~~~~~lv~~~~--~~~V 410 (418)
T cd01313 336 RARNVLATAGGSSARALLDAALAGGAQALGLA--TGALEAGARADLLSLDLDHPSLAGAL-PDTLLDAWVFAAG--DREV 410 (418)
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHhCCC--CCeECCCCccCEEEEcCCCccccCCC-chhHHHHHeecCC--CCce
Confidence 236999999999999999999994 89999999999999998877665420 0122233445544 4589
Q ss_pred EEEEECCE
Q 009282 479 EVTIAGGR 486 (538)
Q Consensus 479 ~~V~v~G~ 486 (538)
..|||+|+
T Consensus 411 ~~v~V~G~ 418 (418)
T cd01313 411 RDVVVGGR 418 (418)
T ss_pred eEEEeCCC
Confidence 99999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >COG0402 SsnA Cytosine deaminase and related metal-dependent hydrolases [Nucleotide transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=279.08 Aligned_cols=373 Identities=22% Similarity=0.321 Sum_probs=253.3
Q ss_pred cEEEECcEEEcCCCc---eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-----------
Q 009282 54 KILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM----------- 119 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~---~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~----------- 119 (538)
.++++|..++..++. ++++|.|+||||+.||+..+.+++.++||++|++|+|||||+|+|+.....
T Consensus 3 ~~~i~~~~~~~~d~~~~~~~~~~~i~~g~I~~ig~~~~~~~~~~~iD~~~~lv~Pgfvn~H~H~~~t~~~g~~~~~~l~~ 82 (421)
T COG0402 3 MLLIRGDLLLTNDPEGRIEDGDLVIEDGKIVAIGANAEGPPDEEVIDAKGKLVLPGFVNAHTHLDQTLLRGLADDLPLLE 82 (421)
T ss_pred ceeeeCcEEeecCcccceeeeeEEEcCCEEEEeCCcCCCCCCceeecCCCCEeccCccccccchHHHHHhhhhcccchHH
Confidence 467888888876543 569999999999999997654456899999999999999999999877621
Q ss_pred -----------CCCChhhHHHH----HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee-----eeec
Q 009282 120 -----------GSETIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-----AITK 179 (538)
Q Consensus 120 -----------~~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 179 (538)
...++++++.. ...++++|+|+++.............+++..+.+.+......+.. ....
T Consensus 83 wl~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~t~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~p~~~~~ 162 (421)
T COG0402 83 WLERYVWPREARLLTEEDLYARALLALLEMLRNGTTTARTHVDVVAESADAAFEAALEVGLRAVLGPVLQDVAFPDPGAE 162 (421)
T ss_pred HHHHHHhHHHhhcCCHHHHHHHHHHHHHHHHhcCccccccccchhhhhHHHHHHHHHHhCCeeEeeeccccCCCCccccc
Confidence 11234444332 344689999997654333222345566677776666433333322 1111
Q ss_pred CChhhHHHHHHHH-HHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEc-CChhhHHHHHHHHHHcCCCCcc
Q 009282 180 WDEVVSDEMEVMV-KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPE 257 (538)
Q Consensus 180 ~~~~~~~~~~~~~-~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-~~~~~~~~~~~~~~~~g~~~~~ 257 (538)
..++ +++.+++. +..+.....+...++..+.++++.++.+.+.++++|+++++|+ ++..+.....+ ..|...
T Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~v~iH~~E~~~e~~~~~~---~~g~~~-- 236 (421)
T COG0402 163 TDEE-LEETEELLREAHGLGRDVVGLAPHFPYTVSPELLESLDELARKYGLPVHIHLAETLDEVERVLE---PYGARP-- 236 (421)
T ss_pred chHH-HHHHHHHHHHHhcCCCeeEEEecCCCCCCCHHHHHHHHHHHhcCCCceEEEecCcHHHHHHHHh---hcCCCH--
Confidence 1111 22233333 2335556667777888888999999999999999999999999 55655554443 233221
Q ss_pred cccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccce
Q 009282 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (538)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
+ +-+......+.+.++.|+.+... ++++.+++.|+.|++||.+ |+.++++.
T Consensus 237 --------------~-~~~~~~g~l~~~~~~~H~~~~~~-~e~~~l~~~g~~v~~cP~s-------------N~~L~sG~ 287 (421)
T COG0402 237 --------------V-ERLDLLGLLGSHTLLAHCVHLSE-EELELLAESGASVVHCPRS-------------NLKLGSGI 287 (421)
T ss_pred --------------H-HHHHHcCCCCCCeEEEEeccCCH-HHHHHHhhCCCeEEECcch-------------hccccCCC
Confidence 1 11122334456788999998887 8888899999999999997 66665552
Q ss_pred eecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhc---CCCCHHH
Q 009282 338 VMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES---GQISVTD 414 (538)
Q Consensus 338 ~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~---~~ls~~e 414 (538)
.| ++.+++.|+++++|||...++....++ . ++.....+++.... ..... +
T Consensus 288 --~p----------~~~~~~~gv~v~~gTD~~~~~~~~d~l-----~---------~~~~a~~l~~~~~~~~~~~~~~-~ 340 (421)
T COG0402 288 --AP----------VRRLLERGVNVALGTDGAASNNVLDML-----R---------EMRTADLLQKLAGGLLAAQLPG-E 340 (421)
T ss_pred --CC----------HHHHHHcCCCEEEecCCccccChHHHH-----H---------HHHHHHHHHHhhcCCCcccchH-H
Confidence 22 789999999999999988777644322 1 33333333333221 11222 3
Q ss_pred HHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCee
Q 009282 415 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 494 (538)
Q Consensus 415 al~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~ 494 (538)
+|+++|.|+|++||+ +++|+|++||.|||||+|.+.+...+.. +.....+... ...|..|+++|+.|+++++.
T Consensus 341 ~l~~aT~~gA~alg~-~~~G~le~G~~ADlvvld~~~~~~~~~~----~~~~~v~~~~--~~~v~~v~~~g~~v~~~~~~ 413 (421)
T COG0402 341 ALDMATLGGAKALGL-DDIGSLEVGKKADLVVLDASAPHLAPLR----PVSRLVFAAG--GKDVDRVLVDGRLVMEDGRL 413 (421)
T ss_pred HHHHHHhhHHHHcCC-cccCCcccccccCEEEEcCCCCcccccc----HHHHHHHhcC--CCceeEEEECCEEEEEccee
Confidence 899999999999999 7899999999999999999876443321 1111222222 34799999999999999988
Q ss_pred e
Q 009282 495 N 495 (538)
Q Consensus 495 ~ 495 (538)
.
T Consensus 414 ~ 414 (421)
T COG0402 414 L 414 (421)
T ss_pred h
Confidence 7
|
|
| >TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=267.52 Aligned_cols=360 Identities=18% Similarity=0.195 Sum_probs=220.5
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCC----CCceEEecCCCeeecccccccccccccc-CCCCChhhHHH
Q 009282 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFS 129 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~----~~~~vID~~G~~v~PGlID~H~H~~~~~-~~~~~~~~~~~ 129 (538)
++|+|++|++++.....+|+|+||||++|++..+.+ ....++|++|++|+|||||.|+|+.... .+......-+.
T Consensus 2 ~li~n~~v~~~~~~~~~dvlI~~gkI~~Ig~~~~~~~~~~~~~~i~d~~G~~v~PGlID~HvH~~~gg~~~~~~~~~~e~ 81 (389)
T TIGR01975 2 TLLKGAEVYAPEYIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQHVHIIGGGGEGGPTTRTPEL 81 (389)
T ss_pred EEEECcEEEcCCcCcceeEEEECCEEEEEcCCccccccCCCCeEEECCCCCEEccCEeehhhccccccccCCCccCCHHH
Confidence 589999999987666789999999999999875542 2333556699999999999999987641 11110011223
Q ss_pred HHHHHHhCCcEEEecccCCCCC-----CHHHHHHHHHHHhcccceeeeee-eeeecCChhhHHHHHHHHHHcCCcEEE-E
Q 009282 130 GQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYGFH-MAITKWDEVVSDEMEVMVKEKGINSFK-F 202 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~ik-~ 202 (538)
.+..++++||||++|+.+.... ...+..+.+...+-+.+...+.+ .+....++....++.. .....++| +
T Consensus 82 ~~~e~l~~GvTTv~d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~~g~~~~p~~t~t~~~~~d~~~---~d~iiG~~~i 158 (389)
T TIGR01975 82 TLSDITKGGVTTVVGLLGTDGITRHMESLLAKARALEEEGISCYMLTGAYHVPSRTITGSVESDLLL---IDKVIGVGEI 158 (389)
T ss_pred HHHHHHhCCcEEEecCcccCccccChhhHHHHHHHHHHhCCEEEEEcccccCCCcccccchhhheee---ehhhcccceE
Confidence 5777899999999998643221 23445555555554433332221 1222222222222221 22344553 5
Q ss_pred EeeeCCCccCCHHHHHHHHHHHHhcC----Ce--EEEEcCChh-hHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 203 FMAYKGSFMINDELLIEGFKRCKSLG----AL--AMVHAENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g----~~--v~~H~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
.++.+-....+.+.+.++.+.|+..| ++ +++|..+.. ..+...+.+....+..
T Consensus 159 a~sd~r~~~~~~~~l~~~~~~~~~~g~~~~~~g~~~vH~g~~~~~l~~l~~~~~~~di~~-------------------- 218 (389)
T TIGR01975 159 AISDHRSAQPTVEHLTNMAAEARVGGLLGGKPGIVNFHVGDSKRALQPIYELVENTDVPI-------------------- 218 (389)
T ss_pred EEccCcCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCchhhHHHHHHHHHhcCCCh--------------------
Confidence 56666566778999999999999988 88 999985443 2322222222222211
Q ss_pred HHHHHHcCCCEEEEeccCH-HHH-HHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHH
Q 009282 276 IRLAEFVNTPLYVVHVMSM-DAM-EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~~~-~~~-~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~ 353 (538)
..++-.|+... .-. +.++.+++ |..+-.+... ....+.+ ......+.++
T Consensus 219 --------~~f~pth~~r~~~l~~~~i~~~~~-gg~iDv~~~~-----~~~~l~~---------------~~~~~~~~~~ 269 (389)
T TIGR01975 219 --------TQFLPTHINRNVPLFEAGLEFAKK-GGTIDLTSSI-----DPQFRKE---------------GEVAPAEGIK 269 (389)
T ss_pred --------hheecCccCCCHHHHHHHHHHHHh-CCcEEEeCCC-----Cccchhc---------------cccChHHHHH
Confidence 11122344321 112 44554444 4333222110 0000000 0001134678
Q ss_pred HHHhcCCce---EEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 354 AALATGILQ---LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 354 ~~l~~Gv~~---~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
.++++|+++ +++||.....+...+. -.....|+.+... +...++.++..+++++++||+++|.|||++||++
T Consensus 270 ~~~~~Gv~~~~i~isSD~~gs~p~~~~~----g~~~~~g~g~~~s-l~~~~~~lv~~g~ls~~eal~~~T~npA~~Lgl~ 344 (389)
T TIGR01975 270 KALEAGVPLEKVTFSSDGNGSQPFFDEN----GELTGLGVGSFET-LFEEVREAVKDGDVPLEKALRVITSNVAGVLNLT 344 (389)
T ss_pred HHHHcCCCcceEEEEeCCCCCCCccccc----cccccCCcCcHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhCCC
Confidence 999999974 9999975322111100 0111233444332 3344556777888999999999999999999995
Q ss_pred CCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeecc
Q 009282 431 PRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497 (538)
Q Consensus 431 ~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~ 497 (538)
++|+|++|+.|||++||.+ .++..||.+|++++++|+++.+
T Consensus 345 -~~G~I~~G~~ADlvild~~-------------------------~~i~~v~~~G~~v~~~g~~~~~ 385 (389)
T TIGR01975 345 -GKGEISPGNDADLVVLDPD-------------------------LRIHSVIARGKLMVKDGKACVK 385 (389)
T ss_pred -CCCeECCCCcCCEEEEcCC-------------------------CCEEEEEECCEEEEECCEEEec
Confidence 7899999999999999965 1578999999999999998853
|
The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. |
| >COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=264.91 Aligned_cols=354 Identities=23% Similarity=0.314 Sum_probs=249.7
Q ss_pred EEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc--cCCCCChhhHHHHH
Q 009282 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME--FMGSETIDDFFSGQ 131 (538)
Q Consensus 55 ~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~--~~~~~~~~~~~~~~ 131 (538)
.+|+|++|+++... .++.|+|+||+|.+|.+ .+.|.+.++||.+|.+|+|||||.|+|.+.+ ++...+.+.+....
T Consensus 2 ~~~~~~~i~t~~~~~~~~~v~i~dg~I~~i~~-~~~p~~~e~id~~G~~l~PGfID~hihG~gG~~~~D~~~~~~l~~i~ 80 (380)
T COG1820 2 YALKNGRIFTGHGVLDGGAVVIEDGKIEAVVP-AELPADAEIIDLKGALLVPGFIDLHIHGGGGADFMDAGSVETLETMA 80 (380)
T ss_pred ceeeccEEEcCcceEECcEEEEcCCEEEEEec-CcCCCcceeecCCCCEecccEEEEeecCcCcccccCccCHHHHHHHH
Confidence 47899999999987 46699999999999998 4467789999999999999999999999887 33345677788889
Q ss_pred HHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCC
Q 009282 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (538)
+..++.|+|+++......+. .+.+.++...+... ...--.|.|++.+..+.+ +.|+...+.+
T Consensus 81 ~~~~~~GtTsfLpT~iT~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls~~----------kkGAh~~~~i------ 144 (380)
T COG1820 81 EAHLRHGTTSFLPTLITASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLSPE----------KKGAHNPEYI------ 144 (380)
T ss_pred HHhhhcCeeeeeeecccCCHHHHHHHHHHHHHHHhccCCceEEEEeecCccCHh----------hccCCCHHHh------
Confidence 99999999999966433332 44445554444433 344556777777776642 4565543322
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
...+.+++.++++.++. .+...+=+++.....+.+..+.+.|+..+.+|+++ .+++..++++. |. .+.+
T Consensus 145 r~~~~~~~~~~~~~a~g-~i~~vTlAPE~~~~~e~i~~l~~~giivs~GHS~A-----tye~~~~a~~~----Ga-~~~T 213 (380)
T COG1820 145 RPPDPEELEQLIAAADG-LIKLVTLAPELDGTKELIRLLANAGIVVSIGHSNA-----TYEQARAAFEA----GA-TFVT 213 (380)
T ss_pred CCCCHHHHHHHHhhccC-ceEEEEECCCCCCCHHHHHHHHhCCeEEEecCccc-----cHHHHHHHHHh----Cc-cEEE
Confidence 23478899999888876 56666666655555688888889999988888854 33445555544 22 2577
Q ss_pred eccCHHHHHHHHHHHHcCC--------cEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc--C
Q 009282 290 HVMSMDAMEEIAKARKAGQ--------RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT--G 359 (538)
Q Consensus 290 h~~~~~~~~~i~~~~~~g~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~--G 359 (538)
|+.++- ..+. .++.|+ .++++...+.++.++.. ++-+++. +
T Consensus 214 HlfNaM--s~l~-hREPGvvGA~L~~~~~~~eiIaDG~HVhP~~--------------------------~~ia~~~kg~ 264 (380)
T COG1820 214 HLFNAM--SGLH-HREPGVVGAALDNPDVYAEIIADGVHVHPAA--------------------------IRLALKAKGG 264 (380)
T ss_pred eeccCC--CCCC-CCCCcccceeecCCCeEEEEEccCcccCHHH--------------------------HHHHHhccCC
Confidence 776532 1121 223231 34555555555444432 3323222 3
Q ss_pred CceEEeCCCCCCChh---hhhcC------ccCcccCCCC-CcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 360 ILQLVGTDHCAFNST---QKAFG------IDDFRKIPNG-VNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 360 v~~~lgtD~~~~~~~---~~~~~------~~~~~~~~~g-~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
-++++-||.....-. ...++ .+.......| ++|....+...++++++.++++++||++|+|.+||+++|+
T Consensus 265 ~~i~LVTDam~a~G~~dg~y~lgg~~V~v~~g~~~~~~GtLAGS~Ltm~~avrn~v~~~~~~~~eAv~maS~~PA~~lgl 344 (380)
T COG1820 265 DKIVLVTDAMAAAGLPDGEYILGGQTVTVADGARRLEDGTLAGSTLTMDEAVRNLVEWGGISLAEAVRMASLNPAKALGL 344 (380)
T ss_pred ceEEEEEccccccCCCCccEEECCEEEEEECCEEECCCCceeeeeeeHHHHHHHHHHHhCCCHHHHHHHhhhhHHHHhCC
Confidence 468888986543222 11121 2223344455 7888888899999999999999999999999999999999
Q ss_pred CCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE
Q 009282 430 YPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 430 ~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
++++|+|++||.||||+||.| -+|+.||++|+++++
T Consensus 345 ~~~~G~i~~G~~Adlvvld~d-------------------------~~v~~T~i~G~~~~~ 380 (380)
T COG1820 345 DDRLGSIKPGKDADLVVLDDD-------------------------LNVKATWINGEKVFN 380 (380)
T ss_pred cCcccccCCCcccCEEEECCC-------------------------CcEEEEEECCEEeeC
Confidence 889999999999999999955 379999999999874
|
|
| >PRK14085 imidazolonepropionase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=272.84 Aligned_cols=315 Identities=20% Similarity=0.184 Sum_probs=203.2
Q ss_pred cEEEEC-cEEEcCCC---------ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-C--
Q 009282 54 KILIKG-GTVVNAHH---------QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-- 120 (538)
Q Consensus 54 ~~~i~n-~~vv~~~~---------~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~-- 120 (538)
+++|+| +.|++++. .++++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..... +
T Consensus 2 ~~l~~~~~~i~~~~~~~~~~~~~~~~~~~v~i~~g~I~~Vg~~~~~~~~~~~iD~~g~~v~PGlId~H~Hl~~~~~r~~~ 81 (382)
T PRK14085 2 STLITNIGELVTNDPELGEGPLGVLRDAAVVVEGGRVAWVGPAADAPAADERVDAGGRAVLPGFVDSHSHLVFAGDRSAE 81 (382)
T ss_pred cEEEEcccEEEcCCCcccCCCcccccCcEEEEECCEEEEEcCCccCCCCCeEEeCCCCEEecCeEecCcCccccCChhHH
Confidence 578999 59999762 2578999999999999986544456789999999999999999999965311 0
Q ss_pred -----------------------CCChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc--ccceee
Q 009282 121 -----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK--NSCMDY 171 (538)
Q Consensus 121 -----------------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 171 (538)
..+.++++. .+..++++|+||+++...... .....++.....+. ......
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~t~e~~~~~a~~~~~~~l~~G~Ttv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 160 (382)
T PRK14085 82 FAARMAGEPYSAGGIRTTVAATRAASDEELRANVRRLVAEALRQGTTTVETKTGYGL-TVEDEARSARIAAEFTDEVTFL 160 (382)
T ss_pred HHhhhcCCCccCCChHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCceEEEcCCcCCC-CHHHHHHHHHHHHHhhhcceee
Confidence 112333332 345568999999998753221 22333333222111 011111
Q ss_pred eeeeeeec--CC-hhhHHHH----HHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHH
Q 009282 172 GFHMAITK--WD-EVVSDEM----EVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG 244 (538)
Q Consensus 172 ~~~~~~~~--~~-~~~~~~~----~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~ 244 (538)
+.+..... .+ ++.+..+ .... ......+|++.+. ..++.++++++++.|+++|+++.+|+.+.... ..
T Consensus 161 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~idi~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~-~~ 235 (382)
T PRK14085 161 GAHVVPPEYAGDADEYVDLVCGPMLDAV-APHARWIDVFCER---GAFDEDQSRRVLTAGRAAGLGLRVHGNQLGPG-PG 235 (382)
T ss_pred ccccCCcccCCCHHHHHHHHHHHHHHHH-HHhCCeEEEEecC---CCCCHHHHHHHHHHHHHcCCCeEEEeCcccCC-hH
Confidence 11110111 11 1122222 2333 3457778887653 24678999999999999999999999642110 11
Q ss_pred HHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcc
Q 009282 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324 (538)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 324 (538)
++.+.+.|.. .+.|+...++ +.++++++.|+.++.+|...
T Consensus 236 v~~~~~~g~~--------------------------------~i~H~~~l~~-~~~~~la~~gv~~~~~P~~~------- 275 (382)
T PRK14085 236 VRLAVELGAA--------------------------------SVDHCTYLTD-ADVDALAGSGTVATLLPGAE------- 275 (382)
T ss_pred HHHHHHcCCC--------------------------------cHHHhCCCCH-HHHHHHHHcCCEEEECcHHH-------
Confidence 2222222221 3667777776 88999999998777665531
Q ss_pred cccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHh
Q 009282 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 404 (538)
+..... ..+++.++++|+++++|||+.+..+. ...+.......
T Consensus 276 ------~~~~~~------------~~~~~~l~~aGv~v~lgsD~~~~~~~-------------------~~~~~~~~~~~ 318 (382)
T PRK14085 276 ------FSTRQP------------YPDARRLLDAGVTVALASDCNPGSSY-------------------TSSMPFCVALA 318 (382)
T ss_pred ------HhcCCC------------CchHHHHHHCCCcEEEEeCCCCCCCh-------------------HHHHHHHHHHH
Confidence 111111 13489999999999999997533211 11122222233
Q ss_pred hhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCc
Q 009282 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 452 (538)
Q Consensus 405 ~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~ 452 (538)
+...+++++++|+++|.|||+++|++ +.|+|++||.||||++|.+..
T Consensus 319 ~~~~~l~~~~al~~aT~~~A~~lg~~-~~G~l~~G~~ADlvv~d~~~~ 365 (382)
T PRK14085 319 VRQMGMTPAEAVWAATAGGARALRRD-DVGVLAVGARADLHVLDAPSH 365 (382)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCC-CCCCcCCCCCCCEEEEcCCCC
Confidence 44567999999999999999999996 589999999999999997653
|
|
| >COG1001 AdeC Adenine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=271.80 Aligned_cols=333 Identities=20% Similarity=0.284 Sum_probs=239.9
Q ss_pred cCcccEEEECcEEEcCCC--ceeeeEEEeCCEEEEe-cCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhh
Q 009282 50 QSSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAV-QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDD 126 (538)
Q Consensus 50 ~~~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~V-g~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~ 126 (538)
+...+++++|+++++.-. +..++|+|.+|||+.| ++.. .++.++||+.|+||.|||||.|.|+..+ ..+|..
T Consensus 21 ~~~adlv~~ng~ivdv~~gei~~~dIaI~~grI~~v~~~~~--~e~~~~iDa~g~yivPGfID~H~HIESS---m~tP~~ 95 (584)
T COG1001 21 RAKADLVLKNGRIVDVVTGEIYKGDIAIAGGRIVGVIGEYR--AEATEVIDAAGRYIVPGFIDAHLHIESS---MLTPSE 95 (584)
T ss_pred CCCCCEEEECCEEEEeeeccEEeeeEEEECCEEEEeecCcC--cccceeecCCCCEeccceeecceecccc---ccCHHH
Confidence 337899999999999654 4689999999999995 4433 4578999999999999999999999886 567777
Q ss_pred HHHHHHHHHhCCcEEEe-cccCCCCCCHHHHHHHHHHHhcccceeeeeeeee-ec---CC--h--hhHHHHHHHHHHcCC
Q 009282 127 FFSGQAAALAGGTTMHI-DFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TK---WD--E--VVSDEMEVMVKEKGI 197 (538)
Q Consensus 127 ~~~~~~~~l~~GvTt~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~--~--~~~~~~~~~~~~~g~ 197 (538)
+ ++..+.+|+||++ |.+...+....+.++...+.....++++.++.+. .+ .+ + =..+.++++.++..+
T Consensus 96 F---A~~Vlp~GtTtvV~DPHEIaNV~G~~Gi~~ml~~a~~~pl~~~~~~pScVPat~~Et~Ga~l~a~~i~e~~~~p~V 172 (584)
T COG1001 96 F---ARAVLPHGTTTVVSDPHEIANVLGEDGIRFMLDEAKETPLKVYVMLPSCVPATPFETSGAELTAEDIKELLEHPEV 172 (584)
T ss_pred H---HHHhhccCceEEeeCcHHHHhhccHHHHHHHHHHHhhCCeEEEEecccCccCCccccCCceecHHHHHHHhhCCCc
Confidence 7 7888999999987 5555555567788888888877777777665431 11 11 1 135677777777888
Q ss_pred cEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHH
Q 009282 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR 277 (538)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~ 277 (538)
-++..++++++.-. .++.+...+++++++|+++..|++.... ..+..+...|+.
T Consensus 173 igl~E~Mn~pgVi~-~D~~~l~kl~a~~~~~k~VdGHapgl~g--~~Ln~Y~aaGi~----------------------- 226 (584)
T COG1001 173 IGLGEMMNFPGVIE-GDPDMLAKLEAARKAGKPVDGHAPGLSG--KELNAYIAAGIS----------------------- 226 (584)
T ss_pred cchhhhcCCchhcc-CCHHHHHHHHHHHHcCCeecccCCCCCh--HHHHHHHhcCCC-----------------------
Confidence 88888888887665 4556677788999999999999987653 334444555553
Q ss_pred HHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHH-HHHH
Q 009282 278 LAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL-QAAL 356 (538)
Q Consensus 278 ~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l-~~~l 356 (538)
..|.+...+ +.+++++ .|..+...-. +..+ +...+ ...-
T Consensus 227 ----------tDHE~~t~E-Ea~~klr-~Gm~i~iReG-------------------S~a~---------dl~~l~~~i~ 266 (584)
T COG1001 227 ----------TDHESTTAE-EALEKLR-LGMKIMIREG-------------------SAAK---------DLAALLPAIT 266 (584)
T ss_pred ----------cCcccCCHH-HHHHHHh-CCcEEEEEcC-------------------chhh---------hHHHHHHHHh
Confidence 334443332 5555554 6766643321 1111 11222 2333
Q ss_pred hcC-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 357 ATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 357 ~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
+.| -.++++||....++-.. +-.+...++.+++.| +++.+|++|||+|||+.+|+++ +|.
T Consensus 267 e~~~~~~~lcTDD~~p~dl~~-----------------eGhld~~vR~Ai~~G-v~p~~a~qmAtiN~A~~~gl~~-~G~ 327 (584)
T COG1001 267 ELGSRRVMLCTDDRHPDDLLE-----------------EGHLDRLVRRAIEEG-VDPLDAYQMATINPAEHYGLDD-LGL 327 (584)
T ss_pred hcCCceEEEECCCCChhHhhh-----------------cCCHHHHHHHHHHcC-CCHHHHHHHHhcCHHHHcCCcc-ccc
Confidence 335 46899999764432111 335677777777776 9999999999999999999954 999
Q ss_pred cccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 436 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 436 I~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
|+||..||||+++ |.. .-+|..|+++|++|.++|+-+..+
T Consensus 328 iAPG~~ADlvi~~-DL~----------------------~~~v~~V~~~G~~v~~~g~~l~~~ 367 (584)
T COG1001 328 IAPGRRADLVILE-DLR----------------------NFKVTSVLIKGRVVAEDGKALIKD 367 (584)
T ss_pred ccCCccccEEEEc-ccc----------------------cCceeEEEECCEEEecCCceeccc
Confidence 9999999999997 321 237999999999999999855543
|
|
| >PRK10657 isoaspartyl dipeptidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=270.03 Aligned_cols=357 Identities=18% Similarity=0.213 Sum_probs=214.6
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCC---CCceEEecCCCeeeccccccccccccccCC-CCChhhHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFS 129 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~---~~~~vID~~G~~v~PGlID~H~H~~~~~~~-~~~~~~~~~ 129 (538)
.++|+|++|++++...+++|+|+||+|++|++..+.+ .+.++||++|++|+|||||+|+|+...... .........
T Consensus 2 ~~~i~~~~v~~~~~~~~~~i~i~~g~I~~v~~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~t~~~ 81 (388)
T PRK10657 2 FTLLKNAHVYAPEDLGKKDILIAGGKIIAIADNINIPDIVPDIEVIDASGKILVPGFIDQHVHIIGGGGEGGFSTRTPEV 81 (388)
T ss_pred eEEEEccEEECCCCCcceEEEEECCEEEEecCCccccccCCCCeEEECCCCEEcccceeeeeCcccCCCCcccccCCHHH
Confidence 4789999999987666789999999999998754321 346899999999999999999998742100 011123335
Q ss_pred HHHHHHhCCcEEEecccCCCCC-CHHHHHHHH----HHHhcccceeeeeee-eeecCChhhHHHHHHHHHHcCCcEE-EE
Q 009282 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAY----EKKAKNSCMDYGFHM-AITKWDEVVSDEMEVMVKEKGINSF-KF 202 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~i-k~ 202 (538)
.+..++++||||++|+...... ...+.+... .+.+-+.+...+++. ......+...+++ ... ....++ ++
T Consensus 82 ~~~~~~~~GvTTvvd~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~g~g~~ 158 (388)
T PRK10657 82 QLSDLTEAGITTVVGLLGTDGITRSMESLLAKARALEEEGISAYMYTGSYHVPVRTITGSIRKDI-VLI--DKVIGVGEI 158 (388)
T ss_pred HHHHHHhCCceEEECCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEEecCCCCCchhhhcchhhce-ehh--hhhhCccee
Confidence 6788899999999998733221 112222222 222222221111111 0000111111111 111 111122 34
Q ss_pred EeeeCCCccCCHHHHHHHHHHHHhcCC------eEEEEcCC-hhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 203 FMAYKGSFMINDELLIEGFKRCKSLGA------LAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
...++.....+.+.+.++.+.++..+. ++++|+.. ....+...+.+.+.|+..
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~~g~~~~i~vH~~~~~~~l~~v~~~l~~~Gv~~-------------------- 218 (388)
T PRK10657 159 AISDHRSSQPTVEELARLAAEARVGGLLSGKAGIVHVHMGDGKKGLQPLFELLENTDIPI-------------------- 218 (388)
T ss_pred eeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHhcCCCc--------------------
Confidence 334444455688888888887775544 89999863 333222222333444432
Q ss_pred HHHHHHcCCCEEEEeccCH-HHHHHHHHHHHcCCcEEEe-ccccccccCcccccCCCcccccceeecCCCCCc---ccHH
Q 009282 276 IRLAEFVNTPLYVVHVMSM-DAMEEIAKARKAGQRVIGE-PVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS---GHNK 350 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~~~-~~~~~i~~~~~~g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~---~~~~ 350 (538)
..+...|+... ...+....+.++|..+... .++ +.+.. ...+
T Consensus 219 --------~~~~~~H~~~~~~~~~~~~~~~~~G~~~~v~~~~~-------------------------~~~~~~~~~~~~ 265 (388)
T PRK10657 219 --------SQFLPTHVNRNEPLFEQALEFAKKGGVIDLTTSDP-------------------------DFLGEGEVAPAE 265 (388)
T ss_pred --------ceeeCcccCCCHHHHHHHHHHHHcCCeEEEecCCC-------------------------cccccCccCHHH
Confidence 12445665541 1113334455566655332 221 11111 2246
Q ss_pred HHHHHHhcCC---ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHc
Q 009282 351 ALQAALATGI---LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIF 427 (538)
Q Consensus 351 ~l~~~l~~Gv---~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~l 427 (538)
.++.+++.|+ +++++||+...++..... . ...+.|..+....+.. +...+...++|++++++++|.|||+++
T Consensus 266 ~l~~~~~~G~~~d~v~l~tD~~~~~~~~~~~---g-~~~~~g~~~~~~l~~~-~~~~~~~~gis~~~~l~~aT~npA~~l 340 (388)
T PRK10657 266 ALKRALEAGVPLSRVTLSSDGNGSLPKFDED---G-NLVGLGVGSVESLLEE-VRELVKDEGLPLEDALKPLTSNVARFL 340 (388)
T ss_pred HHHHHHHcCCChhheEEECCCCCCCceeccC---C-CEeccCcCchhhHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 6899999998 789999975432211000 0 0134555554433333 335555567999999999999999999
Q ss_pred CCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeecc
Q 009282 428 NVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497 (538)
Q Consensus 428 g~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~ 497 (538)
|+++ +|+|++|+.|||+++| +. .++..|+++|++|+++++++..
T Consensus 341 g~~~-~G~l~~G~~AD~vv~~-~~------------------------~~~~~~~~~G~~v~~~~~~~~~ 384 (388)
T PRK10657 341 KLNG-KGEILPGKDADLLVLD-DD------------------------LRIEQVIAKGKLMVKDGKALVK 384 (388)
T ss_pred CCCC-CCccCCCCccCEEEEC-CC------------------------CCEEEEEECCEEEEECCEEecc
Confidence 9965 8999999999999999 32 2689999999999999998774
|
|
| >PRK07572 cytosine deaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=276.81 Aligned_cols=359 Identities=18% Similarity=0.221 Sum_probs=212.8
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-CC----------
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS---------- 121 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~---------- 121 (538)
++++|+|++|+++. ...+|+|+||+|++|++..+. ...++||++|++|+|||||+|+|+...+. +.
T Consensus 2 ~~~~i~~~~i~~~~--~~~~i~i~~g~I~~v~~~~~~-~~~~~id~~g~~~~PG~id~h~h~~~~~~~~~~~~~~~g~l~ 78 (426)
T PRK07572 2 FDLIVRNANLPDGR--TGIDIGIAGGRIAAVEPGLQA-EAAEEIDAAGRLVSPPFVDPHFHMDATLSYGLPRVNASGTLL 78 (426)
T ss_pred CcEEEECeEECCCC--eeEEEEEECCEEEEecCCCCC-CcCceEeCCCCEEcccceehhhCcchhhccCCCCCCCCCCHH
Confidence 35789999999865 367899999999999986432 34689999999999999999999975421 10
Q ss_pred ------------CChhhHH----HHHHHHHhCCcEEEecccCCCCC---CHHHHHHHHHHHhcccceee-eeeeeeecCC
Q 009282 122 ------------ETIDDFF----SGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKNSCMDY-GFHMAITKWD 181 (538)
Q Consensus 122 ------------~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 181 (538)
.+++++. ..++.++++|||+++++...... ......+.....++...+.. .+........
T Consensus 79 e~l~~~~~~~~~~t~edl~~~a~~~~~e~l~~G~Ttvrd~~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~g~~~~ 158 (426)
T PRK07572 79 EGIALWGELKPLLTQEALVERALRYCDWAVARGLLAIRSHVDVCDPRLLAVEALLEVRERVAPYLDLQLVAFPQDGVLRS 158 (426)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEeeccccCCCcccHHHHHHHHHHHhhccceEEEEeccChhhccC
Confidence 2334433 23455689999999997432211 12222221111111111111 1111011111
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEc-CChhhHHHHHHHHHHcCCCCccccc
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGHA 260 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (538)
.+....+++.. +.|++.+............+.+.++.+++.|+++|+++.+|+ +........++.+
T Consensus 159 ~~~~~~~~~~l-~~g~d~iGg~p~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~~~------------ 225 (426)
T PRK07572 159 PGAVDNLERAL-DMGVDVVGGIPHFERTMADGAESVRLLCEIAAERGLRVDMHCDESDDPLSRHIETL------------ 225 (426)
T ss_pred ccHHHHHHHHH-HcCCCEEeCCCCCccccchHHHHHHHHHHHHHHcCCCeEEEECCCCChhHHHHHHH------------
Confidence 23345566666 567777642211111111224899999999999999999999 4444333222111
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHH------HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccc
Q 009282 261 LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (538)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~------~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
.....+ ....+ ++.+.|+.+.. ..+.++.+++.|+.+++||............
T Consensus 226 -----------~~~~~~-~G~~~-~v~~~H~~~l~~~~~~~~~~~~~~la~~g~~vv~~P~~n~~l~~~~~~-------- 284 (426)
T PRK07572 226 -----------AAETQR-LGLQG-RVAGSHLTSMHSMDNYYVSKLIPLMAEAGVNAIANPLINITLQGRHDT-------- 284 (426)
T ss_pred -----------HHHHHH-hCCCC-CEEEEccchhhcCCHHHHHHHHHHHHHcCCeEEECchhhhhhcCCCCC--------
Confidence 001111 11223 67889996533 2367899999999999998642111100000
Q ss_pred cceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCC-cchhhhHHHHHHHhhhcCCCC--
Q 009282 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGV-NGIEERMHLVWDTMVESGQIS-- 411 (538)
Q Consensus 335 ~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~-~g~~~~~~~~~~~~~~~~~ls-- 411 (538)
.|. .....++..++++|+++++|||.... +| .++|. ..++.. . .....++++
T Consensus 285 -----~~~---~~g~~~v~~l~~~GV~v~lGtD~~~~----------~~--~~~~~~~~~e~~-~----~~~~~~~~~~~ 339 (426)
T PRK07572 285 -----YPK---RRGMTRVPELMAAGINVAFGHDCVMD----------PW--YSLGSGDMLEVA-H----MGLHVAQMTGQ 339 (426)
T ss_pred -----CCC---CCCCcCHHHHHHCCCcEEEecCCCCC----------CC--CCCCCCCHHHHH-H----HHHHHHcCCCH
Confidence 000 01123488999999999999996411 11 11111 111111 1 111122233
Q ss_pred --HHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcC-CCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEE
Q 009282 412 --VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP-NSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 488 (538)
Q Consensus 412 --~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V 488 (538)
+.++|+++|.|||++||+++ .| |++||.||||++|. ++...+. ...++..||++|++|
T Consensus 340 ~~l~~~l~~aT~~~A~~lgl~~-~g-i~~G~~ADlvl~d~~~p~e~i~-----------------~~~~~~~V~~~G~~v 400 (426)
T PRK07572 340 DAMRACFDAVTVNPARIMGLEG-YG-LEPGCNADLVLLQARDPIEAIR-----------------LRAARLAVIRRGKVI 400 (426)
T ss_pred HHHHHHHHHhhcchHHhhCCCC-cC-CCCCCcCCEEEEeCCCHHHHHH-----------------hcCCceEEEECCEEE
Confidence 35667799999999999965 67 99999999999994 5443321 135789999999999
Q ss_pred EECC
Q 009282 489 WEND 492 (538)
Q Consensus 489 ~~~~ 492 (538)
++..
T Consensus 401 ~~~~ 404 (426)
T PRK07572 401 ARTP 404 (426)
T ss_pred eccC
Confidence 8873
|
|
| >TIGR01792 urease_alph urease, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=275.93 Aligned_cols=348 Identities=17% Similarity=0.164 Sum_probs=211.5
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC----------CCCceEEecCCCeeeccccccccccccccCCC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~----------~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~ 121 (538)
.++++|+|++|+|..+...++|+|+||||++|++.... ..++++||++|++|+|||||+|+|+..+ +
T Consensus 65 ~MDlVIkNg~VID~~gi~kaDI~IkDGrIaaIG~~~~p~~~~~v~~~~~~~tEVIDa~GkIV~PGlIDtHvH~~~P--~- 141 (567)
T TIGR01792 65 VLDLVITNALILDWTGIYKADIGIKNGRIVGIGKAGNPDTMDGVDMIVGASTEAISGEGKIVTAGGIDTHVHYISP--Q- 141 (567)
T ss_pred cCcEEEECeEEECCCCeEEEEEEEECCEEEEEcCCCcccccccccccCCCCCeEEECCCCEEEECeEEeecCCCCc--c-
Confidence 56899999999997666789999999999999874321 1357899999999999999999998544 1
Q ss_pred CChhhHHHHHHHHHhCCcEEEecccCCC-----CC---CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHHH
Q 009282 122 ETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (538)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTt~~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (538)
..+.++..||||+++++... .. ...-......+......+++++.... ..+...++.++.
T Consensus 142 --------~~~aAl~gGVTTmI~~Gtgp~~~t~pTt~t~~~~~~~~~l~aa~~~~in~g~~g~g---~~~~~~~L~e~i- 209 (567)
T TIGR01792 142 --------QVQAALDNGITTLIGGGTGPADGTNATTCTPGPWYLHRMLQAADGLPINFGFTGKG---SGSGPAALIEQI- 209 (567)
T ss_pred --------HHHHHHhCceEEEecCCCccccCCCCcccccchhhHHHHHHHhccCCccEEEEeCC---ccchHHHHHHHH-
Confidence 15788999999999864311 00 11111122223333455666665322 122345566666
Q ss_pred HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh---HHHHHHHHHHcCCCCcccccccCCchHHHH
Q 009282 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQKRMIELGITGPEGHALSRPPLLEGE 270 (538)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 270 (538)
+.|+.++|.+.. +..+++.+.++++.|+++|.++++|+++..+ ++..++ +.|.
T Consensus 210 ~aGa~gfK~h~~----y~~s~e~L~~al~~A~e~gv~V~iH~ET~~E~g~ve~t~~---a~g~----------------- 265 (567)
T TIGR01792 210 EAGACGLKVHED----WGATPAAIDNALSVADEYDVQVAVHTDTLNESGFVEDTIA---AFKG----------------- 265 (567)
T ss_pred HcCCcEEEeCCC----CCCCHHHHHHHHHHHHHcCCEEEEeCCCcccchHHHHHHH---HHCC-----------------
Confidence 578888886543 4578999999999999999999999977665 333322 2222
Q ss_pred HHHHHHHHHHHcCCCEEEEecc---CHHHHHHHHHHHHcCC-cEEEeccccc---------------cccCcccccCCCc
Q 009282 271 ATTRAIRLAEFVNTPLYVVHVM---SMDAMEEIAKARKAGQ-RVIGEPVVSG---------------LVLDDSWLWHSDF 331 (538)
Q Consensus 271 ~i~~~l~~~~~~~~~~~~~h~~---~~~~~~~i~~~~~~g~-~v~~~~~~~~---------------~~~~~~~~~~~~~ 331 (538)
.+++..|.. .....+.++.....++ +-+.+|+..+ .++++..-++..|
T Consensus 266 -------------rpIh~~H~~G~g~ghapdi~~~~~~~~~~~~st~pt~p~~~~~~~e~~~m~~~~h~l~~~~~~d~~~ 332 (567)
T TIGR01792 266 -------------RTIHTYHTEGAGGGHAPDIIVVVGYNNILPSSTNPTLPYTVNTIDEHLDMLMVCHHLNPKIPEDVAF 332 (567)
T ss_pred -------------CcchhHhhcCCCCCcHHHHHHHcCCCCcccCCCCCCCCCccCchhhhcCeEEEeccCCCCCcccchh
Confidence 222333322 2222133332222221 1111111111 0122222221122
Q ss_pred ccccceeecCCCCCcccHHHHH-HHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCC
Q 009282 332 VTAAKYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410 (538)
Q Consensus 332 ~~~~~~~~~p~~r~~~~~~~l~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~l 410 (538)
.. .|.+.+..+.. -+.+.|+...++||+.+...-.. ... ++-....++....|.
T Consensus 333 a~---------~r~r~~t~~ae~~l~d~G~~~~~~sDs~~mgr~~~-----~~~-----------r~~q~a~k~~~~~g~ 387 (567)
T TIGR01792 333 AE---------SRIRKETIAAEDVLQDMGAISMISSDSQAMGRIGE-----VVT-----------RCWQTADKMKKQRGP 387 (567)
T ss_pred hh---------hhccceeccccchhhhCCcEEEecCCchhhCcccc-----eee-----------chHHHHHHHHHhcCC
Confidence 11 11112222222 36677999999999864422211 011 111111122221111
Q ss_pred C--------HHHH---HHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEE
Q 009282 411 S--------VTDY---VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVE 479 (538)
Q Consensus 411 s--------~~ea---l~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 479 (538)
- .+.+ |++.|.|||+++|+++.+|+|++||.||||||+++.+ ..++.
T Consensus 388 ~~~~~~~~~~~rl~r~L~~yT~n~A~a~g~~~~~GsLe~Gk~ADlVv~~~d~f----------------------~~~p~ 445 (567)
T TIGR01792 388 LPGDSPGNDNNRVKRYVAKYTINPAITHGISDYIGSIEVGKLADLVLWEPAFF----------------------GVKPD 445 (567)
T ss_pred CcccccCChhhhHHHHHHHHhHHHHHHcCcccCceeeCCCCccCEEEEcCccc----------------------CCChh
Confidence 1 1111 9999999999999999999999999999999998754 23577
Q ss_pred EEEECCEEEEEC-CeeeccC
Q 009282 480 VTIAGGRVVWEN-DELNVVP 498 (538)
Q Consensus 480 ~V~v~G~~V~~~-~~~~~~~ 498 (538)
.||++|+++|.. |++....
T Consensus 446 ~v~~~G~i~~~~~Gd~~as~ 465 (567)
T TIGR01792 446 MVLKGGLIAWAIMGDPNASI 465 (567)
T ss_pred eEEECCEEEEEeCCCccccC
Confidence 999999999987 7776654
|
This model describes the urease alpha subunit UreC (designated beta or B chain, UreB in Helicobacter species). Accessory proteins for incorporation of the nickel cofactor are usually found in addition to the urease alpha, beta, and gamma subunits. The trusted cutoff is set above the scores of many reported fragments and of a putative second urease alpha chain in Streptomyces coelicolor. |
| >PRK05985 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=270.55 Aligned_cols=349 Identities=16% Similarity=0.141 Sum_probs=210.2
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCC----------
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE---------- 122 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~---------- 122 (538)
.+++|+|++|+++. ..+|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+........
T Consensus 2 ~~~~i~~~~i~~~~---~~~v~i~~g~i~~i~~~~~~~~~~~~id~~g~~v~Pg~iD~h~h~~~~~~~~~~~~~~~~~~~ 78 (391)
T PRK05985 2 TDLLFRNVRPAGGA---AVDILIRDGRIAAIGPALAAPPGAEVEDGGGALALPGLVDGHIHLDKTFWGDPWYPNEPGPSL 78 (391)
T ss_pred CCEEEECcEECCCC---eeEEEEECCEEEEecCCCCCCCCCcEEECCCCEEecceEeeEEccCccccCCccccCCCCCCH
Confidence 46899999999975 56999999999999987554445789999999999999999999965311110
Q ss_pred -------------ChhhH----HHHHHHHHhCCcEEEecccCCCCC----CHHHHHHHHHHHhcccceeeeeeeeeec-C
Q 009282 123 -------------TIDDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDYGFHMAITK-W 180 (538)
Q Consensus 123 -------------~~~~~----~~~~~~~l~~GvTt~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 180 (538)
+.+++ ...+..++++|+|+++++...... ......+...........++........ .
T Consensus 79 ~~~i~~~~~~~~~~~~~~~~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~ 158 (391)
T PRK05985 79 RERIANERRRRAASGHPAAERALALARAAAAAGTTAMRSHVDVDPDAGLRHLEAVLAARETLRGLIDIQIVAFPQSGVLS 158 (391)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHhcCcceEEeeEccCCCcccchHHHHHHHHHHhhCcccEEEEeccCccccC
Confidence 00011 122456789999999987643221 1222222221111122222211111111 1
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccc
Q 009282 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (538)
.....+.+++.. +.|.+.+.. ..++.....+.+.+.++++.|+++|+++.+|+.......
T Consensus 159 ~~~~~~ll~~~l-~~g~~~~gg-~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~------------------ 218 (391)
T PRK05985 159 RPGTAELLDAAL-RAGADVVGG-LDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELG------------------ 218 (391)
T ss_pred CcCHHHHHHHHH-HcCCCEEeC-CCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCcc------------------
Confidence 111223344444 456553322 233334455679999999999999999999984432100
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCC--CEEEEeccCHH------HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcc
Q 009282 261 LSRPPLLEGEATTRAIRLAEFVNT--PLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (538)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~h~~~~~------~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
...+.++++.....+. ++.+.|+.... ..+.++++++.|+.|+.++..
T Consensus 219 --------~~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g~~v~~~~~~---------------- 274 (391)
T PRK05985 219 --------AFQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAGVAIMTNAPG---------------- 274 (391)
T ss_pred --------HHHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcCCeEEEeCCC----------------
Confidence 0112223333333443 47888886532 125678899999988765221
Q ss_pred cccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhh-hHHHHHHHhhhcCCCC
Q 009282 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE-RMHLVWDTMVESGQIS 411 (538)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~-~~~~~~~~~~~~~~ls 411 (538)
+.++ .+++.+++.|+++++|||+...+.. |+. ....++. .+...... .. ..-+
T Consensus 275 -~~~~------------~~~~~l~~~Gv~v~lGtD~~~~~~~-------p~~----~~~~~~~~~~~~~~~~-~~-~~~~ 328 (391)
T PRK05985 275 -SVPV------------PPVAALRAAGVTVFGGNDGIRDTWW-------PYG----NGDMLERAMLIGYRSG-FR-TDDE 328 (391)
T ss_pred -CCCC------------CCHHHHHHCCCeEEEecCCCCCCCc-------CCC----CCcHHHHHHHHHHHHc-cC-ChHH
Confidence 0111 2389999999999999996432111 111 0111111 11111111 11 1124
Q ss_pred HHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 412 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 412 ~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
+.++|+++|.|||+++|+++ ++|++||.||||++|.+++.... .. ...+..||++|++||++
T Consensus 329 ~~~al~~~T~~~A~~lg~~~--~~l~~G~~ADlvvld~~~~~~~~------------~~----~~~~~~v~~~G~~v~~~ 390 (391)
T PRK05985 329 LAAALDCVTHGGARALGLED--YGLAVGARADFVLVDAETVAEAV------------VA----VPVRRLVVRGGRIVARD 390 (391)
T ss_pred HHHHHHHHcchhHHHhCCcc--cCCCCCCcCCEEEECCCCHHHHH------------hh----CCcceEEEECCEEEecC
Confidence 67999999999999999954 45999999999999988653321 11 23467799999999997
Q ss_pred C
Q 009282 492 D 492 (538)
Q Consensus 492 ~ 492 (538)
|
T Consensus 391 ~ 391 (391)
T PRK05985 391 G 391 (391)
T ss_pred C
Confidence 5
|
|
| >PRK09230 cytosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=271.28 Aligned_cols=360 Identities=20% Similarity=0.224 Sum_probs=213.9
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC-CCCceEEecCCCeeeccccccccccccccCCC----------
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---------- 121 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~-~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~---------- 121 (538)
..++|+|++|+++.. ..+|+|+||+|++|++.... ..+.++||++|++|+|||||+|+|+...+...
T Consensus 4 ~~~li~~~~~~~~~~--~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~PGlid~H~H~~~~~~~~~~~~~~~~~l 81 (426)
T PRK09230 4 ALMTIKNARLPGKEG--LWQITIEDGKISAIEPQSEASLEAGEVLDAEGGLAIPPFIEPHIHLDTTQTAGEPNWNQSGTL 81 (426)
T ss_pred ceEEEECcEEcCCCe--eEEEEEECCEEEEecCCCCCCCCCCceEeCCCCEeccceeEEEEccccceecCCCccCCCCCH
Confidence 458999999987543 46999999999999986432 23568999999999999999999998652111
Q ss_pred -------------CChhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc--ccceeeeeee--eee-c
Q 009282 122 -------------ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK--NSCMDYGFHM--AIT-K 179 (538)
Q Consensus 122 -------------~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~-~ 179 (538)
.++++++ ..+..++++|||+++++..+... ....++...+... ......++.. ... .
T Consensus 82 ~~~i~~~~~~~~~~t~ed~~~~a~~~~~e~l~~GvTtvr~~~d~~~~-~~~~~~a~~~~~~~~~~~~~~~i~a~~~~~~~ 160 (426)
T PRK09230 82 FEGIERWAERKALLTHEDVKQRAWQTLKWQIANGIQHVRTHVDVSDP-TLTALKAMLEVKEEVAPWVDLQIVAFPQEGIL 160 (426)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCcccEEeccccCCc-chhHHHHHHHHHHHhhCcceEEEEeccCcccc
Confidence 1222322 23445688999999988654222 1122222211111 1112222111 100 0
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc--CCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCCCc
Q 009282 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM--INDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGP 256 (538)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~--~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~~~ 256 (538)
........+.... +.+.+.+.. .++.... .+.+.+..+++.|+++|+++++|+.+. .......
T Consensus 161 ~~~~~~~~l~~a~-~~~~~~vg~--~p~~~~~~~~~~e~l~~~~~~A~~~g~~~~~H~~E~~~~~~~~~----------- 226 (426)
T PRK09230 161 SYPNGEALLEEAL-RLGADVVGA--IPHFEFTREYGVESLHKAFALAQKYDRLIDVHCDEIDDEQSRFV----------- 226 (426)
T ss_pred CCccHHHHHHHHH-HcCCCEEeC--CCCccccchhHHHHHHHHHHHHHHhCCCcEEEECCCCCcchHHH-----------
Confidence 1112223333333 334443321 1111112 247889999999999999999999543 2111101
Q ss_pred ccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHH------HHHHHHHHHHcCCcEEEeccccccccCcccccCCC
Q 009282 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (538)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~------~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (538)
..+.+.+.... .+.++.+.||.+.. ..+.++.+++.|+.|++||.+......
T Consensus 227 -------------~~~~~~~~~~g-l~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~vv~cP~sn~~l~~-------- 284 (426)
T PRK09230 227 -------------ETVAALAHREG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQG-------- 284 (426)
T ss_pred -------------HHHHHHHHHhC-CCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeEEECcchhhhhcC--------
Confidence 11112222222 45688999999883 347899999999999999986322110
Q ss_pred cccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcC-C
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESG-Q 409 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~-~ 409 (538)
.....| . .....++++++++|+++++|||+.. ++|. +.|...+-..+.... ..... .
T Consensus 285 -----~~~~~p-~--~~g~~pi~~l~~aGv~V~lGTD~~~----------d~~~--~~~~~d~~~~~~~~~--~~~~~~~ 342 (426)
T PRK09230 285 -----RFDTYP-K--RRGITRVKEMLEAGINVCFGHDDVF----------DPWY--PLGTANMLQVLHMGL--HVCQLMG 342 (426)
T ss_pred -----CCCCCC-C--CCCCcCHHHHHHCCCeEEEecCCCC----------CCCc--CCCCCCHHHHHHHHH--HHHhhCC
Confidence 000000 0 0112338899999999999999642 1221 112111111111111 01111 1
Q ss_pred C-CHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEE
Q 009282 410 I-SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 488 (538)
Q Consensus 410 l-s~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V 488 (538)
. ++.++|+|+|.|||++||+++ .| |++||.||||++|.+.+..+. +. ...+..|+++|++|
T Consensus 343 ~~~~~~~l~maT~~gA~alg~~~-~g-le~G~~ADlv~~~~~~~~~~~------------~~----~~~~~~v~~~G~~v 404 (426)
T PRK09230 343 YGQINDGLNLITTHSARTLNLQD-YG-IEVGNPANLIILPAENGFDAV------------RR----QVPVRYSIRHGKVI 404 (426)
T ss_pred hhhHHHHHHHHhcchhHHhCCCC-cC-CCCCCcCCEEEEeCCCHHHHH------------hc----cCCceEEEECCEEE
Confidence 1 367999999999999999965 77 999999999999965442221 11 34689999999999
Q ss_pred EEC
Q 009282 489 WEN 491 (538)
Q Consensus 489 ~~~ 491 (538)
++.
T Consensus 405 ~~~ 407 (426)
T PRK09230 405 AET 407 (426)
T ss_pred ecc
Confidence 976
|
|
| >PRK10027 cryptic adenine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-30 Score=270.79 Aligned_cols=328 Identities=18% Similarity=0.173 Sum_probs=225.4
Q ss_pred cccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
+.+++|+|++|+++.. ...++|+|+||+|++|++......+.++||++|++|+|||||+|+|+..+ . .+++.+
T Consensus 29 ~~dllI~ng~vv~~~~~~~~~~~V~I~~GrI~~Vg~~~~~~~~~~vIDa~G~~v~PGlIDaHvHiess--~-~~p~~~-- 103 (588)
T PRK10027 29 VADYIIDNVSILDLINGGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESS--M-MTPVTF-- 103 (588)
T ss_pred CCCEEEECcEEEeCCCCcEEeeEEEEECCEEEEeCCCCCCCCCCeEEECCCCEEEECeEeccccCCcc--c-CCHhHH--
Confidence 6789999999998643 35679999999999997653322346899999999999999999999876 2 356666
Q ss_pred HHHHHHhCCcEEEecccCCCC-CCHHHHHHHHHHHhcccceeeeeeee----eec-CC--h--hhHHHHHHHHHHcCCcE
Q 009282 130 GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGFHMA----ITK-WD--E--VVSDEMEVMVKEKGINS 199 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~--~--~~~~~~~~~~~~~g~~~ 199 (538)
.+.++.+||||++++..... ....+.++...+.........++..+ ... ++ + -..++++++.++.++-+
T Consensus 104 -a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps~vpa~~~~Et~Ga~~~~~~~~~~l~~~~v~g 182 (588)
T PRK10027 104 -ETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTG 182 (588)
T ss_pred -HHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecccCcCCcccccCCCcCCHHHHHHHhcCCCcee
Confidence 45689999999998643322 24556666666665554454443321 111 11 1 14567788777788889
Q ss_pred EEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHH
Q 009282 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (538)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~ 279 (538)
+...++|++....+++.+.++... .++.+.+|+..... ..+..+...|+.+
T Consensus 183 lgEvMn~~~V~~~d~~~~~ki~~~---~~~~idGH~p~l~g--~~L~ay~aaGi~s------------------------ 233 (588)
T PRK10027 183 LAEMMDYPGVISGQNALLDKLDAF---RHLTLDGHCPGLGG--KELNAYIAAGIEN------------------------ 233 (588)
T ss_pred EEeccCccccccCCHHHHHHHHHh---CCCceECCCCCCCh--HHHHHHHHcCCCC------------------------
Confidence 999999998887788888888744 89999999986643 4455556667643
Q ss_pred HHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc-
Q 009282 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT- 358 (538)
Q Consensus 280 ~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~- 358 (538)
.|.+...+ +.++++ +.|..+...-. +..+ +.+.+..++..
T Consensus 234 ---------DHE~~t~e-ea~ekl-r~Gm~v~iReg-------------------S~~~---------nl~~l~~~~~~~ 274 (588)
T PRK10027 234 ---------CHESYQLE-EGRRKL-QLGMSLMIREG-------------------SAAR---------NLNALAPLINEF 274 (588)
T ss_pred ---------CcccCCHH-HHHHHH-HCCCEEEEeCC-------------------cccc---------CHHHHHHHhhcc
Confidence 33333322 444444 46766643221 1111 11222222221
Q ss_pred -CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccc
Q 009282 359 -GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAIL 437 (538)
Q Consensus 359 -Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~ 437 (538)
--.++++||......-.+ +..+...++++++..|+++++|++|+|.|||+++|++ ++|+|+
T Consensus 275 ~~~~~~l~TDd~~~~~l~~-----------------~Ghi~~~vr~av~~~Gi~~~~Ai~mAT~nPA~~lgl~-d~G~Ia 336 (588)
T PRK10027 275 NSPQCMLCTDDRNPWEIAH-----------------EGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLN-HLGLLA 336 (588)
T ss_pred CCCeEEEEcCCCChHHHHh-----------------ccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC-CCcccC
Confidence 136799999753321111 2245666777787677999999999999999999995 589999
Q ss_pred cCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeee
Q 009282 438 VGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495 (538)
Q Consensus 438 ~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~ 495 (538)
||+.|||+++|... ..++..||++|++|+++ +.+
T Consensus 337 pG~~ADlvvld~l~-----------------------~~~v~~v~~~G~~v~~~-~~~ 370 (588)
T PRK10027 337 PGKQADIVLLSDAR-----------------------KVTVQQVLVKGEPIDAQ-TLQ 370 (588)
T ss_pred CCCcCCEEEEccCC-----------------------CceEEEEEECCEEeecc-ccc
Confidence 99999999998421 13689999999999998 655
|
|
| >TIGR01178 ade adenine deaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=270.00 Aligned_cols=324 Identities=19% Similarity=0.238 Sum_probs=221.8
Q ss_pred cEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 54 KILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 54 ~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
+++|+|++|+++.+ ...++|+|+||||++|++.. +.++||++|++|+|||||+|+|+..+ . .+++.+ .
T Consensus 1 dlli~n~~ivd~~~~~~~~~dI~I~~g~I~~ig~~~----~~~viDa~G~~v~PG~ID~H~Hi~~~--~-~~~~~~---~ 70 (552)
T TIGR01178 1 DIVIKNAKIIDVYNGEIIPGDIAIANGHIAGVGKYN----GVKVIDALGEYAVPGFIDAHIHIESS--M-LTPSEF---A 70 (552)
T ss_pred CEEEEeeEEEeCCCCcEEeeeEEEECCEEEEecCCC----CCeEEECCCCEEEeCeEecccccCCC--C-CChhHH---H
Confidence 47899999998654 35789999999999998742 46899999999999999999999876 2 244444 4
Q ss_pred HHHHhCCcEEEecccCCC-CCCHHHHHHHHHHHhcccceeeeeeeee--e----cCChh--hHHHHHHHHHHcCCcEEEE
Q 009282 132 AAALAGGTTMHIDFVIPI-NGSLTAGFEAYEKKAKNSCMDYGFHMAI--T----KWDEV--VSDEMEVMVKEKGINSFKF 202 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~--~~~~~~~~~~~~g~~~ik~ 202 (538)
+.++.+||||++++.... .....+.++...+.....++++.+..+. + ..++. ..++++++.++.|+.++|.
T Consensus 71 ~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~~s~vp~~~~e~~g~~~~~~~i~~~~~~~~V~glke 150 (552)
T TIGR01178 71 KLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFMLPSCVPALQFETSGAVLTAEDIDELMELDEVLGLAE 150 (552)
T ss_pred HHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEECCCCCCCCcccCCCCccCHHHHHHHHcCCCccEEEE
Confidence 668999999999874332 2245677777666665666666444331 1 11222 3667888886679999999
Q ss_pred EeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHc
Q 009282 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282 (538)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 282 (538)
+++|++....+.+.++ .++.+++.|..+.+|++... ...+..+.+.|..
T Consensus 151 ~m~~~~v~~~d~~~l~-~i~~a~~~g~~I~gHap~l~--~~eL~~~~~aGi~---------------------------- 199 (552)
T TIGR01178 151 VMDYPGVINADIEMLN-KINSARKRNKVIDGHCPGLS--GKLLNKYISAGIS---------------------------- 199 (552)
T ss_pred EecchhhcCCCHHHHH-HHHHHHhCCCEEEecCCCCC--HHHHHHHHHcCCC----------------------------
Confidence 9998764444455554 44889999999999998543 2344444455543
Q ss_pred CCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHH--hcCC
Q 009282 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAAL--ATGI 360 (538)
Q Consensus 283 ~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l--~~Gv 360 (538)
..|+.... ++...-.+.|..+...-.+ .. .+...+..+. ..+.
T Consensus 200 -----~dHe~~s~--~ea~e~~~~Gm~~~ir~gs-------------------~~---------~n~~~~~~~~~~~~~~ 244 (552)
T TIGR01178 200 -----NDHESTSI--EEAREKLRLGMKLMIREGS-------------------AA---------KNLEALHPLINEKNCR 244 (552)
T ss_pred -----CCcCcCCH--HHHHHHHHCCCEEEEeCCc-------------------cc---------cCHHHHHHHHhhcCCc
Confidence 45654433 4444455678766432111 10 0111222222 3568
Q ss_pred ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCC
Q 009282 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 440 (538)
Q Consensus 361 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk 440 (538)
+++++||.... .. .+. +..+...+++++.. ++++++||+|+|.|||+++|++ ++|+|++|+
T Consensus 245 ~~~l~TD~~~~-~~-------~~~---------~g~l~~~v~~ai~~-g~~~~~Al~maT~npA~~lgl~-~~G~I~pG~ 305 (552)
T TIGR01178 245 SLMLCTDDRHV-ND-------ILN---------EGHINHIVRRAIEH-GVDPFDALQMASINPAEHFGID-VGGLIAPGD 305 (552)
T ss_pred eEEEEeCCCCh-hH-------HHh---------cCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCC-CCcccCCCC
Confidence 99999994211 11 010 22455556566665 4999999999999999999995 589999999
Q ss_pred CccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC-----Ceee
Q 009282 441 DADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN-----DELN 495 (538)
Q Consensus 441 ~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~-----~~~~ 495 (538)
.||||+++... ..++..||++|++|.++ |+.+
T Consensus 306 ~ADlvvl~~l~-----------------------~~~v~~v~~~G~~v~~~~~~~~g~~~ 342 (552)
T TIGR01178 306 PADFVILKDLR-----------------------NFKVNKTYVKGKLLDLNEVFNDEISR 342 (552)
T ss_pred cCCEEEECCCC-----------------------CceEEEEEECCEEEcccccccCCccc
Confidence 99999998311 23789999999999997 7755
|
The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. |
| >TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=263.92 Aligned_cols=356 Identities=21% Similarity=0.236 Sum_probs=240.3
Q ss_pred cccEEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccccccccccccc-CCCCChhhHHH
Q 009282 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFS 129 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~-~~~~~~~~~~~ 129 (538)
.++++|+|++|++++.. .+++|+|+||||++|++..+.+++.++||++|++|+|||||+|+|..... ....+.+.+..
T Consensus 2 ~~~~~i~n~~i~~~~~~~~~~~i~V~dGkI~~I~~~~~~~~~~~viD~~G~~i~PGfID~HvHg~~g~~~~~~~~e~~~~ 81 (380)
T TIGR00221 2 AESYLLKDIAIVTGNEVIDNGAVGINDGKISTVSTEAELEPEIKEIDLPGNVLTPGFIDIHIHGCGGVDTNDASFETLEI 81 (380)
T ss_pred CceEEEEeeEEECCCCEEeccEEEEECCEEEEEcccccCCCCCeEEECCCCEEccceeeeeeccccCcCCCCCCHHHHHH
Confidence 34689999999998765 46899999999999987654444568999999999999999999986531 11235688889
Q ss_pred HHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh--cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeee
Q 009282 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA--KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (538)
..+.+++.|||+++++...... ...+.++.+.+.. ......+|+|...+..+.+ ..|+..-...
T Consensus 82 ~~~~~~~~GvTt~l~t~~t~~~~~~~~~l~~~~~~~~~~~~a~~lG~HlEGPfi~~~----------~~Gah~~~~i--- 148 (380)
T TIGR00221 82 MSERLPKSGCTSFLPTLITQPDENIKQAVKNMREYLAKEKNAQALGLHLEGPFLSPE----------KKGAHPPEYI--- 148 (380)
T ss_pred HHHHHHhcCeeEEeeeccCCCHHHHHHHHHHHHHHHhccCCceeeeEeeecCcCChh----------hcCCCCHHHh---
Confidence 9999999999999988654443 4556666555533 2356778888888776642 3344332111
Q ss_pred CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCE
Q 009282 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (538)
Q Consensus 207 ~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 286 (538)
...+.++++++++.+. ..+.+++=+++.....+.++.+.+.|+..+.+|+.+.. +++.++++. |..
T Consensus 149 ---~~p~~~~~~~~~~~~~-~~i~~vTlAPE~~~~~~~i~~l~~~gi~vs~GHs~A~~-----~~~~~a~~~----Ga~- 214 (380)
T TIGR00221 149 ---REPDVELFKKFLCEAG-GVITKVTLAPEEDQHFELIRHLKDAGIIVSAGHTNATY-----ELAKAAFKA----GAT- 214 (380)
T ss_pred ---hCcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCCCCH-----HHHHHHHHc----CCC-
Confidence 2247788888887653 34566666666555668888888889988888885533 444555443 333
Q ss_pred EEEeccCHHH------HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc-C
Q 009282 287 YVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-G 359 (538)
Q Consensus 287 ~~~h~~~~~~------~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~-G 359 (538)
+++|+.+.-. .-.+...-.. -.+.++...+..++++.. ++.+.+. |
T Consensus 215 ~~THlfNaM~~~~hR~pg~vga~l~~-~~~~~elI~Dg~Hv~p~~--------------------------~~~~~r~kg 267 (380)
T TIGR00221 215 HATHLYNAMSPIHHREPGVIGAVLDH-DDVYTEIIADGIHIHPLN--------------------------IRLAKKLKG 267 (380)
T ss_pred eeeeeccCCCCcCCCCCcHHHHHhcC-CCcEEEEEcCCCcCCHHH--------------------------HHHHHHhcC
Confidence 4666655211 0111111111 134556665555554432 3333332 4
Q ss_pred C-ceEEeCCCCCCCh---hhhhcCc------cCcccCCCC-CcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 360 I-LQLVGTDHCAFNS---TQKAFGI------DDFRKIPNG-VNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 360 v-~~~lgtD~~~~~~---~~~~~~~------~~~~~~~~g-~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
. ++.+-||.....- ....++. +.......| ++|....+...++++++.++++++++++++|.|||+++|
T Consensus 268 ~~~~~lvtDa~~~~g~~~G~y~l~~~~v~~~~g~~~~~~g~LAGs~ltl~~~v~~l~~~~~~~~~eal~~aT~npA~~lg 347 (380)
T TIGR00221 268 DSKLCLVTDSMAAAGAKDGVFIFGGKTVYIREGTCLDSNGTLAGSSLTMIEGARNLVEFTNISLTDAARMSSLNPARALG 347 (380)
T ss_pred CCcEEEEeccccccCCCCceEeECCEEEEEECCEEEcCCCceechhhhHHHHHHHHHHhhCCCHHHHHHHHhHHHHHHhC
Confidence 3 6788888543221 1111111 112222334 778788888888888888889999999999999999999
Q ss_pred CCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCE
Q 009282 429 VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGR 486 (538)
Q Consensus 429 ~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~ 486 (538)
+++++|+|++|+.|||+|+|.+ .+|+.||++|+
T Consensus 348 l~~~~G~i~~G~~ADlvv~d~~-------------------------~~v~~t~~~G~ 380 (380)
T TIGR00221 348 IDDRLGSVTVGKDANLVVFTPD-------------------------FEVILTIVNGN 380 (380)
T ss_pred CCCCCcccCCCCcCCEEEECCC-------------------------CCEEEEEeCCC
Confidence 9766899999999999999965 36899999984
|
|
| >cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=268.95 Aligned_cols=343 Identities=15% Similarity=0.080 Sum_probs=210.1
Q ss_pred CEEEEecCCCCC---CCCceEEecCCCeeeccccccccccccccC-CC-------------------CChhhHHH----H
Q 009282 78 GIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS-------------------ETIDDFFS----G 130 (538)
Q Consensus 78 grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~-------------------~~~~~~~~----~ 130 (538)
|+|++||+.... .++.++||+.|++|+|||||+|+|+++... +. .++++.+. +
T Consensus 1 ~~I~aVG~~~~~~~~~~~~~v~d~~g~~v~PGlVnaH~H~~~~~~rg~~~~~~~~~wl~~~~~~~~~~~~e~~~~~a~~~ 80 (381)
T cd01312 1 DKILEVGDYEKLEKRYPGAKHEFFPNGVLLPGLINAHTHLEFSANVAQFTYGRFRAWLLSVINSRDELLKQPWEEAIRQG 80 (381)
T ss_pred CeEEEECChHHHHhhcCCCeEEecCCcEEecCccccccccchhccccccCCCchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 699999985322 235789999999999999999999977622 10 12222221 2
Q ss_pred HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeec-CChhhHHHHHHHHH--HcCCcEEEEEeeeC
Q 009282 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVSDEMEVMVK--EKGINSFKFFMAYK 207 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~g~~~ik~~~~~~ 207 (538)
...++++||||+.|+... ....++..+.+.+..+.+.+...... ......+......+ ....+.++..+.++
T Consensus 81 ~~E~l~~G~Tt~~d~~~~-----~~~~~a~~~~GiR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~ 155 (381)
T cd01312 81 IRQMLESGTTSIGAISSD-----GSLLPALASSGLRGVFFNEVIGSNPSAIDFKGETFLERFKRSKSFESQLFIPAISPH 155 (381)
T ss_pred HHHHHHhCCeEEEEecCC-----HHHHHHHHHcCCcEEEEEeeECCCCchhhhhHHHHHHHHHHhhccCccceEEEECCC
Confidence 344588999999998643 12455555566555444433211111 11111111112211 11234577777888
Q ss_pred CCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHHH-------HHHcCCCCcccccccCCchHHHHHHHHHHHHH
Q 009282 208 GSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKR-------MIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (538)
Q Consensus 208 ~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~ 279 (538)
....++.+.++++.+.|+++|+++++|+. +..+.....+. +...+...... ...+ .+ +.+...
T Consensus 156 a~~~~s~e~l~~~~~lA~~~g~~i~~Hl~E~~~e~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~-------pv-~~l~~~ 226 (381)
T cd01312 156 APYSVHPELAQDLIDLAKKLNLPLSTHFLESKEEREWLEESKGWFKHFWESFLKLPKPK-KLAT-------AI-DFLDML 226 (381)
T ss_pred CCcccCHHHHHHHHHHHHHcCCeEEEEecCcHHHHHHHHHhccchhhHhhhhccccccc-CCCC-------HH-HHHHHc
Confidence 88888999999999999999999999994 44443322211 00110000000 0001 11 122333
Q ss_pred HHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcC
Q 009282 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (538)
Q Consensus 280 ~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G 359 (538)
..++.++.+.|+...++ ++++++++.|+.+++||.. ++..+.+. .++..+++.|
T Consensus 227 g~L~~~~~~~H~~~l~~-~~~~~l~~~g~~v~~~P~s-------------n~~lg~g~------------~p~~~~~~~G 280 (381)
T cd01312 227 GGLGTRVSFVHCVYANL-EEAEILASRGASIALCPRS-------------NRLLNGGK------------LDVSELKKAG 280 (381)
T ss_pred CCCCCCcEEEECCcCCH-HHHHHHHHcCCeEEECcch-------------hhhhcCCC------------cCHHHHHHCC
Confidence 45677899999999887 8899999999999999875 22222221 2288999999
Q ss_pred CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccC
Q 009282 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 439 (538)
Q Consensus 360 v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~G 439 (538)
+++++|||+...+....+ +. ++.......+.. ...+++.++|+|+|.|+|+++|++ .|+|++|
T Consensus 281 v~v~lGtD~~~~~~~~d~-----~~---------~~~~~~~~~~~~-~~~~~~~~~l~~aT~~gA~alg~~--~Gsle~G 343 (381)
T cd01312 281 IPVSLGTDGLSSNISLSL-----LD---------ELRALLDLHPEE-DLLELASELLLMATLGGARALGLN--NGEIEAG 343 (381)
T ss_pred CcEEEeCCCCccCCCCCH-----HH---------HHHHHHHhcccc-cccCCHHHHHHHHHHHHHHHhCCC--CCccCCC
Confidence 999999997543322111 11 122211111111 112688999999999999999994 8999999
Q ss_pred CCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCE
Q 009282 440 SDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGR 486 (538)
Q Consensus 440 k~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~ 486 (538)
|+||||++|.+.+. .+. .+.. ...+. ...|..|||+|+
T Consensus 344 k~ADlvv~d~~~~~-~~~---~~~~-~~~~~----~~~v~~v~v~G~ 381 (381)
T cd01312 344 KRADFAVFELPGPG-IKE---QAPL-QFILH----AKEVRHLFISGK 381 (381)
T ss_pred CcccEEEEeCCCcC-CCC---ccHH-HHHHc----cCCCCEEEecCC
Confidence 99999999987651 111 1111 11122 358999999996
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK09237 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=261.57 Aligned_cols=351 Identities=21% Similarity=0.223 Sum_probs=212.7
Q ss_pred EEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHH
Q 009282 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (538)
Q Consensus 55 ~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~ 132 (538)
++|+|++|+++.. ....+|+|+||||++|++..+.+.+.++||++|++|+|||||+|+|+... +... +. ...+
T Consensus 1 ~~i~~~~v~d~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~iD~~g~~v~PG~iD~H~H~~~~--~~~~-~~--~~~~ 75 (380)
T PRK09237 1 LLLRGGRVIDPANGIDGVIDIAIEDGKIAAVAGDIDGSQAKKVIDLSGLYVSPGWIDLHVHVYPG--STPY-GD--EPDE 75 (380)
T ss_pred CEEEeEEEECCCCCcccceEEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEEeeecCCCC--CCcc-CC--CHHH
Confidence 3799999998764 35689999999999998865444467899999999999999999999854 2111 11 3357
Q ss_pred HHHhCCcEEEecccCCCCCCHHHHHHHHHHH-hc--ccceeeeeeeeeec--C-C--hhhHHHHHHHHHH--cCCcEEEE
Q 009282 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AK--NSCMDYGFHMAITK--W-D--EVVSDEMEVMVKE--KGINSFKF 202 (538)
Q Consensus 133 ~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~--~-~--~~~~~~~~~~~~~--~g~~~ik~ 202 (538)
.++++||||++++............+...+. +. ..+.++.+...... . + .-..++++++..+ .+..++|.
T Consensus 76 ~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~glk~ 155 (380)
T PRK09237 76 VGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDELADLEDIDADAVAEAVKRNPDFIVGIKA 155 (380)
T ss_pred HHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccchhcCHhHCCHHHHHHHHHhCcCcEEEEEE
Confidence 7899999999998654433333333332322 11 12333333322111 1 1 1134556666542 46888898
Q ss_pred EeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHH
Q 009282 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281 (538)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 281 (538)
++.+........+.++.....+.+.|+++.+|+++... ..+.... ..
T Consensus 156 ~~~~~v~~~~~~~~~~~~~~~a~~~g~~v~~H~~~~~~~~~~l~~~-------------------------------l~- 203 (380)
T PRK09237 156 RMSSSVVGDNGIEPLELAKAIAAEANLPLMVHIGNPPPSLEEILEL-------------------------------LR- 203 (380)
T ss_pred EEecccccccCCchHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHhh-------------------------------cc-
Confidence 87764222211233444444556899999999965421 1111111 11
Q ss_pred cCCCEEEEeccCHHH----------HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHH
Q 009282 282 VNTPLYVVHVMSMDA----------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (538)
Q Consensus 282 ~~~~~~~~h~~~~~~----------~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (538)
.+ ..+.||..... .+.+....++|+.+...... ..+ ....
T Consensus 204 ~g--~~~~H~~~~~~~~~~~~~~~~~~~a~~~l~~G~~~~ig~g~------------------~~~----------~~~~ 253 (380)
T PRK09237 204 PG--DILTHCFNGKPNRILDEDGELRPSVLEALERGVRLDVGHGT------------------ASF----------SFKV 253 (380)
T ss_pred CC--CEEEecCCCCCCCccCCCCcchHHHHHHHHCCEEEEecCCC------------------Ccc----------cHHH
Confidence 01 13566654331 13555566677655422110 000 1133
Q ss_pred HHHHHhcCC-ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 352 LQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 352 l~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
...++++|+ +.+++||..+.+.. .+....+...++.+.. .+++++++++++|.|||+++|+
T Consensus 254 ~~~l~~~g~~~~~l~tD~~~~~~~----------------~~~~~~l~~~~~~~~~-~g~~~~~al~~aT~n~A~~lgl- 315 (380)
T PRK09237 254 AEAAIAAGILPDTISTDIYCRNRI----------------NGPVYSLATVMSKFLA-LGMPLEEVIAAVTKNAADALRL- 315 (380)
T ss_pred HHHHHHCCCCceEEECCCCCCCcc----------------cchHhHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCC-
Confidence 456778886 56999996543210 0001123344444444 4599999999999999999999
Q ss_pred CCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeec
Q 009282 431 PRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 496 (538)
Q Consensus 431 ~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~ 496 (538)
+++|+|++||.|||++++.+... .+ ..+......+.+. ...|+.||++|++||.+-..++
T Consensus 316 ~~~G~l~~G~~ADlvv~~~~~~~-~~---~~d~~~~~~~~~~--~~~~~~~~v~G~~~~~~~~~~~ 375 (380)
T PRK09237 316 PELGRLQVGSDADLTLFTLKDGP-FT---LTDSEGDSLIGER--LLTPLATVRGGKVVLTEQGSAE 375 (380)
T ss_pred CCCCcCCCCCcCCEEEEeCCCCC-cc---ccCCCCCEEEecC--CCcceEEEECCEEEEccCcccc
Confidence 67899999999999999965442 11 1222222333322 3589999999999998754443
|
|
| >cd01296 Imidazolone-5PH Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-31 Score=264.97 Aligned_cols=318 Identities=22% Similarity=0.236 Sum_probs=199.4
Q ss_pred EEEeCCEEEEecCCCCCC----CCceEEecCCCeeeccccccccccccccC----------CC-----------------
Q 009282 73 VYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS----------------- 121 (538)
Q Consensus 73 V~I~~grI~~Vg~~~~~~----~~~~vID~~G~~v~PGlID~H~H~~~~~~----------~~----------------- 121 (538)
|+|+||||++||+....+ .+.++||++|++|+|||||+|+|+..... +.
T Consensus 1 i~i~~g~I~~ig~~~~~~~~~~~~~~~iD~~G~~v~Pg~vn~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (371)
T cd01296 1 IAIRDGRIAAVGPAASLPAPGPAAAEEIDAGGRAVTPGLVDCHTHLVFAGDRVDEFAARLAGASYEEILAAGGGILSTVR 80 (371)
T ss_pred CEEECCEEEEEeCchhcccccCCCceEEECCCCEEecceeecCCCCcCCCCcHHHHHHHHCCCCHHHHHHcCCChHHHHH
Confidence 689999999999854432 35789999999999999999999976411 10
Q ss_pred ----CChhhHHH----HHHHHHhCCcEEEecccCCC-C-CCHHHHHHHHHHHhcccceee--eee--eeeec-C--Chhh
Q 009282 122 ----ETIDDFFS----GQAAALAGGTTMHIDFVIPI-N-GSLTAGFEAYEKKAKNSCMDY--GFH--MAITK-W--DEVV 184 (538)
Q Consensus 122 ----~~~~~~~~----~~~~~l~~GvTt~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~-~--~~~~ 184 (538)
.++++++. .+..++++|||++.+..... + ....+.++...+...+..+.+ .+. ...+. . +.+.
T Consensus 81 ~~~~~~~~d~~~~a~~~~~~~~~~Gvt~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~ 160 (371)
T cd01296 81 ATRAASEDELFASALRRLARMLRHGTTTVEVKSGYGLDLETELKMLRVIRRLKEEGPVDLVSTFLGAHAVPPEYKGREEY 160 (371)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCcccCChHHH
Confidence 12233322 34556889999998842111 1 122334444444443222222 111 01111 0 1111
Q ss_pred H----HHHHH-HHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009282 185 S----DEMEV-MVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 185 ~----~~~~~-~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (538)
. +++.. ...+.+...++.+.. ....+.+.++++++.|+++|+++.+|+.+..... ..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-~~~~------------ 224 (371)
T cd01296 161 IDLVIEEVLPAVAEENLADFCDVFCE---KGAFSLEQSRRILEAAKEAGLPVKIHADELSNIG-GAEL------------ 224 (371)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeec---CCccCHHHHHHHHHHHHHCCCeEEEEEcCcCCCC-HHHH------------
Confidence 1 11111 111345677776532 2335688999999999999999999996532110 0111
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
+...+. ..+.|+...+. +.++++++.|+.+..+|..... .+..
T Consensus 225 -------------------~~~~g~-~~i~H~~~~~~-~~i~~la~~g~~v~~~P~~~~~-------------l~~~--- 267 (371)
T cd01296 225 -------------------AAELGA-LSADHLEHTSD-EGIAALAEAGTVAVLLPGTAFS-------------LRET--- 267 (371)
T ss_pred -------------------HHHcCC-CeeHHhcCCCH-HHHHHHHHcCCeEEEChHHHHH-------------hCCC---
Confidence 111222 23677776665 8899999999999888775321 1111
Q ss_pred cCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHH
Q 009282 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~a 419 (538)
.+| +++++++|+++++|||+.|.... ...+...+..++...+++++++++++
T Consensus 268 ~~~---------~~~l~~~Gv~v~lgsD~~p~~~~-------------------~~~l~~~~~~~~~~~~l~~~~al~~a 319 (371)
T cd01296 268 YPP---------ARKLIDAGVPVALGTDFNPGSSP-------------------TSSMPLVMHLACRLMRMTPEEALTAA 319 (371)
T ss_pred CCC---------HHHHHHCCCcEEEecCCCCCCCh-------------------HHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 122 78999999999999997433211 11122233334445679999999999
Q ss_pred hHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECC
Q 009282 420 STECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 485 (538)
Q Consensus 420 T~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G 485 (538)
|.|||+++|+++++|+|++||.|||||+|.+++..+ ++... ..+|..||++|
T Consensus 320 T~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~~------------~~~~~--~~~v~~v~~~G 371 (371)
T cd01296 320 TINAAAALGLGETVGSLEVGKQADLVILDAPSYEHL------------AYRFG--VNLVEYVIKNG 371 (371)
T ss_pred HHHHHHHhCCCCCceeeCCCCCcCEEEECCCchHhh------------hhhcC--CCCceEEEeCc
Confidence 999999999987899999999999999998876433 22111 24699999998
|
In bacteria, the enzyme is part of histidine utilization (hut) operon. |
| >TIGR01224 hutI imidazolonepropionase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=265.22 Aligned_cols=323 Identities=18% Similarity=0.195 Sum_probs=196.8
Q ss_pred eeeeEEEeCCEEEEecCCCCCCC--CceEEecCCCeeeccccccccccccccC----------CC---------------
Q 009282 69 QIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS--------------- 121 (538)
Q Consensus 69 ~~~~V~I~~grI~~Vg~~~~~~~--~~~vID~~G~~v~PGlID~H~H~~~~~~----------~~--------------- 121 (538)
++++|+|+||+|++||+....+. +.++||++|++|+|||||+|+|+..... +.
T Consensus 2 ~~~~v~i~~g~I~~vg~~~~~~~~~~~~~iD~~g~~v~PGlin~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T TIGR01224 2 EDAVILIHGGKIVWIGQLAALPGEEATEIIDCGGGLVTPGLVDPHTHLVFAGDRVNEFEMKLQGASYLEILAQGGGILST 81 (377)
T ss_pred CceEEEEECCEEEEEechhhCCcccCCeEEeCCCCEEcccEEecccCccccCCcHHHHHHHhCCCCHHHHHHhcCChHHH
Confidence 47899999999999998432222 5689999999999999999999975311 00
Q ss_pred ------CChhhHHH----HHHHHHhCCcEEEecccCCCC--CCHHHHHHHHHHHhcccceeeeee-e---eeec---CC-
Q 009282 122 ------ETIDDFFS----GQAAALAGGTTMHIDFVIPIN--GSLTAGFEAYEKKAKNSCMDYGFH-M---AITK---WD- 181 (538)
Q Consensus 122 ------~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~---~~- 181 (538)
.++++++. .+..++++||||+.+...... ......++...+...+..+..... . .... ..
T Consensus 82 ~~~~~~~~~ed~~~~a~~~~~e~l~~Gvt~ve~~~~~g~~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (377)
T TIGR01224 82 VRATRAASEEELLKLALFRLKSMLRSGTTTAEVKSGYGLDLETELKMLRAAKALHEEQPVDVVTTFLGAHAVPPEFQGRP 161 (377)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCceEEEecccCCCCHHHHHHHHHHHHHHHhhCCCceEeeeeecccCCccccCCH
Confidence 11222222 234568899999843211111 012223333333333221221110 0 1111 00
Q ss_pred hhhHHHH-HHHHH---Hc-CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc
Q 009282 182 EVVSDEM-EVMVK---EK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (538)
Q Consensus 182 ~~~~~~~-~~~~~---~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~ 256 (538)
++..... +.+.+ .. ++..++.+.. ....+.+.+.++++.|+++|+++.+|+.+..... ..+.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~A~~~g~~v~~H~~e~~~~~-~~~~~~------- 230 (377)
T TIGR01224 162 DDYVDGICEELIPQVAEEGLASFADVFCE---AGVFSVEQSRRILQAAQEAGLPVKLHAEELSNLG-GAELAA------- 230 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeeEEEec---CCCcCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-HHHHHH-------
Confidence 1111111 11111 22 3555554321 2345688999999999999999999995432110 111111
Q ss_pred ccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccc
Q 009282 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (538)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
..+ ...+.|+...++ +.++++++.|+.++.||.+. +..+..
T Consensus 231 ------------------------~~g-~~~~~H~~~~~~-~~l~~la~~g~~~~~~P~~~-------------~~l~~~ 271 (377)
T TIGR01224 231 ------------------------KLG-AVSADHLEHASD-AGIKALAEAGTVAVLLPGTT-------------FYLRET 271 (377)
T ss_pred ------------------------HcC-CCccHHHhcCCH-HHHHHHHhcCCEEEECchHH-------------HhcCCc
Confidence 112 123557776665 88999999999988887752 111111
Q ss_pred eeecCCCCCcccHHHHHHHHhcCCceEEeCCCCC-CChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHH
Q 009282 337 YVMSPPIRASGHNKALQAALATGILQLVGTDHCA-FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (538)
Q Consensus 337 ~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~-~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~ea 415 (538)
. .++++++++|+++++|||+.+ .++.. .+...+.......+++++++
T Consensus 272 ---~---------~p~~~l~~~Gv~v~lgTD~~~~~~~~~--------------------~~~~~~~~~~~~~~ls~~ea 319 (377)
T TIGR01224 272 ---Y---------PPARQLIDYGVPVALATDLNPGSSPTL--------------------SMQLIMSLACRLMKMTPEEA 319 (377)
T ss_pred ---C---------ccHHHHHHCCCCEEEECCCCCCCChhH--------------------HHHHHHHHHHHhcCCCHHHH
Confidence 1 237889999999999999754 22111 12222222334456999999
Q ss_pred HHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEE
Q 009282 416 VRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 487 (538)
Q Consensus 416 l~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~ 487 (538)
++++|.|||+++|+++.+|+|++||.|||||+|.+++..+ ++... ..+|..||++|++
T Consensus 320 l~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~------------~~~~~--~~~v~~v~v~G~~ 377 (377)
T TIGR01224 320 LHAATVNAAYALGLGEERGTLEAGRDADLVILSAPSYAEI------------PYHYG--VNHVHAVIKNGNI 377 (377)
T ss_pred HHHHHHHHHHHhCCCCCceeeCCCCcCCEEEEcCCChHHh------------hhhcC--CCCceEEEECCCC
Confidence 9999999999999987799999999999999998876433 22211 3489999999974
|
This enzyme catalyzes the third step in histidine degradation. |
| >PRK11170 nagA N-acetylglucosamine-6-phosphate deacetylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-30 Score=261.10 Aligned_cols=355 Identities=20% Similarity=0.198 Sum_probs=234.2
Q ss_pred EEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCC-----CCChhhHH
Q 009282 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SETIDDFF 128 (538)
Q Consensus 55 ~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~-----~~~~~~~~ 128 (538)
++|+|++|++++.. .+++|+|+||+|++|++..+.+.+.++||++|++|+|||||+|+|......- ..+.+.+.
T Consensus 2 ~~i~n~~i~~~~~~~~~~~v~IedgkI~~I~~~~~~~~~~~~ID~~G~~l~PG~ID~HvHG~~g~~~~~~~~~~~~~~l~ 81 (382)
T PRK11170 2 YALTNGRIYTGHEVLDDHAVVIADGLIEAVCPVAELPPGIEQRDLNGAILSPGFIDLQLNGCGGVQFNDTAEAISVETLE 81 (382)
T ss_pred EEEEeeEEECCCCeEeCCEEEEECCEEEEecCCccCCCCCeEEeCCCCEEccceeeeeecCccCcccccCccCCCHHHHH
Confidence 67999999998865 4679999999999998754433456899999999999999999997654211 13556777
Q ss_pred HHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeee
Q 009282 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (538)
...+.++++|||+++++...... ...+.++...+.. ......+|+|...+..+.+ ..|+..-...
T Consensus 82 ~~~~~~~~~GvTt~lpT~it~~~~~~~~~l~~~~~~~~~~~a~~~G~HlEGPfi~~~----------~~Gah~~~~~--- 148 (382)
T PRK11170 82 IMQKANEKSGCTSFLPTLITSSDELMKQAVRVMREYLAKHPNQALGLHLEGPYLNLV----------KKGTHNPEFI--- 148 (382)
T ss_pred HHHHHHHhcCEeEEeeeccCCCHHHHHHHHHHHHHHHhcCCCeEEEEEeecCCCCcc----------cCCCCCHHHh---
Confidence 77888899999999988654443 4455555554432 2356778888888776642 2344322111
Q ss_pred CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCE
Q 009282 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (538)
Q Consensus 207 ~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 286 (538)
...+.++++.+.+.+ ..+++.+=+++... .+.++.+.+.|+..+.+|+.+. ++++.++++. |..
T Consensus 149 ---~~p~~~~~~~~~~~~--~~i~~iTlAPE~~~-~~~i~~l~~~gi~vs~GHs~A~-----~~~~~~a~~~----Ga~- 212 (382)
T PRK11170 149 ---RKPDAEMVDFLCENA--DVITKVTLAPEMVD-AEVIRKLVEAGIVVSAGHSNAT-----YEEAKAGFRA----GIT- 212 (382)
T ss_pred ---cCcCHHHHHHHHhcc--CCEEEEEECCCCCc-HHHHHHHHHCCcEEEeeCCcCC-----HHHHHHHHHc----CCC-
Confidence 123567777777654 24566666655443 3788888888888888887543 3444444443 333
Q ss_pred EEEeccCHHH------HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc-C
Q 009282 287 YVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-G 359 (538)
Q Consensus 287 ~~~h~~~~~~------~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~-G 359 (538)
+++|+.++-. .-.+..+-.. -.+.++..++..++++.. ++-+.+. |
T Consensus 213 ~~THlfNaM~~~~hR~pg~vga~l~~-~~~~~elI~Dg~Hv~p~~--------------------------~~~~~~~k~ 265 (382)
T PRK11170 213 FATHLYNAMPYITGREPGLVGAILDE-PDVYCGIIADGLHVDYAN--------------------------IRNAKRLKG 265 (382)
T ss_pred EEeeccccCCcccCCCcchhhHhhcC-CCcEEEEEcCcccCCHHH--------------------------HHHHHHhcC
Confidence 4677655221 0111111111 134555555555554433 2322222 4
Q ss_pred CceEEeCCCCCCCh---hhhhcCc------cCcccCCCC-CcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 360 ILQLVGTDHCAFNS---TQKAFGI------DDFRKIPNG-VNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 360 v~~~lgtD~~~~~~---~~~~~~~------~~~~~~~~g-~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
-++.+-||...... ....++. +.......| ++|....+...+++++...++++++|++++|.|||+.+|+
T Consensus 266 ~~~~lvtDa~~~~G~~~g~y~l~~~~v~v~~g~~~~~~G~LAGs~l~l~~~v~~l~~~~~~~~~eal~~aT~npA~~lgl 345 (382)
T PRK11170 266 DKLCLVTDATAPAGANIEQFIFAGKTIYYRDGLCVDENGTLSGSALTMIEAVRNLVEHVGIALDEALRMATLYPARAIGV 345 (382)
T ss_pred CcEEEEeccccCCCCCCCeEEECCEEEEEECCEEECCCCcccccHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence 56788888553222 1111111 111122334 6777778888888888888899999999999999999999
Q ss_pred CCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE
Q 009282 430 YPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 430 ~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
++.+|+|++|+.|||+|+|.+ .+++.||++|++++-
T Consensus 346 ~~~~G~i~~G~~ADlvvld~~-------------------------~~v~~v~~~G~~~~~ 381 (382)
T PRK11170 346 DKRLGSIEAGKVANLTAFTRD-------------------------FKITKTIVNGNEVVT 381 (382)
T ss_pred CCCccccCCCCcCCEEEECCC-------------------------CcEEEEEECCEEeec
Confidence 766899999999999999954 368999999999874
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=265.65 Aligned_cols=301 Identities=19% Similarity=0.160 Sum_probs=190.7
Q ss_pred ceEEecCCCeeeccccccccccccccCCCCC----hhh-----HHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHH
Q 009282 93 VKVLDATGKFVMPGGIDPHTHLAMEFMGSET----IDD-----FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK 163 (538)
Q Consensus 93 ~~vID~~G~~v~PGlID~H~H~~~~~~~~~~----~~~-----~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~ 163 (538)
+++||++|++|+|||||+|+|+......... ... .....+.++++||||++|++........+.++.....
T Consensus 1 ~~vID~~g~~v~PGliD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~g~~~~~~~~~~~~~g~~~ 80 (342)
T cd01299 1 AQVIDLGGKTLMPGLIDAHTHLGSDPGDLPLDLALPVEYRTIRATRQARAALRAGFTTVRDAGGADYGLLRDAIDAGLIP 80 (342)
T ss_pred CcEEeCCCCEECCCeeeeeeeccccCCCccccccCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCcchHHHHHHHHcCCcc
Confidence 4689999999999999999998664111110 111 1245778899999999999754322112222222222
Q ss_pred hcccce------------eeee---------eeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCC--------CccCCH
Q 009282 164 AKNSCM------------DYGF---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG--------SFMIND 214 (538)
Q Consensus 164 ~~~~~~------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~--------~~~~~~ 214 (538)
+++.+. ++.. +.......++...+++++. +.|++.+|+|.++.. ...++.
T Consensus 81 gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~G~~~iK~~~~g~~~~~~~~~~~~~~~~ 159 (342)
T cd01299 81 GPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRAAVREQL-RRGADQIKIMATGGVLSPGDPPPDTQFSE 159 (342)
T ss_pred CCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHHHHHHHH-HhCCCEEEEeccCCcCCCCCCCcccCcCH
Confidence 222111 1100 1112223455677788877 779999999987531 235789
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCH
Q 009282 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (538)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~ 294 (538)
+.++++++.|+++|+++.+|+.+...+...+ +.| .. .+.|+...
T Consensus 160 e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l----~~G-------------------------------~~-~i~H~~~~ 203 (342)
T cd01299 160 EELRAIVDEAHKAGLYVAAHAYGAEAIRRAI----RAG-------------------------------VD-TIEHGFLI 203 (342)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HcC-------------------------------CC-EEeecCCC
Confidence 9999999999999999999998764333222 222 22 47898877
Q ss_pred HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChh
Q 009282 295 DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNST 374 (538)
Q Consensus 295 ~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~ 374 (538)
+. +.++++++.|+.+++++.....+...... ..+......+.. ........+++.++++|+++++|||....+..
T Consensus 204 ~~-~~~~~l~~~g~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~l~~~Gv~v~~GTD~~~~~~~ 278 (342)
T cd01299 204 DD-ETIELMKEKGIFLVPTLATYEALAAEGAA--PGLPADSAEKVA--LVLEAGRDALRRAHKAGVKIAFGTDAGFPVPP 278 (342)
T ss_pred CH-HHHHHHHHCCcEEeCcHHHHHHHHhhccc--cCCCHHHHHHHH--HHHHHHHHHHHHHHHcCCeEEEecCCCCCCCc
Confidence 76 88999999999888776643221100000 000000000000 00012235678899999999999996531100
Q ss_pred hhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCcee
Q 009282 375 QKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE 454 (538)
Q Consensus 375 ~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~ 454 (538)
+ ..+...+..+... ++|+.++|+++|.|||+++|+++++|+|++||.|||||+|.|++.+
T Consensus 279 --------------~-----~~~~~e~~~~~~~-~~~~~~al~~~T~~~a~~~g~~~~~G~i~~G~~ADlvvl~~~pl~d 338 (342)
T cd01299 279 --------------H-----GWNARELELLVKA-GGTPAEALRAATANAAELLGLSDELGVIEAGKLADLLVVDGDPLED 338 (342)
T ss_pred --------------h-----hHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHhCccCCcceECCCCcCCEEEECCChhhh
Confidence 0 0111222233344 5899999999999999999998889999999999999999998755
Q ss_pred e
Q 009282 455 I 455 (538)
Q Consensus 455 ~ 455 (538)
+
T Consensus 339 i 339 (342)
T cd01299 339 I 339 (342)
T ss_pred h
Confidence 5
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PLN02303 urease | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=269.54 Aligned_cols=348 Identities=16% Similarity=0.203 Sum_probs=215.3
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC------------CCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~------------~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
..+++|+|++|+|..+...++|+|+||||++||+.... .+++++||++|++|+|||||+|+|+..+
T Consensus 333 ~~DlVItNa~IID~~Gi~kaDI~IkDGrIvaIGkagnp~i~~gv~~~~~~g~~teVIDAeGlIVtPG~ID~HVHf~~P-- 410 (837)
T PLN02303 333 SLDTVITNAVIIDYTGIYKADIGIKDGLIVGIGKAGNPDVMDGVTSNMIVGVNTEVIAGEGMIVTAGGIDCHVHFICP-- 410 (837)
T ss_pred cCCEEEeCeEEECCCCcEEeEEEEECCEEEEecCCCCcccccccccccccCCCCeEEECCCCEEEeCEEEeecCCCCC--
Confidence 45799999999996667788999999999999974211 1247899999999999999999998655
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCCC-----CC---CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHH
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-----NG---SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
++ ...++++||||+++++... .. .....++...+......++++++.... ....+++.++
T Consensus 411 g~---------~~eaLasGVTTai~GGtgp~pnT~ptt~t~g~e~I~~~L~aa~~~pvn~Gf~gkG~---~s~l~eL~el 478 (837)
T PLN02303 411 QL---------ATEAIASGITTLVGGGTGPAHGTCATTCTPAPSHMKLMLQSTDDLPLNFGFTGKGN---TAKPEGLHEI 478 (837)
T ss_pred cH---------HHHHHHHhHHHHHhcCCCCCCcccCcCCCCCHHHHHHHHHhcccCCCcEEEEccCc---ccCHHHHHHH
Confidence 21 2566777777777654321 00 135666666666656678888765332 2345667777
Q ss_pred HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh---HHHHHHHHHHcCCCCcccccccCCchHH
Q 009282 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQKRMIELGITGPEGHALSRPPLLE 268 (538)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 268 (538)
. +.|+.++|.+.. +..+.+.+.+.++.|+++|+++++|+++..+ ++..+ ..+|.+...
T Consensus 479 i-eaGa~GfK~h~d----~gvTpelL~raLe~AkelGVpVaIHAEdLnE~G~vE~t~---~a~G~RpIh----------- 539 (837)
T PLN02303 479 I-KAGAMGLKLHED----WGTTPAAIDNCLDVAEEYDIQVTIHTDTLNESGCVEHSI---AAFKGRTIH----------- 539 (837)
T ss_pred H-HcCcEEEEECCC----CCCCHHHHHHHHHHHHHcCCEEEEecCcccccchHHHHH---HHHCCChHH-----------
Confidence 6 679999987532 3467999999999999999999999987544 33233 223332210
Q ss_pred HHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCC-cEEEecc-----------------ccccccCcccccCCC
Q 009282 269 GEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQ-RVIGEPV-----------------VSGLVLDDSWLWHSD 330 (538)
Q Consensus 269 ~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~-~v~~~~~-----------------~~~~~~~~~~~~~~~ 330 (538)
..+..| +.-.|. .+.++.....++ +-+.+|+ +|++ ++..-++..
T Consensus 540 ---------~~h~~G--a~ggha-----pdi~~~~~~~nvlpsstnpt~p~t~nt~~e~~dm~m~~h~l--~~~~~edva 601 (837)
T PLN02303 540 ---------TYHSEG--AGGGHA-----PDIIKVCGVKNVLPSSTNPTRPYTKNTIDEHLDMLMVCHHL--DKNIPEDVA 601 (837)
T ss_pred ---------HHHhcC--CCCCCC-----cHHHHhcCCCCccCCCCCCCCCCccCchhhhcCeEEeecCC--CCCCcchhh
Confidence 000000 000010 011211111111 0001111 1222 222211112
Q ss_pred cccccceeecCCCCCcccHHHHH-HHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh-h--
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV-E-- 406 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~-~-- 406 (538)
|.. .|.+....+.. -+++.|+...++||+.....-.. ...++| ....++. .
T Consensus 602 fa~---------srir~~tiaaed~l~d~G~~s~~~SDs~amgr~ge-----~i~r~~-----------q~A~k~~~~~g 656 (837)
T PLN02303 602 FAE---------SRIRAETIAAEDILHDMGAISIISSDSQAMGRIGE-----VITRTW-----------QTAHKMKSQRG 656 (837)
T ss_pred hhh---------hhccchhhccchhhhccCCEEEEeccchhhCcccc-----eeeehH-----------HHHHHHHHhcC
Confidence 211 12222222233 35667999999999764433211 111111 1111111 1
Q ss_pred --------cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEE
Q 009282 407 --------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKV 478 (538)
Q Consensus 407 --------~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 478 (538)
....+.+++|++.|+|||+++|+++.+|||++||.||||||+++.+ ..++
T Consensus 657 ~l~~~~~~~dn~rv~~aL~~~TiN~A~AlG~~~~vGSLe~GK~ADlVvw~~~~f----------------------g~~~ 714 (837)
T PLN02303 657 ALEPRGADNDNFRIKRYIAKYTINPAIAHGMSHFVGSVEVGKLADLVLWKPAFF----------------------GAKP 714 (837)
T ss_pred CCCCccccccccCHHHHHHHHhHHHHHHCCcccCceeeCCCcccCEEEeccccc----------------------CCCe
Confidence 1235679999999999999999999999999999999999997543 2468
Q ss_pred EEEEECCEEEEEC-Ceeecc
Q 009282 479 EVTIAGGRVVWEN-DELNVV 497 (538)
Q Consensus 479 ~~V~v~G~~V~~~-~~~~~~ 497 (538)
..||++|++||.. |.....
T Consensus 715 ~~vi~~G~ivy~~~gd~nas 734 (837)
T PLN02303 715 EMVIKGGQIAWAQMGDPNAS 734 (837)
T ss_pred eEEEECCEEEEccCCCcccc
Confidence 9999999999998 665544
|
|
| >PRK07583 cytosine deaminase-like protein; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.4e-30 Score=261.65 Aligned_cols=358 Identities=20% Similarity=0.205 Sum_probs=215.2
Q ss_pred cccEEEECcEEEcC------------CCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNA------------HHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~------------~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
...+.|+|+++-+. +.....+|.|+||||++|++....+.+.++||++|++|+|||||+|+|+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~dg~i~~i~~~~~~~~~~~~id~~g~~v~Pg~id~H~Hld~~~~ 89 (438)
T PRK07583 10 SGRYWLKNARVPAALLEGGVPPGDTLEGLVLVDIEIADGKIAAILPAGGAPDELPAVDLKGRMVWPCFVDMHTHLDKGHI 89 (438)
T ss_pred CCcEEEeccccccccccCccCCCcCCCCcEEEEEEEECCEEEEEecCCCCCCCCceecCCCCcccCCcccceecccccee
Confidence 34588888886432 122467999999999999987643446789999999999999999999866411
Q ss_pred C-----------------------CCChhh----HHHHHHHHHhCCcEEEecccCCC-C--CCHHHHHHHHHHHhcc-c-
Q 009282 120 G-----------------------SETIDD----FFSGQAAALAGGTTMHIDFVIPI-N--GSLTAGFEAYEKKAKN-S- 167 (538)
Q Consensus 120 ~-----------------------~~~~~~----~~~~~~~~l~~GvTt~~d~~~~~-~--~~~~~~~~~~~~~~~~-~- 167 (538)
. ..+.++ +....+.++.+|+|+++...... . ....+.+....+.... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~Gtt~vRt~vd~~~~~~~~~~~~i~~~~~~~~~~~~ 169 (438)
T PRK07583 90 WPRSPNPDGTFPGALDAVTADREAHWSAEDLYRRMEFGLRCAYAHGTSAIRTHLDSFAPQAAISWEVFAELREAWAGRIA 169 (438)
T ss_pred cCCCCCCCCCHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhChhhEEeeeccCCCCcccHHHHHHHHHHHhhccCe
Confidence 0 001233 44556778899999666543211 1 1122223222222211 1
Q ss_pred ---ceeeeeeeeeecCChhhHHHHHHHHHHc-CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHH
Q 009282 168 ---CMDYGFHMAITKWDEVVSDEMEVMVKEK-GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVF 242 (538)
Q Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~ 242 (538)
...++++.... +...++.+...+. |..+.+.+.. + -+.+.+.++++.|+++|+++.+|+. ......
T Consensus 170 ~~~v~~~p~~~~~~----~~~~eL~~~v~~~~gv~g~~~~~~----~-~~d~~l~~i~~lA~~~G~~v~vH~~E~~~~~~ 240 (438)
T PRK07583 170 LQAVSLVPLDAYLT----DAGERLADLVAEAGGLLGGVTYMN----P-DLDAQLDRLFRLARERGLDLDLHVDETGDPAS 240 (438)
T ss_pred EEEEEecChhhccC----chHHHHHHHHHHcCCEEeCCCCCC----C-CHHHHHHHHHHHHHHhCCCcEEeECCCCCchH
Confidence 11122211111 1124444444233 3333322211 1 1568899999999999999999994 332211
Q ss_pred HHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHc--CCCEEEEeccCHHH------HHHHHHHHHcCCcEEEec
Q 009282 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV--NTPLYVVHVMSMDA------MEEIAKARKAGQRVIGEP 314 (538)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~h~~~~~~------~~~i~~~~~~g~~v~~~~ 314 (538)
..+ ....+.+... ..++++.|+..... .+.++++++.|+.++.||
T Consensus 241 ~~l---------------------------~~~~~~~~~~G~~~~v~i~H~~~l~~~~~~~~~~~i~~la~~gv~vv~~P 293 (438)
T PRK07583 241 RTL---------------------------KAVAEAALRNGFEGKVTCGHCCSLAVQPEEQAQATIALVAEAGIAIVSLP 293 (438)
T ss_pred HHH---------------------------HHHHHHHHHhCCCCCEEEEeccchhcCCHHHHHHHHHHHHHcCCeEEECc
Confidence 111 1111222222 24688999976441 278999999999999888
Q ss_pred cccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCC-cch
Q 009282 315 VVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGV-NGI 393 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~-~g~ 393 (538)
............ ..|.. ....+++.++++|+++++|||+... +|. |+|. ..+
T Consensus 294 ~~~~~l~~~~~~------------~~p~~---~~~~~v~~l~~aGV~valGtD~~~d----------~~~--p~g~~~~~ 346 (438)
T PRK07583 294 MCNLYLQDRQPG------------RTPRW---RGVTLVHELKAAGIPVAVASDNCRD----------PFY--AYGDHDML 346 (438)
T ss_pred chhhhhcCCCcC------------CCCCC---CCcchHHHHHHCCCeEEEEeCCCCC----------CCC--CCCCcCHH
Confidence 753211100000 01111 1224588999999999999997531 221 2221 111
Q ss_pred hhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeE
Q 009282 394 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473 (538)
Q Consensus 394 ~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (538)
+. +.... ... ..+.++.++|+++|.|||+++|+++ +|+|++||.|||||+|.+++..+.. .
T Consensus 347 ~~-~~~a~-~~~-~~~~~~~~al~~~T~~~A~~lg~~~-~G~i~~G~~ADlvv~d~~~~~~~~~------------~--- 407 (438)
T PRK07583 347 EV-FREAV-RIL-HLDHPYDDWPAAVTTTPADIMGLPD-LGRIAVGAPADLVLFKARSFSELLS------------R--- 407 (438)
T ss_pred HH-HHHHH-HHH-hcCCcHHHHHHHHhHHHHHHcCCCC-CCCcCCCCCCCEEEEcCCCHHHHHh------------c---
Confidence 11 11111 111 2247899999999999999999965 8999999999999999987644311 0
Q ss_pred EeeEEEEEEECCEEEEECC
Q 009282 474 VKGKVEVTIAGGRVVWEND 492 (538)
Q Consensus 474 ~~~~v~~V~v~G~~V~~~~ 492 (538)
...+..||++|++|++..
T Consensus 408 -~~~~~~V~~~G~~v~~~~ 425 (438)
T PRK07583 408 -PQSDRIVLRAGKPIDTTL 425 (438)
T ss_pred -CCCccEEEECCEEecccC
Confidence 235778999999987653
|
|
| >cd01308 Isoaspartyl-dipeptidase Isoaspartyl dipeptidase hydrolyzes the beta-L-isoaspartyl linkages in dipeptides, as part of the degradative pathway to eliminate proteins with beta-L-isoaspartyl peptide bonds, bonds whereby the beta-group of an aspartate forms the peptide link with the amino group of the following amino acid | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-29 Score=254.62 Aligned_cols=361 Identities=19% Similarity=0.219 Sum_probs=208.4
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCC--CCceEEecCCCeeeccccccccccccccCC-CCChhhHHHHH
Q 009282 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ 131 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~--~~~~vID~~G~~v~PGlID~H~H~~~~~~~-~~~~~~~~~~~ 131 (538)
++|+|++|++++...+++|+|+||+|++|++....+ .+.++||++|++|+|||||+|+|+...... ...........
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~v~~~~~~~~~~~~~~id~~g~~v~PG~id~H~H~~~~~~~~~~~~~~~~~~~ 81 (387)
T cd01308 2 TLIKNAEVYAPEYLGKKDILIAGGKILAIEDQLNLPGYENVTVVDLHGKILVPGFIDQHVHIIGGGGEGGPSTRTPEVTL 81 (387)
T ss_pred EEEECcEEeCCCCccceEEEEECCEEEEEeCCcccccCCCCeEEECCCCEEccCeeehhhCcccccCCCcccccCHHHHH
Confidence 579999999987767889999999999999865332 357899999999999999999998653100 00111222345
Q ss_pred HHHHhCCcEEEecccCCCCC-CHH----HHHHHHHHHhcccceeeeeeeeee-cCChhhHHHHHHHHHHcCCcEEEEEee
Q 009282 132 AAALAGGTTMHIDFVIPING-SLT----AGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVSDEMEVMVKEKGINSFKFFMA 205 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (538)
..++++|+||++|+...... ... ...+...+.+-+.+...+++.... ...+....++.......+ .+. ....
T Consensus 82 ~~~~~~G~tt~~d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~-~~~~ 159 (387)
T cd01308 82 SDLTTAGVTTVVGCLGTDGISRSMEDLLAKARALEEEGITCFVYTGSYEVPTRTITGSIRKDLLLIDKVIG-VGE-IAIS 159 (387)
T ss_pred HHHHhCCceEEecCcCCCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCcCchhhHHHHHHHHHHhcC-cce-EEEc
Confidence 67799999999998732221 112 223333334434333332211000 001111111222111112 111 1112
Q ss_pred eCCCccCCHHHHHHHHHHHHhcCC------eEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHH
Q 009282 206 YKGSFMINDELLIEGFKRCKSLGA------LAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (538)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~ 279 (538)
..+........+.++...++..+. .+++|..... ..++++.++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vh~~~~~------------------------------~~~~~i~~~~ 209 (387)
T cd01308 160 DHRSSQPTVEELARIAAEARVGGLLGGKAGIVHIHLGDGK------------------------------RALSPIFELI 209 (387)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCch------------------------------HHHHHHHHHH
Confidence 222234456777777777765433 3566664221 2233344444
Q ss_pred HHcCCCE-EEEeccCHHHHH---HHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHH
Q 009282 280 EFVNTPL-YVVHVMSMDAME---EIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAA 355 (538)
Q Consensus 280 ~~~~~~~-~~~h~~~~~~~~---~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~ 355 (538)
.+.|.++ ++.|.......+ ...+..++|..+-...... ..+...|+. ...+.++.+
T Consensus 210 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~i~~~~~-----------------~~~~~~~~~---~~~~~l~~~ 269 (387)
T cd01308 210 EETEIPITQFLPTHINRTAPLFEQGVEFAKMGGTIDLTSSID-----------------PQFRKEGEV---RPSEALKRL 269 (387)
T ss_pred HhcCCCcceeECCcccCCHHHHHHHHHHHHcCCcEEEECCCC-----------------ccccccCcc---ChHHHHHHH
Confidence 4445544 444443322212 2223444565443321110 001111111 124667888
Q ss_pred HhcCC---ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCC
Q 009282 356 LATGI---LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 432 (538)
Q Consensus 356 l~~Gv---~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~ 432 (538)
++.|+ +++++||+....+.... .+.+ .+.|..+....+.... .++..+++|++++++++|.|||+++|+++
T Consensus 270 ~~~g~~~d~i~l~TD~~~~~p~~~~--~g~~--~~~g~~~~~~~~~~~~-~~v~~~~i~~~~al~~~T~npA~~lg~~~- 343 (387)
T cd01308 270 LEQGVPLERITFSSDGNGSLPKFDE--NGNL--VGLGVGSVDTLLREVR-EAVKCGDIPLEVALRVITSNVARILKLRK- 343 (387)
T ss_pred HHhCCCCCcEEEEECCCCCcccCcc--CCeE--EecCcCcHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHhCCCC-
Confidence 99986 36999997422111000 0011 1345555554444443 66677789999999999999999999954
Q ss_pred CcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 433 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 433 ~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
+|+|++|+.|||+++|.+ .++..|+++|++|+++|+++.++
T Consensus 344 ~G~i~~G~~ADlvv~d~~-------------------------~~~~~~~~~G~~v~~~~~~~~~~ 384 (387)
T cd01308 344 KGEIQPGFDADLVILDKD-------------------------LDINSVIAKGQIMVRNGKLLVKG 384 (387)
T ss_pred CCCcCCCCcCCEEEEcCC-------------------------CCEEEEEECCEEEEECCeEeecc
Confidence 899999999999999965 15788999999999999998654
|
Formation of this bond is a spontaneous nonenzymatic reaction in nature and can profoundly effect the function of the protein. Isoaspartyl dipeptidase is an octameric enzyme that contains a binuclear zinc center in the active site of each subunit and shows a strong preference of hydrolyzing Asp-Leu dipeptides. |
| >cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=248.00 Aligned_cols=320 Identities=16% Similarity=0.152 Sum_probs=231.6
Q ss_pred eccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHH-HHhccc-ceeeeeeeeeecC
Q 009282 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYE-KKAKNS-CMDYGFHMAITKW 180 (538)
Q Consensus 104 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 180 (538)
+||+||+|+|+..+ +++.+.++++.++| |++++|....+. ...+.++... ...... +.++.++......
T Consensus 3 ~Pg~iD~h~h~~~~-------~~~~~~~~aa~~gG-Ttvv~mpnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (335)
T cd01294 3 IPRPDDMHLHLRDG-------AMLKLVLPYTARGF-SRAIVMPNLKPPVTTTADALAYRERILAADPGPNFTPLMTLYLT 74 (335)
T ss_pred CCCcceeEecCCCc-------hHHHHHHHHHHhCC-CEEEECCCCCCCCCCHHHHHHHHHHHHhcCCCCcEEEEEEEecc
Confidence 69999999999742 78888899999999 999999654322 2233233332 222333 3455544443222
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEEeee----CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc
Q 009282 181 DEVVSDEMEVMVKEKGINSFKFFMAY----KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~----~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~ 256 (538)
.+...++++++.+..|+.++|+|... .+....+.+.+..+++.+.+.|+++.+|+++......
T Consensus 75 ~~~~~~el~~~~~~~G~~g~Klf~~~~~~~~~~~~~d~~~l~~~~e~~~~~g~~V~vHaE~~~l~~~------------- 141 (335)
T cd01294 75 ENTTPEELREAKKKGGIRGVKLYPAGATTNSQGGVTDLEKIYPVLEAMQKLGMPLLVHGEVPDFKID------------- 141 (335)
T ss_pred CCCCHHHHHHHHHhCCceEEEEecCCCccCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCCCccccc-------------
Confidence 22245677777644599999998642 1122235688999999999999999999987542110
Q ss_pred ccccccCCchHHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccc
Q 009282 257 EGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (538)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (538)
+...+.+.+.++..++.+. +.++|+.|+++...++.++..++ +|++++++|||.++++.+.... .+.
T Consensus 142 -------~~~~e~~~~~~~~~lA~~~p~~~v~i~Hvst~~~~~~i~~ak~---~vt~Et~ph~L~l~~~~~~~~~--~g~ 209 (335)
T cd01294 142 -------VLDREAKFIPVLEPLAQRFPKLKIVLEHITTADAVEYVKSCNE---NVAATITPHHLLLTRDDLLGGG--LNP 209 (335)
T ss_pred -------chhhHHHHHHHHHHHHHHcCCCeEEEecccHHHHHHHHHhCCC---CcEEEEchhHheeeHHHhcCCC--CCC
Confidence 0011223456678888874 99999999999887777765544 7999999999999988764311 247
Q ss_pred ceeecCCCCCcccHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHH
Q 009282 336 KYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTD 414 (538)
Q Consensus 336 ~~~~~p~~r~~~~~~~l~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~e 414 (538)
.++++||+|...+++.+|++++.|... .++|||+|++...|.. ++. ..|+.+++..++.++ ..+. +++|+++
T Consensus 210 ~~k~~PPlR~~~d~~~L~~~l~~G~id~~i~SDHaP~~~~~K~~---~~g--~~Gi~~~~~~l~~~~-~~~~-~~l~l~~ 282 (335)
T cd01294 210 HLYCKPVAKRPEDREALRKAATSGHPKFFLGSDSAPHPKSNKES---SCG--CAGIFSAPIALPYLA-EVFE-EHNALDK 282 (335)
T ss_pred CeEEcCCCCCHHHHHHHHHHHHcCCCCeEEECCCCCCCCccccC---CCC--CccccCHHHHHHHHH-HHHh-ccCCHHH
Confidence 899999999999999999999999999 5999999999877641 222 225555554666666 4444 4799999
Q ss_pred HHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeE
Q 009282 415 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473 (538)
Q Consensus 415 al~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (538)
+++..+.|||++||+.+.+|+| ++.+ ..|.++.+++.+...|+||+|..
T Consensus 283 ~v~~~s~nPA~i~gl~~~kg~i--------~~~~--~~~~v~~~~~~s~~~~sp~~g~~ 331 (335)
T cd01294 283 LEAFASDNGPNFYGLPPNKKTI--------TLVK--EPWKVPEKIPFGNNGVVPFRAGE 331 (335)
T ss_pred HHHHHHhHHHHHhCCCCCCCeE--------EEEe--eceEcCchhccCCCceecccCCc
Confidence 9999999999999996655554 4554 77889888999999999999864
|
In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric. |
| >cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-29 Score=248.80 Aligned_cols=325 Identities=21% Similarity=0.274 Sum_probs=198.6
Q ss_pred EEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccccccccccccc-CCCCChhhHHHHHHHH
Q 009282 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF-MGSETIDDFFSGQAAA 134 (538)
Q Consensus 56 ~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~-~~~~~~~~~~~~~~~~ 134 (538)
+|+|++|+++....+.+|+|+||+|++|++..+.+.+.++||++|++|+|||||+|+|.+... ....+.+.+....+.+
T Consensus 2 ~i~~~~v~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~vid~~g~~l~PG~iD~H~H~~~g~~~~~~~~e~~~~~~~~~ 81 (374)
T cd00854 2 IIKNARILTPGGLEDGAVLVEDGKIVAIGPEDELEEADEIIDLKGQYLVPGFIDIHIHGGGGADFMDGTAEALKTIAEAL 81 (374)
T ss_pred EEEeEEEeCCCEEcccEEEEECCEEEEecCCCCcccCCcEEECCCCEecccEEEeeecccCCCCCCCCCHHHHHHHHHHH
Confidence 789999999844468899999999999988654444568999999999999999999986541 1122467788889999
Q ss_pred HhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc--cceeeeeeeeeecCCh-------------hhHHHHHHHHHHcCCc
Q 009282 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN--SCMDYGFHMAITKWDE-------------VVSDEMEVMVKEKGIN 198 (538)
Q Consensus 135 l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~ 198 (538)
+++||||++++...... ...+.+..+.+.... +...++++...+..+. ...++++++. ..+.+
T Consensus 82 ~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~g~~~~g~hleGP~~~~~~~g~h~~~~~~~~~~~~~~~~~-~~~~~ 160 (374)
T cd00854 82 AKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQGAEILGIHLEGPFISPEKKGAHPPEYLRAPDPEELKKWL-EAAGG 160 (374)
T ss_pred HccCcceeeccccCCCHHHHHHHHHHHHHHhhcCCCCeeEEEeeecCccCcccCCCCCHHHcCCcCHHHHHHHH-HhcCC
Confidence 99999999998644332 344444554443322 2344444443332211 1235667776 45568
Q ss_pred EEEEEeeeCCCccCCHHHH--HHHHHHHHhcCCeEE-EEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 199 SFKFFMAYKGSFMINDELL--IEGFKRCKSLGALAM-VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 199 ~ik~~~~~~~~~~~~~~~l--~~~~~~A~~~g~~v~-~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
.+|++. +.+|.. .+++++++++|+++. .|.... ........+.|+..
T Consensus 161 ~ik~~t-------laPE~~~~~~~i~~~~~~gi~v~~GH~~a~---~~~~~~a~~~G~~~-------------------- 210 (374)
T cd00854 161 LIKLVT-------LAPELDGALELIRYLVERGIIVSIGHSDAT---YEQAVAAFEAGATH-------------------- 210 (374)
T ss_pred CEEEEE-------ECCCCCChHHHHHHHHHCCeEEEeeCCcCC---HHHHHHHHHcCCCe--------------------
Confidence 888862 345555 789999999999995 998632 12223333445543
Q ss_pred HHHHHHcCCCEEEEeccCHHH------HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccH
Q 009282 276 IRLAEFVNTPLYVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHN 349 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~~~~~------~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 349 (538)
++|+.+.-. ...+...-+.. .++++.+.+..+++++
T Consensus 211 ------------~tH~~n~m~~~~~r~~~~~~a~l~~~-~~~~~li~dg~Hv~~~------------------------- 252 (374)
T cd00854 211 ------------VTHLFNAMSPLHHREPGVVGAALSDD-DVYAELIADGIHVHPA------------------------- 252 (374)
T ss_pred ------------eeECCCCCCCcCCCCCcHHHHhhcCC-CCeEEEEcCCCcCCHH-------------------------
Confidence 333322100 00011011000 1223333332222221
Q ss_pred HHHHHHHhc-C-CceEEeCCCCCCCh---hhhhcC-------ccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHH
Q 009282 350 KALQAALAT-G-ILQLVGTDHCAFNS---TQKAFG-------IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (538)
Q Consensus 350 ~~l~~~l~~-G-v~~~lgtD~~~~~~---~~~~~~-------~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~ 417 (538)
.+..+.+. | -++++.||...... ....+. .+.........+|....+...++.++..++++++++++
T Consensus 253 -~~~~~~r~~g~~~~~lvtD~~~~~G~~~g~y~~~~~~~~~~~~~~~~~~g~laG~~~~l~~~~~~l~~~~~l~~~~al~ 331 (374)
T cd00854 253 -AVRLAYRAKGADKIVLVTDAMAAAGLPDGEYELGGQTVTVKDGVARLADGTLAGSTLTMDQAVRNMVKWGGCPLEEAVR 331 (374)
T ss_pred -HHHHHHHhcCCCcEEEEeccccccCCCCCeEEECCEEEEEECCEEEcCCCCeeehHhhHHHHHHHHHHhhCCCHHHHHH
Confidence 12222222 3 34555666422111 000000 00111111224555566777777788888899999999
Q ss_pred HHhHhHHHHcCCCCCCcccccCCCccEEEEcCC
Q 009282 418 LTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450 (538)
Q Consensus 418 ~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~ 450 (538)
++|.|||+++|++++.|+|++|+.|||+++|.+
T Consensus 332 ~aT~npA~~lg~~~~~G~i~~G~~ADlvv~d~~ 364 (374)
T cd00854 332 MASLNPAKLLGLDDRKGSLKPGKDADLVVLDDD 364 (374)
T ss_pred HHhHHHHHHcCCCCCcCCcCCCCcCCEEEECCC
Confidence 999999999999777999999999999999965
|
This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling. |
| >KOG3968 consensus Atrazine chlorohydrolase/guanine deaminase [Nucleotide transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=242.22 Aligned_cols=360 Identities=18% Similarity=0.176 Sum_probs=227.0
Q ss_pred eeeeEEEeC-CEEEEecCCCCCC----------CCceEEecCCCeeecccccccccccccc----C--------------
Q 009282 69 QIADVYVED-GIVVAVQPNINVG----------DDVKVLDATGKFVMPGGIDPHTHLAMEF----M-------------- 119 (538)
Q Consensus 69 ~~~~V~I~~-grI~~Vg~~~~~~----------~~~~vID~~G~~v~PGlID~H~H~~~~~----~-------------- 119 (538)
++..+.|.+ |+|+.|++..... +..++++.+|.++||||||+|+|....+ .
T Consensus 26 e~~sl~Vd~~GKi~~i~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~mPGfVdtH~H~a~q~~~s~~g~d~pll~wl~~~~ 105 (439)
T KOG3968|consen 26 EGSSLGVDDTGKIVFIGKAYFDENKLKGEGVEKENTKIKLSSGHFLMPGFVDTHIHPAHQFAMSGAGTDMPLLQWLGKYT 105 (439)
T ss_pred cCcceeecCCccEEEeeccccchhhhcccccccccceeeecCCcEEecceeecccchHhhhhhhccccCcHHHHHhhcce
Confidence 466778887 9999999854322 2357899999999999999999942210 0
Q ss_pred ----CCCCh-hhH----HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeee-------eecCChh
Q 009282 120 ----GSETI-DDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-------ITKWDEV 183 (538)
Q Consensus 120 ----~~~~~-~~~----~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 183 (538)
...+. ++. ....+..+++|+||+....+.........++...+.+.+..+.-..+.. .....++
T Consensus 106 f~le~~~~~~e~~~q~~~~vv~~mL~~GTTt~~~f~~~~~~s~~ll~~~~~~~G~R~~igkv~m~~~~~~~p~~~~~~E~ 185 (439)
T KOG3968|consen 106 FPLEATFTNEEDARQVYQRVVKEMLRAGTTTVEYFSTLHLDSELLLARAAIRAGQRALIGKVCMDCNAHAVPKGVETTEE 185 (439)
T ss_pred eecchhhhhHHHHHHHHHHHHHHHHHcCceehhhhhccCchhHHHHHHHHHHhCCceeeeeehhccCCCCCCccchhHHH
Confidence 11122 222 2334567999999998665333334455566666666664443221111 1111222
Q ss_pred hHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEc-CChhhHHHHHHHHHHcCCCCcccc
Q 009282 184 VSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 184 ~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-~~~~~~~~~~~~~~~~g~~~~~~~ 259 (538)
..+..+++.. ..+.......+.+.-...++.+.+....+.|+...+++..|. ++..++........+.
T Consensus 186 si~~t~~~i~~~~~~~~~~~~~~vt~~fa~~c~k~v~~~l~~lak~~~l~~q~hIsen~~EI~~~~~ff~~~-------- 257 (439)
T KOG3968|consen 186 SIESTEDLIPKLEKLKREKVNPIVTPRFAASCSKGVFEELSKLAKYHNLHIQIHISENGKEIEAVKNFFPEK-------- 257 (439)
T ss_pred HHHHHHHHHHHHHhhccCCCCCcccccccCCCcchhHHHHHHHHHhhhhhhhhhhhhcHHHHHHHHHhhhhc--------
Confidence 2222222221 222222211112222345678888888888999999999999 6666666555442211
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
..-..+.+....++....+.|+...++ +.++.++++|..|++||++ +..++++.
T Consensus 258 ----------~~y~~~yd~~~lL~~ktvlaH~~hl~d-~ei~~l~k~g~svshCP~S-------------n~~L~sG~-- 311 (439)
T KOG3968|consen 258 ----------LSYTDVYDKGGLLTEKTVLAHLEHLSD-EEIELLAKRGCSVSHCPTS-------------NSILGSGI-- 311 (439)
T ss_pred ----------ccchHHHHHhcccchHhHhhhheecCc-hhHHHHHhcCCceEECCcc-------------hhhhccCC--
Confidence 112223334555565666777776666 8899999999999999997 44444443
Q ss_pred cCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHH
Q 009282 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~a 419 (538)
.+++++++.|+.+.+|||..+.+....+. .++.+...+....+.-+||++|+|.+|
T Consensus 312 ----------~~vr~lL~~~v~VgLGtDv~~~s~l~a~r--------------~A~~~s~hL~~~~~~~~Ls~~e~L~lA 367 (439)
T KOG3968|consen 312 ----------PRVRELLDIGVIVGLGTDVSGCSILNALR--------------QAMPMSMHLACVLDVMKLSMEEALYLA 367 (439)
T ss_pred ----------ccHHHHHhcCceEeecCCccccccHHHHH--------------HHHHHHHHHHhccCcccCCHHHHHHHH
Confidence 33899999999999999987543322110 022222223222244679999999999
Q ss_pred hHhHHHHcCCCCCCcccccCCCccEEEEcCCCce----eeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE
Q 009282 420 STECARIFNVYPRKGAILVGSDADIIIFNPNSSF----EITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 420 T~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
|+|+|++||+++..|++++||.+|++++|.+.+. .++ ..++......|.|- .+++..|||+|+.|++
T Consensus 368 Ti~GA~aLg~d~~~Gs~eVGK~fDai~id~s~~~~~l~~~~--~~~~lI~~~v~~g~--drni~~V~V~Gk~v~~ 438 (439)
T KOG3968|consen 368 TIGGAKALGRDDTHGSLEVGKYFDAIIIDLSAPESPLYRFS--GHHDLISKVVYNGD--DRNIAEVFVAGKLVKQ 438 (439)
T ss_pred hccchhhccCCCcccceecccccceEEEeCCCCcchhhhcc--chHHHHHHHHhcCC--CCceEEEEEccEEecc
Confidence 9999999999999999999999999999987651 111 01222223355554 4689999999999975
|
|
| >cd01309 Met_dep_hydrolase_C Metallo-dependent hydrolases, subgroup C is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-28 Score=244.19 Aligned_cols=315 Identities=23% Similarity=0.199 Sum_probs=186.1
Q ss_pred CCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCC-------------CC--------hhhHHHHHHHHH
Q 009282 77 DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-------------ET--------IDDFFSGQAAAL 135 (538)
Q Consensus 77 ~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~-------------~~--------~~~~~~~~~~~l 135 (538)
||||++|+++...+.++++||++|++|+|||||+|+|++....+. .+ .+........+.
T Consensus 1 ~gkI~~i~~~~~~~~~~~vid~~g~~v~Pg~id~h~h~~~~~~~~~~~~~d~~e~~~~~~p~~~~~d~~~~~~~~~~~a~ 80 (359)
T cd01309 1 DGKIVAVGAEITTPADAEVIDAKGKHVTPGLIDAHSHLGLDEEGGVRETSDANEETDPVTPHVRAIDGINPDDEAFKRAR 80 (359)
T ss_pred CCEEEEEcCCCCCCCCCeEEeCCCCEEcCcEEecccccCccccCCCcCcCCccccCCCCCceeEeecccCCCCHhHHHHH
Confidence 799999999776676789999999999999999999998752210 00 001123456788
Q ss_pred hCCcEEEecccCCCCC-C-------HHH-HHHHHHHHhcccceeeeee--eeeec-------CCh-hhHHHHHHHH---H
Q 009282 136 AGGTTMHIDFVIPING-S-------LTA-GFEAYEKKAKNSCMDYGFH--MAITK-------WDE-VVSDEMEVMV---K 193 (538)
Q Consensus 136 ~~GvTt~~d~~~~~~~-~-------~~~-~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~-~~~~~~~~~~---~ 193 (538)
++|||++......... . ... ..+... ......+.+.+. ..... .+. .....+++.. +
T Consensus 81 ~~GvT~~~v~p~~~~~~gg~~~~i~~~~~~~~~~~-~~~~~~~~~a~g~~~~~~~~~~~~~p~trmg~~~~lr~~~~~a~ 159 (359)
T cd01309 81 AGGVTTVQVLPGSANLIGGQGVVIKTDGGTIEDMF-IKAPAGLKMALGENPKRVYGGKGKEPATRMGVAALLRDAFIKAQ 159 (359)
T ss_pred hcCceEEEecCCCCCcccceEEEEECCCCCHHHhc-ccCCceeEEecCCCCcccccccCCCccchHHHHHHHHHHHHHHH
Confidence 9999999755422211 0 000 001000 001111111110 00000 000 0011111111 0
Q ss_pred HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHH
Q 009282 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (538)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~ 273 (538)
++.....+ +.+..+........++.++..++.. +++.+|+.... ++.
T Consensus 160 ~y~~~~~~-~~~~~~~~~~~d~~l~~l~~~~~~~-~~v~vHa~~~~-------------------------------~i~ 206 (359)
T cd01309 160 EYGRKYDL-GKNAKKDPPERDLKLEALLPVLKGE-IPVRIHAHRAD-------------------------------DIL 206 (359)
T ss_pred HHHHHhhh-hhhcccCCCCCCccHHHHHHHHcCC-eeEEEEeCCHH-------------------------------HHH
Confidence 11000000 0000000011233455555555433 78888887543 355
Q ss_pred HHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHH
Q 009282 274 RAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353 (538)
Q Consensus 274 ~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~ 353 (538)
++++++.+++.++.+.|+... .+.++++++.|+.++.+|..... ...+. .......+.
T Consensus 207 ~~l~~~~e~g~~~~i~H~~~~--~~~~~~la~~gv~v~~~P~~~~~-~~~~~-------------------~~~~~~~~~ 264 (359)
T cd01309 207 TAIRIAKEFGIKITIEHGAEG--YKLADELAKHGIPVIYGPTLTLP-KKVEE-------------------VNDAIDTNA 264 (359)
T ss_pred HHHHHHHHcCCCEEEECchhH--HHHHHHHHHcCCCEEECcccccc-ccHHH-------------------hhcchhhHH
Confidence 666777778888899999876 37889999999999887764110 00000 001123467
Q ss_pred HHHhcC-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCC
Q 009282 354 AALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 432 (538)
Q Consensus 354 ~~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~ 432 (538)
.++++| ++++++||+...+.. .+......++. .+++.+++|+++|.|||+++|++++
T Consensus 265 ~l~~aGGv~valgsD~~~~~~~---------------------~l~~~~~~a~~-~gl~~~~al~~~T~n~A~~lg~~~~ 322 (359)
T cd01309 265 YLLKKGGVAFAISSDHPVLNIR---------------------NLNLEAAKAVK-YGLSYEEALKAITINPAKILGIEDR 322 (359)
T ss_pred HHHHcCCceEEEECCCCCccch---------------------hHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCCCC
Confidence 888997 999999997532110 11222222333 4599999999999999999999888
Q ss_pred CcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 433 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 433 ~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
+|+|++||.|||||||++++.. ..+|..||++|++||
T Consensus 323 ~G~l~~G~~ADlvv~d~dpl~~--------------------~~~v~~v~i~G~~v~ 359 (359)
T cd01309 323 VGSLEPGKDADLVVWNGDPLEP--------------------TSKPEQVYIDGRLVY 359 (359)
T ss_pred cccCCCCCccCEEEECCCcccc--------------------cCcccEEEECCEEeC
Confidence 9999999999999999885422 247999999999986
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >PRK06846 putative deaminase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=244.57 Aligned_cols=349 Identities=14% Similarity=0.122 Sum_probs=202.6
Q ss_pred cEEEECcEEEcCCC----------ceeeeEEEeCCEEEEecCCCCC-CCCceEEecCCCeeeccccccccccccccCC-C
Q 009282 54 KILIKGGTVVNAHH----------QQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-S 121 (538)
Q Consensus 54 ~~~i~n~~vv~~~~----------~~~~~V~I~~grI~~Vg~~~~~-~~~~~vID~~G~~v~PGlID~H~H~~~~~~~-~ 121 (538)
.+.|+|+++..+.. ....+|+|+||+|++|++.... +.+.++||++|++|+|||||+|+|+...... .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~~id~~g~~v~Pg~iD~H~H~~~~~~~~~ 84 (410)
T PRK06846 5 HYWLTNVRLETGFDYENGVIVQTETALCTLEIQDGKIVAIRPNKQVPDATLPTYDANGLLMLPAFREMHIHLDKTYYGGP 84 (410)
T ss_pred ceEEEeeecCccccccCceecCCceeeEEEEEECCEEEEeecCCCCCCCCCceEeCCCCEEecCEEeeeecccchhhccc
Confidence 35677766643322 2467999999999999986332 2346899999999999999999999764211 1
Q ss_pred C-C------------------h---hhH----HHHHHHHHhCCcEEEecccCCCCC----CHHHHHHHHHHHhcccceee
Q 009282 122 E-T------------------I---DDF----FSGQAAALAGGTTMHIDFVIPING----SLTAGFEAYEKKAKNSCMDY 171 (538)
Q Consensus 122 ~-~------------------~---~~~----~~~~~~~l~~GvTt~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 171 (538)
. . + ... ......++++|+|+++++...... ......+...+.. ..+..
T Consensus 85 ~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~Gtt~~r~~v~~~~~~~~~~~~a~~e~l~e~~--~~v~~ 162 (410)
T PRK06846 85 WKACRPAKTIQDRIELEQKELPELLPTTQERAEKLIELLQSKGATHIRSHCNIDPVIGLKNLENLQAALERYK--DGFTY 162 (410)
T ss_pred hhhcCCcccHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHhCCccEEEEEEeeCcccccchHHHHHHHHHHhh--CcceE
Confidence 0 0 0 001 122344567899999887643222 1111112222211 12221
Q ss_pred eeee-eeec-CChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHH
Q 009282 172 GFHM-AITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRM 248 (538)
Q Consensus 172 ~~~~-~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~-~~~~~~~~~ 248 (538)
+... .... ...+....+.+.. +.|+..++.. .+......+.+.+.++++.|+++|+++++|..+.. .....
T Consensus 163 ~~~a~~~~g~~~~~~~~lL~~al-~~Ga~~i~gl-~p~~~~~~~~~~l~~~~~lA~~~g~~v~~Hv~e~~~~~~~~---- 236 (410)
T PRK06846 163 EIVAFPQHGLLRSNSEPLMREAM-KMGAHLVGGV-DPASVDGAIEKSLDTMFQIAVDFNKGVDIHLHDTGPLGVAT---- 236 (410)
T ss_pred EEEeccCcccCCccHHHHHHHHH-HcCCCEEeCC-CCccCCcCHHHHHHHHHHHHHHhCCCcEEEECCCCChhHHH----
Confidence 1110 0000 0122234455555 6788866633 33333455688999999999999999999985432 11111
Q ss_pred HHcCCCCcccccccCCchHHHHHHHHHHHHHHHcC--CCEEEEeccCH---HH--H-HHHHHHHHcCCcEEEeccccccc
Q 009282 249 IELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSM---DA--M-EEIAKARKAGQRVIGEPVVSGLV 320 (538)
Q Consensus 249 ~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~h~~~~---~~--~-~~i~~~~~~g~~v~~~~~~~~~~ 320 (538)
+.+.++...+.+ .++++.|+... +. . +.++++++.|+.|+.+..
T Consensus 237 -----------------------~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g~~v~~~~~----- 288 (410)
T PRK06846 237 -----------------------IKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQGISITSTVP----- 288 (410)
T ss_pred -----------------------HHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcCCeEEEeCC-----
Confidence 112222222222 27899999753 22 1 225579999998875421
Q ss_pred cCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHH
Q 009282 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 400 (538)
.+.++ +| +++++++|+++++|||....+ + .|++...+...+...
T Consensus 289 ------------~~~g~---~p---------~~~l~~~Gv~v~lGtD~~~~~----------~--~p~~~~d~~~~~~~~ 332 (410)
T PRK06846 289 ------------IGRLH---MP---------IPLLHDKGVKVSLGTDSVIDH----------W--SPFGTGDMLEKANLL 332 (410)
T ss_pred ------------CCCCC---CC---------HHHHHhCCCeEEEecCCCCCC----------C--cCCCCCCHHHHHHHH
Confidence 11111 22 889999999999999964210 0 011111111111111
Q ss_pred HHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEE
Q 009282 401 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEV 480 (538)
Q Consensus 401 ~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 480 (538)
.....-...-+..++|+++|.++ ..++.++.+|+|+|||.|||||+|.+.+.... +. ...+..
T Consensus 333 ~~~~~~~~~~~~~~~l~~~T~~a-~~l~~~~~~G~l~~G~~ADlvlld~~~~~~~~------------~~----~~~v~~ 395 (410)
T PRK06846 333 AELYRWSDERSLSRSLALATGGV-LPLNDEGERVWPKVGDEASFVLVDASCSAEAV------------AR----QSPRTA 395 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHcCCc-cccccCCCccCCCCCCcccEEEEeCCChHHHH------------Hh----cCCceE
Confidence 10000001123557999999985 56887778899999999999999976532111 11 347999
Q ss_pred EEECCEEEEEC
Q 009282 481 TIAGGRVVWEN 491 (538)
Q Consensus 481 V~v~G~~V~~~ 491 (538)
||++|++||..
T Consensus 396 v~~~G~~v~~~ 406 (410)
T PRK06846 396 VFHKGQLVAGS 406 (410)
T ss_pred EEECCEEEeee
Confidence 99999999985
|
|
| >COG3964 Predicted amidohydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.6e-27 Score=210.37 Aligned_cols=311 Identities=18% Similarity=0.263 Sum_probs=199.4
Q ss_pred cccEEEECcEEEcCCCc--eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc-cCCCCChhhHH
Q 009282 52 SSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME-FMGSETIDDFF 128 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~--~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~-~~~~~~~~~~~ 128 (538)
..+++|+|++++++... +..+|.|.||||++++ +.+.|..+++||++|.+|.||+||.|+|.+.. ..+...+
T Consensus 3 qfdiLLt~~rlidpa~g~d~~tniai~ngkIaa~~-d~~apa~tq~Ida~Gc~VspG~iDlHvHvy~ggt~~~v~p---- 77 (386)
T COG3964 3 QFDILLTGGRLIDPARGIDEITNIAIINGKIAAAD-DYPAPAETQIIDADGCIVSPGLIDLHVHVYYGGTEGGVRP---- 77 (386)
T ss_pred ccceeeeCCeecccccccCccceeeeecCeEEecc-CcCCChhheEEccCccEeccCeeeeeeEEecCCCccCcCH----
Confidence 56899999999987643 5679999999999999 67777789999999999999999999999876 1112222
Q ss_pred HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc---ccceeeeeeeeeecCCh------hhHHHHHHHHHHcC--C
Q 009282 129 SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK---NSCMDYGFHMAITKWDE------VVSDEMEVMVKEKG--I 197 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g--~ 197 (538)
......+||||++|.+..+..+.....+...+... ..++++.+.+-. ..+| -..+++.+..++.. .
T Consensus 78 --d~~ga~~GvTTvVDAGSaGaanf~gF~r~vie~Sr~RI~Aflnvs~~Gl~-a~nE~~d~~nid~d~i~aa~reh~d~i 154 (386)
T COG3964 78 --DMYGAPNGVTTVVDAGSAGAANFDGFYRTVIEASRVRIKAFLNVSPPGLT-ASNELYDPDNIDEDKIHAAFREHRDVI 154 (386)
T ss_pred --HHccccCCceEEEecCCcCccchhhHHHHhhcchhheeeeeeeccCccee-eehhhCChhhCCHHHHHHHHHhCcCcE
Confidence 23468899999999976655544444443333332 134443332211 1111 12344555553332 2
Q ss_pred cEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHH
Q 009282 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (538)
Q Consensus 198 ~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l 276 (538)
.++|+-.+......+-..-+....+.|+..++|+++|..++. .+++.++.+
T Consensus 155 vGlKvR~s~~~~g~~GitPl~la~~ia~~~klPlmvHigePp~~~dEvlerL---------------------------- 206 (386)
T COG3964 155 VGLKVRVSTEDIGEYGITPLTLALRIANDLKLPLMVHIGEPPVLMDEVLERL---------------------------- 206 (386)
T ss_pred EEEEEEeeeccccccCCchHHHHHHHHhhcCCceEEecCCCCccHHHHHHhc----------------------------
Confidence 455654443222222333466677788899999999996543 233443332
Q ss_pred HHHHHcCCCEEEEeccCH----------HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCc
Q 009282 277 RLAEFVNTPLYVVHVMSM----------DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346 (538)
Q Consensus 277 ~~~~~~~~~~~~~h~~~~----------~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 346 (538)
...-+++||... .-...+++.+++|+.. +.. |. ...+.
T Consensus 207 ------~~GDIitHcfngkpn~~l~~dg~vr~~vrra~erGV~f--D~g-hG---------------~asfs-------- 254 (386)
T COG3964 207 ------RRGDIITHCFNGKPNTILTDDGVVRAEVRRARERGVIF--DAG-HG---------------RASFS-------- 254 (386)
T ss_pred ------cCCceeeeeccCCCCCccccchhHHHHHHHHHhcceEE--Ecc-CC---------------cceee--------
Confidence 122256676541 1234566677777533 221 10 01111
Q ss_pred ccHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHH
Q 009282 347 GHNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECAR 425 (538)
Q Consensus 347 ~~~~~l~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~ 425 (538)
..-.+.++..|. +..++||-...+. +++-...+...+.++...| +++.++++++|.|||.
T Consensus 255 --f~vAr~aia~GllP~~ISSDlh~~~~----------------~n~Pv~dla~~mSKllalg-mpl~~Vi~avT~npA~ 315 (386)
T COG3964 255 --FNVARRAIANGLLPDIISSDLHTITK----------------LNGPVYDLAWIMSKLLALG-MPLTDVINAVTHNPAV 315 (386)
T ss_pred --HHHHHHHHhcCCCcceeeccceeeee----------------cCchHHHHHHHHHHHHHcC-CcHHHHHHHHhcCHHH
Confidence 012456777776 6788888543321 2233456777777777777 9999999999999999
Q ss_pred HcCCCCCCcccccCCCccEEEEcCC
Q 009282 426 IFNVYPRKGAILVGSDADIIIFNPN 450 (538)
Q Consensus 426 ~lg~~~~~GsI~~Gk~ADlvvld~~ 450 (538)
.+++ +.+|+|+||..|||+||+-.
T Consensus 316 ~i~l-~~~gtLa~G~~aD~tvf~lk 339 (386)
T COG3964 316 LIGL-AEIGTLAPGAFADITVFKLK 339 (386)
T ss_pred HhCc-cccCccCCCcccceEEEEec
Confidence 9999 68999999999999999843
|
|
| >cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=226.57 Aligned_cols=401 Identities=22% Similarity=0.249 Sum_probs=224.7
Q ss_pred EECcEEEcCCCc---eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccccccccccccc--CC-CCChhhHH--
Q 009282 57 IKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEF--MG-SETIDDFF-- 128 (538)
Q Consensus 57 i~n~~vv~~~~~---~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~--~~-~~~~~~~~-- 128 (538)
|+|++|+++... .+++|+|+||+|++|++.. .+.++||++|++|+|||||+|+|+.... .+ ...||+..
T Consensus 1 Ikng~V~d~~~~~~~~~~dI~IedGkIv~Vg~~~---~~~~vID~~G~~VmPGfID~HtH~~gg~~~~~r~~~pe~~~~~ 77 (541)
T cd01304 1 IKNGTVYDPLNGINGEKMDIFIRDGKIVESSSGA---KPAKVIDASGKVVMAGGVDMHSHIAGGKVNVGRILRPEDHRRD 77 (541)
T ss_pred CEEEEEEcCCCcccccccEEEEECCEEEEEccCC---CCCeEEECCCCEEECCeeeeeeCccccccccccccChhhhhcc
Confidence 578999997643 5789999999999998743 2468999999999999999999997651 11 12222221
Q ss_pred --------------------HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee----------e
Q 009282 129 --------------------SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI----------T 178 (538)
Q Consensus 129 --------------------~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 178 (538)
.....+.+-|.||++++..++.. .+. .-.+......++-+...-. .
T Consensus 78 ~~~~~~~~~~~~g~~~pst~~tgy~ya~mGytt~~e~a~~p~~-a~h---~h~e~~~~p~~d~~~~~~~gnn~~~~~~~~ 153 (541)
T cd01304 78 PVPKGALRRAGVGFSVPSTLATGYRYAEMGYTTAFEAAMPPLN-ARH---THEEMADTPILDKGAYPLLGNNWFVLEYLR 153 (541)
T ss_pred ccccccccccCCCccCCCchHhhhHHHhcCcceeecccCCccc-chh---hhHHhccCccccccceEEecchHHHHHHHh
Confidence 11245677899999988766543 111 1222222223332221111 1
Q ss_pred cCChh-hHHHHHHHHHHcCCcEEEEEeeeCC------------------CccCC-HHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 179 KWDEV-VSDEMEVMVKEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 179 ~~~~~-~~~~~~~~~~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
..+.+ ..+.+..+++....-++|+. ++.| .+..+ .+.++.+.++..++|++..+|....
T Consensus 154 ~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~ii~~l~~~~~~lg~ph~iH~h~n 232 (541)
T cd01304 154 DGDMEKLAAYVAWTLKASKGYGIKVV-NPGGTEAWGWGQNVLSLDDPVPYFDITPREILKGLAEANEELGLPHSIHVHCN 232 (541)
T ss_pred cCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCceEEEEccc
Confidence 11222 22333344444455667764 2221 12333 5666777888889998777776422
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCC-----CEEEEecc---C--------HHHHHHHHH
Q 009282 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT-----PLYVVHVM---S--------MDAMEEIAK 302 (538)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-----~~~~~h~~---~--------~~~~~~i~~ 302 (538)
+ .|..+ . .+...+.+++++.... .+|++|+. . .+..+.+..
T Consensus 233 n-----------lg~pg----------n--~~~t~~t~~~~~~~~~~~~~~~~h~tH~qfhsyg~~~~~~~~s~a~~i~~ 289 (541)
T cd01304 233 N-----------LGVPG----------N--YETTLETMKAAEGVKPDPRRQVLHLTHVQFHSYGGTSWRDFESGAERIAD 289 (541)
T ss_pred c-----------CCCCC----------c--HHHHHHHHHHhhcCCCccccceeEeeeeeEEeeccCCcccHhHHHHHHHH
Confidence 1 12211 1 2334555565555543 47888874 1 122355555
Q ss_pred HHHcCCcEEEeccccccc----cCc---------------ccccCCCccccccee---ecCCCCCccc----HHHHHHHH
Q 009282 303 ARKAGQRVIGEPVVSGLV----LDD---------------SWLWHSDFVTAAKYV---MSPPIRASGH----NKALQAAL 356 (538)
Q Consensus 303 ~~~~g~~v~~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~~---~~p~~r~~~~----~~~l~~~l 356 (538)
....+-.|+.+.....+- +.. ....+.....|.+.. +.+......- -..+..++
T Consensus 290 ~~n~~~~it~D~G~v~f~~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~Gvvp~~y~~k~~v~~lqwaiglEl~ll~ 369 (541)
T cd01304 290 YVNANDHVTIDVGQVIFGETTTMTGDGPMQFDLHGLTGLKWVNCDIELETGSGVVPFIYSPKNPVNALQWAIGLELFLLI 369 (541)
T ss_pred HHHcCCCEEEEeCceecCCcEEEEccchhhcccccccCCceeeeeeEeccCCceEEeEecCCCCchHHHHHHHHHHHHHh
Confidence 666676677666543110 000 000011111222211 1111000000 00123455
Q ss_pred hcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchh---hhHHHH--HHHhh--------hcCCCCHHHHHHHHhHhH
Q 009282 357 ATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIE---ERMHLV--WDTMV--------ESGQISVTDYVRLTSTEC 423 (538)
Q Consensus 357 ~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~---~~~~~~--~~~~~--------~~~~ls~~eal~~aT~~~ 423 (538)
+.--++.+.|||+.. .||..-|.-+.-+- .+...+ ....+ -...+|++++++++|.||
T Consensus 370 ~dp~~~~~tTDhPn~---------gpf~~YP~~i~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~reLSLeei~~mtT~nP 440 (541)
T cd01304 370 DDPWKVILTTDHPNG---------GPFTRYPRIIAWLMSKKFRAEEIATLHKWAQDRSALPGIDREYSLYEIAIMTRAGP 440 (541)
T ss_pred CCcceEEeecCCCCC---------CCcccHHHHHHHHhCHHHHHHHHHhcCHHHHhhccccCCCCCCCHHHHHHHHHHHH
Confidence 667789999998744 23432221110000 000000 00000 022379999999999999
Q ss_pred HHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceE
Q 009282 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKY 503 (538)
Q Consensus 424 A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~ 503 (538)
|++||++ +.|+|++|+.|||+|+|.++. .+.++++.+ . ....++|.+||++|++|+++|+++... .|+.
T Consensus 441 AKiLGL~-~kG~L~~G~~ADLvIfD~n~~-~v~~~dl~s-----~---~~~~gkV~~Tiv~GkvVv~dGeiv~~~-~G~~ 509 (541)
T cd01304 441 AKLLGLS-DKGHLGVGADADIAIYDDDPD-QVDPSDYEK-----V---EKAFSRAAYVLKDGEIVVKDGEVVAEP-WGRT 509 (541)
T ss_pred HHHhCCC-CCCccCCCCcCCEEEEeCCcC-ccCchhhcC-----c---eeecCcEEEEEECCEEEEECCEEccCC-CCcE
Confidence 9999994 579999999999999998876 444333221 1 233568999999999999999998754 5777
Q ss_pred eecCC
Q 009282 504 IEMRP 508 (538)
Q Consensus 504 ~~~~~ 508 (538)
+--.+
T Consensus 510 l~~~~ 514 (541)
T cd01304 510 YWVDV 514 (541)
T ss_pred EEEec
Confidence 66553
|
FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen. |
| >COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=212.77 Aligned_cols=344 Identities=18% Similarity=0.209 Sum_probs=207.8
Q ss_pred EEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC----C--CCChhhHHH
Q 009282 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM----G--SETIDDFFS 129 (538)
Q Consensus 56 ~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~----~--~~~~~~~~~ 129 (538)
+|.|++|+..+.+.+++|+|+||+|..|.+.... ...-||++|.+++|||||.|+--...++ | +.....+..
T Consensus 2 ~lsnarivl~D~v~~gsv~i~DG~Ia~i~~g~s~--~~~~~d~eGd~LLPGlIeLHtD~lE~~~~PRPgV~wp~~aAi~a 79 (377)
T COG3454 2 ILSNARIVLEDRVVNGSVLIRDGLIADIDEGISP--LAAGIDGEGDYLLPGLIELHTDNLERFMTPRPGVRWPPIAAILA 79 (377)
T ss_pred ccccceEEeecceeeeeEEEecceEeeeccccCc--ccccccCCCCeecccchhhcchhhhcccCCCCCCCCCchHHHHH
Confidence 5899999999998889999999999999876532 2667999999999999999997554321 1 112222333
Q ss_pred HHHHHHhCCcEEEecccCCCCC--------CHHHHHHHHHHHh--cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcE
Q 009282 130 GQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKA--KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINS 199 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 199 (538)
.-...+.+||||++|...-++. ...+.++...+.. .....+..++..+.-...+.+..+.++........
T Consensus 80 hD~~l~~sGITTv~dal~iGd~~~gg~r~~~~~~midaI~~~~~~g~lradHr~HlRcEvs~~~~l~~~e~~~~~p~v~L 159 (377)
T COG3454 80 HDAQLAASGITTVLDALAIGDVRDGGLRLENLRKMIDAIEEAQAAGRLRADHRLHLRCEVSHPATLPLFEDLMDHPRVKL 159 (377)
T ss_pred hhHHHHhcChhhHHhhhhcCcccCCccchHHHHHHHHHHHHHHhccchhhccceeeeeecCChhHHHHHHHHhcCCCeeE
Confidence 3455689999999987432221 4556666666543 23456677777777777777888888875666677
Q ss_pred EEEEeeeCCC----------------ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccC
Q 009282 200 FKFFMAYKGS----------------FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (538)
Q Consensus 200 ik~~~~~~~~----------------~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (538)
+.++-..+|. ..++++++.+.++.-...... ..........+.+.+.|+.-. .|.
T Consensus 160 iSlMDH~PGQrQf~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~-----y~~~~r~~i~~~c~~rgI~lA-SHD--- 230 (377)
T COG3454 160 ISLMDHTPGQRQFANLEKYREYYQGKRGLSDEEFAEFIEERQALSAR-----YSDPNRQAIAALCRERGIALA-SHD--- 230 (377)
T ss_pred EEecCCCCCcchhhhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh-----cccchHHHHHHHHHHcCCcee-cCC---
Confidence 7665544443 233444444443322111000 001111122222333333211 111
Q ss_pred CchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCC
Q 009282 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (538)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (538)
+++.+.+ +.....| +.+.-. +...+..+..++.|..|..... |.-.|.
T Consensus 231 --DaT~~hV----~es~~~G--v~iAEF--PtT~eAA~asr~~Gm~VlMGAP--------------NivrGg-------- 278 (377)
T COG3454 231 --DATVEHV----AESHGLG--VAIAEF--PTTVEAAKASRELGMQVLMGAP--------------NIVRGG-------- 278 (377)
T ss_pred --cCcHHHH----HHHHhcC--eeEEeC--ccHHHHHHHHHHhCchhhcCCC--------------ceeccC--------
Confidence 1111111 1122222 223222 2334666666777766542211 111100
Q ss_pred CCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhH
Q 009282 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTEC 423 (538)
Q Consensus 344 r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~ 423 (538)
+.....+..++.+.|+.++++||+.|.+.- ...+...-....+++.||++++|.||
T Consensus 279 -SHsGNvsA~ela~~glLDiLsSDY~P~SLl-----------------------~A~F~La~~~~~~~lpqAvalvt~nP 334 (377)
T COG3454 279 -SHSGNVSARELAQHGLLDILSSDYVPASLL-----------------------HAAFRLADLGSNISLPQAVALVTKNP 334 (377)
T ss_pred -CcccchhHHHHHhCCceeeecccCCcHHHH-----------------------HHHHHHhhhhcccCHHHHHHHhccCH
Confidence 112235578899999999999998876422 22221111223358999999999999
Q ss_pred HHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 424 ARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 424 A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
|+++|+ .++|+|+||++||||.+..+.. ...|+.||+.|+.|+
T Consensus 335 A~algl-~DRG~Ia~GlrADlv~v~~~~~----------------------vp~ir~vwr~G~rv~ 377 (377)
T COG3454 335 ARALGL-TDRGRIAPGLRADLVRVRRDGG----------------------VPVIRTVWRAGKRVA 377 (377)
T ss_pred HHhcCC-CcccccccccccceEEEecCCC----------------------CceeeeeeecceecC
Confidence 999999 4899999999999998875533 236899999999874
|
|
| >cd01300 YtcJ_like YtcJ_like metal dependent amidohydrolases | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-28 Score=251.09 Aligned_cols=190 Identities=17% Similarity=0.139 Sum_probs=122.9
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
..++.+.+.++++.|+++|+++++|+.++..+...++.+ +++.......+.++.+.
T Consensus 290 ~~~~~e~l~~~~~~a~~~g~~v~~Ha~gd~~i~~~l~~~------------------------~~~~~~~g~~~~r~~i~ 345 (479)
T cd01300 290 LLISPEELEELVRAADEAGLQVAIHAIGDRAVDTVLDAL------------------------EAALKDNPRADHRHRIE 345 (479)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEecHHHHHHHHHHH------------------------HHHHHhcCCCCCCceee
Confidence 456899999999999999999999998776555444332 11111112235678899
Q ss_pred eccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCC
Q 009282 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (538)
Q Consensus 290 h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~ 369 (538)
|+...+. +.++++++.|+.++.+|.. ............+.. ..... ..+++.+++.|+++++|||++
T Consensus 346 H~~~~~~-~~~~~l~~~gv~~~~~P~~--~~~~~~~~~~~~lg~-~~~~~---------~~p~~~~~~~Gv~v~lGSD~~ 412 (479)
T cd01300 346 HAQLVSP-DDIPRFAKLGVIASVQPNH--LYSDGDAAEDRRLGE-ERAKR---------SYPFRSLLDAGVPVALGSDAP 412 (479)
T ss_pred ecccCCH-HHHHHHHHcCCceEeCccc--ccCchHHHHHhcccH-HHHhc---------CchHHHHHHCCCeeeccCCCC
Confidence 9998886 8999999999887766653 222211111000000 01111 234789999999999999976
Q ss_pred CCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEE
Q 009282 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 446 (538)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvv 446 (538)
..+. ++|..++.++.+....... ......++|++++|+++|.|||+++|+++++|+|++||.|||||
T Consensus 413 ~~~~-------~p~~~~~~av~~~~~~~~~---~~~~~~~ls~~~al~~~T~~~A~~lg~e~~~GsLe~Gk~ADlvv 479 (479)
T cd01300 413 VAPP-------DPLLGIWAAVTRKTPGGGV---LGNPEERLSLEEALRAYTIGAAYAIGEEDEKGSLEPGKLADFVV 479 (479)
T ss_pred CCCC-------CHHHHHHHHheeeCCCCCC---CCCccccCCHHHHHHHHHHHHHHHhccccccccccCCcccceeC
Confidence 4421 1332222111110000000 00133469999999999999999999988999999999999986
|
YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling. |
| >cd01307 Met_dep_hydrolase_B Metallo-dependent hydrolases, subgroup B is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=226.52 Aligned_cols=295 Identities=18% Similarity=0.186 Sum_probs=185.9
Q ss_pred eEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC
Q 009282 72 DVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING 151 (538)
Q Consensus 72 ~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~ 151 (538)
+|+|+||+|++|++....+.+.++||++|++|+|||||+|+|+..+ +....+ ...+.+++.||||++|+......
T Consensus 1 ~i~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~---~~~~~a~~~GvTtvvd~~~~~~~ 75 (338)
T cd01307 1 DVAIENGKIAAVGAALAAPAATQIVDAGGCYVSPGWIDLHVHVYQG--GTRYGD---RPDMIGVKSGVTTVVDAGSAGAD 75 (338)
T ss_pred CEEEECCEEEEccCCCCCCCCCeEEECCCCEEecCeEEeeecCCCC--CcccCC---CHhHHHHcCceeEEEeCCCCCCC
Confidence 5899999999999865433457899999999999999999999876 432222 35778899999999999754443
Q ss_pred CHHHHHHHHHHHhc---ccceeeeeeeeeec--CC---hhhHHHHHHHHH--HcCCcEEEEEeeeCCCccCCHHHHHHHH
Q 009282 152 SLTAGFEAYEKKAK---NSCMDYGFHMAITK--WD---EVVSDEMEVMVK--EKGINSFKFFMAYKGSFMINDELLIEGF 221 (538)
Q Consensus 152 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~--~~g~~~ik~~~~~~~~~~~~~~~l~~~~ 221 (538)
......+...+... ..++++++++.... .. ....+.+.+... ..|..++|.++...+......+.++..+
T Consensus 76 ~~~~~~~~~~~~~~~~v~a~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~e~~~gi~gik~~~~~~~~~~~~~~~l~~~~ 155 (338)
T cd01307 76 NIDGFRYTVIERSATRVYAFLNISRVGLVAQDELPDPDNIDEDAVVAAAREYPDVIVGLKARASKSVVGEWGIKPLELAK 155 (338)
T ss_pred CHHHHHHHHHHhhhceEEEEEeeeccccccccccCChhHCCHHHHHHHHHHCcCcEEEEEEEeecccccccCCcHHHHHH
Confidence 33333444432332 24555554432211 11 111223333332 3588888988765443333445588999
Q ss_pred HHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHH----
Q 009282 222 KRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA---- 296 (538)
Q Consensus 222 ~~A~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~---- 296 (538)
+.|++.|+++.+|+.+... ..+.+ .. . .....+.|+.....
T Consensus 156 ~~a~~~~~pi~vH~~~~~~~~~~~~----------------------------~~---l---~~g~~~~H~~~g~~~~~~ 201 (338)
T cd01307 156 KIAKEADLPLMVHIGSPPPILDEVV----------------------------PL---L---RRGDVLTHCFNGKPNGIV 201 (338)
T ss_pred HHHHHcCCCEEEEeCCCCCCHHHHH----------------------------HH---h---cCCCEEEeccCCCCCCCC
Confidence 9999999999999965432 11111 11 1 11124667765432
Q ss_pred ------HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCC-ceEEeCCCC
Q 009282 297 ------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI-LQLVGTDHC 369 (538)
Q Consensus 297 ------~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv-~~~lgtD~~ 369 (538)
.+.+..+.++|+.+..+... ..+ ....+..+++.|+ +..++||..
T Consensus 202 ~~~~~~~~~~~~~~~~G~~~d~~~G~------------------~~~----------~~~~~~~l~~~G~~~~~lstD~~ 253 (338)
T cd01307 202 DEEGEVLPLVRRARERGVIFDVGHGT------------------ASF----------SFRVARAAIAAGLLPDTISSDIH 253 (338)
T ss_pred CCCCcHHHHHHHHHhCCEEEEeCCCC------------------Cch----------hHHHHHHHHHCCCCCeeecCCcc
Confidence 24566677787654311000 000 0122456778887 568999964
Q ss_pred CCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcC
Q 009282 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 449 (538)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~ 449 (538)
.... . .+....+...++.+.. .+++++++++++|.|||++|++ +++|+|++|+.|||++++.
T Consensus 254 ~~~~---------~-------~~p~~~l~~~l~~l~~-~gi~~ee~~~~~T~NpA~~lgl-~~~G~l~~G~~ad~~v~~~ 315 (338)
T cd01307 254 GRNR---------T-------NGPVYALATTLSKLLA-LGMPLEEVIEAVTANPARMLGL-AEIGTLAVGYDADLTVFDL 315 (338)
T ss_pred ccCC---------C-------CCccccHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCC-CCCCccCCCCcCCEEEEeC
Confidence 2110 0 0112223444444433 4699999999999999999999 6799999999999999986
Q ss_pred CC
Q 009282 450 NS 451 (538)
Q Consensus 450 ~~ 451 (538)
+.
T Consensus 316 ~~ 317 (338)
T cd01307 316 KD 317 (338)
T ss_pred CC
Confidence 53
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=224.42 Aligned_cols=398 Identities=22% Similarity=0.228 Sum_probs=215.4
Q ss_pred EEEECcEEEcCCCc---eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc--cCC-CCChhhHH
Q 009282 55 ILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME--FMG-SETIDDFF 128 (538)
Q Consensus 55 ~~i~n~~vv~~~~~---~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~--~~~-~~~~~~~~ 128 (538)
++|+|++|+++... +.++|+|+||+|++|++... .+.++||++|++|+|||||+|+|+..+ +.+ ...++++.
T Consensus 2 ~iIkng~I~dp~~~~~~~~~dI~IedGkIveIg~~~~--~~~eVIDa~G~vVmPGfID~HvHg~gG~~~~~R~~~pE~~~ 79 (556)
T TIGR03121 2 ILIKNGTVYDPANGIDGEVMDIFIRDGKIVEPVSGGT--KPAKVIDASGKLVMAGGVDSHTHIAGPKVNVGRLLRPEDHR 79 (556)
T ss_pred EEEEeEEEEcCCCCccccccEEEEECCEEEEecCCCC--CCCeEEECCCCEEEeCEEeeeECCCccccccccccCHHHHh
Confidence 68999999998643 35899999999999986533 246899999999999999999999874 111 12233332
Q ss_pred H----------------------HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee---------
Q 009282 129 S----------------------GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI--------- 177 (538)
Q Consensus 129 ~----------------------~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 177 (538)
. ....+++.|+||++|+..++.. .+.. -.+......++-+...-.
T Consensus 80 ~~~~~~~~~~r~Gtt~~lPTt~tt~y~ya~mGyTt~~eaa~~p~~-arh~---h~e~~~~p~~d~~~~~~~gnn~~~~~~ 155 (556)
T TIGR03121 80 RDPEPRTGLTRAGSGFSVPSTYATGYRYARMGYTTVFEAAVPPLN-ARHT---HEEFADTPILDKGGYTLLGNNWFLLEY 155 (556)
T ss_pred hcchhhhhhcCCCcceEehhHhHHHHHHHhCCccEEecCCCCccc-hhhh---HHHhccCccccccceEEecchHHHHHH
Confidence 1 2245678999999998766543 1222 222222222332221111
Q ss_pred -ecCChh-hHHHHHHHHHHcCCcEEEEEeeeCC------------------CccCC-HHHHHHHHHHHHhcCCe--EEEE
Q 009282 178 -TKWDEV-VSDEMEVMVKEKGINSFKFFMAYKG------------------SFMIN-DELLIEGFKRCKSLGAL--AMVH 234 (538)
Q Consensus 178 -~~~~~~-~~~~~~~~~~~~g~~~ik~~~~~~~------------------~~~~~-~~~l~~~~~~A~~~g~~--v~~H 234 (538)
...+.+ ....+..+++....-++|+. ++.| .+..+ .+.++.+.++..++|+| +++|
T Consensus 156 ~~~~~~~~~~~~vaw~l~~tk~~giK~v-npgG~~a~~~~~~~~~~d~~~~~~~vtp~~i~~~l~~~~e~l~lph~~h~H 234 (556)
T TIGR03121 156 LKDGEPEKAAAYVAWLLKATKGYGIKVV-NPGGVEAWGWGENVLSLDDPVPYFGITPREIIKGLARANEELGLPHSIHVH 234 (556)
T ss_pred HhcCCHHHHHHHHHHHHHhccceEEEEE-CCCchhhhccCCccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEe
Confidence 111222 22333344444455667764 2221 12334 46666777778888986 5555
Q ss_pred cCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCC------EEEEeccC-----------HHHH
Q 009282 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP------LYVVHVMS-----------MDAM 297 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~------~~~~h~~~-----------~~~~ 297 (538)
+.+. |..+ .. +...+.++..+ |.+ +|++|... .+..
T Consensus 235 ~nnl-------------g~pg----------n~--~~t~~t~~~~~--g~~~~~~~~~h~tH~qf~syg~~~~~~f~s~a 287 (556)
T TIGR03121 235 CNNL-------------GVPG----------NY--ETTLDTLDAAE--GVKPNRNQVLHLTHVQFHSYGGTSWRDFESGA 287 (556)
T ss_pred cCCC-------------CCCC----------ch--HHHHHHHHHhc--CCCCCccceeEeeeeeeeccCCCCCCCcchhH
Confidence 5442 2221 11 11222233222 333 67777631 1112
Q ss_pred HHHHHHHHcCCcEEEecccccc----ccC---------------cccccCCCcccccce---eecCCCCCcccHH----H
Q 009282 298 EEIAKARKAGQRVIGEPVVSGL----VLD---------------DSWLWHSDFVTAAKY---VMSPPIRASGHNK----A 351 (538)
Q Consensus 298 ~~i~~~~~~g~~v~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~~---~~~p~~r~~~~~~----~ 351 (538)
+.+...-..+-.|+.+...-.+ .+. +....+...+.++++ .+.+......-+= .
T Consensus 288 ~~~a~~vn~~~~~t~d~Gqv~fg~t~tmt~d~~~~~~~~~~~~~kw~~~d~e~e~g~gvvp~~y~~~~~v~~~qwaigle 367 (556)
T TIGR03121 288 EKIADYVNANPNVTIDVGQVTFGETTTMTADGPMEYDLHKLTGLKWANKDVELETGSGVVPFKYSPKNPVHALQWAIGLE 367 (556)
T ss_pred HHHHHHHhcCCCEEEEeCceecCCceEEeccchhhhhcccCCCCceeeeeeecccCCceEEeeecCCCcchHHHHHHhhH
Confidence 3343444444445544432111 000 000011111122111 1111110000011 1
Q ss_pred HHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhh--hHHHHH---HHhh--------hcCCCCHHHHHHH
Q 009282 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE--RMHLVW---DTMV--------ESGQISVTDYVRL 418 (538)
Q Consensus 352 l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~--~~~~~~---~~~~--------~~~~ls~~eal~~ 418 (538)
+..+.+.--++.+.|||+.. +||..-|.=+.-+-. .....+ .+.+ -...+|++|++++
T Consensus 368 l~Ll~~dp~~~~~ttDhPng---------gpf~~YP~ii~~lm~~~~r~~~~~~~~~~~~~~~~l~~~~Re~sL~EI~~m 438 (556)
T TIGR03121 368 LFLLIKDPWRVFLTTDHPNG---------GPFTRYPRIIALLMSRKYREDMLSTVHPWAAARSTLGGIDREYSLYEIAIM 438 (556)
T ss_pred HHHhcCCcceeEEeccCCCC---------CcccchHHHHHHHcCHHHHHHHHHhcCHHHHhhcccccccCCCCHHHHHHH
Confidence 22344567789999998744 355433321111000 000111 0000 1345999999999
Q ss_pred HhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 419 TSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 419 aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
+|.+||++||+. ++|+|++|+.|||+|+|.++....+ ....+.. ....+.+||++|++|+++|+++...
T Consensus 439 tTanPAkaLGL~-dkG~L~pGa~ADIaI~D~~~~~~~~--------~~~~v~~--~~~~v~~Tik~G~vV~~dGei~~~~ 507 (556)
T TIGR03121 439 TRAGPAKLLGLT-DRGHLGVGADADIAVYDINPDDVDT--------DYADVEK--AFSTALYVFKDGEIVVKDGEIVETP 507 (556)
T ss_pred HHHHHHHHhCCC-CCCCcCCCCcCCEEEEeCcccccCC--------chHHHhh--ccCCccEEEECCEEEEECCEEccCC
Confidence 999999999994 5799999999999999976543211 0111111 1356899999999999999999876
Q ss_pred CCceEeecC
Q 009282 499 GSGKYIEMR 507 (538)
Q Consensus 499 ~~~~~~~~~ 507 (538)
.|+.+--+
T Consensus 508 -~G~~~~~~ 515 (556)
T TIGR03121 508 -WGRTYWVD 515 (556)
T ss_pred -CCcEEEEe
Confidence 67776543
|
Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably. |
| >TIGR00856 pyrC_dimer dihydroorotase, homodimeric type | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=222.60 Aligned_cols=326 Identities=14% Similarity=0.130 Sum_probs=240.1
Q ss_pred eeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-cc--ceeeeeeeee
Q 009282 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NS--CMDYGFHMAI 177 (538)
Q Consensus 102 ~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~--~~~~~~~~~~ 177 (538)
+.+|-=-|+|+|+-+. .+.....-+...|||++++|....+. ...+.++....... .. .+++.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~vt~vv~mPnt~P~~~~~e~~~~~~~~~~~~s~~~vDf~~~~~v 73 (341)
T TIGR00856 2 LTIRRPDDWHLHLRDG--------AMLKAVLPYTSEIFSRAIVMPNLAPPVTTVEAAVAYRERILDAVPAGHDFTPLMTL 73 (341)
T ss_pred ceecCccceeeeccCc--------hHHHHHHHHHHhhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCcceEEEEEE
Confidence 4567778999999876 33333445677889999998654333 23445555444433 33 3578877777
Q ss_pred ecCChhhHHHHHHHHHHcCCcEEEEEeeeC----CCccCCHHHHHHHHHHHHhcCCeEEEEcCChh-hHHHHHHHHHHcC
Q 009282 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGD-AVFEGQKRMIELG 252 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~-~~~~~~~~~~~~g 252 (538)
.........++..+.+..|+.++|+|.... +....+...+.++++.+++.|+++.+|+++.. ....
T Consensus 74 ~~~~~~~~~Ei~~l~~~~Gv~g~Klf~~~~~~~~~~~v~dd~~l~~~~e~~~e~g~~v~vHaEd~~~~i~~--------- 144 (341)
T TIGR00856 74 YLTDSLTPEELERAKNEGVVRAVKLYPAGATTNSSHGVTDIDAIMPVLEAMEKIGLPLLLHGEVTHGDIDI--------- 144 (341)
T ss_pred ECCCCCCHHHHHHHHHcCCeEEEEEccCCcccCCCcCCCCHHHHHHHHHHHHHcCCeEEEeecCCCCCccc---------
Confidence 555544567888877445999999986422 11223458899999999999999999998752 1100
Q ss_pred CCCcccccccCCchHHHHHHH-HHHHHHH-HcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCC
Q 009282 253 ITGPEGHALSRPPLLEGEATT-RAIRLAE-FVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~-~~l~~~~-~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (538)
...+...+. .+..++. ..+.++++.|+++...++.+.+.+. .|++++++||+.++++.+....
T Consensus 145 ------------~~~e~~a~~~~i~~lA~~~~~~~~~i~H~st~~~~~~i~~a~~---~vt~E~~ph~L~l~~~~~~~~~ 209 (341)
T TIGR00856 145 ------------FDREARFIESVLEPLRQRFPALKVVLEHITTKDAIDYVEDGNN---RLAATITPQHLMFTRNDLLGGG 209 (341)
T ss_pred ------------ccchhhhhHHHHHHHHHHccCCeEEEEecCcHHHHHHHHHcCC---CEEEEEcHHHHhccHHHHhccC
Confidence 000122233 3334554 4589999999999888777765533 3999999999999998764311
Q ss_pred cccccceeecCCCCCcccHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCC
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQ 409 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ 409 (538)
.+..++++||+|..++++++|+++..|... .++|||+|++...|.. + .+++|++|++..++..+. .++. +
T Consensus 210 --~~~~~k~~PPlR~~~d~~aL~~~l~~G~id~~i~SDHaP~~~~~K~~---~--~~~~G~~g~e~~l~~~~~-~~~~-~ 280 (341)
T TIGR00856 210 --VNPHLYCLPILKRNIHQQALLELAASGFPKFFLGTDSAPHARHRKES---S--CGCAGCFSAPTALPSYAE-VFEE-M 280 (341)
T ss_pred --CCCceEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChhHcCC---C--CCCCCcccHHHHHHHHHH-HHhc-C
Confidence 246799999999999999999999999999 6999999999877742 2 478999999999998773 4444 6
Q ss_pred CCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccC-CeEEeeEE
Q 009282 410 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE-GRRVKGKV 478 (538)
Q Consensus 410 ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v 478 (538)
++++++++..+.|||+++|+ +. | .|||+|+ +..+.++.+++.++..|+||+ |..+..+|
T Consensus 281 ~~l~~~v~~~s~nPAk~~gl-~~-~------dAdi~~~--~~~~~i~~~~~~s~~~~sp~~~~~~~~~~v 340 (341)
T TIGR00856 281 NALENLEAFCSDNGPQFYGL-PV-N------STKIELV--KKEQQIPESIALTDDTLVPFRAGETLSWSV 340 (341)
T ss_pred CCHHHHHHHHhHhHHHHhCC-CC-C------CceEEEE--eccEEeCchhccCCCCcccccCCcccceee
Confidence 99999999999999999999 43 4 8999999 578999999999999999995 44433333
|
This homodimeric form of dihydroorotase is less common in microbial genomes than a related dihydroorotase that appears in a complex with aspartyltranscarbamoylase or as a homologous domain in multifunctional proteins of pyrimidine biosynthesis in higher eukaryotes. |
| >TIGR03583 EF_0837 probable amidohydrolase EF_0837/AHA_3915 | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-25 Score=220.30 Aligned_cols=334 Identities=21% Similarity=0.230 Sum_probs=185.0
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCC-CeeeccccccccccccccCCCCChhhHHHHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G-~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~ 132 (538)
+++|+|++|+++. ..+|+|+||||++|++....+ +.++||++| ++|+|||||+|+|+..+ +....++. ..
T Consensus 2 ~~~i~n~~i~~~~---~~~v~i~~g~I~~v~~~~~~~-~~~~iD~~g~~~l~PG~ID~H~H~~~~--~~~~~~~~---~~ 72 (365)
T TIGR03583 2 DLLIKNGRTVNGT---PVDIAIEDGKIAAVGTTITGS-AKQTIDLEGETYVSAGWIDDHTHCFPK--SALYYDEP---DE 72 (365)
T ss_pred cEEEECcEEecCC---eeEEEEECCEEEEecCCCCCC-CCeEEECCCCeEEecCEEEeeeccCCC--cccccCCH---hH
Confidence 5899999999863 459999999999998754322 468999999 99999999999999754 22223333 23
Q ss_pred HHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc-cc--ceeeeeeeeeec-----CChhhHHHHHHHHHHc--CCcEEEE
Q 009282 133 AALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NS--CMDYGFHMAITK-----WDEVVSDEMEVMVKEK--GINSFKF 202 (538)
Q Consensus 133 ~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--g~~~ik~ 202 (538)
.++++|||+++++............+.. +... +. .++....+..+. ......++++++.... +..++|.
T Consensus 73 ~a~~~GvTt~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~vv~~~~ 151 (365)
T TIGR03583 73 IGVKTGVTTVVDAGSTGADDIDDFYRLA-QQAKTNVFALLNISRIGLVAQDELADLSNLDASAVKQAVERYPDFIVGLKA 151 (365)
T ss_pred hhhcCceeEEEeCCCCCCCCHHHHHHHH-HhhCCcEEEEeeehhccccChhhhhChHHhHHHHHHHHHHhCcCcEEEEEE
Confidence 4688999999987542222233333322 2222 21 121111111111 1122344455444222 2455566
Q ss_pred EeeeC--CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHH
Q 009282 203 FMAYK--GSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (538)
Q Consensus 203 ~~~~~--~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~ 279 (538)
+++.. +....+...+.+.+..+ +.++++.+|+.+... ..+..+. ...
T Consensus 152 ~~t~~~i~E~gl~~~~~~~~l~~~-~~~~pv~vH~~~a~~~~~~i~~~-~~~---------------------------- 201 (365)
T TIGR03583 152 RMSKSVVGDNGIEPLEIAKQIQQE-NLELPLMVHIGSAPPELDEILAL-MEK---------------------------- 201 (365)
T ss_pred eecccccccCCcCHHHHHHHHHHh-cCCCcEEEEeCCCccCHHHHHHH-hcC----------------------------
Confidence 66532 12223355555555544 789999999976532 2222211 111
Q ss_pred HHcCCCEEEEeccCHHH----------HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccH
Q 009282 280 EFVNTPLYVVHVMSMDA----------MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHN 349 (538)
Q Consensus 280 ~~~~~~~~~~h~~~~~~----------~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 349 (538)
+ . .+.|+.+... .+.+......|+.+... |+.. .+ ..
T Consensus 202 ---g-~-~~~H~fng~~~~~~r~~g~~~~~~~~~l~~G~i~d~~---hg~~---------------~~----------~~ 248 (365)
T TIGR03583 202 ---G-D-VLTHCFNGKPNGILRETGEVKPSVLEAYNRGVILDVG---HGTA---------------SF----------SF 248 (365)
T ss_pred ---C-C-eeeeeecCCCCCCCCCcchHHHHHHHHHhCeEEEEeC---CCCC---------------Cc----------hH
Confidence 1 1 3566543321 13333344455433221 0000 00 00
Q ss_pred HHHHHHHhcCC-ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 350 KALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 350 ~~l~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
.....+...++ .++.++|... ....++....+...+++++.. |++++++++++|.|||++||
T Consensus 249 ~~~~~~~~~~~~~~td~~d~~~----------------~~~~~gp~~~l~~~~~~~~~~-g~~~~ea~~~~t~npa~~~g 311 (365)
T TIGR03583 249 HVAEKAKRAGIFPDTISTDIYI----------------RNRINGPVYSLATVMSKFLAL-GYSLEEVIEKVTKNAAEILK 311 (365)
T ss_pred HHHHHHHhCCCCCccccccccc----------------CCCccCccccHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhC
Confidence 11223333342 2333444210 011233334466666666654 69999999999999999999
Q ss_pred CCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEe----eEEEEEEECCEEE
Q 009282 429 VYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVK----GKVEVTIAGGRVV 488 (538)
Q Consensus 429 ~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~V~v~G~~V 488 (538)
++ +.|+|++|+.|||++||.+..... +. -..|.... -.++.|+++|+..
T Consensus 312 l~-~~g~i~~g~~ad~~~~~~~~~~~~----~~------~~~g~~~~~~~~~~~~~~~~~~~~~ 364 (365)
T TIGR03583 312 LT-QKGRLQEGYDADLTIFTVKAEPKK----LT------DSEGDSRIAEEQIKPLAVIIGGEYY 364 (365)
T ss_pred CC-CCCCcCCCCcccEEEEecCCCCce----ee------cCCCCEEEeccccceEEEEECCEEe
Confidence 95 479999999999999997543211 11 12222222 2467889999864
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. |
| >PRK05451 dihydroorotase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=215.20 Aligned_cols=324 Identities=16% Similarity=0.163 Sum_probs=226.0
Q ss_pred eeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-c--cceeeeeeeee
Q 009282 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-N--SCMDYGFHMAI 177 (538)
Q Consensus 102 ~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 177 (538)
+-+|=-||+|+|+-.. .+..++ ....++++|++++|....+. ...+.++....... . ..+++.++...
T Consensus 5 ~~~~~~~d~h~hl~~~----~~~~~~----~~~~~~~~t~~v~mPnt~P~~~~~~~l~~~~~~a~~~~~~~~d~~~~~~i 76 (345)
T PRK05451 5 LTIRRPDDWHLHLRDG----AMLKAV----VPYTARQFGRAIVMPNLVPPVTTVAQALAYRERILAALPAGSNFEPLMTL 76 (345)
T ss_pred EEecCcceEEEecCCc----hHHHHH----HHHHHHhcCEEEECCCCCCCCCCHHHHHHHHHHHHhhCCCCCcEEEEEEE
Confidence 4467889999999753 222233 33445779999998643222 23444444444332 2 22455555555
Q ss_pred ecCChhhHHHHHHHHHHcC-CcEEEEEeeeCC----CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcC
Q 009282 178 TKWDEVVSDEMEVMVKEKG-INSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g-~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g 252 (538)
.....+..+++.++. +.| ..++|+|..+.+ ....+.+.+.++++.+.++|+++.+|+++........
T Consensus 77 ~~~~~~~~~El~~~~-~~Gvv~g~Kl~~~~~~~~~~~~~~dd~~l~~~~e~~~~~g~~V~vHaE~~~~~~~~~------- 148 (345)
T PRK05451 77 YLTDNTDPDELERAK-ASGVVTAAKLYPAGATTNSDAGVTDIEKIYPVLEAMQKLGMPLLVHGEVTDPDIDIF------- 148 (345)
T ss_pred EeCCCCCHHHHHHHH-HCCCEEEEEEecccCccCCccCcCCHHHHHHHHHHHHHcCCEEEEecCCCCcccccc-------
Confidence 443334467787776 779 459999976421 1123678899999999999999999998743200000
Q ss_pred CCCcccccccCCchHHHHHHHHH-HHHHHHc-CCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCC
Q 009282 253 ITGPEGHALSRPPLLEGEATTRA-IRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~-l~~~~~~-~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (538)
..+...+.+. ..++... +.++++.|+++...++.+++ .+..|++++|+|||.++++.+...+
T Consensus 149 -------------~~e~~~~~~~l~~lA~~~pg~~lhI~Hlst~~~~e~i~~---a~~~it~Et~ph~L~l~~~~~~~~~ 212 (345)
T PRK05451 149 -------------DREAVFIDRVLEPLRRRFPKLKIVFEHITTKDAVDYVRE---ANDNLAATITPHHLLINRNDMLVGG 212 (345)
T ss_pred -------------cchHHHHHHHHHHHHHhcCCCcEEEEecCcHHHHHHHHh---cCCCEEEEecHHHHhcCHHHHhCCC
Confidence 0012334343 4477566 99999999999776665543 3678999999999999988764322
Q ss_pred cccccceeecCCCCCcccHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCccCcccCCCCCcchhh---hHHHHHHHhhh
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE---RMHLVWDTMVE 406 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~---~~~~~~~~~~~ 406 (538)
.+..++++||+|...+++++|+++..|... +++|||+|++..+|. .++|.+|++. .++.... ++.
T Consensus 213 --~~~~~k~~PPLR~~~d~~aLw~~l~~G~Id~~i~SDHaP~~~~~K~--------~~~G~~gi~~~~~g~~~~~~-~~~ 281 (345)
T PRK05451 213 --IRPHLYCLPILKRETHRQALREAATSGNPKFFLGTDSAPHARHAKE--------SACGCAGIFSAPAALELYAE-VFE 281 (345)
T ss_pred --cCCCeEEeCCCCCHHHHHHHHHHHHcCCCCEEEeCCCCCCChHHhC--------CCCCCCchhhHHHHHHHHHH-HHH
Confidence 236689999999999999999999999999 899999999987764 2345445444 3344443 233
Q ss_pred cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccC-CeEEeeEEE
Q 009282 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE-GRRVKGKVE 479 (538)
Q Consensus 407 ~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~ 479 (538)
.+ .+++++++..+.|||++||+..++|+|.+| +..|.++.+.+.++..++||+ |..+..+|+
T Consensus 282 ~~-~~l~~~v~~~s~nPAkifGl~~~KG~i~~~----------~~~~~v~~~~~~s~~~~sp~~~~~~~~~~~~ 344 (345)
T PRK05451 282 EA-GALDKLEAFASLNGPDFYGLPRNTDTITLV----------REPWTVPESIPFGDETVVPFRAGETLRWSVK 344 (345)
T ss_pred cC-CCHHHHHHHHhHHHHHHhCCCCCCCeEEEE----------ecceecCcccccCCCceeeecCCceeeeEec
Confidence 44 499999999999999999998889999887 678899988999999999994 555555543
|
|
| >cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.7e-24 Score=218.20 Aligned_cols=282 Identities=22% Similarity=0.258 Sum_probs=183.4
Q ss_pred ecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCC-CCCCHHHHHHHHHHHhcccceeeeeee
Q 009282 97 DATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGFHM 175 (538)
Q Consensus 97 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (538)
|++|++|+|||||+|+|+..+ + .+++. ..+.++.+||||++++... ......+.++...+...+..+++.+..
T Consensus 1 Da~G~~v~PG~ID~H~Hi~~~--~-~~~~~---~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 1 DAEGKYIVPGFIDAHLHIESS--M-LTPSE---FAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CCCCCEEccCEEEccCCcCCC--C-CChHH---HHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 789999999999999999876 2 23433 3778999999999986422 222455666666665555555554333
Q ss_pred ee----ecC--Chh--hHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009282 176 AI----TKW--DEV--VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (538)
Q Consensus 176 ~~----~~~--~~~--~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~ 247 (538)
+. +.. ++. ..++++++.+..++.+++.++++++. ..+.+.+.+.++.|+++|+++.+|+..... ..+..
T Consensus 75 p~~vp~t~~e~~g~~~~~~~i~~l~~~~~vvglgE~md~~~v-~~~~~~l~~~i~~A~~~g~~v~~Ha~g~~~--~~L~a 151 (422)
T cd01295 75 PSCVPATPFETSGAELTAEDIKELLEHPEVVGLGEVMDFPGV-IEGDDEMLAKIQAAKKAGKPVDGHAPGLSG--EELNA 151 (422)
T ss_pred CCcCCCCCCCCCCCcCCHHHHHHHhcCCCCcEEEEeccCccc-cCCcHHHHHHHHHHHhCCCEEEEeCCCCCH--HHHHH
Confidence 22 111 112 36778777755689999988887653 336778999999999999999999976542 22222
Q ss_pred HHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCccccc
Q 009282 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (538)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~ 327 (538)
+.+.|.. ..|.....+ +.++++ +.|+.+...+...
T Consensus 152 ~l~aGi~---------------------------------~dH~~~~~e-ea~e~l-~~G~~i~i~~g~~---------- 186 (422)
T cd01295 152 YMAAGIS---------------------------------TDHEAMTGE-EALEKL-RLGMYVMLREGSI---------- 186 (422)
T ss_pred HHHcCCC---------------------------------CCcCCCcHH-HHHHHH-HCCCEEEEECccc----------
Confidence 2222321 236555443 555554 6887765442210
Q ss_pred CCCcccccceeecCCCCCcccHHHHHHHHh--cCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh
Q 009282 328 HSDFVTAAKYVMSPPIRASGHNKALQAALA--TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405 (538)
Q Consensus 328 ~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~--~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~ 405 (538)
..+...+...+. .+.+++++||....++.. . ...+....+...
T Consensus 187 ------------------~~~~~~~~~~l~~~~~~~i~l~TD~~~~~~~~-----------~------~g~~~~v~r~a~ 231 (422)
T cd01295 187 ------------------AKNLEALLPAITEKNFRRFMFCTDDVHPDDLL-----------S------EGHLDYIVRRAI 231 (422)
T ss_pred ------------------HhhHHHHHHhhhhccCCeEEEEcCCCCchhhh-----------h------cchHHHHHHHHH
Confidence 000111222222 478999999974221110 0 012223333333
Q ss_pred hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECC
Q 009282 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 485 (538)
Q Consensus 406 ~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G 485 (538)
.. ++++++|++++|.|||+++|+ +++|+|+||+.|||++++... ..+|..||++|
T Consensus 232 ~~-g~s~~eal~~aT~n~A~~~gl-~~~G~i~~G~~AD~vv~~~~~-----------------------~~~v~~v~~~G 286 (422)
T cd01295 232 EA-GIPPEDAIQMATINPAECYGL-HDLGAIAPGRIADIVILDDLE-----------------------NFNITTVLAKG 286 (422)
T ss_pred Hc-CCCHHHHHHHHhHHHHHHcCC-CCCcccCCCCcCCEEEECCCC-----------------------CCceEEEEECC
Confidence 44 599999999999999999999 778999999999999998311 23689999999
Q ss_pred EEEEECC
Q 009282 486 RVVWEND 492 (538)
Q Consensus 486 ~~V~~~~ 492 (538)
+.||+.-
T Consensus 287 ~~v~~r~ 293 (422)
T cd01295 287 IAVVERH 293 (422)
T ss_pred eEEEEec
Confidence 9999864
|
This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea. |
| >COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=200.32 Aligned_cols=356 Identities=17% Similarity=0.205 Sum_probs=223.5
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC----------CCCceEEecCCCeeeccccccccccccccCCC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV----------GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~----------~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~ 121 (538)
..|++|+|+.|+|-.++..+||-|+||||.+||..... .+++++|.++|++|+.|-||+|+|+..+
T Consensus 66 ~~D~VITNa~IiD~~Gi~KADiGikdGrI~~IGKaGNPd~~dgV~iiiG~sTe~iagEg~I~TAGGiDtHiHfI~P---- 141 (568)
T COG0804 66 ALDLVITNALIIDYWGIVKADIGIKDGRIAGIGKAGNPDIMDGVTIIIGPSTEIIAGEGKIVTAGGIDTHIHFICP---- 141 (568)
T ss_pred cccEEEeeeEEEeccceEEeecccccceEEEeecCCCCCccCCceEEeccccceecCCceEEeeccccceeEEecH----
Confidence 46899999999999999999999999999999873321 2368899999999999999999999876
Q ss_pred CChhhHHHHHHHHHhCCcEEEecccCCCCC--------CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHHH
Q 009282 122 ETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK 193 (538)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (538)
+....++++||||++.-+..+.. ...-.+....+.....++++++..-..... ...+.+..
T Consensus 142 -------qqi~~Al~sGiTtmiGGGtGpa~Gt~aTT~TpG~w~i~rMl~a~d~~p~N~g~lgKGn~s~---~~~L~Eqi- 210 (568)
T COG0804 142 -------QQIEEALASGITTMIGGGTGPADGTNATTCTPGPWHIARMLQAADGLPMNIGFLGKGNASN---PAPLAEQI- 210 (568)
T ss_pred -------HHHHHHHhcCcEEEecCccCCCCCcccccccCCHHHHHHHHHhhhcCceeeEEeecCCCCC---chhHHHHH-
Confidence 23677899999999955432221 345556666667777888988876443332 33455556
Q ss_pred HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHH
Q 009282 194 EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATT 273 (538)
Q Consensus 194 ~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~ 273 (538)
+.|+.++|+--+ +..++..+...+..|.+++.++.+|..+.++.....+.+
T Consensus 211 ~aGa~GlKlHED----WG~TpaaI~~~L~VAD~~DvqVaiHtDTLNEsGfvEdTi------------------------- 261 (568)
T COG0804 211 EAGAIGLKLHED----WGATPAAIDTCLSVADEYDVQVAIHTDTLNESGFVEDTI------------------------- 261 (568)
T ss_pred hhccceeEeecc----cCCCHHHHHHHHhhhhhhceEEEEeecccccccchHhHH-------------------------
Confidence 779999998655 456899999999999999999999996654422121111
Q ss_pred HHHHHHHHcCCCEEEEeccCHH---HHHHHHHHHHcCC-cEEEeccccc---------------cccCcccccCCCcccc
Q 009282 274 RAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARKAGQ-RVIGEPVVSG---------------LVLDDSWLWHSDFVTA 334 (538)
Q Consensus 274 ~~l~~~~~~~~~~~~~h~~~~~---~~~~i~~~~~~g~-~v~~~~~~~~---------------~~~~~~~~~~~~~~~~ 334 (538)
+...|.-+|..|...+. ..+.++.....++ +-+..|...+ .++++..-++..|.
T Consensus 262 -----~A~~gRtIHtyHtEGAGGGHAPDiikv~~~~NvLPsSTNPT~PytvNT~~EhlDMlMVcHhL~p~ipeDvaFA-- 334 (568)
T COG0804 262 -----AAIKGRTIHTYHTEGAGGGHAPDIIKVAGQPNVLPSSTNPTRPYTVNTIDEHLDMLMVCHHLDPRIPEDVAFA-- 334 (568)
T ss_pred -----HHhcCceeEEeeccCCCCCCccHHHHHccCCCcCcCCCCCCCCcccccHHHhhhhhhhhccCCCCCcchhhhh--
Confidence 12234445556654321 2133433333322 1111111100 01222222221221
Q ss_pred cceeecCCCCCcccHHHHHH-HHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh-hc---CC
Q 009282 335 AKYVMSPPIRASGHNKALQA-ALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV-ES---GQ 409 (538)
Q Consensus 335 ~~~~~~p~~r~~~~~~~l~~-~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~-~~---~~ 409 (538)
..|.+.+..+..+ +++-|+.-.++||+.....-.. ...++|.. ...+......+- +. ..
T Consensus 335 -------eSRIR~eTIAAEdiLhDmGafSmisSDSQAMGRvGE-----vi~RtwQt----A~kmK~qrG~L~~d~~~nDN 398 (568)
T COG0804 335 -------ESRIRPETIAAEDILHDMGAFSMISSDSQAMGRVGE-----VITRTWQT----ADKMKKQRGALPEDAGGNDN 398 (568)
T ss_pred -------hhccchhhhhHHHHHhhccceEEeccchHhhhccch-----hhhhHHHH----HHHHHHhcCCCCCCCCCCcc
Confidence 1222223333343 5566999999999765543321 11111110 000000000000 01 11
Q ss_pred CCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 410 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 410 ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
+-....+...|+|||-..|+++.+||+|+||.||||+|++..+ .-++..|+++|-+.+
T Consensus 399 ~RvkRYiaKyTINPAIthGis~~vGSvEvGK~ADlVLW~PaFF----------------------GvKP~~vlkgG~ia~ 456 (568)
T COG0804 399 FRVKRYIAKYTINPAITHGISHEVGSVEVGKLADLVLWDPAFF----------------------GVKPELVLKGGMIAW 456 (568)
T ss_pred HHHhhhhhheecCHHHhcccchhccceeccceeeeeeechhhc----------------------CCCcceEEecceeee
Confidence 2334567889999999999999999999999999999996543 347899999999887
Q ss_pred EC-Ceeec
Q 009282 490 EN-DELNV 496 (538)
Q Consensus 490 ~~-~~~~~ 496 (538)
-. |....
T Consensus 457 a~mGD~Na 464 (568)
T COG0804 457 AQMGDPNA 464 (568)
T ss_pred eccCCCCC
Confidence 65 44443
|
|
| >PLN02599 dihydroorotase | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=198.31 Aligned_cols=292 Identities=17% Similarity=0.160 Sum_probs=211.2
Q ss_pred eeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-c--cceeeeeeeee
Q 009282 102 FVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-N--SCMDYGFHMAI 177 (538)
Q Consensus 102 ~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 177 (538)
+.+|---|+|+|+-++ .+.....-+.+.|+|++++|....+. ...+.++.+.+... . ..+++++++..
T Consensus 23 ~~~~~~~d~h~hlr~~--------~~~~~~~~~~~gg~t~~i~MPn~~Ppv~~~~~~~~~~~~~~~~~~~~vdf~~~~~l 94 (364)
T PLN02599 23 LTITRPDDWHLHLRDG--------AKLAAVVPHSARHFGRAIVMPNLKPPVTTTARALAYRERIMKALPPGSSFEPLMTL 94 (364)
T ss_pred EEecCCcceeeEccCc--------HHHHhhhHHhcCCcCEEEECCCCCCCcCCHHHHHHHHHHHhhhcCCCcceEEEEEE
Confidence 5689999999999876 33333445688999999999644322 45555555555443 3 34688887666
Q ss_pred ecCChhhHHHHHHHHHHcCCc-EEEEEeeeCC----CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcC
Q 009282 178 TKWDEVVSDEMEVMVKEKGIN-SFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~-~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g 252 (538)
........+++.++. +.|+. ++|+|+...+ ....+.+.+..+++.+++.|+++.+|+++.......
T Consensus 95 ~lt~~~~l~Ei~~~~-~~Gvv~gfKlyp~~~tt~s~~gv~d~~~l~~~le~~~e~G~~L~vH~E~~~~~~~~-------- 165 (364)
T PLN02599 95 YLTDNTTPEEIKAAK-ASGVVFAVKLYPAGATTNSQAGVTDLGKCLPVLEEMAEQGMPLLVHGEVTDPSVDI-------- 165 (364)
T ss_pred ecCCCCCHHHHHHHH-HCCCcEEEEECcccCcCCCccccCCHHHHHHHHHHHHhcCCEEEEecCCCcccccc--------
Confidence 333334567787775 78988 9999875322 112236899999999999999999999885321000
Q ss_pred CCCcccccccCCchHHHHHHHHHH--HHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCC
Q 009282 253 ITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (538)
...+...+.+.+ .++++.+.++++.|+++...++.++..++ + +|++++++||+.++.+++....
T Consensus 166 ------------~~~E~~~i~r~l~~~la~~~g~kI~i~HiSt~~~ve~v~~ak~-~-~vtae~tpHhL~l~~~~~~~~~ 231 (364)
T PLN02599 166 ------------FDREKVFIDTILAPLVQKLPQLKIVMEHITTMDAVEFVESCGD-G-NVAATVTPQHLLLNRNALFQGG 231 (364)
T ss_pred ------------cccHHHHHHHHHHHHHHhccCCeEEEEecChHHHHHHHHhccC-C-CEEEEecHHHHhcCHHHHhccC
Confidence 001223355667 47788899999999999988888876663 3 8999999999999988764322
Q ss_pred cccccceeecCCCCCcccHHHHHHHHhcCCc-eEEeCCCCCCChhhhhcCccCcccCCCCCcchhh---hHHHHHHHhhh
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQAALATGIL-QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE---RMHLVWDTMVE 406 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~-~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~---~~~~~~~~~~~ 406 (538)
.+..++++||+|...+++++|+++..|.. +.++|||+|+....|. .++|.+|++. .++.+. ..+.
T Consensus 232 --~~~~~k~~PPlR~~~dr~aL~~al~~G~i~~~i~SDHaPh~~~~K~--------~~~g~~Gi~~~~~~l~~l~-~~~~ 300 (364)
T PLN02599 232 --LQPHNYCLPVLKREIHREALVKAATSGSKKFFLGTDSAPHPKRAKE--------ASCGCAGIYSAPVALSLYA-KAFE 300 (364)
T ss_pred --CCCCeEEECCCCCHHHHHHHHHHHHcCCCCEEEecCCCCCChHHhc--------CCCCCCCcccHHHHHHHHH-HHHH
Confidence 23568999999999999999999999995 8999999999877653 3445555444 466543 3444
Q ss_pred cCCCCHHHHHHHHhHhHHHHcCCCCCCccc
Q 009282 407 SGQISVTDYVRLTSTECARIFNVYPRKGAI 436 (538)
Q Consensus 407 ~~~ls~~eal~~aT~~~A~~lg~~~~~GsI 436 (538)
+.+ +++++++..+.|||+++|+..+.|+|
T Consensus 301 ~~g-~l~~l~~~~S~npA~~~gL~~~kg~i 329 (364)
T PLN02599 301 EAG-ALDKLEAFTSFNGPDFYGLPRNTSTI 329 (364)
T ss_pred hcC-CHHHHHHHHhHHHHHHhCCCCCCCeE
Confidence 444 89999999999999999994466763
|
|
| >COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=185.06 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEe---eEEEEEEEC
Q 009282 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVK---GKVEVTIAG 484 (538)
Q Consensus 408 ~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~V~v~ 484 (538)
--|+++.+++..|..+|+++|+ .+.|.|.+|.+|||+|+|+....+... ......|+.|.... ..+..|.+.
T Consensus 472 p~l~Le~av~rmT~~~Ae~~GL-~drGlvreG~rADl~viDp~~vr~~a~----y~~~~lPa~G~~~~~vn~~~vat~v~ 546 (579)
T COG3653 472 PLLSLERAVRRMTGELAEWFGL-GDRGLVREGDRADLVVIDPHLVRDVAT----YTEPALPAYGILRVMVNRNVVATGVG 546 (579)
T ss_pred CcccHHHHHHHHhccHHHHhCc-ccccccccccccceEEEcccccccccc----ccCccCCCCcceEEEEeccceeeecc
Confidence 3499999999999999999999 679999999999999999865443321 11123566654222 235566777
Q ss_pred CEEEEECCeeeccCCCceEeecCCCcccc
Q 009282 485 GRVVWENDELNVVPGSGKYIEMRPFNYLF 513 (538)
Q Consensus 485 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (538)
|.+.+++|++.+....|+++|..++....
T Consensus 547 Gvvs~rdGe~tg~~~aGR~lR~g~~g~~~ 575 (579)
T COG3653 547 GVVSFRDGEFTGQVKAGRYLRAGELGAAL 575 (579)
T ss_pred eeEEEecCcccCcccccchhccccccccc
Confidence 99999999999964489999988766544
|
|
| >cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=187.12 Aligned_cols=274 Identities=20% Similarity=0.201 Sum_probs=174.7
Q ss_pred ecccccccccccccc-C---C--CCChhhHHHHHHHHHhCCcEEEecccCCCCC--------CHHHHHHHHHHHh--ccc
Q 009282 104 MPGGIDPHTHLAMEF-M---G--SETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKA--KNS 167 (538)
Q Consensus 104 ~PGlID~H~H~~~~~-~---~--~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--------~~~~~~~~~~~~~--~~~ 167 (538)
+|||||.|+-....- . + ......+...-+.++++||||+++....+.. .....+++..... +..
T Consensus 1 lPG~vdlH~D~~E~~~~PRp~v~~~~~~a~~~~d~~~~a~GiTT~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (325)
T cd01306 1 LPGLIDLHTDNLEKHVMPRPGVDWPMDIALAAHDRQLAAAGITTVFDALSFGDEEGGRRRLRNLRKLIDAIRELHARGVL 80 (325)
T ss_pred CCCeEEecCcchhcccCCCCCCCCCHHHHHHHHHHHHHhcCcccceeeeEeccccCCcccHHHHHHHHHHHHHhhhCCcc
Confidence 699999999765531 1 1 1112223344466789999999986433311 2233333333333 334
Q ss_pred ceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCC-----------------------------------ccC
Q 009282 168 CMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS-----------------------------------FMI 212 (538)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~-----------------------------------~~~ 212 (538)
.++..++..+...+.+....+..+........+.++-.-+|. ...
T Consensus 81 ~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T cd01306 81 RADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAY 160 (325)
T ss_pred hhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhc
Confidence 566677777766677778888887755566666554332221 123
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc
Q 009282 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (538)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~ 292 (538)
+.+.++++++.|+++|+++.+|..... +.++...+.|+.. ..|..
T Consensus 161 ~~~~~~~iv~~A~~~gl~vasH~d~~~---~~v~~a~~~Gv~~--------------------------------~E~p~ 205 (325)
T cd01306 161 APANRSELAALARARGIPLASHDDDTP---EHVAEAHELGVVI--------------------------------SEFPT 205 (325)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCh---HHHHHHHHCCCee--------------------------------ccCCC
Confidence 467788888999999999999985432 2233333344432 33332
Q ss_pred CHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCC
Q 009282 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (538)
Q Consensus 293 ~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~ 372 (538)
+ .+.++.+++.|+.++.+... ....++. ....+++.+++.|+.++++||+.+.+
T Consensus 206 t---~e~a~~a~~~G~~vv~gapn-------------~lrg~s~----------~g~~~~~~ll~~Gv~~al~SD~~p~s 259 (325)
T cd01306 206 T---LEAAKAARELGLQTLMGAPN-------------VVRGGSH----------SGNVSARELAAHGLLDILSSDYVPAS 259 (325)
T ss_pred C---HHHHHHHHHCCCEEEecCcc-------------cccCccc----------cccHhHHHHHHCCCeEEEEcCCCcHh
Confidence 2 36777888999988754311 0001010 11244789999999999999986432
Q ss_pred hhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCc
Q 009282 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 452 (538)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~ 452 (538)
. +...+ .+....++++.++|+++|.|||+++|++ ++|+|++||.||||+|+.+..
T Consensus 260 l-----------------------l~~~~-~la~~~gl~l~eAl~~aT~nPA~~lGl~-d~G~I~~G~~ADlvvvd~~~~ 314 (325)
T cd01306 260 L-----------------------LHAAF-RLADLGGWSLPEAVALVSANPARAVGLT-DRGSIAPGKRADLILVDDMDG 314 (325)
T ss_pred H-----------------------HHHHH-HHHHHcCCCHHHHHHHHhHHHHHHcCCC-CCCCcCCCCCCCEEEEeCCCC
Confidence 1 12222 3344567999999999999999999995 679999999999999997521
Q ss_pred eeeccCcccCCCCCCccCCeEEeeEEEEEEECC
Q 009282 453 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGG 485 (538)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G 485 (538)
...|..||++|
T Consensus 315 ----------------------~p~v~~v~~~G 325 (325)
T cd01306 315 ----------------------VPVVRTVWRGG 325 (325)
T ss_pred ----------------------CCccceEEeCc
Confidence 23688899887
|
C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria. |
| >PF13147 Amidohydro_4: Amidohydrolase; PDB: 3SFW_B 2FTW_A 2PUZ_B 2GOK_B 3HM7_E 3D6N_A 1XRT_A 1XRF_A 1YNY_B 1K1D_F | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-21 Score=187.03 Aligned_cols=299 Identities=23% Similarity=0.257 Sum_probs=162.4
Q ss_pred ecCCCeeeccccccccc--cccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeee
Q 009282 97 DATGKFVMPGGIDPHTH--LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174 (538)
Q Consensus 97 D~~G~~v~PGlID~H~H--~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (538)
|++|++|+|||||+|+| +.....+....+........++.+|+|+++++.... .......... .....
T Consensus 1 D~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~G~tt~~~~~~~~---~~~~~~~~~~-------~~~~~ 70 (304)
T PF13147_consen 1 DASGKYVLPGLIDLHVHGPLGRSEDGAPWAEQAAAASAAALAGGVTTVVDMPGTN---PEELNRARRR-------GAGYP 70 (304)
T ss_dssp E-TTSEEEE-EEEEEEECCSSCETTTEEHSSHHHHHHHHHHHTTEEEEEESSSSS---HHHHHHHHHH-------ESEEE
T ss_pred CCCCCEEccceeeeeeCCCcCCCCCCccchhhHHHHHHHHHhCCEeEEecCCCCC---chhhHHHHhh-------ccccc
Confidence 89999999999999999 333322223333445667788999999999853222 1222222111 11111
Q ss_pred eeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHHHcCC
Q 009282 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG-ALAMVHAENGDAVFEGQKRMIELGI 253 (538)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g-~~v~~H~~~~~~~~~~~~~~~~~g~ 253 (538)
................+.........++...+ .....+.+....+.+...+ +.+..|+... ........-.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 146 (304)
T PF13147_consen 71 GSGAGPRGTTIEELEALVDLIAAEGVGFVAAY---NGIEGPGLQAAIRAAHRAGVIKVVGHSPAD-GIEGAIAEGLDAME 146 (304)
T ss_dssp EECESCCHHHHHHHHHHHHHHHHTEEEEESSS---THHHHHHHHHHHHHHHHHTHEEEEEECHHH-HHHHHHHHHHHTTH
T ss_pred cccccccccchHHHHHHHHHHhhcCcceeecc---ccCCHHHHHHHHHHHHhcCCeeeecccchh-hHHHHHHhcccchh
Confidence 11122223333333333323233444433221 1345677788888888888 4555555333 22222211111110
Q ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccc
Q 009282 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
.. ...................+..+...........+.+......++....... +. .... ..
T Consensus 147 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~-----~~ 208 (304)
T PF13147_consen 147 HI--------LPHEVAEALHLAEALAQGAGPGLHCHVASDDATAEGVAIAHGFGLPPTPLHL---LA--RDAA-----AA 208 (304)
T ss_dssp HS--------THHHHHHHHHHHHHHHHHHTHCEEEEETSSHHHHHHHHHHHHTTHEEEEEEH---HH--HHHH-----HH
T ss_pred hh--------hhhhHHHHHHHHHHhhhccccchhhhhhhhhhhhHHHHHHHhhccccchHHh---hH--HHHH-----hc
Confidence 00 0111122222333333444555555555444432324445556655544431 00 0000 00
Q ss_pred ccceeecCCCC--CcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCC
Q 009282 334 AAKYVMSPPIR--ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQIS 411 (538)
Q Consensus 334 ~~~~~~~p~~r--~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls 411 (538)
...+...|+.+ .......+..++++|++++++||+.+.... +....+..... +....|+|
T Consensus 209 ~~~~~~~p~~~~~~~~~~~~~~~l~~~Gv~~~l~sD~~~~~~~-----------------~~~~~~~~~~~-~~~~~gl~ 270 (304)
T PF13147_consen 209 GIRFKVLPPLRLDLREDRAALRELLEAGVPVALGSDHAPSSTE-----------------GSGDLLHEAMR-LAVRAGLS 270 (304)
T ss_dssp GGGGEESSCHHHHTHHHHHHHHHHHHTTSSEEEEE-BBTTTTT-----------------CTTTHHHHHHH-HHHHTSST
T ss_pred CceeeeCCCccccchhhhHHHHHHHhCCCeEEEEcCCcccccc-----------------cccccchhhhh-HHhhcCCC
Confidence 24566777776 667788899999999999999998765321 00223333342 33346799
Q ss_pred HHHHHHHHhHhHHHHcCCCCCCcccccCCCccEE
Q 009282 412 VTDYVRLTSTECARIFNVYPRKGAILVGSDADII 445 (538)
Q Consensus 412 ~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlv 445 (538)
+++|++++|.|||++||+++++|+|++||+||||
T Consensus 271 ~~~al~~~T~~pA~~lgl~~~~G~i~~G~~ADlv 304 (304)
T PF13147_consen 271 PEEALRAATSNPARILGLDDDKGSIAPGKDADLV 304 (304)
T ss_dssp HHHHHHHHTHHHHHHTTBTTTSSSTSTTSB-EEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCCccCCCCCCCCcC
Confidence 9999999999999999999999999999999997
|
... |
| >PF01979 Amidohydro_1: Amidohydrolase family; InterPro: IPR006680 This group of enzymes represents a large metal dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=188.01 Aligned_cols=290 Identities=21% Similarity=0.232 Sum_probs=159.1
Q ss_pred eeeccccccccccccccCCCC-------ChhhHHHHHHHHHhCCcEEEecccCCCCCCH---HHHHHHHHHHhccccee-
Q 009282 102 FVMPGGIDPHTHLAMEFMGSE-------TIDDFFSGQAAALAGGTTMHIDFVIPINGSL---TAGFEAYEKKAKNSCMD- 170 (538)
Q Consensus 102 ~v~PGlID~H~H~~~~~~~~~-------~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~- 170 (538)
+|+|||||+|+|+..+ ... ..+.+....+.++++||||++++........ .................
T Consensus 1 ~v~PGlID~H~H~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (333)
T PF01979_consen 1 YVMPGLIDAHVHGGQG--GLRGLLDPEDHYESIRTGAKAALKGGVTTVLDTPHTSPNPDIELRNEIMEGLAAAPKIEPAM 78 (333)
T ss_dssp EEEE-EEEEEEEGGGT--THTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEEESSHCHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred CEEcChhHHhhCcCCc--CccccCCHHHHHHHHHHHHHHHHhcCeEEEEcCcccCCccccccccccccccccchhhhccc
Confidence 6999999999999987 333 3444566778889999999999853332211 11122222222221111
Q ss_pred -------eeeeeeeecCChhh---------HHHHHHHHHHcCCc-----EEEEEeeeCCCccCCHHHHHHHHHHHHh---
Q 009282 171 -------YGFHMAITKWDEVV---------SDEMEVMVKEKGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKS--- 226 (538)
Q Consensus 171 -------~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~A~~--- 226 (538)
.+.+........+. ..++.+.....+.. .+.......+...++.+.++..++.+++
T Consensus 79 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 158 (333)
T PF01979_consen 79 TLLGTGSVGGHGEGPNEPPDKNGPHDEAFEGEDFIKFIEEAGSEIKRIDGVIPAISPHNPYTVSDEELREAVELAKEFLA 158 (333)
T ss_dssp EEEEECECSEEEECHHHHHHHHSEHHHHHHHHHHHHHHHHHTTTCEEEECEEEEEEHHTTTTSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccCCchhhhHHHHHHHhhhhhhhhcccccccccccccccccchhhhhhhHHhhhhhHHH
Confidence 11111111100000 01122222233222 3334445556677788889999999988
Q ss_pred --c-CCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHH----HHHHcCCCEEEEeccCHHHHHH
Q 009282 227 --L-GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIR----LAEFVNTPLYVVHVMSMDAMEE 299 (538)
Q Consensus 227 --~-g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~h~~~~~~~~~ 299 (538)
. +.++.+|+.+.......+.... + ...+..... .....+....+.|+..... +.
T Consensus 159 ~~~~~~~~~~h~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~-~~ 219 (333)
T PF01979_consen 159 AEKLGIPVHIHVAEGTGEVEAMTHLY--G----------------MSPIEALDHLGLLEEAIDDGVDLIAHGTHLSD-EE 219 (333)
T ss_dssp HHHHTHEEEEEESSSHHHHCCCHHHH--S----------------HHHHHHHHHHHSCHHHHHHHCEEEEEHTTSEH-HH
T ss_pred HHhhcccceeeeccCcccceeEeeee--e----------------ccchhhhccchhhhhhcccccceeeccccCCH-HH
Confidence 3 9999999976543211111100 0 000111100 0111234556889888776 78
Q ss_pred HHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc-CCceEEeCCCCCCChhhhhc
Q 009282 300 IAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-GILQLVGTDHCAFNSTQKAF 378 (538)
Q Consensus 300 i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~-Gv~~~lgtD~~~~~~~~~~~ 378 (538)
++++++.+..+..++.............. .+.. .. ............+..++.. |+. +|||+.. .
T Consensus 220 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~---~~~~~l~~~~~~~~~~~~~~g~~--lgtDg~~----~--- 285 (333)
T PF01979_consen 220 IELLKETGIGIIHCPISNDSAPHKPGKAI-MMDG-TA---EGIYGLGSGGAPLFRMLDKMGVN--LGTDGVA----E--- 285 (333)
T ss_dssp HHHHHHHTHEEEEEHHHHHHHHHHTTHHS-ETTB-SB---TSBSCTTHHHHHHHHHHHCTTHE--ETTCTTC----H---
T ss_pred hhhhhccCCccccccchhhhhcccccccc-ccch-hc---cccccccccccchhhhhhhcccc--ccccccc----c---
Confidence 88889999988888876433100000000 0000 00 0000111223445666666 887 9999432 1
Q ss_pred CccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEc
Q 009282 379 GIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 448 (538)
Q Consensus 379 ~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld 448 (538)
++. .++..+ ++++++|+++|.|||++||+++++|+|++||+|||||||
T Consensus 286 ---------------~l~------~~~~~~-~~~~~~l~~aT~n~Ak~lg~~~~~G~i~~G~~ADlvv~D 333 (333)
T PF01979_consen 286 ---------------ELK------LFVRLG-ISPEEALKMATINPAKILGLDDDKGSIEPGKDADLVVLD 333 (333)
T ss_dssp ---------------HHH------HHHHHH-SHHHHHHHHHTHHHHHHTTSTTTSSSSSTTSB--EEEEE
T ss_pred ---------------ccc------cccccc-ccccccccccchhHHHHcCCCCCEEEeCcCCCcCEEEeC
Confidence 111 223333 999999999999999999999999999999999999997
|
The family includes adenine deaminase (3.5.4.2 from EC) that hydrolyses adenine to form hypoxanthine and ammonia. The adenine deaminase reaction is important for adenine utilization as a purine and also as a nitrogen source []. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases (3.5.1.25 from EC). These enzymes catalyse the reaction: |
| >KOG3892 consensus N-acetyl-glucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-20 Score=165.83 Aligned_cols=367 Identities=14% Similarity=0.150 Sum_probs=199.4
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCEEEEecCCC--CCCCCceEEecCCCeeeccccccccccccccCCCCChhhH----H
Q 009282 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF----F 128 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~--~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~----~ 128 (538)
+-|+|++|+-.......+++|+||||..-.+-. +.......|||.|+++.|||||.....+....-....+++ .
T Consensus 14 lQFtNCrilR~g~l~~edlWVR~GRIldpe~vFFeErt~Ad~riDCgG~IlaPGfIDlQiNGGfGvDFS~dte~~~eGvA 93 (407)
T KOG3892|consen 14 LQFTNCRILRGGKLLREDLWVRGGRILDPEKVFFEERTVADERIDCGGRILAPGFIDLQINGGFGVDFSQDTEDVGEGVA 93 (407)
T ss_pred eeeeeeEEeeCCceeehheeEeCCeecCcccccceeccchhheeccCCeeecCceEEEEecCccccccccchhhhhhhHH
Confidence 678999999888888899999999998754311 1112467899999999999999999988763222333333 3
Q ss_pred HHHHHHHhCCcEEEecccCCCCCCHH-HHHHHHHHH--hcccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEee
Q 009282 129 SGQAAALAGGTTMHIDFVIPINGSLT-AGFEAYEKK--AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (538)
..++..+++|||+++......+.... ..+-..... ++.+.-..+.+...+.-+.+ +.|+..-..
T Consensus 94 lVAr~ll~hGvtsf~Pt~~tsp~~~YHkilP~ip~~~~~p~GaG~LG~HlEGPFIs~~----------KrG~HPE~~--- 160 (407)
T KOG3892|consen 94 LVARQLLSHGVTSFCPTLVTSPPEVYHKILPQIPVKSGGPHGAGVLGLHLEGPFISRE----------KRGAHPEAH--- 160 (407)
T ss_pred HHHHHHHhcCCCcCCCccccCCchhhhhhccccccccCCCCccceeeeeccCCccChh----------hcCCCHHHH---
Confidence 44677899999999864322222111 111111100 11222234444444433322 111111000
Q ss_pred eCCCccCCHHHHHHHHHHHH-hcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCC
Q 009282 206 YKGSFMINDELLIEGFKRCK-SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284 (538)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~A~-~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~ 284 (538)
...++.+.+..+....- --++.+..-+++.....+.++.+.+.|+..+.+|+.+.-...|..-...+--+...++.
T Consensus 161 ---i~s~~~~~~~~l~~tYGsleni~IvTlAPEl~~~~evi~~lv~~gitVslGHS~A~L~~gE~AV~sGat~ITHLFNA 237 (407)
T KOG3892|consen 161 ---IRSFEADAFQDLLATYGSLENIRIVTLAPELGGAQEVIRALVARGITVSLGHSVADLRAGEDAVWSGATFITHLFNA 237 (407)
T ss_pred ---HhccCccHHHHHHHHhCCccceEEEEecccccCcHHHHHHHHhcceEEeeccchhccCcHHHHHhccchHHHHHHHh
Confidence 01112333333332221 22566666666666566778888888888888887555544443222222222222221
Q ss_pred CEEEEeccCHHHHHHHHHHH----HcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCC
Q 009282 285 PLYVVHVMSMDAMEEIAKAR----KAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI 360 (538)
Q Consensus 285 ~~~~~h~~~~~~~~~i~~~~----~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv 360 (538)
-.-. |...+ -.+-.+. -.|-.+.....++..+..+..+.- . +....+|
T Consensus 238 Mlpf-HHRDP---GlvGLLtSd~lp~gr~iyyGiIsDG~HThpaALRI-------A----------------yrthpqG- 289 (407)
T KOG3892|consen 238 MLPF-HHRDP---GLVGLLTSDRLPAGRCIYYGIISDGTHTHPAALRI-------A----------------YRTHPQG- 289 (407)
T ss_pred cccc-ccCCC---ceeEEeecCCCCCCCeEEEEEecCCccCChhHhhh-------h----------------hhcCCCc-
Confidence 1111 11110 0111111 122233434333333333222210 0 1111122
Q ss_pred ceEEeCCCCCCChhhh---hcC-----ccCcc---cCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 361 LQLVGTDHCAFNSTQK---AFG-----IDDFR---KIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 361 ~~~lgtD~~~~~~~~~---~~~-----~~~~~---~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
+.+.||..+.--..+ .++ ..... .-....+|.-..+....+.+++..+-|.+-||++||..||..||+
T Consensus 290 -LvLVTDAI~ALGl~~GvH~lGqq~v~Vkgl~A~~aGT~Tl~GSiApMd~CvRhf~kATgCs~e~AleaAtlhPAqlLg~ 368 (407)
T KOG3892|consen 290 -LVLVTDAIPALGLGNGVHTLGQQEVEVKGLTAYVAGTKTLSGSIAPMDVCVRHFLKATGCSMESALEAATLHPAQLLGL 368 (407)
T ss_pred -eEEEecchhhcccccccccccceeEEEcceEEEeeccccccccccCcHHHHHHHHHhcCCcHHHHHhhhccChHHhhcc
Confidence 233344332211000 000 00000 001123444445777888888888899999999999999999999
Q ss_pred CCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 430 YPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 430 ~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
++.+|++..|..||||++|.+ -.|+.+|+.|+.|++.
T Consensus 369 ek~KGTLDfG~dADFVllDd~-------------------------l~V~aT~isG~~V~~a 405 (407)
T KOG3892|consen 369 EKSKGTLDFGADADFVLLDDS-------------------------LHVQATYISGELVWQA 405 (407)
T ss_pred ccccccccccccCceEEEccc-------------------------eEEEEEEEccEEEEec
Confidence 999999999999999999943 3799999999999975
|
|
| >COG1229 FwdA Formylmethanofuran dehydrogenase subunit A [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-17 Score=153.93 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEE
Q 009282 409 QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 488 (538)
Q Consensus 409 ~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V 488 (538)
.+++.|...+--.+||+.+|+.+.+|.|-+|..||+.|.|-||...-+..+... ...+ .++-.+|+++|++|
T Consensus 437 E~t~~eia~~TRa~~ak~lgl~e~kGhLg~GadadIaiYdlnP~~vDps~dye~-----v~ka---f~~A~ytlK~GeIv 508 (575)
T COG1229 437 ELTLYELAIMTRANPAKVLGLSERKGHLGVGADADIAIYDLNPEQVDPSNDYEK-----VEKA---FRKAAYTLKGGEIV 508 (575)
T ss_pred cccHHHHHHHHhcChhhhcccccccCccCcCccCceEEEecChhhcCCcccHHH-----HHHH---HhheeEEecCceEE
Confidence 378899999988999999999888999999999999999988664332211110 1111 24678999999999
Q ss_pred EECCeeeccC
Q 009282 489 WENDELNVVP 498 (538)
Q Consensus 489 ~~~~~~~~~~ 498 (538)
.+||+++...
T Consensus 509 vkdGeiv~~p 518 (575)
T COG1229 509 VKDGEIVAEP 518 (575)
T ss_pred EecceEEecc
Confidence 9999999875
|
|
| >cd01305 archeal_chlorohydrolases Predicted chlorohydrolases | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=153.57 Aligned_cols=235 Identities=18% Similarity=0.237 Sum_probs=132.9
Q ss_pred eeeccccccccccccccC-C-----------------------CCChhhHHHH----HHHHHhCCcEEEecccCCCCCCH
Q 009282 102 FVMPGGIDPHTHLAMEFM-G-----------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGSL 153 (538)
Q Consensus 102 ~v~PGlID~H~H~~~~~~-~-----------------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~~~ 153 (538)
+|+|||||+|+|+++... | ..++++++.. +..++++||||+.|+........
T Consensus 1 ~v~PG~vn~H~H~~~~~~rg~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~l~~GtTt~~d~~~~~~~~~ 80 (263)
T cd01305 1 ILIPALVNAHTHLGDSAIKEVGDGLPLDDLVAPPDGLKHRLLAQADDRELAEAMRKVLRDMRETGIGAFADFREGGVEGI 80 (263)
T ss_pred CccccceeccccHHHHHhhcCCCCCcHHHHhcCcccchHHHHHhCCHHHHHHHHHHHHHHHHhcCCeEEEEccCcchhHH
Confidence 489999999999977621 1 1222333222 34568899999999743211122
Q ss_pred HHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEE
Q 009282 154 TAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (538)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 233 (538)
....++..+.+.+. .++.. .+. ..+..++ +. ..... +..++....+ ++++++.|+++|+++.+
T Consensus 81 ~a~~~a~~~~g~r~---~~~~~-~~~-~~~~~~~---~~--~~~~~----~~~~~~~~~~---l~~~~~~A~~~g~~v~~ 143 (263)
T cd01305 81 ELLRRALGKLPVPF---EVILG-RPT-EPDDPEI---LL--EVADG----LGLSSANDVD---LEDILELLRRRGKLFAI 143 (263)
T ss_pred HHHHHHHHhcCCCc---eEEec-cCC-cchHHHH---HH--hhccc----ccCCCCCccC---HHHHHHHHHHCCCeeEE
Confidence 33334444444332 11111 111 1111222 21 12222 2223333333 99999999999999999
Q ss_pred EcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEe
Q 009282 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGE 313 (538)
Q Consensus 234 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~ 313 (538)
|+.+..... |. ..++.++++ +.+. +.|+...++ +.++++++.|+.++.|
T Consensus 144 H~~e~~~~~---------g~----------------~~i~~~~~~----~~~~-i~H~~~l~~-~~~~~la~~g~~v~~~ 192 (263)
T cd01305 144 HASETRESV---------GM----------------TDIERALDL----EPDL-LVHGTHLTD-EDLELVRENGVPVVLC 192 (263)
T ss_pred ecCCCCCCC---------Cc----------------hhHHHHHhC----CCCE-EEEcCCCCH-HHHHHHHHcCCcEEEC
Confidence 996542100 00 112222222 4444 689988887 8899999999999998
Q ss_pred ccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcch
Q 009282 314 PVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~ 393 (538)
|... +..+.+. +| +++++++|+++++|||....+.. +++.
T Consensus 193 P~sn-------------~~l~~g~---~p---------~~~l~~~Gv~v~lGtD~~~~~~~------~~~~--------- 232 (263)
T cd01305 193 PRSN-------------LYFGVGI---PP---------VAELLKLGIKVLLGTDNVMVNEP------DMWA--------- 232 (263)
T ss_pred hhhH-------------HHhCCCC---CC---------HHHHHHCCCcEEEECCCCccCCC------CHHH---------
Confidence 8652 2111111 22 78999999999999997543211 1111
Q ss_pred hhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHH
Q 009282 394 EERMHLVWDTMVESGQISVTDYVRLTSTECARI 426 (538)
Q Consensus 394 ~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~ 426 (538)
++.+......+ ...+++.++|+++|.|+|++
T Consensus 233 ~~~~~~~~~~~--~~~~~~~~~l~~aT~~gA~~ 263 (263)
T cd01305 233 EMEFLAKYSRL--QGYLSPLEILRMATVNAAEF 263 (263)
T ss_pred HHHHHHHHhcc--cccCCHHHHHHHHhhccccC
Confidence 22222111111 11469999999999999974
|
These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases. |
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-15 Score=150.45 Aligned_cols=252 Identities=18% Similarity=0.146 Sum_probs=142.1
Q ss_pred HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcc--cceeeeeee---e---eecCChhhHHHHH---HHHHHcCCcE
Q 009282 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN--SCMDYGFHM---A---ITKWDEVVSDEME---VMVKEKGINS 199 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~---~~~~~~~~~~~~~---~~~~~~g~~~ 199 (538)
...+.+.||||+.++. .........++.+.+.... ..+.+..+. . ...........+. ......|..
T Consensus 136 ~~~~~a~GiTt~~d~~-~~~~~~~~~~~~~~~l~~~~~l~~rv~~~~~~~~vk~~~dg~~~~~~a~~~~~~~~~~~g~~- 213 (404)
T PF07969_consen 136 AMAAGAYGITTVLDYG-GGFASDPEDLEALRELAAEGGLPLRVHLYPRIGGVKIFADGSPGGRTALLEEPYYADEPGAP- 213 (404)
T ss_dssp HHHHCHTCEEEETTCE-CCCGEHHHHHHHHHHHHHCTC--SEEEEEEEEEEEEEESSSSTTHHHHHHHHHHHHHHHTSE-
T ss_pred HHHhcCCCeEEecCCc-cccCCCHHHHHHHHHHhhhcCCCeeeeeecccCceeeccccccccchhhhccccccCccccc-
Confidence 3445679999999987 1122344455555544433 223333222 1 1122221222222 222233331
Q ss_pred EEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHH
Q 009282 200 FKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (538)
Q Consensus 200 ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~ 279 (538)
.+..+....+.+.+.++++.|.+.|+++.+|+.++..+...++.+.....
T Consensus 214 ----~~~~g~~~~~~~~l~~~v~~a~~~g~~v~vHa~gd~a~~~~l~a~~~~~~-------------------------- 263 (404)
T PF07969_consen 214 ----VHISGLPSFDPEELEELVRAAREAGLQVAVHAIGDRAIDEALDAIEAARA-------------------------- 263 (404)
T ss_dssp ----EEETC--SSSHHHHHHHHHHHHHCT-EEEEEEESHHHHHHHHHHHHHHTC--------------------------
T ss_pred ----ccccccccccchhHHHHHHHHHhcCCeeEEEEcCCchHHhHHHHHHhhcc--------------------------
Confidence 23455667788889999999999999999999887766666555433222
Q ss_pred HHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcC
Q 009282 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (538)
Q Consensus 280 ~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G 359 (538)
...+.|+..... +.++++++.++.+...+ +++...........+..... ....+++.+++.|
T Consensus 264 -----~~~i~h~~~~~~-~~~~~~~~l~~~~~~~p--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~G 325 (404)
T PF07969_consen 264 -----RGRIEHAELIDP-DDIERMAELGVTASVQP--HFLFSWGGEWYEERLGPERA----------RRIYPIRSLLDAG 325 (404)
T ss_dssp -----CHEEEEHCBCCH-HHHHHHHHHTTEEEECC--THHHHETEETHHHHHHHHCG----------GGBTHHHHHHHCT
T ss_pred -----cceeeccccCCH-HHHHHHHHhCCccccCh--hHhhhccchhhhhhhhhHHH----------HHHhHHHHHHhcc
Confidence 116889888776 88889999998766555 22211110000000000000 0114478999999
Q ss_pred CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHH-H----H-hhhcCCCCHHHHHHHHhHhHHHHcCCCCCC
Q 009282 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW-D----T-MVESGQISVTDYVRLTSTECARIFNVYPRK 433 (538)
Q Consensus 360 v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~-~----~-~~~~~~ls~~eal~~aT~~~A~~lg~~~~~ 433 (538)
+++++|||++..... |+... ........ . . ....+.+|++|||+++|+|||+.+|+++++
T Consensus 326 v~v~~gsD~p~~~~~-------P~~~~-------~~~~~~~~~~~~~~~~~~~~~~ls~~eAl~~~T~~~A~~~g~~~~~ 391 (404)
T PF07969_consen 326 VRVALGSDAPVSPPN-------PFRGI-------WAAVTRQMAGERSGPVLGPEQRLSLEEALRAYTSNPARALGLEDRK 391 (404)
T ss_dssp TEEEE--TTTTSSCC-------HHHHH-------HHHHHHHHCHHTHHHCCGGTGSSHHHHHHHHTTHHHHHHTT-TTTS
T ss_pred CceecCcCCcccccC-------cchhh-------hhhhccccccccccccccccccCCHHHHHHHHhHHHHHHcCCCCCc
Confidence 999999996532211 22111 01110000 0 0 011266999999999999999999998888
Q ss_pred cccccCCCccEEE
Q 009282 434 GAILVGSDADIII 446 (538)
Q Consensus 434 GsI~~Gk~ADlvv 446 (538)
|+|++||.|||||
T Consensus 392 Gsl~~Gk~AD~vV 404 (404)
T PF07969_consen 392 GSLEPGKLADFVV 404 (404)
T ss_dssp SSSSTTSBS-EEE
T ss_pred ceECCCCCcCeEC
Confidence 9999999999997
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-15 Score=110.62 Aligned_cols=67 Identities=51% Similarity=0.666 Sum_probs=48.0
Q ss_pred EEEeCCEEEEecCCCCCC-CCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEE
Q 009282 73 VYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142 (538)
Q Consensus 73 V~I~~grI~~Vg~~~~~~-~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~ 142 (538)
|+|+||||++|++....+ .+.++||++|++|+|||||+|+|+... . ............++++||||+
T Consensus 1 V~I~~g~I~~v~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~--~-~~~~~~~~~~~~~l~~GvTTV 68 (68)
T PF13594_consen 1 VLIEDGKIVAVGPDSELPADAAEVIDAKGKYVMPGFIDMHTHLGEP--G-WQSLDPETEAAAALAGGVTTV 68 (68)
T ss_dssp EEEETTEEEEEESSCCTTSTCCEEEEETTCEEEE-EEEEEE-TTTT--C-EGGCTCHHHHHHHHHTTEEEE
T ss_pred CEEECCEEEEeCCCCCCCCCCCEEEECCCCEEeCCeEeeeeccccc--c-ccccchhhHHHHHHCcceeeC
Confidence 789999999997654443 456889999999999999999997733 1 111111344666789999996
|
... |
| >PRK06886 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=127.51 Aligned_cols=267 Identities=14% Similarity=0.139 Sum_probs=143.5
Q ss_pred ccccccccccccccCC-------------------------CCChhhHH----HHHHHHHhCCcEEEecccCCCCC---C
Q 009282 105 PGGIDPHTHLAMEFMG-------------------------SETIDDFF----SGQAAALAGGTTMHIDFVIPING---S 152 (538)
Q Consensus 105 PGlID~H~H~~~~~~~-------------------------~~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~---~ 152 (538)
=||||.|+|+...+.. ..+.+++. ..++.++++|+|.++.+....+. .
T Consensus 20 ~gfv~~H~HlDk~~~~~~~~~~~~~~g~l~e~i~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~ 99 (329)
T PRK06886 20 GGWVNAHAHADRAFTMTPEKIAIYHYANLQQKWDLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDR 99 (329)
T ss_pred cCCccccccccccccCCCccccccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCcccc
Confidence 3899999999875311 01223332 23455688999999876533222 3
Q ss_pred HHHHHHHHHHHhc-ccceee-eeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeee-CCCccCCHHHHHHHHHHHHhcCC
Q 009282 153 LTAGFEAYEKKAK-NSCMDY-GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY-KGSFMINDELLIEGFKRCKSLGA 229 (538)
Q Consensus 153 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~-~~~~~~~~~~l~~~~~~A~~~g~ 229 (538)
..+.+.+..+... ..-+.+ .|...... .....+.+.+.. +. ++.+...... ......+.+.+..+++.|+++|+
T Consensus 100 ~~~a~~~~r~~~~~~idlq~vafPq~g~~-~~~~~~l~~~al-~~-advvGGiP~~~~~~~~~~~e~l~~~~~lA~~~g~ 176 (329)
T PRK06886 100 AIIAAHKAREVYKHDIILKFANQTLKGVI-EPTAKKWFDIGS-EM-VDMIGGLPYRDELDYGRGLEAMDILLDTAKSLGK 176 (329)
T ss_pred HHHHHHHHHHHhcCcceEEEEecChhhcc-CccHHHHHHHHH-Hh-CCEEeCccCCcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 3344444333332 222222 11111111 122233343333 22 4554433111 01124567899999999999999
Q ss_pred eEEEEcCCh-hhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHH------HHHHHH
Q 009282 230 LAMVHAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDA------MEEIAK 302 (538)
Q Consensus 230 ~v~~H~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~------~~~i~~ 302 (538)
++.+|+.+. +.....++.+. .+.++ ... ..++.+.|+..... .+.+++
T Consensus 177 ~Id~Hlde~~~~~~~~le~l~-----------------------~~~~~-~Gl-~grV~~sH~~~L~~~~~~~~~~~i~~ 231 (329)
T PRK06886 177 MVHVHVDQFNTPKEKETEQLC-----------------------DKTIE-HGM-QGRVVAIHGISIGAHSKEYRYRLYQK 231 (329)
T ss_pred CeEEeECCCCchhHHHHHHHH-----------------------HHHHH-cCC-CCCEEEEEeccccCcChhhHHHHHHH
Confidence 999999543 22222222211 01111 112 23788999987553 246899
Q ss_pred HHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccC
Q 009282 303 ARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDD 382 (538)
Q Consensus 303 ~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~ 382 (538)
+++.|+.|+++|.+. +++..... .+..+.++ .++.+++++||++++|||+... +
T Consensus 232 La~agi~Vv~~P~sn-l~l~~~~~---~~p~~rGv------------~pv~eL~~aGV~V~lGtDnv~D----------~ 285 (329)
T PRK06886 232 MREADMMVIACPMAW-IDSNRKED---LMPFHNAL------------TPADEMIPEGITVALGTDNICD----------Y 285 (329)
T ss_pred HHHcCCeEEECchhh-hhhccccc---cCcCCCCC------------CCHHHHHHCCCeEEEecCCCcc----------c
Confidence 999999999998862 11111000 00011111 2389999999999999997532 2
Q ss_pred cccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 383 FRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 383 ~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
|. |+|...+-..+.... . ...-.++.++|+++|.|+|+++|++
T Consensus 286 ~~--p~g~~Dmle~~~l~~-~--~~~~~~~~~~l~maT~~gAraLgl~ 328 (329)
T PRK06886 286 MV--PLCEGDMWQELSLLA-A--GCRFYDLDEMVNIASINGRKVLGLE 328 (329)
T ss_pred CC--CCCCCCHHHHHHHHH-H--HcCCCCHHHHHHHHhhhHHHHhCCC
Confidence 21 222211111111111 1 1222478999999999999999984
|
|
| >cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=130.82 Aligned_cols=247 Identities=22% Similarity=0.236 Sum_probs=140.5
Q ss_pred ccccccccccccCCC------------CC----hhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhccc-c
Q 009282 107 GIDPHTHLAMEFMGS------------ET----IDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNS-C 168 (538)
Q Consensus 107 lID~H~H~~~~~~~~------------~~----~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~-~ 168 (538)
|||+|+|+....... .+ ..........++++||||+.++...... ...+..+...+..... .
T Consensus 1 ~ID~H~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T cd01292 1 FIDTHVHLDGSALRGTRLNLELKEAEELSPEDLYEDTLRALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAG 80 (275)
T ss_pred CcccchhhHHHHHccCCCccccccccccCHHHHHHHHHHHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcC
Confidence 799999988762110 11 2223455677899999999998654432 1012222222222111 1
Q ss_pred eeeeeeeeeecCC--------hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009282 169 MDYGFHMAITKWD--------EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (538)
Q Consensus 169 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (538)
+...+........ +...+.+.... ..|+.++++...... ...+.+.++++++.|+++|+++.+|+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~gi~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~ 158 (275)
T cd01292 81 IRVVLGLGIPGVPAAVDEDAEALLLELLRRGL-ELGAVGLKLAGPYTA-TGLSDESLRRVLEEARKLGLPVVIHAGELPD 158 (275)
T ss_pred eeeEEeccCCCCccccchhHHHHHHHHHHHHH-hcCCeeEeeCCCCCC-CCCCcHHHHHHHHHHHHcCCeEEEeeCCccc
Confidence 2222111111111 12223333332 247778876544322 1247899999999999999999999965432
Q ss_pred HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccc
Q 009282 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (538)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~ 320 (538)
. ...+.++++.... +.++++.|+...+. +.++.+++.|+.+..++.....
T Consensus 159 ~---------------------------~~~~~~~~~~~~~-~~~~~~~H~~~~~~-~~~~~~~~~g~~~~~~~~~~~~- 208 (275)
T cd01292 159 P---------------------------TRALEDLVALLRL-GGRVVIGHVSHLDP-ELLELLKEAGVSLEVCPLSNYL- 208 (275)
T ss_pred C---------------------------ccCHHHHHHHHhc-CCCEEEECCccCCH-HHHHHHHHcCCeEEECCccccc-
Confidence 1 0112223333322 67889999988755 7788888889888777654111
Q ss_pred cCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHH
Q 009282 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 400 (538)
.. +.......+..+++.|+++++|||+.+.+... .+...
T Consensus 209 -~~--------------------~~~~~~~~~~~~~~~g~~~~lgTD~~~~~~~~--------------------~~~~~ 247 (275)
T cd01292 209 -LG--------------------RDGEGAEALRRLLELGIRVTLGTDGPPHPLGT--------------------DLLAL 247 (275)
T ss_pred -cc--------------------CCcCCcccHHHHHHCCCcEEEecCCCCCCCCC--------------------CHHHH
Confidence 00 00011234788999999999999986542110 11112
Q ss_pred HHHhhh--cCCCCHHHHHHHHhHhHHHH
Q 009282 401 WDTMVE--SGQISVTDYVRLTSTECARI 426 (538)
Q Consensus 401 ~~~~~~--~~~ls~~eal~~aT~~~A~~ 426 (538)
++.+.. ..+++.+++++++|.|||++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~t~n~a~~ 275 (275)
T cd01292 248 LRLLLKVLRLGLSLEEALRLATINPARA 275 (275)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhccccCC
Confidence 212221 12379999999999999974
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others. |
| >TIGR01430 aden_deam adenosine deaminase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-08 Score=98.87 Aligned_cols=142 Identities=12% Similarity=0.125 Sum_probs=95.1
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEe
Q 009282 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (538)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h 290 (538)
..+.+.+..+++.|+++|+++.+|+.+..........+...|. . .+.|
T Consensus 168 ~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~-------------------------------~-ri~H 215 (324)
T TIGR01430 168 GGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGA-------------------------------T-RIGH 215 (324)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCc-------------------------------h-hcch
Confidence 4468899999999999999999999643111111111112222 1 3567
Q ss_pred ccCH--HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccc--cceeecCCCCCcccHHHHHHHHhcCCceEEeC
Q 009282 291 VMSM--DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA--AKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (538)
Q Consensus 291 ~~~~--~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgt 366 (538)
+... ++ +.++.++++|+.+..||.+. +..+ ..+. ..+++.++++|+++++||
T Consensus 216 g~~l~~~~-~~i~~l~~~gi~v~~cP~Sn-------------~~l~~~~~~~----------~~pi~~l~~~Gv~v~igT 271 (324)
T TIGR01430 216 GVRALEDP-ELLKRLAQENITLEVCPTSN-------------VALGVVKSLA----------EHPLRRFLEAGVKVTLNS 271 (324)
T ss_pred hhhhccCH-HHHHHHHHcCceEEECCccc-------------ccccccCCcc----------cChHHHHHHCCCEEEECC
Confidence 6655 33 68999999999999999873 2221 1111 123889999999999999
Q ss_pred CCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
|.+.... ..+...+..++...++++.| |+++|.|+++...+.
T Consensus 272 D~~~~~~---------------------~~l~~e~~~a~~~~~l~~~e-l~~~~~na~~~~f~~ 313 (324)
T TIGR01430 272 DDPAYFG---------------------SYLTEEYEIAAKHAGLTEEE-LKQLARNALEGSFLS 313 (324)
T ss_pred CCCcccC---------------------CCHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCCC
Confidence 9653311 12333333455556799999 889999999998874
|
This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase. |
| >COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.3e-08 Score=88.21 Aligned_cols=284 Identities=17% Similarity=0.181 Sum_probs=167.0
Q ss_pred eeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC--CHHHHHHHH---HHHhcccceeeeeeeee
Q 009282 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAY---EKKAKNSCMDYGFHMAI 177 (538)
Q Consensus 103 v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~ 177 (538)
-+..-.|+|.|+-.+ ++........+.++...+-|..-.+. ...+.+... .+..+.. -.+-..+..
T Consensus 6 ~i~rPdDwHlHLRdg--------~mL~~V~p~ts~~f~rAiIMPNL~pPvtt~~~a~aYr~rIl~a~p~~-~~F~PLMtl 76 (344)
T COG0418 6 TIRRPDDWHLHLRDG--------AMLKAVVPYTSRGFGRAIIMPNLVPPVTTVADALAYRERILKAVPAG-HRFTPLMTL 76 (344)
T ss_pred eccCccceeEEecCc--------cHHHHhhhhhhhhcceEEEcCCCCCCcccHHHHHHHHHHHHHhCcCC-CCCceeEEE
Confidence 356678999999776 22122222344466666666433332 222222221 1121211 111111112
Q ss_pred ecCChhhHHHHHHHHHHcCCcEEEEEeeeC----CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCC
Q 009282 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGI 253 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~ 253 (538)
...+.-..+++.+...+....++|.|..+. .....+.+.+..+++..++.|+++.+|-+......+..+
T Consensus 77 YLtd~~~peel~~a~~~g~i~a~KlYPaGaTTNS~~GV~~~~~~~pvle~Mq~~gmpLlvHGEvt~~~vDifd------- 149 (344)
T COG0418 77 YLTDSTTPEELEEAKAKGVIRAVKLYPAGATTNSDSGVTDIEKIYPVLEAMQKIGMPLLVHGEVTDAEVDIFD------- 149 (344)
T ss_pred EecCCCCHHHHHHHHhcCcEEEEEeccCCccccCcCCcCcHHHHHHHHHHHHHcCCeEEEecccCCccccchh-------
Confidence 222222345565555233378899987642 222345788899999999999999999965432111111
Q ss_pred CCcccccccCCchHHHHHHHHHHH-H-HHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCc
Q 009282 254 TGPEGHALSRPPLLEGEATTRAIR-L-AEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~l~-~-~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 331 (538)
-|..-+...++ + .++...++++.|+++.+. ++..++.+.++.++.++||+.++.++..-.+.
T Consensus 150 -------------rE~~Fi~~vl~pl~~~fP~LKIV~EHiTT~da---v~~v~~~~~nlaATIT~hHL~~nrnd~l~Ggi 213 (344)
T COG0418 150 -------------REAAFIESVLEPLRQRFPKLKIVLEHITTKDA---VEYVKDANNNLAATITPHHLLLNRNDMLVGGI 213 (344)
T ss_pred -------------hHHHHHHHHHHHHHhhCCcceEEEEEeccHHH---HHHHHhcCcceeeEeehhheeeehhhhhcCCC
Confidence 11122332332 2 244578999999988654 55566777779999999999988776543222
Q ss_pred ccccceeecCCCCCcccHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCccCcccCCCCCcchh---hhHHHHHHHhhhc
Q 009282 332 VTAAKYVMSPPIRASGHNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIE---ERMHLVWDTMVES 407 (538)
Q Consensus 332 ~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~---~~~~~~~~~~~~~ 407 (538)
+ ..+.+.|-+....+++++.++.-.|- ++.+|||++|+....|.. .+|.+|.- ..++...+.+-+.
T Consensus 214 ~--Ph~fClPilKr~~hr~AL~~aa~sg~~kfFlGtDSAPH~~~~Ke~--------~cgcAG~fsap~al~~~AevFE~~ 283 (344)
T COG0418 214 R--PHLFCLPILKRETHREALREAATSGHPKFFLGTDSAPHARSRKES--------ACGCAGIFSAPFALPLYAEVFEEE 283 (344)
T ss_pred C--cceeeeccccchhhHHHHHHHHhcCCCcEEecCCCCCCccccccc--------ccccccccccHhHHHHHHHHHHHh
Confidence 2 56778888888888999988766654 899999999998876653 23444432 2344444323234
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCC
Q 009282 408 GQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 408 ~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
+.+..-| ..++.|+.++.|+.
T Consensus 284 naL~~Le--aF~S~nGp~fY~lp 304 (344)
T COG0418 284 NALDNLE--AFASDNGPKFYGLP 304 (344)
T ss_pred cHHHHHH--HHHhhcCcceeccc
Confidence 4333333 34678999999995
|
|
| >cd01310 TatD_DNAse TatD like proteins; E | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.2e-08 Score=91.72 Aligned_cols=243 Identities=18% Similarity=0.164 Sum_probs=131.6
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeec-CChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 185 (538)
+||+|+|+... .. ..+.......+.++||++++.+.... ...+.+....+.........|++..... ..++..
T Consensus 1 ~~D~H~H~~~~--~~--~~~~~~~l~~~~~~gv~~~v~~~~~~--~~~~~~~~la~~~~~i~~~~G~hP~~~~~~~~~~~ 74 (251)
T cd01310 1 LIDTHCHLDFP--QF--DADRDDVLARAREAGVIKIIVVGTDL--KSSKRALELAKKYDNVYAAVGLHPHDADEHVDEDL 74 (251)
T ss_pred CEEeeeCCCch--hh--ccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCeEEEEeeCcchhhcCCHHHH
Confidence 68999998754 11 12334446677889999998775432 1222333332222232333444422111 122335
Q ss_pred HHHHHHHHHcCCcEE-EEEeeeCCCcc---CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVKEKGINSF-KFFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~~~g~~~i-k~~~~~~~~~~---~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
+++++..+..+..++ ++.++...... ...+.++.+++.|.++++++.+|+.... ..
T Consensus 75 ~~l~~~~~~~~~~~IGeiGld~~~~~~~~~~q~~~~~~~~~~a~e~~~pv~iH~~~~~--~~------------------ 134 (251)
T cd01310 75 DLLELLAANPKVVAIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSRDAH--ED------------------ 134 (251)
T ss_pred HHHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--HH------------------
Confidence 566665534455555 33333321111 3457788899999999999999986431 11
Q ss_pred cCCchHHHHHHHHHHHHHHHcC-CCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeec
Q 009282 262 SRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~-~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
++++..+.+ ....+.|...... +.++.+.+.|+.+..+.... . .
T Consensus 135 -------------~~~l~~~~~~~~~~i~H~~~~~~-~~~~~~~~~g~~~~~~~~~~--~-----------~-------- 179 (251)
T cd01310 135 -------------VLEILKEYGPPKRGVFHCFSGSA-EEAKELLDLGFYISISGIVT--F-----------K-------- 179 (251)
T ss_pred -------------HHHHHHhcCCCCCEEEEccCCCH-HHHHHHHHcCCEEEeeeeec--c-----------C--------
Confidence 123334443 3345667765433 66777777888776554320 0 0
Q ss_pred CCCCCcccHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHH
Q 009282 341 PPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418 (538)
Q Consensus 341 p~~r~~~~~~~l~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~ 418 (538)
....+..+.+.+ -++.++||++...... . .|..+.-..+...+..+....|++.+++.+.
T Consensus 180 -------~~~~~~~~~~~~~~dril~~TD~p~~~~~~-------~----~~~~~~~~~~~~~~~~la~~~gl~~e~~~~~ 241 (251)
T cd01310 180 -------NANELREVVKEIPLERLLLETDSPYLAPVP-------F----RGKRNEPAYVKHVAEKIAELKGISVEEVAEV 241 (251)
T ss_pred -------CCHHHHHHHHhCChHHEEEcccCCCCCCCC-------C----CCCCCCChhHHHHHHHHHHHHCcCHHHHHHH
Confidence 001234444443 3789999974322110 0 0111112234444434444456999999999
Q ss_pred HhHhHHHHcC
Q 009282 419 TSTECARIFN 428 (538)
Q Consensus 419 aT~~~A~~lg 428 (538)
.+.||+++||
T Consensus 242 ~~~N~~~ll~ 251 (251)
T cd01310 242 TTENAKRLFG 251 (251)
T ss_pred HHHHHHHHhC
Confidence 9999999986
|
coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity. |
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-07 Score=93.24 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
.+.+.+..+++.|+++|+++.+|+.+........+.+...|. . .+.|+
T Consensus 170 ~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~-------------------------------~-~i~H~ 217 (325)
T cd01320 170 FPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGA-------------------------------E-RIGHG 217 (325)
T ss_pred CCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCC-------------------------------c-ccchh
Confidence 478899999999999999999999543222222222111221 1 35676
Q ss_pred cCHH-HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCC
Q 009282 292 MSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (538)
Q Consensus 292 ~~~~-~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~ 370 (538)
.... ..+.++++++.|+.+..||.+... .+.... ....+++.+++.|+++++|||.++
T Consensus 218 ~~l~~~~~~~~~l~~~gi~v~~~P~sn~~-------------l~~~~~--------~~~~p~~~l~~~Gv~v~lgTD~~~ 276 (325)
T cd01320 218 IRAIEDPELVKRLAERNIPLEVCPTSNVQ-------------TGAVKS--------LAEHPLRELLDAGVKVTINTDDPT 276 (325)
T ss_pred hccCccHHHHHHHHHcCCeEEECCCcccc-------------ccccCC--------cccChHHHHHHCCCEEEECCCCCc
Confidence 6652 126899999999999999876322 111100 011338899999999999999753
Q ss_pred CChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
.... .+...+..++...++++.| |..+|.|++++..+.
T Consensus 277 ~~~~---------------------~~~~e~~~~~~~~~l~~~e-l~~~~~na~~~~f~~ 314 (325)
T cd01320 277 VFGT---------------------YLTDEYELLAEAFGLTEEE-LKKLARNAVEASFLS 314 (325)
T ss_pred ccCC---------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCCC
Confidence 3211 1222332344445699999 566899999988763
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >TIGR00010 hydrolase, TatD family | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.6e-07 Score=89.73 Aligned_cols=245 Identities=18% Similarity=0.153 Sum_probs=125.7
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecC-ChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKW-DEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 185 (538)
|||+|+|+... ... .+.......+..+|+++++.+.... . ..+.+....+..++.+...|++...... ..+..
T Consensus 1 ~iD~H~Hl~~~--~~~--~~~~~~~~~~~~~Gv~~~v~~~~~~-~-~~~~~~~~~~~~~~i~~~~GihP~~~~~~~~~~~ 74 (252)
T TIGR00010 1 LIDAHCHLDFL--DFE--EDVEEVIERAKAAGVTAVVAVGTDL-E-DFLRALELAEKYPNVYAAVGVHPLDVDDDTKEDI 74 (252)
T ss_pred CEEeccCCCCh--hhc--cCHHHHHHHHHHcCCCEEEEecCCH-H-HHHHHHHHHHHCCCEEEEEEeCcchhhcCCHHHH
Confidence 68999998654 111 1344446777889999999764331 1 1222222222222333334444311111 12344
Q ss_pred HHHHHHHHHcCCcEEEEE-eeeCCCcc---CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVKEKGINSFKFF-MAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~-~~~~~~~~---~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
+++++..+..+..+++.. +++..... ...+.+++.++.|.++|+++.+|+.... ...++.+.+.+
T Consensus 75 ~~l~~~l~~~~~~~iGEiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~l~~~~--------- 143 (252)
T TIGR00010 75 KELERLAAHPKVVAIGETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHARDAE--EDVLDILREEK--------- 143 (252)
T ss_pred HHHHHHccCCCEEEEEecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEecCcc--HHHHHHHHhcC---------
Confidence 555555433344455332 22211111 0247888889999999999999996432 12222222111
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
.....+.|...... +.+..+.+.|+.+..+.... +.
T Consensus 144 ---------------------~~~~~i~H~~~~~~-~~~~~~~~~g~~~~~~~~~~-------------~~--------- 179 (252)
T TIGR00010 144 ---------------------PKVGGVLHCFTGDA-ELAKKLLDLGFYISISGIVT-------------FK--------- 179 (252)
T ss_pred ---------------------CCCCEEEEccCCCH-HHHHHHHHCCCeEeeceeEe-------------cC---------
Confidence 11234667765443 67777777887776543210 00
Q ss_pred CCCCcccHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHH
Q 009282 342 PIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~a 419 (538)
....+.++++.. -++.++||.+...+. ++... ... -..+......+....|++++++.+++
T Consensus 180 ------~~~~~~~~i~~~~~dril~~TD~p~~~~~-------~~~~~---~~~-p~~i~~~~~~~a~~~g~~~~~~~~~~ 242 (252)
T TIGR00010 180 ------NAKSLREVVRKIPLERLLVETDSPYLAPV-------PYRGK---RNE-PAFVRYTVEAIAEIKGMDVEELAQIT 242 (252)
T ss_pred ------CcHHHHHHHHhCCHHHeEecccCCCCCCC-------CCCCC---CCC-ChhHHHHHHHHHHHhCcCHHHHHHHH
Confidence 002234444443 478999997532211 01100 011 11122222122223469999999999
Q ss_pred hHhHHHHcCC
Q 009282 420 STECARIFNV 429 (538)
Q Consensus 420 T~~~A~~lg~ 429 (538)
+.||+++|++
T Consensus 243 ~~N~~~~~~~ 252 (252)
T TIGR00010 243 TKNAKRLFGL 252 (252)
T ss_pred HHHHHHHhCc
Confidence 9999999975
|
Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity. |
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
Probab=98.85 E-value=5e-07 Score=88.38 Aligned_cols=263 Identities=16% Similarity=0.112 Sum_probs=135.7
Q ss_pred cccccccccccccCCCC---------C---hhhHHHHHHHHHhCCcEEEecccCCCC-CCHHHHHHHHHHHhcccceeee
Q 009282 106 GGIDPHTHLAMEFMGSE---------T---IDDFFSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYG 172 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~---------~---~~~~~~~~~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 172 (538)
|++.+|=|+...+.+.. . .+.....+..+.++|||++++.+.... .......+...+.+.+.+...|
T Consensus 1 g~~~~heh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~~~~~g~~v~~~~G 80 (293)
T cd00530 1 GVTLTHEHLIIDSSGFVRDPPEVDDFDLADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEVARATGVNIVAATG 80 (293)
T ss_pred CcccccCCeeecChhhccCcccccccchhhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHHHHHhCCcEEEecc
Confidence 67788888876632211 1 122233456678899999999875422 2233333333333334455555
Q ss_pred eeeeeec---CChhhHHHHHH----HHHH----cCC--cEEEEE-eeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 173 FHMAITK---WDEVVSDEMEV----MVKE----KGI--NSFKFF-MAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 173 ~~~~~~~---~~~~~~~~~~~----~~~~----~g~--~~ik~~-~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
++..... .......++.+ .... .+. ..++.. .++ .......+.+++.++.|+++|+++++|+...
T Consensus 81 ~hp~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~IGEigld~-~~~~~q~~~f~~~~~lA~~~~~Pv~iH~~~~ 159 (293)
T cd00530 81 FYKDAFYPEWVRLRSVEELTDMLIREIEEGIEGTGIKAGIIKEAGGSP-AITPLEEKVLRAAARAQKETGVPISTHTQAG 159 (293)
T ss_pred cCCCccChHHHhhCCHHHHHHHHHHHHHhccccCCcCceEEEEeecCC-CCCHHHHHHHHHHHHHHHHHCCeEEEcCCCC
Confidence 5543211 11111122221 1111 111 223222 222 2222335678899999999999999999653
Q ss_pred -hhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccc
Q 009282 239 -DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (538)
Q Consensus 239 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~ 317 (538)
....+.++.+.+.|+. ..++.+.|+....+.+.+..+.+.|..+..+....
T Consensus 160 ~~~~~~~l~~l~~~g~~----------------------------~~~~vi~H~~~~~~~~~~~~~~~~G~~i~~~~~~~ 211 (293)
T cd00530 160 LTMGLEQLRILEEEGVD----------------------------PSKVVIGHLDRNDDPDYLLKIAALGAYLEFDGIGK 211 (293)
T ss_pred ccccHHHHHHHHHcCCC----------------------------hhheEEeCCCCCCCHHHHHHHHhCCCEEEeCCCCc
Confidence 2222333333332321 12357889973223377888888997766553220
Q ss_pred ccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCC--ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhh
Q 009282 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE 395 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~ 395 (538)
.. ....++ .......++++++.|. .+.++||.+...+. +.. .+-.+...
T Consensus 212 ~~-----------------~~~~~~--~~~~~~~l~~~~~~~~~d~ill~TD~p~~~~~-------~~~---~~~~~~~~ 262 (293)
T cd00530 212 DK-----------------IFGYPS--DETRADAVKALIDEGYGDRLLLSHDVFRKSYL-------EKR---YGGHGYDY 262 (293)
T ss_pred cc-----------------ccCCCC--HHHHHHHHHHHHHCCCcCCEEEeCCcCchhhh-------hhc---cCCCChHH
Confidence 00 000000 0112345778888887 66999996543221 011 11112122
Q ss_pred hHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHc
Q 009282 396 RMHLVWDTMVESGQISVTDYVRLTSTECARIF 427 (538)
Q Consensus 396 ~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~l 427 (538)
+...+.......|++.+++.++.|.||+++|
T Consensus 263 -~~~~~~~~~~~~g~~~e~i~~~~~~N~~~lf 293 (293)
T cd00530 263 -ILTRFIPRLRERGVTEEQLDTILVENPARFL 293 (293)
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHCHHHhC
Confidence 2222223445567999999999999999875
|
PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active. |
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-07 Score=84.14 Aligned_cols=244 Identities=20% Similarity=0.164 Sum_probs=146.3
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecCC--hhh
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWD--EVV 184 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 184 (538)
|||+|+|+... ...++.......+...||+-+...+.... .........+..+..+...|+|... ... ++.
T Consensus 3 liDtH~HL~~~----~~~~d~~~vi~~a~~~gv~~~~~~g~~~~--~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~~ 75 (256)
T COG0084 3 LIDTHCHLDFE----EFDEDRDEVIARAREAGVKKMVVVGTDLE--DFKRALELAEKYPNVYAAVGVHPLD-ADEHSEED 75 (256)
T ss_pred cEEeeeCCCch----hhcCCHHHHHHHHHHcCCcEEEEeecCHH--HHHHHHHHHHhCCCeEEEEeeCCCc-cccccHHH
Confidence 79999999864 22334455577888999999887654322 2233334444445666777777654 322 566
Q ss_pred HHHHHHHHHH-cCCcEEE-EEeeeCCCcc----CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccc
Q 009282 185 SDEMEVMVKE-KGINSFK-FFMAYKGSFM----INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (538)
Q Consensus 185 ~~~~~~~~~~-~g~~~ik-~~~~~~~~~~----~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~ 258 (538)
+..+.+++.. ..+..++ +.++|.-... ...+.+++.++.|+++++++.+|+.+... +..+.+.+.+.
T Consensus 76 ~~~l~~~~~~~~~vvaIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R~A~~--d~~~iL~~~~~----- 148 (256)
T COG0084 76 LEELEQLAEHHPKVVAIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTRDAHE--DTLEILKEEGA----- 148 (256)
T ss_pred HHHHHHHHhcCCCeEEEEecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEccccHH--HHHHHHHhcCC-----
Confidence 7777777743 4555554 3334432211 14577888999999999999999976422 33333322221
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccccee
Q 009282 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (538)
Q Consensus 259 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
..-.+.||.+.+. +.++.+.+.|..++.+... .|..+
T Consensus 149 -------------------------~~~gi~HcFsGs~-e~a~~~~d~G~yisisG~i-------------tfk~a---- 185 (256)
T COG0084 149 -------------------------PVGGVLHCFSGSA-EEARKLLDLGFYISISGIV-------------TFKNA---- 185 (256)
T ss_pred -------------------------CCCEEEEccCCCH-HHHHHHHHcCeEEEECcee-------------ecCCc----
Confidence 1235889988776 8899999999877665443 11110
Q ss_pred ecCCCCCcccHHHHHHHHhc--CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHH
Q 009282 339 MSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (538)
Q Consensus 339 ~~p~~r~~~~~~~l~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal 416 (538)
..+++..+. =-.+.+-||++-..+. |+....+ --......+..+.+..+++++++-
T Consensus 186 -----------~~~~ev~~~iPldrLL~ETDsPyl~P~-------p~rGkrN----eP~~v~~v~~~iAelk~~~~eeva 243 (256)
T COG0084 186 -----------EKLREVARELPLDRLLLETDAPYLAPV-------PYRGKRN----EPAYVRHVAEKLAELKGISAEEVA 243 (256)
T ss_pred -----------HHHHHHHHhCCHhHeEeccCCCCCCCc-------CCCCCCC----CchHHHHHHHHHHHHhCCCHHHHH
Confidence 112222221 1146788997655443 2221100 011233334344455679999999
Q ss_pred HHHhHhHHHHcCC
Q 009282 417 RLTSTECARIFNV 429 (538)
Q Consensus 417 ~~aT~~~A~~lg~ 429 (538)
+..|.|.-+++++
T Consensus 244 ~~t~~N~~~lf~~ 256 (256)
T COG0084 244 EITTENAKRLFGL 256 (256)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998874
|
|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.6e-07 Score=85.84 Aligned_cols=249 Identities=18% Similarity=0.156 Sum_probs=138.9
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (538)
+||+|+|+...... ...++.......+...||..++..+... ..........+..+..+..+|+|..... .++.++
T Consensus 3 ~iDtH~Hl~~~~~~-~~~~d~~~vl~~a~~~gv~~~~~~~~~~--~~~~~~~~l~~~~~~v~~~~GiHP~~~~-~~~~~~ 78 (265)
T PRK10812 3 LVDSHCHLDGLDYQ-SLHKDVDDVLAKAAARDVKFCLAVATTL--PGYRHMRDLVGERDNVVFSCGVHPLNQD-EPYDVE 78 (265)
T ss_pred eEEeccCCCCccch-hhhcCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHhhCCCeEEEEEeCCCCCC-ChhHHH
Confidence 79999999642000 1123455567888899998887554321 1222222223333344555666653322 233455
Q ss_pred HHHHHHHHcCCcEE-EEEeeeCC---CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009282 187 EMEVMVKEKGINSF-KFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (538)
Q Consensus 187 ~~~~~~~~~g~~~i-k~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (538)
.+.++.....+.++ .+.+++.. ......+.+++.++.|.++++++.+|+.... .+.++.+.+.+..
T Consensus 79 ~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r~a~--~~~l~iL~~~~~~-------- 148 (265)
T PRK10812 79 ELRRLAAEEGVVAMGETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTRDAR--ADTLAILREEKVT-------- 148 (265)
T ss_pred HHHHHhcCCCEEEEEeeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCch--HHHHHHHHhhcCC--------
Confidence 56665533344455 34455531 1122356778889999999999999996542 2333333222211
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCC
Q 009282 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (538)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (538)
..+ .+.|+.+.+. +.++.+.+.|..+..+... .+.
T Consensus 149 --------------------~~~-~v~H~fsG~~-~~a~~~~~~G~~is~~g~~-------------t~~---------- 183 (265)
T PRK10812 149 --------------------DCG-GVLHCFTEDR-ETAGKLLDLGFYISFSGIV-------------TFR---------- 183 (265)
T ss_pred --------------------CCC-EEEEeecCCH-HHHHHHHHCCCEEEECeee-------------ecC----------
Confidence 112 3578876654 7888888889877654321 000
Q ss_pred CCCcccHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHh
Q 009282 343 IRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420 (538)
Q Consensus 343 ~r~~~~~~~l~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT 420 (538)
....++++++.+ -++.+.||.+...+. ++....+. -..+...++.+....|++.+++.+..+
T Consensus 184 -----~~~~~~~~~~~ipldrlLlETD~P~~~p~-------~~~g~~n~----P~~i~~v~~~ia~l~g~~~eei~~~~~ 247 (265)
T PRK10812 184 -----NAEQLRDAARYVPLDRLLVETDSPYLAPV-------PHRGKENQ----PAMVRDVAEYMAVLKGVSVEELAQVTT 247 (265)
T ss_pred -----ccHHHHHHHHhCChhhEEEecCCCCCCCc-------CCCCCCCC----cHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 113355666654 478999997533221 11111110 112333333333445699999999999
Q ss_pred HhHHHHcCCC
Q 009282 421 TECARIFNVY 430 (538)
Q Consensus 421 ~~~A~~lg~~ 430 (538)
.|+.++|+++
T Consensus 248 ~N~~~lf~~~ 257 (265)
T PRK10812 248 DNFARLFHID 257 (265)
T ss_pred HHHHHHHCCC
Confidence 9999999983
|
|
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.3e-07 Score=89.07 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEe
Q 009282 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (538)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h 290 (538)
..+.+.+.++++.|+++|+++++|+.+..........+... |.. .+.|
T Consensus 178 ~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~l-------------------------------g~~-ri~H 225 (340)
T PRK09358 178 GFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDEL-------------------------------GAE-RIGH 225 (340)
T ss_pred CCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHc-------------------------------CCc-ccch
Confidence 35778999999999999999999996432111111111111 222 2567
Q ss_pred ccCHH-HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCC
Q 009282 291 VMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (538)
Q Consensus 291 ~~~~~-~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~ 369 (538)
+.... ..+.++.+++.|+.+..||.+. +..+..-.+ ...+++.++++|+++++|||.+
T Consensus 226 g~~l~~~~~~~~~l~~~gi~v~~cP~Sn-------------~~l~~~~~~--------~~~pi~~l~~~Gv~v~lgTD~~ 284 (340)
T PRK09358 226 GVRAIEDPALMARLADRRIPLEVCPTSN-------------VQTGAVPSL--------AEHPLKTLLDAGVRVTINTDDP 284 (340)
T ss_pred hhhhccCHHHHHHHHHcCCeEEECCCcc-------------ccccccCCc--------ccChHHHHHHCCCEEEECCCCC
Confidence 76653 1267999999999999999863 222110000 1123899999999999999975
Q ss_pred CCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
.... ..+...+..+....+++++++ ..++.|+.+...++
T Consensus 285 ~~~~---------------------~~l~~e~~~~~~~~~l~~~el-~~l~~nai~~sf~~ 323 (340)
T PRK09358 285 LVFG---------------------TTLTEEYEALAEAFGLSDEDL-AQLARNALEAAFLS 323 (340)
T ss_pred cccC---------------------CCHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHCCC
Confidence 4321 122233333444446999995 55689998876663
|
|
| >PRK09875 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-06 Score=83.14 Aligned_cols=260 Identities=15% Similarity=0.104 Sum_probs=143.4
Q ss_pred cccccccccccccCCC--------CChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHH-Hhcccceeeeeeee
Q 009282 106 GGIDPHTHLAMEFMGS--------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEK-KAKNSCMDYGFHMA 176 (538)
Q Consensus 106 GlID~H~H~~~~~~~~--------~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 176 (538)
|+..+|=|+...+.+. ...+.....++...+.|+.|++|+....-......+....+ .+-+.....|++..
T Consensus 7 G~tl~HEHl~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~ 86 (292)
T PRK09875 7 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 86 (292)
T ss_pred CcceecCCeEecChhhcCCcccccccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEEEcCcCCCC
Confidence 8888999987653221 11222334455667899999999864443323333333333 33334445555532
Q ss_pred eec------CC-hhhHHHHHHHHHHcC-------CcEE-EEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009282 177 ITK------WD-EVVSDEMEVMVKEKG-------INSF-KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (538)
Q Consensus 177 ~~~------~~-~~~~~~~~~~~~~~g-------~~~i-k~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~ 241 (538)
... .+ ++..+.+.+-. ..| +..+ ++..++........+.+++..+++.+.|.++.+|.......
T Consensus 87 ~~~p~~~~~~~~e~la~~~i~ei-~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~Aaa~a~~~TG~pi~~Ht~~~~~g 165 (292)
T PRK09875 87 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGSSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 165 (292)
T ss_pred ccCCHHHhcCCHHHHHHHHHHHH-HHhhccCCCcccEEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCcEEEcCCCccch
Confidence 211 11 12222222222 122 2334 33322211122234556677777889999999997554333
Q ss_pred HHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccccccc
Q 009282 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (538)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~ 321 (538)
.+.++.+.+.|+.. .++.+.|+....+.+.+..+.+.|+.+-.+.+-.
T Consensus 166 ~e~l~il~e~Gvd~----------------------------~rvvi~H~d~~~d~~~~~~l~~~G~~l~fD~~g~---- 213 (292)
T PRK09875 166 LEQLALLQAHGVDL----------------------------SRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK---- 213 (292)
T ss_pred HHHHHHHHHcCcCc----------------------------ceEEEeCCCCCCCHHHHHHHHHcCCEEEeccCCC----
Confidence 33344444444421 2678999976555688888999998876653210
Q ss_pred CcccccCCCcccccceeecCCCCCcccHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHH
Q 009282 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~ 399 (538)
. ...|. ....+.+..+.+.| -++.+++|....+. ..++|-.|....+..
T Consensus 214 --------------~-~~~pd---~~r~~~i~~L~~~Gy~drilLS~D~~~~~~-----------~~~~gg~G~~~i~~~ 264 (292)
T PRK09875 214 --------------N-SYYPD---EKRIAMLHALRDRGLLNRVMLSMDITRRSH-----------LKANGGYGYDYLLTT 264 (292)
T ss_pred --------------c-ccCCH---HHHHHHHHHHHhcCCCCeEEEeCCCCCccc-----------ccccCCCChhHHHHH
Confidence 0 00111 01235567788887 47888999643321 122333444444555
Q ss_pred HHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 400 VWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 400 ~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
.+..+.+. |++.+++=++...||+++|+
T Consensus 265 ~ip~L~~~-Gvse~~I~~m~~~NP~r~~~ 292 (292)
T PRK09875 265 FIPQLRQS-GFSQADVDVMLRENPSQFFQ 292 (292)
T ss_pred HHHHHHHc-CCCHHHHHHHHHHCHHHHhC
Confidence 55444455 59999999999999999874
|
|
| >KOG2902 consensus Dihydroorotase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.1e-06 Score=74.11 Aligned_cols=285 Identities=15% Similarity=0.097 Sum_probs=165.0
Q ss_pred eeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC--CHHHHHHHHHHHhcccceeeeeeeeeecC
Q 009282 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMAITKW 180 (538)
Q Consensus 103 v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (538)
-+|+.-|+|+|+..+.+ . +.+ .-....+||.-..-|..-.+. ...+.+........ ......+.+...-.
T Consensus 6 ~i~~~~DmHvHlR~g~m--l--~aV---vP~~a~ggvs~AyvMPNL~PPiTt~da~i~YkK~i~k-L~skttfLMslYLs 77 (344)
T KOG2902|consen 6 TITQPDDMHVHLRDGDM--L--HAV---VPHSASGGVSRAYVMPNLKPPITTTDAAIIYKKFIMK-LPSKTTFLMSLYLS 77 (344)
T ss_pred ecCCccceeEEeccCCe--e--eee---ccccccCceeEEEEcCCCCCCcchHHHHHHHHHHHHh-cCccceeEEEEeec
Confidence 36889999999987611 0 000 112356789888877543332 33333333222211 11111112222222
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc---C--CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009282 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFM---I--NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~---~--~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (538)
.+...+++.+..+..+..++|.|........ . .-..+.-++++.++.|+++.+|-+-+...+
T Consensus 78 ~~ttPe~I~eAa~~~~irgVK~YPaGaTTNS~~GV~~~f~~fyPvf~aMqe~nm~LnvHGEvpps~D------------- 144 (344)
T KOG2902|consen 78 DKTTPEEIREAAESGVIRGVKLYPAGATTNSQDGVTDLFGKFYPVFEAMQEQNMPLNVHGEVPPSID------------- 144 (344)
T ss_pred CCCCHHHHHHHHHhCceeeEEeccCcccccccccccccchhhhHHHHHHHHcCceEEecCCCCCccC-------------
Confidence 2333455556554557788998875421111 1 245667788999999999999987653321
Q ss_pred cccccccCCchHHHHHHHHHHHHHHH-cCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccc
Q 009282 256 PEGHALSRPPLLEGEATTRAIRLAEF-VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
+ .....|..-+..++++... ...++++.||.+.+..+.++.. .+..|.++.++|++++..++... .
T Consensus 145 --~----~Vf~aE~~Flptll~LhqrfP~LKivlEHcTt~dAv~~ve~a--~~~sVaaTvTahHL~Lt~~dwqg-----~ 211 (344)
T KOG2902|consen 145 --G----HVFDAEKIFLPTLLQLHQRFPQLKIVLEHCTTMDAVNFVESA--KEGSVAATVTAHHLLLTRNDWQG-----Q 211 (344)
T ss_pred --C----ceecchhhhHHHHHHHHHhCccceeHHHhcccHHHHHHHHhh--cCCceeeEeehheeEEehhhhcC-----C
Confidence 0 1123344455666666544 4678999999998876766653 46678888999999887665432 2
Q ss_pred cceeecCCCCCcccHHHHHHHHhcCC-ceEEeCCCCCCChhhhhcCccCcccCCCCCcch---hhhHHHHHHHhhhcCCC
Q 009282 335 AKYVMSPPIRASGHNKALQAALATGI-LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI---EERMHLVWDTMVESGQI 410 (538)
Q Consensus 335 ~~~~~~p~~r~~~~~~~l~~~l~~Gv-~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~---~~~~~~~~~~~~~~~~l 410 (538)
..-.+.|-.....+++++-++.-.|- ++-+|||++|+....++.. +|++|. -..++...+.+-++|.|
T Consensus 212 P~nfCkPVaK~e~dr~AlvkAatSg~pkFFfGsDSAPHprs~K~~~--------~~cAGvysqpfA~sy~A~VFde~gaL 283 (344)
T KOG2902|consen 212 PHNFCKPVAKREIDREALVKAATSGSPKFFFGSDSAPHPRSRKESS--------CGCAGVYSQPFALSYYAKVFDEAGAL 283 (344)
T ss_pred CcccccccccCcccHHHHHHHHhcCCCceeecCCCCCCcccccccC--------CCcceeecccchHHHHHHHHhhhchH
Confidence 33446666666677777776666654 7899999999988776542 233332 22344444333345544
Q ss_pred CHHHHHHHHh-HhHHHHcCCCCC
Q 009282 411 SVTDYVRLTS-TECARIFNVYPR 432 (538)
Q Consensus 411 s~~eal~~aT-~~~A~~lg~~~~ 432 (538)
+.|+..| .++-+..++.++
T Consensus 284 ---d~Lk~F~s~fG~~FY~~p~e 303 (344)
T KOG2902|consen 284 ---DKLKAFTSFFGPDFYGLPDE 303 (344)
T ss_pred ---HHHhhhHhhcCcceeccccc
Confidence 5555444 456666676443
|
|
| >PRK11449 putative deoxyribonuclease YjjV; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.1e-06 Score=77.64 Aligned_cols=248 Identities=16% Similarity=0.130 Sum_probs=134.5
Q ss_pred eccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeec-CCh
Q 009282 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDE 182 (538)
Q Consensus 104 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 182 (538)
++.|||+|+|+... . ..++.......+...||+.++.++.... .........+..+..+..+|+|..... ..+
T Consensus 2 ~~~~iD~HcHl~~~--~--~~~~~~~~l~~a~~~gv~~~~~~~~~~~--~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~ 75 (258)
T PRK11449 2 ICRFIDTHCHFDFP--P--FSGDEEASLQRAAQAGVGKIIVPATEAE--NFARVLALAERYQPLYAALGLHPGMLEKHSD 75 (258)
T ss_pred CceEEEeccCCCCh--h--hccCHHHHHHHHHHCCCCEEEEeeCCHH--HHHHHHHHHHhCCCEEEEEeeCcCccccCCH
Confidence 45689999999653 1 1224444567778899998886643211 122222223333344555666654322 233
Q ss_pred hhHHHHHHHHHHc--CCcEEE-EEeeeCCCc---cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCc
Q 009282 183 VVSDEMEVMVKEK--GINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGP 256 (538)
Q Consensus 183 ~~~~~~~~~~~~~--g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~ 256 (538)
+..+.+.++.... .+.+++ +.+++.... ....+.+++.++.|.++++++.+|+.... .+.++.+...+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~aIGEiGLD~~~~~~~~~~Q~~vf~~ql~lA~~~~~Pv~iH~r~a~--~~~~~il~~~~~--- 150 (258)
T PRK11449 76 VSLDQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--DKLAMHLKRHDL--- 150 (258)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecccCCCCCCCCHHHHHHHHHHHHHHHHHhCCCEEEEecCcc--HHHHHHHHhcCC---
Confidence 4455565554222 233343 233332111 12356778889999999999999997542 233333222221
Q ss_pred ccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccc
Q 009282 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAK 336 (538)
Q Consensus 257 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (538)
..-.+.|+.+.+. +.++.+.+.|..++..... .+.
T Consensus 151 ---------------------------~~~~i~H~fsG~~-~~a~~~l~~G~~iS~~g~i-------------t~~---- 185 (258)
T PRK11449 151 ---------------------------PRTGVVHGFSGSL-QQAERFVQLGYKIGVGGTI-------------TYP---- 185 (258)
T ss_pred ---------------------------CCCeEEEcCCCCH-HHHHHHHHCCCEEEeCccc-------------ccc----
Confidence 0113788887765 8888888898776544321 000
Q ss_pred eeecCCCCCcccHHHHHHHHhc--CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHH
Q 009282 337 YVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTD 414 (538)
Q Consensus 337 ~~~~p~~r~~~~~~~l~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~e 414 (538)
....++++++. --.+.+.||++..++. ++..-+ ..-..+...++.+...-++++++
T Consensus 186 -----------~~~~~~~~~~~ipldriL~ETD~P~l~p~-------~~~~~~----n~p~~~~~~~~~ia~l~~~~~~e 243 (258)
T PRK11449 186 -----------RASKTRDVIAKLPLASLLLETDAPDMPLN-------GFQGQP----NRPEQAARVFDVLCELRPEPADE 243 (258)
T ss_pred -----------CcHHHHHHHHhCChhhEEEecCCCCCCCC-------CCCCCC----CCChHHHHHHHHHHHHHCcCHHH
Confidence 00123333332 1257999997644321 111110 00112333443434455699999
Q ss_pred HHHHHhHhHHHHcCC
Q 009282 415 YVRLTSTECARIFNV 429 (538)
Q Consensus 415 al~~aT~~~A~~lg~ 429 (538)
+.+..+.|..++||+
T Consensus 244 l~~~~~~N~~~lf~~ 258 (258)
T PRK11449 244 IAEVLLNNTYTLFNV 258 (258)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999999874
|
|
| >PRK10425 DNase TatD; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-05 Score=76.77 Aligned_cols=251 Identities=11% Similarity=0.052 Sum_probs=135.0
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeee-cCChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (538)
|||+|+|+... . ..++.......+...||..++..+.... .........+..+..+..+|+|.... ...++..
T Consensus 1 ~iDtH~HL~~~--~--~~~d~~~vl~~a~~~gv~~~i~~~~~~~--~~~~~~~l~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (258)
T PRK10425 1 MFDIGVNLTSS--Q--FAKDRDDVVARAFAAGVNGMLITGTNLR--ESQQAQKLARQYPSCWSTAGVHPHDSSQWQAATE 74 (258)
T ss_pred CEEeeeCcCCh--h--hhccHHHHHHHHHHCCCCEEEEeCCCHH--HHHHHHHHHHhCCCEEEEEEeCcCccccCCHHHH
Confidence 68999998643 1 1245556678888899988876543311 22222222333334455667665432 2234445
Q ss_pred HHHHHHHHHcCCcEEE-EEeeeCCC---ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVKEKGINSFK-FFMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~~~g~~~ik-~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
+.+..+.+.....+++ +.+++... .....+.+++.++.|.++++++.+|+.... ++.++.+....
T Consensus 75 ~~l~~~~~~~~~vaIGEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r~a~--~~~l~iL~~~~--------- 143 (258)
T PRK10425 75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCRDAH--ERFMALLEPWL--------- 143 (258)
T ss_pred HHHHHhccCCCEEEEeeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCch--HHHHHHHHHhc---------
Confidence 5565555333333443 33444211 111246778889999999999999997442 23332221110
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
...+-.+.|+.+.+. +.++.+.+.|..+..+.... + . +
T Consensus 144 --------------------~~~~~~i~H~fsG~~-~~~~~~l~~G~~~si~g~i~-------------~-----~---~ 181 (258)
T PRK10425 144 --------------------DKLPGAVLHCFTGTR-EEMQACLARGLYIGITGWVC-------------D-----E---R 181 (258)
T ss_pred --------------------cCCCCeEEEecCCCH-HHHHHHHHCCCEEEECceee-------------c-----c---c
Confidence 011114679988775 88888888898776543210 0 0 0
Q ss_pred CCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHH
Q 009282 342 PIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~a 419 (538)
....++++++. . -.+.+-||.+-..+. ++...+.|-..--..+...+..+...-+++.+++.+..
T Consensus 182 ------~~~~~~~~~~~ipldrlLlETDaP~l~P~-------~~~~~~~~~~n~P~~i~~v~~~iA~l~~~~~~~v~~~~ 248 (258)
T PRK10425 182 ------RGLELRELLPLIPAERLLLETDAPYLLPR-------DLTPKPASRRNEPAFLPHILQRIAHWRGEDAAWLAATT 248 (258)
T ss_pred ------ccHHHHHHHHhCChHHEEEeccCCCCCCC-------CcCCCCCCCCCCcHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 00112333221 1 257889996533221 12110011111112344444455555679999999999
Q ss_pred hHhHHHHcCC
Q 009282 420 STECARIFNV 429 (538)
Q Consensus 420 T~~~A~~lg~ 429 (538)
+.|.-+++|+
T Consensus 249 ~~N~~~lf~~ 258 (258)
T PRK10425 249 DANARTLFGL 258 (258)
T ss_pred HHHHHHHhCc
Confidence 9999898874
|
|
| >PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3 | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.7e-06 Score=78.58 Aligned_cols=267 Identities=16% Similarity=0.140 Sum_probs=138.3
Q ss_pred cccccccccccccCCC--------C----ChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHH-HHhcccceeee
Q 009282 106 GGIDPHTHLAMEFMGS--------E----TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE-KKAKNSCMDYG 172 (538)
Q Consensus 106 GlID~H~H~~~~~~~~--------~----~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 172 (538)
|+..+|=|+...+.+. . ..+.....++.+.+.|+.|++|+....-......+.... +.+-......|
T Consensus 7 G~tl~HEHl~~d~~~~~~~~~~~~~~~~~~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG 86 (308)
T PF02126_consen 7 GFTLMHEHLLIDLSGFYKDPDEALDDRDEDVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTG 86 (308)
T ss_dssp SSEEEEEESEEETTTHHHHTGGGGCGHHHHHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEE
T ss_pred CCeecccCeeecChhhccCCCcchhhhhhhHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCC
Confidence 7788899987653221 1 112222345556789999999986544332333333333 33344555666
Q ss_pred eeeeeecCC---hhhHHHHHHHH-H--HcCCc-------EEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChh
Q 009282 173 FHMAITKWD---EVVSDEMEVMV-K--EKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGD 239 (538)
Q Consensus 173 ~~~~~~~~~---~~~~~~~~~~~-~--~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~ 239 (538)
++....... ....+++.++. + ..|.+ .+|...++..........+++...++++.|.++++|.....
T Consensus 87 ~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~ 166 (308)
T PF02126_consen 87 FYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGT 166 (308)
T ss_dssp E-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTG
T ss_pred CCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCC
Confidence 665322111 11122222221 1 23433 56665444222222345566667777888999999996654
Q ss_pred -hHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccc
Q 009282 240 -AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG 318 (538)
Q Consensus 240 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~ 318 (538)
...+.++.+.+.|+.. .++++.|+....+.+.+..+.+.|+.+..+..-..
T Consensus 167 ~~~~e~~~il~e~Gv~~----------------------------~rvvigH~D~~~D~~y~~~la~~G~~l~~D~~g~~ 218 (308)
T PF02126_consen 167 RMGLEQLDILEEEGVDP----------------------------SRVVIGHMDRNPDLDYHRELADRGVYLEFDTIGRE 218 (308)
T ss_dssp TCHHHHHHHHHHTT--G----------------------------GGEEETSGGGST-HHHHHHHHHTT-EEEETTTT-B
T ss_pred cCHHHHHHHHHHcCCCh----------------------------hHeEEeCCCCCCCHHHHHHHHhcCCEEEecCCccc
Confidence 4556666666666642 25788998866666888889999988776544211
Q ss_pred cccCcccccCCCcccccceeecCCCCCc---ccHHHHHHHHhcCC--ceEEeCCCCCCChhhhhcCccCcccCCCCCcch
Q 009282 319 LVLDDSWLWHSDFVTAAKYVMSPPIRAS---GHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393 (538)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~---~~~~~l~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~ 393 (538)
+. +...+|..... ...+.+..+.++|. .+.++.|..-.. ...++|..|.
T Consensus 219 ~~---------------g~~~~~~~~~~~d~~ri~~l~~L~~~Gy~~qIlLS~D~~~k~-----------~~~~~gg~g~ 272 (308)
T PF02126_consen 219 FS---------------GKDKNPRVGYPPDEERIELLKELIEEGYADQILLSHDIGRKS-----------RLYRYGGGGY 272 (308)
T ss_dssp -T---------------TTTTCHSCTTS-HHHHHHHHHHHHHTTTGGGEEE-HHHESEE-----------GSSSCCHHHH
T ss_pred cc---------------CcccCccCCCCCHHHHHHHHHHHHHcCCcCcEEEeccccccc-----------cccccCCCCc
Confidence 10 00010111111 12355678888877 789998854211 1122332222
Q ss_pred hhh--HHHHHHHhhhcCCCCHHHHHHHHhHhHHHHc
Q 009282 394 EER--MHLVWDTMVESGQISVTDYVRLTSTECARIF 427 (538)
Q Consensus 394 ~~~--~~~~~~~~~~~~~ls~~eal~~aT~~~A~~l 427 (538)
... +...+-.+ .+.|+|.++.=++...||+++|
T Consensus 273 ~~~~i~~~fiP~L-~~~Gv~~~~i~~ilv~NP~r~l 307 (308)
T PF02126_consen 273 GYIYILTRFIPRL-KERGVSEEDIDKILVENPARIL 307 (308)
T ss_dssp TTTHHHHTHHHHH-HHTTS-HHHHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHHHHHHHHCHHHHc
Confidence 111 12222222 3346999999999999999987
|
1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A .... |
| >PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-05 Score=74.18 Aligned_cols=244 Identities=17% Similarity=0.144 Sum_probs=131.6
Q ss_pred cccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcc-cceeeeeeeeeecC-ChhhH
Q 009282 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-SCMDYGFHMAITKW-DEVVS 185 (538)
Q Consensus 108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 185 (538)
||+|.|+... . ..++.......+...|++.++.+..... ............+. ....+|+|...... .++..
T Consensus 1 iD~H~Hl~~~--~--~~~~~~~~~~~~~~~g~~~~i~~~~~~~--~~~~~~~~~~~~~~~v~~~~GiHP~~~~~~~~~~~ 74 (255)
T PF01026_consen 1 IDAHCHLDSP--R--FEEDRPEVLERAREAGVSAIIIVSTDPE--DWERVLELASQYPDRVYPALGIHPWEAHEVNEEDL 74 (255)
T ss_dssp EEEEE-TTSG--G--GTTTHHHHHHHHHHTTEEEEEEEESSHH--HHHHHHHHHHHTTTEEEEEE---GGGGGGHSHHHH
T ss_pred CcCccCCCCh--h--hCcCHHHHHHHHHHcCCCEEEEcCCCHH--HhHHHHHHHhcCCCeEEEEecCCcchhhhhhHHHH
Confidence 7999999763 1 1233445568888999999986644322 22222222333222 55566666543322 34445
Q ss_pred HHHHHH--HHHcCCcEEE-EEeeeCCC----ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccc
Q 009282 186 DEMEVM--VKEKGINSFK-FFMAYKGS----FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 258 (538)
Q Consensus 186 ~~~~~~--~~~~g~~~ik-~~~~~~~~----~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~ 258 (538)
+.+.++ .......+++ +.+++... .....+.+++.++.|.++++++.+|+.... .+.++.+.+.+..
T Consensus 75 ~~l~~l~~~~~~~~~aIGEiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r~a~--~~~l~il~~~~~~---- 148 (255)
T PF01026_consen 75 EELEELINLNRPKVVAIGEIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCRKAH--EELLEILKEYGPP---- 148 (255)
T ss_dssp HHHHHHHHHTSTTEEEEEEEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEESHH--HHHHHHHHHTTGG----
T ss_pred HHHHHHHHhccccceeeeeeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecCCcH--HHHHHHHHhcccc----
Confidence 666666 3334445554 44555211 112356778889999999999999997642 2334333333211
Q ss_pred ccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccccee
Q 009282 259 HALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (538)
Q Consensus 259 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
+. -.+.|+.+.+. +.++.+.+.|+.++.+.... +..
T Consensus 149 ------------------------~~-~~i~H~f~g~~-~~~~~~~~~g~~~S~~~~~~-------------~~~----- 184 (255)
T PF01026_consen 149 ------------------------NL-RVIFHCFSGSP-EEAKKFLDLGCYFSFSGAIT-------------FKN----- 184 (255)
T ss_dssp ------------------------TS-EEEETT--S-H-HHHHHHHHTTEEEEEEGGGG-------------STT-----
T ss_pred ------------------------ce-eEEEecCCCCH-HHHHHHHhcCceEEeccccc-------------ccc-----
Confidence 11 46889877665 77777778887776655420 000
Q ss_pred ecCCCCCcccHHHHHHHHhc--CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHH
Q 009282 339 MSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYV 416 (538)
Q Consensus 339 ~~p~~r~~~~~~~l~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal 416 (538)
.....++++. .-.+.+-||.+-..+. ++. |....-..+...++.+.+..+++++++.
T Consensus 185 ----------~~~~~~~~~~ip~drillETD~P~~~~~-------~~~----~~~~~p~~i~~~~~~la~~~~~~~e~~~ 243 (255)
T PF01026_consen 185 ----------SKKVRELIKAIPLDRILLETDAPYLAPD-------PYR----GKPNEPSNIPKVAQALAEIKGISLEELA 243 (255)
T ss_dssp ----------SHHHHHHHHHS-GGGEEEE-BTTSSECT-------TST----TSE--GGGHHHHHHHHHHHHTSTHHHHH
T ss_pred ----------cHHHHHHHhcCChhhEEEcCCCCcCCcc-------ccC----CCCCChHHHHHHHHHHHHHcCCCHHHHH
Confidence 0112333322 2368999996433221 111 1011122344445445555569999999
Q ss_pred HHHhHhHHHHcC
Q 009282 417 RLTSTECARIFN 428 (538)
Q Consensus 417 ~~aT~~~A~~lg 428 (538)
+..+.|..+++|
T Consensus 244 ~~~~~N~~r~f~ 255 (255)
T PF01026_consen 244 QIIYENAKRLFG 255 (255)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999999886
|
; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A .... |
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00031 Score=62.45 Aligned_cols=231 Identities=15% Similarity=0.142 Sum_probs=124.4
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-----CHHHHHHHHH--------HHhcccceeeee
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYE--------KKAKNSCMDYGF 173 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~ 173 (538)
+||+|+|+... +.+++. ....+||-+++.....+.. ...+.++... +.+-+..+.+|.
T Consensus 2 ~iD~HiH~d~r-----~~eDle----kMa~sGI~~Vit~AhdP~~~~~~~v~~~h~~rl~~~E~~Ra~~~Gl~~~vavGv 72 (254)
T COG1099 2 YIDSHIHLDVR-----GFEDLE----KMALSGIREVITLAHDPYPMKTAEVYLDHFRRLLGVEPERAEKAGLKLKVAVGV 72 (254)
T ss_pred ccccccccccc-----cHHHHH----HHHHhChhhhhhcccCCCCcccHHHHHHHHHHHHccchhhHHhhCceeeEEecc
Confidence 69999999654 445543 3445566666544322221 1111111111 112224555666
Q ss_pred eeeeecCC-hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCC---HHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHH
Q 009282 174 HMAITKWD-EVVSDEMEVMVKEKGINSFKFFMAYKGSFMIN---DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (538)
Q Consensus 174 ~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~---~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~ 249 (538)
+....+.+ ++.+.++..+....++.+++.. |....+ .+.++..++.|+++++++.+|.+..+..
T Consensus 73 HPr~iP~e~~~~l~~L~~~l~~e~VvAiGEi----GLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK~-------- 140 (254)
T COG1099 73 HPRAIPPELEEVLEELEELLSNEDVVAIGEI----GLEEATDEEKEVFREQLELARELDVPVIVHTPRRNKK-------- 140 (254)
T ss_pred CCCCCCchHHHHHHHHHhhcccCCeeEeeec----ccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcch--------
Confidence 65443333 4566666666633344444321 222223 5667888999999999999999654321
Q ss_pred HcCCCCcccccccCCchHHHHHHHHHHHHHHHcCC---CEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccc
Q 009282 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT---PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (538)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~ 326 (538)
+.+.+.+++....+. .+.+.|+.. +.++.+-+.+.++-.+..|-
T Consensus 141 --------------------e~t~~ildi~~~~~l~~~lvvIDH~N~----etv~~vld~e~~vGlTvqPg--------- 187 (254)
T COG1099 141 --------------------EATSKILDILIESGLKPSLVVIDHVNE----ETVDEVLDEEFYVGLTVQPG--------- 187 (254)
T ss_pred --------------------hHHHHHHHHHHHcCCChhheehhcccH----HHHHHHHhccceEEEEecCC---------
Confidence 223344444444433 356788865 66666666776654444431
Q ss_pred cCCCcccccceeecCCCCCcccHHHHHHHHhcC-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh
Q 009282 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405 (538)
Q Consensus 327 ~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~ 405 (538)
++.+ .+++.-..+.| -++.+.||......+ +++ .+... ..+
T Consensus 188 -----------Klt~-------~eAveIV~ey~~~r~ilnSD~~s~~sd-------~la------------vprta-l~m 229 (254)
T COG1099 188 -----------KLTV-------EEAVEIVREYGAERIILNSDAGSAASD-------PLA------------VPRTA-LEM 229 (254)
T ss_pred -----------cCCH-------HHHHHHHHHhCcceEEEeccccccccc-------chh------------hhHHH-HHH
Confidence 1111 12233233335 678888884432221 221 12211 112
Q ss_pred hcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 406 ESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 406 ~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
...|+..++.-+-+-.|+-+++|+
T Consensus 230 ~~~gv~~~~i~kV~~~NA~~~~~l 253 (254)
T COG1099 230 EERGVGEEEIEKVVRENALSFYGL 253 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCc
Confidence 344699999999999999988887
|
|
| >COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00055 Score=64.21 Aligned_cols=156 Identities=17% Similarity=0.086 Sum_probs=92.3
Q ss_pred HHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcccceeeeeeeeeec------CC-hhhHHHHHHHHHHcC------
Q 009282 131 QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITK------WD-EVVSDEMEVMVKEKG------ 196 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~g------ 196 (538)
.....+.|+-|++|+....-. +.....+-..+.+.+.....|++..... .+ ++..+.+..-. +.|
T Consensus 54 ~~~~~a~Gg~TIVD~T~~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p~~~~~~~i~~~ae~~v~ei-~~Gi~gT~i 132 (316)
T COG1735 54 LKRLMARGGQTIVDATNIGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHPEYFALRPIEELAEFVVKEI-EEGIAGTGI 132 (316)
T ss_pred HHHHHHcCCCeEeeCCccccCcCHHHHHHHHHHhCCcEEEeccccccccchhHHhhCCHHHHHHHHHHHH-HhcccCCcc
Confidence 445678999999999744433 3333333333444445555555443221 11 12222222222 233
Q ss_pred -CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 197 -INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 197 -~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
+..+|..-.+++........+++..++.++.|.|+.+|.+......+.++.+.+.|+..
T Consensus 133 kAGiIk~~~~~~~iTp~Eek~lrAaA~A~~~Tg~Pi~tHt~~gt~g~eq~~il~~egvdl-------------------- 192 (316)
T COG1735 133 KAGIIKEAGGSPAITPLEEKSLRAAARAHKETGAPISTHTPAGTMGLEQLRILAEEGVDL-------------------- 192 (316)
T ss_pred ccceeeeccCcccCCHHHHHHHHHHHHHhhhcCCCeEEeccchhhhHHHHHHHHHcCCCh--------------------
Confidence 44556554444432333455666677777889999999987766666666666666532
Q ss_pred HHHHHHcCCCEEEEecc-CHHHHHHHHHHHHcCCcEEEecc
Q 009282 276 IRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPV 315 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~-~~~~~~~i~~~~~~g~~v~~~~~ 315 (538)
.++.+.|+. +.++....+.++.+|+.+..+..
T Consensus 193 --------~~v~igH~d~n~dd~~y~~~l~~~Ga~l~fD~i 225 (316)
T COG1735 193 --------RKVSIGHMDPNTDDVYYQKKLADRGAFLEFDRI 225 (316)
T ss_pred --------hHeeEeccCCCCChHHHHHHHHhcCceEEeccc
Confidence 256899998 66666778888888987765544
|
|
| >PF12890 DHOase: Dihydro-orotase-like; InterPro: IPR024403 This entry represents a small family of dihydro-orotase-like proteins from bacteria | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.3e-05 Score=61.54 Aligned_cols=135 Identities=24% Similarity=0.290 Sum_probs=83.5
Q ss_pred CCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeec
Q 009282 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (538)
Q Consensus 100 G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (538)
||+++|||||.|+|+..+ |....+.+. . |++.|+...+.. .+ ++.
T Consensus 1 ~kli~~g~vd~hVhlrep--g~~~keti~--------t---T~~ampnt~paP------------------a~----itv 45 (142)
T PF12890_consen 1 GKLILPGLVDVHVHLREP--GFEAKETIE--------T---TWCAMPNTFPAP------------------AG----ITV 45 (142)
T ss_pred Cceeehhhhhhhhhhhcc--cchhhhhhh--------c---eeeecCccCCCC------------------cc----eee
Confidence 689999999999999887 544333332 1 676664332221 00 000
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHH----HHHHHcCCCC
Q 009282 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ----KRMIELGITG 255 (538)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~----~~~~~~g~~~ 255 (538)
+..|...+ .++.++........+.+.++. .+.+..+..|++++....... +....+|+.
T Consensus 46 -------------~~~~~e~~--afsddg~giq~~~lm~eamk~-a~l~~~i~ahceDd~l~~~g~v~~ge~~q~~g~~- 108 (142)
T PF12890_consen 46 -------------EDDGEEAF--AFSDDGYGIQIQLLMYEAMKK-AELDQEIVAHCEDDELTNGGVVHDGELPQFLGVY- 108 (142)
T ss_pred -------------eecCcceE--EEecCCceeeeHHHHHHHHHH-HHcccHHHHhhcccccccccccccchhhHHhCCc-
Confidence 01122222 224444455566777777777 888999999998764333222 112223310
Q ss_pred cccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccC
Q 009282 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~ 293 (538)
.+..+|...+.+.+.+++..+.+.|+.|.++
T Consensus 109 -------L~G~cEs~~~~rd~lLak~~g~~yhVchvst 139 (142)
T PF12890_consen 109 -------LKGNCESVQCARDVLLAKATGCHYHVCHVST 139 (142)
T ss_pred -------CCCcchHHHHHHHHHhhhccCCcEEEEEEec
Confidence 2336788999999999999999999999875
|
|
| >cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0065 Score=60.42 Aligned_cols=148 Identities=14% Similarity=0.069 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHhcC--CeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 212 INDELLIEGFKRCKSLG--ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g--~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
.+...+..+++.|++.| +++.+|+.+.... + ....+.+.+++.+ +.. .+.
T Consensus 176 ~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~----------~-------------~~~~~~v~~al~l----g~~-RIG 227 (345)
T cd01321 176 RPLLDFLPQLLWFPKQCAEIPFFFHAGETNGD----------G-------------TETDENLVDALLL----NTK-RIG 227 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEeecCCCcCC----------C-------------CCChhHHHHHHHh----CCC-cCc
Confidence 45788899999999999 9999999543210 0 0000112222211 110 234
Q ss_pred eccCH-HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCC
Q 009282 290 HVMSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (538)
Q Consensus 290 h~~~~-~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~ 368 (538)
|.... .+.+.++.++++++++-.||++....-.-. . -..-+++.++++|++++++||.
T Consensus 228 HG~~~~~dp~ll~~l~~~~I~lEvCPtSN~~~~~v~-----------------~----~~~HPl~~ll~~Gv~vtinTDD 286 (345)
T cd01321 228 HGFALPKHPLLMDLVKKKNIAIEVCPISNQVLGLVS-----------------D----LRNHPAAALLARGVPVVISSDD 286 (345)
T ss_pred cccccCcCHHHHHHHHHcCCeEEECcchhhhhcccc-----------------c----hhhChHHHHHHCCCeEEEeCCC
Confidence 44332 123889999999999999998743211000 0 0123488999999999999997
Q ss_pred CCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCC---CCHHHHHHHHhHhHHHHcCC
Q 009282 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQ---ISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~---ls~~eal~~aT~~~A~~lg~ 429 (538)
+... +.. .+...+..+....+ ++.++..+ .+.|+.++..+
T Consensus 287 p~~f----------------~t~----~l~~Ey~~~~~~~g~~~l~~~~l~~-l~~nsi~~sF~ 329 (345)
T cd01321 287 PGFW----------------GAK----GLSHDFYQAFMGLAPADAGLRGLKQ-LAENSIRYSAL 329 (345)
T ss_pred cchh----------------CCC----CchHHHHHHHHHhccCCCCHHHHHH-HHHHHHHHHCC
Confidence 6431 110 12222223333445 99988666 46777766655
|
|
| >PTZ00124 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0034 Score=62.59 Aligned_cols=140 Identities=11% Similarity=0.118 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCh---hhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 215 ELLIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
..+..+++.|++.|+++.+|+.+. .......+.+...|.. .+.|+
T Consensus 206 ~~f~~~f~~Ar~~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~--------------------------------RIGHG 253 (362)
T PTZ00124 206 KPFKDIFDYVREAGVNLTVHAGEDVTLPNLNTLYSAIQVLKVK--------------------------------RIGHG 253 (362)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCCCcchhHHHHHHHhCCC--------------------------------ccccc
Confidence 568899999999999999999542 1111111111111111 24454
Q ss_pred cCH-HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCC
Q 009282 292 MSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (538)
Q Consensus 292 ~~~-~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~ 370 (538)
... .+.+.++.++++++++..||.+... .+.. +. -..-+++.++++|++++++||.+.
T Consensus 254 ~~~~~d~~l~~~l~~~~I~lEvCPtSN~~-------------~~~v----~~----~~~HPi~~l~~~Gv~v~InTDDp~ 312 (362)
T PTZ00124 254 IRVAESQELIDMVKEKDILLEVCPISNVL-------------LNNA----KS----MDTHPIRKLYDAGVKVSVNSDDPG 312 (362)
T ss_pred cccCCCHHHHHHHHHcCCeEEECCcchhh-------------hhcC----Cc----hhhHHHHHHHHCCCcEEEeCCCcc
Confidence 433 1237889999999999999997322 1100 00 112458899999999999999764
Q ss_pred CChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
... ..+...+..+....|++.++..++ +.|+.++..+
T Consensus 313 ~~~---------------------t~l~~Ey~~~~~~~gls~~~l~~l-~~nai~asF~ 349 (362)
T PTZ00124 313 MFL---------------------TNINDDYEELYTHLNFTLADFMKM-NEWALEKSFL 349 (362)
T ss_pred ccC---------------------CChhHHHHHHHHHcCCCHHHHHHH-HHHHHHHhcC
Confidence 321 123344444556677999998886 6666655544
|
|
| >cd00443 ADA_AMPD Adenosine/AMP deaminase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.02 Score=56.08 Aligned_cols=141 Identities=13% Similarity=0.067 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHhcC-CeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 213 NDELLIEGFKRCKSLG-ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 213 ~~~~l~~~~~~A~~~g-~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
+...+...++.|++.| +++.+|+.+.... ..+.+++... .-.+.|+
T Consensus 151 ~~~~f~~~~~~ar~~g~l~~t~HaGE~~~~----------------------------~~v~~~~~~~-----~~RIgHg 197 (305)
T cd00443 151 PLRDFYSYYEYARRLGLLGLTLHCGETGNR----------------------------EELLQALLLL-----PDRIGHG 197 (305)
T ss_pred CHHHHHHHHHHHHHcCCcceEEeecCCCCh----------------------------HHHHHHHHhc-----cceeece
Confidence 5788899999999999 9999999543211 1122222211 1134444
Q ss_pred cCHH-HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCC
Q 009282 292 MSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (538)
Q Consensus 292 ~~~~-~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~ 370 (538)
.... ..+.++.++++++++..||.+........ .+. .-++..+++.|++++++||.+.
T Consensus 198 ~~~~~~p~~~~~l~~~~i~ie~CP~SN~~~~~~~-----------~~~----------~hP~~~~~~~G~~v~i~TDd~~ 256 (305)
T cd00443 198 IFLLKHPELIYLVKLRNIPIEVCPTSNVVLGTVQ-----------SYE----------KHPFMRFFKAGLPVSLSTDDPG 256 (305)
T ss_pred EecCCCHHHHHHHHHcCCEEEECcchhhhhcCCC-----------Chh----------hChHHHHHHCCCeEEEeCCCCc
Confidence 4321 12778889999999999998732211111 011 1238899999999999999764
Q ss_pred CChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
.... .+...+..+....+++.++..++ ..|+-+.-.+
T Consensus 257 ~~~~---------------------~l~~E~~~~~~~~~l~~~~l~~l-~~nsi~~sf~ 293 (305)
T cd00443 257 IFGT---------------------SLSEEYSLAAKTFGLTFEDLCEL-NRNSVLSSFA 293 (305)
T ss_pred ccCC---------------------ChHHHHHHHHHHcCcCHHHHHHH-HHHHHHHhcC
Confidence 3211 22333333444556999887765 4666555544
|
Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway. |
| >PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.01 Score=57.12 Aligned_cols=186 Identities=15% Similarity=0.107 Sum_probs=99.2
Q ss_pred ChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccc
Q 009282 181 DEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHA 260 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (538)
.++..+++++.....|..++|++....+....+......+++.|.++|+++.+|+..........
T Consensus 83 ~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~~~--------------- 147 (273)
T PF04909_consen 83 PEDAVEELERALQELGFRGVKLHPDLGGFDPDDPRLDDPIFEAAEELGLPVLIHTGMTGFPDAPS--------------- 147 (273)
T ss_dssp HHHHHHHHHHHHHTTTESEEEEESSETTCCTTSGHCHHHHHHHHHHHT-EEEEEESHTHHHHHHH---------------
T ss_pred chhHHHHHHHhccccceeeeEecCCCCccccccHHHHHHHHHHHHhhccceeeeccccchhhhhH---------------
Confidence 45677778777778899999988766554444444445999999999999999965111000000
Q ss_pred ccCCchHHHHHHHHHHHHHHHc-CCCEEEEeccCH--HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccce
Q 009282 261 LSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSM--DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (538)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~h~~~~--~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.......+..++..+ +.++++.|+... .-.+.++.+++. -++.......... ..
T Consensus 148 -------~~~~~~~~~~~~~~~P~l~ii~~H~G~~~~~~~~~~~l~~~~-~nvy~d~s~~~~~---------------~~ 204 (273)
T PF04909_consen 148 -------DPADPEELEELLERFPDLRIILAHLGGPFPWWEEALRLLDRF-PNVYVDLSGIPPF---------------WY 204 (273)
T ss_dssp -------HHHHHHHHTTHHHHSTTSEEEESGGGTTHHHHHHHHHHHHHH-TTEEEECHSHHSS---------------EE
T ss_pred -------HHHHHHHHHHHHHHhcCCeEEEecCcccchhHHHHHHHHHhC-Ccccccccccccc---------------cc
Confidence 012222233333343 789999999887 332444443433 3455443320000 00
Q ss_pred eecCCCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHH
Q 009282 338 VMSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (538)
Q Consensus 338 ~~~p~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~ea 415 (538)
. .........+..+++. | -++.+|||.+...... ...... .......+|.++.
T Consensus 205 ~----~~~~~~~~~l~~~~~~~g~drilfGSD~P~~~~~~--------------------~~~~~~-~~~~~~~l~~~~~ 259 (273)
T PF04909_consen 205 F----WPPSFDRPFLRRAVDEFGPDRILFGSDYPHPDGAS--------------------PYEYIW-EAYFLDDLSEEER 259 (273)
T ss_dssp E----ETTHHCHHHHHHHHHHHTGGGEEEE--TTSSTHHH--------------------HHHHHH-HHHHHHHSSHHHH
T ss_pred c----CcccccHHHHHHHHHHhCCceEEecCCCCCCCccc--------------------cHHHHH-HhhhccCCCHHHH
Confidence 0 0000112334444443 3 3899999965332211 111111 1111111789999
Q ss_pred HHHHhHhHHHHcCC
Q 009282 416 VRLTSTECARIFNV 429 (538)
Q Consensus 416 l~~aT~~~A~~lg~ 429 (538)
=+....|+++++|+
T Consensus 260 ~~i~~~NA~rl~~l 273 (273)
T PF04909_consen 260 EKILYDNARRLYGL 273 (273)
T ss_dssp HHHHTHHHHHHHTC
T ss_pred HHHHhHhHHHHcCc
Confidence 99999999999985
|
The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. |
| >PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0072 Score=60.18 Aligned_cols=173 Identities=12% Similarity=0.043 Sum_probs=92.7
Q ss_pred ChhhHHHHHHHHHHcCC-cEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009282 181 DEVVSDEMEVMVKEKGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 181 ~~~~~~~~~~~~~~~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (538)
..+...++.++...... ..+.+-+.+. ........+..+++.|++.|+++..|+.+........+.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~vvG~dl~g~-E~~~~~~~~~~~~~~a~~~gl~~t~HaGE~~~~~~~~~ai~~--------- 215 (331)
T PF00962_consen 146 PDEWAEEIVELASKYPDKGVVGFDLAGD-EDGGPPLKFAPAFRKAREAGLKLTVHAGETGGPEHIRDAILL--------- 215 (331)
T ss_dssp THHHHHHHHHHHHHTTTTTEEEEEEESS-TTSTTGGGHHHHHHHHHHTT-EEEEEESSSSTHHHHHHHHHT---------
T ss_pred hHHHHHHHHHHHhhcccceEEEEEecCC-cccCchHHHHHHHhhhcccceeecceecccCCcccccchhhh---------
Confidence 45555555555534333 3444433332 122344458899999999999999999654333222222211
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHH-HHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccccee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~-~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
++.. .+.|+.... ..+.++.++++++++-.||.+....-.-. .+.
T Consensus 216 ----------------------l~~~-RIgHG~~~~~~p~l~~~~~~~~I~iEvcptSN~~~~~~~-----------~~~ 261 (331)
T PF00962_consen 216 ----------------------LGAD-RIGHGVRLIKDPELLELLAERQIPIEVCPTSNVQLGAVP-----------SYE 261 (331)
T ss_dssp ----------------------ST-S-EEEE-GGGGGSHHHHHHHHHTT-EEEE-HHHHHHTTSSS-----------TGG
T ss_pred ----------------------ccce-eecchhhhhhhhHHHHHHHHhCCCeeeCCCcCcccceee-----------ecc
Confidence 1211 467765432 23678889999999999998743321100 111
Q ss_pred ecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHH
Q 009282 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418 (538)
Q Consensus 339 ~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~ 418 (538)
.-+++.++++|++++++||.+... ...+...+..+....++|.++..+
T Consensus 262 ----------~hP~~~~~~~gv~v~i~TDd~~~~---------------------~~~l~~ey~~~~~~~~l~~~~l~~- 309 (331)
T PF00962_consen 262 ----------EHPLRKLLDAGVPVSINTDDPGVF---------------------GTTLSDEYYLAAEAFGLSLADLKQ- 309 (331)
T ss_dssp ----------G-CHHHHHHTT-EEEE--BSHHHH---------------------T-SHHHHHHHHHHHHT--HHHHHH-
T ss_pred ----------hhHHHHHHHcCCceeccCCCcccc---------------------CCCcHHHHHHHHHHcCCCHHHHHH-
Confidence 123899999999999999965321 112444443444445799988665
Q ss_pred HhHhHHHHcCC
Q 009282 419 TSTECARIFNV 429 (538)
Q Consensus 419 aT~~~A~~lg~ 429 (538)
...|+.++-.+
T Consensus 310 l~~nsi~~sf~ 320 (331)
T PF00962_consen 310 LARNSIEASFL 320 (331)
T ss_dssp HHHHHHHCSSS
T ss_pred HHHHHHHHHcC
Confidence 46777766655
|
5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A .... |
| >cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.12 Score=49.64 Aligned_cols=123 Identities=18% Similarity=0.129 Sum_probs=67.3
Q ss_pred cccccccccccccCCCC--------ChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcccceeeeeeee
Q 009282 106 GGIDPHTHLAMEFMGSE--------TIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMA 176 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~--------~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (538)
|.||+|.|++..-.... ..-........+-..||+..+-....... .....++... ...+ +..+..
T Consensus 1 ~~iD~H~H~~~~~~~~~~~~~~~~~~~~~~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~-~~~r-~~g~~~--- 75 (263)
T cd01311 1 GAVDAHMHVFDPGYPFPPAPEKFTPYDPGIDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALA-SNGK-ARGGAT--- 75 (263)
T ss_pred CCEEeeeeeeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHh-hCCC-eEEEEE---
Confidence 67999999986511000 01112222444556898876643211111 2222333332 2111 222211
Q ss_pred eecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 177 ITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
..... ...++++++. ..|..++++.....+.. +.+.+...++.+.++|+++.+|+..
T Consensus 76 ~~p~~-~~~~~l~~~~-~~g~rGvRl~~~~~~~~--~~~~~~~~~~~~~~~gl~v~~~~~~ 132 (263)
T cd01311 76 VDPRT-TTDAELKEMH-DAGVRGVRFNFLFGGVD--NKDELDEIAKRAAELGWHVQVYFDA 132 (263)
T ss_pred ECCCC-CCHHHHHHHH-HCCCeEEEEecccCCCC--CHHHHHHHHHHHHHcCCEEEEEeCH
Confidence 11111 1245666664 68999999765433332 7788899999999999999999853
|
This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature. |
| >COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.037 Score=54.26 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=88.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
.....+.+..+++.++..|+.+.+|+.+........+.+...+. . .+.
T Consensus 180 ~~~p~~~f~~~f~~~r~~gl~lt~HaGE~~~~~~i~~al~~~~~--------------------------~------rI~ 227 (345)
T COG1816 180 SGYPPELFVSLFKLARDNGLKLTIHAGEAGGPESIRDALDLLGA--------------------------E------RIG 227 (345)
T ss_pred ccCCHHHHHHHHHHHHHcCceEEEeccccCCcHHHHHHHHHhch--------------------------h------hhc
Confidence 34578999999999999999999999643322222222111111 1 133
Q ss_pred eccC-HHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccc--cceeecCCCCCcccHHHHHHHHhcCCceEEeC
Q 009282 290 HVMS-MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA--AKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (538)
Q Consensus 290 h~~~-~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgt 366 (538)
|..- ..+.+.+.++.+.++++..||.+. ..++ ..+.. -++++++++|+++++.|
T Consensus 228 HGi~~~~d~~L~~~l~~~qI~levCP~SN-------------i~~~~v~~~~~----------hPf~~~~d~Gv~VsLnT 284 (345)
T COG1816 228 HGIRAIEDPELLYRLAERQIPLEVCPLSN-------------IQLGVVPSLAK----------HPFKKLFDAGVKVSLNT 284 (345)
T ss_pred cccccccCHHHHHHHHHhCCeeEECCcch-------------hhcccccchhh----------CcHHHHHHcCCceEEcC
Confidence 3322 122377888999999999999873 1111 11111 23899999999999999
Q ss_pred CCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
|.+.... + .+......+....+++..|+-+. +.|+=+.-+++
T Consensus 285 Ddp~~f~----------------~-----~l~~Ey~~aa~~~~l~~~dl~~~-arnav~~af~~ 326 (345)
T COG1816 285 DDPLYFG----------------T-----PLIEEYLVAAQIYGLSREDLCEL-ARNAVEAAFIS 326 (345)
T ss_pred CChhhcC----------------C-----chHHHHHHHHHHhCCCHHHHHHH-HHHHHHHccCC
Confidence 9775422 1 11222223334455988887774 66766666653
|
|
| >PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0026 Score=42.88 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=20.7
Q ss_pred eEEEEEEECCEEEEECCeeeccCCCceEeec
Q 009282 476 GKVEVTIAGGRVVWENDELNVVPGSGKYIEM 506 (538)
Q Consensus 476 ~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~ 506 (538)
.-|.+|||||++++++|+++... .|++|++
T Consensus 18 ~GI~~V~VNG~~vv~~g~~t~~~-~G~~lrr 47 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVEDGEVTGAR-PGRVLRR 47 (48)
T ss_dssp BSEEEEEETTEEEECTTEESSS-----B---
T ss_pred CCEEEEEECCEEEEECCeECCCC-CCeEecC
Confidence 35999999999999999988765 8999885
|
5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A. |
| >COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.32 Score=47.27 Aligned_cols=176 Identities=19% Similarity=0.188 Sum_probs=100.4
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
+....++++...+.|..++++.....+. ..+.+.+..+++.|.++|+++.+|........ +... +|
T Consensus 112 ~~a~~E~er~v~~~gf~g~~l~p~~~~~-~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~---------~~~~--~~-- 177 (293)
T COG2159 112 EAAAEELERRVRELGFVGVKLHPVAQGF-YPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA---------GLEK--GH-- 177 (293)
T ss_pred HHHHHHHHHHHHhcCceEEEecccccCC-CCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc---------cccc--CC--
Confidence 4567788888877899999885443332 23566689999999999999999985432110 0000 00
Q ss_pred cCCchHHHHHHHHHHHHHHHc-CCCEEEEecc--CHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccccee
Q 009282 262 SRPPLLEGEATTRAIRLAEFV-NTPLYVVHVM--SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~-~~~~~~~h~~--~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
..| ..+-.++..+ ..++++.|+. ..-..+.+. ++...-++...... ...+
T Consensus 178 ~~p--------~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~-~a~~~~nvy~d~s~------------------~~~~ 230 (293)
T COG2159 178 SDP--------LYLDDVARKFPELKIVLGHMGEDYPWELEAIE-LAYAHPNVYLDTSG------------------VRPK 230 (293)
T ss_pred CCc--------hHHHHHHHHCCCCcEEEEecCCCCchhHHHHH-HHHhCCCceeeeec------------------cccc
Confidence 011 1122334444 7899999997 333223333 33333344333221 0011
Q ss_pred ecCCCCCcccHHHHHHHHh-cCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHH
Q 009282 339 MSPPIRASGHNKALQAALA-TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (538)
Q Consensus 339 ~~p~~r~~~~~~~l~~~l~-~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~ 417 (538)
+.++ ..+..+.+ -.-++.+|||.+...+. ..+ ..+...+++.+..-+
T Consensus 231 ~~~~-------~~~~~~~~~~~dkilFGSD~P~~~~~------------------------~~l-~~~~~l~l~~e~k~k 278 (293)
T COG2159 231 YFAP-------PLLEFLKELGPDKILFGSDYPAIHPE------------------------VWL-AELDELGLSEEVKEK 278 (293)
T ss_pred cCCh-------HHHHHHHhcccCeEEecCCCCCcCHH------------------------HHH-HHHHhcCCCHHHHHH
Confidence 1111 11333444 24489999996544322 111 223445588888889
Q ss_pred HHhHhHHHHcCCC
Q 009282 418 LTSTECARIFNVY 430 (538)
Q Consensus 418 ~aT~~~A~~lg~~ 430 (538)
..-.|+++++|++
T Consensus 279 iL~~NA~rll~l~ 291 (293)
T COG2159 279 ILGENAARLLGLD 291 (293)
T ss_pred HHHHhHHHHhCcC
Confidence 9999999999984
|
|
| >TIGR01431 adm_rel adenosine deaminase-related growth factor | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.51 Score=49.07 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 298 EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 298 ~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
+.++.++++++.+-.||.+......-.++. .-++..++++|++++++||.+..
T Consensus 363 ~l~~~vke~~I~lEvCP~SN~~l~~v~~~~---------------------~HPl~~lla~Gvpv~InSDDP~~ 415 (479)
T TIGR01431 363 LVLQMLKERNIAVEVNPISNQVLQLVADLR---------------------NHPCAYLFADNYPMVISSDDPAF 415 (479)
T ss_pred HHHHHHHHhCCeEEECccchhhhcccCCcc---------------------cChHHHHHHCCCcEEEeCCCccc
Confidence 788899999999999999744322111111 13378999999999999997643
|
Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates. |
| >PF00449 Urease_alpha: Urease alpha-subunit, N-terminal domain; InterPro: IPR011612 Urease (urea amidohydrolase, 3 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0043 Score=49.00 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=31.0
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN 86 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~ 86 (538)
..|++|+|+.|+|..++..++|-|+||||+.||..
T Consensus 65 ~lD~VItNa~IiD~~GI~KADIGIkdG~I~gIGkA 99 (121)
T PF00449_consen 65 ALDLVITNALIIDYTGIVKADIGIKDGRIVGIGKA 99 (121)
T ss_dssp C-SEEEEEEEEEETTEEEEEEEEEETTEEEEEE-E
T ss_pred cccEEEeCcEEEecCCcEEeeEEeeCCEEEEEecc
Confidence 56899999999999888999999999999999974
|
5.1.5 from EC) catalyses the hydrolysis of urea to form ammonia and carbamate. The subunit composition of urease from different sources varies [], but each holoenzyme consists of four structural domains []: three structural domains and a nickel-binding catalytic domain common to amidohydrolases []. Urease is unique among nickel metalloenzymes in that it catalyses a hydrolysis rather than a redox reaction. In Helicobacter pylori, the gamma and beta domains are fused and called the alpha subunit (IPR008223 from INTERPRO). The catalytic subunit (called beta or B) has the same organisation as the Klebsiella alpha subunit. Jack bean (Canavalia ensiformis) urease has a fused gamma-beta-alpha organisation (IPR008221 from INTERPRO). The N-terminal domain is a composite domain and plays a major trimer stabilising role by contacting the catalytic domain of the symmetry related alpha-subunit []. ; GO: 0009039 urease activity, 0016151 nickel ion binding, 0019627 urea metabolic process; PDB: 3LA4_A 2UBP_C 3UBP_C 1UBP_C 1S3T_C 1IE7_C 4UBP_C 1E9Y_B 1E9Z_B 3QGA_O .... |
| >KOG1097 consensus Adenine deaminase/adenosine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.26 Score=48.70 Aligned_cols=147 Identities=14% Similarity=0.127 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc
Q 009282 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (538)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~ 292 (538)
+.-.+..++..+.+.|+.+.+|+.+...-... ++.++++ ++. -.+.|..
T Consensus 225 p~~~f~~vl~~~~~~gi~~t~HaGE~~~~~~~---------------------------v~~~LD~---l~~-~RIGHG~ 273 (399)
T KOG1097|consen 225 PLSLFLEVLAKAPAKGIHLTFHAGETNGGASV---------------------------VKNALDL---LGT-ERIGHGY 273 (399)
T ss_pred ChhhhHHHHHhhhhcCCcEEEEccccCCChHH---------------------------HHHHHHh---hCC-ccccCce
Confidence 45556666666666899999999433111111 2222220 111 0244443
Q ss_pred CH-HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 293 SM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 293 ~~-~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
.. .+..++.+++..++.+..||.+....-.- ..+. .-.+..++++|+++.|+||.+.+
T Consensus 274 ~l~~dp~L~~~~k~~nI~lEiCP~SN~vl~~v-----------~d~r----------nhp~~~~~~~~vP~vI~sDDP~~ 332 (399)
T KOG1097|consen 274 FLTKDPELINLLKSRNIALEICPISNQVLGLV-----------SDLR----------NHPVARLLAAGVPVVINSDDPGF 332 (399)
T ss_pred eccCCHHHHHHHHhcCceEEEccchhhheecc-----------cccc----------ccHHHHHHhCCCCEEEeCCCccc
Confidence 22 12267888999999999999874332111 1111 13378899999999999997633
Q ss_pred ChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 372 ~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
++..++...+...+.. ...+++..+..+ +..|+++.--+.
T Consensus 333 ----------------f~~~~Lt~dfy~A~~~--~~~~~~~~~l~~-la~nai~~S~l~ 372 (399)
T KOG1097|consen 333 ----------------FGAAPLTLDFYLAFLG--IAPNLDLRELKR-LALNAIKYSFLS 372 (399)
T ss_pred ----------------ccCccccHHHHHHHHh--ccccCCHHHHHH-HHHHHhhhccCC
Confidence 2222222222222211 111477777655 567777766653
|
|
| >PRK00912 ribonuclease P protein component 3; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=2.6 Score=39.63 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=44.1
Q ss_pred HHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 351 ~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
.+..+.+.|+++.++||...... +. ...... .+....|++.++++.+.+.+|.+++..-
T Consensus 159 ~~~~~~~~g~piiisSdAh~~~~----------------l~----~~~~~~-~l~~~~Gl~~~~~~~~~~~~~~~i~~~~ 217 (237)
T PRK00912 159 NLALARKYDFPLVLTSGAMSCYD----------------LR----SPREMI-ALAELFGMEEDEALKALSYYPESIIKKN 217 (237)
T ss_pred HHHHHHhcCCCEEEeCCCCcccc----------------cC----CHHHHH-HHHHHcCCCHHHHHHHHHHhHHHHHHhh
Confidence 34556667999999999542210 10 122222 3445667999999999999999998762
Q ss_pred -CCCcccccCC
Q 009282 431 -PRKGAILVGS 440 (538)
Q Consensus 431 -~~~GsI~~Gk 440 (538)
.+.+.|..|.
T Consensus 218 ~~~~~~~~~~~ 228 (237)
T PRK00912 218 RNRKNYVIEGV 228 (237)
T ss_pred ccCCCcccccE
Confidence 2334454443
|
|
| >COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.74 E-value=3.6 Score=37.04 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=29.3
Q ss_pred cccccccccccc-CCCCChhhHHHHHHHHHhCCcEEEeccc
Q 009282 107 GIDPHTHLAMEF-MGSETIDDFFSGQAAALAGGTTMHIDFV 146 (538)
Q Consensus 107 lID~H~H~~~~~-~~~~~~~~~~~~~~~~l~~GvTt~~d~~ 146 (538)
+||+|+|+.-.. .|..+.+.-...++.+.+.|||+++.+.
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTs 41 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATS 41 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecc
Confidence 589999987652 2344555555667888999999999664
|
|
| >PRK08609 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=33 Score=36.87 Aligned_cols=38 Identities=18% Similarity=0.043 Sum_probs=27.3
Q ss_pred eecccc-------ccccccccccCCCCChhhHHHHHHHHHhCCcEEEec
Q 009282 103 VMPGGI-------DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID 144 (538)
Q Consensus 103 v~PGlI-------D~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d 144 (538)
-+|=|| |.|+|...+ + ....+....+.+.+.|++.+.-
T Consensus 324 ~lp~lv~~~d~~~DlH~HT~~s--D--g~~sleemv~~A~~~Gl~~i~i 368 (570)
T PRK08609 324 DLSNLITLSDIQGDLHMHTTWS--D--GAFSIEEMVEACIAKGYEYMAI 368 (570)
T ss_pred hchhhhhhHhhcCCccccCCCC--C--CCCCHHHHHHHHHHCCCCEEEE
Confidence 456665 999999765 2 2334555688899999998873
|
|
| >COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.56 E-value=19 Score=34.19 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 214 DELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 214 ~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
.+.+++.++..+++|+++..+....
T Consensus 123 a~~~r~~~~rL~~~gl~fdl~~~~~ 147 (279)
T COG3618 123 APAWRANVERLAKLGLHFDLQVDPH 147 (279)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeChh
Confidence 4688888888899999888887543
|
|
| >PF07969 Amidohydro_3: Amidohydrolase family; InterPro: IPR013108 Amidohydrolases are a diverse superfamily of enzymes which catalyse the hydrolysis of amide or amine bonds in a large number of different substrates including urea, cytosine, AMP, formylmethanofuran, etc [, ] | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.16 Score=52.13 Aligned_cols=15 Identities=67% Similarity=0.897 Sum_probs=12.6
Q ss_pred eeecccccccccccc
Q 009282 102 FVMPGGIDPHTHLAM 116 (538)
Q Consensus 102 ~v~PGlID~H~H~~~ 116 (538)
+|+|||||+|+|+..
T Consensus 1 ~v~PGfiD~H~H~~~ 15 (404)
T PF07969_consen 1 TVMPGFIDSHTHLDS 15 (404)
T ss_dssp EEEE-EEEEEEEHTT
T ss_pred CCccChhHHhhChHH
Confidence 589999999999875
|
Also included in this superfamily are the phopshotriesterase enzymes, which hydrolyse P-O bonds. Members participate in a large number of processes including nucleotide metabolism, detoxification and neuronal development. They use a variety of divalent metal cofactors for catalysis: for example adenosine deaminase binds a single zinc ion, phopsphotriesterase binds two, while urease binds nickel. It has been postulated that since some of these proteins, such as those some of those involved in neuronal devlopment, appear to have lost their metal-binding centres, their function may simply be to bind, but not hydrolyse, their target molecules. This entry represents a subset of amidohydrolase domains that participate in different functions including cytosine degradation, atrazine degradation and other metabolic processes. The structure of the domain from Escherichia coli has been studied, and like other amidohydrolases it forms a classical alpha-beta TIM-barrel fold []. The active site is located in the mouth of the enzyme barrel and contains a bound iron ion that coordinates a hydroxyl nucleophile. Substrate binding involves a significant conformational change that sequesters the reaction complex from solvent.; PDB: 4F0R_A 4F0S_A 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A .... |
| >COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.10 E-value=34 Score=32.19 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 350 ~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
..+.++++.|-.+.+-||+.--... |..+-+ --..+.-.+.+...+.++.+.+.+..-.||.+++|+
T Consensus 216 ~~v~~a~~~g~~FmmETDyIDDp~R------------pgavL~-PktVPrr~~~i~~~g~~~ee~vy~i~~E~pe~VYg~ 282 (285)
T COG1831 216 KNVEDAAELGPRFMMETDYIDDPRR------------PGAVLG-PKTVPRRTREILEKGDLTEEDVYRIHVENPERVYGI 282 (285)
T ss_pred HHHHHHHhcCCceEeecccccCccc------------CCCcCC-ccchhHHHHHHHHhcCCcHHHHHHHHHhCHHHHhCc
Confidence 3588999999999999996522111 111111 112344444566788899999999999999999998
Q ss_pred C
Q 009282 430 Y 430 (538)
Q Consensus 430 ~ 430 (538)
+
T Consensus 283 ~ 283 (285)
T COG1831 283 E 283 (285)
T ss_pred c
Confidence 4
|
|
| >PRK06361 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.57 E-value=15 Score=33.68 Aligned_cols=58 Identities=9% Similarity=0.063 Sum_probs=39.6
Q ss_pred HHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 351 ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 351 ~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
.+..+.+.|++++++||... +.. -..+.. ...+....|++.++++.+.+.||+.+++.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~--~~d------------------~~~~~~-~~~i~~~~gl~~~~v~~~~~~~~~~~~~~ 210 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHA--PSD------------------LITYEF-ARKVALGAGLTEKELEEALENNPKLLLKR 210 (212)
T ss_pred HHHHHHHhCCcEEEECCCCC--HHH------------------HHHHHH-HHHHHcCCCCCHHHHHHHHHHhHHHHHHh
Confidence 34556667999999999651 110 001122 22344667799999999999999999875
|
|
| >PRK08392 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.57 E-value=36 Score=31.28 Aligned_cols=179 Identities=15% Similarity=0.031 Sum_probs=85.8
Q ss_pred cccccccccccCCCCChhhHHHHHHHHHhCCcEEEec--ccCCCC-CCHHHHHHHHHHHhcc--cceeeeeeeeeecCCh
Q 009282 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID--FVIPIN-GSLTAGFEAYEKKAKN--SCMDYGFHMAITKWDE 182 (538)
Q Consensus 108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d--~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 182 (538)
||.|+|...+ .+..+ +......+.+.|++.+.- ...... ......++...+.... ..+-.|.-......
T Consensus 1 ~D~H~HT~~s-d~~~~---~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~-- 74 (215)
T PRK08392 1 MDLHTHTVYS-DGIGS---VRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITPN-- 74 (215)
T ss_pred CccccCCCCc-CCcCC---HHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecCC--
Confidence 7999998776 23333 445578899999998762 211111 1222333333322222 22223332222221
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (538)
.......+.+ ..+.+-..+........-.+.+..+.+.+......+.+|...... . ..
T Consensus 75 -~~~~~~~~~~--~~D~vI~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~----------~--~~------- 132 (215)
T PRK08392 75 -GVDITDDFAK--KLDYVIASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFP----------Y--IG------- 132 (215)
T ss_pred -cchhHHHHHh--hCCEEEEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCcccc----------C--CC-------
Confidence 1223333332 344443222211000001244455566666667788888532100 0 00
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccc
Q 009282 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (538)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~ 317 (538)
.+ ..+.+.++++.+.+.|..+-+.-.......+.++.+++.|++++...-+|
T Consensus 133 ~~---~~~~~~~i~~~~~~~g~~lEiNt~~~~p~~~~l~~~~~~G~~~~igSDAH 184 (215)
T PRK08392 133 YP---SEEELKEILDLAEAYGKAFEISSRYRVPDLEFIRECIKRGIKLTFASDAH 184 (215)
T ss_pred Cc---hHHHHHHHHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHcCCEEEEeCCCC
Confidence 00 12456777777777776665432111122367888899998887665543
|
|
| >KOG3020 consensus TatD-related DNase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.71 E-value=48 Score=32.02 Aligned_cols=179 Identities=16% Similarity=0.136 Sum_probs=95.4
Q ss_pred EecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHh-cccceeeeee
Q 009282 96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA-KNSCMDYGFH 174 (538)
Q Consensus 96 ID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 174 (538)
.|..-..--|.|+|+|.|+... . ...+.......+...||.-++.+++... .....++ ..+.. +..+..+|.+
T Consensus 7 ~d~~~~~~~~~~~~~~~~~~~~--~--~~~d~s~v~~~a~~~~v~~~~v~gt~~~-d~~~~~~-l~~~y~~~v~~t~G~H 80 (296)
T KOG3020|consen 7 LDDGRNFTNPMLEDIYCHIQAH--P--SDSDASQVLERAVQAGVSKLIVTGTSLK-DSKEALE-LAEKYPGSVYPTFGVH 80 (296)
T ss_pred hhhhhhhcchhhchhhhccccC--C--CCccchHHHHHHHhccceEEEEeCCCcc-hHHHHHH-HHhhCCCceeeccCcC
Confidence 3444556667899999998776 2 1222223367788899999988766322 2333333 33333 2333334433
Q ss_pred eeeec-CC-----hhhHHHHHHHHHH---cCCcEEEE-EeeeCCCccC----CHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009282 175 MAITK-WD-----EVVSDEMEVMVKE---KGINSFKF-FMAYKGSFMI----NDELLIEGFKRCKSLGALAMVHAENGDA 240 (538)
Q Consensus 175 ~~~~~-~~-----~~~~~~~~~~~~~---~g~~~ik~-~~~~~~~~~~----~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (538)
..... +. +...+.+..+... ...-.++. .+++...... ....+++.++.|.+..+|+.+|+....
T Consensus 81 P~~~~~~~~~~~~~~~~~~L~~~~~~~~~~k~vAiGEcGLD~~r~~~~~~~~Qk~vFekQl~LA~~~~~Pl~iH~r~a~- 159 (296)
T KOG3020|consen 81 PHFSQEFSDQSRKEKFLDTLLSIIENGFLPKVVAIGECGLDYDRLQFSDKEEQKTVFEKQLDLAKRLKLPLFIHCRSAH- 159 (296)
T ss_pred CCcccchhhccchhhHHHHHHHHHhhcccCCeEEeeccccccchhccCChHHHHHHHHHHHHHHHHccCCeeeechhhh-
Confidence 22111 11 1345666666633 11122221 1122111112 245567888999999999999997642
Q ss_pred HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEE
Q 009282 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311 (538)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~ 311 (538)
.+.++.+.+.+-. -.+-.+.|+.+... +++..+.+.++.+.
T Consensus 160 -~d~~eIl~~~~~~----------------------------~~~~vvvHsFtGs~-e~~~~~lk~~~yig 200 (296)
T KOG3020|consen 160 -EDLLEILKRFLPE----------------------------CHKKVVVHSFTGSA-EEAQKLLKLGLYIG 200 (296)
T ss_pred -HHHHHHHHHhccc----------------------------cCCceEEEeccCCH-HHHHHHHHccEEec
Confidence 2333333222211 01025788888776 78888888884443
|
|
| >cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring | Back alignment and domain information |
|---|
Probab=82.42 E-value=7.8 Score=40.36 Aligned_cols=91 Identities=9% Similarity=0.001 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhh
Q 009282 298 EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377 (538)
Q Consensus 298 ~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~ 377 (538)
.....++..++.+..||.+....+ ..+.- -++..+++.|++++|+||.+.....
T Consensus 363 ~L~~l~~~~qI~levCPlSN~~l~-------------~~~~~----------HP~~~~l~~Gl~VsInTDDPl~f~~--- 416 (496)
T cd01319 363 VLQYLYYLTQIGIAMSPLSNNSLF-------------LSYEK----------NPFPEFFKRGLNVSLSTDDPLQFHF--- 416 (496)
T ss_pred HHHHHHHHcCCeEEEecCccHhhh-------------cCccc----------ChHHHHHHCCCeEEEeCCCchhhCC---
Confidence 344456778999999998743210 11211 2388999999999999997633110
Q ss_pred cCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 378 FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 378 ~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
. ...+...+..+....++|..+..+ +..|+.++-+.+
T Consensus 417 -------------t--~~~L~eEY~~a~~~~~Ls~~Dl~e-LarNSV~~Sf~~ 453 (496)
T cd01319 417 -------------T--KEPLMEEYSIAAQVWKLSTCDMCE-LARNSVLQSGFE 453 (496)
T ss_pred -------------C--CCcHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHhCCC
Confidence 0 011333333344555799987755 577887777774
|
AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway. |
| >PLN03055 AMP deaminase; Provisional | Back alignment and domain information |
|---|
Probab=81.89 E-value=7.8 Score=41.16 Aligned_cols=91 Identities=11% Similarity=0.021 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhh
Q 009282 298 EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377 (538)
Q Consensus 298 ~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~ 377 (538)
.....++..++.+..||.+....+ ..+. .-++..++++|++++|+||.+.....
T Consensus 453 ~L~yl~~~~qI~LevCPlSN~~l~-------------~~y~----------~HP~~~~~~~Gl~VSInTDDPl~f~t--- 506 (602)
T PLN03055 453 GLQYLYYLAQIGLAMSPLSNNSLF-------------LDYH----------RNPFPMFFARGLNVSLSTDDPLQIHL--- 506 (602)
T ss_pred HHHHHHHHcCCeEEEccCcchhhc-------------cchh----------hChHHHHHHCCCEEEEcCCCcchhcC---
Confidence 666778889999999998743110 1111 13388999999999999997643110
Q ss_pred cCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 378 FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 378 ~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
. ...+...+..+....++|..+..+ .+.|+.++-+++
T Consensus 507 -------------T--~epL~eEY~~aa~~~~LS~~DL~e-LarNSV~~Sf~~ 543 (602)
T PLN03055 507 -------------T--KEPLVEEYSIAAQVWKLSSCDLCE-IARNSVLQSGFP 543 (602)
T ss_pred -------------C--CCcHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHhcCC
Confidence 0 001233333344555699988865 478888877774
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.71 E-value=43 Score=33.59 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=68.3
Q ss_pred HHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeee
Q 009282 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (538)
Q Consensus 128 ~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (538)
+.-...+..+|++.++-+-.-++. ++..++++..+.+........+..+....-+-..+-.+++. +.|++.+-+- +.
T Consensus 101 e~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~-~~g~DSIciK-Dm 178 (472)
T COG5016 101 EKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELL-EMGVDSICIK-DM 178 (472)
T ss_pred HHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHH-HcCCCEEEee-cc
Confidence 444567789999998854323333 55666666665554322222222222222233344445555 7888877442 22
Q ss_pred CCCccCCHHHHHHHHHHHH-hcCCeEEEEcCChh-hHHHHHHHHHHcCCCC
Q 009282 207 KGSFMINDELLIEGFKRCK-SLGALAMVHAENGD-AVFEGQKRMIELGITG 255 (538)
Q Consensus 207 ~~~~~~~~~~l~~~~~~A~-~~g~~v~~H~~~~~-~~~~~~~~~~~~g~~~ 255 (538)
.| ..++....+++...+ ..++++..|+.... ......-...+.|+..
T Consensus 179 aG--lltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~ 227 (472)
T COG5016 179 AG--LLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDG 227 (472)
T ss_pred cc--cCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhCcch
Confidence 22 346777777777775 56899998884432 2223333455666653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 538 | ||||
| 2ftw_A | 521 | Crystal Structure Of Dihydropyrimidinase From Dicty | 1e-133 | ||
| 2vr2_A | 541 | Human Dihydropyrimidinase Length = 541 | 1e-125 | ||
| 3dc8_A | 490 | Crystal Structure Of Dihydropyrimidinase From Sinor | 1e-120 | ||
| 1kcx_A | 518 | X-Ray Structure Of Nysgrc Target T-45 Length = 518 | 1e-114 | ||
| 2gse_A | 501 | Crystal Structure Of Human Dihydropyrimidinease-Lik | 1e-113 | ||
| 4b91_A | 484 | Crystal Structure Of Truncated Human Crmp-5 Length | 1e-99 | ||
| 4b90_A | 586 | Crystal Structure Of Wt Human Crmp-5 Length = 586 | 2e-99 | ||
| 1yny_A | 461 | Molecular Structure Of D-Hydantoinase From A Bacill | 4e-96 | ||
| 3sfw_A | 461 | Crystal Structure Of Dihydropyrimidinase From Brevi | 8e-96 | ||
| 1k1d_A | 460 | Crystal Structure Of D-Hydantoinase Length = 460 | 3e-91 | ||
| 1nfg_A | 457 | Structure Of D-Hydantoinase Length = 457 | 2e-78 | ||
| 1gkp_A | 458 | D-Hydantoinase (Dihydropyrimidinase) From Thermus S | 2e-77 | ||
| 2fty_A | 559 | Crystal Structure Of Dihydropyrimidinase From Sacch | 6e-53 | ||
| 1gkr_A | 458 | L-Hydantoinase (Dihydropyrimidinase) From Arthrobac | 3e-35 | ||
| 3hm7_A | 448 | Crystal Structure Of Allantoinase From Bacillus Hal | 4e-35 | ||
| 3e74_A | 473 | Crystal Structure Of E. Coli Allantoinase With Iron | 3e-34 | ||
| 3mpg_A | 428 | Dihydroorotase From Bacillus Anthracis Length = 428 | 2e-26 | ||
| 3gri_A | 424 | The Crystal Structure Of A Dihydroorotase From Stap | 1e-23 | ||
| 1xrf_A | 467 | The Crystal Structure Of A Novel, Latent Dihydrooro | 4e-19 | ||
| 3d6n_A | 422 | Crystal Structure Of Aquifex Dihydroorotase Activat | 5e-19 | ||
| 2z00_A | 426 | Crystal Structure Of Dihydroorotase From Thermus Th | 6e-07 | ||
| 2gwn_A | 452 | The Structure Of Putative Dihydroorotase From Porph | 2e-05 | ||
| 3ooq_A | 396 | Crystal Structure Of Amidohydrolase From Thermotoga | 6e-04 |
| >pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Dictyostelium Discoideum Length = 521 | Back alignment and structure |
|
| >pdb|2VR2|A Chain A, Human Dihydropyrimidinase Length = 541 | Back alignment and structure |
|
| >pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From Sinorhizobium Meliloti Length = 490 | Back alignment and structure |
|
| >pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45 Length = 518 | Back alignment and structure |
|
| >pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2 Length = 501 | Back alignment and structure |
|
| >pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Length = 484 | Back alignment and structure |
|
| >pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5 Length = 586 | Back alignment and structure |
|
| >pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp. Ar9: Evidence For Mercury Inhibition Length = 461 | Back alignment and structure |
|
| >pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From Brevibacillus Agri Nchu1002 Length = 461 | Back alignment and structure |
|
| >pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase Length = 460 | Back alignment and structure |
|
| >pdb|1NFG|A Chain A, Structure Of D-Hydantoinase Length = 457 | Back alignment and structure |
|
| >pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In Space Group C2221 Length = 458 | Back alignment and structure |
|
| >pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From Saccharomyces Kluyveri Length = 559 | Back alignment and structure |
|
| >pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter Aurescens Length = 458 | Back alignment and structure |
|
| >pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans C-125 Length = 448 | Back alignment and structure |
|
| >pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions At The Metal Center Length = 473 | Back alignment and structure |
|
| >pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis Length = 428 | Back alignment and structure |
|
| >pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From Staphylococcus Aureus Length = 424 | Back alignment and structure |
|
| >pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase From Aquifex Aeolicus At 1.7 A Resolution Length = 467 | Back alignment and structure |
|
| >pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By Aspartate Transcarbamoylase Length = 422 | Back alignment and structure |
|
| >pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus Thermophilus Length = 426 | Back alignment and structure |
|
| >pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From Porphyromonas Gingivalis Length = 452 | Back alignment and structure |
|
| >pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga Maritima Msb8 Length = 396 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} Length = 490 | Back alignment and structure |
|---|
Score = 653 bits (1686), Expect = 0.0
Identities = 221/469 (47%), Positives = 304/469 (64%), Gaps = 4/469 (0%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+IKGGT+V A ADV VE G +V + PN+ + LDATG +VMPGGIDPHTH
Sbjct: 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNL---SGAETLDATGCYVMPGGIDPHTH 58
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172
L M FMG+ + DDF SG AALAGGTTM +DF +P G SL ++ K+ + DY
Sbjct: 59 LEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYS 118
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMAIT W E V +EME +VK+KGIN+FK FMAYKG+ M++D+ + F+RC +LGAL +
Sbjct: 119 FHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMVDDDEMFSSFQRCAALGALPL 178
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
VHAENGD V + Q +++ G +GPE HA SRP +EGEA RAI +A+ P+Y+VH
Sbjct: 179 VHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
A E I +AR G RV GEP++ L LD++ + D+ AA+ VMSPP R H +L
Sbjct: 239 CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSL 298
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
A LA+G LQ+V TDHCAF + QK FG+ DF +IPNG G+E+RM ++W V +G+I++
Sbjct: 299 WAGLASGSLQVVATDHCAFTTEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITM 358
Query: 413 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 472
++V +TST A+I N+YP+KGAILVG+DAD+++++P S I+A++ S +D NV+EG+
Sbjct: 359 NEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRSKTISAKTQQSAIDYNVFEGK 418
Query: 473 RVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADA 521
V G T+ G V E + G G+++ PF + L
Sbjct: 419 TVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFVRRDPFPAVSTALSTWKE 467
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* Length = 458 | Back alignment and structure |
|---|
Score = 639 bits (1652), Expect = 0.0
Identities = 162/459 (35%), Positives = 253/459 (55%), Gaps = 4/459 (0%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG IDPH H+
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHI 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYG 172
+ FM + D +G AAL GGTT +I+ P G++ ++ KA+ NS DY
Sbjct: 62 YLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYT 121
Query: 173 FHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAM 232
FHMA++K+DE ++ +V + GI+SFK F++YK F ++D + + + K LG +
Sbjct: 122 FHMAVSKFDEKTEGQLREIVAD-GISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVT 180
Query: 233 VHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292
H EN + V Q++++ G TGPE H SRP +E E T R E YVVH+
Sbjct: 181 AHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240
Query: 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKAL 352
A++ A+ G + E V+ +LD ++ V A KY+MSPP+R + K L
Sbjct: 241 CKPALDAAMAAKARGVPIYIESVIPHFLLDKTY-AERGGVEAMKYIMSPPLRDKRNQKVL 299
Query: 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISV 412
ALA G + VGTDHC F++ QK G + F IPNG+ IE+R++L++ V G++ +
Sbjct: 300 WDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDI 359
Query: 413 TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 472
+V ST+ A++F ++PRKG I VGSDAD+++++P I+ ++ H D N +EG
Sbjct: 360 HRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTISVKTQHVNNDYNGFEGF 419
Query: 473 RVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNY 511
+ G+ V G+V + + G GK + P +
Sbjct: 420 EIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPMYF 458
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 Length = 521 | Back alignment and structure |
|---|
Score = 641 bits (1656), Expect = 0.0
Identities = 251/486 (51%), Positives = 330/486 (67%), Gaps = 4/486 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+ ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++PGGID
Sbjct: 6 QTGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDT 65
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K A
Sbjct: 66 HTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVN 125
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FKRCK LG
Sbjct: 126 CDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELG 185
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V TP+Y+
Sbjct: 186 AIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYI 245
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PPIR
Sbjct: 246 VHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPR 305
Query: 349 NK-ALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
K L LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW+ V +
Sbjct: 306 TKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNT 365
Query: 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467
G+++ +VR TS+E ARIFN+YPRKG I VG D DI+I++PN S I+ +HH +D N
Sbjct: 366 GKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFN 425
Query: 468 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSL 527
++EG +V G TI G +VW +++L+ V GSG+++ PF +F G+++ D K + L
Sbjct: 426 IFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRD-KVRNEL 484
Query: 528 QAPVKR 533
V R
Sbjct: 485 LRKVDR 490
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A Length = 501 | Back alignment and structure |
|---|
Score = 639 bits (1650), Expect = 0.0
Identities = 210/474 (44%), Positives = 302/474 (63%), Gaps = 4/474 (0%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
+S ++LIKGG +VN AD+Y+EDG++ + N+ V VK ++A + V+PGGID
Sbjct: 24 TSDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDV 83
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC 168
HT M G + DDFF G AALAGGTTM ID V+P G SL A F+ + + A SC
Sbjct: 84 HTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSC 143
Query: 169 MDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLG 228
DY H+ I++W + + +EME +VK+ G+NSF +MA+K F + D + E + +G
Sbjct: 144 CDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDRFQLTDCQIYEVLSVIRDIG 203
Query: 229 ALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288
A+A VHAENGD + E Q+R+++LGITGPEGH LSRP +E EA RAI +A N PLY+
Sbjct: 204 AIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYI 263
Query: 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGH 348
VMS + E IA+ARK G V GEP+ + L D S W ++ AA +V SPP+
Sbjct: 264 TKVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPT 323
Query: 349 N-KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
L + L+ G LQ+ G+ HC FN+ QKA G D+F IP G NG EERM ++WD V +
Sbjct: 324 TPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVT 383
Query: 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467
G++ +V +TST A++FN+YPRKG I VGSDAD++I++P+S I+A++H+S L+ N
Sbjct: 384 GKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYN 443
Query: 468 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF-NYLFHGLDKAD 520
++EG +G V I+ G++V E+ L+V GSG+YI +PF ++++ +
Sbjct: 444 IFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPFPDFVYKRIKARS 497
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} Length = 541 | Back alignment and structure |
|---|
Score = 640 bits (1654), Expect = 0.0
Identities = 239/513 (46%), Positives = 326/513 (63%), Gaps = 14/513 (2%)
Query: 32 NNLFCDAGSEYGGPQCGIQSSSK---ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN 88
++ +G + G QS + +LI+GG VVN ++ADV VEDG+V A+ ++
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMAAPSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLL 62
Query: 89 ----VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHID 144
++VLDA GK V+PGGID HTH+ FMGS +IDDF G AAL+GGTTM ID
Sbjct: 63 PPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIID 122
Query: 145 FVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKF 202
F IP G SL FE + A C DY H+A+T W + V +EM+++V++KG+NSFK
Sbjct: 123 FAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKM 182
Query: 203 FMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262
FMAYK +M+ D L E F RCK +GA+A VHAENGD + EG K+M+ LGITGPEGH L
Sbjct: 183 FMAYKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELC 242
Query: 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322
RP +E EAT RAI +A VN PLY+VHVMS A + IA AR+ G+ V GEP+ + L D
Sbjct: 243 RPEAVEAEATLRAITIASAVNCPLYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTD 302
Query: 323 DSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGID 381
+ W+ ++ AA +VM PP+R L LA L GTD+C FN+ QKA G D
Sbjct: 303 GTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKALGKD 362
Query: 382 DFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 441
DF KIPNGVNG+E+RM ++W+ V SG++ +V +TST A+IFN+YPRKG I VGSD
Sbjct: 363 DFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSD 422
Query: 442 ADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSG 501
ADI+I++P + I+A++HH ++ N++EG G VTI+ G+VV+E +V G G
Sbjct: 423 ADIVIWDPKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDG 482
Query: 502 KYIEMRPF-NYLFHGLDKADAKYLSSLQAPVKR 533
K+I +PF Y++ + + D + PV+R
Sbjct: 483 KFIPRKPFAEYIYKRIKQRDR---TCTPTPVER 512
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* Length = 461 | Back alignment and structure |
|---|
Score = 637 bits (1645), Expect = 0.0
Identities = 203/460 (44%), Positives = 278/460 (60%), Gaps = 5/460 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+ GTVV A ADV ++ VVA+ ++ D +V+DATG +++PGGIDPHTH
Sbjct: 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQATDA-EVIDATGYYLLPGGIDPHTH 60
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
L M F G+ T D+FF+G AA GGTT +DF + G SL + + +KA+ + +DY
Sbjct: 61 LDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDY 120
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
GFH+ ++ ++ V +E+E +V +GI S K FMAYK M +DE L + R K LGAL
Sbjct: 121 GFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLMADDETLFKTLIRAKELGALV 180
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
VHAENGD + K+ + G T P HA +RPP EGEAT RAI L + LYVVHV
Sbjct: 181 QVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
DA+ IA+AR+ G V GE LVLD + L DF AKYV SPP+R +
Sbjct: 241 SCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDFE-GAKYVWSPPLREKWNQDV 299
Query: 352 LQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
L +AL GILQ VG+DHC FN S QK G DF KIPNG IE+RM +++ V G+I
Sbjct: 300 LWSALKNGILQTVGSDHCPFNFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKI 359
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
S+ +V +TST+ A++F ++P+KG I VGSDADI++F+P I+ +HH +D N +E
Sbjct: 360 SLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPTVQRTISVETHHMNVDYNPFE 419
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510
G +V G V ++ G V N + G+G+Y++ F
Sbjct: 420 GMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVKRSTFA 459
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 Length = 457 | Back alignment and structure |
|---|
Score = 623 bits (1610), Expect = 0.0
Identities = 175/459 (38%), Positives = 265/459 (57%), Gaps = 8/459 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
I+IK GT+V A AD+ ++DG + + + + + +DA G++V PGGID HTH
Sbjct: 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPGGIDVHTH 59
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDY 171
+ +++ D F + AA GGTT +DF G SL ++ A S +DY
Sbjct: 60 VETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDY 119
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALA 231
G+H+ + + V +E+EV+ + GI SFK FMAY+G MI+D L++ + G+L
Sbjct: 120 GYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLV 178
Query: 232 MVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291
MVHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN P+Y+VHV
Sbjct: 179 MVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238
Query: 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351
+++EE+ +A+ G R + E L L L DF AKYV +PP RA +
Sbjct: 239 TCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPARAKKDHDV 297
Query: 352 LQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQI 410
L AL G+ + V +DHC++ K G +DFR IPNG G+EER+ +V+ V G+I
Sbjct: 298 LWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRI 356
Query: 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470
S+T +V L +T A++F ++P+KG I VGSDADI++++P + I + H+ +D + YE
Sbjct: 357 SLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYE 416
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 509
G +VKG + + G+V+ + P GK+++ R +
Sbjct: 417 GHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKY 455
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 Length = 458 | Back alignment and structure |
|---|
Score = 599 bits (1546), Expect = 0.0
Identities = 124/462 (26%), Positives = 212/462 (45%), Gaps = 14/462 (3%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMPG +D H
Sbjct: 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHV 61
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMD 170
H+ ++ F +A GG T I+ I + F +K+A +D
Sbjct: 62 HI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVD 120
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM---INDELLIEGFKRCKSL 227
+ + + E+ M + G FK MA M ++D L E F+ +
Sbjct: 121 FALYGGGVPGNL---PEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAAC 176
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ +VHAEN + QK++ G + S+P E EA RA+ L + L
Sbjct: 177 GSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCRLI 236
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASG 347
V+HV + D +E I +A+ GQ V E L + ++PP+R++
Sbjct: 237 VLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERI----GPYMKVAPPVRSAE 292
Query: 348 HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407
N L L G++ +G+DH K G D K NG G+E + ++ V
Sbjct: 293 MNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNK 352
Query: 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467
G++S+ V + + A++F +YP+KG + VGSDAD++I + + ++ A S +
Sbjct: 353 GRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDIDTKVDASQFRSLHKYS 412
Query: 468 VYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 509
++G V G +T+ G VV E E+ V G G+++ R +
Sbjct: 413 PFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTRRNY 454
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* Length = 559 | Back alignment and structure |
|---|
Score = 558 bits (1439), Expect = 0.0
Identities = 148/540 (27%), Positives = 248/540 (45%), Gaps = 66/540 (12%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK G + A A++ V +G V + +I+ +V+DA G F+ PGGID H H+
Sbjct: 5 LIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHV 64
Query: 115 AMEF-MGSETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEA------YEKKAKN 166
+ + +D +A+AGGTT + F ++ + E +
Sbjct: 65 DEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQT 124
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSFMINDELLIE 219
DYG H+ + + ++ + E++ + G++S K FM Y G I+D ++
Sbjct: 125 LYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPG-LQISDYDIMS 183
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G M+HAENGD V + + E G+T H +SRP ++EGEAT RAI LA
Sbjct: 184 AMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLA 243
Query: 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT------ 333
++TP+ VHV S A E I +A+ G +V E +L D+
Sbjct: 244 TTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGV 303
Query: 334 --------------------AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373
+KY+ SPPIR G K++ + G +VG+DHC++N
Sbjct: 304 GIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNY 363
Query: 374 TQKAFGI-------------DDFRKIPNGVNGIEERMHLVWDTMVESGQI-SVTDYVRLT 419
+K +FR IPNG+ G+ RM L++D G + S+ V +
Sbjct: 364 YEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQ 423
Query: 420 STECARIFNVYPRKGAILVG-SDADIIIFNPNSS--------FEITARSHHSRLDTNVYE 470
T A+++ +YP+KG+IL G SDAD++I+ P+ S IT + D +E
Sbjct: 424 CTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFE 483
Query: 471 GRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYLSSLQAP 530
G +K TI G++V++ E+ GKY++ R +++ ++ ++ ++P
Sbjct: 484 GIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLK-RGKSFMCTPKNEWVTEWRPKYESP 542
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} Length = 473 | Back alignment and structure |
|---|
Score = 466 bits (1201), Expect = e-161
Identities = 122/460 (26%), Positives = 204/460 (44%), Gaps = 26/460 (5%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++IK GTV+ + ++ D+ V+ G + A+ ++ +V+DA+G V PG +D HTH+
Sbjct: 25 LIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAK--EVMDASGLVVSPGMVDAHTHI 82
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAKNSCM-DY 171
+ G + + +G AA GG T I+ + + A E AK D
Sbjct: 83 SE--PGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 140
Query: 172 GFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM-------INDELLIEGFKRC 224
+ ++ D + + + G+ FK F+A G +ND +G ++
Sbjct: 141 AQLGGLVSYNI---DRLHELDEV-GVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKL 196
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
LG +VH EN E + G + SRP E EA R + LA+
Sbjct: 197 GELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGC 256
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344
L+V HV S + +EE+ +AR+ GQ + E VLD SPPIR
Sbjct: 257 RLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEEIG----TLAKCSPPIR 312
Query: 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404
+ K + L G + + +DH KA + K G+ G++ M +++D
Sbjct: 313 DLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKA---GNIMKAWGGIAGLQSCMDVMFDEA 369
Query: 405 VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 464
V+ +S+ + +L +T A IF + +KG I G DAD + PNSS+ +T R
Sbjct: 370 VQKRGMSLPMFGKLMATNAADIFGL-QQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRH 428
Query: 465 DTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYI 504
+ Y GR + ++ TI G V+++ ++ V G++I
Sbjct: 429 KVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFI 468
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} Length = 448 | Back alignment and structure |
|---|
Score = 455 bits (1173), Expect = e-157
Identities = 119/453 (26%), Positives = 206/453 (45%), Gaps = 21/453 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTH 113
++I+ TVV ADV + +GIV A+ ++ DD +D TG + PG +D H H
Sbjct: 8 LIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVH 67
Query: 114 LAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEAYEKKAK-NSCMD 170
G + F SG + AGG T + D + N + + A S +D
Sbjct: 68 FNE--PGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVD 125
Query: 171 YGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS---FMINDELLIEGFKRCKSL 227
Y F + + D ++ + G+ FK FM+ G+ +DE L++G K+ +L
Sbjct: 126 YRFWGGLVPGNI---DHLQDLHDG-GVIGFKAFMSECGTDDFQFSHDETLLKGMKKIAAL 181
Query: 228 GALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLY 287
G++ VHAE+ + V IE + ++ +RP + E EA R +R A+ P++
Sbjct: 182 GSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTCCPIH 241
Query: 288 VVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT-AAKYVMSPPIRAS 346
+ HV S ++ I +A+ G V E L+ +F +PP+R
Sbjct: 242 ICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSLD-----EFAEIGYLAKCAPPLRER 296
Query: 347 GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
+ L L G + L+ +DH K ++ G+ G + + ++
Sbjct: 297 QEVEDLWDGLMAGEIDLISSDHSPSLPQMKTGK--TIFEVWGGIAGCQNTLAVMLTEGYH 354
Query: 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDT 466
++ +T V+L STE A+ F +YP+KG I VG++A + + N S+ + A + R
Sbjct: 355 KRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESYTLNASDLYYRHPI 414
Query: 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPG 499
+ Y G+R +GKV+ TI G+ V+++ E +
Sbjct: 415 SPYVGQRFRGKVKHTICQGKHVYQDHEGHHHHH 447
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} Length = 452 | Back alignment and structure |
|---|
Score = 278 bits (714), Expect = 2e-88
Identities = 92/468 (19%), Positives = 178/468 (38%), Gaps = 32/468 (6%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGID 109
KIL++ + N V ++ + + DD +V++ +G + PG ID
Sbjct: 5 KILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCID 64
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN- 166
H E G S AA+AGG T +D P + +
Sbjct: 65 DQVHF-REP-GLTHKATIASESRAAVAGGVTSFMDMPNTNPPTTMWER-LLEKRQIGADT 121
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY-KGSFMINDELLIEGFKRCK 225
+ +YGF T D + DE++ + + + K F+ G+ +++++ +E K
Sbjct: 122 AWANYGFFFGGTN-DNI--DEIKRV-DKHLVPGLKLFLGSSTGNMLVDNKETLE--KIFG 175
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGIT--GPEGHALSRPPLLEGEATTRAIRLAEFVN 283
L H E + + ++ H L R ++ A+ LAE +N
Sbjct: 176 ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAERMN 235
Query: 284 TPLYVVHVMSMDAMEEIAKARK-AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
L+++H+ + + A +R+ E V L D+ K +P
Sbjct: 236 ARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDY--GRLGNRIK--WNPA 291
Query: 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWD 402
I+ +AL+AA+ G + ++ TDH +K + +G ++ + +
Sbjct: 292 IKKESDREALRAAVRNGRIDIIATDHAPHLLREKE---GSCLQAASGGPLVQHSLLALL- 347
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHS 462
+ G S+ + V T+ A +F + ++G I G AD+++ +P+S ++A + S
Sbjct: 348 ELCNQGIFSIEEIVSKTAHIPATLFAI-EKRGYIRPGYYADLVLVDPSSPHTVSADNILS 406
Query: 463 RLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510
+ +EG V T G + + L + + FN
Sbjct: 407 LCGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLF---FN 451
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} Length = 424 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 9e-64
Identities = 113/472 (23%), Positives = 185/472 (39%), Gaps = 82/472 (17%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
LIK G V+ Q AD+ ++ ++ + P I + V ++DA G FV PG +D H HL
Sbjct: 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHL 61
Query: 115 AMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN-- 150
E G E + +G AA GG TT+ + + +
Sbjct: 62 R-E-PGGEYKETIETGTKAAARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVL 119
Query: 151 --GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208
S+T G + + + ++G +F G
Sbjct: 120 PYASITTRQL-------------GKELV----------DFPAL-VKEGAFAF----TDDG 151
Query: 209 SFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHALSR 263
+ ++ EG + + H E G A+ EG KR ELGI G
Sbjct: 152 VGVQTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGAMHEG-KRSKELGIPG-------I 203
Query: 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG--LVL 321
P + E R + LAE +V HV + +++ I A++AG V E V+ L+L
Sbjct: 204 PNICESVQIARDVLLAEAAGCHYHVCHVSTKESVRVIRDAKRAGIHVTAE--VTPHHLLL 261
Query: 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGID 381
+ + K M+PP+R++ +AL L G + + TDH +KA
Sbjct: 262 TEDDI--PGNNAIYK--MNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKA---Q 314
Query: 382 DFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 441
K P G+ G E L++ V++G ++ V + + FN+ G +
Sbjct: 315 PMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNL--EYGTLKENGY 372
Query: 442 ADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
AD+ I + +S EI S+ D + G +V G +T+ G V +E D+
Sbjct: 373 ADLTIIDLDSEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGDK 424
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} Length = 428 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 4e-61
Identities = 115/474 (24%), Positives = 190/474 (40%), Gaps = 84/474 (17%)
Query: 54 KILIKGGTVVN-AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
L K G +N D+ V+DG + V NI D+ +V+D GK + PG +D H
Sbjct: 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHV 60
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------PIN 150
HL E G E + +G AA GG TT+ ++ + +N
Sbjct: 61 HLR-E-PGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVN 118
Query: 151 ----GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
G++T G M + E + KE G +F
Sbjct: 119 VLPYGAITVRQA-------------GSEMT----------DFETL-KELGAFAF----TD 150
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + + +++ KR L + H E N V EG K + G+ G
Sbjct: 151 DGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEG-KFSEKHGLNG------ 203
Query: 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG--L 319
P + E R I LAE + +V HV + ++ I A++AG +V E V+ L
Sbjct: 204 -IPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAE--VTPHHL 260
Query: 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG 379
VL + + K M+PP+R ++AL L G + ++ TDH + +KA
Sbjct: 261 VLCEDDI--PSADPNFK--MNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKA-- 314
Query: 380 IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 439
+ P G+ G E L++ +V+ G I++ ++ + + A F + G + G
Sbjct: 315 -QGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGL--EAGRLKEG 371
Query: 440 SDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
ADI I + EI + S+ + G + +G +TI GG++ W+ +
Sbjct: 372 RTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* Length = 467 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 5e-58
Identities = 107/474 (22%), Positives = 196/474 (41%), Gaps = 88/474 (18%)
Query: 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
K+++K G V++ D+ VE+G + + NI + +++DA G V PG ID
Sbjct: 47 LKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDI 105
Query: 111 HTHLAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI-------- 147
H HL + G +D SG A+AGG TT+ +++++
Sbjct: 106 HVHLR-D-PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGL 163
Query: 148 ----PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFF 203
P G++T G + G +A + + KE G +F
Sbjct: 164 CRVLPT-GTITKGRK-------------GKEIA----------DFYSL-KEAGCVAF--- 195
Query: 204 MAYKGSFMINDELLIEGFKRCKSLGALAMVHAE----NGDAVFEGQKRMIELGITGPEGH 259
GS +++ ++ + + LG M H E + EG + LG++
Sbjct: 196 -TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEG-EVSALLGLSS---- 249
Query: 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSG- 318
R P E R LA+ +++ HV + ++E I ++ G ++ E V+
Sbjct: 250 ---RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCE--VNPN 304
Query: 319 -LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKA 377
L+ + + + A+ ++PP+R AL + GI+ TDH + +K
Sbjct: 305 HLLFTEREV--LNSGANAR--VNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK- 359
Query: 378 FGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAIL 437
+ G+ G++ + + G IS+ + + + ARI V G +
Sbjct: 360 ---ELVEFAMPGIIGLQTALPSAL-ELYRKGIISLKKLIEMFTINPARIIGV--DLGTLK 413
Query: 438 VGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
+GS ADI IF+PN + + ++ S+ G+ +KGKV TI G++V+++
Sbjct: 414 LGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} Length = 426 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 1e-53
Identities = 102/480 (21%), Positives = 179/480 (37%), Gaps = 96/480 (20%)
Query: 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
ILI+ +V+A + ADV + +G +++++ G+ +V+D TG F+ PG +D H H
Sbjct: 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEG----GEAKQVVDGTGCFLAPGFLDLHAH 57
Query: 114 LAMEFMGSETIDDFFSGQAAALAGG-TTMH--------------IDFVI----------- 147
L E G E +D FSG AA+ GG T + + +
Sbjct: 58 LR-E-PGEEVKEDLFSGLLAAVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARL 115
Query: 148 -PINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206
P +LT E G + ++ +E G
Sbjct: 116 HPA-AALTEKQE-------------GKTLT----------PAGLL-REAGAVLL----TD 146
Query: 207 KGSFMINDELLIEGFKRCKSLGALAMVHAE-----NGDAVFEGQKRMIELGITGPEGHAL 261
G + +L G LG VHAE + +G LG+ G
Sbjct: 147 DGRTNEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDG-PLADLLGLPG------ 199
Query: 262 SRPPLLEGEATTRAIRLAEFVNTP------LYVVHVMSMDAMEEIAKARKAGQRVIGEPV 315
PP E R + + + L+V H+ + +E + +A++AG V E
Sbjct: 200 -NPPEAEAARIARDLEVLRYALRRSPATPRLHVQHLSTKRGLELVREAKRAGLPVTAE-- 256
Query: 316 VSG--LVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373
+ L L + L F K ++PP+R +AL L G L + TDH
Sbjct: 257 ATPHHLTLTEEAL--RTFDPLFK--VAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTL 312
Query: 374 TQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRK 433
+K D + P G+ +E L++ + + V L + R+ +
Sbjct: 313 AEKE---KDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGL--PP 367
Query: 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493
+ G++A +++ +P + + S+ + + G + G +T+ GR+V E +
Sbjct: 368 LHLEEGAEASLVLLSPKER-PVDPSAFASKARYSPWAGWVLGGWPVLTLVAGRIVHEALK 426
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* Length = 569 | Back alignment and structure |
|---|
Score = 160 bits (405), Expect = 7e-43
Identities = 56/422 (13%), Positives = 118/422 (27%), Gaps = 49/422 (11%)
Query: 43 GGPQCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVG 90
+ ++I +V+ AD+ ++DG + V+ N++VG
Sbjct: 56 SQSNNPSKEELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVG 115
Query: 91 DDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN 150
+ L G V GGID H H + F SG + GGT
Sbjct: 116 PATEALAGEGLIVTAGGIDTHIHFISP---QQIPTAFASGVTTMIGGGTGPADGTNATTI 172
Query: 151 GSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210
+ + A+ M+ GF ++ + E G FK + +
Sbjct: 173 TPGRRNLKWMLRAAEEYSMNLGFLAKGNASNDASLADQI----EAGAIGFKIHEDWGTTP 228
Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270
+ L +H + + + M + EG
Sbjct: 229 SAINHAL----DVADKYDVQVAIHTDTLNEAGCVEDTMAAIA------GRTMHTFHTEGA 278
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330
A + + + + V E +++ S
Sbjct: 279 GGGHAPDIIKVAGEHNILPA----------STNPTIPFTVNTEAEHMDMLMVCHHKDKSI 328
Query: 331 FVTAAKYVMSPPIRASGHNKALQAALA-TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG 389
++ S A + L G + +D A + +
Sbjct: 329 KE-DVQFADSRIRP---QTIAAEDTLHDMGAFSITSSDSQAMGRVG-----EVITRTWQT 379
Query: 390 VNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 449
+ ++ + + ++ + Y+ + A + G++ VG AD+++++P
Sbjct: 380 ADKNKKEFGRLKEEKGDNDNFRIKRYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSP 439
Query: 450 NS 451
Sbjct: 440 AF 441
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* Length = 570 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 2e-37
Identities = 75/476 (15%), Positives = 130/476 (27%), Gaps = 88/476 (18%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVA------------VQPNINVGDDVKVLDATGKF 102
+L+ +++ AD+ V+DG +V V PN+ VG +V+ A GK
Sbjct: 69 LLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKI 128
Query: 103 VMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGG-TTMHIDFVIPINGSLTAG----- 156
V GGID H H ALA G TT+ P GS
Sbjct: 129 VTAGGIDTHVHFINP-----------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGP 177
Query: 157 --FEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMIND 214
E K + ++ G E + G K +
Sbjct: 178 WNIEKMLKSTEGLPINVGILGKGHGSSIAPIMEQ----IDAGAAGLKIHEDWG----ATP 229
Query: 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTR 274
+ +H++ + + + + +EG
Sbjct: 230 ASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTL------RAINGRVIHSFHVEGAGGGH 283
Query: 275 AIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334
A + P + R I E + +V +
Sbjct: 284 APDIMAMAGHPNVLPSS--------TNPTRPFTVNTIDEHLDMLMVCHHL---KQNIPED 332
Query: 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIE 394
+ S + + + GI+ ++ TD A G R +
Sbjct: 333 VAFADSRIRPETIAAEDI--LHDLGIISMMSTDALAMG----RAGEMVLRTWQTADKMKK 386
Query: 395 ERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFE 454
+R L + S + YV + A + G+I G AD++++ P F
Sbjct: 387 QRGPL-AEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEP-KFFG 444
Query: 455 ITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW--ENDELNVVPGSGKYIEMRP 508
+ K + I GG + + D +P + R
Sbjct: 445 V---------------------KADRVIKGGIIAYAQIGDPSASIPTPQPVM-GRR 478
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* Length = 390 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 6e-28
Identities = 77/457 (16%), Positives = 155/457 (33%), Gaps = 88/457 (19%)
Query: 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGG 107
++ L++G + + I DV V +G ++AV NI + + V+D +G+ + PG
Sbjct: 5 TAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGF 64
Query: 108 IDPHTHLAM-EFMGSETIDDFFSGQAAALAGGTTMHI-----DFVIPINGSLTAGFEAYE 161
ID H HL T + G T + D + SL A A
Sbjct: 65 IDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALN 124
Query: 162 KKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGF 221
++ ++ M G + ++ S E +V + ++ I + S + L
Sbjct: 125 EEGISAWMLTGAYHVPSR-TITGSVEKDVAIIDRVIGVKCAISDH-RSAAPDVYHLANMA 182
Query: 222 KRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281
+ G L G+ + + G + + + +
Sbjct: 183 AESRVGGLLG------------GKPGVTVFHM----GDSKK-----ALQPIYDLLENCDV 221
Query: 282 VNTPLYVVHV-MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340
+ L HV ++ E+ + + G + +T++ +
Sbjct: 222 PISKLLPTHVNRNVPLFEQALEFARKGGTI--------------------DITSS---ID 258
Query: 341 PPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399
P+ + G +A+QA + + L + + + GV G E +
Sbjct: 259 EPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDD-----EGNLTHIGVAGFETLLET 313
Query: 400 VWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARS 459
V +V+ S++D +R ++ A N+ KG IL G+DAD+++ P I
Sbjct: 314 VQV-LVKDYDFSISDALRPLTSSVAGFLNL-TGKGEILPGNDADLLVMTPE--LRIEQ-- 367
Query: 460 HHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 496
A G+++ ++ + V
Sbjct: 368 ---------------------VYARGKLMVKDGKACV 383
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 Length = 379 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 2e-27
Identities = 66/442 (14%), Positives = 121/442 (27%), Gaps = 81/442 (18%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G VN ++ +++ + AV I+ + G +V G ID H H
Sbjct: 7 LLIKNGQTVNG---MPVEIAIKEKKIAAVAATISGSAKETIHLEPGTYVSAGWIDDHVHC 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174
F D+ + G T ID + + A+ + +
Sbjct: 64 ---FEKMALYYDYPD--EIGVKKGVTTVIDA----GTTGAENIHEFYDLAQQAKTNVFGL 114
Query: 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH 234
+ I+KW V DE+ + K + K + G K S +
Sbjct: 115 VNISKWGIVAQDELADLSKVQASLVKKAIQELPD--------FVVGIKARMSRTVIGDNG 166
Query: 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294
+ + Q+ E+ + G A + + F ++ +
Sbjct: 167 ITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALMEKGDVLTHCFNGKENGILDQATD 226
Query: 295 DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQA 354
+ +A G S + +
Sbjct: 227 KIKDFAWQAYNKGVV----------------------------FDIGHGTDSFNFHVAET 258
Query: 355 ALATGIL-QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVT 413
AL G+ + TD N NG + + + G
Sbjct: 259 ALREGMKAASISTDIYIRNR----------------ENGPVYDLATTMEKLRVVGY-DWP 301
Query: 414 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473
+ + + A F++ +KG + +G DAD+ IF G
Sbjct: 302 EIIEKVTKAPAENFHL-TQKGTLEIGKDADLTIFTI----------QAEEKTLTDSNGLT 350
Query: 474 VKG----KVEVTIAGGRVVWEN 491
+ TI GG++
Sbjct: 351 RVAKEQIRPIKTIIGGQIYDNE 372
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} Length = 417 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 2e-25
Identities = 68/476 (14%), Positives = 135/476 (28%), Gaps = 94/476 (19%)
Query: 44 GPQCGIQSSSKILIKGGTVV---NAHHQQIADVYVE-DGIVVAVQPNINVGDDVKVLDAT 99
G Q + IL+ V Q D+ + DG + AV + D + +DA
Sbjct: 6 GEQAKTPLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAK 65
Query: 100 GKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159
G F+ PG +D H H+ +I G T +D
Sbjct: 66 GAFISPGWVDLHVHI-WHGGTDISIR----PSECGAERGVTTLVDAGSA----------- 109
Query: 160 YEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIE 219
++ + + + G+ + + I+ + ++E
Sbjct: 110 -------GEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILE 162
Query: 220 GFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279
+ G K ITG G ++A
Sbjct: 163 CYAE--------------NSEHIVGLKVRASHVITGSWGV----------TPVKLGKKIA 198
Query: 280 EFVNTPLYVVHVMSMDA-MEEIAKARKAGQRV--IGEPVVSGLVLDDSWLWHS--DFVTA 334
+ + P+ +VHV A +E+ + G V +++D L++
Sbjct: 199 KILKVPM-MVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGE 257
Query: 335 AKYVMSPPIRASGHNKALQAALATGILQL-VGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393
+ AS K +AA+A G+L + TD + +
Sbjct: 258 GIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWD-------------- 303
Query: 394 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSF 453
+ ++ + V + A + + + + VG AD +F+
Sbjct: 304 ---LATTMSKLLSVDM-PFENVVEAVTRNPASVIRL-DMENRLDVGQRADFTVFDLV--- 355
Query: 454 EITARSHHSRLDTNVYEGRRVKGK----VEVTIAGGRVVWENDELNVVPGSGKYIE 505
+ L+ G + K + G + + + P + K +
Sbjct: 356 -------DADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI---PRARKLVR 401
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} Length = 396 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 1e-17
Identities = 79/441 (17%), Positives = 139/441 (31%), Gaps = 98/441 (22%)
Query: 52 SSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDP 110
S KIL K TV + DV V +G V V NI D +++D TGKF+ PG +D
Sbjct: 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIED-PDAEIVDLTGKFLFPGFVDA 62
Query: 111 HTHLAM--EFMGSETIDDFFSGQAA-------------------ALAGGTTMHIDFVIPI 149
H+H+ + E +G D + ALAGG T ++P
Sbjct: 63 HSHIGLFEEGVGYYYSDGNEATDPVTPHVKALDGFNPQDPAIERALAGGVTSV--MIVPG 120
Query: 150 NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209
+ + G + +E + + + G N + + K +
Sbjct: 121 SANPVGGQGSV------------IKFRSIIVEECIVKDPAGLKMAFGENPKRVYGERKQT 168
Query: 210 F---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPL 266
M ++ + F + K+ + + G E +M +R
Sbjct: 169 PSTRMGTAGVIRDYFTKVKNYMKKKELAQKEGKEFTETDLKMEVG-EMVLRKKIPARMHA 227
Query: 267 LEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSW 325
+ AIR+AE L + H + + + + V+ P ++
Sbjct: 228 HRADDILTAIRIAEEFGFNLVIEHGTEAYKISKVL---AEKKIPVVVGP-------LLTF 277
Query: 326 -----LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGI 380
L T AK L G+L + DH
Sbjct: 278 RTKLELKDLTMETIAK---------------LLKD---GVLIALMCDHPVIPL------- 312
Query: 381 DDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 440
R + +++ LT A+I + R G+I G
Sbjct: 313 ---EFATVQA-ATAMRYGAKEEDLLKI----------LTVNP-AKILGLEDRIGSIEPGK 357
Query: 441 DADIIIFNPNSSFEITARSHH 461
DAD+++++ F++ +
Sbjct: 358 DADLVVWS-GHPFDMKSVVER 377
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} Length = 386 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 1e-16
Identities = 57/323 (17%), Positives = 102/323 (31%), Gaps = 34/323 (10%)
Query: 53 SKILIK-GGTVVNAHHQ----QIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMP 105
SK +IK G +V+ + Q + VEDG++ A+ + D ++DA G V P
Sbjct: 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTP 61
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE---- 161
G +D H H+ ++AL GG T I P +
Sbjct: 62 GLLDTHVHV--SGGDYAPRQKTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAI 119
Query: 162 --KKAKNSCMDYGFHM---AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDEL 216
K+ + G + A+ + ++ M KE G+ G+ N E
Sbjct: 120 TLSKSYYNARPAGVKVHGGAVILEKGLTEEDFIEMKKE-GVWIVGEVG--LGTIK-NPED 175
Query: 217 LIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276
+ G +H G ++ + I +
Sbjct: 176 AAPMVEWAHKHGFKVQMHTG-GTSIPGSSTVTADDVIKTKPDVVSHINGGPTAISVQEVD 234
Query: 277 RLAEFVNTPLYVVHVMSMDAMEEI---AKARKAGQRVI-GEPVVSGLVLDDSWLWHSDFV 332
R+ + + + +V + + + A + RVI G SG L + +
Sbjct: 235 RIMDETDFAMEIVQCGNPKIADYVARRAAEKGQLGRVIFGNDAPSGTGLIPLGILRNMCQ 294
Query: 333 TAAKYVMSPPIRASGHNKALQAA 355
A+ + P A+ A
Sbjct: 295 IASMSDIDPE-------VAVCMA 310
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A Length = 608 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 1e-16
Identities = 68/469 (14%), Positives = 122/469 (26%), Gaps = 84/469 (17%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
+LI GGT+V+ ++ AD+ + ++ +V + D +V+DA G +V PG ID H
Sbjct: 37 VLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHM 96
Query: 113 HLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172
H+ S ++ A G TT+ D N G K +N +
Sbjct: 97 HI----ESSMITPAAYA-AAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAI 151
Query: 173 F---------HMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ + + ++ I M +G D + +
Sbjct: 152 LLAPSCVPSAPGLERGGADFDAAILADLLSWPEIGGIAEIMNMRGVIE-RDPRMSGIVQA 210
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
+ L H + G++ E + +A+
Sbjct: 211 GLAAEKLVCGH--ARGLKNADLNAFMAAGVSSDH------------ELVSGEDLMAKLRA 256
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+ + E A L T + +
Sbjct: 257 GLTIELRGSHDHLLPEFVAA---------------LNTLGHLPQTVTLCTDDVF-PDDLL 300
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403
+ G + ++ + G+ N+ Q G D I G
Sbjct: 301 QGGGLDDVVRRLVRYGLKPEWALRAATLNAAQ-RLGRSDLGLIAAGRRA----------- 348
Query: 404 MVESGQISVTDYVRLTSTECARIFNVY------PRKGAILVGSDADIIIFNPNS------ 451
D V +V G +LV S
Sbjct: 349 ----------DIVVFEDLNGFSARHVLASGRAVAEGGRMLVDIPTCDTTVLKGSMKLPLR 398
Query: 452 ---SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497
F + ++ RL T G+ E + G VV +
Sbjct: 399 MANDFLVKSQGAKVRLATIDRPRFTQWGETEADVKDGFVVPPEGATMIS 447
|
| >1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme, temperature depende structural changes, hydrolase; HET: KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1 c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A* 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C* 1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C* 1a5k_C ... Length = 567 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 2e-15
Identities = 61/419 (14%), Positives = 115/419 (27%), Gaps = 55/419 (13%)
Query: 46 QCGIQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKV 95
Q +++ +V+ AD+ V+DG + A+ N +G +V
Sbjct: 59 QMLAADCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEV 118
Query: 96 LDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTA 155
+ A GK V GGID H H E SG + GGT
Sbjct: 119 IAAEGKIVTAGGIDTHIHWICPQQAEE---ALVSGVTTMVGGGTGPAAGTHATTCTPGPW 175
Query: 156 GFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDE 215
+ A + ++ G E G+ K + + D
Sbjct: 176 YISRMLQAADSLPVNIGLLGKGNVSQPDALREQV----AAGVIGLKIHEDWGATPAAID- 230
Query: 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275
+ +H++ + + + + G EG A
Sbjct: 231 ---CALTVADEMDIQVALHSDTLNESGFVEDTLAAI------GGRTIHTFHTEGAGGGHA 281
Query: 276 IRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335
+ P + + + + ++ + + +D
Sbjct: 282 PDIITACAHPNILPSSTNPTLPYTLNTIDEHLDMLMVCHHLDPDIAED------------ 329
Query: 336 KYVMSPPIRASGHNKALQAALA-TGILQLVGTDHCAFN----STQKAFGIDDFRKIPNGV 390
V R A + L G L +D A + + + K+ G
Sbjct: 330 --VAFAESRIRRETIAAEDVLHDLGAFSLTSSDSQAMGRVGEVILRTWQVAHRMKVQRGA 387
Query: 391 NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 449
E + V Y+ + A + G+I VG AD+++++P
Sbjct: 388 LAEETGDN---------DNFRVKRYIAKYTINPALTHGIAHEVGSIEVGKLADLVVWSP 437
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3mkv_A* Length = 426 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + L + G +++ H + ++ +EDG + V + V+D GK +MPG
Sbjct: 2 SLTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGL 61
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALA 136
ID H H+ + + A
Sbjct: 62 IDLHVHVVAIEFNLPRVATLPNVLVTLRA 90
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A Length = 430 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 6e-13
Identities = 67/475 (14%), Positives = 130/475 (27%), Gaps = 99/475 (20%)
Query: 49 IQSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGG 107
+ +++ I + + + ++++DG + A+ V LDA V+P
Sbjct: 4 MANNALQTIINARL--PGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPF 61
Query: 108 IDPHTHLAMEFMGSE-----------------------TIDDFFSGQAAAL----AGGTT 140
++PH HL + T DD L A G
Sbjct: 62 VEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQ 121
Query: 141 M---HIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGI 197
H+D +L A E ++ A + + + G
Sbjct: 122 HVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGA 181
Query: 198 NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-ENGDAVFEGQKRMIELGITGP 256
+ ++ + E L + F + L VH E D + + L
Sbjct: 182 DVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVETVAALAHHEG 241
Query: 257 EGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316
G + H +M + R++ +
Sbjct: 242 MGA-------------------------RVTASHTTAMHSYNG--AYTSRLFRLLKMSGI 274
Query: 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQK 376
+ + + ++ P R K + + GI G D
Sbjct: 275 NFVANPLVNIHL-----QGRFDTYPKRRGITRVKEMLES---GINVCFGHDGVFDPWY-- 324
Query: 377 AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAI 436
P G + + +H+ G + D + L + AR N+ + I
Sbjct: 325 ----------PLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNL--QDYGI 372
Query: 437 LVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
G+ A++II + F+ R R ++ GG+V+
Sbjct: 373 AAGNSANLIILPAENGFDALRRQVPVR----------------YSVRGGKVIAST 411
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 Length = 418 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 52 SSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGG 107
SK LI G +++ Q+ + ++ I+ ++ I+ D +D V+PG
Sbjct: 6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPGL 65
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGF 157
+D H H E+ + A+ ++ + +GF
Sbjct: 66 MDMHVHFGQEYQSKAQAPIKVEREMQAILATQHAYV--------TFKSGF 107
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* Length = 423 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 51 SSSKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107
S + +++GG V++ + V ++ +V V + + +D GK VMPG
Sbjct: 2 SLTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGF 61
Query: 108 IDPHTHLAME 117
ID H H+
Sbjct: 62 IDCHVHVLAS 71
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} Length = 403 | Back alignment and structure |
|---|
Score = 66.9 bits (163), Expect = 4e-12
Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
++I+ + + + D+ + ++ ++ I G +DA G V PG +D HTH+
Sbjct: 7 LIIRNAYL--SEKDSVYDIGIVGDRIIKIEAKIE-GTVKDEIDAKGNLVSPGFVDAHTHM 63
Query: 115 AMEFMGSETIDDFFSGQAAALAGG 138
F + F +
Sbjct: 64 DKSFTSTGERLPKFWSRPYTRDAA 87
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* Length = 456 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 55 ILIKGGTVV---NAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
ILI+G T V + +++ AD+ ++ +VAV +++ + +D G +PG I+
Sbjct: 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLIN 61
Query: 110 PHTHLAMEFM-GSETIDD 126
H HL M ++
Sbjct: 62 SHQHLYEGAMRAIPQLER 79
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* Length = 408 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 51 SSSKILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
+S LIK ++ +I AD+ + +G + + D V+ ++PG +
Sbjct: 4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLM 61
Query: 109 DPHTHLAME 117
D H H+
Sbjct: 62 DSHVHIVGN 70
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A Length = 406 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++I ++ + V +E+G + V G+ LD +GK VMP + HT
Sbjct: 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQ----GEVKVDLDLSGKLVMPALFNTHT 56
Query: 113 HLAMEFM 119
H M +
Sbjct: 57 HAPMTLL 63
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 Length = 492 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 11/86 (12%)
Query: 51 SSSKILIKGGTVVNAHHQQI---------ADVYVEDGIVVAVQPNINVGDDVKVLDATGK 101
+ LI+ + + D+ + + A+ + ++DAT
Sbjct: 8 TQPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAPRPGE-TIVDATDC 66
Query: 102 FVMPGGIDPHTHLAMEFM-GSETIDD 126
+ P ++ H HL + G D
Sbjct: 67 VIYPAWVNTHHHLFQSLLKGEPAGLD 92
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* Length = 447 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 50 QSSSKILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINVG--DDVKVLDATGKFV 103
QS + +I ++ + + + + + DG + A+ P + + + L+ +
Sbjct: 3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVL 62
Query: 104 MPGGIDPHTHLAMEFM 119
MPG I+ H H AM +
Sbjct: 63 MPGLINLHGHSAMSLL 78
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} Length = 451 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 55 ILIKGGTVV--NAHHQQI--ADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVMPGGI 108
+L+ +V + + + DG + V P ++ + G + PG +
Sbjct: 10 LLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLV 69
Query: 109 DPHTHLAM 116
+ H H AM
Sbjct: 70 NAHGHSAM 77
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} Length = 472 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 55 ILIKGGTVV--NAHHQQIAD--VYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGG 107
+LI+ G VV H + D V V +G++VAV P + + + +MPG
Sbjct: 16 LLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGL 75
Query: 108 IDPHTHLAMEFM 119
++ HTH M +
Sbjct: 76 VNAHTHNPMTLL 87
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
I GG +++ ++ AD+ V DG + A+ DA+GK V PG ID H
Sbjct: 9 FKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHPAR-HAWDASGKIVAPGFIDVHG 67
Query: 113 H 113
H
Sbjct: 68 H 68
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* Length = 480 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 11/94 (11%)
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
E+ +++ V + AR+F +G + G+ AD+++F+P+ + R+
Sbjct: 391 EARLMTLEQAVARMTALPARVFGF-AERGVLQPGAWADVVVFDPD---TVADRATWDEPT 446
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPG 499
G + + G V+ + PG
Sbjct: 447 ------LASVG-IAGVLVNGAEVFPQPPADGRPG 473
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} Length = 468 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 31 SNNLFCDAGSEYGGPQCGIQSSSKILIKGGTVV--------NAHHQQIAD--VYVEDGIV 80
SN + D+ S Q ++ + + I ++ N + D + ++DGI+
Sbjct: 1 SNAMSKDSESNLAQRQSQPKAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGII 60
Query: 81 VAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAM 116
+A++P + + LD + +MPG ++ H H AM
Sbjct: 61 LAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAM 97
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 3e-09
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 55 ILIKGGTVVN--AHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHT 112
++ GGTV++ ++ADV V + AV ++ D GK V PG ID HT
Sbjct: 23 YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRI-DVAGKVVSPGFIDSHT 81
Query: 113 H 113
H
Sbjct: 82 H 82
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A Length = 496 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 2e-04
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD 465
+ G + V + A F + +G + G AD+++F+P + +
Sbjct: 405 DLGLFPLETAVWKMTGLTAAKFGL-AERGQVQPGYYADLVVFDPA---TVADSATFEHPT 460
Query: 466 TNVYEGRRVKGKVEVTIAGGRVVWENDEL-NVVPG 499
R G + G VWE+ G
Sbjct: 461 ------ERAAG-IHSVYVNGAAVWEDQSFTGQHAG 488
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A Length = 419 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-09
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 51 SSSKILIKGGTVV--NAHHQQI-----ADVYVEDGIVVAVQPNINV----GDDVKVLDAT 99
++ L + + N I A + V +G + P ++ + D
Sbjct: 13 GNATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCG 72
Query: 100 GKFVMPGGIDPHTHLAM 116
G+++ P ID HTHL
Sbjct: 73 GRWITPALIDCHTHLVF 89
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 6e-09
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 51 SSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
S++ + + + + V + + AV P ++ ++ V+D G + PG ID
Sbjct: 1 SNAMYALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFID 60
Query: 110 PHTHLAM--EFMGSETIDDFFSGQAAALAGGTT 140
+ F T + + A L G T
Sbjct: 61 LQLNGCGGVMFNDEITAETIDTMHKANLKSGCT 93
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* Length = 381 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450
VE I++ + +R+ + A+ V + G I G A++ +F+ +
Sbjct: 319 NTVEHVGIALDEALRMATLYPAKAIGVDEKLGRIKKGMIANLTVFDRD 366
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 Length = 458 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 52 SSKILIKGGTVVNAH-----HQQIADVYVEDGIVVAVQPN--INVGDDVKVLDATGKFVM 104
+ T+V + + V DG + V P+ ++ + LD TGK VM
Sbjct: 11 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVM 70
Query: 105 PGGIDPHTHLAME 117
PG I+ HTHL +
Sbjct: 71 PGLINAHTHLFSQ 83
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A Length = 421 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-08
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 71 ADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAM 116
A V + + +V + +++D +G+ V PG +DPHTHL
Sbjct: 38 AVVGIHEQKIVFAGQKGAEAGYEADEIIDCSGRLVTPGLVDPHTHLVF 85
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* Length = 416 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 52 SSKILIKGGTVV-----NAHHQQI--ADVYVEDGIVVAVQP--NINVGDDVKVLDATGKF 102
+ + + T A + + + V +G + A+ P ++ D GK
Sbjct: 4 NCERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKL 63
Query: 103 VMPGGIDPHTHLAM 116
V PG ID HTHL
Sbjct: 64 VTPGLIDCHTHLIF 77
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 57 IKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH-- 113
+ G + H V + DG++ +V P + +++ G + PG ID +
Sbjct: 4 LTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGC 63
Query: 114 ---LAMEFMGSETIDDFFSGQAAALAGGTT 140
+ + +++ Q A G T
Sbjct: 64 GGVQFNDTAEAVSVETLEIMQKANEKSGCT 93
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* Length = 382 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 4e-05
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450
+VE I++ + +R+ + AR V R G + G A++ F P+
Sbjct: 319 NLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPD 366
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 Length = 439 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 49 IQSSSKILIKGGTVVNAHHQQI-----ADVYVEDGIVVAVQPNINVG-DDVKVLDATGKF 102
+ + + KG + + + + V DG + +V N+ ++D
Sbjct: 5 EKDINLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNI 64
Query: 103 VMPGGIDPHTHLAM 116
++PG D H H +
Sbjct: 65 IIPGMNDLHAHASQ 78
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 Length = 420 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 39/298 (13%), Positives = 84/298 (28%), Gaps = 56/298 (18%)
Query: 56 LIKGGTVVNAHHQQIAD--VYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPH 111
L+ + + V V V A + + G + P ++ H
Sbjct: 40 LLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAGAVIAPPPVNAH 99
Query: 112 THLAM--------EFMG--------SETIDDFFSGQAAA---LAGGTTMHIDFV------ 146
THL M + + + QA A G D V
Sbjct: 100 THLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWAPEVM 159
Query: 147 ------IPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSF 200
++G+L + + +W + + + + ++
Sbjct: 160 DALLAREDLSGTLYFEVLNPFPDKADEVFAAA-RTHLERWRRLERPGLRLGL---SPHT- 214
Query: 201 KFFMAYKGSFMINDELLIEGFKRCKSLGALAMVH-AENGD---AVFEGQKRMIELGITGP 256
F ++ L+ G +H AE+ G + + +
Sbjct: 215 --------PFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRTGGGPLWDNRMPAL 266
Query: 257 EGHALSRPPLLEGEATTRAIRLAE---FVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311
H L+ E +R + + +VH++++ ++IA+ +AG V+
Sbjct: 267 YPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLVHMVNVTP-DDIARVARAGCAVV 323
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQP-NINVGDDVKVLDATGKFVMPGGID 109
+ +LIK +V + + V + DG + V ++ ++PG ID
Sbjct: 2 AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMID 61
Query: 110 PHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
H H + ++ L GTT
Sbjct: 62 IHIHGGYGADTMDASFSTLDIMSSRLPEEGTT 93
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} Length = 396 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 25/93 (26%)
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHS 462
M E S TD +TS A+ ++ RKG++ VG DAD++I + +
Sbjct: 327 HMREFTNCSWTDIANITSENAAKQLGIFDRKGSVTVGKDADLVIVSSD------------ 374
Query: 463 RLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495
+V +TI G + + + E +
Sbjct: 375 -------------CEVILTICRGNIAFISKEAD 394
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} Length = 81 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 55 ILIKGGTV--VNAHHQQIADVYVEDGIVVAV---QPNINVGDDVKVLDATGKFVMPGGID 109
+++ G + ++ +++ + + DG++ AV + + + K +D K +PG D
Sbjct: 6 MILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLND 65
Query: 110 PHTHL 114
H H+
Sbjct: 66 SHIHV 70
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* Length = 534 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 14/111 (12%)
Query: 13 LTSVALLLLLLYFPPISESNNLFCDAGSEYGGPQCGIQSSSKILIKGGTV--VNAHHQQI 70
L S+ + + + + G + GT+ + +++
Sbjct: 3 LASLPISNFFTFNHQSTLFTKVKNFMG-------VKHIGDCMKALINGTIYTSFSPVKKV 55
Query: 71 ADVYVEDGIVVAV-----QPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116
+ + + + V+ I +++D GKFVMP D H HL
Sbjct: 56 SGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDE 106
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} Length = 427 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 55 ILIKGGTVVNAHHQQIADVYV-EDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDP 110
+IK ++ I D V D + A+ N+ + V ++PG +P
Sbjct: 2 RIIKPFAILTPQ-TIIQDKAVAFDKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANP 60
Query: 111 HTHLAM 116
H HL
Sbjct: 61 HLHLEF 66
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 Length = 475 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 71 ADVYVEDGIVVAVQPNINVGD---DVKVLDATGKFVMPGGIDPHTHLAM-EFMGS 121
+ V DG++ A P + V++ + ++PG ID H HL +G+
Sbjct: 36 GLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLPQTRVLGA 90
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} Length = 458 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 71 ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119
+ + G++ +++ + G D D V+ G + H+H M
Sbjct: 29 VRIGIAGGVICSIETGVLAGPD----DERQSVVVAGMANLHSHAFQYGM 73
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 Length = 376 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 50 QSSSKILIKGGTVVNAHHQQI-ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI 108
++++ +V+ + DV +E+G +V V+ +MPG +
Sbjct: 8 HHHHHMIVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRE---------CIPRGVLMPGFV 58
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAG-GTT 140
DPH H +G++T++ FS L G T
Sbjct: 59 DPHIHGV---VGADTMNCDFSEMEEFLYSQGVT 88
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* Length = 453 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115
L+ G N DG++ ++P + + G V+PG + H+H
Sbjct: 10 LLPEGWARNV-----RFEISADGVLAEIRP----DANADGAERLGGAVLPGMPNLHSHAF 60
Query: 116 MEFM 119
M
Sbjct: 61 QRAM 64
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| 3dc8_A | 490 | Dihydropyrimidinase; TIM-barrel, hydrolase; HET: K | 100.0 | |
| 3sfw_A | 461 | Dihydropyrimidinase; hydrolase, zinc binding; HET: | 100.0 | |
| 2ftw_A | 521 | Dihydropyrimidine amidohydrolase; (beta-alpha)8-ba | 100.0 | |
| 1gkp_A | 458 | Hydantoinase; hydrolase, dihydropyrimidinase, cycl | 100.0 | |
| 2fty_A | 559 | Dihydropyrimidinase; alpha/beta barrel, beta-sandw | 100.0 | |
| 2vr2_A | 541 | Dihydropyrimidinase; hydantoinase, metal-binding, | 100.0 | |
| 3e74_A | 473 | Allantoinase; (beta/alpha)8-barrel domain, small b | 100.0 | |
| 2vm8_A | 501 | Dihydropyrimidinase-related protein 2; neurogenesi | 100.0 | |
| 1nfg_A | 457 | D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2 | 100.0 | |
| 1gkr_A | 458 | Hydantoinase, non-ATP dependent L-selective hydant | 100.0 | |
| 3hm7_A | 448 | Allantoinase; metallo-dependent hydrolase, protein | 100.0 | |
| 3gri_A | 424 | Dihydroorotase, dhoase; hydrolase, IDP00795, metal | 100.0 | |
| 3mpg_A | 428 | Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus | 100.0 | |
| 2gwn_A | 452 | Dihydroorotase; zinc-binding prote structural geno | 100.0 | |
| 2z00_A | 426 | Dihydroorotase; zinc binding protein, hydrolase, m | 100.0 | |
| 1xrt_A | 467 | Dihydroorotase, dhoase; amidohydrolase, metalloenz | 100.0 | |
| 4f0r_A | 447 | 5-methylthioadenosine/S-adenosylhomocysteine DEAM; | 100.0 | |
| 3lnp_A | 468 | Amidohydrolase family protein OLEI01672_1_465; TIM | 100.0 | |
| 3h4u_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 4dyk_A | 451 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 4dzh_A | 472 | Amidohydrolase; adenosine deaminase, nysgrc, struc | 100.0 | |
| 3gnh_A | 403 | L-lysine, L-arginine carboxypeptidase CC2672; N-me | 100.0 | |
| 3feq_A | 423 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 2r8c_A | 426 | Putative amidohydrolase; unknown source, sargasso | 100.0 | |
| 3ls9_A | 456 | Triazine hydrolase; atrazine chlorohydrolase TRZN; | 100.0 | |
| 3gip_A | 480 | N-acyl-D-glutamate deacylase; amidohydrolase famil | 100.0 | |
| 2paj_A | 492 | Putative cytosine/guanine deaminase; NYSGXRC, PSI- | 100.0 | |
| 2ood_A | 475 | BLR3880 protein; PSI-II, PSI-2, guanine deaminase, | 100.0 | |
| 3be7_A | 408 | Zn-dependent arginine carboxypeptidase; unknown so | 100.0 | |
| 2qt3_A | 403 | N-isopropylammelide isopropyl amidohydrolase; N-is | 100.0 | |
| 2p9b_A | 458 | Possible prolidase; protein structure initiative I | 100.0 | |
| 2i9u_A | 439 | Cytosine/guanine deaminase related protein; protei | 100.0 | |
| 1rk6_A | 496 | D-aminoacylase; TIM barrel, beta barrel, insertion | 100.0 | |
| 2bb0_A | 421 | Imidazolonepropionase; TIM barrel, hydrolase; 2.00 | 100.0 | |
| 2qs8_A | 418 | XAA-Pro dipeptidase; amidohydrolase, TIM barrel, p | 100.0 | |
| 3hpa_A | 479 | Amidohydrolase; signature of Zn ligands, structura | 100.0 | |
| 4aql_A | 476 | Guanine deaminase; hydrolase, purine metabolism; H | 100.0 | |
| 2q09_A | 416 | Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dio | 100.0 | |
| 2ogj_A | 417 | Dihydroorotase; TIM barrel, binuclear zinc, imidaz | 100.0 | |
| 1ra0_A | 430 | Cytosine deaminase; alpha-beta barrel, hexamer, co | 100.0 | |
| 2ics_A | 379 | Adenine deaminase; TIM barrel, binuclear zinc, ade | 100.0 | |
| 1p1m_A | 406 | Hypothetical protein TM0936; putative metal depend | 100.0 | |
| 2puz_A | 419 | Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino | 100.0 | |
| 2vun_A | 386 | Enamidase; nicotinate degradation, binuclear metal | 100.0 | |
| 1e9y_B | 569 | Urease subunit beta; hydrolase, dodecamer; HET: KC | 100.0 | |
| 3v7p_A | 427 | Amidohydrolase family protein; iron binding site, | 100.0 | |
| 3pnu_A | 359 | Dihydroorotase; TIM barrel, zinc binding, hydrolas | 100.0 | |
| 4f0l_A | 458 | Amidohydrolase; ssgcid, structural genomics, seatt | 100.0 | |
| 3ooq_A | 396 | Amidohydrolase; structural genomics, protein struc | 100.0 | |
| 3nqb_A | 608 | Adenine deaminase 2; PSI-II, structural genomics, | 100.0 | |
| 4ac7_C | 570 | Urease subunit alpha; hydrolase, bacillus pasteuri | 100.0 | |
| 4ubp_C | 570 | Protein (urease (chain C)); bacillus pasteurii, ni | 100.0 | |
| 2vhl_A | 396 | N-acetylglucosamine-6-phosphate deacetylase; N- ac | 100.0 | |
| 3iv8_A | 381 | N-acetylglucosamine-6-phosphate deacetylase; IDP01 | 100.0 | |
| 3mdu_A | 453 | N-formimino-L-glutamate iminohydrolase; amonohydra | 100.0 | |
| 1yrr_A | 382 | N-acetylglucosamine-6-phosphate deacetylase; (beta | 100.0 | |
| 4gy7_A | 840 | Urease; JACK bean, hydrolase, ME binding, nickel; | 100.0 | |
| 1onw_A | 390 | Isoaspartyl dipeptidase; amidohydrolase, hydrolase | 100.0 | |
| 3icj_A | 534 | Uncharacterized metal-dependent hydrolase; structu | 100.0 | |
| 2imr_A | 420 | Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, | 100.0 | |
| 2z26_A | 347 | Dihydroorotase, dhoase; TIM barrel, hydrolase; HET | 99.98 | |
| 3mtw_A | 403 | L-arginine carboxypeptidase CC2672; hydrolase; HET | 99.97 | |
| 4ep8_C | 566 | Urease subunit alpha; alpha-beta barrel, nickel me | 99.97 | |
| 3mkv_A | 426 | Putative amidohydrolase; sargasso SEA, structural | 99.97 | |
| 1o12_A | 376 | N-acetylglucosamine-6-phosphate deacetylase; struc | 99.95 | |
| 3ggm_A | 81 | Uncharacterized protein BT9727_2919; bacillus cere | 99.56 | |
| 1bf6_A | 291 | Phosphotriesterase homology protein; hypothetical | 99.23 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 99.19 | |
| 1zzm_A | 259 | Putative deoxyribonuclease YJJV; hydrolaze, zinc, | 99.07 | |
| 2vc7_A | 314 | Aryldialkylphosphatase; phosphotriesterase, promis | 98.99 | |
| 3rcm_A | 287 | TATD family hydrolase; HET: CIT; 2.05A {Pseudomona | 98.96 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 98.91 | |
| 2y1h_A | 272 | Putative deoxyribonuclease tatdn3; hydrolase; 2.50 | 98.86 | |
| 1xwy_A | 264 | DNAse TATD, deoxyribonuclease TATD; TIM barrael, z | 98.83 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 98.77 | |
| 2pgf_A | 371 | Adenosine deaminase; metallo-dependent hydrolase, | 98.7 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 98.69 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 98.69 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 98.66 | |
| 1yix_A | 265 | Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW | 98.63 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 98.63 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 98.59 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 98.54 | |
| 3gg7_A | 254 | Uncharacterized metalloprotein; structural genomic | 98.5 | |
| 3ipw_A | 325 | Hydrolase TATD family protein; niaid, ssgcid, seat | 98.49 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 98.43 | |
| 4i6k_A | 294 | Amidohydrolase family protein; enzyme function ini | 98.38 | |
| 2xio_A | 301 | Putative deoxyribonuclease tatdn1; hydrolase; 1.19 | 98.35 | |
| 2gzx_A | 265 | Putative TATD related DNAse; deoxyribonuclease, NE | 98.34 | |
| 1j6o_A | 268 | TATD-related deoxyribonuclease; structural genomic | 98.34 | |
| 3cjp_A | 272 | Predicted amidohydrolase, dihydroorotase family; s | 98.13 | |
| 2ffi_A | 288 | 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; | 98.11 | |
| 2dvt_A | 327 | Thermophilic reversible gamma-resorcylate decarbo; | 98.09 | |
| 2f6k_A | 307 | Metal-dependent hydrolase; metal dependent hydroly | 97.85 | |
| 3guw_A | 261 | Uncharacterized protein AF_1765; alpha-beta protei | 97.77 | |
| 4d9a_A | 303 | 2-pyrone-4,6-dicarbaxylate hydrolase; structural g | 97.72 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 97.54 | |
| 3e2v_A | 401 | 3'-5'-exonuclease; structural genomics, hydrolase, | 97.49 | |
| 3irs_A | 291 | Uncharacterized protein BB4693; structural genomic | 97.47 | |
| 4do7_A | 303 | Amidohydrolase 2; enzyme function initiative, EFI, | 97.36 | |
| 2a3l_A | 701 | AMP deaminase, AMPD; atampd, AT2G38280, adenosine | 97.09 | |
| 3lgd_A | 508 | Adenosine deaminase CECR1; TIM barrel, dimerizatio | 96.7 | |
| 3ij6_A | 312 | Uncharacterized metal-dependent hydrolase; structu | 96.69 | |
| 3nur_A | 357 | Amidohydrolase; TIM barrel; 1.75A {Staphylococcus | 96.1 | |
| 3qy7_A | 262 | Tyrosine-protein phosphatase YWQE; TIM barrel, pol | 94.43 | |
| 2wm1_A | 336 | 2-amino-3-carboxymuconate-6-semialdehyde decarboxy | 93.5 | |
| 4inf_A | 373 | Metal-dependent hydrolase; amidohydrolase, metal b | 93.31 | |
| 2hbv_A | 334 | 2-amino-3-carboxymuconate 6-semialdehyde decarbox; | 92.73 |
| >3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-62 Score=510.73 Aligned_cols=463 Identities=48% Similarity=0.826 Sum_probs=417.1
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (538)
+++|+|++|+++++..+++|+|+||+|++|++... +.++||++|++|+|||||+|+|+..+..+..+.+++....+.
T Consensus 2 ~~~i~~~~v~~~~~~~~~~v~I~~G~I~~i~~~~~---~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~a 78 (490)
T 3dc8_A 2 STVIKGGTIVTADLTYKADVKVEGGRIVEIGPNLS---GAETLDATGCYVMPGGIDPHTHLEMPFMGTYSSDDFESGTRA 78 (490)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEESSCC---CSEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHH
T ss_pred cEEEEccEEECCCCceeeeEEEECCEEEEeccCCC---CCeEEECCCCEEecCEEeeccccCCCCCCCCCHHHHHHHHHH
Confidence 58999999999988788999999999999998653 578999999999999999999998874444688899999999
Q ss_pred HHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccC
Q 009282 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (538)
Q Consensus 134 ~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (538)
++++||||++++....+. ...+.++.+.....+..++++++......+++.+.++.++.++.|+..+|+|+++.+....
T Consensus 79 a~~~GvTtv~~~~~~~p~~~~~~~~~~~~~~a~~~~~d~~~~~~~~~~~~~~l~el~~l~~~~G~~~~k~~~~~~~~~~~ 158 (490)
T 3dc8_A 79 ALAGGTTMVVDFALPSPGQSLLEALTMWDNKSTRANCDYSFHMAITWWGEQVFNEMETIVKDKGINTFKHFMAYKGALMV 158 (490)
T ss_dssp HHHTTEEEEEEEECCC-CCCHHHHHHHHHHHTTTCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESCSTTTTBC
T ss_pred HHHcCEEeecccCCCCCCcCHHHHHHHHHHHhhcccceeeeEEEEecCcHHHHHHHHHHHHhCCCCEEEEEecCCCCccC
Confidence 999999999998654433 5677777777766677788888887777777778888888767899999999998888888
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc
Q 009282 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (538)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~ 292 (538)
+.+.++++++.|+++|.++.+|+++...+......+...|...+..|...+|...+.+.+.+++.++...+.++|+.|++
T Consensus 159 ~~~~l~~~~~~a~~~g~~v~~HaE~~~~i~~~~~~~~~~g~~~~~~~~~~rP~~~E~~av~r~i~la~~~g~~lhi~HvS 238 (490)
T 3dc8_A 159 DDDEMFSSFQRCAALGALPLVHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTS 238 (490)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSHHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEESSCC
T ss_pred CHHHHHHHHHHHHhcCCEEEEecCChHHHHHHHHHHHhcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCC
Confidence 99999999999999999999999998877777777888899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCC
Q 009282 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (538)
Q Consensus 293 ~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~ 372 (538)
+....+.++.+++.|+.|++++++|++.++++.+...+|..+..++++||+|...+++.++++++.|...+++|||.|++
T Consensus 239 t~~~~~li~~ak~~G~~Vt~e~~ph~l~l~~~~~~~~~~~~~~~~~~~Pplr~~~d~~aL~~~l~~G~id~i~sDh~p~~ 318 (490)
T 3dc8_A 239 CEQAHEAIRRARAKGMRVFGEPLIQHLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFT 318 (490)
T ss_dssp SHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSCHHHHHHTCCSSCCCCGGGHHHHHHHHHHTSSCCCBCCBCCCC
T ss_pred CHHHHHHHHHHHHCCCeEEEEEchHHheeCHHHhcCcCcccCCceEECCCCCChHHHHHHHHHHhcCCceEEECCCCCCC
Confidence 99999999999999999999999999999999887655443578999999999999999999999999999999999999
Q ss_pred hhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCc
Q 009282 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 452 (538)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~ 452 (538)
...+..+.++|..+|+|++|++..++..+..++..+++|++++++++|.|||+++|+++++|+|++|+.|||||||++..
T Consensus 319 ~~~K~~g~~~f~~~~~G~~gle~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~l~~G~~ADlvv~d~~~~ 398 (490)
T 3dc8_A 319 TEQKRFGVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILVGADADLVVWDPKRS 398 (490)
T ss_dssp HHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEEEEEE
T ss_pred HHHhhccCCChhhCCCChHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCCCCccCCCCcCCEEEEecCcc
Confidence 99888777799999999999999999999877888999999999999999999999988899999999999999999999
Q ss_pred eeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCccccccchhh
Q 009282 453 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKA 519 (538)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (538)
+.++.+++.++..++||+|..+.++|..||++|++||++|+++...+.|+++++.+++..+++..++
T Consensus 399 ~~i~~~~~~s~~~~sp~~g~~~~g~v~~t~~~G~~v~~~g~~~~~~~~G~~~~~~~~~~~~~~~~~~ 465 (490)
T 3dc8_A 399 KTISAKTQQSAIDYNVFEGKTVTGLPRFTLTRGVVSIEEGTVKTQEGHGEFVRRDPFPAVSTALSTW 465 (490)
T ss_dssp EECCTTTCSSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCSCCHHHHHHHHH
T ss_pred eEechhhccccCCCCcccCcEEeeEEEEEEECCEEEEECCEEcccCCCceeccCCCCcchhHHHHHH
Confidence 9999999999999999999999999999999999999999999988899999999888755544443
|
| >3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A {Brevibacillus agri} PDB: 1yny_A 1k1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-59 Score=489.18 Aligned_cols=454 Identities=44% Similarity=0.719 Sum_probs=402.1
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (538)
+++|+|++|++++...+++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+..++.+....+++....+.
T Consensus 2 ~~~i~n~~v~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~~~~~e~~~~~~~~ 80 (461)
T 3sfw_A 2 KKWIRNGTVVTASDTYQADVLIDGEKVVAIGSDLQ-ATDAEVIDATGYYLLPGGIDPHTHLDMPFGGTVTSDNFFTGTKA 80 (461)
T ss_dssp EEEEESCEEECSSCEEECEEEEETTEEEEEESCCC-CSSCEEEECTTCEEEECEEEEEECTTCEETTEECSCCHHHHHHH
T ss_pred cEEEECeEEECCCCcEEEEEEEECCEEEEEeCCCC-CCCCeEEECCCCEEEeeeEEeEeccCcCCCCcccHhHHHHHHHH
Confidence 58999999999887788999999999999998653 34689999999999999999999998765555677888888999
Q ss_pred HHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc
Q 009282 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (538)
Q Consensus 134 ~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (538)
++++||||++++...... ...+.++...... ....++++++.......++.++++.++.++.|+..+|+++++++.+.
T Consensus 81 ~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~ik~~~~~~~~~~ 160 (461)
T 3sfw_A 81 AAFGGTTSIVDFCLTSKGESLHSAIATWHEKARGKAVIDYGFHLMVSDANDHVLEELESVVNNEGITSLKVFMAYKNVLM 160 (461)
T ss_dssp HHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHHHHHHHHHHHHTSCCCEEEEESSSTTTTB
T ss_pred HHhCCEEEEEccCCCCCcchHHHHHHHHHHHhhcCcEEEEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEEecCCCcc
Confidence 999999999998654333 5666666665554 34677888877766667778889999883389999999999887778
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
.+.+.+.++++.|+++|+++.+|+++...+....+.+...|...+..|...+|...+.+++.+++.++...+.++|+.|+
T Consensus 161 ~~~~~l~~~~~~a~~~g~~v~~Hae~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~e~~av~~~~~la~~~g~~~hi~H~ 240 (461)
T 3sfw_A 161 ADDETLFKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALADAQLYVVHV 240 (461)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHTTCEEEECSC
T ss_pred cCHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhHhcccCCHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 89999999999999999999999999888877777788889888888999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 292 ~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
+....++.++.+++.|+.|+++.++|++++.++.+....+ .+..++++||+|...+++.++++++.|+.++++||+.|+
T Consensus 241 s~~~~l~~i~~ak~~G~~vt~e~~ph~l~l~~~~~~~~~~-~~~~~~~~Pplr~~~~~~aL~~~l~~G~~~~i~sD~~p~ 319 (461)
T 3sfw_A 241 SCADAVRRIAEAREKGWNVYGETCPQYLVLDITALEKPDF-EGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPF 319 (461)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECHHHHHCCGGGGGCTTT-GGGGGCCSSCCCCTHHHHHHHHHHHTTSSCEECCCBCCC
T ss_pred CcHHHHHHHHHHHhcCCcEEEeeccceEEEcHHHhcCccc-cCCcEEEcCCCCChHHHHHHHHHHhcCCceEEECCCCCC
Confidence 9999899999999999999999999999999988765433 247789999999999999999999999999999999999
Q ss_pred Chh-hhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCC
Q 009282 372 NST-QKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450 (538)
Q Consensus 372 ~~~-~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~ 450 (538)
+.. .+..+.++|..+|+|++|++..+...+++++..+++|++++++++|.|||+++|+++++|+|++|+.|||||+|.+
T Consensus 320 ~~~~~k~~~~~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~~~~G~l~~G~~Ad~~~~d~~ 399 (461)
T 3sfw_A 320 NFSGQKELGRRDFTKIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADIVLFDPT 399 (461)
T ss_dssp CTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSSCSTTSBCCEEEEEEE
T ss_pred CchhhhhcccCCHhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHcCCCCCCCccCCCCcCCEEEEcCC
Confidence 843 3434446899999999999999999998788888899999999999999999999888999999999999999999
Q ss_pred CceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCC
Q 009282 451 SSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 509 (538)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~ 509 (538)
.++.++.+++.+...++||+|..+.++|..||++|++||++|+++...+.|+++++.++
T Consensus 400 ~~~~~~~~~~~~~~~~sp~~g~~~~~~v~~t~v~G~~v~~~g~~~~~~~~G~~~~~~~~ 458 (461)
T 3sfw_A 400 VQRTISVETHHMNVDYNPFEGMQVHGDVISVLSRGAFVVRNKQFVGHAGAGRYVKRSTF 458 (461)
T ss_dssp EEEECCTTTCCSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCCC
T ss_pred CCEEEchHHcccccCCCCCCCCEecceEEEEEECCEEEEECCeeccCCCCceEecCCCC
Confidence 99999999999999999999999999999999999999999999998878999997764
|
| >2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel, beta-sandwich; HET: KCX; 2.05A {Dictyostelium discoideum} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-58 Score=481.33 Aligned_cols=473 Identities=52% Similarity=0.879 Sum_probs=404.2
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
.++++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..++.+..+.++++...
T Consensus 7 ~~~~lI~n~~vv~~~~~~~~~V~I~dG~I~~Ig~~~~~~~~~~vIDa~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~ 86 (521)
T 2ftw_A 7 TGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLPGGIDTHTHFQLPFMGTVSVDDFDIGT 86 (521)
T ss_dssp CCCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCSSCCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHH
T ss_pred cCCEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEeeecccCcCCCCccCHHHHHHHH
Confidence 45799999999998877789999999999999986543445789999999999999999999987644445677888888
Q ss_pred HHHHhCCcEEEecccCCCC-CCHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCC
Q 009282 132 AAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (538)
+.++++||||++++..+.. ....+.++...... ....++++++.....++.+..+++.++.++.|+..+|+++.+++.
T Consensus 87 ~~a~~~G~Ttv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~l~~l~~~~G~~~~k~~~~~~~~ 166 (521)
T 2ftw_A 87 QAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNS 166 (521)
T ss_dssp HHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCHHHHHHHHHHHHHSCCCEEEEESSCTTT
T ss_pred HHHHhCCcceecCcCCCCCCcCHHHHHHHHHHHhhcCceeeEeeEEeecCCChhHHHHHHHHHHhCCCCEEEEEeccCCC
Confidence 9999999999999865432 24556666555443 235567777776666666667788887766899999999888777
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
...+.+.++++++.|+++|+++.+|+++.......++.+.+.|+.++.+|...+|...+..++.+++.++...+.++++.
T Consensus 167 ~~~~~e~l~~~~~~A~~~g~~v~vH~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p~hi~ 246 (521)
T 2ftw_A 167 FMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSVCTPVYIV 246 (521)
T ss_dssp TBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHHSCTHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccCcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 78899999999999999999999999987666677888899999999999988998888888889999999999999999
Q ss_pred eccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCC-cccHHHHHHHHhcCCceEEeCCC
Q 009282 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA-SGHNKALQAALATGILQLVGTDH 368 (538)
Q Consensus 290 h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~-~~~~~~l~~~l~~Gv~~~lgtD~ 368 (538)
|++.....+.++++++.|+.++++.+++++.++...+...+|..+..++++||+|. ....+.+++++..|...+++||+
T Consensus 247 h~ss~~~~~~i~~~r~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~Pplr~~~~~~~~l~~~l~~g~~~~~gsD~ 326 (521)
T 2ftw_A 247 HVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDN 326 (521)
T ss_dssp SCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSCCCCCTTHHHHHHHHHHHTSSCCCBCCB
T ss_pred ecCcHHHHHHHHHHHHcCCeEEEEEcchhhccCHHHhcCCCcccCcceEEcCCCCCChhhHHHHHHHhcCCCEEEEEeCC
Confidence 99987767889999999999999888888888877665545444456778899998 57788999999999999999999
Q ss_pred CCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEc
Q 009282 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 448 (538)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld 448 (538)
.++....+....++|...|+|++|.+..+...+..++..+++|++++++++|.|||+++|+++++|+|++|+.|||||||
T Consensus 327 ~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~t~~~A~~~gl~~~~G~i~~G~~ADlvv~d 406 (521)
T 2ftw_A 327 CTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWD 406 (521)
T ss_dssp CCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCEEEEE
T ss_pred CCCCHHHhhcccCChhhCCCCCccHHHHHHHHHHHHHhcCCCCHHHHHHHhChhHHHHhCCCCCCCCcCCCCcCCEEEEe
Confidence 98887766655568889999999999999998887888888999999999999999999998889999999999999999
Q ss_pred CCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCccccccchhhhHHHh
Q 009282 449 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNYLFHGLDKADAKYL 524 (538)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (538)
++..+.++.+++.+...++||+|+...+.|..||++|++||++|+++...+.|++++++++++++.++.+++....
T Consensus 407 ~~~~~~i~~~~~~~~~~~~p~~g~~~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 482 (521)
T 2ftw_A 407 PNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVPRPPFGPVFDGIEQRDKVRN 482 (521)
T ss_dssp EEEEEECCTTTCCCSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCSSCGGGTTHHHHHHHHC
T ss_pred CCCCEEEChHHccccCCCCCcCCCEeeeeEEEEEECCEEEEECCeecccCcCceEecCCCCCchHHHHHHHHhhhc
Confidence 9999999998999999999999999999999999999999999999987778999999998887788776666443
|
| >1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB: 1gkq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-57 Score=468.46 Aligned_cols=453 Identities=36% Similarity=0.627 Sum_probs=382.0
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHH
Q 009282 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~ 134 (538)
++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+...+.+..++++++...+.+
T Consensus 2 ~li~n~~vv~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~ 81 (458)
T 1gkp_A 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGFIDPHVHIYLPFMATFAKDTHETGSKAA 81 (458)
T ss_dssp EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCCTTCEEEECTTSEEEECEEEEEECSSCEETTEECSCCHHHHHHHH
T ss_pred EEEEeeEEECCCCceEeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEecCEEecccCCCcCCCCCcCHhHHHHHHHHH
Confidence 68999999998876789999999999999986543445789999999999999999999987643444677888888889
Q ss_pred HhCCcEEEecccCCCC-CCHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccC
Q 009282 135 LAGGTTMHIDFVIPIN-GSLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212 (538)
Q Consensus 135 l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~ 212 (538)
+++||||++++..... ....+.++...... .+..++++++......+++..++++++. +.|+..+|++.++++....
T Consensus 82 ~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 160 (458)
T 1gkp_A 82 LMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKTEGQLREIV-ADGISSFKIFLSYKNFFGV 160 (458)
T ss_dssp HHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTHHHHHHHHH-HTTCCEEEEEECSTTTTBC
T ss_pred HhCCccEEEeCCCCCCCCCHHHHHHHHHHHhccCceeeEEEEEeecCCchhhHHHHHHHH-HhCCCEEEEEeccCCCcCC
Confidence 9999999999864422 24556666554433 3456677776655555566677888887 6699999999888776778
Q ss_pred CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc
Q 009282 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM 292 (538)
Q Consensus 213 ~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~ 292 (538)
+.+.+.++++.|+++++++++|+++........+.+.+.|...+..|...+|...+.+.+.+++.++...+.++++.|++
T Consensus 161 ~~~~l~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~H~~ 240 (458)
T 1gkp_A 161 DDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGATGYVVHLS 240 (458)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSCHHHHHHHHHHHHHHHHHHTCEEEECSCC
T ss_pred CHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHhcCCCChhhccCcCCHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999999999999999999999887777666677788999988889888998888889999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCC
Q 009282 293 SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFN 372 (538)
Q Consensus 293 ~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~ 372 (538)
.....+.++.+++.|+.|+++.+++++++++..+....+ .+..+++.||+|.....+.+++++++|+.+++|||+.+.+
T Consensus 241 ~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~~~~-~g~~~~~~~p~r~~~~~~~l~~~~~~G~~~~~gtD~~~~~ 319 (458)
T 1gkp_A 241 CKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGV-EAMKYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFD 319 (458)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHH-HHHTTCCSSCCCCTHHHHHHHHHHHTTSSCEEECCBCCCC
T ss_pred CHHHHHHHHHHHHcCCeEEEEecccceeeCHHHhccccc-CCcceEEeCCCCCHHHHHHHHHHHhcCCeeEEECCCCCCC
Confidence 987778899999999999888899988888766532111 1234566789998888999999999999999999999888
Q ss_pred hhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCc
Q 009282 373 STQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSS 452 (538)
Q Consensus 373 ~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~ 452 (538)
...+....++|...++|++|.+..+...+++++..+++|++++++++|.|||++||+++++|+|++||.|||||+|.+..
T Consensus 320 ~~~k~~~~~~~~~~~~g~~g~~~~l~~~~~~~~~~~~ls~~~al~~~T~~pA~~lgl~~~~G~l~~G~~ADlvv~d~~~~ 399 (458)
T 1gkp_A 320 TEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYR 399 (458)
T ss_dssp HHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEETTCC
T ss_pred HHHhhcccCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhCHHHHhCCCCCCCcCCCCCcCCEEEEeCCCC
Confidence 76555444678888999999999999888777777779999999999999999999977899999999999999999999
Q ss_pred eeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCC
Q 009282 453 FEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 509 (538)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~ 509 (538)
+.++..++.+...++||++....++|..||++|++||++|+++...+.|++++++++
T Consensus 400 ~~~~~~~~~~~~~~~p~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~ 456 (458)
T 1gkp_A 400 GTISVKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPM 456 (458)
T ss_dssp EECCGGGCCSSSSCCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCCCCCC
T ss_pred eEEchHHcccccCCCccCCCEEeeEEEEEEECCEEEEECCeeccCCCCceeccCcCC
Confidence 999988888889999999998899999999999999999999987756999987654
|
| >2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase; HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3 c.1.9.6 PDB: 2fvk_A* 2fvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-57 Score=475.61 Aligned_cols=455 Identities=32% Similarity=0.530 Sum_probs=379.1
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-CCCChhhHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GSETIDDFFSG 130 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~~~~~~~~~~ 130 (538)
+++++|+|++|++++...+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+..+.. +..+++++...
T Consensus 2 ~m~~li~n~~vv~~~~~~~~~v~I~~g~I~~Ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~~~ 81 (559)
T 2fty_A 2 IYDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPGGIDAHVHVDEPLKLLGDVVDTMEHA 81 (559)
T ss_dssp CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGGEEEEEECTTCEEEECEEECCBCCCCTTCTTSCCSCCHHHH
T ss_pred CceEEEECcEEEcCCCceeeeEEEECCEEEEecCCCCCCCCCeEEeCCCCEEEcCEEeeccCcCccccccCCCHHHHHHH
Confidence 45789999999998877789999999999999986432234689999999999999999999987631 22367788888
Q ss_pred HHHHHhCCcEEEecccCCC---C-CC-HHHHHHH-HHHHhc-ccceeeeeeeeeecC---Chh---hH-HHHHHHHHHcC
Q 009282 131 QAAALAGGTTMHIDFVIPI---N-GS-LTAGFEA-YEKKAK-NSCMDYGFHMAITKW---DEV---VS-DEMEVMVKEKG 196 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~---~-~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~---~~~---~~-~~~~~~~~~~g 196 (538)
.+.++++||||++++.... . .. ..+.+.. ...... ...++++++...... .++ .+ +++.++.++.|
T Consensus 82 ~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~g~~l~~~~~~l~~~~G 161 (559)
T 2fty_A 82 TRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYG 161 (559)
T ss_dssp HHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcEEEEEECcCcccCCcchHHHHHHHHHHHHHHHhhcceeEEEeeeeeccCcCCCchhhhhHHHHHHHHHHHCC
Confidence 8999999999999987543 2 22 3333300 022222 355666665544333 233 55 67777775669
Q ss_pred CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHH
Q 009282 197 INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAI 276 (538)
Q Consensus 197 ~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l 276 (538)
+..+|+++.+++ ..++.+.++++++.|+++|+++.+|+++...+......+.+.|......|...+|...+.+.+.+++
T Consensus 162 ~~~iki~~~~~~-~~~s~e~l~~~~~~A~~~g~~v~~H~e~~~~i~~~~~~~~~~G~~~~~~~~~~~p~~~E~~av~~~i 240 (559)
T 2fty_A 162 VSSVKMFMTYPG-LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAI 240 (559)
T ss_dssp CCEEEEESSSTT-TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTTHHHHTSCHHHHHHHHHHHH
T ss_pred CCEEEEEecCCC-CcCCHHHHHHHHHHHHhCCCEEEEECCChHHHHHHHHHHHhcCCCChhhcccCCCHHHHHHHHHHHH
Confidence 999999998876 6789999999999999999999999988877766666678889988888888899999999999999
Q ss_pred HHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCccccc-------------------------C--C
Q 009282 277 RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW-------------------------H--S 329 (538)
Q Consensus 277 ~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~-------------------------~--~ 329 (538)
.++...+.++++.|++.....+.++++++.|+.|+++.+++++.+..+.+. . .
T Consensus 241 ~la~~~g~~vhi~H~s~~~~~~~i~~ak~~G~~Vt~e~~p~~l~l~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~ 320 (559)
T 2fty_A 241 TLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDD 320 (559)
T ss_dssp HHHHHTTCCEEECSCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGSCC--------CCSCCGGGCSSSTTTCTTC
T ss_pred HHHHHhCCCEEEEcCCCHHHHHHHHHHHHcCCceEEeecCcccccCHHHhhccccccccccccccCccccccccccccCc
Confidence 999999999999999998877999989999999999999999888766551 0 1
Q ss_pred CcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhh-------------hcCccCcccCCCCCcchhhh
Q 009282 330 DFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQK-------------AFGIDDFRKIPNGVNGIEER 396 (538)
Q Consensus 330 ~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~-------------~~~~~~~~~~~~g~~g~~~~ 396 (538)
.| .+..++++||+|...+.+++++++++|+.+++|||+.|++...+ ..+..+|..+|+|++|++..
T Consensus 321 ~~-~~~~~~~~PplR~~~~~~~l~~~l~~G~~~~igTD~~p~~~~~k~~~~~k~~~~~~~~~~~~~f~~~~~G~~g~e~~ 399 (559)
T 2fty_A 321 RF-IGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTR 399 (559)
T ss_dssp TT-GGGGGCCSSCCCCTTSHHHHHHHHHTTSCSEECCCBCCCBSSCCSSTTBGGGGEEGGGTEESCGGGSCCCBCCTTTH
T ss_pred cc-cccCcEECCCCCCHHHHHHHHHHHhcCceEEEEeCCCCCChhhccccccccccccccccccCCHhhCCCCCccHHHH
Confidence 11 24667899999999999999999999999999999998876642 11225788999999999999
Q ss_pred HHHHHHHhhhcCCC-CHHHHHHHHhHhHHHHcCCCCCCcccccC-CCccEEEEcCCC--------ceeeccCcccCCCCC
Q 009282 397 MHLVWDTMVESGQI-SVTDYVRLTSTECARIFNVYPRKGAILVG-SDADIIIFNPNS--------SFEITARSHHSRLDT 466 (538)
Q Consensus 397 ~~~~~~~~~~~~~l-s~~eal~~aT~~~A~~lg~~~~~GsI~~G-k~ADlvvld~~~--------~~~~~~~~~~~~~~~ 466 (538)
++.++..++..+.+ +++++++++|.|||+++|+++++|+|++| +.|||||||.+. ++.++.+++.+...+
T Consensus 400 l~~ll~~~v~~~~l~~~~~~~~~~t~~~A~~lgl~~~~G~i~~G~~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~s~~~~ 479 (559)
T 2fty_A 400 MPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDY 479 (559)
T ss_dssp HHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTTSBCCEEEECCSSCCCCCTTSCSBCCTGGGTSSCSC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhHHHHHHhCCCCCCceeeccCCcCCEEEEeCcccccccCCccEEEchHHhcccCCC
Confidence 99988778877889 99999999999999999997789999999 999999999998 889999999999999
Q ss_pred CccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCC
Q 009282 467 NVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 508 (538)
Q Consensus 467 ~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~ 508 (538)
+||+|..+.++|..||++|++||++|+++...+.|+++++.+
T Consensus 480 sp~~g~~~~g~v~~t~v~G~~v~~~g~~~~~~~~G~~~~~~~ 521 (559)
T 2fty_A 480 TPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLKRGK 521 (559)
T ss_dssp CTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBCCCCC
T ss_pred CCccCCEecceEEEEEECCEEEEECCeeccCCcCCeeecCCc
Confidence 999999888999999999999999999999887899999875
|
| >2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation, dihydropyrimi amidohydrolase, nucleotide metabolism, DPYS, dhpase, hydrolase; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=474.10 Aligned_cols=470 Identities=49% Similarity=0.863 Sum_probs=394.6
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCc----eEEecCCCeeeccccccccccccccCCCCChhhH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDV----KVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~----~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~ 127 (538)
+++++|+|++|++++...+++|+|+||||++||+....+.+. ++||++|++|+|||||+|+|+..++.+..+++++
T Consensus 26 ~~~~lI~ng~Vv~~~~~~~~dV~I~dGrI~~Ig~~~~~~~~~~~~~~vIDa~G~~V~PG~ID~H~Hl~~~~~~~~~~e~~ 105 (541)
T 2vr2_A 26 PSRLLIRGGRVVNDDFSEVADVLVEDGVVRALGHDLLPPGGAPAGLRVLDAAGKLVLPGGIDTHTHMQFPFMGSRSIDDF 105 (541)
T ss_dssp -CEEEEESCEEECSSCEEECEEEEETTEEEEEEC-----------CEEEECTTSEEEECEEEEEECTTCBCSSSBCSCCT
T ss_pred cCCEEEECcEEEcCCCceEeeEEEECCEEEEeccCCCCCcccccCceEEECCCCEEccCEEEecccCCCCCCCCcCHHHH
Confidence 367999999999987767899999999999999864333233 8999999999999999999998775444567788
Q ss_pred HHHHHHHHhCCcEEEecccCCCC-CCHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEee
Q 009282 128 FSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (538)
Q Consensus 128 ~~~~~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (538)
+...+.++++||||++|+..+.. ....+.++....... ....+++++.....++++..+++.++.++.|...+|+++.
T Consensus 106 ~~~~~~al~~GvTtv~d~~~~~~~~~~~~a~~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~el~~l~~~~G~~~~k~~~~ 185 (541)
T 2vr2_A 106 HQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRSWADPKVCCDYSLHVAVTWWSDQVKEEMKILVQDKGVNSFKMFMA 185 (541)
T ss_dssp THHHHHHHTTTEEEEEEEECCCTTCCHHHHHHHHHHHHTTTCSSEEEEEEEECSCSHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHHHHhCCeeeeccccCCCCCCCHHHHHHHHHHHhccCceEEEeeeecccCCCHHHHHHHHHHHHhCCCCEEEEEec
Confidence 88889999999999999865432 245566665554432 3556777777666666666778888775579999999998
Q ss_pred eCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCC
Q 009282 206 YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (538)
Q Consensus 206 ~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 285 (538)
+++.+.++.+.++++++.|+++++++.+|+++........+.+.+.|+..+.+|...++...+...+.+++.++...+.+
T Consensus 186 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~l~~~G~~~~~~h~~~~~~~~e~~a~~~~~~la~~~~~p 265 (541)
T 2vr2_A 186 YKDLYMVTDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKMLALGITGPEGHELCRPEAVEAEATLRAITIASAVNCP 265 (541)
T ss_dssp STTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCccCCCHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHHcCCCChhhccccchhHHHHHHHHHHHHHHHHhCCC
Confidence 88777889999999999999999999999988776667788888999999988988888888888889999999999999
Q ss_pred EEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCC-cccHHHHHHHHhcCCceEE
Q 009282 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA-SGHNKALQAALATGILQLV 364 (538)
Q Consensus 286 ~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~-~~~~~~l~~~l~~Gv~~~l 364 (538)
+++.|++.....+.++.+++.|+.++++++++++.++...+....|..+..++++||+|. ....+.++++++.|+..++
T Consensus 266 ~~~~h~ss~~~~~~i~~ar~~G~~v~~e~~~~~L~~d~~~~~~~~~~~~~~~~~~pplr~~~~~~~~l~~~l~~g~~~~~ 345 (541)
T 2vr2_A 266 LYIVHVMSKSAAKVIADARRDGKVVYGEPIAASLGTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTT 345 (541)
T ss_dssp EEEEEECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCSGGGGCSSHHHHHTTCCSSCCCSCTTHHHHHHHHHHTTSSCCC
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCeEEEEeehhhhcCCHHHhcCccccccCceEECCCCCCCcchHHHHHHHHhcCCeEEE
Confidence 999999987766888889999999998888888877766555444444456788999997 4568889999999999999
Q ss_pred eCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccE
Q 009282 365 GTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADI 444 (538)
Q Consensus 365 gtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADl 444 (538)
+||+.+++...+....+.|...|+|++|.+..+...+..++..+++|++++++++|.|||++||+++++|+|++|+.|||
T Consensus 346 gtD~~~~~~~~k~~~~~~~~~~p~G~~G~e~~l~~~~~~~v~~~~l~~~~~~~~~T~~pA~~lgl~~~~G~i~~G~~ADl 425 (541)
T 2vr2_A 346 GTDNCTFNTCQKALGKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAVGSDADI 425 (541)
T ss_dssp BCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHTTCTTTSSCCSTTSBCCE
T ss_pred EeCCCCCChHHhcccCCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCCCCCCccCCCCCCCE
Confidence 99999988877776667899999999999999988887788888899999999999999999999878999999999999
Q ss_pred EEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCcc-ccccchhhhH
Q 009282 445 IIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNY-LFHGLDKADA 521 (538)
Q Consensus 445 vvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 521 (538)
||||.+..+.++.+.+.+...++||++....++|..||++|++||++|+++...+.|++++++++++ ++.++.+++.
T Consensus 426 vv~d~~~~~~~~~~~~~~~~~~~p~~g~~~~g~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 503 (541)
T 2vr2_A 426 VIWDPKGTRTISAKTHHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAGVFSVTAGDGKFIPRKPFAEYIYKRIKQRDR 503 (541)
T ss_dssp EEEEEEEEEECCTTTCSSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCCCCSSCHHHHHHHHHHHH
T ss_pred EEEcCCcCeEeCHHHhhcccCCCccCCCEEeeeEEEEEECCEEEEECCeeccCCCCceEecCCCCcchhhhhHHHHHh
Confidence 9999999999998888888999999999999999999999999999999998888999999998764 4555544443
|
| >3e74_A Allantoinase; (beta/alpha)8-barrel domain, small beta-sheet domain, hydrolase, metal-binding, purine metabolism, zinc; HET: KCX; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=465.70 Aligned_cols=442 Identities=28% Similarity=0.400 Sum_probs=373.0
Q ss_pred cCcccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 50 QSSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 50 ~~~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
.|+++++|+|++|++++...+++|+|+||||++|++.... ..++||++|++|+|||||+|+|+..+ +....+.+..
T Consensus 20 ~m~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~--~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~~~~~ 95 (473)
T 3e74_A 20 HMSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGD--AKEVMDASGLVVSPGMVDAHTHISEP--GRSHWEGYET 95 (473)
T ss_dssp --CEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCC--EEEEEECTTCEEEECEEEEEECC-----------CHHH
T ss_pred cCcCCEEEEeeEEECCCCceeeeEEEECCEEEEEcCCCCC--CCcEEECCCCEEecCEEEEecccCCC--CCCcHHHHHH
Confidence 4567899999999999887789999999999999986543 27899999999999999999999887 6677888888
Q ss_pred HHHHHHhCCcEEEeccc-CCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeee
Q 009282 130 GQAAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (538)
..+.++++||||++++. ...+. ...+.++...+.. ....++++++......+ ..++.++. +.|+..+|+++.+
T Consensus 96 ~~~~~~~~G~Tt~~~~~~~t~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~---~~~l~~l~-~~G~~~~K~~~~~ 171 (473)
T 3e74_A 96 GTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYN---IDRLHELD-EVGVVGFKCFVAT 171 (473)
T ss_dssp HHHHHHHTTEEEEEECCSSSSSCSCSHHHHHHHHHHHTTTCSSEEEECEECCTTC---TTTHHHHH-HHTCSCEEEEC--
T ss_pred HHHHHHhCCEEEEEcCcccCCCCcccHHHHHHHHHHhccCCeEEEEEEeecccch---HHHHHHHH-HcCCCEEEEeccc
Confidence 99999999999999997 33332 3445555544444 34677777776554432 45566666 6799999999875
Q ss_pred C-------CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHH
Q 009282 207 K-------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLA 279 (538)
Q Consensus 207 ~-------~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~ 279 (538)
. +.+..+.+.++++++.|+++|.++.+|+++..............|......|...+|...+...+.+++.++
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~l~la 251 (473)
T 3e74_A 172 CGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLA 251 (473)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTCCEEEECSCHHHHHHHHHHHHHHTCCSHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCcccccccCCCCHHHHHHHHHHHHhcCCeEEEEecCHHHHHHHhhHHHhcCCcChhhcccCCCHHHHHHHHHHHHHHH
Confidence 2 345568899999999999999999999998766555555667788888888999999999999999999999
Q ss_pred HHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcC
Q 009282 280 EFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG 359 (538)
Q Consensus 280 ~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G 359 (538)
.+.+.++|+.|++.....+.++.+++.|+.|+++.++|++.+.++.+.. .+..++++||+|...+++.++++++.|
T Consensus 252 ~~~g~~lhi~Hvst~~~l~li~~ak~~G~~vt~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~L~~~l~~G 327 (473)
T 3e74_A 252 KVAGCRLHVCHVSSPEGVEEVTRARQEGQDITCESCPHYFVLDTDQFEE----IGTLAKCSPPIRDLENQKGMWEKLFNG 327 (473)
T ss_dssp HHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECTHHHHCCHHHHHH----HCGGGCCSSCCCCHHHHHHHHHHHHTT
T ss_pred HHhCCcEEEEeCCCHHHHHHHHHHHHcCCCeEEEEchHhhhcCHHHHhC----CCCcEEEeCCCCCHHHHHHHHHHHhCC
Confidence 9999999999999999989999999999999999999999999887753 246788999999999999999999999
Q ss_pred CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccC
Q 009282 360 ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVG 439 (538)
Q Consensus 360 v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~G 439 (538)
++++++||+.|++...+. .+|..+|+|+++++..++..+.+++..++++++++++++|.|||+++|++ ++|+|++|
T Consensus 328 ~~~~i~tDh~p~~~~~k~---~~f~~~~~G~~g~e~~l~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~-~~G~l~~G 403 (473)
T 3e74_A 328 EIDCLVSDHSPCPPEMKA---GNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQ-QKGRIAPG 403 (473)
T ss_dssp CCCEECCCBCCCCTTTTC---SCTTTSCCCBCCGGGHHHHHHHHHTTTTCCCHHHHHHHHTHHHHHHTTCT-TSSCCSTT
T ss_pred CCcEEEeCCCCCCHHHcc---cChhhcCCCcccHHhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC-CCCccCCC
Confidence 999999999999988774 48999999999999999999977888888999999999999999999995 58999999
Q ss_pred CCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE-CCeeeccCCCceEeecCC
Q 009282 440 SDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE-NDELNVVPGSGKYIEMRP 508 (538)
Q Consensus 440 k~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~-~~~~~~~~~~~~~~~~~~ 508 (538)
+.|||||+|++..+.++++++.+...++||+|..+.++|..||++|++||+ +|+++.. ..|+++++..
T Consensus 404 ~~AD~vv~d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~v~G~~v~~~~g~~~~~-~~G~~~~~~~ 472 (473)
T 3e74_A 404 KDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVA-PKGQFILKHQ 472 (473)
T ss_dssp SBCCEEEEESSCCEECCGGGCCSSSCCCTTTTCEESCEEEEEEETTEEEEETTTBCCSC-CCCCEECCC-
T ss_pred CccCEEEEeCCCCEEECHHHccccCCCCCCCCCEEeeEEEEEEECCEEEEecCCeEccC-CCceeecCCC
Confidence 999999999999999999999999999999999999999999999999999 9999987 5899998763
|
| >2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis, phosphoprotein, differentiation, CRMP, cytoplasm, TIM barrel, polymorphism, axonal pathfinding; 1.9A {Homo sapiens} PDB: 2gse_A 1kcx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-56 Score=469.10 Aligned_cols=469 Identities=45% Similarity=0.798 Sum_probs=389.2
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQ 131 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~ 131 (538)
+++++|+|++|++++...+++|+|+||||++||+....+.+.++||++|++|+|||||+|+|+.....+..+++++...+
T Consensus 25 ~~~~li~n~~v~~~~~~~~~~V~I~~grI~~Ig~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~ 104 (501)
T 2vm8_A 25 SDRLLIKGGKIVNDDQSFYADIYMEDGLIKQIGENLIVPGGVKTIEAHSRMVIPGGIDVHTRFQMPDQGMTSADDFFQGT 104 (501)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEEETTEEEEEESSCCCCSSSCEEECTTCEEEECEEEEEECTTCEETTEECSSCHHHHH
T ss_pred cCCEEEEeeEEECCCCceEeeEEEECCEEEEeccCCCCCCCCeEEECCCCEEeeCEEEeeecccccccCCCcHHHHHHHH
Confidence 35799999999998876789999999999999986543445789999999999999999999987633334567888888
Q ss_pred HHHHhCCcEEEecccCCCC-CCHHHHHHHHHHHhcc-cceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCC
Q 009282 132 AAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (538)
+.++++||||++++..... ....+.++.......+ ....++++......+.+...++.++.++.|+..+|+++.+...
T Consensus 105 ~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~l~~~~G~~~i~~~~~~~~~ 184 (501)
T 2vm8_A 105 KAALAGGTTMIIDHVVPEPGTSLLAAFDQWREWADSKSCCDYSLHVDISEWHKGIQEEMEALVKDHGVNSFLVYMAFKDR 184 (501)
T ss_dssp HHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEEEECCSCSHHHHHHHHHHHHHSCCCEEEEESSSTTT
T ss_pred HHHHhCCcEEEEeCCCCCCCCChHHHHHHHHHHHhcCCeeEEEEEEEecCCCcccHHHHHHHHHhCCceEEEEeeccCCC
Confidence 9999999999999864432 2445555555444432 4556666655544455556677777756799999998877655
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
...+.+.++++++.|+++|+++.+|+++.....+....+.+.|+..+.+|...+|...+...+.+.+.++...+.++|+.
T Consensus 185 ~~~~~~~l~~~~~~A~~~g~~v~~H~e~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~g~~~hi~ 264 (501)
T 2vm8_A 185 FQLTDCQIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAITIANQTNCPLYIT 264 (501)
T ss_dssp TBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHTTTCCSTHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCEEEEEccChHHHHHHHHHHHhcCCCChhhccccCCHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 66789999999999999999999999987666677778888999999999999999888889999999999999999999
Q ss_pred eccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCc-ccHHHHHHHHhcCCceEEeCCC
Q 009282 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDH 368 (538)
Q Consensus 290 h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~~~~l~~~l~~Gv~~~lgtD~ 368 (538)
|++.....+.++.+++.|+.++..++++++.++...+....+..+..+++.||+|.. ...+.++++++.|+.+++|||+
T Consensus 265 h~~~~~~~~~i~~~~~~G~~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~pp~r~~~~~~~~l~~~l~~G~~~~~gtD~ 344 (501)
T 2vm8_A 265 KVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAH 344 (501)
T ss_dssp EECCHHHHHHHHHHHHTTCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSCCCSCTTHHHHHHHHHHHTSSCCCBCCB
T ss_pred eCCcHHHHHHHHHHHhCCCcEEEEEChhHhhcChhhhcccccccCceEEECCCCCCCcchHHHHHHHHhcCceEEEEecC
Confidence 999887678888889999998877777888777665543322223346677888876 5688899999999999999999
Q ss_pred CCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEc
Q 009282 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFN 448 (538)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld 448 (538)
.+++...++...++|...|.|++|.+..+...+.+++..+++|++++++++|.|||+++|+++++|+|++||.|||||+|
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d 424 (501)
T 2vm8_A 345 CTFNTAQKAVGKDNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGSDADLVIWD 424 (501)
T ss_dssp CCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTHHHHHHHTCTTTSSCCCTTSBCCEEEEE
T ss_pred CCCChhhhhcccCChhhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHhHhHHHHhCCCCCCCccCCCCcCCEEEEc
Confidence 88887777665667888899999999988888877777778999999999999999999998789999999999999999
Q ss_pred CCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCc-cccccchhhh
Q 009282 449 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN-YLFHGLDKAD 520 (538)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 520 (538)
.++.+.++..++.+...++||++....+.|..||++|++||++|+++...+.|+++++.+++ +++.++++++
T Consensus 425 ~~~~~~~~~~~~~s~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 497 (501)
T 2vm8_A 425 PDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDGTLHVTEGSGRYIPRKPFPDFVYKRIKARS 497 (501)
T ss_dssp EEEEEECCTTTSSSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCSSCHHHHHHHHHHH
T ss_pred CCCCeeeccccccccccCCCccCcEeCceEEEEEECCEEEEECCeEccCCCCCceecCCCCCchHHHHHHHHh
Confidence 99999999888888899999999988889999999999999999999767789999999877 5877777665
|
| >1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia pickettii} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=450.64 Aligned_cols=452 Identities=38% Similarity=0.667 Sum_probs=371.9
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHH
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (538)
+++|+|++|++++...+++|+|+||||++|++..+ .+.++||++|++|+|||||+|+|+........++++++...+.
T Consensus 2 ~~li~n~~v~~~~~~~~~~v~I~~g~I~~ig~~~~--~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~e~~~~~~~~ 79 (457)
T 1nfg_A 2 DIIIKNGTIVTADGISRADLGIKDGKITQIGGALG--PAERTIDAAGRYVFPGGIDVHTHVETVSFNTQSADTFATATVA 79 (457)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC--CCSEEEECTTCEEEECEEEEEECCSCEETTEECSCCHHHHHHH
T ss_pred cEEEEeeEEEeCCCceeeeEEEECCEEEEecCCCC--CCCeEEeCCCCEEccceEeeccccccCcCCCCChhhHHHHHHH
Confidence 57999999999887678999999999999997543 3578999999999999999999997432222256778888889
Q ss_pred HHhCCcEEEecccCCCC-CCHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc
Q 009282 134 ALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (538)
Q Consensus 134 ~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (538)
++++||||++++..... ....+.++....... ...++++++......+.+...++.++. +.|+..+|++.++.....
T Consensus 80 ~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~k~~~~~~~~~~ 158 (457)
T 1nfg_A 80 AACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDSVIEELEVLP-DLGITSFKVFMAYRGMNM 158 (457)
T ss_dssp HHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHHHHHHTTTGG-GGTCCEEEEESSSTTTTB
T ss_pred HHhCCcEEEEeCCCCCCCCChHHHHHHHHHHhcccCccCEEEEEeecCCchhHHHHHHHHH-HcCCCEEEEeeccCCCCC
Confidence 99999999999864322 245666666555543 356677777766666655555565555 679999999887654334
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
.+.+.+.++++.+++.+.++.+|++.........+.+...|......|...+|...+.+.+.++++++.+.+.++++.|+
T Consensus 159 ~~~~~~~~~~~~a~~~~~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~h~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~H~ 238 (457)
T 1nfg_A 159 IDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVNAPIYIVHV 238 (457)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTSCHHHHHHHHHHHHHHHHHHTCCEEECCC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHhcCCcchhhccccCCHHHHHHHHHHHHHHHHHHCCCEEEEeC
Confidence 57888999999999999999999998877767777777888877777888888888899999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 292 ~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
++....+.+..+++.|..++++.++|+++++++.+..... .+..+.+.|+.|.......+++++++|+++++|||+.+.
T Consensus 239 ~~~~~~~~~~~~~~~G~~v~~~~~~h~~~~~~~~~~~~~~-~~~~~~~~p~~r~~~~~~~~~~~~~~G~~~~~gtD~~~~ 317 (457)
T 1nfg_A 239 TCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPARAKKDHDVLWNALRNGVFETVSSDHCSW 317 (457)
T ss_dssp CSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTT-GGGGGCCSSCCCCHHHHHHHHHHHHTTCCSCEECCBCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEEchHHhEeCHHHhccccc-cCceeEEcCCCCCHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 9876667787778889889999999999998877653221 345677889888888889999999999999999998877
Q ss_pred Chh-hhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCC
Q 009282 372 NST-QKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPN 450 (538)
Q Consensus 372 ~~~-~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~ 450 (538)
+.. .+..+.++|...++|++|.+..+...+ +++..+++|++++|+++|.|||++||+++++|+|++||.|||||+|.+
T Consensus 318 ~~~~~k~~~~~~~~~~~~g~~g~e~~~~~~~-~~~~~~~l~~~~~l~~~T~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~ 396 (457)
T 1nfg_A 318 LFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRISLTQFVELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPE 396 (457)
T ss_dssp CTTTTTTTTTTCGGGSCCCBCCTTTHHHHHH-HHHHTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCSTTSBCCEEEEEEE
T ss_pred ChHHhhhcccCCHhHCCCCcccHHHHHHHHH-HHHHcCCCCHHHHHHHHhhhHHHHhCCCCCCcCcCCCCccCEEEEeCC
Confidence 654 333222478888899999998888877 667777799999999999999999999778999999999999999999
Q ss_pred CceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCc
Q 009282 451 SSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510 (538)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~ 510 (538)
.++.++..++.+...++||+|....++|..||++|++||++|+++...+.|+++++++++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~~ 456 (457)
T 1nfg_A 397 AEMVIEQTAMHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKYK 456 (457)
T ss_dssp EEEECCGGGSCSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCCCCSCC
T ss_pred CCEEecHHHccCCCCCCCccCCEecceEEEEEECCEEEEECCccccCCCCCeeeCCCCCC
Confidence 999998888999999999999988899999999999999999999987669999987654
|
| >1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET: KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3 c.1.9.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=445.31 Aligned_cols=447 Identities=27% Similarity=0.375 Sum_probs=360.6
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCC-CCChhhHHHHH
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-SETIDDFFSGQ 131 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~-~~~~~~~~~~~ 131 (538)
++++|+|++|+++++..+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+... + ..+++++....
T Consensus 2 ~~~li~~~~v~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~~~~~~~~ 79 (458)
T 1gkr_A 2 FDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPGVVDEHVHIIDM--DLKNRYGRFELDS 79 (458)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTCCEEEEEECTTCEEEECEEEEEEECCCG--GGTTTSCCHHHHH
T ss_pred ceEEEECcEEECCCCceeeeEEEECCEEEEecCCCCCCCCCeEEeCCCCEEecCEEEeeecccCC--CCCCchhHHHHHH
Confidence 46899999999988767899999999999999864333456899999999999999999999865 3 34567777888
Q ss_pred HHHHhCCcEEEeccc-CCCC-CCHHHHHHHHHHHhc-ccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCC
Q 009282 132 AAALAGGTTMHIDFV-IPIN-GSLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKG 208 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~ 208 (538)
+.++++||||++++. .... ....+.++...+... .. ++++++.+... +..+++.++. +.|+..+|++++++.
T Consensus 80 ~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~-~~g~~~i~~~~~~~~ 154 (458)
T 1gkr_A 80 ESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLK-VDFALYGGGVP---GNLPEIRKMH-DAGAVGFKSMMAASV 154 (458)
T ss_dssp HHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCS-SEEEEEEECCT---TCHHHHHHHH-HTTCCEEEEESSCSB
T ss_pred HHHHcCCEEEEEeCCCCCCCCCCcHHHHHHHHHHhhhCc-eeEEEEeccCC---CCHHHHHHHH-HcCCcEEEEeecccC
Confidence 889999999999986 3221 234444544443332 23 55555443322 2355677777 568999999887653
Q ss_pred ---CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCC
Q 009282 209 ---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285 (538)
Q Consensus 209 ---~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 285 (538)
.+..+.+.++++++.|+++++++.+|++...........+...|...+..|...++...+.+.+.+++.++...+.+
T Consensus 155 ~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~~~G~~~~~~h~~~~~~~~~~~~~~~~~~la~~~g~~ 234 (458)
T 1gkr_A 155 PGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAGCR 234 (458)
T ss_dssp TTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHhhcCccchhhccccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 35678999999999999999999999988766555556666788766777887788888888899999999999999
Q ss_pred EEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEe
Q 009282 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVG 365 (538)
Q Consensus 286 ~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lg 365 (538)
+++.|+++....+.+..+++.|+.++++.++++++++++.+.. .+..+++.||+|......++++++++|+++++|
T Consensus 235 ~h~~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~pp~r~~~~~~~l~~~~~~G~~~~lg 310 (458)
T 1gkr_A 235 LIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAER----IGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLG 310 (458)
T ss_dssp EEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHH----HGGGGCCSSCCCCHHHHHHHHHHHHHTCCCEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHCCCcEEEEEchHHheeCHHHhhc----cCceEEEcCCCCCHHHHHHHHHHHhCCCceEEE
Confidence 9999999866667777777789888988899988887765532 234567789999888899999999999999999
Q ss_pred CCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEE
Q 009282 366 TDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 445 (538)
Q Consensus 366 tD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlv 445 (538)
||+.+.+...+..+..+++..+.|++|.+..+...+++++..+++|++++|+++|.|||+++|+++++|+|++||.||||
T Consensus 311 tD~~~~~~~~k~~g~~~~~~~~~~~~g~~~~l~~~~~~~~~~~~l~~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlv 390 (458)
T 1gkr_A 311 SDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLL 390 (458)
T ss_dssp CCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEE
T ss_pred eCCCCCChHHhccccCCHhHCCCCcccHHHHHHHHHHHHHHhCCCCHHHHHHHHhhhHHHHhCCCCCCccCCCCCcCCEE
Confidence 99988776654322236777788999988888888877777778999999999999999999997789999999999999
Q ss_pred EEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCc
Q 009282 446 IFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510 (538)
Q Consensus 446 vld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~ 510 (538)
|+|.+.++.++..++.+...++||+|....++|..||++|++||++|+++...+.|+++++++++
T Consensus 391 v~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~~~~~ 455 (458)
T 1gkr_A 391 ILDLDIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTRRNYE 455 (458)
T ss_dssp EEESCCCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCCC----
T ss_pred EEcCCcceEEcHHHccccCCCCCcCCCEeeeEEEEEEECCEEEEECCccccCCCCCeecCCcccc
Confidence 99999999999888999999999999988899999999999999999999987679999987665
|
| >3hm7_A Allantoinase; metallo-dependent hydrolase, protein structure initiative, PSI-2, NEW YORK structural genomix research CON nysgxrc; 2.60A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=443.40 Aligned_cols=429 Identities=28% Similarity=0.404 Sum_probs=369.0
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecC--CCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP--NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~--~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
+++++|+|++|+++++..+++|+|+||||++|++ ... +.+.++||++|++|+|||||+|+|+..+ +....+++..
T Consensus 5 ~~~~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~-~~~~~~id~~g~~v~PG~ID~H~H~~~~--~~~~~~~~~~ 81 (448)
T 3hm7_A 5 RFDLIIRSSTVVTETTTYRADVAIRNGIVSAITEPGSIS-SDDGPAIDGTGLHLFPGMVDVHVHFNEP--GRTEWEGFAS 81 (448)
T ss_dssp CCSEEEEEEEEECSSCEEEEEEEEETTEEEEEESTTCSC-TTSSCEEECTTCEEEECEEEEEECCCTT--TSGGGCCSHH
T ss_pred cccEEEEeeEEECCCCceEeEEEEECCEEEEeeCccCCC-CCCCeEEECCCCEEecCEEEeeeccCCC--CCCcHhHHHH
Confidence 5689999999999887788999999999999998 433 3467899999999999999999999877 5555677888
Q ss_pred HHHHHHhCCcEEEeccc-CCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeee
Q 009282 130 GQAAALAGGTTMHIDFV-IPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAY 206 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (538)
..+.++++||||++++. ..... ...+.+....+.. ....+++.++......+ .+++.++. +.|+.++|+++++
T Consensus 82 ~~~~~~~~Gvtt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~-~~g~~~~~~~l~~ 157 (448)
T 3hm7_A 82 GSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQLANEKSLVDYRFWGGLVPGN---IDHLQDLH-DGGVIGFKAFMSE 157 (448)
T ss_dssp HHHHHHTTTEEEEEECSSSSSSCSCSHHHHHHHHTHHHHHCSSEEEEEEECCTTC---GGGHHHHH-HTTCSEEEEESSS
T ss_pred HHHHHHhCCEEEEEeCCCCCCCCCChHHHHHHHHHHhccCCeeEEEEEEEecccC---HHHHHHHH-HcCCCEEEEeecc
Confidence 88999999999999986 33322 3344444443333 23556777666554433 45566666 5799999999887
Q ss_pred CCC---ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcC
Q 009282 207 KGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283 (538)
Q Consensus 207 ~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 283 (538)
... ...+.+.+++.++.|+++|+++.+|+++........+.+...|......|...+|...+.+.+.+++.+++..+
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~a~~~g~~v~vH~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~av~~~~~la~~~g 237 (448)
T 3hm7_A 158 CGTDDFQFSHDETLLKGMKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYSEARPIVSELEAVERILRFAQLTC 237 (448)
T ss_dssp CSSSSSCCCCHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHHHHTTCCSHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCccCcCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCcChhhccccCCHHHHHHHHHHHHHHHHHhC
Confidence 543 44589999999999999999999999988776666667778898888888889999999999999999999999
Q ss_pred CCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceE
Q 009282 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQL 363 (538)
Q Consensus 284 ~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~ 363 (538)
.++++.|++....++.++.+++.|+.++++.++|++.+.++.+.. .+..++++||+|...+.+.++++++.|+.++
T Consensus 238 ~~~~i~H~s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~g~~~~ 313 (448)
T 3hm7_A 238 CPIHICHVSSRKVLKRIKQAKGEGVNVSVETCPHYLLFSLDEFAE----IGYLAKCAPPLRERQEVEDLWDGLMAGEIDL 313 (448)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCHHHHHH----HCSTTCCSSCCCCHHHHHHHHHHHHHTCCCE
T ss_pred CCEEEEeCCCHHHHHHHHHHHhcCCCEEEEechHHHccCHHHhcC----CCCeEEEcCCCCCHHHHHHHHHHHhcCCccE
Confidence 999999999999889999999999999999999999998887653 2478899999999999999999999999999
Q ss_pred EeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCcc
Q 009282 364 VGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDAD 443 (538)
Q Consensus 364 lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~AD 443 (538)
++||+.|++...+..+ +|...|+|++|++..+...+..++..+++|++++++++|.|||+++|++++.|+|++|+.||
T Consensus 314 i~tD~~p~~~~~k~~~--~~~~~~~G~~g~e~~l~~~~~~~~~~~~l~~~~~~~~~t~~~A~~~g~~~~~g~l~~G~~Ad 391 (448)
T 3hm7_A 314 ISSDHSPSLPQMKTGK--TIFEVWGGIAGCQNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEAS 391 (448)
T ss_dssp ECCCBCCCCGGGGCCS--STTTSCCCBCCTTTHHHHHHHHTTTTTCCCHHHHHHHHTHHHHHHHTCTTTSSCCSTTSBCC
T ss_pred EEeCCCCCCHHHcccC--CHhhCCCCCccHHHHHHHHHHHHHhcCCcCHHHHHHHHhHHHHHHcCCCCCCCcccCCCcCC
Confidence 9999999998877642 48899999999999999999778878889999999999999999999988999999999999
Q ss_pred EEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCe
Q 009282 444 IIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493 (538)
Q Consensus 444 lvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~ 493 (538)
|||+|.+.++.++.+++.+...++||+|..+.++|..||++|++||++++
T Consensus 392 ~~~~d~~~~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~~~G~~v~~~~~ 441 (448)
T 3hm7_A 392 FTLIDLNESYTLNASDLYYRHPISPYVGQRFRGKVKHTICQGKHVYQDHE 441 (448)
T ss_dssp EEEEEEEEEEECCGGGCCSSSCCCTTTTCEEEEEEEEEEETTEEEEECC-
T ss_pred EEEEeCCCCEEEChHhcccccCCCCCCCCEEEEEEEEEEECCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999875
|
| >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, structural genomics; 2.00A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-53 Score=433.68 Aligned_cols=420 Identities=25% Similarity=0.373 Sum_probs=342.7
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHH
Q 009282 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAA 134 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~ 134 (538)
++|+|++|++.....+++|+|+||||++|++..+.+.+.++||++|++|+|||||+|+|+..+ +....+++....+.+
T Consensus 2 ~~i~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~id~~g~~v~PG~iD~H~H~~~~--g~~~~~~~~~~~~~~ 79 (424)
T 3gri_A 2 KLIKNGKVLQNGELQQADILIDGKVIKQIAPAIEPSNGVDIIDAKGHFVSPGFVDVHVHLREP--GGEYKETIETGTKAA 79 (424)
T ss_dssp EEEESCEEEETTEEEECEEEEETTEEEEEESCCCCCSSCEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHHHH
T ss_pred EEEEeeEEEcCCCceeeeEEEECCEEEEecCCCCCCCCCeEEECCCCEEEeCeEEeeecCCCC--CCCCHHHHHHHHHHH
Confidence 789999999943347899999999999999876545578999999999999999999999876 667788888899999
Q ss_pred HhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc-cceeeeeeeeeec-CChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc
Q 009282 135 LAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFM 211 (538)
Q Consensus 135 l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~ 211 (538)
+++||||++++....+. ...+.++...+.... +..++..+..... ..++.+.++.++. +.|...+ .+.+.+.
T Consensus 80 ~~~G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~~G~~~~----~~~~~~~ 154 (424)
T 3gri_A 80 ARGGFTTVCPMPNTRPVPDSVEHFEALQKLIDDNAQVRVLPYASITTRQLGKELVDFPALV-KEGAFAF----TDDGVGV 154 (424)
T ss_dssp HHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEECCCEESBGGGCSSSBCCHHHHH-TTTCCCE----EECSSCC
T ss_pred HhCCEEEEeECcCCCCCCChHHHHHHHHHHhccCCCceEEEEEEEecCCCcchHHHHHHHH-hcCcEEE----ecCCcCc
Confidence 99999999998654332 334444444433322 3344444433322 1223344566666 5676655 3455667
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
.+.+.++++++.|+++|+++.+|+++........ ...|......+...+|...+...+.+.+.++.+.+.++++.|+
T Consensus 155 ~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~---~~~g~~~~~~~~~~~p~~~E~~~v~r~~~la~~~g~~~~i~H~ 231 (424)
T 3gri_A 155 QTASMMYEGMIEAAKVNKAIVAHCEDNSLIYGGA---MHEGKRSKELGIPGIPNICESVQIARDVLLAEAAGCHYHVCHV 231 (424)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEECCCCGGGCTTCC---EESSHHHHHHTCCEECTHHHHHHHHHHHHHHHHHTCCEEECSC
T ss_pred CCHHHHHHHHHHHHhcCCEEEEeCCCHHHHhhhh---hhcCccchhhCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 7899999999999999999999998765321000 0000001112334578888889999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC
Q 009282 292 MSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF 371 (538)
Q Consensus 292 ~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~ 371 (538)
++....+.++.+++.|+.++++.++|++.+.++.+.. .+..++++||+|...+++.++++++.|+.++++|||.|+
T Consensus 232 s~~~~~~~i~~ak~~G~~v~~e~~ph~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~L~~~l~~G~i~~igtDhap~ 307 (424)
T 3gri_A 232 STKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDIPG----NNAIYKMNPPLRSTEDREALLEGLLDGTIDCIATDHAPH 307 (424)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGCCS----SCGGGCCSSCCCCHHHHHHHHHHHHTTSSCEECCCBCCC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEecHHHHhcCHHHHhC----cCceEEEeCCCCCHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 9999999999999999999999999999999887753 247889999999999999999999999999999999999
Q ss_pred ChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCC
Q 009282 372 NSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 451 (538)
Q Consensus 372 ~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~ 451 (538)
+...+. .+|...|+|++|++..++..+..++..+++|++++++++|.|||+++|+ ++|+|++|+.|||||+|.+.
T Consensus 308 ~~~~k~---~~~~~~~~G~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~--~~g~l~~G~~Ad~~~~d~~~ 382 (424)
T 3gri_A 308 ARDEKA---QPMEKAPFGIVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETFNL--EYGTLKENGYADLTIIDLDS 382 (424)
T ss_dssp CHHHHT---SCTTTSCCCCCCTTTHHHHHHHHHTTTSSCCHHHHHHHHTHHHHHHTTC--SCSCCCTTSBCCEEEEESSC
T ss_pred CHHHcc---CCHhHCCCCCccccccHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCC--CCCcccCCCcCCEEEEcCCC
Confidence 998876 3899999999999999999998888888899999999999999999999 58999999999999999999
Q ss_pred ceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCe
Q 009282 452 SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493 (538)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~ 493 (538)
.+.++.+++.+...++||+|..+.++|..||++|++||++|+
T Consensus 383 ~~~~~~~~~~~~~~~sp~~g~~~~g~v~~t~~~G~~v~~~g~ 424 (424)
T 3gri_A 383 EQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEVKFEGDK 424 (424)
T ss_dssp CEECCGGGCSSSCCCCTTTTCEESCEEEEEEETTEEEEEC--
T ss_pred CEEEchhhcccccCCCCcCCCEEeeeEEEEEECCEEEEeCCC
Confidence 999999999999999999999999999999999999999985
|
| >3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-52 Score=426.95 Aligned_cols=422 Identities=25% Similarity=0.385 Sum_probs=341.5
Q ss_pred cEEEECcEEEcCCC-ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHH
Q 009282 54 KILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQA 132 (538)
Q Consensus 54 ~~~i~n~~vv~~~~-~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~ 132 (538)
+++|+|++|++..+ ..+++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+... +....+++....+
T Consensus 2 ~~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~ 78 (428)
T 3mpg_A 2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENIT-ADNAEVIDVNGKLIAPGLVDVHVHLREP--GGEHKETIETGTL 78 (428)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEESSBEEECCSSCC-CTTSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHH
T ss_pred cEEEEeeEEEeCCCCeeeeeEEEECCEEEEecCCCC-CCCCeEEECCCCEEeeCEEEEeeccCCC--CCCchhHHHHHHH
Confidence 68999999997544 468999999999999998654 3468999999999999999999999876 6667888888899
Q ss_pred HHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeec-CChhhHHHHHHHHHHcCCcEEEEEeeeCCC
Q 009282 133 AALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (538)
Q Consensus 133 ~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (538)
.++++||||++++....+. ...+.++...+... .....+..+..... ...+.+.++.++. ..|...+ .+.+.
T Consensus 79 ~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~G~~~~----~~~~~ 153 (428)
T 3mpg_A 79 AAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLK-ELGAFAF----TDDGV 153 (428)
T ss_dssp HHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEESBGGGCSSSBCCHHHHH-HTTCCCE----ECTTS
T ss_pred HHHhCCeEEEEeCCCCCCCCCcHHHHHHHHHHhcccCCcEEEEEeeEecCCCcchHHHHHHHH-HhCCEEE----ECCCc
Confidence 9999999999998644332 33344443333322 13334433332222 1122344555666 5677665 34455
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
+..+.+.++++++.|+++|+++.+|+++........ ...|......+...+|...+...+.+.+.++...+.++++.
T Consensus 154 ~~~~~~~l~~~~~~a~~~g~~v~vH~~~~~~~~~~~---~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~g~~~~i~ 230 (428)
T 3mpg_A 154 GVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGC---VHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVC 230 (428)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCEEECCCCGGGCTTCS---EETTHHHHHTTCCEECTHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred CCCCHHHHHHHHHHHHhcCCeEEEECCChhHhhhHH---hhcCccchhhCcCCCCHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 667899999999999999999999998764321000 00011111123344778888899999999999999999999
Q ss_pred eccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCC
Q 009282 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (538)
Q Consensus 290 h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~ 369 (538)
|++.....+.++.+++.|+.++++.++|++.+.++.+.. .+..++++||+|...+++.++++++.|+.++++||+.
T Consensus 231 H~s~~~~~~~i~~a~~~G~~v~~e~~p~~l~l~~~~~~~----~~~~~~~~Pplr~~~~~~~l~~~l~~G~i~~i~tDh~ 306 (428)
T 3mpg_A 231 HVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPS----ADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHA 306 (428)
T ss_dssp SCCCHHHHHHHHHHHHTTCCEEECBCHHHHHCCGGGCCS----SCGGGCCSSCCCCHHHHHHHHHHHHHTSSCCBCCCBC
T ss_pred eCCCHHHHHHHHHHHhcCCCEEEEEchHHhEECHHHHhC----CCCeEEEeCCCCCHHHHHHHHHHHhCCCCcEEEcCCC
Confidence 999988889999999999999999999999999887753 3478899999999999999999999999999999999
Q ss_pred CCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcC
Q 009282 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 449 (538)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~ 449 (538)
|++...+.. +|...|+|++|++..++..+..++..+++|++++++++|.|||++||++ .|+|++|+.|||||+|.
T Consensus 307 p~~~~~k~~---~~~~~p~g~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~g~~--~g~i~~G~~Ad~~~~d~ 381 (428)
T 3mpg_A 307 PHTAEEKAQ---GIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLE--AGRLKEGRTADITIIDL 381 (428)
T ss_dssp CCCTTGGGS---CTTTSCSCCCCTTTHHHHHHHHTTTTTSSCHHHHHHTTTHHHHHHHTCS--CSCCCTTSBCCEEEEES
T ss_pred CCCHHHccc---CHhhCCCCceehhhHHHHHHHHHHHcCCCCHHHHHHHHhHHHHHHhCCC--CccccCCCcCCEEEEcC
Confidence 998887764 6899999999999999999987788888999999999999999999994 89999999999999999
Q ss_pred CCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeee
Q 009282 450 NSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELN 495 (538)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~ 495 (538)
+..+.++.+++.++..++||.|..+.++|.+||++|++||++|+++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~g~~~~g~v~~t~v~G~~v~~~g~~~ 427 (428)
T 3mpg_A 382 EQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKESAL 427 (428)
T ss_dssp SCCEECCGGGCSSSCCCCSCTTCEECCEEEEEEETTEEEEECSCC-
T ss_pred CCCEEEchhhccccCCCCCcCCCEEeeEEEEEEECCEEEEeCCccc
Confidence 9999999999999999999999999999999999999999999875
|
| >2gwn_A Dihydroorotase; zinc-binding prote structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; HET: KCX GOL; 1.85A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=412.46 Aligned_cols=435 Identities=20% Similarity=0.277 Sum_probs=338.0
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecC-CCCC---CCCceEEecCCCeeeccccccccccccccCCCCChhhH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQP-NINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDF 127 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~-~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~ 127 (538)
+++++|+|++|++++...+++|+|+||||++|++ .... +.+.++||++|++|+|||||+|+|+..+ +..+.+++
T Consensus 3 ~m~~li~~~~v~~~~~~~~~~v~i~~g~I~~i~~~~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~e~~ 80 (452)
T 2gwn_A 3 AMKILLRNALITNEGKTFPGSVMIDGAFISRIIEGELPADDNLSADEVIECSGLRLFPGCIDDQVHFREP--GLTHKATI 80 (452)
T ss_dssp CSEEEEEEEEEEETTEEEEEEEEEETTEEEEEEESCCCTTCCTTCSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCH
T ss_pred cccEEEECeEEECCCceeeeeEEEECCEEEEEecCCCccccCCCCCeEEeCCCCEEecCEEeeccccCCC--CCCcHHHH
Confidence 4578999999999876678899999999999987 5432 2356899999999999999999999876 55577888
Q ss_pred HHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEee
Q 009282 128 FSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMA 205 (538)
Q Consensus 128 ~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~ 205 (538)
....+.++++||||++++....+. ...+.++...+.. ....++++++......+ ..++.++. ..|..++|.++.
T Consensus 81 ~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~-~~g~~g~k~~~~ 156 (452)
T 2gwn_A 81 ASESRAAVAGGVTSFMDMPNTNPPTTMWERLLEKRQIGADTAWANYGFFFGGTNDN---IDEIKRVD-KHLVPGLKLFLG 156 (452)
T ss_dssp HHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECEECCSSC---HHHHHTCC-TTSCSCEEEESS
T ss_pred HHHHHHHHhCCeEEEEcCCCCCCCCChHHHHHHHHHHhhccCcccEEEEEeecCCC---HHHHHHHH-HcCCCEEEEEec
Confidence 888899999999999998643322 3344444433333 23566777666554432 23444444 457888998876
Q ss_pred eCC--CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHH-HHcCC-CCcccccccCCchHHHHHHHHHHHHHHH
Q 009282 206 YKG--SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRM-IELGI-TGPEGHALSRPPLLEGEATTRAIRLAEF 281 (538)
Q Consensus 206 ~~~--~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~-~~~g~-~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 281 (538)
+.. .+..+.+.+++.++ +.+..+..|+++...+......+ ...|. ..+..|...+|...+.+.+.++++++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~G~~~~~~~h~~~~~~~~~~~~l~~~~~la~~ 233 (452)
T 2gwn_A 157 SSTGNMLVDNKETLEKIFG---ECDLLIATHCEKEEIIRANKEHYKAKYGNDLDIHFHPLIRSEEACYRSSAEAVELAER 233 (452)
T ss_dssp SCCGGGBCCCHHHHHHHHH---HCCSCEEEECCCHHHHHHHHHHHHHHHCSCCCGGGHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCCHHHHHHHHH---HcCCEEEEcCCCHHHHHhHHhhhhhhcCcccchhhccccCChHHHHHHHHHHHHHHHH
Confidence 531 12235666665554 44888899998765555444333 44554 4445566667888888999999999999
Q ss_pred cCCCEEEEeccCHHHHHHHHH---HHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc
Q 009282 282 VNTPLYVVHVMSMDAMEEIAK---ARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT 358 (538)
Q Consensus 282 ~~~~~~~~h~~~~~~~~~i~~---~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~ 358 (538)
.+.++++.|++.....+.+.. +++. +|+++.++|+++++++.+.. .+..+...|+++......++++++++
T Consensus 234 ~g~~v~i~H~~~~~~~~~~~~~~a~~~~--~v~~~~~~h~~~l~~~~~~~----~g~~~~~~P~lr~~~~~~~l~~~l~~ 307 (452)
T 2gwn_A 234 MNARLHILHLSTEKELSLFRNDIPTAQK--RITSEVCVHHLWFSDTDYGR----LGNRIKWNPAIKKESDREALRAAVRN 307 (452)
T ss_dssp HTCCEEECCCCCTGGGGGSCCSSCGGGC--SEEEEEEHHHHHCCGGGHHH----HGGGGCCSSCCCCHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCCCHHHHHHHHHhhcccCC--CeEEEEchHHhhcCHHHHhc----cCceEEECCCCCCHHHHHHHHHHHHC
Confidence 999999999986544344333 1222 57888888999998877643 34677788998888888999999999
Q ss_pred CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCccccc
Q 009282 359 GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILV 438 (538)
Q Consensus 359 Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~ 438 (538)
|+++++|||+.+.+...+. .+|..+|+|+++++..+...+. .+..+++|++++++++|.|||+++|++ ++|+|++
T Consensus 308 Gv~~~lgTD~~~~~~~~k~---~~~~~~~~g~~~~e~~~~~~~~-~~~~~~ls~~~~l~~~T~~~A~~lgl~-~~G~l~~ 382 (452)
T 2gwn_A 308 GRIDIIATDHAPHLLREKE---GSCLQAASGGPLVQHSLLALLE-LCNQGIFSIEEIVSKTAHIPATLFAIE-KRGYIRP 382 (452)
T ss_dssp SSSCEEECCBCCCCHHHHC---SCTTTSCCCCCCTTTHHHHHHH-HHHTTSSCHHHHHHHHTHHHHHHHTBT-TCSSCCT
T ss_pred CCceEEEeCCCCCChHHhc---CChhhCCCCCccHHHHHHHHHH-HHHcCCCCHHHHHHHHhHhHHHHcCCC-CCCcccC
Confidence 9999999999888766443 3788899999999988887775 555667999999999999999999996 7999999
Q ss_pred CCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeec
Q 009282 439 GSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 506 (538)
Q Consensus 439 Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~ 506 (538)
||.|||||+|.++++.++.+++.+...++||+|..+.++|..||++|++||++|+++...+.|+++++
T Consensus 383 G~~ADlvv~d~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~v~v~G~~v~~~g~~~~~~~~G~~~~~ 450 (452)
T 2gwn_A 383 GYYADLVLVDPSSPHTVSADNILSLCGWSPFEGFTFSHSVAYTFVNGCLAYAKGRLAESRPTVHPLFF 450 (452)
T ss_dssp TSBCCEEEEETTSCEECCTTTCCSTTCCCTTTTCEESCEEEEEEETTEEEEETTEECSSCCCCCBCCB
T ss_pred CCcCCEEEEcCCCCeEECHHHccccCCCCCCCCcEEeeeEEEEEECCEEEEECCeeccCCCCceeeCC
Confidence 99999999999999999988899999999999998889999999999999999999987678999975
|
| >2z00_A Dihydroorotase; zinc binding protein, hydrolase, metal-binding, pyrimidine biosynthesis, structural genomics, NPPSFA; 2.42A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-47 Score=390.73 Aligned_cols=411 Identities=24% Similarity=0.355 Sum_probs=312.8
Q ss_pred EEEECcEEEcCCC-ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHH
Q 009282 55 ILIKGGTVVNAHH-QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAA 133 (538)
Q Consensus 55 ~~i~n~~vv~~~~-~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~ 133 (538)
++|+|++|+++++ ..+++|+|+||||++|++. ++.++||++|++|+|||||+|+|+... +....+++....+.
T Consensus 2 ~~i~~~~v~~~~~~~~~~~v~i~~g~I~~i~~~----~~~~~id~~g~~v~PG~iD~H~H~~~~--~~~~~~~~~~~~~~ 75 (426)
T 2z00_A 2 ILIRNVRLVDARGERGPADVLIGEGRILSLEGG----EAKQVVDGTGCFLAPGFLDLHAHLREP--GEEVKEDLFSGLLA 75 (426)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTEEEESBCC----CCSEEEECTTCEEEECEEEEEECCCTT--TCTTTCCHHHHHHH
T ss_pred EEEEeeEEECCCCceecceEEEECCEEEEEecC----CCceEEeCCCCEEecCEEEeccccCCC--CCCchHHHHHHHHH
Confidence 6899999999875 3689999999999999875 246899999999999999999999875 44456777888899
Q ss_pred HHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc-cceeeeeeeeeec-CChhhHHHHHHHHHHcCCcEEEEEeeeCCCc
Q 009282 134 ALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAYKGSF 210 (538)
Q Consensus 134 ~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~ 210 (538)
++++||||++++...... ...+.++...+.... +.+++........ ...+...++.++. +.|...++ .++.+
T Consensus 76 ~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~i~----~~~~~ 150 (426)
T 2z00_A 76 AVRGGYTDLVSMPNTKPPVDTPEAVRALKEKAKALGLARLHPAAALTEKQEGKTLTPAGLLR-EAGAVLLT----DDGRT 150 (426)
T ss_dssp HHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHTSSEECCEECSBGGGCSSSBCCHHHHH-HHTCCEEE----CTTSC
T ss_pred HHhCCccEEEecCCCCCCcChHHHHHHHHHHhcccCcccEEEEEEeecCCChhhHHHHHHHH-HcCCEEEE----CCCcC
Confidence 999999999998643221 222333333322222 1123222221111 1112234455555 35776664 23445
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHH----HHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHH-----
Q 009282 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQ----KRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF----- 281 (538)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----- 281 (538)
..+.+.++++++.|+++|+++.+|+.+........ ......|. ..+|...+...+.++++++..
T Consensus 151 ~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~g~~~~~~g~-------~~~~~~~e~~~~~~~~~~a~~~~~~~ 223 (426)
T 2z00_A 151 NEDAGVLAAGLLMAAPLGLPVAVHAEDAGLRRNGVMNDGPLADLLGL-------PGNPPEAEAARIARDLEVLRYALRRS 223 (426)
T ss_dssp CCCHHHHHHHHHHHGGGTCCEEECCCCHHHHTTCSEECSHHHHHHTC-------CEECHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhCCEEEEeCCCHHHHhhhhhccCccchhccc-------ccCChHHHHHHHHHHHHHHhhccccc
Confidence 67899999999999999999999998764321000 00111222 224555566677788888887
Q ss_pred -cCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCC
Q 009282 282 -VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI 360 (538)
Q Consensus 282 -~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv 360 (538)
.+.++++.|++.....+.++++++.|+.|+++.+++++.+..+.+.. .+..++..||++...++..++++++.|+
T Consensus 224 ~~g~~~~i~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~~plr~~~~~~~l~~~l~~G~ 299 (426)
T 2z00_A 224 PATPRLHVQHLSTKRGLELVREAKRAGLPVTAEATPHHLTLTEEALRT----FDPLFKVAPPLRGEEDREALLEGLLDGT 299 (426)
T ss_dssp SSCCCEEETTCCCHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGGG----CCGGGCCSSCCCCHHHHHHHHHHHHHTS
T ss_pred cCCCcEEEEeCCCHHHHHHHHHHHHcCCCEEEEEchHHhEeCHhHhhc----cCceEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 79999999999877678899999999999999999888776655432 2345667889998888889999999999
Q ss_pred ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCC
Q 009282 361 LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGS 440 (538)
Q Consensus 361 ~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk 440 (538)
.+++|||+.|.+...+. ++|...|.|+.+.+..+...+..++..+++|++++++++|.|||+++|++ +|+|++||
T Consensus 300 ~~~lgsD~~p~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ls~~~~l~~~T~n~A~~lgl~--~G~l~~G~ 374 (426)
T 2z00_A 300 LDAIATDHAPHTLAEKE---KDLLRAPFGIPSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLGLP--PLHLEEGA 374 (426)
T ss_dssp SCEECCCBCCCCTTGGG---SCTTTSCCCBCCTTTHHHHHHHHTHHHHCCCHHHHHHHHTHHHHHHHTCC--CCCSSTTS
T ss_pred cEEEecCCCCCCHHHcc---CChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHHHhCCC--cccccCCC
Confidence 99999998887766543 47888899999888888877766666777999999999999999999994 89999999
Q ss_pred CccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCe
Q 009282 441 DADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDE 493 (538)
Q Consensus 441 ~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~ 493 (538)
.|||||+|. .++.++++++.++..++||+|....++|..||++|++||++++
T Consensus 375 ~ADlvv~d~-~~~~~~~~~~~~~~~~~p~~g~~~~~~v~~t~v~G~~v~~~~~ 426 (426)
T 2z00_A 375 EASLVLLSP-KERPVDPSAFASKARYSPWAGWVLGGWPVLTLVAGRIVHEALK 426 (426)
T ss_dssp BCCEEEEEC-CCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEEECCC
T ss_pred CCCEEEEeC-CcEEEcHHHccccCCCCCcCCCEEEEEEEEEEECCEEEEecCC
Confidence 999999998 7788888889898999999999888999999999999999875
|
| >1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine; 1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB: 1xrf_A 3d6n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=391.96 Aligned_cols=417 Identities=24% Similarity=0.324 Sum_probs=285.3
Q ss_pred cccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
+++++|+|++|++++. ..+++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+... +....+++..
T Consensus 46 mm~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~iD~~g~~v~PGlID~H~H~~~~--~~~~~~~~~~ 122 (467)
T 1xrt_A 46 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNIL-VPEAEIIDAKGLIVCPGFIDIHVHLRDP--GQTYKEDIES 122 (467)
T ss_dssp CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCC-CSSEEEEECTTSEEEECEEEEEECCCTT--TCTTTCCHHH
T ss_pred eeeEEEEeeEEECCCCCceecceEEEECCEEEEecCCCC-CCCCcEEeCCCCEEccCEEEEeecccCC--CCCchhhHHH
Confidence 5578999999998765 368899999999999997543 3456899999999999999999999765 4445677778
Q ss_pred HHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc-cceeeeeeeeeec-CChhhHHHHHHHHHHcCCcEEEEEeee
Q 009282 130 GQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITK-WDEVVSDEMEVMVKEKGINSFKFFMAY 206 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ik~~~~~ 206 (538)
..+.++++||||++++...... ...+.++...+.... +.+++........ ...+...++.++. +.|+..++ .
T Consensus 123 ~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~l~-~~g~~~i~----~ 197 (467)
T 1xrt_A 123 GSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKGKEIADFYSLK-EAGCVAFT----D 197 (467)
T ss_dssp HHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCSSSBCCHHHHH-HHTCCCBC----C
T ss_pred HHHHHHhCCeEEEEecCCCCCCCChHHHHHHHHHHhcccCcceEEEEeeecCCCCcccHHHHHHHH-HcCCEEEE----c
Confidence 8889999999999998643221 223333333332221 2233322221111 1112233445555 34655442 3
Q ss_pred CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCE
Q 009282 207 KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286 (538)
Q Consensus 207 ~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 286 (538)
.+....+.+.++++++.|+++|+++.+|+++.......+ ..|......+....+...+...+.+.+.++...+.++
T Consensus 198 ~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~~~~~l----~~g~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~g~~~ 273 (467)
T 1xrt_A 198 DGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVI----NEGEVSALLGLSSRAPEAEEIQIARDGILAQRTGGHV 273 (467)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC------------------------CHHHHHHHHHHHHHHHCCEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCEEEEECCCHHHHHHHH----hcCccchhcccccCChHHHHHHHHHHHHHHHHhCCCE
Confidence 344567899999999999999999999997754322111 1121111111222344455566677777888889999
Q ss_pred EEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeC
Q 009282 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (538)
Q Consensus 287 ~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgt 366 (538)
++.|++.....+.++++++.|+.++++.+++++.+..+.+.. .+..+++.||+|......++++++++|+++++||
T Consensus 274 hi~H~~~~~~~~~i~~~~~~G~~v~~~~~p~~~~~~~~~~~~----~~~~~~~~pplr~~~~~~~l~~~l~~Gv~~~lgT 349 (467)
T 1xrt_A 274 HIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLN----SGANARVNPPLRKKEDRLALIEGVKRGIIDCFAT 349 (467)
T ss_dssp EESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC--------------------------CCHHHHHHHHHHTCSCEECC
T ss_pred EEEeCCCHHHHHHHHHHHhcCCcEEEeccHHHHhcCHhHhhc----cCceEEEcCCCCCHHHHHHHHHHHhCCceEEEee
Confidence 999999887668888899999999988888887766554321 1245567788888888999999999999999999
Q ss_pred CCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEE
Q 009282 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIII 446 (538)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvv 446 (538)
|+.+.+...+ +.|...+.|+.+.+..+...++ +++.+.+|++++|+++|.|||++||++ +|+|++||.|||||
T Consensus 350 D~~~~~~~~~----~~~~~~~~g~~g~e~~l~~~l~-~~~~g~ls~~~al~~aT~n~A~~lgl~--~G~I~~G~~ADlvv 422 (467)
T 1xrt_A 350 DHAPHQTFEK----ELVEFAMPGIIGLQTALPSALE-LYRKGIISLKKLIEMFTINPARIIGVD--LGTLKLGSPADITI 422 (467)
T ss_dssp CBCCCCC---------------CCCCGGGHHHHHHH-HHHTTSSCHHHHHHHHTHHHHHHHTCS--CSCCCTTSBCCEEE
T ss_pred CCCCCChhHh----cccccCCCCCccHHHHHHHHHH-HHHcCCCCHHHHHHHhccCHHHHhCCC--cccccCCCCCCEEE
Confidence 9987765433 2467788999998888777775 666666999999999999999999994 89999999999999
Q ss_pred EcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 447 FNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 447 ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
+|.++.+.++++++.+...++||++....++|..||++|++||++
T Consensus 423 ld~~~~~~i~~~~~~~~~~~~p~~g~~~~~~V~~viv~G~~v~~~ 467 (467)
T 1xrt_A 423 FDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467 (467)
T ss_dssp EEEEEEEECSTTTCCSSCCCCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred EeCCCCEEEChHHccCcCCCCCccCCEEeEEEEEEEECCEEEecC
Confidence 999998899888888888899999998888999999999999985
|
| >4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural genomics, PSI-biology; HET: MSE MTA; 1.80A {Chromobacterium violaceum} PDB: 4f0s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=351.29 Aligned_cols=380 Identities=18% Similarity=0.240 Sum_probs=259.0
Q ss_pred cCcccEEEECcEEEcCCC----ceeeeEEEeCCEEEEecCCCCC--CCCceEEecCCCeeeccccccccccccccC-C--
Q 009282 50 QSSSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G-- 120 (538)
Q Consensus 50 ~~~~~~~i~n~~vv~~~~----~~~~~V~I~~grI~~Vg~~~~~--~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~-- 120 (538)
.|+++++|+|++|+++++ .++++|+|+||||++||+.... .++.++||++|++|+|||||+|+|+..... +
T Consensus 3 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~ 82 (447)
T 4f0r_A 3 QSRYEKIISARWIITVETDGEVLENHAIAIRDGKIAAIIPAADAAGLEADERLELPDHVLMPGLINLHGHSAMSLLRGLA 82 (447)
T ss_dssp --CEEEEEEEEEEECCSSTTCEEEEEEEEEETTEEEEEEEHHHHTTSCEEEEEEEEEEEEEECEEEEEECGGGGGGTTSS
T ss_pred CCcccEEEECCEEEeeCCCCcEeeceEEEEECCEEEEEecccccccCCCCeEEeCCCcEEeeCccchhhChhhHhhccCC
Confidence 357789999999998764 2689999999999999985432 246789999999999999999999965421 1
Q ss_pred -------------------CCChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee
Q 009282 121 -------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI 177 (538)
Q Consensus 121 -------------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (538)
..+++++.. ....++++||||++|+... .....+...+.+.+..+..+.....
T Consensus 83 ~~~~~~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~~~~~~ 158 (447)
T 4f0r_A 83 DDKALMDWLTNYIWPTEGKHVHDDFVFDGSLLAMGEMIRGGTTTINDMYFY----NAAVARAGLASGMRTFVGCSILEFP 158 (447)
T ss_dssp CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECBSC----HHHHHHHHHHHTCEEEEEEEECSSC
T ss_pred CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEEchhcCCC
Confidence 123333332 3445788999999998432 2344445555554444433332111
Q ss_pred e---cCChhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcC
Q 009282 178 T---KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELG 252 (538)
Q Consensus 178 ~---~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g 252 (538)
. ...++.++...++.+. .+...+++...++..+..+.+.++++++.|+++|+++++|+.+. ..+...++ ..|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~~~~~~~~~~~~---~~g 235 (447)
T 4f0r_A 159 TNYASNADDYIAKGMAERSQFLGEDLLTFTLAPHAPYTVSDDTFRKVVTLAEQEDMLIHCHIHETADEVNNSVK---EHG 235 (447)
T ss_dssp CSSCSSHHHHHHHHHHHHHTTTTCTTEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HHS
T ss_pred cccccCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH---HcC
Confidence 1 1223445555555532 36677888888888788899999999999999999999999654 33333322 223
Q ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcc
Q 009282 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
... ++ .+......+.+..+.|+...+. +.++++++.|+.++.+|.. ++.
T Consensus 236 ~~~----------------i~-~~~~~g~~~~~~~~~H~~~~~~-~~~~~~~~~g~~~~~~p~~-------------~~~ 284 (447)
T 4f0r_A 236 QRP----------------LA-RLQRLGLLSPRLVAAHMVHLND-AEVELAARHGLSTAHNPAS-------------NMK 284 (447)
T ss_dssp SCH----------------HH-HHHHHTCCSTTEEEEECCSCCH-HHHHHHHHHTCEEEECHHH-------------HHH
T ss_pred CCH----------------HH-HHHHcCCCCCCcEEEeccCCCH-HHHHHHHHcCCEEEECchh-------------hhh
Confidence 211 11 1222334567888999998876 8899999999998888764 111
Q ss_pred cccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCC
Q 009282 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQI 410 (538)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~l 410 (538)
.+... .+++.+++.|+++++|||+.+.+....+ +. +........+.. ...++
T Consensus 285 ~~~~~------------~~~~~~~~~Gv~v~lgTD~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~l 338 (447)
T 4f0r_A 285 LASGI------------SPVSKLMDAGVAVGIGTDGAASNNKLDM-----LA---------ETRLAALLAKVGTLDPTSV 338 (447)
T ss_dssp TTCCC------------CCHHHHHHTTCEEEECCCCGGGTCCCCH-----HH---------HHHHHHHHHHHHHTCTTSS
T ss_pred cCCCC------------CcHHHHHHCCCcEEEeCCCCcCCCCCCH-----HH---------HHHHHHHHhhhhccCCCCC
Confidence 11111 1278899999999999998755322111 11 222222222222 24579
Q ss_pred CHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE
Q 009282 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 411 s~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
|++++|+++|.|||+++|+++++|+|++||.|||||||.++++..+..+.. ....+... ..+|..||++|++||+
T Consensus 339 ~~~~al~~~T~n~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~---~~~~~~~~--~~~v~~v~v~G~~v~~ 413 (447)
T 4f0r_A 339 PAAAAIRMATLNGARALGIADKVGSVKVGKQADLIALDLAQLETAPAFDPI---SHVVYAAG--REQVSHVWVKGRALMR 413 (447)
T ss_dssp CHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSCHH---HHHHHTCC--GGGEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCCcCCCcChH---HHheecCC--CCCceEEEECCEEEEE
Confidence 999999999999999999988899999999999999999887655422111 11112221 3579999999999999
Q ss_pred CCeeeccC
Q 009282 491 NDELNVVP 498 (538)
Q Consensus 491 ~~~~~~~~ 498 (538)
+|++++.|
T Consensus 414 ~g~~~~~d 421 (447)
T 4f0r_A 414 ERKLTTLD 421 (447)
T ss_dssp TTEESSSC
T ss_pred CCeECcCC
Confidence 99999987
|
| >3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel, beta-fold, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=347.03 Aligned_cols=380 Identities=19% Similarity=0.198 Sum_probs=256.5
Q ss_pred cCcccEEEECcEEEcCCC----------ceeeeEEEeCCEEEEecCCCC-CCCCceEEecCCCeeecccccccccccccc
Q 009282 50 QSSSKILIKGGTVVNAHH----------QQIADVYVEDGIVVAVQPNIN-VGDDVKVLDATGKFVMPGGIDPHTHLAMEF 118 (538)
Q Consensus 50 ~~~~~~~i~n~~vv~~~~----------~~~~~V~I~~grI~~Vg~~~~-~~~~~~vID~~G~~v~PGlID~H~H~~~~~ 118 (538)
.++++++|+|++|+++++ .++++|+|+||||++||+... .+.+.++||++|++|+|||||+|+|+....
T Consensus 20 ~~~~~~li~~~~v~~~~~~~~~~~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~ 99 (468)
T 3lnp_A 20 KAHADLRINSHWIIPIENTTDHNLVSNILIDHCLLIKDGIILAIEPQSSCQIPATETLDLGQQVLMPGWVNAHGHAAMSL 99 (468)
T ss_dssp -CCEEEEEEEEEECCSSCC-----CCSCEEEEEEEEETTEEEEEEETTTCCCCEEEEEECCSEEEEECEEECSCCGGGGG
T ss_pred CccccEEEECCEEEeecCCcccccCccEecceEEEEECCEEEEEeCCccccCCCCeEEeCCCcEEEeCeechhhChhhhh
Confidence 346789999999998753 258999999999999998654 345689999999999999999999996542
Q ss_pred C-C---------------------CCChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeee
Q 009282 119 M-G---------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG 172 (538)
Q Consensus 119 ~-~---------------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (538)
. + ..++++++. ....++++||||++|+... .....+...+.+.+..+..+
T Consensus 100 ~~g~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~ 175 (468)
T 3lnp_A 100 FRGLADDLPLMTWLQEHVWPAEAQHVDEHFVKQGTELAIAEMIQSGTTTFADMYFY----PQQSGEAALAAGIRAVCFAP 175 (468)
T ss_dssp GTTSSCSCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEECCSC----HHHHHHHHHHHTCEEEEEEE
T ss_pred hccCcCCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEecc
Confidence 1 1 123333332 3445689999999998432 23344444555544444333
Q ss_pred eeeeee---cCChhhHHHHHHHHHH-cCCc-----EEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHH
Q 009282 173 FHMAIT---KWDEVVSDEMEVMVKE-KGIN-----SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVF 242 (538)
Q Consensus 173 ~~~~~~---~~~~~~~~~~~~~~~~-~g~~-----~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~ 242 (538)
...... ...++.++...++.+. .+.. .+++...+++.+.++.+.++++++.|+++|+++++|+.+. ..+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~ 255 (468)
T 3lnp_A 176 VLDFPTNYAQNADEYIRKAIECNDRFNNHPMNEQGLVQIGFGPHAPYTVSDEPLKEITMLSDQLDMPVQIHLHETDFEVS 255 (468)
T ss_dssp ECSSCCSSCSSHHHHHHHHHHHHHHHHSCGGGTTCCEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCSHHHHH
T ss_pred ccCCCcccccCHHHHHHHHHHHHHHhhcCCcccCceEEEEEEcCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHH
Confidence 321111 1123344444444422 2444 6777778888888899999999999999999999999654 3333
Q ss_pred HHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccC
Q 009282 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322 (538)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~ 322 (538)
..++ ..|... ++ .+......+.++.+.|+...+. +.++++++.|+.++.||...
T Consensus 256 ~~~~---~~g~~~----------------i~-~~~~~g~l~~~~~~~H~~~~~~-~~~~~l~~~g~~v~~~p~s~----- 309 (468)
T 3lnp_A 256 ESLE---TFNKRP----------------TQ-RLADIGFLNERVSCVHMTQVDD-GDIKILQKTGASIIHCPESN----- 309 (468)
T ss_dssp HHHH---HHSSCH----------------HH-HHHHTTCCSTTEEEEECCSCCH-HHHHHHHHHCCEEEECHHHH-----
T ss_pred HHHH---HhCCCH----------------HH-HHHHcCCCCCCeEEEeccCCCH-HHHHHHHhcCCEEEEChhhh-----
Confidence 3222 233211 11 1122233567889999998876 88999999999998887642
Q ss_pred cccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHH
Q 009282 323 DSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWD 402 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~ 402 (538)
+..+... .+++.+++.|+++++|||+...+....+ +. +..+...+.
T Consensus 310 --------~~~~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~~~~~-----~~---------~~~~~~~~~ 355 (468)
T 3lnp_A 310 --------LKLASGF------------CPIAKLSAANIPLAIGTDGAASNNDLDM-----FS---------ETKTAALLA 355 (468)
T ss_dssp --------HHTTCCC------------CCHHHHHHTTCCEEECCCCTTSSCCCCH-----HH---------HHHHHHHHH
T ss_pred --------hhcCCCC------------CCHHHHHHCCCeEEEECCCCcCCCCCCH-----HH---------HHHHHHHHh
Confidence 1111111 1278899999999999998755322111 11 222222222
Q ss_pred Hhh--hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEE
Q 009282 403 TMV--ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEV 480 (538)
Q Consensus 403 ~~~--~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 480 (538)
+.. ...++|++++|+++|.|||+++|+++++|+|++||.|||||||.++++..+..+..+ ...|... ..+|..
T Consensus 356 ~~~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~~~~---~~~~~~~--~~~v~~ 430 (468)
T 3lnp_A 356 KGVSQDASAIPAIEALTMATLGGARALGIDDITGSLKPGKAADIQAIDLNTLSSQPVFDPVS---HMVYCTK--STQVSH 430 (468)
T ss_dssp HHHHTCTTSSCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSCHHH---HHHHSCC--GGGEEE
T ss_pred hhccCCCCcCCHHHHHHHHHHHHHHHhCCCCCccccCCCCcCCEEEEeCCCCccCCccCHHH---HhhccCC--CCCceE
Confidence 222 256799999999999999999999888999999999999999999876554321110 1112111 368999
Q ss_pred EEECCEEEEECCeeeccC
Q 009282 481 TIAGGRVVWENDELNVVP 498 (538)
Q Consensus 481 V~v~G~~V~~~~~~~~~~ 498 (538)
||++|++||++|++++.|
T Consensus 431 v~v~G~~v~~~g~~~~~d 448 (468)
T 3lnp_A 431 VWVNGRCLLKNGELTTLN 448 (468)
T ss_dssp EEETTEEEEETTEESSSC
T ss_pred EEECCEEEEECCeECCCC
Confidence 999999999999999987
|
| >4dyk_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO PSI-biology, NEW YORK structural genomics research consorti hydrolase; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-41 Score=346.64 Aligned_cols=382 Identities=16% Similarity=0.192 Sum_probs=259.0
Q ss_pred cCcccEEEECcEEEcCCC----ceeeeEEEeCCEEEEecCCCC--CCCCceEEecCCCeeeccccccccccccccCC---
Q 009282 50 QSSSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNIN--VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG--- 120 (538)
Q Consensus 50 ~~~~~~~i~n~~vv~~~~----~~~~~V~I~~grI~~Vg~~~~--~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~--- 120 (538)
.++++++|+|++|+++++ .++++|+|+||||++||+... .+++.++||++|++|+|||||+|+|+......
T Consensus 5 ~~~~~~li~~~~v~~~~~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~ 84 (451)
T 4dyk_A 5 RNPFDLLLLPTWIVPVEPAGVVLRDHALGIRDGQIALVAPREQAMRHGATEIRELPGMLLAPGLVNAHGHSAMSLFRGLA 84 (451)
T ss_dssp -CCEEEEEEEEEECCSSSTTCCEESEEEEEETTEEEEEEEHHHHTTTCEEEEEEEEEEEEEECEEECCCCGGGGGGTTSS
T ss_pred cchhcEEEECCEEEeeCCCCcEEeccEEEEECCEEEEEeCccccccCCCCeEEeCCCCEEeecccchhhChhhHHhccCC
Confidence 446789999999999663 268999999999999997542 23468999999999999999999999655221
Q ss_pred -------------------CCChhhHHHHH----HHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee
Q 009282 121 -------------------SETIDDFFSGQ----AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI 177 (538)
Q Consensus 121 -------------------~~~~~~~~~~~----~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (538)
..++++++... ..++++||||++|+... .....+...+.+.+..+..+.....
T Consensus 85 ~~~~l~~wl~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~a~~~~g~r~~~~~~~~~~~ 160 (451)
T 4dyk_A 85 DDLPLMTWLQDHIWPAEGQWVSEDFIRDGTELAIAEQVKGGITCFSDMYFY----PQAICGVVHDSGVRAQVAIPVLDFP 160 (451)
T ss_dssp CSSCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECSC----HHHHHHHHHHHTCEEEEEEEECSSC
T ss_pred CCCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHcCCeEEEEchhhCCC
Confidence 12344444333 34569999999998432 2334444455554444333322111
Q ss_pred e---cCChhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcC
Q 009282 178 T---KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELG 252 (538)
Q Consensus 178 ~---~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g 252 (538)
. ...++.+++..++.+. .+...+++...++..+.++.+.++++++.|+++|+++++|+.+. ..+...++ ..|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~---~~g 237 (451)
T 4dyk_A 161 IPGARDSAEAIRQGMALFDDLKHHPRIRIAFGPHAPYTVSDDKLEQILVLTEELDASIQMHVHETAFEVEQAME---RNG 237 (451)
T ss_dssp BTTBSSHHHHHHHHHHHHHHTTTCSSEEEEEEECCGGGSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HHS
T ss_pred CccccCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCccCHHHHHHHHHHHHHcCCcEEEEeCCCHHHHHHHHH---HhC
Confidence 1 1123444555555433 36677888888888888899999999999999999999999554 33333322 223
Q ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcc
Q 009282 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~ 332 (538)
... ++ .+......+.++.+.|+...+. +.++++++.|+.++.||... +.
T Consensus 238 ~~~----------------i~-~~~~~g~~~~~~~~~H~~~~~~-~~~~~l~~~g~~v~~~p~s~-------------~~ 286 (451)
T 4dyk_A 238 ERP----------------LA-RLHRLGLLGPRFQAVHMTQVDN-DDLAMLVETNSSVIHCPESN-------------LK 286 (451)
T ss_dssp SCH----------------HH-HHHHTTCCSTTEEEEECCCCCH-HHHHHHHHHTCEEEECHHHH-------------HH
T ss_pred CCH----------------HH-HHHHCCCCCCCeEEEECCCCCH-HHHHHHHHcCCEEEEChhhh-------------hh
Confidence 210 11 1122233567888999998877 88999999999998887642 11
Q ss_pred cccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCC
Q 009282 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQI 410 (538)
Q Consensus 333 ~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~l 410 (538)
.+... +| ++.+++.|+++++|||+.+.+....+ +. +........+.. ...++
T Consensus 287 ~~~~~---~~---------~~~~~~~Gv~v~lgtD~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~ 340 (451)
T 4dyk_A 287 LASGF---CP---------VEKLWQAGVNVAIGTDGAASNNDLDL-----LG---------ETRTAALLAKAVYGQATAL 340 (451)
T ss_dssp TTCCC---CC---------HHHHHHHTCCEEECCCCGGGSSCCCH-----HH---------HHHHHHHHHHHHHTCTTSS
T ss_pred ccCCc---cc---------HHHHHhCCCeEEEECCCCccCCCCCH-----HH---------HHHHHHHHhhhhcCCCCCC
Confidence 11111 12 78899999999999998754322111 11 222222222222 24579
Q ss_pred CHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeE---EeeEEEEEEECCEE
Q 009282 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR---VKGKVEVTIAGGRV 487 (538)
Q Consensus 411 s~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~V~v~G~~ 487 (538)
|++++|+++|.|||+++|+++++|+|++||.|||||||.+++...+. ..|+.... ...+|..||++|++
T Consensus 341 ~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvv~d~~~~~~~~~--------~~~~~~~~~~~~~~~v~~v~v~G~~ 412 (451)
T 4dyk_A 341 DAHRALRMATLNGARALGLERLIGSLEAGKAADLVAFDLSGLAQQPV--------YDPVSQLIYASGRDCVRHVWVGGRQ 412 (451)
T ss_dssp CHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEEECCSGGGCSC--------SCHHHHHHHHCCGGGEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHcCCCCCCcCcCCCCcCCEEEEeCCCCccCCC--------CCHHHHhhccCCCCCccEEEECCEE
Confidence 99999999999999999998889999999999999999987654332 12222210 13579999999999
Q ss_pred EEECCeeeccCCCceEe
Q 009282 488 VWENDELNVVPGSGKYI 504 (538)
Q Consensus 488 V~~~~~~~~~~~~~~~~ 504 (538)
||++|++++.| .++.+
T Consensus 413 v~~~g~~~~~d-~~~~~ 428 (451)
T 4dyk_A 413 LLDDGRLLRHD-EQRLI 428 (451)
T ss_dssp EEETTEESSSC-HHHHH
T ss_pred EEECCEECcCC-HHHHH
Confidence 99999999987 44443
|
| >4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK structural genomics research consortium; 1.55A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=346.34 Aligned_cols=378 Identities=19% Similarity=0.219 Sum_probs=255.6
Q ss_pred cccEEEECcEEEcCCC----ceeeeEEEeCCEEEEecCCCCCC---CCceEEecCCCeeeccccccccccccccCC----
Q 009282 52 SSKILIKGGTVVNAHH----QQIADVYVEDGIVVAVQPNINVG---DDVKVLDATGKFVMPGGIDPHTHLAMEFMG---- 120 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~----~~~~~V~I~~grI~~Vg~~~~~~---~~~~vID~~G~~v~PGlID~H~H~~~~~~~---- 120 (538)
+++++|+|++|+++++ .++++|+|+||||++||+....+ ++.++||++|++|+|||||+|+|+......
T Consensus 13 ~~d~li~~~~v~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~viD~~g~~v~PGlID~H~Hl~~~~~~g~~~ 92 (472)
T 4dzh_A 13 PCDLLIEAGYVVPIEPHAVVLEDHAVAVSNGVIVAVLPTADARVRFAPARTVSRPDAALMPGLVNAHTHNPMTLLRGVAD 92 (472)
T ss_dssp EEEEEEEEEEECCSSSTTCCEEEEEEEEETTEEEEEEEHHHHHHHEEEEEEEEEEEEEEEECEEEEEECGGGGGGTTSSC
T ss_pred cCcEEEECCEEEecCCCCcEecceEEEEECCEEEEEeCchhhhhcCCCCeEEeCCCcEEEECccccccChhhHHhccccC
Confidence 4789999999998763 36899999999999999854332 357899999999999999999999775211
Q ss_pred ------------------CCChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee-
Q 009282 121 ------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI- 177 (538)
Q Consensus 121 ------------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 177 (538)
..++++++. ....++++||||++|+... .....+...+.+.+..+..+.....
T Consensus 93 ~~~l~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~a~~~~g~r~~~~~~~~~~~~ 168 (472)
T 4dzh_A 93 DLPLMVWLQQHIWPVEAAVIGPEFVADGTTLAIAEMLRGGTTCVNENYFF----ADVQAAVYKQHGFRALVGAVIIDFPT 168 (472)
T ss_dssp SCCHHHHHHHTHHHHHHHHCSHHHHHHHHHHHHHHHHHTTEEEEEEECSC----HHHHHHHHHHTTCEEEEEEEECSSCC
T ss_pred CCCHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHhCCcEEEEEcccC----HHHHHHHHHHhCCeEEEEecccCCCc
Confidence 123333332 2344789999999998622 2334444455554444433332111
Q ss_pred --ecCChhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCC
Q 009282 178 --TKWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGI 253 (538)
Q Consensus 178 --~~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~ 253 (538)
....++.+++..++.+. .+...+++...++..+.++.+.++++++.|+++|+++++|+.+. .+....++ ..|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~iH~~e~~~~~~~~~~---~~g~ 245 (472)
T 4dzh_A 169 AWASSDDEYFARAGELHDQWRDDPLISTAFAPHAPYTVNDANFERVRMLADQLDMPVHLHTHETAQEVADSVA---QYGQ 245 (472)
T ss_dssp SSCSSHHHHHHHHHHHHHHHTTCSSEEEEEEECCTTTSCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HHSS
T ss_pred ccccCHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH---HhCC
Confidence 11123445555555433 35667788888888888899999999999999999999999543 33333322 2232
Q ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccc
Q 009282 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVT 333 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~ 333 (538)
. .+. .+......+.++.+.|+...+. +.++++++.|+.++.||... +..
T Consensus 246 ~----------------~i~-~~~~~g~~~~~~~~~H~~~l~~-~~i~~l~~~g~~v~~~p~s~-------------~~~ 294 (472)
T 4dzh_A 246 R----------------PLA-RLDRLGLVNDRLIAVHMTQLTE-AEIHLCAERGVSVVHCPESN-------------LKL 294 (472)
T ss_dssp C----------------HHH-HHHHHTCCSTTEEEEECCSCCH-HHHHHHHHHTCEEEECHHHH-------------HHT
T ss_pred C----------------HHH-HHHHcCCCCCCeEEEeccCCCH-HHHHHHHHcCCEEEEChHHH-------------Hhc
Confidence 1 111 1222334567888999998877 88999999999998887642 111
Q ss_pred ccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh--hcCCCC
Q 009282 334 AAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV--ESGQIS 411 (538)
Q Consensus 334 ~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~--~~~~ls 411 (538)
+.+. .+++.++++|+++++|||+...+....+ +. +......+.+.. ...++|
T Consensus 295 ~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~~~~~-----~~---------~~~~a~~~~~~~~~~~~~l~ 348 (472)
T 4dzh_A 295 ASGF------------CPACALQRASVNLAIGTDGCASNNDLDM-----FS---------ENRTAAILAKAVANDATALD 348 (472)
T ss_dssp TCCC------------CCHHHHHHTTCEEEECCCCTTSSCCCCH-----HH---------HHHHHHHHHHHHHTCTTSSC
T ss_pred CCCC------------ccHHHHHHCCCCEEEECCCCcCCCCCCH-----HH---------HHHHHHHHhhhhcCCCCcCC
Confidence 1111 1278899999999999998654322111 11 222222222221 345799
Q ss_pred HHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 412 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 412 ~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
++++|+++|.|||+++|+++++|+|++||.|||||+|.+++...+..+ +.....|.+. ..+|..||++|++||++
T Consensus 349 ~~~al~~~T~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~~~~~~---~~~~l~~~~~--~~~V~~v~v~G~~v~~~ 423 (472)
T 4dzh_A 349 AATTLRAATLGGARALGFGDRIGSIEVGKQADLVCVDLSALETQPLHH---VLSQLIYAAG--RHQVTDVWIAGKPKLVQ 423 (472)
T ss_dssp HHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEEECCSGGGCSCSC---HHHHHHHTCC--GGGEEEEEETTEEEEET
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcccCCCCcCCEEEEcCCCCccCCccC---HHHHHhhcCC--CCCceEEEECCEEEEEC
Confidence 999999999999999999888999999999999999998775433211 0001112211 35799999999999999
Q ss_pred CeeeccC
Q 009282 492 DELNVVP 498 (538)
Q Consensus 492 ~~~~~~~ 498 (538)
|++++.|
T Consensus 424 g~~~~~d 430 (472)
T 4dzh_A 424 RELIDMD 430 (472)
T ss_dssp TEETTCC
T ss_pred CEECcCC
Confidence 9999987
|
| >3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=342.51 Aligned_cols=361 Identities=18% Similarity=0.156 Sum_probs=235.4
Q ss_pred cccEEEECcEEEcCCCc---eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCC-----CCC
Q 009282 52 SSKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SET 123 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~---~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~-----~~~ 123 (538)
+.+++|+|++|+|+++. ++++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+...... ..+
T Consensus 3 ~~~~~i~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~ 82 (423)
T 3feq_A 3 LTITVLQGGNVLDLERGVLLEHHHVVIDGERIVEVTDRPVDLPNAQAIDVRGKTVMPGFIDCHVHVLASNANLGVNATQP 82 (423)
T ss_dssp -CEEEEEEEEEEETTTTEEEEEEEEEEETTEEEEEECSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSC
T ss_pred ceEEEEEccEEEeCCCCcccCCceEEEECCEEEEecCCCCCCCCCeEEeCCCCEECCCeeeeEeeecccCCChhhhhcCC
Confidence 45799999999998753 5789999999999999865556678999999999999999999999876221 011
Q ss_pred hhhH----HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeee-------------------------
Q 009282 124 IDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH------------------------- 174 (538)
Q Consensus 124 ~~~~----~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 174 (538)
++.. ...++.++++||||++|++.... ...+.++.....+++.+......
T Consensus 83 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~~~~~~~~g~r~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 161 (423)
T 3feq_A 83 NILAAIRSLPILDAMLSRGFTSVRDAGGADW-SLMQAVETGLVSGPRIFPSGKALSQTGGHGDFRPRGDLLEPCSCCFRT 161 (423)
T ss_dssp HHHHHHTHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCSCEEECCCSEEECTTSTTCCCCC---CCCCCSSCCT
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCcccccCCCCccccccccccccccccccc
Confidence 1111 23456679999999999864321 22222222211122211110000
Q ss_pred ---eeeecCChhhHHHHHHHHHHcCCcEEEEEee--------eCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHH
Q 009282 175 ---MAITKWDEVVSDEMEVMVKEKGINSFKFFMA--------YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFE 243 (538)
Q Consensus 175 ---~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~--------~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~ 243 (538)
.......++..+.++++. +.|++.+|++.+ +++...++.+.++++++.|+++|+++.+|+.+...+..
T Consensus 162 ~~~~~~~~~~~~~~~~v~~~~-~~g~~~ik~~~~g~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~ 240 (423)
T 3feq_A 162 GAIARVVDGVEGVRLAVREEI-QKGATQIKIMASGGVASPTDPIANTQYSEDEIRAIVDEAEAANTYVMAHAYTGRAIAR 240 (423)
T ss_dssp TCSEEECCSHHHHHHHHHHHH-HTTCSSEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCCEEEEEEEHHHHHH
T ss_pred cccceecCCHHHHHHHHHHHH-HcCCCEEEEeccCCcCCCCCCcccccCCHHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence 011122234555666666 679999999876 34455789999999999999999999999986543332
Q ss_pred HHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCc
Q 009282 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (538)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~ 323 (538)
.+ +.|. + .+.|+...+. +.++++++.|+.++.+.......+..
T Consensus 241 ~l----~~g~-------------------------------~-~i~H~~~~~~-~~~~~l~~~gv~~~pt~~~~~~~~~~ 283 (423)
T 3feq_A 241 AV----RCGV-------------------------------R-TIEHGNLVDE-AAAKLMHEHGAFVVPTLVTYDALAKH 283 (423)
T ss_dssp HH----HHTC-------------------------------C-EEEEEEECCH-HHHHHHHHHTCEEECCTHHHHHHHHH
T ss_pred HH----HcCC-------------------------------C-EEeccCcCCH-HHHHHHHHCCCccccchHHHHHHHhc
Confidence 22 2232 2 4778776665 88899999998876553332111110
Q ss_pred ccccCCCcccccceeecCCCCCc------ccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhH
Q 009282 324 SWLWHSDFVTAAKYVMSPPIRAS------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERM 397 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~p~~r~~------~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 397 (538)
. ......|..+.. ....+++.++++|+++++|||+...... ..
T Consensus 284 ~----------~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~gTD~~~~~~~---------------------~~ 332 (423)
T 3feq_A 284 G----------AEFGMPPESVAKVASVQQKGRESLEIYANAGVKMGFGSDLLGEMHA---------------------FQ 332 (423)
T ss_dssp T----------GGGTCCTTTSSTHHHHHHHHHHHHHHHHHHTCCBCCCCCCCGGGGG---------------------GT
T ss_pred c----------cccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCc---------------------ch
Confidence 0 000111111111 1345678899999999999997532111 00
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeE
Q 009282 398 HLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGK 477 (538)
Q Consensus 398 ~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (538)
...+. ..... +|++|||+++|.|||+++|+++++|+|++||.|||||+|.|++.++.. +... ..+
T Consensus 333 ~~e~~-~~~~~-ls~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvv~d~~p~~~~~~-----------~~~~--~~~ 397 (423)
T 3feq_A 333 SGEFR-IRAEV-LGNLEALRSATTVAAEIVNMQGQLGVIAVGAIADLVVLDGNPLEDIGV-----------VADE--GAR 397 (423)
T ss_dssp THHHH-HHHTT-SCHHHHHHTTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTTCGGG-----------TSSS--TTS
T ss_pred HHHHH-HHHhh-CCHHHHHHHHHHHHHHHhCCCCCceeECCCCcCCEEEECCChhhCHHH-----------Hhcc--CCC
Confidence 11121 22344 999999999999999999998889999999999999999987644321 1100 147
Q ss_pred EEEEEECCEEEEECCeeecc
Q 009282 478 VEVTIAGGRVVWENDELNVV 497 (538)
Q Consensus 478 v~~V~v~G~~V~~~~~~~~~ 497 (538)
|..||++|++|+++++..+-
T Consensus 398 v~~v~~~G~~v~~~~~~~~~ 417 (423)
T 3feq_A 398 VEYVLQRGTLVKRQAAGREG 417 (423)
T ss_dssp EEEEEETTEEEEEC------
T ss_pred ceEEEECCEEEeCCcccccc
Confidence 99999999999999887654
|
| >2r8c_A Putative amidohydrolase; unknown source, sargasso SEA, structural genomics, protein structure initiative, PSI; 2.31A {Unidentified} PDB: 3mkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=341.19 Aligned_cols=367 Identities=16% Similarity=0.172 Sum_probs=238.6
Q ss_pred cccEEEECcEEEcCCCc---eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCC-----CCC
Q 009282 52 SSKILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-----SET 123 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~---~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~-----~~~ 123 (538)
+++++|+|++|+++++. ++++|+|+||||++|++....+.+.++||++|++|+|||||+|+|+...... ..+
T Consensus 3 m~~~~i~n~~i~~~~~~~~~~~~~i~i~~g~I~~i~~~~~~~~~~~~iD~~g~~v~PGliD~H~H~~~~~~~~~~~~~~~ 82 (426)
T 2r8c_A 3 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLP 82 (426)
T ss_dssp -CEEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHHHSC
T ss_pred cccEEEEeeEEEeCCCCcccCCceEEEECCEEEEEcCCCCCCCCCeEEECCCCEEcCCeEeeeeccccccCCchhhccCC
Confidence 45789999999998642 5789999999999999865556678999999999999999999999876221 012
Q ss_pred hhhH----HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeee-------------------------
Q 009282 124 IDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH------------------------- 174 (538)
Q Consensus 124 ~~~~----~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 174 (538)
.+.. ...++.++++||||++|++.... ...+.++.....+++........
T Consensus 83 ~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~-~l~~~i~~~~~~gpri~~~g~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 161 (426)
T 2r8c_A 83 NVLVTLRAVPIMRAMLRRGFTTVRDAGGAGY-PFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSPCGCC 161 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEECSSCCH-HHHHHHHTTSSCCCEEEECCSEEECTTSTTCCCCCSSBCCCSCSSSSB
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeCCCchH-HHHHHHHcCCCCCCeEEecCCcccCCCCCccccccccccccccccccc
Confidence 2222 12345679999999999965421 12222222111122211110000
Q ss_pred ------eeeecCChhhHHHHHHHHHHcCCcEEEEEee--------eCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009282 175 ------MAITKWDEVVSDEMEVMVKEKGINSFKFFMA--------YKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (538)
Q Consensus 175 ------~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~--------~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (538)
.......++..+.+++.. +.|++.+|++.+ +++...++.+.++++++.|+++|+++.+|+.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~v~~~~-~~g~~~ik~~~~G~~~~~~~p~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (426)
T 2r8c_A 162 VRVGALGRVADGVDEVRRAVREEL-QMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAYTPAA 240 (426)
T ss_dssp CCTTCCEEECCSHHHHHHHHHHHH-HHTCSSEEEECBCCSSSSSCCSSCBCSCHHHHHHHHHHHHHTTCCEEEEECSHHH
T ss_pred ccccccccccCCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCCCCcccccCCHHHHHHHHHHHHHcCCEEEEEeCChHH
Confidence 011122244556666666 679999999876 33445789999999999999999999999986644
Q ss_pred HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccc
Q 009282 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (538)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~ 320 (538)
+...+ +.|. + .+.|+...+. +.++++++.|+.++.+.......
T Consensus 241 i~~al----~~G~-------------------------------~-~i~H~~~~~~-~~~~~~~~~gv~~~pt~~~~~~~ 283 (426)
T 2r8c_A 241 IARAV----RCGV-------------------------------R-TIEHGNLIDD-ETARLVAEHGAYVVPTLVTYDAL 283 (426)
T ss_dssp HHHHH----HTTC-------------------------------S-EEEECTTCCH-HHHHHHHHTTCEEECCTHHHHHH
T ss_pred HHHHH----HcCC-------------------------------C-EEecCCcCCH-HHHHHHHHcCCeEeechHHHHHH
Confidence 33222 2332 2 4889888776 88999999998886553332211
Q ss_pred cCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHH
Q 009282 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 400 (538)
+...... .+. .................++.++++|+++++|||+.+.... .....
T Consensus 284 ~~~~~~~--~~~--p~~~~~~~~~~~~~~~~~~~~~~~Gv~v~lgTD~~~~~~~---------------------~~~~e 338 (426)
T 2r8c_A 284 ASEGEKY--GLP--PESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQR---------------------LQSDE 338 (426)
T ss_dssp HHHTTTT--TCC--HHHHTTSTTTGGGHHHHHHHHHHTTCEECCCCCCCGGGGG---------------------GTTHH
T ss_pred hhhcccc--CCC--HHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCCc---------------------chHHH
Confidence 1100000 000 0000000000112356688999999999999997532111 00111
Q ss_pred HHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEE
Q 009282 401 WDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEV 480 (538)
Q Consensus 401 ~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 480 (538)
+. ..... +|++|||+++|.|||+++|+++++|+|++||.|||||||.|++.++.. +.+. ..+|..
T Consensus 339 ~~-~~~~~-l~~~eal~~aT~~~A~~lg~~~~~G~i~~G~~ADlvvld~~p~~~~~~-----------~~~~--~~~v~~ 403 (426)
T 2r8c_A 339 FR-ILAEV-LSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDC-----------LLGQ--GEHIPL 403 (426)
T ss_dssp HH-HHTTT-SCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGGG-----------TCSS--STTCCE
T ss_pred HH-HHHhc-CCHHHHHHHHHHHHHHHhCCCCCCccCCCCCcCCEEEECCChHhCHHH-----------HhCc--CCcceE
Confidence 21 22344 999999999999999999998889999999999999999987654421 1100 147999
Q ss_pred EEECCEEEEECCeeecc
Q 009282 481 TIAGGRVVWENDELNVV 497 (538)
Q Consensus 481 V~v~G~~V~~~~~~~~~ 497 (538)
||++|++|+++.+....
T Consensus 404 v~~~G~~v~~~~~~~~~ 420 (426)
T 2r8c_A 404 VMKDGRLFVNELEGHEG 420 (426)
T ss_dssp EEETTEEEEETTC----
T ss_pred EEECCEEEecccccccc
Confidence 99999999999877653
|
| >3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A {Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=340.03 Aligned_cols=378 Identities=17% Similarity=0.162 Sum_probs=250.2
Q ss_pred EEEECc-EEEcCCC----ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCC---------
Q 009282 55 ILIKGG-TVVNAHH----QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG--------- 120 (538)
Q Consensus 55 ~~i~n~-~vv~~~~----~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~--------- 120 (538)
++|+|+ .|+++++ .++++|+|+||||++||+..+.+++.++||++|++|+|||||+|+|+......
T Consensus 2 ~li~n~~~v~t~d~~~~~~~~~~v~i~~g~I~~vg~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~~~~~g~~~~~~~~ 81 (456)
T 3ls9_A 2 ILIRGLTRVITFDDQERELEDADILIDGPKIVAVGKDLSDRSVSRTIDGRGMIALPGLINSHQHLYEGAMRAIPQLERVT 81 (456)
T ss_dssp EEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEESSCCCTTCSEEEECTTEEEEECEEEEEECGGGGGGBTCGGGSSCC
T ss_pred EEEEcCcEEEEcCCCCceeccceEEEECCEEEEeCCCCCCCCCCeEEeCCCCEEecCeeecccccchhhhcccccCCCCC
Confidence 689999 7888775 26899999999999999876545678999999999999999999999755221
Q ss_pred -------------------CCChhhHHH----HHHHHHhCCcEEEecccCCCCC-----CHHHHHHHHHHHhcccceeee
Q 009282 121 -------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMDYG 172 (538)
Q Consensus 121 -------------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 172 (538)
..++++++. ....++++||||+.++...... .....++...+.+.+..+..+
T Consensus 82 l~~~l~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~ 161 (456)
T 3ls9_A 82 MASWLEGVLTRSAGWWRDGKFGPDVIREVARAVLLESLLGGITTVADQHLFFPGATADSYIDATIEAATDLGIRFHAARS 161 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHTTEEEEEEEECCCCSSSCCTHHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHhccccccccccccCCHHHHHHHHHHHHHHHHhCCeeEEEeccccccCcccchhHHHHHHHHHHcCCEEEEEcc
Confidence 122222222 2344689999999998432221 233335555555544333322
Q ss_pred eeee-----------eecCChhhHHHHHHHHHH-cC---CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 173 FHMA-----------ITKWDEVVSDEMEVMVKE-KG---INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 173 ~~~~-----------~~~~~~~~~~~~~~~~~~-~g---~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
.... .....++.+++..++.+. .+ ...++....+++.+.++.+.++++++.|+++|+++++|+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e 241 (456)
T 3ls9_A 162 SMTLGKSEGGFCDDLFVEPVDRVVQHCLGLIDQYHEPEPFGMVRIALGPCGVPYDKPELFEAFAQMAADYDVRLHTHFYE 241 (456)
T ss_dssp CCCCCGGGTCSSCGGGCCCHHHHHHHHHHHHHHHCCCSTTCSEEEEECCCCTTTSCHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred ccccccccccCCccccccCHHHHHHHHHHHHHHhhCcCCCCceEEEEecCCCCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 2111 001123344555555433 23 45566777777778889999999999999999999999965
Q ss_pred hhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccc
Q 009282 238 GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (538)
Q Consensus 238 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~ 317 (538)
........+ ..|.. ..+.+......+.++.+.|+...+. +.++++++.|+.++.||...
T Consensus 242 ~~~~~~~~~---~~~~~-----------------~~~~~~~~g~~~~~~~i~H~~~~~~-~~~~~l~~~g~~~~~~p~s~ 300 (456)
T 3ls9_A 242 PLDAGMSDH---LYGMT-----------------PWRFLEKHGWASDRVWLAHAVVPPR-EEIPEFADAGVAIAHLIAPD 300 (456)
T ss_dssp TTHHHHHHH---HHSSC-----------------HHHHHHHTTCSSTTEEEEECCSCCG-GGHHHHHHHTCEEEECHHHH
T ss_pred CchHHHHHH---HhCCC-----------------HHHHHHHcCCCCCCcEEEeccCCCH-HHHHHHHHcCCEEEEChhHH
Confidence 543222222 22221 0111222233456788999988776 78999999999999888652
Q ss_pred ccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhH
Q 009282 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERM 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 397 (538)
+..+... .+++.++++|+++++|||+.+.+....+ +. ++..
T Consensus 301 -------------~~l~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~~~~~-----~~---------~~~~ 341 (456)
T 3ls9_A 301 -------------LRMGWGL------------APIREYLDAGITVGFGTTGSASNDGGNL-----LG---------DLRL 341 (456)
T ss_dssp -------------HHTTCCC------------CCHHHHHHTTCEEEECCCCTTSSCCCCH-----HH---------HHHH
T ss_pred -------------hhcCCCc------------chHHHHHHCCCcEEEECCCCccCCCCCH-----HH---------HHHH
Confidence 1111111 1278899999999999998754322111 10 1222
Q ss_pred HHHHHHhhhcC----CCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeE
Q 009282 398 HLVWDTMVESG----QISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473 (538)
Q Consensus 398 ~~~~~~~~~~~----~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (538)
........... ++|++++|+++|.|||+++|+++ +|+|++||.|||||||.+++...+..+. .....|.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~al~~~T~~~A~~lg~~~-~G~l~~G~~ADlvv~d~~~~~~~~~~~~---~~~~~~~~~- 416 (456)
T 3ls9_A 342 AALAHRPADPNEPEKWLSARELLRMATRGSAECLGRPD-LGVLEEGRAADIACWRLDGVDRVGVHDP---AIGLIMTGL- 416 (456)
T ss_dssp HHHHTGGGSTTCGGGSCCHHHHHHHTTHHHHHHTTCTT-SSCCSTTSBCCEEEEESCSGGGTTBSSH---HHHHHHCCS-
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHHHhCCCC-CCccCCCCccCEEEEeCCCCccCCCCCh---HHHhhccCC-
Confidence 22221111111 69999999999999999999976 9999999999999999987755432110 000112221
Q ss_pred EeeEEEEEEECCEEEEECCeeeccC
Q 009282 474 VKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 474 ~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
..+|..||++|++||++|+++..|
T Consensus 417 -~~~v~~v~v~G~~v~~~g~~~~~d 440 (456)
T 3ls9_A 417 -SDRASLVVVNGQVLVENERPVLAD 440 (456)
T ss_dssp -BCCCSEEEETTEEEEETTEESSSC
T ss_pred -CCCeeEEEECCEEEEECCEeCCCC
Confidence 357999999999999999999987
|
| >3gip_A N-acyl-D-glutamate deacylase; amidohydrolase family, hydrolase; 1.50A {Bordetella bronchiseptica} PDB: 3giq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=333.44 Aligned_cols=392 Identities=18% Similarity=0.166 Sum_probs=276.1
Q ss_pred CcccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHH
Q 009282 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (538)
Q Consensus 51 ~~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~ 128 (538)
|+++++|+|++|+++++ ...++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+....... +.
T Consensus 5 ~~~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~v~PG~iD~H~H~~~~~~~~--~~--- 78 (480)
T 3gip_A 5 EKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGA-HPARHAWDASGKIVAPGFIDVHGHDDLMFVEK--PD--- 78 (480)
T ss_dssp CCEEEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCEEEEEECTTSEEEECEEESSCCCTTHHHHS--TT---
T ss_pred ccCCEEEECcEEECCCCCeeeeeEEEEECCEEEEecCCCC-CCCCeEEECCCCEEccCEEeccccccccccCC--hh---
Confidence 46789999999999876 378999999999999998643 44678999999999999999999986541111 11
Q ss_pred HHHHHHHhCCcEEEecc---------cCCCCC-CH---------HHHHHHHHHHh--cccceeeeeeeeee---------
Q 009282 129 SGQAAALAGGTTMHIDF---------VIPING-SL---------TAGFEAYEKKA--KNSCMDYGFHMAIT--------- 178 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~---------~~~~~~-~~---------~~~~~~~~~~~--~~~~~~~~~~~~~~--------- 178 (538)
....+++||||+++. ...... .. ++.+..+.... ....++++++.+..
T Consensus 79 --~~~~~~~G~Tt~~~g~cG~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~g~ 156 (480)
T 3gip_A 79 --LRWKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRD 156 (480)
T ss_dssp --CHHHHTTTEEEEEECCTTCCSCSCCCTTCCCGGGGGTCSSCCCSSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSS
T ss_pred --HHHHhcCCeeEEEecCCCcCCCCCCcccchhhhhhhhccCccccCHHHHHHHHHhCCCCceEEEccccHHHHHHhcCC
Confidence 234599999999983 110000 00 11233333322 23566777665332
Q ss_pred ---cCChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcC
Q 009282 179 ---KWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (538)
Q Consensus 179 ---~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g 252 (538)
..+.+.+.++.++.+ +.|+.+++.+..|......+.+++.++++.++++|.++.+|+++...
T Consensus 157 ~~~~~~~~~l~~m~~l~~~~~~~Ga~g~~~~~~y~p~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~------------ 224 (480)
T 3gip_A 157 PQAAPTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPGAVAQAAELEGLARVAAERRRLHTSHIRNEAD------------ 224 (480)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSTTGGGCCHHHHHHHHHHHHHTTCEEEEECSCSST------------
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCcEEeecCccCCcccCCHHHHHHHHHHHHHcCCEEEEEecCccc------------
Confidence 234556677776664 57999999988776555568899999999999999999999976421
Q ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccC---------HHHHHHHHHHHHcCCcEEEeccccccccCc
Q 009282 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS---------MDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~---------~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~ 323 (538)
.+.+++.+++.++.+.+.++++.|++. ...++.++.+++.|+.|+++.+++++....
T Consensus 225 --------------~~~~a~~e~i~la~~~g~~v~i~H~s~~~~~~~~~~~~~l~~i~~a~~~G~~Vt~e~~p~~~~~t~ 290 (480)
T 3gip_A 225 --------------GVEAAVEEVLAIGRGTGCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTI 290 (480)
T ss_dssp --------------THHHHHHHHHHHHHHHCCEEEETTCCCCSGGGTTTHHHHHHHHHHHHHTTCCEEEEECSCSCEEEE
T ss_pred --------------cHHHHHHHHHHHHHHhCCCEEEEEEeccCccchhhHHHHHHHHHHHHHcCCceEEEeeccccCcch
Confidence 124678888899999999999999983 667788999999999999999999887765
Q ss_pred ccccCCCcccccceeec-------CCCCC-----------cccHHHHHHHH-----------------hcCCceEEeCCC
Q 009282 324 SWLWHSDFVTAAKYVMS-------PPIRA-----------SGHNKALQAAL-----------------ATGILQLVGTDH 368 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-------p~~r~-----------~~~~~~l~~~l-----------------~~Gv~~~lgtD~ 368 (538)
..+.+.. ...++. |+++. ....+.+.+++ ..+....+|||+
T Consensus 291 ~~l~~~~----~~~~~~~~~~~~~p~~~g~~~~~ia~~~~~~~~~a~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~gsD~ 366 (480)
T 3gip_A 291 LIPERAE----TIDDIRITWSTPHPECSGEYLADIAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDG 366 (480)
T ss_dssp CCGGGTT----TSSCCEEEEESSCGGGTTCBHHHHHHHHTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCC
T ss_pred hhhcCHH----HHHHHhhccccCCCccCCCcHHHHHHHcCCCHHHHHHHhccCCeEEEeCCHHHHHHHHcCCCeEEecCC
Confidence 5443322 222333 55533 12233333222 234456677886
Q ss_pred CCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh-cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEE
Q 009282 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIF 447 (538)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~-~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvl 447 (538)
.+... ....+....++..+..++. .+.+|++++++++|.|||+++|++ ++|+|++|+.|||||+
T Consensus 367 ~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~t~~~a~~~g~~-~~G~l~~G~~AD~vv~ 431 (480)
T 3gip_A 367 LPNDA--------------RPHPRLWGSFTRVLGRYVREARLMTLEQAVARMTALPARVFGFA-ERGVLQPGAWADVVVF 431 (480)
T ss_dssp CTTCS--------------SCCTHHHHHHHHHHHCCCCCTCSSCHHHHHHHHTHHHHHHHTCT-TCSSCSTTSBCCEEEE
T ss_pred cccCC--------------CCChhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHcCCC-CCCccCCCCCCCEEEE
Confidence 54421 1122334456666655665 467999999999999999999994 5699999999999999
Q ss_pred cCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 448 NPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 448 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
|++...+.. .+.++ +.+ ...|.+||++|++||++|++++ .+|++|++.
T Consensus 432 d~~~~~~~~--~~~~~--~~~------~~~v~~v~v~G~~v~~~g~~~~--~~G~~lr~~ 479 (480)
T 3gip_A 432 DPDTVADRA--TWDEP--TLA------SVGIAGVLVNGAEVFPQPPADG--RPGQVLRAG 479 (480)
T ss_dssp CTTTCBCCC--CSSST--TCC------CBSEEEEEETTEEEESSCCSSS--CCCCBCCC-
T ss_pred cCccccCcc--ccccc--ccc------CCCccEEEECCEEEEECCeEcC--CCCcCcCCC
Confidence 998754321 11111 112 3469999999999999999998 599999863
|
| >2paj_A Putative cytosine/guanine deaminase; NYSGXRC, PSI-II, amidohydrolase, sargasso SEA, enviro sample, structural genomics; 2.70A {Unidentified} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=338.01 Aligned_cols=377 Identities=17% Similarity=0.174 Sum_probs=236.8
Q ss_pred cccEEEECcE-EEcCC--------CceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-CC
Q 009282 52 SSKILIKGGT-VVNAH--------HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-GS 121 (538)
Q Consensus 52 ~~~~~i~n~~-vv~~~--------~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~~ 121 (538)
+++++|+|++ |++++ ...+++|+|+||||++||+..+ ++++++||++|++|+|||||+|+|+..... +.
T Consensus 9 ~~~~li~n~~~i~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~-~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~g~ 87 (492)
T 2paj_A 9 QPSTLIRNAAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGALAP-RPGETIVDATDCVIYPAWVNTHHHLFQSLLKGE 87 (492)
T ss_dssp -CEEEEECBSEEBCCCCSSSSSCSBCCCCCEEEETTEEEEESSCCC-CTTCEEEECBTCEEEECEECCCCCGGGGGCCSC
T ss_pred CCCeEEECCEEEEecCCccccccceecccEEEEECCEEEEEcCCCC-CCCCeEEECCCcEEeeCccccccChhhHhhcCc
Confidence 4679999999 99986 2357899999999999998653 345789999999999999999999876521 10
Q ss_pred ----------------------CChhhHHHHHHH----HHhCCcEEEecccCCCCC-----CHHHHHHHHHHHhccccee
Q 009282 122 ----------------------ETIDDFFSGQAA----ALAGGTTMHIDFVIPING-----SLTAGFEAYEKKAKNSCMD 170 (538)
Q Consensus 122 ----------------------~~~~~~~~~~~~----~l~~GvTt~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 170 (538)
.+++++....+. ++++||||++|+...... ......+...+.+.+....
T Consensus 88 ~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~g~r~~~~ 167 (492)
T 2paj_A 88 PAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLL 167 (492)
T ss_dssp C-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCHHHHHHhcccchhhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhhcccccccchHHHHHHHHHHcCCEEEEE
Confidence 234555554455 899999999998632211 1222333333323222221
Q ss_pred eeeee-e------ee-----cCChhhHHHHHHHHHHc-CC---cEEEEEeeeCCC-ccCCHHHHHHHHHHHHhcCCeEEE
Q 009282 171 YGFHM-A------IT-----KWDEVVSDEMEVMVKEK-GI---NSFKFFMAYKGS-FMINDELLIEGFKRCKSLGALAMV 233 (538)
Q Consensus 171 ~~~~~-~------~~-----~~~~~~~~~~~~~~~~~-g~---~~ik~~~~~~~~-~~~~~~~l~~~~~~A~~~g~~v~~ 233 (538)
.+... . .. ...++.++++..+.+.. +. ..++++..+.+. ..++.+.++++++.|++.|+++.+
T Consensus 168 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~ 247 (492)
T 2paj_A 168 RGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHS 247 (492)
T ss_dssp ECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred chhhcccccccccCCccccccCHHHHHHHHHHHHHHhccCCCCCceEEEEecccCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 11110 0 00 00123455555665332 21 347777777766 678999999999999999999999
Q ss_pred EcCCh-hhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEE
Q 009282 234 HAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIG 312 (538)
Q Consensus 234 H~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~ 312 (538)
|+.+. .......+. +|.. .+..+. .....+.+..+.|+...+. +.++++++.|+.+..
T Consensus 248 H~~~~~~~~~~~~~~---~g~~----------------~~~~~~-~~g~~~~~~~i~H~~~~~~-~~i~~l~~~gv~v~~ 306 (492)
T 2paj_A 248 HLSETVGYQDSAYSM---YGKS----------------PVAFCG-EHDWLGSDVWYAHLVKVDA-DEIALLAQTGTGVAH 306 (492)
T ss_dssp ECC----------------CCC----------------HHHHHH-HTTCCSTTEEEESCCSCCH-HHHHHHHHHTCEEEE
T ss_pred EeCCChHHHHHHHHH---cCCC----------------HHHHHH-HCCCCCCCcEEEEEecCCH-HHHHHHHHcCCEEEE
Confidence 99763 223222211 1211 011111 1122344677899987766 779999999988777
Q ss_pred eccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcc
Q 009282 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g 392 (538)
+|... +..+. ..|| ++.++++|+++++|||+.+.+.... ++.
T Consensus 307 ~p~~~-------------~~l~~---~~~p---------~~~~~~~Gv~v~lgTD~~~~~~~~~-----~~~-------- 348 (492)
T 2paj_A 307 CPQSN-------------GRLGS---GICP---------VREMADAGVPVSIGVDGAASNEAAD-----MIS-------- 348 (492)
T ss_dssp CHHHH-------------HCC--------C---------CTTHHHHTCCEEECCCHHHHCSCCS-----HHH--------
T ss_pred Cchhh-------------cccCC---CCCC---------HHHHHHCCCcEEEeCCCCCCCCCCC-----HHH--------
Confidence 76431 11111 1123 4568899999999999754321111 111
Q ss_pred hhhhHHHHHHHh----------------hhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeec
Q 009282 393 IEERMHLVWDTM----------------VESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT 456 (538)
Q Consensus 393 ~~~~~~~~~~~~----------------~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~ 456 (538)
+......+... +..+++|++++|+++|.|||+++|++ ++|+|++||.|||||+|.|+++..+
T Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~al~~aT~~~A~~lgl~-~~Gsl~~Gk~ADlvvld~~~~~~~~ 426 (492)
T 2paj_A 349 -EVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGLD-EVGKVAVGYAADIAVYRLDDPRYFG 426 (492)
T ss_dssp -HHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTCT-TSSCCSTTSBCCEEEEECCSGGGTT
T ss_pred -HHHHHHHHhhhhcccccccccccccccCCcCcCCHHHHHHHHHHHHHHHhCCC-CccccCCCCccCEEEEeCCCcccCC
Confidence 11111111111 12356999999999999999999997 7999999999999999988764421
Q ss_pred cCcccCCCCCCccCCeEE---eeEEEEEEECCEEEEECCeeeccC
Q 009282 457 ARSHHSRLDTNVYEGRRV---KGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~---~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
.+.|+++... ..+|..||++|++||++|+++..|
T Consensus 427 --------~~~p~~~i~~~~~~~~v~~v~v~G~~v~~~g~~~~~d 463 (492)
T 2paj_A 427 --------LHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVD 463 (492)
T ss_dssp --------CSSGGGHHHHSCSCCEEEEEEETTEEEEETTBCTTCC
T ss_pred --------ccCHHHHHHhcCCCCCceEEEECCEEEEECCeeccCC
Confidence 1345544211 247999999999999999999887
|
| >2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine, structural genomics, protein structure initiative; HET: GUN; 2.62A {Bradyrhizobium japonicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=332.83 Aligned_cols=381 Identities=15% Similarity=0.080 Sum_probs=241.1
Q ss_pred cEEEECcEEEcCCC---------------ceeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCeeeccccccccccc
Q 009282 54 KILIKGGTVVNAHH---------------QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLA 115 (538)
Q Consensus 54 ~~~i~n~~vv~~~~---------------~~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~ 115 (538)
.++|.+++|+++.. .++++|+|+||||++||+..+. .++.++||++|++|+|||||+|+|+.
T Consensus 4 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~V~I~~G~I~~Vg~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~Hl~ 83 (475)
T 2ood_A 4 TTVGIRGTFFDFVDDPWKHIGNEQAAARFHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFIDGHIHLP 83 (475)
T ss_dssp CEEEEEEEEEEESSCGGGSTTCGGGGEEEEEEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEEEECEEEEEEEGG
T ss_pred cceEEEEEEEecCCccccccccCCCcceEEECCEEEEECCEEEEEeChhhhccccCCCeEEeCCCcEEecceecCcccHH
Confidence 46788999998654 2588999999999999975322 13578999999999999999999986
Q ss_pred cccC----CCC-----------------ChhhH----HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhccccee
Q 009282 116 MEFM----GSE-----------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170 (538)
Q Consensus 116 ~~~~----~~~-----------------~~~~~----~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (538)
.... +.. +++.+ ....+.++++||||++++...........++...+.+.+....
T Consensus 84 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~g 163 (475)
T 2ood_A 84 QTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEEASRRNMRVIAG 163 (475)
T ss_dssp GTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred hHhhcCCCCCCHHHHHHHhccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEecccCchhHHHHHHHHHHcCCeEEEE
Confidence 4321 110 23333 2346678999999999975322111223333344444332211
Q ss_pred eeeeee-ee----cCChhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhc-CCeEEEEcCCh-hhHH
Q 009282 171 YGFHMA-IT----KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAENG-DAVF 242 (538)
Q Consensus 171 ~~~~~~-~~----~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~~~~-~~~~ 242 (538)
..+... .. ...++.+.+..++.+. .+...++..+.+++.+.++++.++++++.|+++ |+++++|+.+. .+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~a~~~~g~~v~~H~~e~~~~~~ 243 (475)
T 2ood_A 164 LTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVNTHISENPAECS 243 (475)
T ss_dssp CEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEEEECSCCHHHHH
T ss_pred eeecccCCCcccccCHHHHHHHHHHHHHHhccCCceEEEEeccccCcCCHHHHHHHHHHHHhCCCCcEEEeeCCChHHHH
Confidence 111110 01 1112344445555532 245567777777777788899999999999999 99999999643 3333
Q ss_pred HHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccC
Q 009282 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322 (538)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~ 322 (538)
...+ .+|... . ...+++.....+.+..+.|+...+. +.++++++.|+.+..+|....
T Consensus 244 ~~~~---~~g~~~--------~-------~~~~~~~~g~~~~~~~i~H~~~~~~-~~i~~~~~~g~~~~~~P~~~~---- 300 (475)
T 2ood_A 244 GVLV---EHPDCQ--------D-------YLGVYEKFDLVGPKFSGGHGVYLSN-NEFRRMSKKGAAVVFCPCSNL---- 300 (475)
T ss_dssp HHHH---HCTTCS--------S-------HHHHHHTTTCCSTTEEEECCTTCCH-HHHHHHHHHTCEEEECHHHHH----
T ss_pred HHHH---HcCCCc--------c-------HHHHHHHcCCCCCCcEEEEeecCCH-HHHHHHHHcCCEEEEChhhhh----
Confidence 2222 122110 0 0111111123456788999988776 889999999988877765311
Q ss_pred cccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCc--eEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHH
Q 009282 323 DSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL--QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~--~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 400 (538)
..+. ..+| ++.++++|++ +++|||+.+.+.. +++. +......
T Consensus 301 ---------~l~~---~~~~---------~~~~~~~Gv~~~~~lgTD~~~~~~~------~~~~---------~~~~~~~ 344 (475)
T 2ood_A 301 ---------FLGS---GLFR---------LGRATDPEHRVKMSFGTDVGGGNRF------SMIS---------VLDDAYK 344 (475)
T ss_dssp ---------HTTC---CCCC---------HHHHTCTTSCCEEEECCCBTTBSCC------CHHH---------HHHHHHH
T ss_pred ---------hccc---CcCC---------HHHHHhCCCCCcEEEEccCCCCCCc------CHHH---------HHHHHHH
Confidence 1111 1122 7899999999 9999998653211 0111 1111111
Q ss_pred HHH-----hh-------------hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCccc-
Q 009282 401 WDT-----MV-------------ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH- 461 (538)
Q Consensus 401 ~~~-----~~-------------~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~- 461 (538)
+.. +. ...++|++++|+++|.|||+++|+++++|+|++||.|||||+|.|+++.++.+...
T Consensus 345 ~~~~~~~~~~~~~~p~~~~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~GsL~~Gk~ADlvvld~~~~~~~~~~~~~~ 424 (475)
T 2ood_A 345 VGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGNFEPGKEADFVALDPNGGQLAQPWHQSL 424 (475)
T ss_dssp HHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCSSTTHHHHHTT
T ss_pred HhcccchhccCCcccccccccccccCCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCccCEEEEeCCCccccccccccc
Confidence 111 10 12579999999999999999999988899999999999999999887654332111
Q ss_pred -----CC----CCCCccCCeEE---eeEEEEEEECCEEEEECCe
Q 009282 462 -----SR----LDTNVYEGRRV---KGKVEVTIAGGRVVWENDE 493 (538)
Q Consensus 462 -----~~----~~~~~~~~~~~---~~~v~~V~v~G~~V~~~~~ 493 (538)
++ ..++||.+..+ .++|..||++|++||++.+
T Consensus 425 ~~~~~s~~~~~~~~~p~~~~~~~~~~~~V~~t~v~G~~v~~~~~ 468 (475)
T 2ood_A 425 IADGAGPRTVDEAASMLFAVMMVGDDRCVDETWVMGKRLYKKSE 468 (475)
T ss_dssp C--CCSCCSHHHHHHHHHHHHHHCCGGGEEEEEETTEEEEECC-
T ss_pred cccccccccccchhhHHHHHHhhCCCCCeeEEEECCEEEEECCC
Confidence 00 01345554333 4689999999999999865
|
| >3be7_A Zn-dependent arginine carboxypeptidase; unknown source, amidohydrolase, sargasso SEA, structural GEN protein structure initiative, PSI; HET: ARG; 2.30A {Unidentified} SCOP: b.92.1.9 c.1.9.18 PDB: 3dug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=316.98 Aligned_cols=351 Identities=19% Similarity=0.179 Sum_probs=224.9
Q ss_pred CcccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCC------C
Q 009282 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS------E 122 (538)
Q Consensus 51 ~~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~------~ 122 (538)
|+.+++|+|++|+++++ ...++|+|+||||++|++. .+.+.++||++|++|+|||||+|+|+. ..... .
T Consensus 4 ~~~~~~i~n~~v~~~~~~~~~~~~v~I~~g~I~~ig~~--~~~~~~viD~~g~~v~PGlID~H~H~~-~~~~~~~~~~~~ 80 (408)
T 3be7_A 4 TSEDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKI--NTKDATVISIPDLILIPGLMDSHVHIV-GNDSKGEESIAD 80 (408)
T ss_dssp -CCCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECC--CCSSSEEEEEEEEEEEECEEEEEECCS-SCCCCSGGGTTC
T ss_pred ccceEEEEeeEEEeCCCCceeeeEEEEECCEEEEEeCC--CCCCCeEEECCCCEECcCceeeeEccc-CCCCcchhhhcC
Confidence 45689999999999875 3348999999999999986 244578999999999999999999997 31100 1
Q ss_pred ChhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc----ccce------eeeeeeeeecC--------
Q 009282 123 TIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCM------DYGFHMAITKW-------- 180 (538)
Q Consensus 123 ~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~-------- 180 (538)
+++... ...+.++++||||++|+..... ....++...+.+. +... ..+.+......
T Consensus 81 ~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (408)
T 3be7_A 81 SSHMGTVWGVVNAEKTLMAGFTTVRNVGAANY--ADVSVRDAIERGVINGPTMLVSGPALGITGGHCDHNLLPPEFNYSS 158 (408)
T ss_dssp CTHHHHHHHHHHHHHHHTTTEEEEEECCCSTT--HHHHHHHHHHTTSSCCCEEEECCSCBBCTTSTTSCCCSCTTTCCCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEeCCCccc--cCHHHHHHHHCCCCCCCEEEEccceeeccCCCCccccccccccccC
Confidence 222221 1467789999999999864322 2223333333322 1000 00001000000
Q ss_pred --ChhhHHHHHHHH---HHcCCcEEEEEeee--------CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009282 181 --DEVVSDEMEVMV---KEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (538)
Q Consensus 181 --~~~~~~~~~~~~---~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~ 247 (538)
......++.++. ...|.+.+|++.+. .+...++.+.++++++.|+++|+++.+|+.+...+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~i~~~~-- 236 (408)
T 3be7_A 159 EGVVDSPWEARKMVRKNRKYGADLIKFCATGGVMSRNTDVNAKQFTLEEMKAIVDEAHNHGMKVAAHAHGLIGIKAAI-- 236 (408)
T ss_dssp TTBCCSHHHHHHHHHHHHHTTCSEEEEECBCCSSSSSCCTTSBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHH--
T ss_pred CcccCCHHHHHHHHHHHHhcCCCEEEEEecCCcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH--
Confidence 011223333222 15688999998643 124567899999999999999999999998764332221
Q ss_pred HHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCccccc
Q 009282 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (538)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~ 327 (538)
+. +.. .+.|+..... +.++++++.|+.+++++.....+...
T Consensus 237 --~~-------------------------------g~~-~i~H~~~~~~-~~i~~~~~~g~~v~~~~~~~~~~~~~---- 277 (408)
T 3be7_A 237 --KA-------------------------------GVD-SVEHASFIDD-ETIDMAIKNNTVLSMDIFVSDYILGE---- 277 (408)
T ss_dssp --HH-------------------------------TCS-EEEECTTCCH-HHHHHHHHTTCEEECCCSTHHHHHTT----
T ss_pred --Hc-------------------------------CCC-EEEECCCCCH-HHHHHHHHCCCEEeeeecHHHHhhhh----
Confidence 11 222 5889988776 88999999998775443321110000
Q ss_pred CCCcccccceeecCCCCCc------ccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHH
Q 009282 328 HSDFVTAAKYVMSPPIRAS------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401 (538)
Q Consensus 328 ~~~~~~~~~~~~~p~~r~~------~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~ 401 (538)
+....+.|+.+.. .....++.++++|+++++|||+.+.+ .|....+ +
T Consensus 278 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gTD~~~~p---------------~~~~~~~------~ 330 (408)
T 3be7_A 278 ------GAKAGIREESLNKERLVGKKQRENFMNAHRRGAIITFGTDAGIFD---------------HGDNAKQ------F 330 (408)
T ss_dssp ------TTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCEECCCCBTTBC---------------TTCGGGH------H
T ss_pred ------ccccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCC---------------CchHHHH------H
Confidence 0000011111000 11356788999999999999975321 1110011 1
Q ss_pred HHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEE
Q 009282 402 DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 481 (538)
Q Consensus 402 ~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V 481 (538)
+.+++. ++|++++|+++|.|||+++|++ ++|+|++||.|||||+|.|+..++.. ..+|..|
T Consensus 331 ~~~~~~-gls~~~al~~~T~n~A~~lgl~-~~G~i~~G~~ADlvvld~~p~~~~~~-----------------~~~v~~v 391 (408)
T 3be7_A 331 AYMVEW-GMTPLEAIQASTIKTATLFGIE-NIGQIKEGFDADIVGVIENPLANIRT-----------------LEEVAFV 391 (408)
T ss_dssp HHHHHT-TCCHHHHHHTTTHHHHHHHTCS-SCSSCCTTSBCCEEEESSCTTTCGGG-----------------TTSCCEE
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHhCCC-cccccCCCCccCEEEECCCchhhHHH-----------------hhceeEE
Confidence 123344 6999999999999999999997 89999999999999999886532211 1368999
Q ss_pred EECCEEEEECCe
Q 009282 482 IAGGRVVWENDE 493 (538)
Q Consensus 482 ~v~G~~V~~~~~ 493 (538)
|++|++|+++..
T Consensus 392 ~~~G~~v~~~~~ 403 (408)
T 3be7_A 392 MKEGKVYKREGH 403 (408)
T ss_dssp EETTEEEEECCC
T ss_pred EECCEEEecccc
Confidence 999999998753
|
| >2qt3_A N-isopropylammelide isopropyl amidohydrolase; N-isopropylammelide isopropylaminohydrolase ATZC, structural genomics, NYSGXRC, target 9364B; 2.24A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=311.23 Aligned_cols=353 Identities=15% Similarity=0.113 Sum_probs=223.3
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC----------CC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM----------GS 121 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~----------~~ 121 (538)
+.+++|+|++|++++.. ++|+|+||||++||+..+.+ +.++||++|++|+|||||+|+|+..... +.
T Consensus 4 ~~~~li~n~~v~~~~~~--~~v~I~~g~I~~vg~~~~~~-~~~viD~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~g~ 80 (403)
T 2qt3_A 4 DFDLIIRNAYLSEKDSV--YDIGIVGDRIIKIEAKIEGT-VKDEIDAKGNLVSPGFVDAHTHMDKSFTSTGERLPKFWSR 80 (403)
T ss_dssp CEEEEEEEEEETTTTEE--EEEEEETTEEEEEESSCCSC-EEEEEECTTCBEEECEEEEEECGGGTTTTCSSSSCTTCSS
T ss_pred ccceEEEeeEecCCCee--EEEEEECCEEEEeecCCCCC-ccceEcCCCCEecccceeeeeccchhhcccccccccccCC
Confidence 56799999999987643 89999999999999865433 4689999999999999999999986531 11
Q ss_pred C-----------------ChhhHHH----HHHHHHhCCcEEEecccCCCCCC---HHHHHHHHHHHhcccceeeeeee-e
Q 009282 122 E-----------------TIDDFFS----GQAAALAGGTTMHIDFVIPINGS---LTAGFEAYEKKAKNSCMDYGFHM-A 176 (538)
Q Consensus 122 ~-----------------~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~ 176 (538)
. ++++++. ....++++||||++++....... ..+.+....+.. +......... .
T Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 159 (403)
T 2qt3_A 81 PYTRDAAIEDGLKYYKNATHEEIKRHVIEHAHMQVLHGTLYTRTHVDVDSVAKTKAVEAVLEAKEEL-KDLIDIQVVAFA 159 (403)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECSTTTTTHHHHHHHHHHHHH-TTTCEEEEEEEC
T ss_pred CcccCcCHHHHHHHhhhcCHHHHHHHHHHHHHHHHHcCCcEEEEEEcccCccccchHHHHHHHHHHh-hcceeEEEEEcC
Confidence 0 1222222 35667899999998764332211 111111111111 1122221110 0
Q ss_pred --eecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCC
Q 009282 177 --ITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGI 253 (538)
Q Consensus 177 --~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~ 253 (538)
.....++..+.+++.. +.|...++.+ .++.....+.+.++++++.|+++|+++.+|+.+... ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~-~p~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~----------- 226 (403)
T 2qt3_A 160 QSGFFVDLESESLIRKSL-DMGCDLVGGV-DPATRENNVEGSLDLCFKLAKEYDVDIDYHIHDIGTVGV----------- 226 (403)
T ss_dssp TTCTTTSTTHHHHHHHHH-HTTCSEEECB-CTTTTTSCHHHHHHHHHHHHHHTTCEEEEEECCCHHHHH-----------
T ss_pred CcccccCcchHHHHHHHH-hcCCCeEEEe-cCCCCCCChHHHHHHHHHHHHHcCCCeEEEeCCcccchh-----------
Confidence 0011223344444444 5676665532 333333445689999999999999999999965432 11
Q ss_pred CCcccccccCCchHHHHHHHHHHHHHHHcC--CCEEEEeccCHHH------HHHHHHHHHcCCcEEEeccccccccCccc
Q 009282 254 TGPEGHALSRPPLLEGEATTRAIRLAEFVN--TPLYVVHVMSMDA------MEEIAKARKAGQRVIGEPVVSGLVLDDSW 325 (538)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~h~~~~~~------~~~i~~~~~~g~~v~~~~~~~~~~~~~~~ 325 (538)
..++.+++.+...+ .++.+.|+...+. .+.++++++.|+.++.+|..
T Consensus 227 ----------------~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~~g~~v~~~p~~--------- 281 (403)
T 2qt3_A 227 ----------------YSINRLAQKTIENGYKGRVTTSHAWCFADAPSEWLDEAIPLYKDSGMKFVTCFSS--------- 281 (403)
T ss_dssp ----------------HHHHHHHHHHHHTTCTTSEEEEECTHHHHSCHHHHHHHHHHHHHHTCEEEEETTT---------
T ss_pred ----------------HHHHHHHHHHHHcCCCCCeEEEehhhhccCChhhHHHHHHHHHHcCCEEEECCCC---------
Confidence 11222233333333 3678999987653 27889999999988887642
Q ss_pred ccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh
Q 009282 326 LWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405 (538)
Q Consensus 326 ~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~ 405 (538)
. .. . .+++.++++|+++++|||+... ++ .++|...+...+.... ...
T Consensus 282 ------~--~~--~----------~~~~~~~~~Gv~v~lgtD~~~~----------~~--~~~g~~~~~~~~~~~~-~~~ 328 (403)
T 2qt3_A 282 ------T--PP--T----------MPVIKLLEAGINLGCASDNIRD----------FW--VPFGNGDMVQGALIET-QRL 328 (403)
T ss_dssp ------C--CT--T----------CCHHHHHHTTCEEEEECCSCSS----------SS--CSCCCCCHHHHHHHHH-HHT
T ss_pred ------C--CC--C----------CCHHHHHHcCCcEEEeCCCCCC----------CC--CCCCCCCHHHHHHHHH-HHh
Confidence 0 00 0 1278899999999999997521 11 1122111111111111 000
Q ss_pred h-cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEEC
Q 009282 406 E-SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAG 484 (538)
Q Consensus 406 ~-~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~ 484 (538)
. ..+++++++|+++|.|||+++|+++ .|+|++||.|||||+|.+++.. ......+|..||++
T Consensus 329 ~~~~~~~~~~al~~~T~~~A~~lg~~~-~g~i~~G~~ADlvv~d~~~~~~----------------~~~~~~~v~~v~v~ 391 (403)
T 2qt3_A 329 ELKTNRDLGLIWKMITSEGARVLGIEK-NYGIEVGKKADLVVLNSLSPQW----------------AIIDQAKRLCVIKN 391 (403)
T ss_dssp TCCSHHHHHHHHHHTTHHHHHHHTCGG-GCSSSTTSBCCEEEESSSSHHH----------------HHHHCCCEEEEEET
T ss_pred CcCCccCHHHHHHHHHHHHHHhcCCCc-ccCCCCCCcCCEEEEcCCChHH----------------HhhcCCCccEEEEC
Confidence 1 1126899999999999999999965 5999999999999999885321 11113479999999
Q ss_pred CEEEEECCeeec
Q 009282 485 GRVVWENDELNV 496 (538)
Q Consensus 485 G~~V~~~~~~~~ 496 (538)
|++||++|+++.
T Consensus 392 G~~v~~~g~~~~ 403 (403)
T 2qt3_A 392 GRIIVKDEVIVA 403 (403)
T ss_dssp TEEEEESSSBCC
T ss_pred CEEEecCCcccC
Confidence 999999998863
|
| >2p9b_A Possible prolidase; protein structure initiative II, PSI-2, amidohydrolase, structural genomics; 1.70A {Bifidobacterium longum NCC2705} SCOP: b.92.1.10 c.1.9.17 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=326.14 Aligned_cols=366 Identities=19% Similarity=0.198 Sum_probs=229.9
Q ss_pred cccEEEECcEEEcCCC--c-eeeeEEE-eCCEEEEecC--CCCCCCCceEEecCCCeeeccccccccccccccCCCC---
Q 009282 52 SSKILIKGGTVVNAHH--Q-QIADVYV-EDGIVVAVQP--NINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSE--- 122 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~-~~~~V~I-~~grI~~Vg~--~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~--- 122 (538)
+.+++|+|++|+++++ . .+++|+| +||||++||+ ....+.+.++||++|++|+|||||+|+|+........
T Consensus 12 ~~~~li~n~~i~~~~~~~~~~~~~v~I~~~g~I~~Vg~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~~~ 91 (458)
T 2p9b_A 12 EPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMPGLINAHTHLFSQGKPLNPKL 91 (458)
T ss_dssp CCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCCTTCEEEECTTCEEEECEEEEEECSCC---------
T ss_pred CCcEEEEeeEEEeCCCCccccCcEEEEecCCEEEEEeccccCCCCCCCeEEECCCCEEccceeeeeeccccccccccccc
Confidence 4678999999999874 2 4689999 9999999997 4433446789999999999999999999986521100
Q ss_pred ------------Ch---------hhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeee-----eee-
Q 009282 123 ------------TI---------DDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYG-----FHM- 175 (538)
Q Consensus 123 ------------~~---------~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~- 175 (538)
.. ..+....+.++++||||++|+..... ....++...+.+......+. +..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~g~~~g~r~~~~g~~~~~~ 169 (458)
T 2p9b_A 92 ATPKGQRMVATFAHSPLGKPYMAATVKHNATTLLESGVTTIRTLGDVGY--EVVTLRDQIDAGQILGPRILASGPLMAIP 169 (458)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTEEEEEESCCSSS--HHHHHHHHHHTTSSCCCEEECCCSCEECC
T ss_pred cchhhhhhhhhhhhhcccccHHHHHHHHHHHHHHHcCCcEEEeCCCCcc--ccHHHHHHHHcCCCCCCeEEecccccccC
Confidence 00 12334567789999999999854322 22233333332221001110 000
Q ss_pred eee--------cCC-hhhHHHHHHHHHHcCCcEEEEEeee----------CCCccCCHHHHHHHHHHHHhcCCeEEEEcC
Q 009282 176 AIT--------KWD-EVVSDEMEVMVKEKGINSFKFFMAY----------KGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (538)
Q Consensus 176 ~~~--------~~~-~~~~~~~~~~~~~~g~~~ik~~~~~----------~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 236 (538)
+.. ..+ ++....++++. +.|.+.+|++.++ ++.+.++.+.++++++.|+++|+++.+|+.
T Consensus 170 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~ 248 (458)
T 2p9b_A 170 EGHGAPLIALTSGTPEEARTAVAQNL-KAGVNAIKIAATGGVTDAQEIGEAGSPQMSVEQMRAICDEAHQYGVIVGAHAQ 248 (458)
T ss_dssp CSSCCCCEECCSCCHHHHHHHHHHHH-HTTCSCEEEECSCCTTSCCCC------CCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCccccCccCCCHHHHHHHHHHHH-HcCCCEEEEEecCCcCCCCccCCCCCCcCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 000 011 22233344444 5688899998752 123466889999999999999999999998
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHH------HcCCcE
Q 009282 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR------KAGQRV 310 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~------~~g~~v 310 (538)
+...+...+ +.| .. .+.|+..... +.+++++ +.|+.+
T Consensus 249 ~~~~i~~~~----~~G-------------------------------~~-~i~H~~~~~~-~~~~~~~~~~~~~~~g~~v 291 (458)
T 2p9b_A 249 SPEGVRRSL----LAG-------------------------------VD-TIEHGSVLDD-ELIGMFRHNPNALRGYSAL 291 (458)
T ss_dssp SHHHHHHHH----HHT-------------------------------CS-EEEECCCCCH-HHHHHHHCCTTSTTSCCEE
T ss_pred CHHHHHHHH----HcC-------------------------------CC-EEEECCCCCH-HHHHHHhcccccccCCeEE
Confidence 764332221 222 22 4788877665 7888899 899766
Q ss_pred EEecccc--ccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCC
Q 009282 311 IGEPVVS--GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (538)
Q Consensus 311 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~ 388 (538)
.++..+. +........ .+. ......++.+.......++.++++|+++++|||+... + .+.
T Consensus 292 ~p~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~gtD~~~~-----------~--~~~ 353 (458)
T 2p9b_A 292 IPTLSAGLPLTLLGQDVT---GIT--DIQLENSKNVVGGMVSGARQAHEAGLMIGVGTDTGMT-----------F--VPQ 353 (458)
T ss_dssp ECCHHHHHHHHHSCHHHH---CCC--HHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCCCTTST-----------T--SCT
T ss_pred EeecchhhHHHhhhcccc---cCC--HHHHHHHHHHHHHHHHHHHHHHHCCCeEEEecCCCCC-----------C--Ccc
Confidence 4333111 111111000 000 0000001111112345678899999999999996321 1 111
Q ss_pred CCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCc
Q 009282 389 GVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNV 468 (538)
Q Consensus 389 g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~ 468 (538)
+. +...+..+++..++|++++|+++|.|||+++|+++++|+|++||.|||||+|.|++.++..
T Consensus 354 ~~------~~~e~~~~~~~~~ls~~~al~~~T~~~A~~lgl~~~~Gsi~~Gk~ADlvvld~~p~~~~~~----------- 416 (458)
T 2p9b_A 354 YA------TWRELELLVAYAGFSPAEALHAATAVNASILGVDAETGSLEVGKSADLLVLNANPLDDLRA----------- 416 (458)
T ss_dssp TC------HHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGGG-----------
T ss_pred cc------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCcCCCCccCCCCcCCEEEECCCchhCHHH-----------
Confidence 11 1122223444446999999999999999999998889999999999999999886532210
Q ss_pred cCCeEEeeEEEEEEECCEEEEEC--CeeeccC
Q 009282 469 YEGRRVKGKVEVTIAGGRVVWEN--DELNVVP 498 (538)
Q Consensus 469 ~~~~~~~~~v~~V~v~G~~V~~~--~~~~~~~ 498 (538)
..+|..||++|++||++ +++...|
T Consensus 417 ------~~~v~~v~v~G~~v~~~~~~~~~~~d 442 (458)
T 2p9b_A 417 ------LEHPALVIAAGHPVWRPGPKRFADID 442 (458)
T ss_dssp ------GTSCSEEEETTEECCSCCCCCCHHHH
T ss_pred ------hccceEEEECCEEEecCchhhhhhHh
Confidence 13689999999999988 7777654
|
| >2i9u_A Cytosine/guanine deaminase related protein; protein structure initiative II (PSI-II), amidohydrol guanine deaminase; HET: GUN; 2.05A {Clostridium acetobutylicum} SCOP: b.92.1.4 c.1.9.9 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=321.86 Aligned_cols=374 Identities=16% Similarity=0.121 Sum_probs=231.7
Q ss_pred cccEEEECcEEEcCCC-----ceeeeEEEeCCEEEEecCCCCCC-CCceEEecCCCeeeccccccccccccccC-C----
Q 009282 52 SSKILIKGGTVVNAHH-----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---- 120 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~-----~~~~~V~I~~grI~~Vg~~~~~~-~~~~vID~~G~~v~PGlID~H~H~~~~~~-~---- 120 (538)
|.+++|+|++|++++. ..+++|+|+||||++||+....+ ++.++||++|++|+|||||+|+|+..... +
T Consensus 8 m~~~li~~~~v~~~~~~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~~viD~~G~~v~PGlID~H~H~~~~~~~g~~~~ 87 (439)
T 2i9u_A 8 INLKIFKGNLIFTKTSDKFTIMKDSYIVVIDGKIASVSSNLPDKYKGNPIIDFRNNIIIPGMNDLHAHASQYKNLGIGMD 87 (439)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEESSCCGGGTTSCEEEEEEEEEEECEEEEEEEGGGGGGTTCCCS
T ss_pred cccEEEEeeEEEecCCccceEEeccEEEEECCEEEEecccccccCCCceEEcCCCeEEEecceecccccchHhhhCCcCC
Confidence 5679999999999762 25889999999999999754321 35689999999999999999999986421 1
Q ss_pred CC-----------------ChhhHHHH----HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeee-ee
Q 009282 121 SE-----------------TIDDFFSG----QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA-IT 178 (538)
Q Consensus 121 ~~-----------------~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 178 (538)
.. +++.+... .+.++++||||++++...........++...+.+.+.......... .+
T Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~~~~~~~p 167 (439)
T 2i9u_A 88 KELLPWLNNYTFPEEAKFLNVDYAKKTYGRLIKDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCP 167 (439)
T ss_dssp SCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECCSSCC
T ss_pred CCHHHHHHhcccchhhccCCHHHHHHHHHHHHHHHHhcCceEEEEccccccchHHHHHHHHHHcCCEEEEEeeeccccCC
Confidence 00 12223222 3578999999999975321111233444444444332221111110 01
Q ss_pred ----cCChhhHHHHHHHHHH--cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHc
Q 009282 179 ----KWDEVVSDEMEVMVKE--KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIEL 251 (538)
Q Consensus 179 ----~~~~~~~~~~~~~~~~--~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~ 251 (538)
...++...+..++.+. .+...+++++.+.....++.+.++++++.|+++|+++.+|+.+. .+.....+ ..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~---~~ 244 (439)
T 2i9u_A 168 DYLTENYITSLNDTEEIILKYKDKSNIVKPIITPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVKS---LH 244 (439)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHTTTCSSEEECBEECCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHH---HC
T ss_pred cccchhHHHHHHHHHHHHHHHhCCCCceEEEEecCCcCcCCHHHHHHHHHHHHhcCCcEEEeecCChHHHHHHHH---Hh
Confidence 0111233444444432 23455777776665566789999999999999999999999653 33332222 12
Q ss_pred CCCCcccccccCCchHHHHHHHHHHHHHHHcC-CCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCC
Q 009282 252 GITGPEGHALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (538)
Q Consensus 252 g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (538)
+.. +.. ++. ++.....+ .++.+.|+..... +.++++++.|+.+..+|...
T Consensus 245 ~~~---------~~~-----~~~-~~~~g~~~~~~~~i~H~~~~~~-~~~~~l~~~g~~~~~~p~~~------------- 295 (439)
T 2i9u_A 245 KKS---------NFY-----GEV-YDKFGLFGNTPTLMAHCIHSSK-EEINLIKRNNVTIVHCPTSN------------- 295 (439)
T ss_dssp TTC---------SSH-----HHH-HHHTTCSSSSCEEEEECCSCCH-HHHHHHHHTTCEEEECHHHH-------------
T ss_pred CCC---------CCH-----HHH-HHHcCCCCCCCeEEEEEecCCH-HHHHHHHHcCCEEEECccch-------------
Confidence 211 101 111 11122234 6677899987766 78888999998777665431
Q ss_pred cccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh-----
Q 009282 331 FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV----- 405 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~----- 405 (538)
+..+. ..+| ++.+++.|+++++|||+.+.. ... ++. +......+.+..
T Consensus 296 ~~l~~---~~~~---------~~~~~~~Gv~~~lgtD~~~~~-~~~-----~~~---------~~~~~~~~~~~~~~~~~ 348 (439)
T 2i9u_A 296 FNLGS---GMMP---------VRKYLNLGINVVLGSDISAGH-TCS-----LFK---------VIAYAIQNSKIKWQESG 348 (439)
T ss_dssp HHTTC---CCCC---------HHHHHHTTCEEEECCCBTTBC-CSC-----HHH---------HHHHHHHHHHHHHHHTT
T ss_pred hhccc---ccCC---------HHHHHHCCCcEEEecCCCCCC-CcC-----HHH---------HHHHHHHHhcccccccc
Confidence 11111 1222 778999999999999986421 110 111 122222222222
Q ss_pred -hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEE---eeEEEEE
Q 009282 406 -ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV---KGKVEVT 481 (538)
Q Consensus 406 -~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~V 481 (538)
...++|++++|+++|.|||+++| ++|+|++||.|||||+|.++++..+ +.. +.|+.+... ..+|..|
T Consensus 349 ~~~~~ls~~~al~~~T~~~A~~lg---~~Gsl~~G~~ADlvvld~~~~~~~~-~~~-----~~~~~~~~~~~~~~~v~~v 419 (439)
T 2i9u_A 349 KKDMFLSTSEAFYMATKKGGSFFG---KVGSFEEGYDFDALVINDSNLYPED-YDL-----TERLERFIYLGDDRNIMKR 419 (439)
T ss_dssp SCSCCCCHHHHHHHHTHHHHTTTS---SCSSCSTTCBCCEEEECCTTSCGGG-SCH-----HHHHHHHHHHCCGGGEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhc---cCCccCCCCccCEEEEeCCCccccC-CCc-----cCHHHHheecCCCCCeeEE
Confidence 24679999999999999999999 5899999999999999998765441 100 122222111 2489999
Q ss_pred EECCEEEEECCe
Q 009282 482 IAGGRVVWENDE 493 (538)
Q Consensus 482 ~v~G~~V~~~~~ 493 (538)
|++|++||++++
T Consensus 420 ~v~G~~v~~~~~ 431 (439)
T 2i9u_A 420 YVCGNEIFGPKF 431 (439)
T ss_dssp EETTEEEC----
T ss_pred EECCEEEeeCCC
Confidence 999999998764
|
| >1rk6_A D-aminoacylase; TIM barrel, beta barrel, insertion, hydrolase; 1.43A {Alcaligenes faecalis} SCOP: b.92.1.6 b.92.1.6 c.1.9.11 PDB: 1rjp_A 1v51_A 1rjq_A 1rjr_A 1rk5_A 1v4y_A 1m7j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=321.83 Aligned_cols=393 Identities=17% Similarity=0.209 Sum_probs=254.1
Q ss_pred cccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
+++++|+|++|++++. ..+++|+|+||||++|++... +.+.++||++|++|+|||||+|+|+..... .. .
T Consensus 20 ~~~~~i~~~~v~~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~iD~~g~~v~PG~iD~H~H~~~~~~--~~-----~ 91 (496)
T 1rk6_A 20 PFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSPGFIDSHTHDDNYLL--KH-----R 91 (496)
T ss_dssp CBSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCBSCEEECTTCEEEECEEESSCCCTTHHH--HC-----T
T ss_pred cccEEEECCEEEeCCCCceeccEEEEECCEEEEecCCCC-CCCCeEEeCCCCEEecCEeeeeecCCcccc--cc-----H
Confidence 4579999999999865 368899999999999997542 335689999999999999999999976511 01 1
Q ss_pred HHHHHHhCCcEEEecccC-----CCC--C---CH----------HHHHHHHHHHhc--ccceeeeeeeee----------
Q 009282 130 GQAAALAGGTTMHIDFVI-----PIN--G---SL----------TAGFEAYEKKAK--NSCMDYGFHMAI---------- 177 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~~~-----~~~--~---~~----------~~~~~~~~~~~~--~~~~~~~~~~~~---------- 177 (538)
..+.++++||||++++.. +.. . .. ...+..+.+... ...+++.+..+.
T Consensus 92 ~~~~~~~~G~Tt~~~~~~g~~~~p~~~~~l~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~~~~~~~ 171 (496)
T 1rk6_A 92 DMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAVNAACMVGHSTLRAAVMPD 171 (496)
T ss_dssp TCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHHHSCCSSEEEEEEEHHHHHHHHCSC
T ss_pred HHHHHHcCCeEEEEeCCCCCCCCCCChHHHHHhhcccCcccccCccCHHHHHHHHhccCCccceEEecccccceeeeccc
Confidence 256789999999998742 110 0 00 111111111111 122333332211
Q ss_pred --ecCChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcC
Q 009282 178 --TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELG 252 (538)
Q Consensus 178 --~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g 252 (538)
.....+...++..+.+ +.|+..++....+......+.+++.++++.++++|.++..|++....
T Consensus 172 ~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~el~~~~~~a~~~g~~v~~H~~~~~~------------ 239 (496)
T 1rk6_A 172 LRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATHMRDEGE------------ 239 (496)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHHHTCEEEEECSCSST------------
T ss_pred cccCCCHHHHHHHHHHHHHHHHcCCcEEeeccccCCCCCCCHHHHHHHHHHHHHcCCEEEEEeCCCcc------------
Confidence 0112233445554442 46888877654332223457888999999999999999999975321
Q ss_pred CCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccC---------HHHHHHHHHHHHcCCcEEEeccccccccCc
Q 009282 253 ITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS---------MDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (538)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~---------~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~ 323 (538)
.+.+.+.+.++++.+.|.++++.|+.. ....+.++.++..| .++++.+++..+...
T Consensus 240 --------------~~~~~l~~~~~~a~~~g~~v~i~H~~~~~~~~~g~~~~~~~~l~~a~~~g-~v~~~~~~~~~~~~~ 304 (496)
T 1rk6_A 240 --------------HIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQ-DVSLDAYPYVAGSTM 304 (496)
T ss_dssp --------------THHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHHHHHHHHHHHS-CEEEEECSCSCEEEE
T ss_pred --------------cHHHHHHHHHHHHHHcCCeEEEEEEeccCCcchhhHHHHHHHHHHHHHcC-CeEEEEeccCCCCCc
Confidence 123556777778888899999999843 22345666666688 888887765543322
Q ss_pred ccccCCCccc--ccceeecCCC--------------CCcccHHHHHHHHhcCC-----------------ceEEeCCCCC
Q 009282 324 SWLWHSDFVT--AAKYVMSPPI--------------RASGHNKALQAALATGI-----------------LQLVGTDHCA 370 (538)
Q Consensus 324 ~~~~~~~~~~--~~~~~~~p~~--------------r~~~~~~~l~~~l~~Gv-----------------~~~lgtD~~~ 370 (538)
..+. .+.. +..+...|+. +.....+.++++++.|+ ++++|||+.+
T Consensus 305 ~~~~--~l~~~~~~~v~~~p~~~~l~~~~l~~~~~~~g~~~~~~l~~~l~~G~i~~~~~~~~v~~~~~~~~~~iGTD~~~ 382 (496)
T 1rk6_A 305 LKQD--RVLLAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGAIYFMMDEPDVQRILAFGPTMIGSDGLP 382 (496)
T ss_dssp CCCC--TTTTSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEEEECCCCHHHHHHHHHSTTEEECCCCCT
T ss_pred ccHH--HhcCccceEEeccCCCcccccCcHHHHHHHcCCCHHHHHHHHHhcCceeecCCHHHHHHHHcCCCEEEecCCCC
Confidence 1111 1110 1122222221 33344677778888888 6899999875
Q ss_pred CChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh-cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcC
Q 009282 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNP 449 (538)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~-~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~ 449 (538)
.+.. + .......+...+..++. .+.+|++++|+++|.|||++||++ ++|+|++|+.|||||+|.
T Consensus 383 ~~~~-------~-------~~~~~~~~~~~l~~~v~~~~~l~~~~~l~~~T~~~A~~lgl~-~~G~i~~G~~ADlv~~d~ 447 (496)
T 1rk6_A 383 HDER-------P-------HPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFGLA-ERGQVQPGYYADLVVFDP 447 (496)
T ss_dssp TCSS-------C-------CTHHHHHHHHHHCCCCCCTCSSCHHHHHHTTTHHHHHHHTCT-TCSSCCTTSBCCEEEECT
T ss_pred CCCC-------C-------CchhhccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhCCC-CCCCcCCCCcccEEEEcC
Confidence 5310 0 01112234444433443 456999999999999999999994 589999999999999998
Q ss_pred CCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 450 NSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
+++.+.+. +. +++. ....|..||++|++||++|++++.+ .|++++++
T Consensus 448 ~~~~~~~~--~~-----~~~~---~~~~v~~v~v~G~~v~~~g~~~~~~-~g~~l~~~ 494 (496)
T 1rk6_A 448 ATVADSAT--FE-----HPTE---RAAGIHSVYVNGAAVWEDQSFTGQH-AGRVLNRA 494 (496)
T ss_dssp TTCBCCCC--SS-----STTC---CCBSEEEEEETTEEEEETTEECSCC-CCCBCCC-
T ss_pred cccccccc--cc-----cccc---cCCCceEEEECCEEEEECCeeccCC-CceEeecC
Confidence 87543321 11 2222 1357999999999999999999887 68888754
|
| >2bb0_A Imidazolonepropionase; TIM barrel, hydrolase; 2.00A {Bacillus subtilis} SCOP: b.92.1.10 c.1.9.17 PDB: 2g3f_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=307.61 Aligned_cols=347 Identities=17% Similarity=0.188 Sum_probs=215.7
Q ss_pred ccEEEEC-cEEEcCCC--------------ceeeeEEEeCCEEEEecCCC-C--CCCCceEEecCCCeeecccccccccc
Q 009282 53 SKILIKG-GTVVNAHH--------------QQIADVYVEDGIVVAVQPNI-N--VGDDVKVLDATGKFVMPGGIDPHTHL 114 (538)
Q Consensus 53 ~~~~i~n-~~vv~~~~--------------~~~~~V~I~~grI~~Vg~~~-~--~~~~~~vID~~G~~v~PGlID~H~H~ 114 (538)
++++|+| ++|+|+++ ..+++|+|+||||++||+.. . .+ ..++||++|++|+|||||+|+|+
T Consensus 5 ~d~li~n~g~I~t~~~~~~~~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~-~~~viD~~G~~v~PGfID~H~H~ 83 (421)
T 2bb0_A 5 IDTILINIGQLLTMESSGPRAGKSMQDLHVIEDAVVGIHEQKIVFAGQKGAEAGYE-ADEIIDCSGRLVTPGLVDPHTHL 83 (421)
T ss_dssp EEEEEEEEEEECCCCCSSCCCGGGGTCCCCEEEEEEEEETTEEEEEEETTTTTTCE-EEEEEECTTCEEEECEEECCBCC
T ss_pred ccEEEECCcEEEecCCCccccccccccccccccceEEEECCEEEEEecccccccCC-CCeEEeCCCCEeccCeeccCcCc
Confidence 5789999 99998753 25789999999999999764 2 22 36799999999999999999998
Q ss_pred ccccCC-------------------------------CCChhhHHHH----HHHHHhCCcEEEecccCCCCC--CHHHHH
Q 009282 115 AMEFMG-------------------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPING--SLTAGF 157 (538)
Q Consensus 115 ~~~~~~-------------------------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~--~~~~~~ 157 (538)
...... ..+++.+... ...++++||||+.++...... .....+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~gggi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~ 163 (421)
T 2bb0_A 84 VFGGSREKEMNLKLQGISYLDILAQGGGILSTVKDTRAASEEELLQKAHFHLQRMLSYGTTTAEVKSGYGLEKETELKQL 163 (421)
T ss_dssp CCCSCCGGGHHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTEEEEEEECCSCCSHHHHHHHH
T ss_pred cccccchHHHHHHHhCCCHHHHhhcCCCcccchhhhhcCCHHHHHHHHHHHHHHHHhcCceEEEeccccCcCccchHHHH
Confidence 654100 0122222222 366789999999986322111 112233
Q ss_pred HHHHHHhcccceeee--eeee--ee-cCC---hhhHHHHH----HHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHH
Q 009282 158 EAYEKKAKNSCMDYG--FHMA--IT-KWD---EVVSDEME----VMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225 (538)
Q Consensus 158 ~~~~~~~~~~~~~~~--~~~~--~~-~~~---~~~~~~~~----~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~ 225 (538)
+...+......+... +... .. ... ++..+... .+......+.++.+. +...++.+.++++++.|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~l~~~~~~a~ 240 (421)
T 2bb0_A 164 RVAKKLHESQPVDLVSTFMGAHAIPPEYQNDPDDFLDQMLSLLPEIKEQELASFADIFT---ETGVFTVSQSRRYLQKAA 240 (421)
T ss_dssp HHHHHHHHHSSSEEEEEEEEESSCCGGGTTCHHHHHHHHHTTHHHHHHTTCCSEEEEBB---CTTSBCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEeeccccCChhhcccHHHHHHHHHHhhHHhhccCccccccccC---CcCCCCHHHHHHHHHHHH
Confidence 333333222111111 1100 00 000 11122111 111112234444332 223468899999999999
Q ss_pred hcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHH
Q 009282 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARK 305 (538)
Q Consensus 226 ~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~ 305 (538)
++|+++.+|+...... ...+. +...+. ..+.|+...++ +.++++++
T Consensus 241 ~~g~~v~~H~~~~~~~-~~~~~-------------------------------~~~~g~-~~~~H~~~~~~-~~i~~~~~ 286 (421)
T 2bb0_A 241 EAGFGLKIHADEIDPL-GGAEL-------------------------------AGKLKA-VSADHLVGTSD-EGIKKLAE 286 (421)
T ss_dssp HTTCEEEEEECSSSCC-SHHHH-------------------------------HHHTTC-SEEEECTTCCH-HHHHHHHH
T ss_pred HCCCCEEEEecccccc-CHHHH-------------------------------HHHcCC-cEEhhhhcCCH-HHHHHHHH
Confidence 9999999998532110 00111 112232 24789988777 88999999
Q ss_pred cCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCC-ChhhhhcCccCcc
Q 009282 306 AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAF-NSTQKAFGIDDFR 384 (538)
Q Consensus 306 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~-~~~~~~~~~~~~~ 384 (538)
.|+.++.+|...+. + . +.. . .+++.++++|+++++|||+.+. ++.
T Consensus 287 ~g~~~~~~p~~~~~-l----------~-~~~--~----------~~~~~~~~~Gv~v~lgtD~~~~~~~~---------- 332 (421)
T 2bb0_A 287 AGTIAVLLPGTTFY-L----------G-KST--Y----------ARARAMIDEGVCVSLATDFNPGSSPT---------- 332 (421)
T ss_dssp HTCEEEECHHHHHH-T----------T-CCC--C----------CCHHHHHHTTCCEEECCCBBTTTBCC----------
T ss_pred cCCeEEECCchhhh-h----------c-ccc--c----------chHHHHHHCCCeEEEeCCCCCCCCcc----------
Confidence 99887777653211 1 0 001 1 1278899999999999997542 111
Q ss_pred cCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCC
Q 009282 385 KIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRL 464 (538)
Q Consensus 385 ~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~ 464 (538)
..+...++.++...++|+++||+++|.|||+++|+++++|+|+|||.|||||+|.|++..+.
T Consensus 333 ----------~~~~~~~~~~~~~~~ls~~eal~~~T~~~A~~lg~~~~~Gsl~~Gk~ADlvvld~~~~~~~~-------- 394 (421)
T 2bb0_A 333 ----------ENIQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQLKAGRSADLVIWQAPNYMYIP-------- 394 (421)
T ss_dssp ----------CCHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTTTSSCCSTTSBCCEEEESSSSTTHHH--------
T ss_pred ----------cCHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhCccCCccccCCCCcCCEEEECCcccccCH--------
Confidence 01222232344456799999999999999999999888999999999999999987653321
Q ss_pred CCCccCCeEEeeEEEEEEECCEEEEEC-Ceee
Q 009282 465 DTNVYEGRRVKGKVEVTIAGGRVVWEN-DELN 495 (538)
Q Consensus 465 ~~~~~~~~~~~~~v~~V~v~G~~V~~~-~~~~ 495 (538)
+... ..+|..||++|++||++ |+++
T Consensus 395 ----~~~~--~~~v~~t~v~G~~v~~~~g~~~ 420 (421)
T 2bb0_A 395 ----YHYG--VNHVHQVMKNGTIVVNREGAIL 420 (421)
T ss_dssp ----HSCS--SCCEEEEEETTEEEEEC-----
T ss_pred ----hHcC--CCceEEEEECCEEEEeCCcccc
Confidence 1111 24799999999999986 6654
|
| >2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=308.03 Aligned_cols=348 Identities=17% Similarity=0.189 Sum_probs=224.7
Q ss_pred cccEEEECcEEEcCCC--c-eeeeEEEeCCEEEEecCCCCCCCCc--eEEecCCCeeeccccccccccccccCCC-----
Q 009282 52 SSKILIKGGTVVNAHH--Q-QIADVYVEDGIVVAVQPNINVGDDV--KVLDATGKFVMPGGIDPHTHLAMEFMGS----- 121 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~-~~~~V~I~~grI~~Vg~~~~~~~~~--~vID~~G~~v~PGlID~H~H~~~~~~~~----- 121 (538)
.++++|+|++|++++. . .+++|+|+||||++|++.. .+.+. ++||++|++|+|||||+|+|+.......
T Consensus 6 ~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg~~~-~~~~~~~~viD~~g~~v~PGlID~H~H~~~~~~~~~~~~~ 84 (418)
T 2qs8_A 6 DSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGF-ISSNDFEDYIDLRDHTVLPGLMDMHVHFGQEYQSKAQAPI 84 (418)
T ss_dssp -CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESC-CCCTTSSEEEEEEEEEEEECEEEEEECTTCCCCCTTTSCS
T ss_pred CccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEeCCC-CCCCCcceEEECCCCEECCCeeeeeeccccCCCCCchhhh
Confidence 4578999999999876 2 5789999999999999864 33456 8999999999999999999998752110
Q ss_pred -CChhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc----ccceee------eeeee----------
Q 009282 122 -ETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK----NSCMDY------GFHMA---------- 176 (538)
Q Consensus 122 -~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~---------- 176 (538)
.+++... ..++.++++||||++|+..... ....++...+.+. +..... +.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~~~--~~~~~~~~~~~g~~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~ 162 (418)
T 2qs8_A 85 KVEREMQAILATQHAYVTFKSGFTTVRQVGDSGL--VAISLRDAINSGKLAGPRIFAAGKTIATTGGHADPTNGKAVDDY 162 (418)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTEEEEEECCCSSS--HHHHHHHHHHTTSSCCCEEEECCSCBEETTCTTCTTTTCCGGGC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcc--ccHHHHHHHHCCCCCCCeEEecCccccccCCCcccccccccccc
Confidence 2333322 2467789999999999854321 2223333333332 111100 00000
Q ss_pred --------eecCChhhHHHHHHHHHHcCCcEEEEEeee--------CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009282 177 --------ITKWDEVVSDEMEVMVKEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (538)
Q Consensus 177 --------~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (538)
.....++..+.+++.. ..|.+.+|++.+. .+...++.+.++++++.|+++|+++.+|+.+...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ik~~~~g~~~~~~~~~g~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 241 (418)
T 2qs8_A 163 DYPVPEQGVVNGPYEVYAAVRQRY-KDGADGIKITVTGGVLSVAKSGQNPQFTQEEVDAVVSAAKDYGMWVAVHAHGAEG 241 (418)
T ss_dssp CCCCGGGTEECSHHHHHHHHHHHH-HHTCSEEEEECBCCSSSSSSCSSCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred ccccccccccCCHHHHHHHHHHHH-HcCCCEEEEEecCCCCCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 0000012222333333 4688999998753 1345678999999999999999999999986644
Q ss_pred HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccc
Q 009282 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (538)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~ 320 (538)
+...+ +.| .. .+.|+..... +.++++++.|+.+. +.. ..
T Consensus 242 i~~~~----~~g-------------------------------~~-~i~H~~~~~~-~~i~~l~~~gv~v~--p~~--~~ 280 (418)
T 2qs8_A 242 MKRAI----KAG-------------------------------VD-SIEHGTFMDL-EAMDLMIENGTYYV--PTI--SA 280 (418)
T ss_dssp HHHHH----HHT-------------------------------CS-EEEECTTCCH-HHHHHHHHHTCEEE--CCH--HH
T ss_pred HHHHH----HcC-------------------------------CC-EEEECCCCCH-HHHHHHHHCCCEEe--eee--ch
Confidence 33222 112 22 4788887665 88899998887543 321 10
Q ss_pred cCcccccCCCcccccceeecCCCCC-c-------ccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcc
Q 009282 321 LDDSWLWHSDFVTAAKYVMSPPIRA-S-------GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~-~-------~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g 392 (538)
... .. ..+ .....|+.+. . .....++.++++|+++++|||+.. ++... .
T Consensus 281 ~~~--~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~v~~gTD~~~-~~~~~-----~---------- 337 (418)
T 2qs8_A 281 GEF--VA----EKS-KIDNFFPEIVRPKAASVGPQISDTFRKAYEKGVKIAFGTDAGV-QKHGT-----N---------- 337 (418)
T ss_dssp HHH--HH----HHT-TSTTSSCTTTHHHHHHHHHHHHHHHHHHHHHTCCBCCCCCBTT-BCTTC-----T----------
T ss_pred HHH--hh----hhc-cccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeCCCCc-CCcch-----H----------
Confidence 000 00 000 0001122111 0 113567889999999999999742 11100 0
Q ss_pred hhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCe
Q 009282 393 IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGR 472 (538)
Q Consensus 393 ~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~ 472 (538)
...++.+++. ++|++++|+++|.|||+++|+++++|+|++||.|||||+|.|++.++..
T Consensus 338 -----~~e~~~~~~~-gls~~eal~~~T~n~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~~~--------------- 396 (418)
T 2qs8_A 338 -----WKEFVYMVEN-GMPAMKAIQSATMETAKLLRIEDKLGSIESGKLADLIAVKGNPIEDISV--------------- 396 (418)
T ss_dssp -----THHHHHHHHT-TCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTTCGGG---------------
T ss_pred -----HHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCCCCCcccCCCCccCEEEECCChhhCHHH---------------
Confidence 0111123344 6999999999999999999998889999999999999999987654422
Q ss_pred EEeeEEEEEEECCEEEEE
Q 009282 473 RVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 473 ~~~~~v~~V~v~G~~V~~ 490 (538)
..+|+.||++|+++..
T Consensus 397 --~~~i~~v~~~G~~~~~ 412 (418)
T 2qs8_A 397 --LENVDVVIKDGLLYEG 412 (418)
T ss_dssp --GGGEEEEEETTEEEEC
T ss_pred --hcCccEEEECCEEEec
Confidence 3579999999998864
|
| >3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=315.25 Aligned_cols=388 Identities=19% Similarity=0.258 Sum_probs=237.1
Q ss_pred cccEEEECcEEE-cCCC----ceeeeEEEeCCEEEEecCCCCCC-CCceEEecCCCeeeccccccccccccccCC-----
Q 009282 52 SSKILIKGGTVV-NAHH----QQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFMG----- 120 (538)
Q Consensus 52 ~~~~~i~n~~vv-~~~~----~~~~~V~I~~grI~~Vg~~~~~~-~~~~vID~~G~~v~PGlID~H~H~~~~~~~----- 120 (538)
+.+++|+|++|+ |+++ .++++|+|+||||++||+..+.+ .+.++||++|++|+|||||+|+|+......
T Consensus 28 p~~llI~na~vi~T~D~~~~vi~~gdV~I~dgrI~aVG~~~~~~~~~~~vIDa~G~~v~PG~ID~H~H~~~~~~~g~~~~ 107 (479)
T 3hpa_A 28 PKTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAA 107 (479)
T ss_dssp -CEEEEEEEEEEECCCTTCCEEEEEEEEEETTEEEEEEEGGGSCSCCSEEEECTTEEEEECEEECCCCGGGGGSCSCTTT
T ss_pred CCCEEEECCEEEEeeCCCCCEEcCcEEEEECCEEEEEeCCccCCCCCCeEEECCCCEEeeCceeHhhCcchhcccccccC
Confidence 678999999965 5553 26899999999999999876554 467899999999999999999998654210
Q ss_pred -----------------CCChhhH----HHHHHHHHhCCcEEEecccCCCCC--CHHHHHHHHHHHhcccceeeeeeee-
Q 009282 121 -----------------SETIDDF----FSGQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKNSCMDYGFHMA- 176 (538)
Q Consensus 121 -----------------~~~~~~~----~~~~~~~l~~GvTt~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 176 (538)
....+.. ......++..|+|++.+....... ............+.+..........
T Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (479)
T 3hpa_A 108 QNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSVG 187 (479)
T ss_dssp TTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEECCBCCCCTTCCHHHHHHHHHHHTCEEEEEEEECC--
T ss_pred CCcchHHHHhhhhhhhhhcCHHHHHHHHHHHHHHHHHhCCceecceeeeccchhhHHHHHHHHHHhcchhhhhhheeecc
Confidence 0111111 122445678999999987543332 3444555544444332221111100
Q ss_pred ----------eecCChhhHHHHHHHHHH---cC-CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHH
Q 009282 177 ----------ITKWDEVVSDEMEVMVKE---KG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVF 242 (538)
Q Consensus 177 ----------~~~~~~~~~~~~~~~~~~---~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~ 242 (538)
......+.......+... .+ ................+.+.+.++...|.+.|..+.+|......
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~-- 265 (479)
T 3hpa_A 188 QRDGGLPPDSVVEREPDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLAENVN-- 265 (479)
T ss_dssp --------------CHHHHHHHHHHHHHHCCCSTTCSEEEEEEESCTTTSCHHHHHHHHHHHHHHTCEEEEEESCSHH--
T ss_pred ccccCCCchhhhhhhhhHHHHHHHHHHHhhhhcccccceeEecccccccCCHHHHHHHHHHHHhcCCeEEeecccchH--
Confidence 000111222222222211 11 12233444555666778999999999999999999999854321
Q ss_pred HHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccC
Q 009282 243 EGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLD 322 (538)
Q Consensus 243 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~ 322 (538)
+........|.. ...........+.+..+.|+..... .....+++.+..+..++.....
T Consensus 266 ~~~~~~~~~g~~-----------------~~~~~~~~~~~~~~~~~~h~~~~~~-~~~~~~~~~~~~~~~~p~~~~~--- 324 (479)
T 3hpa_A 266 DIAYSREKFGMT-----------------PAEYAEDLGWVGHDVWHAHCVQLDD-AGIGLFARTGTGVAHCPCSNMR--- 324 (479)
T ss_dssp HHHC-------C-----------------HHHHHHHTTCCSTTEEEEECTTCCH-HHHHHHHHHTCEEEECHHHHHH---
T ss_pred HHHHHHHHcCCc-----------------hHHHHhhhccccccceeeeeEecch-hHHHHHHhcCCceeeccccccc---
Confidence 111111111111 0111111233456788899887665 6677788888777766553111
Q ss_pred cccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHH-
Q 009282 323 DSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW- 401 (538)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~- 401 (538)
.+... ++ ...+.+.|+++++|||....++... ...+......+
T Consensus 325 ----------~~~~~---~~---------~~~~~~~~~~v~~gtD~~~~~~~~~--------------~~~~~~~~~~~~ 368 (479)
T 3hpa_A 325 ----------LASGI---AP---------VKKMRLAGVPVGLGVDGSASNDGAQ--------------MVAEVRQALLLQ 368 (479)
T ss_dssp ----------TTCCC---CC---------HHHHHHHTCCEEECCCCTTSSCCCC--------------HHHHHHHHHHHH
T ss_pred ----------cccCc---cc---------hhHHHhcCCcEEeeccccccCCCcc--------------HHHHHHHHHHHH
Confidence 00111 11 5677888999999999765543211 01122222222
Q ss_pred HHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEE
Q 009282 402 DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVT 481 (538)
Q Consensus 402 ~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V 481 (538)
......+++|++++|+++|.|||++||++ ++|+|++||.|||||||.+.++...+. .++.....|.+ .++|.+|
T Consensus 369 ~~~~~~~~ls~~eal~~~T~~~A~~lgl~-~~G~I~~G~~ADlvv~D~~~~~~~~~~--~dp~~~lv~~~---~~~v~~t 442 (479)
T 3hpa_A 369 RVGFGPDAMTAREALEIATLGGAKVLNRD-DIGALKPGMAADFAAFDLRQPLFAGAL--HDPVAALVFCA---PSQTAYT 442 (479)
T ss_dssp HHHHCTTSCCHHHHHHHTTHHHHHHHTCS-SSSSCSTTSBCCEEEEETTSGGGTTCT--TSHHHHHHHSS---CCCCSEE
T ss_pred hhhccccCCCHHHHHHHHHHHHHHHhCCC-CCccCCCCCcCCEEEEcCCCccccCCc--cCHHHHhhccC---CCCceEE
Confidence 12335567999999999999999999994 689999999999999999876554321 11111112322 3579999
Q ss_pred EECCEEEEECCeeeccCCCceEee
Q 009282 482 IAGGRVVWENDELNVVPGSGKYIE 505 (538)
Q Consensus 482 ~v~G~~V~~~~~~~~~~~~~~~~~ 505 (538)
||||++||+||++++.| .++.++
T Consensus 443 iV~G~~V~~dG~~~~~D-~~~~~~ 465 (479)
T 3hpa_A 443 VVNGKVVVREGRLATLD-LPPVIE 465 (479)
T ss_dssp EETTEEEEETTEECSSC-HHHHHH
T ss_pred EECCEEEEECCcCCCCC-HHHHHH
Confidence 99999999999999988 444443
|
| >4aql_A Guanine deaminase; hydrolase, purine metabolism; HET: TXC; 1.99A {Homo sapiens} PDB: 2uz9_A* 3e0l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=313.03 Aligned_cols=382 Identities=17% Similarity=0.140 Sum_probs=242.3
Q ss_pred cccEEEECcEEEcCCC-----ceeeeEEEeC-CEEEEecCCCCC--------CCCceEEec-CCCeeecccccccccccc
Q 009282 52 SSKILIKGGTVVNAHH-----QQIADVYVED-GIVVAVQPNINV--------GDDVKVLDA-TGKFVMPGGIDPHTHLAM 116 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~-----~~~~~V~I~~-grI~~Vg~~~~~--------~~~~~vID~-~G~~v~PGlID~H~H~~~ 116 (538)
+.+++|+|..|.+... .++++|+|+| |||++|++..+. .++.++||+ +|++|+|||||+|+|+.+
T Consensus 30 ~~~~~~~g~~i~~~~~~~~~~~~~~~v~I~~~g~I~~vg~~~~~~~~~~~~~~~~~~viD~~~g~~v~PG~ID~H~H~~~ 109 (476)
T 4aql_A 30 PLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHASQ 109 (476)
T ss_dssp -CCEEEEEEEEECCSSCSCEEEEEEEEEECTTSBEEEEEEGGGHHHHHHHTTCCGGGCEECCTTCEEEECEEEEEEEGGG
T ss_pred CccEEEEccEEecCCCCceeEecCcEEEEecCCeEEEecCcchhhhhhhhccCCCceEEEcCCCCEEeCCeeccccchHH
Confidence 4678999999987643 2689999998 999999986321 235789995 599999999999999865
Q ss_pred ccC-CC---C-----------------Chhh----HHH-HHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhccccee
Q 009282 117 EFM-GS---E-----------------TIDD----FFS-GQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMD 170 (538)
Q Consensus 117 ~~~-~~---~-----------------~~~~----~~~-~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (538)
... +. . +.++ .+. ....++++||||+.++............++..+.+.+..+.
T Consensus 110 ~~~rg~~~d~~l~~wL~~~~~p~e~~~~~~~~~~~~~~~~~~e~l~~G~Tt~~~~~~~~~~~~~~~~~a~~~~G~r~~~~ 189 (476)
T 4aql_A 110 YSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVG 189 (476)
T ss_dssp GGGTTSCCCSCHHHHHHHTHHHHHHGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCCCHHHHHHHhhhhHHHhcCCHHHHHHHHHHHHHHHHHCCeeEEEEecccCchHHHHHHHHHHHhCCEEEEe
Confidence 421 10 0 1111 111 23467899999999764332222233455556666554433
Q ss_pred eeeeeee------ecCChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC-hhh
Q 009282 171 YGFHMAI------TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDA 240 (538)
Q Consensus 171 ~~~~~~~------~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~-~~~ 240 (538)
....... ....++.+++..++.+ ..+...++..+.++..+.++++.++++++.|+++|+++.+|+.+ ..+
T Consensus 190 ~~~~d~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~~~v~~~l~p~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~e 269 (476)
T 4aql_A 190 KVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDE 269 (476)
T ss_dssp CEECSCCSSCTTSCCCHHHHHHHHHHHHHHHHHHTCSSEEECBEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSHHH
T ss_pred eccccCCCCCcccccCHHHHHHHHHHHHHHHhcCCCCceEEEEeCCcCCcCCHHHHHHHHHHHHHcCCceEEEecCCHHH
Confidence 2221111 1111333444444432 23456788888888888889999999999999999999999954 433
Q ss_pred HHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccc
Q 009282 241 VFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLV 320 (538)
Q Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~ 320 (538)
+....+ .++... ...+.+......+.++.+.|+....+ +.++++++.|+.+..||.+
T Consensus 270 ~~~~~~---~~~~~~---------------~~~~~~~~~g~l~~~~~~~H~~~l~~-~~~~~l~~~g~~v~~~P~s---- 326 (476)
T 4aql_A 270 VEAVKN---LYPSYK---------------NYTSVYDKNNLLTNKTVMAHGCYLSA-EELNVFHERGASIAHCPNS---- 326 (476)
T ss_dssp HHHHHH---HCTTSS---------------SHHHHHHTTTCCSTTEEEEECTTCCH-HHHHHHHHHTCEEEECHHH----
T ss_pred HHHHHH---HhCCCC---------------CHHHHHHHcCCCCCCEEEEeCCCCCH-HHHHHHHHcCCEEEECchh----
Confidence 333332 222100 01112222334466888999998877 8899999999999998875
Q ss_pred cCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHH
Q 009282 321 LDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLV 400 (538)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~ 400 (538)
++..+.+. .+++.+++.|+++++|||..+.+.. . .+. ++.....
T Consensus 327 ---------n~~l~~g~------------~p~~~~~~~Gv~v~lGtD~~~~~~~-~-----~~~---------~~~~a~~ 370 (476)
T 4aql_A 327 ---------NLSLSSGF------------LNVLEVLKHEVKIGLGTDVAGGYSY-S-----MLD---------AIRRAVM 370 (476)
T ss_dssp ---------HHHTTCCC------------CCHHHHHHTTCEEEECCCTTTSSCC-C-----HHH---------HHHHHHH
T ss_pred ---------hhhhCcch------------HHHHHHHHCCCcEEEeCCCCCCCCC-C-----HHH---------HHHHHHH
Confidence 22222221 1278899999999999997532211 1 111 1222222
Q ss_pred HHHhh-----hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCc----ccCCCCCCccCC
Q 009282 401 WDTMV-----ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARS----HHSRLDTNVYEG 471 (538)
Q Consensus 401 ~~~~~-----~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~----~~~~~~~~~~~~ 471 (538)
+.+.. ...+++++++|+++|.|||+++|+++++|+|++||.|||||+|.+.+.. +... ..+.....|+.+
T Consensus 371 ~~~~~~~~~~~~~~l~~~~al~~aT~~~A~~lgl~~~~G~l~~G~~ADlvv~d~~~~~~-p~~~~~~~~~~~~~~~~~~~ 449 (476)
T 4aql_A 371 VSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDS-PIDLFYGDFFGDISEAVIQK 449 (476)
T ss_dssp HHHHHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSSCCTTSBCCEEEECTTCTTC-SCCCCTHHHHSSSTTHHHHH
T ss_pred HHhhhhcccCCCCcCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCCCCEEEEcCCCCCC-ccccccccccCCchhcHHHH
Confidence 21221 2357999999999999999999998889999999999999999885321 0000 000001122222
Q ss_pred eEE---eeEEEEEEECCEEEEECCe
Q 009282 472 RRV---KGKVEVTIAGGRVVWENDE 493 (538)
Q Consensus 472 ~~~---~~~v~~V~v~G~~V~~~~~ 493 (538)
... ..+|..||++|++||+.+.
T Consensus 450 ~v~~~~~~~V~~v~v~G~~v~~~~~ 474 (476)
T 4aql_A 450 FLYLGDDRNIEEVYVGGKQVVPFSS 474 (476)
T ss_dssp HHHHCCGGGEEEEEETTEEEECCC-
T ss_pred HhhcCCCCCccEEEECCEEEecCCC
Confidence 111 2469999999999998643
|
| >2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo 4YL)-propionic acid, PSI-2 community, structural genomics, structure initiative; HET: DI6; 1.97A {Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=306.80 Aligned_cols=347 Identities=15% Similarity=0.124 Sum_probs=219.0
Q ss_pred ccEEEECcEEEcCCC-----c--eeeeEEEeCCEEEEecCCCCCCC--CceEEecCCCeeeccccccccccccccCC---
Q 009282 53 SKILIKGGTVVNAHH-----Q--QIADVYVEDGIVVAVQPNINVGD--DVKVLDATGKFVMPGGIDPHTHLAMEFMG--- 120 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~-----~--~~~~V~I~~grI~~Vg~~~~~~~--~~~vID~~G~~v~PGlID~H~H~~~~~~~--- 120 (538)
++++|+|++|+|+++ . .+++|+|+||||++||+....+. +.++||++|++|+|||||+|+|+......
T Consensus 5 ~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~~~~ 84 (416)
T 2q09_A 5 CERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTPGLIDCHTHLIFAGSRAEE 84 (416)
T ss_dssp CSEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--CCTTSEECTTCEEEECEEEEEECCCCCSCCHHH
T ss_pred ccEEEEcCeEeccCcccccccccccceEEEECCEEEEEcChhhccccCCCeEEeCCCCEECCcccccccCcchhhhhHHH
Confidence 578999999999765 2 57899999999999998654433 46799999999999999999998764110
Q ss_pred ----------------------------CCChhhHHHH----HHHHHhCCcEEEecccCCCCC--CHHHHHHHHHHHhcc
Q 009282 121 ----------------------------SETIDDFFSG----QAAALAGGTTMHIDFVIPING--SLTAGFEAYEKKAKN 166 (538)
Q Consensus 121 ----------------------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~--~~~~~~~~~~~~~~~ 166 (538)
..+++.+... .+.++++||||++++...... .....++...+....
T Consensus 85 ~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2q09_A 85 FELRQKGVPYAEIARKGGGIISTVRATRAASEDQLFELALPRVKSLIREGVTTVEIKSGYGLTLEDELKMLRVARRLGEA 164 (416)
T ss_dssp HHHHHTTCCHHHHHHTTCTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTEEEEEEECCSCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHhhhcCCcEeehhhhccCCCHHHHHHHHHHHHHHHHHcCCcEEEeccCcccChHhHHHHHHHHHHHHhh
Confidence 0133333322 366789999999997432211 112333333333222
Q ss_pred cceeee--eee--eee-cC---ChhhHHHHH-HHHH---HcC-CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEE
Q 009282 167 SCMDYG--FHM--AIT-KW---DEVVSDEME-VMVK---EKG-INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (538)
Q Consensus 167 ~~~~~~--~~~--~~~-~~---~~~~~~~~~-~~~~---~~g-~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 233 (538)
..+.+. +.. ... .. .++..+... .+.. ..+ .+.++.+ .+...++.+.++++++.|+++|+++.+
T Consensus 165 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~g~~v~~ 241 (416)
T 2q09_A 165 LPIRVKTTLLAAHAVPPEYRDDPDSWVETICQEIIPAAAEAGLADAVDVF---CEHIGFSLAQTEQVYLAADQYGLAVKG 241 (416)
T ss_dssp SSSEEEEEEEEETSCCGGGTTCHHHHHHHHHHTHHHHHHHTTCCSEEEEB---BSTTSBCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEeeeccccCCccccCCHHHHHHHHHhhhhHHHHhcccccccccc---cCCCcCCHHHHHHHHHHHHHCCCcEEE
Confidence 111111 110 011 00 111222111 1111 223 4455443 233456899999999999999999999
Q ss_pred EcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEe
Q 009282 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGE 313 (538)
Q Consensus 234 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~ 313 (538)
|+....... ..+.+ ...+.. .+.|+...++ +.++++++.|+.++.+
T Consensus 242 H~~~~~~~~-~~~~~-------------------------------~~~g~~-~~~H~~~~~~-~~~~~~~~~g~~~~~~ 287 (416)
T 2q09_A 242 HMDQLSNLG-GSTLA-------------------------------ANFGAL-SVDHLEYLDP-EGIQALAHRGVVATLL 287 (416)
T ss_dssp EESSSCCCS-HHHHH-------------------------------HHTTCS-EEEECTTCCH-HHHHHHHHHTCEEEEC
T ss_pred EECCCCchH-HHHHH-------------------------------HHcCCC-EEeecccCCH-HHHHHHHHcCCeEEEc
Confidence 996532100 11111 112322 4788887776 8899999999887776
Q ss_pred ccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcch
Q 009282 314 PVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGI 393 (538)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~ 393 (538)
|.....+ . +. ..++ ++.++++|+++++|||+.+....
T Consensus 288 p~~~~~~-----------~-~~---~~~~---------~~~~~~~Gv~~~~gtD~~~~~~~------------------- 324 (416)
T 2q09_A 288 PTAFYFL-----------K-ET---KLPP---------VVALRKAGVPMAVSSDINPGTAP------------------- 324 (416)
T ss_dssp HHHHHHT-----------T-CC---CCCC---------HHHHHHTTCCEEECCCCBTTTBC-------------------
T ss_pred CccHHhh-----------c-cc---cccC---------HHHHHHCCCeEEEecCCCCccCC-------------------
Confidence 6532110 0 00 1112 78899999999999997542110
Q ss_pred hhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeE
Q 009282 394 EERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR 473 (538)
Q Consensus 394 ~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (538)
...+...++.++...++|++++|+++|.|||+++|+++++|+|++||.|||||+|.|++..+ ++...
T Consensus 325 ~~~~~~~~~~~~~~~~l~~~~al~~~T~~~A~~lg~~~~~G~l~~G~~ADlvvld~~~~~~~------------~~~~~- 391 (416)
T 2q09_A 325 IVSLRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQEQLGQLRVGMLADFLVWNCGHPAEL------------SYLIG- 391 (416)
T ss_dssp CCCHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSSCTTHH------------HHSCS-
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCccceecCCCCCccEEEECCCchhhh------------hhhhc-
Confidence 00122223334444569999999999999999999988899999999999999998876432 23222
Q ss_pred EeeEEEEEEECCEEEEECCe
Q 009282 474 VKGKVEVTIAGGRVVWENDE 493 (538)
Q Consensus 474 ~~~~v~~V~v~G~~V~~~~~ 493 (538)
..+|..||++|++||+++.
T Consensus 392 -~~~v~~v~v~G~~v~~~~~ 410 (416)
T 2q09_A 392 -VDQLVSRVVNGEETLHGEG 410 (416)
T ss_dssp -CCCEEEEEETTEECCC---
T ss_pred -cCcceEEEECCEEEEeCCC
Confidence 3579999999999998753
|
| >2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrola 9244B, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=315.24 Aligned_cols=359 Identities=18% Similarity=0.136 Sum_probs=219.7
Q ss_pred cCcccEEEECcEEEcCCC---ceeeeEEEe-CCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChh
Q 009282 50 QSSSKILIKGGTVVNAHH---QQIADVYVE-DGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125 (538)
Q Consensus 50 ~~~~~~~i~n~~vv~~~~---~~~~~V~I~-~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~ 125 (538)
.|+++++|+|++|++++. ..+++|+|+ ||||++|++..+.+.+.++||++|++|+|||||+|+|+..+ +....+
T Consensus 12 ~~~~~~li~n~~vv~~~~~~~~~~~~v~I~~~g~I~~Ig~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~ 89 (417)
T 2ogj_A 12 PLQAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHG--GTDISI 89 (417)
T ss_dssp --CCCEEEEEEEECSSCTTCCCSCEEEEECTTSBEEEEETTCCCSSCEEECCC--CEEEECEEEEEECCCBT--TBSSCC
T ss_pred cCCCcEEEECCEEEcCCCCccCccceEEEecCCEEEEeccCCCCCCCCeEEECCCCEEccCeeecccccccc--ccccCC
Confidence 334679999999999875 368899999 99999999764433356899999999999999999999875 211111
Q ss_pred hHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc---ccceeeeeeeeee-----cCC---hhhHHHHHHHHHH
Q 009282 126 DFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK---NSCMDYGFHMAIT-----KWD---EVVSDEMEVMVKE 194 (538)
Q Consensus 126 ~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~ 194 (538)
. ....++++||||++|++...........+...+... ..++.+....... ... ....+++.++.+.
T Consensus 90 ~---~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~~e~~~~~~~~~~~~~~~~~~ 166 (417)
T 2ogj_A 90 R---PSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAE 166 (417)
T ss_dssp C---GGGTSGGGTEEEEEEESSCCSTTHHHHHHHTTTTCSSEEEEEEESSTTTTTTTTTSCSCSSGGGCCHHHHHHHHHT
T ss_pred C---HHHHHHhCCcCeEEeCCcCCCcCHHHHHHHHhhccccCeEEEeccccCcCCCCCCcccccchhhcCHHHHHHHHHh
Confidence 1 123578999999999864333222121221111111 1111111100000 000 0123445555533
Q ss_pred c--CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh-HHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 195 K--GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-VFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 195 ~--g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
. +...+|++..+......+.+.+++.++.|+++|+++.+|+.+... ..+....
T Consensus 167 ~~~~~~~ik~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~------------------------ 222 (417)
T 2ogj_A 167 NSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEI------------------------ 222 (417)
T ss_dssp CTTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHHHTCCEEEEECSSSSCHHHHHHH------------------------
T ss_pred CCCceEEEEEEecCCccccccHHHHHHHHHHHHHcCCcEEEEcCCCcccHHHHHHH------------------------
Confidence 2 345678776643334457788899999999999999999965321 2111111
Q ss_pred HHHHHHHHHHcCCCEEEEeccC----------HHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMS----------MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~----------~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
.+....+.|+.. ....+.+.++++.|+.+..++.. ..
T Consensus 223 ----------l~~g~~~~H~~~~~~~~~~~~~~~~~~~i~~~~~~g~~v~~~~~~------------------~~----- 269 (417)
T 2ogj_A 223 ----------LGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGG------------------AS----- 269 (417)
T ss_dssp ----------CCTTCEEETTTCCCTTTCTTSCHHHHHHHHHC--CCCEEECCBCS------------------SS-----
T ss_pred ----------hcCCCEEEeccCCCccchhccCHHHHHHHHHHHhcCcEEEecCCC------------------cc-----
Confidence 111135666543 11235666677777655333221 00
Q ss_pred CCCCcccHHHHHHHHhcC-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHh
Q 009282 342 PIRASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT 420 (538)
.....++.++++| ++++++||+. .+.. .| ....+...+++++. .++|++++++++|
T Consensus 270 -----~~~~~~~~~~~~G~~~~~lgtD~~-~~~~-------------~g---~~~~l~~~~~~~~~-~~l~~~~al~~~T 326 (417)
T 2ogj_A 270 -----FSFKVAEAAIARGLLPFSISTDLH-GHSM-------------NF---PVWDLATTMSKLLS-VDMPFENVVEAVT 326 (417)
T ss_dssp -----CCHHHHHHHHHTTCCCSBCCBCBS-TTTT-------------TT---TCCCHHHHHHHHHH-TTCCHHHHHHTTT
T ss_pred -----ccchHHHHHHHcCCCceEEEcCCC-CCcc-------------CC---ChhHHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 0235588999999 9999999976 4210 00 01124444444444 4599999999999
Q ss_pred HhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEee----EEEEEEECCEEEEECCeeec
Q 009282 421 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG----KVEVTIAGGRVVWENDELNV 496 (538)
Q Consensus 421 ~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~V~v~G~~V~~~~~~~~ 496 (538)
.|||++||+++ +|+|++||.|||||+|.+.++.. +.++.+..+.+ +|..||++|++||++++++.
T Consensus 327 ~n~A~~lgl~~-~G~l~~G~~ADlvv~d~~~~~~~----------~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~~~ 395 (417)
T 2ogj_A 327 RNPASVIRLDM-ENRLDVGQRADFTVFDLVDADLE----------ATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYIPR 395 (417)
T ss_dssp HHHHHHTTCCC-SSTTSTTSBCEEEEEEEEEEEEE----------EECTTSCEEEEEEEEEEEEEEETTEEEECCCCCCC
T ss_pred HHHHHHhCCCC-CCccCCCCcccEEEEecccCCce----------ecCCCCceEecccccceEEEEECCEEEEeCCccch
Confidence 99999999966 99999999999999997654321 22445554444 89999999999999999988
Q ss_pred cCCCceEeecC
Q 009282 497 VPGSGKYIEMR 507 (538)
Q Consensus 497 ~~~~~~~~~~~ 507 (538)
.. +++++.
T Consensus 396 ~~---~~~~~~ 403 (417)
T 2ogj_A 396 AR---KLVRHS 403 (417)
T ss_dssp C----------
T ss_pred HH---HHHHHh
Confidence 65 666654
|
| >1ra0_A Cytosine deaminase; alpha-beta barrel, hexamer, conformation change, D314G mutant, hydrolase; 1.12A {Escherichia coli} SCOP: b.92.1.2 c.1.9.5 PDB: 1r9x_A 1ra5_A 1r9y_A 1r9z_A 1rak_A 3r0d_A* 3o7u_A* 3rn6_A* 1k6w_A 1k70_A 3g77_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=312.19 Aligned_cols=367 Identities=18% Similarity=0.186 Sum_probs=224.7
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCC-CCceEEecCCCeeeccccccccccccccC-C---------
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVG-DDVKVLDATGKFVMPGGIDPHTHLAMEFM-G--------- 120 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~-~~~~vID~~G~~v~PGlID~H~H~~~~~~-~--------- 120 (538)
+++++|+|++|++++ .+++|+|+||||++||+....+ ++.++||++|++|+|||||+|+|+..... +
T Consensus 7 ~~~~li~n~~v~~~~--~~~~v~I~~g~I~~vg~~~~~~~~~~~viD~~G~~v~PGlID~H~Hl~~~~~~~~~~~~~~~~ 84 (430)
T 1ra0_A 7 NALQTIINARLPGEE--GLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGT 84 (430)
T ss_dssp -CCCEEEEEBCTTCC--SEEEEEEETTEEEEEEEESSCCCCCTTEEECTTCEEESCEEEEEECTTTTTCTTSSSCCSSCC
T ss_pred CCcEEEEeeEecCCC--ceeEEEEECCEEEEeecCCCCCCCCcceEccCCCEecccccccccchhhhhhcCCCcCCCCCC
Confidence 467899999999976 6889999999999999765433 45789999999999999999999975421 1
Q ss_pred -------------CCChhhHHHH----HHHHHhCCcEEEecccCCCCCC--HHHHHHHHHHHhcccceeeeeee-ee-ec
Q 009282 121 -------------SETIDDFFSG----QAAALAGGTTMHIDFVIPINGS--LTAGFEAYEKKAKNSCMDYGFHM-AI-TK 179 (538)
Q Consensus 121 -------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 179 (538)
..+++++... +..++++||||++|+....... ..+.+....+. .+..+.+.+.. .. ..
T Consensus 85 ~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 163 (430)
T 1ra0_A 85 LFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAMLEVKQE-VAPWIDLQIVAFPQEGI 163 (430)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHHHHHHHHHH-HTTTCEEEEEEECTTCS
T ss_pred HHHHHHHhHHhhhhcCHHHHHHHHHHHHHHHHhcCccEEeeccccCChHHHHHHHHHHHHHh-hhhhEEEEEEecCCccc
Confidence 0123444333 3445799999999986431211 12222211111 12333332211 00 01
Q ss_pred C-ChhhHHHHHHHHHHcCCcEEEEEeeeCCCcc--CCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCCC
Q 009282 180 W-DEVVSDEMEVMVKEKGINSFKFFMAYKGSFM--INDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITG 255 (538)
Q Consensus 180 ~-~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~--~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~~ 255 (538)
. ..+..+.++++. +.|...+... ....+. .+.+.++++++.|+++|+++.+|+.+. ......++
T Consensus 164 ~~~~~~~~~~~~~~-~~g~~~~~~~--~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~e~~~~~~~~~~--------- 231 (430)
T 1ra0_A 164 LSYPNGEALLEEAL-RLGADVVGAI--PHFEFTREYGVESLHKTFALAQKYDRLIDVHCDEIDDEQSRFVE--------- 231 (430)
T ss_dssp SSSTTHHHHHHHHH-HTTCSEECCC--GGGSSSHHHHHHHHHHHHHHHHHHTCEEEEEECCSSCTTCCHHH---------
T ss_pred ccCchHHHHHHHHH-HhCCCeEeee--ecccccccccHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHH---------
Confidence 1 223344455555 4555444322 222222 578899999999999999999999543 22111111
Q ss_pred cccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHH------HHHHHHHHcCCcEEEeccccccccCcccccCC
Q 009282 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAM------EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHS 329 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~------~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~ 329 (538)
.+.+.+.... .+.++++.|+...... +.++++++.|+.++.+|..... +...
T Consensus 232 ---------------~~~~~~~~~g-~~~~~~i~H~~~~~~~~~~~~~~~i~~~~~~gv~v~~~p~~~~~-~~~~----- 289 (430)
T 1ra0_A 232 ---------------TVAALAHHEG-MGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIH-LQGR----- 289 (430)
T ss_dssp ---------------HHHHHHHHHT-CGGGEEEEECGGGGGSCHHHHHHHHHHHHHHTCEEEECHHHHHH-HTTT-----
T ss_pred ---------------HHHHHHHHhC-CCCCEEEEeccccccCChHhHHHHHHHHHHcCCEEEECchhhhh-hccc-----
Confidence 1111111111 2456789998876542 4889999999988877653221 1110
Q ss_pred CcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCC-Ccch-hhhHHHHHHHhhhc
Q 009282 330 DFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNG-VNGI-EERMHLVWDTMVES 407 (538)
Q Consensus 330 ~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g-~~g~-~~~~~~~~~~~~~~ 407 (538)
....|+.+.. ..++.++++|+++++|||+.+.+.. +.+ ..-+ +..+...+..+ .
T Consensus 290 -------~~~~p~~~~~---~~~~~~~~~Gv~~~lgTD~~~~~~~------------~~~~~~~~~~~~~~~~~~~~--~ 345 (430)
T 1ra0_A 290 -------FDTYPKRRGI---TRVKEMLESGINVCFGHDGVFDPWY------------PLGTANMLQVLHMGLHVCQL--M 345 (430)
T ss_dssp -------TCCSSCCCCC---CCHHHHHHTTCCEEECCBCSSBTTB------------SCCCCCHHHHHHHHHHHTTC--C
T ss_pred -------cCCCCCcCCC---CCHHHHHHCCCEEEEeCCCCcccCC------------CCCCCCHHHHHHHHHHHHcc--C
Confidence 0001222111 2367899999999999998631100 000 0000 11111111110 1
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEE
Q 009282 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 487 (538)
Q Consensus 408 ~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~ 487 (538)
.++|++++|+++|.|||+++|+++ |+|++||.|||||+|.++++... . ...+|..||++|++
T Consensus 346 ~~~~~~~al~~~T~~~A~~lg~~~--G~i~~G~~ADlvv~d~~~~~~~~-------------~---~~~~v~~v~~~G~~ 407 (430)
T 1ra0_A 346 GYGQINDGLNLITHHSARTLNLQD--YGIAAGNSANLIILPAENGFDAL-------------R---RQVPVRYSVRGGKV 407 (430)
T ss_dssp SHHHHHGGGGGGTHHHHHHTTCSS--CSSCTTSBCCEEEESSSSHHHHH-------------H---HTCCCSEEEETTEE
T ss_pred CcccHHHHHHHHHHHHHHHhCCCC--cccCCCCcCCEEEEcCCChhHHH-------------h---ccCcceEEEECCEE
Confidence 236999999999999999999964 99999999999999987653110 0 13579999999999
Q ss_pred EEECCeeecc
Q 009282 488 VWENDELNVV 497 (538)
Q Consensus 488 V~~~~~~~~~ 497 (538)
||++++++..
T Consensus 408 v~~~~~~~~~ 417 (430)
T 1ra0_A 408 IASTQPAQTT 417 (430)
T ss_dssp EEECCCCCEE
T ss_pred EecCCcceee
Confidence 9999987743
|
| >2ics_A Adenine deaminase; TIM barrel, binuclear zinc, adenine complex, amidohydrolase, structural genomics, PSI, protein structure initiative; HET: KCX ADE; 2.30A {Enterococcus faecalis} SCOP: b.92.1.8 c.1.9.14 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=311.36 Aligned_cols=354 Identities=17% Similarity=0.116 Sum_probs=221.8
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCC-CeeeccccccccccccccCCCCChhhHHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATG-KFVMPGGIDPHTHLAMEFMGSETIDDFFSG 130 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G-~~v~PGlID~H~H~~~~~~~~~~~~~~~~~ 130 (538)
+++++|+|++|++++ +++|+|+||||++|++... +++.++||++| ++|+|||||+|+|+..+ +....+ ..
T Consensus 4 ~~~~~i~~~~v~~~~---~~~v~i~~g~I~~ig~~~~-~~~~~~iD~~g~~~v~PG~ID~H~H~~~~--~~~~~~---~~ 74 (379)
T 2ics_A 4 DYDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATIS-GSAKETIHLEPGTYVSAGWIDDHVHCFEK--MALYYD---YP 74 (379)
T ss_dssp CEEEEEEEEECTTSC---EEEEEEETTEEEEEESCCC-CCEEEEEECCTTCEEEECEEEEEECCCTT--SSSSCC---CH
T ss_pred cccEEEECCEEEcCC---cceEEEECCEEEEecCCCC-CCCCcEEeCCCCEEEccCEEEeccccCcc--CccccC---ch
Confidence 457899999999865 7899999999999997543 23568999999 99999999999999875 222222 22
Q ss_pred HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc---ccceeeeeeeeee--cC---ChhhHHHHHHHHHH--cCCcEE
Q 009282 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK---NSCMDYGFHMAIT--KW---DEVVSDEMEVMVKE--KGINSF 200 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~--~g~~~i 200 (538)
.+.++++||||++|++...........+ ..+... ..++.+......+ .. .....++++++.++ .++.++
T Consensus 75 ~~~~~~~GvTtv~d~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 153 (379)
T 2ics_A 75 DEIGVKKGVTTVIDAGTTGAENIHEFYD-LAQQAKTNVFGLVNISKWGIVAQDELADLSKVQASLVKKAIQELPDFVVGI 153 (379)
T ss_dssp HHHTGGGTEEEEEEESSSCTTTHHHHHH-HHHTSSSEEEEEEESSTTTTSSSCTTSSGGGCCHHHHHHHHHHCTTTEEEE
T ss_pred hhhHhhCceeEEEcCCCCCccCHHHHHH-HHHhhcccEEEEccccccCCCCHHHHHHHHHHHHHHHHHHHHhhhCcceEE
Confidence 4678999999999986432222222233 222222 1112211111111 11 11224556666543 367778
Q ss_pred EEEeeeCCCccCCHHHHHHHHHHHHh-cCCeEEEEcCChh-hHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHH
Q 009282 201 KFFMAYKGSFMINDELLIEGFKRCKS-LGALAMVHAENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRL 278 (538)
Q Consensus 201 k~~~~~~~~~~~~~~~l~~~~~~A~~-~g~~v~~H~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~ 278 (538)
|.+..+......+.+.+++.++.|++ +|+++.+|+.... ...+..+.+ +.| ....|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~v~~H~~~~~~~~~~~~~~~-~~g--~~~~H~------------------ 212 (379)
T 2ics_A 154 KARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAPPHLDEILALM-EKG--DVLTHC------------------ 212 (379)
T ss_dssp EEEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSSCHHHHHHHC-CTT--CEEEST------------------
T ss_pred EEeccccccccchHHHHHHHHHHHHHhcCCeEEEeCCCCcchHHHHHHHh-hcC--Ceeeec------------------
Confidence 88776433334678889999999999 9999999996422 222222221 112 111111
Q ss_pred HHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc
Q 009282 279 AEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT 358 (538)
Q Consensus 279 ~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~ 358 (538)
..+.+.++.|.+.....+.+..+++.|+.+..++.. .. .....++.+++.
T Consensus 213 --~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~p~~--~~--------------------------~~~~~~~~~~~~ 262 (379)
T 2ics_A 213 --FNGKENGILDQATDKIKDFAWQAYNKGVVFDIGHGT--DS--------------------------FNFHVAETALRE 262 (379)
T ss_dssp --TCCSTTSSEETTTTEECHHHHHHHHTTCEEECCCTT--TS--------------------------CCHHHHHHHHHT
T ss_pred --cCCCccchhhccCHHHHHHHHHHHHcCCEEEecCCC--CC--------------------------cCHHHHHHHHHc
Confidence 001111223322221225677778888766544321 00 012457889999
Q ss_pred C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccc
Q 009282 359 G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAIL 437 (538)
Q Consensus 359 G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~ 437 (538)
| ++++++||+.+.+. + ..+ ...+...+..++.. ++|++++++++|.|||++||+++ +|+|+
T Consensus 263 G~~~~~l~TD~~~~~~---------~-~~~------~~~~~~~l~~~~~~-~ls~~~~~~~~T~n~A~~lgl~~-~G~l~ 324 (379)
T 2ics_A 263 GMKAASISTDIYIRNR---------E-NGP------VYDLATTMEKLRVV-GYDWPEIIEKVTKAPAENFHLTQ-KGTLE 324 (379)
T ss_dssp TCCCSBCCCCBCHHHH---------H-SSS------CCCHHHHHHHHHHH-TCCHHHHHHTTTHHHHHHTTCTT-SSSCC
T ss_pred CCCcceEeccCcccCC---------C-CCc------HhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCCC-CcCCC
Confidence 9 89999999752210 0 001 11334444344443 59999999999999999999965 99999
Q ss_pred cCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEee----EEEEEEECCEEEEECCee
Q 009282 438 VGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKG----KVEVTIAGGRVVWENDEL 494 (538)
Q Consensus 438 ~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~V~v~G~~V~~~~~~ 494 (538)
+||.|||||+|.+..+.. ++++.|..+.+ +|..||++|++||++|..
T Consensus 325 ~G~~ADlvv~d~~~~~~~----------~~~~~g~~~~~~~~~~v~~t~v~G~~v~~~~~~ 375 (379)
T 2ics_A 325 IGKDADLTIFTIQAEEKT----------LTDSNGLTRVAKEQIRPIKTIIGGQIYDNEGHH 375 (379)
T ss_dssp TTSBCCEEEEEEEEEEEE----------EECTTSCEEEEEEEEEEEEEEETTEEEEC----
T ss_pred CCCccCEEEEecccccce----------eecCCCCEEEeeeeeeeEEEEECCEEEecCCcc
Confidence 999999999997654322 45678877777 999999999999999864
|
| >1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-37 Score=313.53 Aligned_cols=354 Identities=18% Similarity=0.220 Sum_probs=218.2
Q ss_pred EEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-C-----------
Q 009282 55 ILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G----------- 120 (538)
Q Consensus 55 ~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~----------- 120 (538)
++|+|++|+++++ ..+++|+|+||||++||+.. ++.+ ||++|++|+|||||+|+|+..... +
T Consensus 1 ~li~n~~v~~~~~~~~~~~~v~I~~g~I~~vg~~~---~~~~-iD~~g~~v~PG~ID~H~H~~~~~~~~~~~~~~~~~~~ 76 (406)
T 1p1m_A 1 MIIGNCLILKDFSSEPFWGAVEIENGTIKRVLQGE---VKVD-LDLSGKLVMPALFNTHTHAPMTLLRGVAEDLSFEEWL 76 (406)
T ss_dssp CEEEEEEECCSTTSCCEEEEEEEETTEEEEEEESS---CCCS-EECTTEEEEECEEEEEECGGGGGGTTSSCSCCHHHHH
T ss_pred CEEEccEEEecCccccccceEEEECCEEEEeeCCC---Ccce-ecCCCcEEeecccchhhccchhhhccccCCCCHHHHH
Confidence 3799999999764 46899999999999999764 2456 999999999999999999976421 0
Q ss_pred ---------CCChhhHHHHH----HHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHH
Q 009282 121 ---------SETIDDFFSGQ----AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDE 187 (538)
Q Consensus 121 ---------~~~~~~~~~~~----~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (538)
..+++++.... ..++++||||++|+... ....++...+.+.+.....++. .......+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~----~~~~~~~~~~~g~r~~~~~~~~-~~~~~~~~~~~~ 151 (406)
T 1p1m_A 77 FSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFH----EEWIAKAVRDFGMRALLTRGLV-DSNGDDGGRLEE 151 (406)
T ss_dssp HTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEESS----HHHHHHHHHHHCCEEEEEEEEC-CBTTBCTTHHHH
T ss_pred HhhhccchhcCCHHHHHHHHHHHHHHHHhcCcEEEEechhC----HHHHHHHHHHcCCEEEEEcccc-cCCCCHHHHHHH
Confidence 02344444333 45679999999998632 2333444433333332222211 111112233444
Q ss_pred HHHHHHH-cCC-cEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHHHHHHcCCCCcccccccCC
Q 009282 188 MEVMVKE-KGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQKRMIELGITGPEGHALSRP 264 (538)
Q Consensus 188 ~~~~~~~-~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (538)
.....+. .+. ..++....++..+.++.+.++++++.|+++|+++++|+. .........+.+ ..|.
T Consensus 152 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~~~~~~~~-~~g~----------- 219 (406)
T 1p1m_A 152 NLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYETSKEEYDLEDIL-NIGL----------- 219 (406)
T ss_dssp HHHHHHHHTTGGGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCSTTCCCCTHHHH-TTTT-----------
T ss_pred HHHHHHHhhCCCCcEEEEEecCccCcCCHHHHHHHHHHHHHCCCcEEEEcCCCchHHHHHHHhh-hCCH-----------
Confidence 3333322 222 457776666666677899999999999999999999996 333222111100 0110
Q ss_pred chHHHHHHHHHHHHHHHcCCC-EEEEecc---CHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeec
Q 009282 265 PLLEGEATTRAIRLAEFVNTP-LYVVHVM---SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMS 340 (538)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~-~~~~h~~---~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (538)
...+.. ..+.|+. ..+. +.+++++ ..+|.. ++..+..
T Consensus 220 ---------------~~~g~~~~~~~H~~~~~~~~~-~~~~~~~------~~~p~~-------------~~~~~~~---- 260 (406)
T 1p1m_A 220 ---------------KEVKTIAAHCVHLPERYFGVL-KDIPFFV------SHNPAS-------------NLKLGNG---- 260 (406)
T ss_dssp ---------------TTSCEEEEECTTCCGGGTTTT-TTSSEEE------EECHHH-------------HHHTTCC----
T ss_pred ---------------hHcCcceeEeeeccCcccCCH-HHHHHHH------HhCcHH-------------HhhcCCC----
Confidence 001100 2455555 3332 2222211 222211 0111111
Q ss_pred CCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHh
Q 009282 341 PPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTS 420 (538)
Q Consensus 341 p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT 420 (538)
..+++.+++.|+++++|||+.+.+....+ +. +..+...+...+...++|++++++++|
T Consensus 261 --------~~~~~~~~~~Gv~~~lgtD~~~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~ls~~~al~~~T 318 (406)
T 1p1m_A 261 --------IAPVQRMIEHGMKVTLGTDGAASNNSLNL-----FF---------EMRLASLLQKAQNPRNLDVNTCLKMVT 318 (406)
T ss_dssp --------CCCHHHHHHTTCEEEECCCCTTTTSCCCH-----HH---------HHHHHHHHHHTTCTTSSCHHHHHHHHT
T ss_pred --------cCcHHHHHhCCCeEEEECCCCcCCCCCCH-----HH---------HHHHHHHHhcccCCCCCCHHHHHHHHH
Confidence 12378899999999999998765322111 11 233333333333356799999999999
Q ss_pred HhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccC
Q 009282 421 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVP 498 (538)
Q Consensus 421 ~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~ 498 (538)
.|||+++|++ + |+|++||.|||||+|.+.++.++.+++.. ...|... ..+|..||++|++|| +|+++..|
T Consensus 319 ~~~A~~lgl~-~-G~l~~G~~ADlvv~d~~~~~~~~~~~~~~---~~~~~~~--~~~v~~v~v~G~~v~-~g~~~~~d 388 (406)
T 1p1m_A 319 YDGAQAMGFK-S-GKIEEGWNADLVVIDLDLPEMFPVQNIKN---HLVHAFS--GEVFATMVAGKWIYF-DGEYPTID 388 (406)
T ss_dssp HHHHHHHTCS-C-SSCCTTSBCCEEEEECCSGGGCSGGGHHH---HHHHTCC--SCCSEEEETTEEEEE-TTBCTTSC
T ss_pred HHHHHHhCCC-C-cccCCCCcccEEEEeCCccccCCccChHH---HheEecC--CCCceEEEECCEEEE-CCeeCCCC
Confidence 9999999995 4 99999999999999999776554322111 0111111 357999999999999 99999887
|
| >2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate, product-bound, structural genomics, protein STRU initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=298.67 Aligned_cols=344 Identities=17% Similarity=0.165 Sum_probs=213.4
Q ss_pred cccEEEECcEEEcCCC-----c--eeeeEEEeCCEEEEecCCCCCCC----CceEEecCCCeeeccccccccccccccC-
Q 009282 52 SSKILIKGGTVVNAHH-----Q--QIADVYVEDGIVVAVQPNINVGD----DVKVLDATGKFVMPGGIDPHTHLAMEFM- 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~-----~--~~~~V~I~~grI~~Vg~~~~~~~----~~~vID~~G~~v~PGlID~H~H~~~~~~- 119 (538)
+.+++|+|++|+|+++ . .+++|+|+||||++||+..+.+. +.++||++|++|+|||||+|+|+.....
T Consensus 14 ~~~~li~n~~i~t~~~~~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~~~~~viD~~G~~v~PG~ID~H~H~~~~~~~ 93 (419)
T 2puz_A 14 NATALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITPALIDCHTHLVFGGNR 93 (419)
T ss_dssp -CEEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEEECEEECCCCCCCSSCC
T ss_pred CCcEEEECCeEeccCcccccCCcccceEEEEECCEEEEEcChhhhhhhccCCCeEEeCCCCEeCcCceecccCccchhhh
Confidence 4579999999999765 2 57899999999999998654332 2589999999999999999999865310
Q ss_pred ---------C---------------------CCChhhHHH----HHHHHHhCCcEEEecccCCCCC--CHHHHHHHHHHH
Q 009282 120 ---------G---------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING--SLTAGFEAYEKK 163 (538)
Q Consensus 120 ---------~---------------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~--~~~~~~~~~~~~ 163 (538)
+ ..+++.+.. ....++++|||++.++...... .....++...+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~ 173 (419)
T 2puz_A 94 AMEFEMRLNGATYEEIAKAGGGIVSSVRDTRALSDEVLVAQALPRLDTLLSEGVSTIEIKSGYGLDIETELKMLRVARRL 173 (419)
T ss_dssp HHHHHHHHTTCCHHHHHHTTCSHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTTEEEEEEECCSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHhcCCCeecchhhhccCCHHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCchhHHHHHHHHHHH
Confidence 0 012222222 2356788999999985322111 122334444443
Q ss_pred hcccceeeeee-ee---ee-cC---ChhhHHH-----HHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCe
Q 009282 164 AKNSCMDYGFH-MA---IT-KW---DEVVSDE-----MEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGAL 230 (538)
Q Consensus 164 ~~~~~~~~~~~-~~---~~-~~---~~~~~~~-----~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~ 230 (538)
.....+..... .. .. .. ..+.... +..+........++.+. +...++.+.++++++.|+++|++
T Consensus 174 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~g~~ 250 (419)
T 2puz_A 174 ETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAHAEGLADAVDGFC---EGIAFSVKEIDRVFAAAQQRGLP 250 (419)
T ss_dssp TTTSSCEEEEEECCTTCCCGGGTTCHHHHHHHTHHHHHHHHHHTTCCSEECCEE---STTSBCHHHHHHHHHHHHHTTCC
T ss_pred hhhcCceEEEEecccccCchhhcccHHHHHHHHHhhhhhhhhhccccccccccc---CCCCcCHHHHHHHHHHHHHCCCc
Confidence 32222221110 00 00 00 0111111 11111111234433322 22345789999999999999999
Q ss_pred EEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcE
Q 009282 231 AMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRV 310 (538)
Q Consensus 231 v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v 310 (538)
+.+|+...... ...+. +...+. ..+.|+...++ +.++++++.|+.+
T Consensus 251 v~~H~~~~~~~-~~~~~-------------------------------~~~~g~-~~~~H~~~~~~-~~~~~~~~~g~~~ 296 (419)
T 2puz_A 251 VKLHAEQLSNL-GGAEL-------------------------------AASYNA-LSADHLEYLDE-TGAKALAKAGTVA 296 (419)
T ss_dssp BEEEESSSSCC-SHHHH-------------------------------HHHTTC-SEEEECTTCCH-HHHHHHHHHTCEE
T ss_pred EEEEecccccC-CHHHH-------------------------------HHhcCC-ceehHhccCCH-HHHHHHHHcCCcE
Confidence 99999642110 01111 112232 24789988776 8889999999877
Q ss_pred EEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCC
Q 009282 311 IGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGV 390 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~ 390 (538)
+.+|...+. + . +.. .++ ++.++++|+++++|||+.+.+.. .
T Consensus 297 ~~~p~~~~~-l----------~-~~~---~~~---------~~~~~~~Gv~~~lgsD~~~~~~~--------~------- 337 (419)
T 2puz_A 297 VLLPGAFYA-L----------R-EKQ---LPP---------VQALRDAGAEIALATDCNPGTSP--------L------- 337 (419)
T ss_dssp EECHHHHHH-H----------T-CCC---CCC---------HHHHHHHTCCEEECCCCCSSSCC--------B-------
T ss_pred EECCchhhh-h----------c-ccc---ccc---------HHHHHHCCCeEEEECCCCCCCCc--------c-------
Confidence 766643111 0 0 000 112 68889999999999997643110 0
Q ss_pred cchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccC
Q 009282 391 NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE 470 (538)
Q Consensus 391 ~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~ 470 (538)
..+...++.++...++|+++||+++|.|||+++|+++++|+|++||.|||||||.|++..+. +.
T Consensus 338 ----~~l~~~~~~~~~~~~ls~~~al~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~~~~~~~~------------~~ 401 (419)
T 2puz_A 338 ----TSLLLTMNMGATLFRMTVEECLTATTRNAAKALGLLAETGTLEAGKSADFAIWDIERPAELV------------YR 401 (419)
T ss_dssp ----CCHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSSCCTTSBCCEEEECCSSTTHHH------------HC
T ss_pred ----ccHHHHHHHhccccCCCHHHHHHHHHHHHHHHcCCCCCccccCCCCcCCEEEECCCchhcch------------hh
Confidence 01222222334445699999999999999999999888999999999999999988664332 11
Q ss_pred CeEEeeEEEEEEECCEEEE
Q 009282 471 GRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 471 ~~~~~~~v~~V~v~G~~V~ 489 (538)
.. ..+|..||++|++|.
T Consensus 402 ~~--~~~v~~v~v~G~~v~ 418 (419)
T 2puz_A 402 IG--FNPLHARIFKGQKVS 418 (419)
T ss_dssp BS--CCCEEEEEETTEECC
T ss_pred hc--CCceEEEEECCEEcC
Confidence 00 247999999999875
|
| >2vun_A Enamidase; nicotinate degradation, binuclear metal center, amidohydrolases, stereospecificity, hydrolase; 1.89A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=291.55 Aligned_cols=351 Identities=17% Similarity=0.156 Sum_probs=221.1
Q ss_pred ccEEEECcEE-EcCCC----ceeeeEEEeCCEEEEecCCCCC-CCC-ceEEecCCCeeeccccccccccccccCCCCChh
Q 009282 53 SKILIKGGTV-VNAHH----QQIADVYVEDGIVVAVQPNINV-GDD-VKVLDATGKFVMPGGIDPHTHLAMEFMGSETID 125 (538)
Q Consensus 53 ~~~~i~n~~v-v~~~~----~~~~~V~I~~grI~~Vg~~~~~-~~~-~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~ 125 (538)
.+++|+|++| +++++ ..+++|+|+||||++|++.... +.+ .++||++|++|+|||||+|+|+... +.....
T Consensus 2 ~~~li~n~~v~~~~~~~~~~~~~~~v~I~~g~I~~Ig~~~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~~--~~~~~~ 79 (386)
T 2vun_A 2 SKTIIKNIGKIVSGDIKSPVLQADTIVVEDGLIAAIGGEELMKDAGDATIIDAAGSTVTPGLLDTHVHVSGG--DYAPRQ 79 (386)
T ss_dssp CEEEEESCSEEECSCTTSCEECCSEEEEETTEEEEEESGGGGTTCTTCEEEECTTCEEEECEEEEEECCCST--TEEGGG
T ss_pred ccEEEeccEEEEcCCCCccccccceEEEECCEEEEecCccccCCCCCceEEcCCCCEEccceeeccccccCC--CcChhH
Confidence 4689999999 99874 2578999999999999973221 234 6899999999999999999999743 111000
Q ss_pred hHHHHHHHHHhCCcEEEecccC---CCCC-CH--H---HHHHHHHHHhcccceeeeeeeeee-cCChhhHHHHHHHHHHc
Q 009282 126 DFFSGQAAALAGGTTMHIDFVI---PING-SL--T---AGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVSDEMEVMVKEK 195 (538)
Q Consensus 126 ~~~~~~~~~l~~GvTt~~d~~~---~~~~-~~--~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 195 (538)
......+.++++||||++|+.. +... .. . ..+......+.+. ....+..+.. .......++++++. +.
T Consensus 80 ~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~-~~ 157 (386)
T 2vun_A 80 KTMDFISSALHGGVTTMISAGSPHFPGRPKDAAGTKALAITLSKSYYNARP-AGVKVHGGAVILEKGLTEEDFIEMK-KE 157 (386)
T ss_dssp TEESHHHHHHTTTEEEEEECCCTTSTTCCCSHHHHHHHHHHHHHHHHHCCG-GGCEEECCEECCCTTCCHHHHHHHH-HT
T ss_pred HHHHHHHHHHhCCceEEEeccccccCCChhhHHHHHHHHHHhhcccccccc-cceeeccCcccccCCcCHHHHHHHH-Hh
Confidence 1112578899999999999762 1111 12 1 1111111111110 0011111110 11111235666666 66
Q ss_pred CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
|...+|++... ...+.+.++++++.|+++|+++.+|+.+..... .+. +.+..+
T Consensus 158 g~~~ik~~~~~---~~~~~~~l~~~~~~a~~~g~~v~~H~~~~~~~~--------~~~----------------~~i~~~ 210 (386)
T 2vun_A 158 GVWIVGEVGLG---TIKNPEDAAPMVEWAHKHGFKVQMHTGGTSIPG--------SST----------------VTADDV 210 (386)
T ss_dssp TCCEEEEETSS---SCCSHHHHHHHHHHHHHTTCEEEEECSCCSCST--------TCS----------------CCHHHH
T ss_pred CCCeEEEeecC---CCCCHHHHHHHHHHHHHCCCeEEEecCCccccc--------cCH----------------HHHHHH
Confidence 88899987432 235789999999999999999999996321000 000 111122
Q ss_pred HHHHHHcCCCEEEEeccC----HHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHH
Q 009282 276 IRLAEFVNTPLYVVHVMS----MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~~----~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (538)
+ +.|.+ .+.|+.. ... +.++++++.|+.+...+. . . + .......
T Consensus 211 ~----~~G~~-~i~H~~~~~~~~~~-~~~~~~~~~g~~vl~~~~-~-----g------~--------------~~~~~~~ 258 (386)
T 2vun_A 211 I----KTKPD-VVSHINGGPTAISV-QEVDRIMDETDFAMEIVQ-C-----G------N--------------PKIADYV 258 (386)
T ss_dssp H----HHCCS-EEETTTCSSSCCCH-HHHHHHHHHCCCEEEEES-S-----S------C--------------HHHHHHH
T ss_pred H----HcCCC-EEEEccCCCCCCCH-HHHHHHHHcCCeEEEecc-C-----C------c--------------ccccHHH
Confidence 2 23444 4889876 444 788889999987721111 0 0 0 1122356
Q ss_pred HHHHHhcCC--ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 352 LQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 352 l~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
++.++++|+ +++++||++ ... ...+.| .+...++.+.. .++|++++++++|.|||++||+
T Consensus 259 ~~~~~~~g~~d~v~lgTD~p-~~~----------~~~~~g------~~~~~~~~~~~-~~ls~~~~~~~~T~n~A~~lgl 320 (386)
T 2vun_A 259 ARRAAEKGQLGRVIFGNDAP-SGT----------GLIPLG------ILRNMCQIASM-SDIDPEVAVCMATGNSTAVYGL 320 (386)
T ss_dssp HHHHHHHTCGGGEEEECCBS-BTT----------BBCTTH------HHHHHHHHHHH-SCCCHHHHHHHHTHHHHHHHTC
T ss_pred HHHHHHcCCCceeEEecCCC-CCC----------CCCcch------hHHHHHHHHhh-cCCCHHHHHHHHhHHHHHHcCC
Confidence 889999999 999999973 110 001111 12222323333 5699999999999999999999
Q ss_pred CCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeE--EeeEEEEEEECCEEEEECCeeec
Q 009282 430 YPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRR--VKGKVEVTIAGGRVVWENDELNV 496 (538)
Q Consensus 430 ~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~V~v~G~~V~~~~~~~~ 496 (538)
++|+|++||.|||||+|.++. .... .++.... ...+|..||++|++|+++++...
T Consensus 321 --~~G~i~~G~~ADlvv~d~~~~-~~~~---------~~~~~~~~~~~~~v~~v~v~G~~v~~~~~~~~ 377 (386)
T 2vun_A 321 --NTGVIAPGKEADLIIMDTPLG-SVAE---------DAMGAIAAGDIPGISVVLIDGEAVVTKSRNTP 377 (386)
T ss_dssp --SCSSCSTTSBCCEEEEECBTT-CSCS---------SHHHHHHHTCCCEEEEEEETTEEEESSCSSSC
T ss_pred --CceeeCCCCeeCEEEECCCcc-cccc---------hhHHHhhccCCCceeEEEECCEEEeecCcCCC
Confidence 589999999999999998863 1111 1122110 02489999999999999987666
|
| >1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB: 1e9z_B* 3qga_C* 3qgk_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-36 Score=313.11 Aligned_cols=362 Identities=16% Similarity=0.205 Sum_probs=232.2
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCC------------CCCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN------------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~------------~~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
+++++|+|++|+++.+..+++|+|+||||++||+... .++++++||++|++|+|||||+|+|+..+
T Consensus 65 ~~dllI~n~~Vid~~gi~~~dI~I~dGrI~~IG~~~~~~~~~~~~~~~~~~~~~evIDa~G~iV~PGlID~HvHl~~p-- 142 (569)
T 1e9y_B 65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGGIDTHIHFISP-- 142 (569)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECEEEEEEETTCT--
T ss_pred cCCEEEEeeEEECCCCcEeeeEEEECCEEEEeecCCCccccccccccccCCCCCeEEECCCCEEecCEEEEeecCCCc--
Confidence 5689999999999776678999999999999997532 13457899999999999999999998654
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCCCC------C--CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHH
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPIN------G--SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
+ ....++++||||+++++.... . .....++...+......+++++..... ....+++.++
T Consensus 143 ~---------~~~~al~~GvTTv~d~g~~p~~~t~~~~~~~g~~~l~~~~~a~~~~~~~~~~~g~g~---~~~~~~l~e~ 210 (569)
T 1e9y_B 143 Q---------QIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGN---ASNDASLADQ 210 (569)
T ss_dssp T---------HHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECC---CSCHHHHHHH
T ss_pred H---------HHHHHHhCCeeEEEcCCcCCCCCCcCcccCCcHHHHHHHHHHhcccCceEEEECCCC---cCCHHHHHHH
Confidence 1 157889999999999854221 0 123445555555555556665543221 1234566666
Q ss_pred HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
. +.|+.++|++..+ ..+.+.++++++.|+++|+++.+|+++..+. +.
T Consensus 211 ~-~~Ga~gik~~~~~----~~t~e~l~~~l~~A~~~g~~V~iHa~~~~e~----------g~------------------ 257 (569)
T 1e9y_B 211 I-EAGAIGFKIHEDW----GTTPSAINHALDVADKYDVQVAIHTDTLNEA----------GC------------------ 257 (569)
T ss_dssp H-HTTCSEEEECGGG----CCCHHHHHHHHHHHHHTTCEEEECCCTTCSS----------CC------------------
T ss_pred H-HcCCCEEEecCCC----CCCHHHHHHHHHHHHHhCCEEEEEcCCcccc----------hH------------------
Confidence 6 5788999886543 4689999999999999999999999753210 00
Q ss_pred HHHHHHHHHHcCCCEEEEeccCHHH---HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccc-cceeecCCC----
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMSMDA---MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA-AKYVMSPPI---- 343 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~~~~---~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~---- 343 (538)
+.+. ++...+.++|+.|++.... .+.++++++.|+.. ...++++.+..+...+ .+... ......+++
T Consensus 258 ~~~~--la~~~g~~~hi~H~~~~~~~~~~d~I~~~~~~gv~~--~~~~ptl~~t~~~~~~-~~d~~~v~h~l~~~~~ed~ 332 (569)
T 1e9y_B 258 VEDT--MAAIAGRTMHTFHTEGAGGGHAPDIIKVAGEHNILP--ASTNPTIPFTVNTEAE-HMDMLMVCHHKDKSIKEDV 332 (569)
T ss_dssp HHHH--HHHHTTCCEEETTTTSTTSCSTTTGGGGGGSTTEEE--EECGGGCSCBTTHHHH-HHHHHHHTTTCCSSCHHHH
T ss_pred HHHH--HHHHcCCCEEEEEcccCcccccHHHHHHHHHcCCee--EeeCCccccccchhhh-hhchhhhhhhcCcccHHHH
Confidence 0011 1234678899999987541 36788888888522 2222222221111100 00000 000011111
Q ss_pred -----CCcccHHHHHHHHh-cCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHh----hhcCCCCHH
Q 009282 344 -----RASGHNKALQAALA-TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM----VESGQISVT 413 (538)
Q Consensus 344 -----r~~~~~~~l~~~l~-~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~----~~~~~ls~~ 413 (538)
+.......+++.+. .|+++++|||+.+.+...... .++|. ....+......+ ....+++++
T Consensus 333 ~~~~~rlr~~~~a~~~~L~d~Gv~v~iGSD~~~~~~~g~~~-~~~~~--------~~~~~~~~~G~l~~~~~~~~~ls~~ 403 (569)
T 1e9y_B 333 QFADSRIRPQTIAAEDTLHDMGAFSITSSDSQAMGRVGEVI-TRTWQ--------TADKNKKEFGRLKEEKGDNDNFRIK 403 (569)
T ss_dssp HHHHHHCCHHHHHHHHHHHHTTSCCEECCCTTSSCCTTSHH-HHHHH--------HHHHHHHHHCSCSSCCSSSCHHHHH
T ss_pred HHhhcchhhhHHHHHHHHHhCCCEEEEeCCCCccCcccccc-cchhh--------HHHHhHhhccCcchhhccccCCCHH
Confidence 11123455555555 799999999988764310000 00000 000000000000 124568999
Q ss_pred HHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC-C
Q 009282 414 DYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN-D 492 (538)
Q Consensus 414 eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~-~ 492 (538)
++|+++|.|||+++|+++++|+|++||.|||||||++++ ..++..||++|++||++ |
T Consensus 404 ~al~~~T~npA~~lGl~~~~GsIe~Gk~ADlvv~d~~~~----------------------~~~v~~v~~~G~iv~~~~g 461 (569)
T 1e9y_B 404 RYLSKYTINPAIAHGISEYVGSVEVGKVADLVLWSPAFF----------------------GVKPNMIIKGGFIALSQMG 461 (569)
T ss_dssp HHHGGGTHHHHHHTTCTTTSSSSCTTSBCCEEEECTTTT----------------------TTCCSEEEETTEEEEEEEC
T ss_pred HHHHHHhHHHHHHcCCCCCccCcCCCCCCCEEEECchhc----------------------CCCccEEEECCEEEEcCCC
Confidence 999999999999999988899999999999999998753 24688999999999986 6
Q ss_pred eeec
Q 009282 493 ELNV 496 (538)
Q Consensus 493 ~~~~ 496 (538)
+...
T Consensus 462 ~~~~ 465 (569)
T 1e9y_B 462 DANA 465 (569)
T ss_dssp CTTS
T ss_pred Cccc
Confidence 5433
|
| >3v7p_A Amidohydrolase family protein; iron binding site, enzyme functio initiative, EFI; HET: TLA; 1.35A {Nitratiruptor SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-36 Score=307.86 Aligned_cols=371 Identities=16% Similarity=0.083 Sum_probs=231.2
Q ss_pred EEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCeeeccccccccccccccCC----CC----
Q 009282 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFMG----SE---- 122 (538)
Q Consensus 55 ~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~~~~----~~---- 122 (538)
++|+|++|+++++. ++++|+| ||||++||+..+. .++.++||++|++|+|||||+|+|+..+... ..
T Consensus 2 ~~i~~~~v~~~~~~~~~~~v~i-~g~I~~Vg~~~~~~~~~~~~~vid~~g~~v~PGlId~H~H~~~~~~rg~~~~~~l~~ 80 (427)
T 3v7p_A 2 RIIKPFAILTPQTIIQDKAVAF-DKKIEAIDTVENLIKKYPNAAVEHDENSLLLPGFANPHLHLEFSANKATLQYGDFIP 80 (427)
T ss_dssp EEEEEEEEECSSSEEESCEEEE-SSBEEEEECHHHHHHHCTTSEEEEEEEEEEEECEEEEEECGGGTTCSSCSCCSSHHH
T ss_pred EEEECCEEEcCCCEEeCcEEEE-CCEEEEecChhhhccccCCceEEeCCCCEEecCEeecccCcchhhcccccccCCHHH
Confidence 58999999998874 5899999 9999999985432 2357899999999999999999999765211 00
Q ss_pred ------------ChhhH----HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHH
Q 009282 123 ------------TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (538)
Q Consensus 123 ------------~~~~~----~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (538)
++++. ......++++||||+.|+...... ++...+.+.+................+..+
T Consensus 81 wl~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~-----~~a~~~~Gir~~~~~~~~~~~~~~~~~~~~ 155 (427)
T 3v7p_A 81 WLYSVIRHREDLLPLCDGACLEQTLSSIIQTGTTAIGAISSYGED-----LQACIDSALKVVYFNEVIGSNAATADVMYA 155 (427)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHTTEEEEEEEESSSTT-----HHHHHHBSSEEEEEEEECBCCGGGHHHHHH
T ss_pred HHHHHHHhHHhcCHHHHHHHHHHHHHHHHHhCCEEEEEecCcHHH-----HHHHHhcCCeEEEeccccCCChhhhhHHHH
Confidence 11111 122345788999999998654221 344444443332222211110101111122
Q ss_pred HHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC-ChhhHHHHHH-------HHHHcCCCC
Q 009282 187 EMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE-NGDAVFEGQK-------RMIELGITG 255 (538)
Q Consensus 187 ~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~-~~~~~~~~~~-------~~~~~g~~~ 255 (538)
+..+... ......++..+.++..+.++++.++++++.|+++|+++++|+. +..+.....+ .+...+...
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~s~e~l~~~~~~A~~~g~~v~~H~~E~~~e~~~~~~~~g~~~~~~~~~~~~~ 235 (427)
T 3v7p_A 156 SFLERFHQSKKHENERFKAAVAIHSPYSVHYILAKRALDIAKKYGSLVSVHFMESRAEREWLDKGSGEFAKFFKEFLNQT 235 (427)
T ss_dssp HHHHHHHHHHTTCBTTEEEEEEECCTTTBCHHHHHHHHHHHHHHTCCEEEEESCSHHHHHHHHHSCSHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhhccCCceEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHhcCcchhhhhhhccCC
Confidence 2222221 1234567777788888888999999999999999999999984 4443332221 111222210
Q ss_pred cccccccCCchHHHHHHHHHHHHHHH-cCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccc
Q 009282 256 PEGHALSRPPLLEGEATTRAIRLAEF-VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTA 334 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~ 334 (538)
+|.. ...+.... .+.++.+.|+...++ +.++++++.|+.++.||... +..+
T Consensus 236 -------~~~~-------~~~~~l~~~~~~~~~~~H~~~~~~-~~~~~l~~~g~~~~~~p~s~-------------~~~~ 287 (427)
T 3v7p_A 236 -------RPVN-------DTKSFLELFKELHTLFVHMVWANE-EEIQTIASYNAHIIHCPISN-------------RLLG 287 (427)
T ss_dssp -------SCSS-------CHHHHHHTTTTSEEEEEECTTCCH-HHHHHHHHSEEEEEECHHHH-------------HHTT
T ss_pred -------Cccc-------CHHHHHhhhcCCCEEEEECCCCCH-HHHHHHHHcCCEEEECHHHH-------------HHhc
Confidence 1111 11121222 577889999998887 88999999999888887652 1121
Q ss_pred cceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHH
Q 009282 335 AKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTD 414 (538)
Q Consensus 335 ~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~e 414 (538)
.+. +| ++.+ +|+++++|||+...+....+ +. ++........ ....++++++
T Consensus 288 ~~~---~~---------~~~~--~Gv~v~lgtD~~~~~~~~~~-----~~---------~~~~a~~~~~-~~~~~~~~~~ 338 (427)
T 3v7p_A 288 NGV---LD---------LEKI--KSIPYAIATDGLSSNYSLNM-----YE---------ELKAALFVHP-NKEATTFAKE 338 (427)
T ss_dssp CCC---CC---------TTTT--TTSCEEECCCCTTSCSCCCH-----HH---------HHHHHHHHST-TSCHHHHHHH
T ss_pred CCC---CC---------HHHH--CCCeEEEeCCCCCCCCCCCH-----HH---------HHHHHHHhcc-CCCcccCHHH
Confidence 211 12 2333 89999999996544322111 11 1222211111 1111256799
Q ss_pred HHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCee
Q 009282 415 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 494 (538)
Q Consensus 415 al~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~ 494 (538)
+|+++|.|||+++|++ .|+|++||.|||||+|.+.++..+..+ |+.......+|..||++|++||++|++
T Consensus 339 ~~~~~t~~~a~~~g~~--~g~l~~G~~Ad~~~~d~~~~~~~~~~~--------~~~~~~~~~~v~~v~v~G~~v~~~g~~ 408 (427)
T 3v7p_A 339 LIIRATKAGYDALGFE--GGEIAVGKDADMQLIDLPEGLTNVEDL--------YLHVILHTTKPKKVYIQGEEHVREAEN 408 (427)
T ss_dssp HHHHHTHHHHHHHTCS--CSSCCTTSBCCEEEEECCTTCCCGGGH--------HHHHHHHCSSCSEEEETTEEEEC---C
T ss_pred HHHHHHHHHHHHhCCC--CceeCCCCccCEEEEcCCCccCCCccc--------hHHHhcccCCccEEEECCEEEEECCcc
Confidence 9999999999999994 899999999999999998776554321 111111135799999999999999999
Q ss_pred eccC
Q 009282 495 NVVP 498 (538)
Q Consensus 495 ~~~~ 498 (538)
+...
T Consensus 409 ~~~~ 412 (427)
T 3v7p_A 409 LYFQ 412 (427)
T ss_dssp CCBC
T ss_pred cCCc
Confidence 8764
|
| >3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu genomics, center for structural genomics of infectious DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=285.05 Aligned_cols=323 Identities=14% Similarity=0.144 Sum_probs=247.1
Q ss_pred CCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccc-eeeeeee
Q 009282 99 TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC-MDYGFHM 175 (538)
Q Consensus 99 ~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~-~~~~~~~ 175 (538)
.|++|+||+||+|+|+..+ .......+++++||||+++|....+. ...+.++.+.+... ... +++++++
T Consensus 22 ~~~~vlPG~ID~HvHlreG--------~~~~e~~aA~aGG~Ttvi~mPnt~P~~~~~~~~~~~~~~a~~~~~~vd~~~~~ 93 (359)
T 3pnu_A 22 SNAMKLKNPLDMHLHLRDN--------QMLELIAPLSARDFCAAVIMPNLIPPLCNLEDLKAYKMRILKACKDENFTPLM 93 (359)
T ss_dssp SCCEEEESCEEEEECCCSH--------HHHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHHTTSCCEEEE
T ss_pred CCcEEccCcEEccccCCCC--------CcchhHHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHHhccCCCceEEEee
Confidence 5899999999999999652 12233458889999999999754443 45565665555443 244 7888877
Q ss_pred e--eecCChhhHHHHHHHHHHcCCcEEEEEeeeC------CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009282 176 A--ITKWDEVVSDEMEVMVKEKGINSFKFFMAYK------GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (538)
Q Consensus 176 ~--~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~------~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~ 247 (538)
. .+..+ .+++.++. +. +.++|+|..+. +....+.+.++++++.+++.|.++.+|+++...+.
T Consensus 94 ~l~lt~~~---~~el~~l~-~~-v~~~Kl~~aga~~~s~~~~~~~~~~~l~~~l~~~~~~g~~v~vHaEd~~~i~----- 163 (359)
T 3pnu_A 94 TLFFKNYD---EKFLYSAK-DE-IFGIKLYPAGITTNSNGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVM----- 163 (359)
T ss_dssp EEECSCCC---HHHHHHHT-TT-CSEEEECBTTSSSSCTTSBCCCCHHHHHHHHHHHHHTTCCEEECCCCSSCGG-----
T ss_pred eeEecCCC---HHHHHHHH-Hh-hhehhheeCCCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEecCCchHhH-----
Confidence 6 55333 45566665 34 77899988641 22334889999999999999999999998765311
Q ss_pred HHHcCCCCcccccccCCchHHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccc
Q 009282 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV-NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (538)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~ 326 (538)
..|...+.+++.++++. +.++|+.|+++...++.++.. .+|++++++|||.++++++
T Consensus 164 ------------------~~E~~ai~r~~~la~~~~g~~lhi~HvSt~~~v~~I~~A----~~VtaEv~phhL~lt~~~~ 221 (359)
T 3pnu_A 164 ------------------DRESNFAKIYEKLAKHFPRLKIVMEHITTKTLCELLKDY----ENLYATITLHHLIITLDDV 221 (359)
T ss_dssp ------------------GTTGGGHHHHHHHHHHCTTSCEEECSCCSHHHHHHHHHC----TTEEEEECSGGGTCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHHcCCCcEEEEecCcHHHHHHHHhc----CCceEEEechhhEEcHHHh
Confidence 12345577888888865 999999999998776666544 7899999999999999887
Q ss_pred cCCCcccccceeecCCCCCcccHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh
Q 009282 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405 (538)
Q Consensus 327 ~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~ 405 (538)
.... .+..++++||+|...+++++|++++.|... +++|||+|++..+|.. ++ .+.|+.+++..+++.+. .+
T Consensus 222 ~~~~--~~~~~k~~PPLR~~~dr~aL~~al~dG~id~~iaTDHaPh~~~eK~~---~~--g~~Gi~~~~~~L~l~~~-~~ 293 (359)
T 3pnu_A 222 IGGK--MNPHLFCKPIAKRYEDKEALCELAFSGYEKVMFGSDSAPHPKDTKEC---CG--CAAGVFSAPVILPVLAE-LF 293 (359)
T ss_dssp HTSS--CCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCBC---------C--CCSCBCCGGGHHHHHHH-HH
T ss_pred cCcC--CCCceEEcCCCCCHHHHHHHHHHHhcCCCCEEEecCCCCCCHHHhCC---CC--CCCChhhHHHHHHHHHH-HH
Confidence 5322 247899999999999999999999999999 7999999999888753 33 46678777777777774 44
Q ss_pred hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCcc-CCeEEeeEEE
Q 009282 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVY-EGRRVKGKVE 479 (538)
Q Consensus 406 ~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 479 (538)
.. +++++++++..|.|||+++|+..+. | |||+||| ..|.++.+.+.++..|+|| +|..+.++|.
T Consensus 294 ~~-~~~l~~lv~~~s~nPAki~gL~~~~-----G--Adlvl~d--~~~~v~~~~~~s~~~~tPf~~G~~l~G~v~ 358 (359)
T 3pnu_A 294 KQ-NSSEENLQKFLSDNTCKIYDLKFKE-----D--KILTLEE--KEWQVPNVYEDKYNQVVPYMAGEILKFQLK 358 (359)
T ss_dssp HH-HSCHHHHHHHHTHHHHHHHTCCCSS-----C--CEEEEEC--CCEECCSCEECSSCEECCTTTTCEESCEEC
T ss_pred hh-cCCHHHHHHHHHHhHHHHhCCCCCC-----C--CeEEEEe--cCEEeCchhcccCCCccccCCCCEEEEEEe
Confidence 33 3699999999999999999995433 4 9999999 7899999999999999999 9998777764
|
| >4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=300.46 Aligned_cols=366 Identities=14% Similarity=0.034 Sum_probs=233.3
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccC-C----------
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM-G---------- 120 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~-~---------- 120 (538)
|++++++|+.+.+ ...++++|+|+||||++||+..+ .++||++|++|+|||||+|+|+..... |
T Consensus 11 m~~l~~~~~~~~~-~~~~~~~v~I~~g~I~~Ig~~~~----~~~iD~~g~~v~PGlID~H~H~~~~~~rg~~~~~~~~~~ 85 (458)
T 4f0l_A 11 QHFIHARQALLPD-GWAENVRIGIAGGVICSIETGVL----AGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRGPSAD 85 (458)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEETTEEEEEECSCC----CCTTCEEEEEEEECEEEEEECGGGGGGTTSSCBCCSCSS
T ss_pred hhHhhhcceeccC-ccccCceEEEECCEEEEEeCCCc----cccccCCCCEEccCceecccchhhhhhcccccccccCCC
Confidence 3457788877632 22468999999999999998653 346999999999999999999964411 0
Q ss_pred --------------CCChhhHHHH----HHHHHhCCcEEEecccCCCC-------CC----HHHHHHHHHHHhcccceee
Q 009282 121 --------------SETIDDFFSG----QAAALAGGTTMHIDFVIPIN-------GS----LTAGFEAYEKKAKNSCMDY 171 (538)
Q Consensus 121 --------------~~~~~~~~~~----~~~~l~~GvTt~~d~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~ 171 (538)
..++++++.. ...++++||||+.|+..... .. ....++...+.+.+..+..
T Consensus 86 ~~~~w~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~g~r~~~~~ 165 (458)
T 4f0l_A 86 SFWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLP 165 (458)
T ss_dssp TTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEE
T ss_pred cHHHHHHHhhhhhhhCCHHHHHHHHHHHHHHHHhcCCcEEEeeeeeccccccccccchhhhHHHHHHHHHHcCCeEEEec
Confidence 0123333332 33467899999999743110 01 2344555555554433322
Q ss_pred eeeee-----ee---------cCChhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC
Q 009282 172 GFHMA-----IT---------KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (538)
Q Consensus 172 ~~~~~-----~~---------~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 236 (538)
.+... .. ...++..+.++.+.+. .+...+.+.+.++..+..+.+.++++++.|+ |+++++|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~--g~~v~~H~~ 243 (458)
T 4f0l_A 166 VFYAHSGFGGAAANEGQRRFINDPERFARLIEGCRKTLEGFEGAVLGVAPHSLRAVTPDELDSVTQLLP--DAPVHIHVA 243 (458)
T ss_dssp EECCEEETTTEECCGGGTTTCCCHHHHHHHHHHHHHHHTTCTTCEECBEECBTTTSCHHHHHHHTTSST--TSCEEEEES
T ss_pred chhccccccccCCchhhhhhhcCHHHHHHHHHHHHHHhccCCceEEEEecCCcCcCCHHHHHHHHHHhc--CCCEEEEeC
Confidence 21110 00 1112223333333321 2334455556667777889999999999888 999999995
Q ss_pred -ChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecc
Q 009282 237 -NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPV 315 (538)
Q Consensus 237 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~ 315 (538)
+..+.....+. +|.. .+.. +......+.++.+.|+...++ +.++++++.|+.++.||.
T Consensus 244 e~~~~~~~~~~~---~g~~----------------~~~~-l~~~g~l~~~~~~~H~~~~~~-~~~~~l~~~g~~~~~~p~ 302 (458)
T 4f0l_A 244 EQVKEVEDCIAW---SGKR----------------PVEW-LLDHQDVTARWCLIHATHMSD-EETKHMAKAGAIAGLCPV 302 (458)
T ss_dssp CSHHHHHHHHHH---HSSC----------------HHHH-HHHHSCCCTTEEEEECCSCCH-HHHHHHHHHTCEEEECHH
T ss_pred CCHHHHHHHHHH---hCCC----------------HHHH-HHHcCCCCCCeEEEEeccCCH-HHHHHHHHcCCeEEECcc
Confidence 44444433322 2321 1111 122233567889999998876 889999999999998887
Q ss_pred ccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhh
Q 009282 316 VSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEE 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~ 395 (538)
+. +..+.+. .+++.++++|+++++|||..+..+ ++. +.
T Consensus 303 s~-------------~~l~~~~------------~~~~~~~~~Gv~v~lgtD~~~~~~--------~~~---------~~ 340 (458)
T 4f0l_A 303 TE-------------ANLGDGT------------FNATEFAAAGGKFGIGSDSNVLIG--------IGD---------EL 340 (458)
T ss_dssp HH-------------HHTTCCC------------CCHHHHHHTTCEEEECCBTTSSCC--------HHH---------HH
T ss_pred cc-------------ccccCCC------------ccHHHHHHCCCeEEEECCCCCCCC--------HHH---------HH
Confidence 52 1121211 127889999999999999532211 111 22
Q ss_pred hHHHHHHHhhh--------cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCC
Q 009282 396 RMHLVWDTMVE--------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTN 467 (538)
Q Consensus 396 ~~~~~~~~~~~--------~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~ 467 (538)
.......+... ..+++++++|+++|.|||+++|+ ++|+|++||.|||||+|.+.++..+..++ ....
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~T~~~A~~lg~--~~G~l~~G~~ADlvv~d~~~~~~~~~~~~---~~~~ 415 (458)
T 4f0l_A 341 RQLEYSQRLYHRARNVLAANEGSTGRALFDGAVLGGNIAMGR--PEDGLKKGASADFVSLDVERLPHAKGDVV---LDGW 415 (458)
T ss_dssp HHHHHHHHHHHTCSSCSCSTTSBHHHHHHHHHHHHHHHHTTC--TTCSSSTTSBCCEEEEECTTSTTCCHHHH---HHHH
T ss_pred HHHHHHHhhhccCccccCCcccCCHHHHHHHHHHHHHHHhCC--CCCcCCCCCcCCEEEEeCCCCccCCcccH---HHhC
Confidence 22222222221 23599999999999999999999 48999999999999999987755432211 1122
Q ss_pred ccCCeEEeeEEEEEEECCEEEEECCeee
Q 009282 468 VYEGRRVKGKVEVTIAGGRVVWENDELN 495 (538)
Q Consensus 468 ~~~~~~~~~~v~~V~v~G~~V~~~~~~~ 495 (538)
+|.+. . +|..||++|++||++|+++
T Consensus 416 ~~~~~--~-~v~~v~v~G~~v~~~g~~~ 440 (458)
T 4f0l_A 416 IFAGR--A-HVCDVWVRGVKQVEGGRHR 440 (458)
T ss_dssp HHTSC--C-EEEEEEETTEEEEETTEET
T ss_pred eEcCC--C-CceEEEECCEEEEECCEeC
Confidence 34443 3 8999999999999999984
|
| >3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=285.62 Aligned_cols=339 Identities=23% Similarity=0.208 Sum_probs=212.4
Q ss_pred cccEEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCC---------
Q 009282 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS--------- 121 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~--------- 121 (538)
+++++|+|++|+++++. ..++|+|+||+|++|++... +.+.++||++|++|+|||||+|+|++....+.
T Consensus 4 ~~~~~i~~~~i~~~~~~~~~~~v~i~~g~I~~i~~~~~-~~~~~~id~~g~~~~Pg~~d~h~h~~~~~~~~~~~~~~~~~ 82 (396)
T 3ooq_A 4 SVKILFKNATVFPITSRPFKGDVLVSNGKVEKVGENIE-DPDAEIVDLTGKFLFPGFVDAHSHIGLFEEGVGYYYSDGNE 82 (396)
T ss_dssp --CEEEEEEEECCSSSCCEEEEEEEETTEEEEEESCCC-CTTSEEEECTTCEEEECEEEEEECTTTSCTTSCGGGCCSCC
T ss_pred cceEEEECcEEEeCCCCeEEeEEEEECCEEEEecCCCC-CCCCeEEECCCCEEecCEEecccccCccccCcccccccccc
Confidence 45789999999998753 44999999999999998766 66789999999999999999999998642111
Q ss_pred --------CChhhH----HHHHHHHHhCCcEEEecccCCCCC---------CHHHHHHHHHHHhcccceeeeeeeeee--
Q 009282 122 --------ETIDDF----FSGQAAALAGGTTMHIDFVIPING---------SLTAGFEAYEKKAKNSCMDYGFHMAIT-- 178 (538)
Q Consensus 122 --------~~~~~~----~~~~~~~l~~GvTt~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 178 (538)
.+..+. ......++++||||++++....+. ......+ ..... ...++.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GvTtv~~~~gs~~~i~G~~~~~~~~~~~~~---~~~~~--~~~~i~~~~g~~ 157 (396)
T 3ooq_A 83 ATDPVTPHVKALDGFNPQDPAIERALAGGVTSVMIVPGSANPVGGQGSVIKFRSIIVE---ECIVK--DPAGLKMAFGEN 157 (396)
T ss_dssp TTCSBCTTCBGGGGCCTTCHHHHHHHTTTEEEEEECCCSSSSEEEEEEEEESCCSSHH---HHEEE--EEEEEEEECSHH
T ss_pred ccCccCccccHhhhcCcCcHHHHHHHhCCeEEEeccCCCCCcccCeeEEEeccCCCHH---Hceec--CCcEEEEEcCCC
Confidence 111111 135778899999999998543211 0000011 11100 0011111100
Q ss_pred -----------cCCh-hhHHHHHHHHHHcCCcEEE---EEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHH
Q 009282 179 -----------KWDE-VVSDEMEVMVKEKGINSFK---FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFE 243 (538)
Q Consensus 179 -----------~~~~-~~~~~~~~~~~~~g~~~ik---~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~ 243 (538)
.... .....+++.... +....+ ......+. ....+...+.+..+.+.++++.+|+.....+
T Consensus 158 ~~~~~~~~~~~p~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~g~-~~~~~~~~e~l~~~~~~~~~v~iHa~~~~~i-- 233 (396)
T 3ooq_A 158 PKRVYGERKQTPSTRMGTAGVIRDYFTK-VKNYMKKKELAQKEGKE-FTETDLKMEVGEMVLRKKIPARMHAHRADDI-- 233 (396)
T ss_dssp HHHHHHHTTCSCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCC-CCCCCHHHHHHHHHHTTSSCEEEEECSHHHH--
T ss_pred CcccccccCCCCccHHHHHHHHHHHHHH-HHHHHHhhhhhhhccCC-CCCcChhHHHHHHHHcCCCcEEEEECchhHH--
Confidence 0000 111122222110 000000 00000011 1123344445555568899999999876432
Q ss_pred HHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCc
Q 009282 244 GQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDD 323 (538)
Q Consensus 244 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~ 323 (538)
.+++++..+.+.++.+.|+.... +.++++++.|+.++.+|.....
T Consensus 234 -----------------------------~~~~~~~~~~g~~~~i~H~~~~~--~~~~~l~~~gv~v~~~P~~~~~---- 278 (396)
T 3ooq_A 234 -----------------------------LTAIRIAEEFGFNLVIEHGTEAY--KISKVLAEKKIPVVVGPLLTFR---- 278 (396)
T ss_dssp -----------------------------HHHHHHHHHHTCCEEEEECTTGG--GGHHHHHHHTCCEEECCCSSCC----
T ss_pred -----------------------------HHHHHHHHHcCCCEEEecCchHH--HHHHHHHHCCCCEEECcccccc----
Confidence 33445556667888899998866 4588899999999988753110
Q ss_pred ccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHH
Q 009282 324 SWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403 (538)
Q Consensus 324 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~ 403 (538)
.++... .....+++.++++|++++++||++..+.. .+......
T Consensus 279 -----~~~~~~-----------~~~~~~~~~l~~~Gv~v~lgtD~~~~~~~---------------------~l~~~~~~ 321 (396)
T 3ooq_A 279 -----TKLELK-----------DLTMETIAKLLKDGVLIALMCDHPVIPLE---------------------FATVQAAT 321 (396)
T ss_dssp -----CSGGGT-----------TCCTTHHHHHHHTTCCEEECCTTTTSCGG---------------------GHHHHHHH
T ss_pred -----cchhHH-----------hhhhHHHHHHHHCCCEEEEEcCCCccCcc---------------------HHHHHHHH
Confidence 000000 01124578899999999999997533211 12222323
Q ss_pred hhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEE
Q 009282 404 MVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIA 483 (538)
Q Consensus 404 ~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v 483 (538)
+.. .+++++++|+++|.|||+++|+++++|+|++||.|||||||.|++.. ..+|..||+
T Consensus 322 ~~~-~gl~~~~al~~~T~n~A~~lg~~~~~G~i~~G~~ADlvv~d~~~~~~--------------------~~~v~~v~~ 380 (396)
T 3ooq_A 322 AMR-YGAKEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVWSGHPFDM--------------------KSVVERVYI 380 (396)
T ss_dssp GGG-GTCCHHHHHHTTTHHHHHHTTCTTTSSSCCTTSBCCEEEESSCTTST--------------------TCCEEEEEE
T ss_pred HHH-cCCCHHHHHHHHHHHHHHHhCCCCCeeeECCCCcCCEEEECCCcccc--------------------ccceeEEEE
Confidence 334 46999999999999999999998889999999999999999876521 247999999
Q ss_pred CCEEEEECCe
Q 009282 484 GGRVVWENDE 493 (538)
Q Consensus 484 ~G~~V~~~~~ 493 (538)
+|++||+..+
T Consensus 381 ~G~~v~~~~~ 390 (396)
T 3ooq_A 381 DGVEVFRREG 390 (396)
T ss_dssp TTEEEEECC-
T ss_pred CCEEEeCCCC
Confidence 9999999754
|
| >3nqb_A Adenine deaminase 2; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics, nysgxrc; 2.21A {Agrobacterium tumefaciens} PDB: 3t81_A 3t8l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=297.53 Aligned_cols=332 Identities=19% Similarity=0.164 Sum_probs=224.5
Q ss_pred CcccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHH
Q 009282 51 SSSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFF 128 (538)
Q Consensus 51 ~~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~ 128 (538)
++++++|+|++|+++.+ ...++|+|+||||++|++....+++.++||++|++|+|||||+|+|+..+ ..+++.
T Consensus 33 ~~~dlli~n~~ivd~~~~~~~~~dI~I~~G~I~~Vg~~~~~~~~~~vID~~G~~v~PG~ID~H~Hl~~~---~~~~~~-- 107 (608)
T 3nqb_A 33 QRFDVLITGGTLVDVVTGELRPADIGIVGALIASVHEPASRRDAAQVIDAGGAYVSPGLIDTHMHIESS---MITPAA-- 107 (608)
T ss_dssp SCEEEEEESCEEECTTTCCEEECEEEEETTEEEEEECTTSCCCEEEEEECTTSEEEECEEEEEECGGGG---TSCHHH--
T ss_pred CCCCEEEECeEEEECCCCeEEeeEEEEECCEEEEecCCCCCCCCCeEEeCCCCEEecCeEecccCcccc---cCCHHH--
Confidence 37889999999999864 46789999999999999865434568899999999999999999999765 234443
Q ss_pred HHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcccceeeeeee-eeec----C----ChhhHHHHHHHHHHcCCc
Q 009282 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHM-AITK----W----DEVVSDEMEVMVKEKGIN 198 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~----~~~~~~~~~~~~~~~g~~ 198 (538)
..+.++.+||||++++...... ...+.++...+.......++.+.. ...+ . .....+++.++.+..++.
T Consensus 108 -~~~~al~~GvTtvv~~p~~~~~v~g~~~~~~~l~~a~~~~~~v~~~~p~~~P~~~~~~~~g~~~~~~el~~l~~~~~v~ 186 (608)
T 3nqb_A 108 -YAAAVVARGVTTIVWDPHEFGNVHGVDGVRWAAKAIENLPLRAILLAPSCVPSAPGLERGGADFDAAILADLLSWPEIG 186 (608)
T ss_dssp -HHHHHHTTTEEEEEECCHHHHHHHTHHHHHHHHHHHTTCSSEEEEEECCCSSSSTTSCCCSCCCCHHHHHHHHTSTTEE
T ss_pred -HHHHHHhCCeEEEEcCCccccccCCHHHHHHHHHHhhhcCcEEEEeccccCCCCCccccCcccCCHHHHHHHHhccCcc
Confidence 3688999999999975321111 123444444444444344433332 1111 0 112355677776556888
Q ss_pred EEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHH
Q 009282 199 SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRL 278 (538)
Q Consensus 199 ~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~ 278 (538)
+++.+.++.+. ..+.+.+.+.++.|++.|+++.+|+..... ..+..+...
T Consensus 187 glgE~~~~~~v-~~~d~~l~~~l~~A~~~g~pV~~Ha~~~~~--~~L~~~~~a--------------------------- 236 (608)
T 3nqb_A 187 GIAEIMNMRGV-IERDPRMSGIVQAGLAAEKLVCGHARGLKN--ADLNAFMAA--------------------------- 236 (608)
T ss_dssp EEEEECCHHHH-HTTCHHHHHHHHHHHHHTCEEEECCTTCCH--HHHHHHHHT---------------------------
T ss_pred eeeEeeccCCc-CCCcHHHHHHHHHHHHcCCEEEEcCCCCCH--HHHHHHHHc---------------------------
Confidence 88887766432 236788999999999999999999975432 222222222
Q ss_pred HHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHh-
Q 009282 279 AEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALA- 357 (538)
Q Consensus 279 ~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~- 357 (538)
+.. ..|+....+ +.++.+ +.|..+... .. .. .....+..+++
T Consensus 237 ----Gv~--~~H~~~~~e-ea~e~l-~~G~~i~i~-gs-------------------~~---------~~~~~l~~~i~~ 279 (608)
T 3nqb_A 237 ----GVS--SDHELVSGE-DLMAKL-RAGLTIELR-GS-------------------HD---------HLLPEFVAALNT 279 (608)
T ss_dssp ----TCC--EECCCCSHH-HHHHHH-HTTCEEEEE-SS-------------------SG---------GGHHHHHHHHHH
T ss_pred ----CCC--eeeccCCHH-HHHHHH-HCCCEEEEe-cc-------------------cc---------ccHHHHHHHHHh
Confidence 322 368766553 555555 478776644 21 00 01122333333
Q ss_pred ---cCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCc
Q 009282 358 ---TGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 434 (538)
Q Consensus 358 ---~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~G 434 (538)
.|++++++||+....+... +..+...++.+++. |++++++++++|.|||++||+ +++|
T Consensus 280 ~~~~g~~v~lgTD~~~p~~~~~-----------------~g~l~~~v~~~~~~-Gls~~eal~~aT~n~A~~lgl-~~~G 340 (608)
T 3nqb_A 280 LGHLPQTVTLCTDDVFPDDLLQ-----------------GGGLDDVVRRLVRY-GLKPEWALRAATLNAAQRLGR-SDLG 340 (608)
T ss_dssp HTSCCTTEEEECBSCCHHHHHH-----------------TCSHHHHHHHHHHT-TCCHHHHHHHHTHHHHHHHTC-TTSS
T ss_pred HhhcCceEEEecCCCCCcchhh-----------------hcchHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCC-CCCc
Confidence 7999999999642111100 11344455455555 699999999999999999999 6789
Q ss_pred ccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeecc
Q 009282 435 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497 (538)
Q Consensus 435 sI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~ 497 (538)
+|++||.||||++|.-. ..+|..||++|++|+++|+++..
T Consensus 341 ~i~~G~~ADlvv~d~l~-----------------------~~~v~~v~~~G~~v~~~g~~~~~ 380 (608)
T 3nqb_A 341 LIAAGRRADIVVFEDLN-----------------------GFSARHVLASGRAVAEGGRMLVD 380 (608)
T ss_dssp CCSTTSBCCEEEESCTT-----------------------TCCEEEEEETTEEEEETTEECSC
T ss_pred CcCCCCCccEEEECCCC-----------------------CCcceEEEECCEEEEECCeEecc
Confidence 99999999999998411 13699999999999999998753
|
| >4ac7_C Urease subunit alpha; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 4ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=298.49 Aligned_cols=343 Identities=18% Similarity=0.177 Sum_probs=221.3
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC------------CCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~------------~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
+++++|+|++|++..+...++|+|+||||++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 66 ~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~P-- 143 (570)
T 4ac7_C 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINP-- 143 (570)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred CCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEecccccCCc--
Confidence 56899999999998777789999999999999985321 3467899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCCC-------CC-CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHH
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-------NG-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
+. .+.++++||||+++.+... .. .....++...+......++++++..... +...++.++
T Consensus 144 g~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~---~~l~el~el 211 (570)
T 4ac7_C 144 DQ---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG---SSIAPIMEQ 211 (570)
T ss_dssp TH---------HHHHHHTTEEEEEEECSSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCC---SSHHHHHHH
T ss_pred ch---------HHHHHhcCCeEEEecCcCcccccCCcCcCCcHHHHHHHHHHhhhCCeeEEEEeccCC---cCHHHHHHH
Confidence 21 3678999999999643211 11 2344555555555667788888775432 346677777
Q ss_pred HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
. +.|+.++|.+.++ ..+.+.++++++.|+++|+++.+|+++........+.+
T Consensus 212 ~-~aGa~gfK~~~~~----~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~g~Vedal----------------------- 263 (570)
T 4ac7_C 212 I-DAGAAGLKIHEDW----GATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTL----------------------- 263 (570)
T ss_dssp H-HHTCCEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHH-----------------------
T ss_pred H-HcCCCeEeeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCcchhhHHHHHH-----------------------
Confidence 7 7899999998654 35899999999999999999999998643211111111
Q ss_pred HHHHHHHHHHcCCCEEEEeccCH---HHHHHHHHHHHcCCcEEEeccc----ccc--------------ccCcccccCCC
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKAGQRVIGEPVV----SGL--------------VLDDSWLWHSD 330 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~~---~~~~~i~~~~~~g~~v~~~~~~----~~~--------------~~~~~~~~~~~ 330 (538)
+ ...+..++..|.... ...+.++.+.+.+ |.+.... +.. ++++....+..
T Consensus 264 -----e--a~~Gr~ih~~HiEgag~~hapd~i~~~~~~~--vlps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~ 334 (570)
T 4ac7_C 264 -----R--AINGRVIHSFHVEGAGGGHAPDIMAMAGHPN--VLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVA 334 (570)
T ss_dssp -----H--HHTTCCEEETTTTSTTSSSTTTGGGGGGSTT--EEEBCCGGGSSCBTTHHHHHHHHHHHHTTCCTTCHHHHH
T ss_pred -----H--HhCCCcceeEeeeccccccChHHHHHhccCC--ccccccCCCCCcccchhHHhhhheeeecccCccccchhH
Confidence 1 112344454444321 1113344333333 3332210 000 00110000000
Q ss_pred cccccceeecCCCCCc-ccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh----
Q 009282 331 FVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV---- 405 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~-~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~---- 405 (538)
|.. .|.. +...+.+.+++.|+.+++|||++........ + ...+........
T Consensus 335 ~a~---------~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~-----~----------~~~~~~a~~~~~~rg~ 390 (570)
T 4ac7_C 335 FAD---------SRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEM-----V----------LRTWQTADKMKKQRGP 390 (570)
T ss_dssp HHH---------HHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCH-----H----------HHHHHHHHHHHHHHCS
T ss_pred HHH---------hhhhhhhcccccchhhcCCEEEEECcccccCCcCcc-----c----------CcHHHHHHHHHHhcCC
Confidence 000 0011 1223456789999999999997643311000 0 000111000000
Q ss_pred ------hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEE
Q 009282 406 ------ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVE 479 (538)
Q Consensus 406 ------~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 479 (538)
...++++++||+++|.|||+++|+++.+|+|++||.|||||||.+++ ..+|.
T Consensus 391 l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~----------------------~~~v~ 448 (570)
T 4ac7_C 391 LAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFF----------------------GVKAD 448 (570)
T ss_dssp CTTCCTTCCHHHHHHHHHHHTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGT----------------------TTSCS
T ss_pred CCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECchhc----------------------cCceE
Confidence 12347899999999999999999988899999999999999997643 13678
Q ss_pred EEEECCEEEEEC
Q 009282 480 VTIAGGRVVWEN 491 (538)
Q Consensus 480 ~V~v~G~~V~~~ 491 (538)
.||++|++||+.
T Consensus 449 ~t~~~G~~v~~~ 460 (570)
T 4ac7_C 449 RVIKGGIIAYAQ 460 (570)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEcc
Confidence 999999999986
|
| >4ubp_C Protein (urease (chain C)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.92.1.1 c.1.9.2 PDB: 1s3t_C* 2ubp_C* 3ubp_C* 1ubp_C* 1ie7_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=296.95 Aligned_cols=343 Identities=18% Similarity=0.177 Sum_probs=221.3
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC------------CCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV------------GDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~------------~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
+++++|+|++|++..+...++|+|+||||++|++.... ..++++||++|++|+|||||+|+|+..+
T Consensus 66 ~~dllI~n~~vvd~~g~~~~dI~I~dG~I~~Ig~~~~~~~~~~v~~~~~~~~~~~vIDa~G~~v~PG~ID~HvH~~~P-- 143 (570)
T 4ubp_C 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTAGGIDTHVHFINP-- 143 (570)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred CCCEEEECeEEECCCCcEEEEEEEECCEEEEeecCCCccccccccccccCCCCceEEeCCCCEEeeCEEEcccCCCCc--
Confidence 56899999999998777789999999999999985321 3467899999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCCC-------CC-CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHH
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPI-------NG-SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
+. .+.++++||||+++.+... .. .....++...+......++++++..... +...++.++
T Consensus 144 g~---------~~aAl~gGvTTvv~gg~~p~~~~n~~p~~~~~~~l~~~l~aa~~~~v~~~~~g~~~~---~~l~el~el 211 (570)
T 4ubp_C 144 DQ---------VDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG---SSIAPIMEQ 211 (570)
T ss_dssp TH---------HHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEECCC---SSHHHHHHH
T ss_pred ch---------HHHHHhcCCeEEEecCccccccCCCcCCCCcHHHHHHHHHHhhhCCeeEEEEeccCC---cCHHHHHHH
Confidence 21 3678999999999643211 11 2344555555555667788888775432 346677777
Q ss_pred HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
. +.|+.++|.+.++ ..+.+.++++++.|+++|+++.+|+++........+.+
T Consensus 212 ~-~aGa~gfK~~~~~----~~~~~~L~~aL~~A~~~g~~V~iHae~l~e~g~Vedal----------------------- 263 (570)
T 4ubp_C 212 I-DAGAAGLKIHEDW----GATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTL----------------------- 263 (570)
T ss_dssp H-HHTCCEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHH-----------------------
T ss_pred H-HcCCCeEeeccCC----CCCHHHHHHHHHHHHHcCCEEEEEcCCcchhhHHHHHH-----------------------
Confidence 7 7899999998654 35899999999999999999999998643211111111
Q ss_pred HHHHHHHHHHcCCCEEEEeccCH---HHHHHHHHHHHcCCcEEEeccc----ccc--------------ccCcccccCCC
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMSM---DAMEEIAKARKAGQRVIGEPVV----SGL--------------VLDDSWLWHSD 330 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~~---~~~~~i~~~~~~g~~v~~~~~~----~~~--------------~~~~~~~~~~~ 330 (538)
+ ...+..++..|.... ...+.++.+.+.+ |.+.... +.. ++++....+..
T Consensus 264 -----e--a~~Gr~ih~~HiEgag~~hapd~i~~~~~~~--vlps~t~Pt~p~~~n~~~e~ld~l~v~hhl~~~i~~D~~ 334 (570)
T 4ubp_C 264 -----R--AINGRVIHSFHVEGAGGGHAPDIMAMAGHPN--VLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVA 334 (570)
T ss_dssp -----H--HHTTCCEEETTTTSTTSSSTTTGGGGGGSTT--EEEBCCSTTSSCBTTHHHHHHHHHHHHHTCCTTSHHHHH
T ss_pred -----H--HhCCCceeEEEecccccccChHHHHHhccCC--ccccccCCCCCcccchhHHhhhheeeecccCccccchhH
Confidence 0 112344444444321 1113344333333 3332210 000 00110000000
Q ss_pred cccccceeecCCCCCc-ccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh----
Q 009282 331 FVTAAKYVMSPPIRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV---- 405 (538)
Q Consensus 331 ~~~~~~~~~~p~~r~~-~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~---- 405 (538)
|.. .|.. +...+.+.+++.|+.+++|||++........ + ...+........
T Consensus 335 ~a~---------~Rir~~~i~a~~~L~d~G~~v~~gSD~p~~~~~ge~-----~----------~~~~~~a~~~~~~rg~ 390 (570)
T 4ubp_C 335 FAD---------SRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEM-----V----------LRTWQTADKMKKQRGP 390 (570)
T ss_dssp HHH---------HHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCH-----H----------HHHHHHHHHHHHHHCS
T ss_pred HHH---------hhhhhhccccccchhhcCCEEEEECcccccCCcCcc-----c----------CcHHHHHHHHHHhcCC
Confidence 000 0011 1223456789999999999997643311000 0 000111000000
Q ss_pred ------hcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEE
Q 009282 406 ------ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVE 479 (538)
Q Consensus 406 ------~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 479 (538)
...++++++||+++|.|||+++|+++.+|+|++||.|||||||.+++ ..+|.
T Consensus 391 l~~~~~~~~~~~~~eal~~~T~~~A~~lg~~~~~Gsi~~Gk~ADlvvld~d~~----------------------~~~v~ 448 (570)
T 4ubp_C 391 LAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADLVLWEPKFF----------------------GVKAD 448 (570)
T ss_dssp CTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCEEEECGGGT----------------------TTSCS
T ss_pred CCCccccccCCCHHHHHHHHhHHHHHHhCCCCCCcccCCCCccCEEEECcccc----------------------cCCee
Confidence 12347899999999999999999988899999999999999997643 13678
Q ss_pred EEEECCEEEEEC
Q 009282 480 VTIAGGRVVWEN 491 (538)
Q Consensus 480 ~V~v~G~~V~~~ 491 (538)
.||++|++||+.
T Consensus 449 ~t~~~G~~v~~~ 460 (570)
T 4ubp_C 449 RVIKGGIIAYAQ 460 (570)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEec
Confidence 999999999986
|
| >2vhl_A N-acetylglucosamine-6-phosphate deacetylase; N- acetyleglucosamine-6-phosphate, carbohydrate metabolism, hydrolase; HET: GLP PGE; 2.05A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=284.55 Aligned_cols=361 Identities=17% Similarity=0.185 Sum_probs=208.5
Q ss_pred cccEEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCCCCCceEEecC-CCeeecccccccccccccc-CCCCChhhHH
Q 009282 52 SSKILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDAT-GKFVMPGGIDPHTHLAMEF-MGSETIDDFF 128 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~-G~~v~PGlID~H~H~~~~~-~~~~~~~~~~ 128 (538)
.++++|+|++|+++++. .+++|+|+||||++|++..+..++.++||++ |++|+|||||+|+|+..+. .+..+++++.
T Consensus 2 ~~~~li~~~~v~~~~~~~~~~~v~I~~g~I~~ig~~~~~~~~~~viD~~~g~~v~PGlID~H~H~~~~~~~~~~~~e~~~ 81 (396)
T 2vhl_A 2 AESLLIKDIAIVTENEVIKNGYVGINDGKISTVSTERPKEPYSKEIQAPADSVLLPGMIDIHIHGGYGADTMDASFSTLD 81 (396)
T ss_dssp -CCEEEEEEEEECSSCEEEEEEEEEETTEEEEEESSCCSSCCSEEEECCTTCEEEECEEEEEECEETTEEGGGCSHHHHH
T ss_pred CccEEEEeeEEEcCCccccCceEEEECCEEEEEECCCCCCCCCceEcCCCCCEEcCCEEEEeecCCcCccccCCCHHHHH
Confidence 45789999999998764 5789999999999999321111246899999 9999999999999997641 1134677787
Q ss_pred HHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc--c----cceeeeeeeeeec-------------CChhhHHHH
Q 009282 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK--N----SCMDYGFHMAITK-------------WDEVVSDEM 188 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~-------------~~~~~~~~~ 188 (538)
...+.++++||||++|+...... .....++...+... . +...++++..... ......+.+
T Consensus 82 ~~~~~~l~~GvTtv~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 161 (396)
T 2vhl_A 82 IMSSRLPEEGTTSFLATTITQEHGNISQALVNAREWKAAEESSLLGAELLGIHLEGPFVSPKRAGAQPKEWIRPSDVELF 161 (396)
T ss_dssp HHHHHGGGGTEEEEEEECCSCCHHHHHHHHHHHHHHHHHCSGGGSSSEEEEEEEECSSSCGGGCTTSCGGGCCCCCHHHH
T ss_pred HHHHHHHcCCeeEEEecccCCCHHHHHHHHHHHHHHHhcccccccccceEEEeeecCccCccccCCCCHHHccCCCHHHH
Confidence 88899999999999998643222 12223333333322 1 1212333222111 001124456
Q ss_pred HHHHHHcCCcEEEEEe-eeCCCccCCHHHHHHHHHHHHhcCCeEEE-EcC-ChhhHHHHHHHHHHcCCCCccccc-cc-C
Q 009282 189 EVMVKEKGINSFKFFM-AYKGSFMINDELLIEGFKRCKSLGALAMV-HAE-NGDAVFEGQKRMIELGITGPEGHA-LS-R 263 (538)
Q Consensus 189 ~~~~~~~g~~~ik~~~-~~~~~~~~~~~~l~~~~~~A~~~g~~v~~-H~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~-~ 263 (538)
+++. +.+.+.+|++. .+... ...++++.|+++|+++.. |+. ....+. .+.+.|.. ...|. .. .
T Consensus 162 ~~~~-~~~~~~ik~~~~~p~~~------~~~~~~~~a~~~g~~v~~gH~~~~~~~~~----~a~~~G~~-~i~H~~~~~~ 229 (396)
T 2vhl_A 162 KKWQ-QEAGGLIKIVTLAPEED------QHFELIRHLKDESIIASMGHTDADSALLS----DAAKAGAS-HMTHLYNAMS 229 (396)
T ss_dssp HHHH-HHTTTCEEEEEECGGGS------GGGHHHHHHHHTTCEEEECSBCCCHHHHH----HHHHTTCC-EESSTTSSBC
T ss_pred HHHH-HhcCCcceEEEECCCCC------CHHHHHHHHHHCCCEEeecccCCCHHHHH----HHHHcCCC-EeEeCCccCc
Confidence 6665 45666677442 22111 123667889999999988 996 343332 33445654 22222 11 1
Q ss_pred CchHHHHHHHHHHHHHHHcCCCE---EEEeccCHHHHHHHHHHHHc-CC-cEEEeccccccccCcccccCCCccccccee
Q 009282 264 PPLLEGEATTRAIRLAEFVNTPL---YVVHVMSMDAMEEIAKARKA-GQ-RVIGEPVVSGLVLDDSWLWHSDFVTAAKYV 338 (538)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~~---~~~h~~~~~~~~~i~~~~~~-g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (538)
+.......+ +. ......++ .+.|+..... +.++.+++. +. .+..++.. ++. . .... ..+.
T Consensus 230 ~~~~~~~G~---~~-~~~~~~~~~~e~~~h~~~l~~-~~~~~~~~~~~~~~~~~~~~~--~~~--~-----g~~~-~~~~ 294 (396)
T 2vhl_A 230 PFHHREPGV---IG-TALAHDGFVTELIADGIHSHP-LAAKLAFLAKGSSKLILITDS--MRA--K-----GLKD-GVYE 294 (396)
T ss_dssp CCCSSSCHH---HH-HHHHCTTCEEEEECSSSSSCH-HHHHHHHHHHCTTSEEEECCB--CTT--T-----TSCS-EEEE
T ss_pred ccccCCCCc---hh-hhhcCCCcEEEEcCCccccCH-HHHHHHHhhcCCccEEEECcC--hhh--c-----CCCC-ceEE
Confidence 100000000 00 00001122 3445544333 344444443 43 34443322 100 0 0000 0011
Q ss_pred ecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHH
Q 009282 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418 (538)
Q Consensus 339 ~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~ 418 (538)
+.| +..+.+.| .+.+ +|+ +.++.+..+...++.++...++|++++|++
T Consensus 295 ~~~----------~~~~~~~g-~~~~-~d~--------------------~~~g~~~~l~~~l~~~~~~~~~~~~~~l~~ 342 (396)
T 2vhl_A 295 FGG----------QSVTVRGR-TALL-SDG--------------------TLAGSILKMNEGARHMREFTNCSWTDIANI 342 (396)
T ss_dssp ETT----------EEEEEETT-EEEC-TTS--------------------CBCSBCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ECC----------eEEEEECC-EEEe-CCC--------------------cccccccCHHHHHHHHHHhcCCCHHHHHHH
Confidence 111 11122334 3333 332 223333445556655666556999999999
Q ss_pred HhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeec
Q 009282 419 TSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 496 (538)
Q Consensus 419 aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~ 496 (538)
+|.|||++||+++++|+|++||.|||||+|.+ .+|..||++|++||+++++-+
T Consensus 343 aT~~~A~~lgl~~~~G~i~~G~~ADlvv~d~~-------------------------~~v~~v~~~G~~v~~~~~~~~ 395 (396)
T 2vhl_A 343 TSENAAKQLGIFDRKGSVTVGKDADLVIVSSD-------------------------CEVILTICRGNIAFISKEADQ 395 (396)
T ss_dssp HTHHHHHHHTCTTTSSSCCTTSBCCEEEECTT-------------------------CCEEEEEETTEEEEECSCCC-
T ss_pred HHHHHHHHhCCcCCCceeCCCCcCCEEEECCC-------------------------CcEEEEEECCEEEEecccccc
Confidence 99999999999777999999999999999966 368999999999999987643
|
| >3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct phosphate, carbohydrate metabolism, hydrolase; HET: F6P; 2.53A {Vibrio cholerae} PDB: 3egj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=279.56 Aligned_cols=356 Identities=17% Similarity=0.186 Sum_probs=231.6
Q ss_pred EEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc--cCCCCChhhHHHHH
Q 009282 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME--FMGSETIDDFFSGQ 131 (538)
Q Consensus 55 ~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~--~~~~~~~~~~~~~~ 131 (538)
++|+|++|++++.. .+++|+|+||||++|++....+.+.++||++|++|+|||||+|+|...+ +....+.+.+.+..
T Consensus 5 ~~i~n~~i~~~~~~~~~~~i~I~dG~I~~i~~~~~~~~~~~viD~~G~~v~PGfID~HvHg~~G~~~~d~~~~e~l~~~~ 84 (381)
T 3iv8_A 5 YALTNCKIYTGNDVLVKHAVIINGDKIEAVCPIESLPSEMNVVDLNGANLSPGFIDLQLNGCGGVMFNDEITAETIDTMH 84 (381)
T ss_dssp EEEEEEEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCEEEEEEEEEEEECEEEEEECEETTEETTTSCSHHHHHHHH
T ss_pred EEEEccEEEcCCCeEeccEEEEECCEEEEEeCCCCCCCCCeEEECCCCEEccCeEeeeecccCCCCCCCCCCHHHHHHHH
Confidence 68999999998875 4679999999999999865545568899999999999999999997654 22335678888999
Q ss_pred HHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcc-cceeeeeeeeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCC
Q 009282 132 AAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGS 209 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~ 209 (538)
+.++++||||++++....+. .+.+.++.+.+.... .....|++...+..+.+ +.|+..-.. .
T Consensus 85 ~a~~~~GvTt~l~t~~T~~~e~l~~al~~~~~~~~~~~~~ilGiHlEGPfis~~----------~~Ga~~~~~------i 148 (381)
T 3iv8_A 85 KANLKSGCTSFLPTLITSSDENMRQAIAAAREYQAKYPNQSLGLHLEGPYLNVM----------KKGIHSVDF------I 148 (381)
T ss_dssp HHHHHTTEEEEEEEEESCCHHHHHHHHHHHHHHHHHCSSSBCCEEEECSSCCGG----------GCTTSCTTT------C
T ss_pred HHHHhCCccccccccCCCCHHHHHHHHHHHHHHHhcCCCceeEeeccCcccCHh----------hcCCCCHHH------c
Confidence 99999999999987544433 444555544443322 22345666666655542 334422111 1
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
...+.++++++.+.+. ++.+...+++... .+.++.+.+.|+..+.+|+.+. +++..++++ .|.. +++
T Consensus 149 ~~p~~~~~~~~~~~~~--~i~~vTlAPE~~~-~~~i~~l~~~gi~vs~GHs~A~-----~e~~~~a~~----~Ga~-~~T 215 (381)
T 3iv8_A 149 RPSDDTMIDTICANSD--VIAKVTLAPENNK-PEHIEKLVKAGIVVSIGHTNAT-----YSEARKSFE----SGIT-FAT 215 (381)
T ss_dssp CCCCHHHHHHHHHTTT--SEEEEEECCTTSC-HHHHHHHHHTTCEEEECSBCCC-----HHHHHHHHH----TTCC-EES
T ss_pred CCCCHHHHHHHHhccC--CeEEEEECCCCCc-HHHHHHHHHCCCEEEecCCCCC-----HHHHHHHHH----cCCC-Eee
Confidence 2346777777765432 4666666655443 5677777777887777776432 233333333 3333 366
Q ss_pred eccCHH------HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceE
Q 009282 290 HVMSMD------AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQL 363 (538)
Q Consensus 290 h~~~~~------~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~ 363 (538)
|+.++- ..-.+-..-.. -.++++...+..+.++..+. .+.++. |-++.
T Consensus 216 HlfNaM~~~~hR~PG~vga~l~~-~~~~~elI~DG~Hv~p~~~~-----------------------~~~~~~--g~~~~ 269 (381)
T 3iv8_A 216 HLFNAMTPMVGREPGVVGAIYDT-PEVYAGIIADGFHVDYANIR-----------------------IAHKIK--GEKLV 269 (381)
T ss_dssp STTSSBCCCBTTBCHHHHHHHHC-TTCEEEEECSSSSSCHHHHH-----------------------HHHHHH--GGGEE
T ss_pred eCCCCCCCccCCCCchHHHHhcC-CCcEEEEEcCCccCCHHHHH-----------------------HHHHhc--CCEEE
Confidence 664421 00112111111 23566666666655554321 122222 46788
Q ss_pred EeCCCCCCCh---hhhhcC------ccCcccCCCC-CcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCC
Q 009282 364 VGTDHCAFNS---TQKAFG------IDDFRKIPNG-VNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRK 433 (538)
Q Consensus 364 lgtD~~~~~~---~~~~~~------~~~~~~~~~g-~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~ 433 (538)
+-||.....- ....++ .+.......| ++|....+...++++++..++|+++||+++|.|||+++|+++++
T Consensus 270 lvTDam~a~G~~dg~y~lgg~~v~v~~g~~~l~~g~lAGs~l~l~~~v~~~v~~~g~~~~~al~~aT~~pA~~lg~~~~~ 349 (381)
T 3iv8_A 270 LVTDATAPAGAEMDYFIFVGKKVYYRDGKCVDENGTLGGSALTMIEAVQNTVEHVGIALDEALRMATLYPAKAIGVDEKL 349 (381)
T ss_dssp EECCBCTTTTSCCSEEESSSCEEEEETTEEECTTCCBCSBCCCHHHHHHHHHHTTCCCHHHHHHHHTHHHHHHHTCTTTS
T ss_pred EEeCcccccCCCCCeeecCCeEEEEECCEEEcCCCCccChhhhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhCCCCCC
Confidence 8898654221 111111 0111122233 56666678888888888878999999999999999999998889
Q ss_pred cccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE
Q 009282 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 434 GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
|+|++||.||||+||.+ .+|+.||++|++||+
T Consensus 350 G~i~~G~~ADlvvld~~-------------------------~~v~~t~~~G~~v~~ 381 (381)
T 3iv8_A 350 GRIKKGMIANLTVFDRD-------------------------FNVKATVVNGQYEQN 381 (381)
T ss_dssp SSCCTTSBCCEEEECTT-------------------------CCEEEEEETTEEEEC
T ss_pred ceECCCCcCCEEEECCC-------------------------CCEEEEEECCEEeeC
Confidence 99999999999999954 268999999999984
|
| >3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family, N-formimino-L-glutamate iminohydrolas guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas aeruginosa} PDB: 3mdw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=293.97 Aligned_cols=362 Identities=14% Similarity=0.096 Sum_probs=230.4
Q ss_pred EECcEEEcCCCc-eeeeEEE-eCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCC--------------
Q 009282 57 IKGGTVVNAHHQ-QIADVYV-EDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG-------------- 120 (538)
Q Consensus 57 i~n~~vv~~~~~-~~~~V~I-~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~-------------- 120 (538)
|...+++.+++. ++++|+| +||+|++||+..+. ..++|++| +|+|||||+|+|+.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~v~i~~~g~I~~ig~~~~~---~~~~d~~g-~v~PGfId~H~H~~~~~~rg~~~~~~~~~~~l~ 79 (453)
T 3mdu_A 4 IFAERALLPEGWARNVRFEISADGVLAEIRPDANA---DGAERLGG-AVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFW 79 (453)
T ss_dssp EEEEEEEETTEEEEEEEEEECTTSBEEEEESSCCC---TTSEECSS-CEEECEEEEEECGGGGGGTTTTCCCSSTTCCHH
T ss_pred cchhheecCCceecCeEEEEecCCEEEEecCCCCc---ccccccCC-cccccceecccchHHHhhccccccccCCCCcHH
Confidence 445667777764 7899999 89999999987543 34579999 9999999999999654211
Q ss_pred -----------CCChhhHHHHH----HHHHhCCcEEEecccCCCC-------C----CHHHHHHHHHHHhcccceeeeee
Q 009282 121 -----------SETIDDFFSGQ----AAALAGGTTMHIDFVIPIN-------G----SLTAGFEAYEKKAKNSCMDYGFH 174 (538)
Q Consensus 121 -----------~~~~~~~~~~~----~~~l~~GvTt~~d~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~ 174 (538)
..++++++..+ ..++++||||+.|+..... . ......++..+.+.+..+...+.
T Consensus 80 ~wl~~~~~~~~~~~~e~~~~~a~~~~~e~l~~GvTtv~d~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~Gir~~~~~~~~ 159 (453)
T 3mdu_A 80 TWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLY 159 (453)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTEEEEEEEECCCSCTTSCCCSSTTHHHHHHHHHHHHHTCEEEEEECBC
T ss_pred HHHHHHhhhhhhCCHHHHHHHHHHHHHHHHHcCCcEEEEeeEeccccccccccchhhHHHHHHHHHHHhCCeEEEecchh
Confidence 12444444333 3368899999999743110 1 12345555555555533321111
Q ss_pred e--ee------------ecCChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEc-C
Q 009282 175 M--AI------------TKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA-E 236 (538)
Q Consensus 175 ~--~~------------~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~-~ 236 (538)
. .. ....++..+.+..+.. ..+. .+.+.+++.+.++++.++++++.|+ .|+++++|+ +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~~~~~~~e~l~~~~~~A~-~g~~v~~H~~e 235 (453)
T 3mdu_A 160 SHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGH---SLGLCFHSLRAVTPQQIATVLAAGH-DDLPVHIHIAE 235 (453)
T ss_dssp CBSSTTTCBCCGGGGGGCCCHHHHHHHHHHHHHHHHHHTC---EECEEEEETTTSCHHHHHHHHTSSC-TTSCEEEEESC
T ss_pred ccccccCCCCchhhhhccCCHHHHHHHHHHHHHHhhcCCC---eEEEecCCCCcCCHHHHHHHHHHHh-cCCCEEEEeCC
Confidence 1 00 0111222333333321 1232 4445666667889999999999999 999999997 5
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccc
Q 009282 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~ 316 (538)
+..+.....+. .|.. .++.+ ......+.++.+.|+...++ +.++++++.|+.++.||.+
T Consensus 236 ~~~e~~~~~~~---~g~~----------------~v~~l-~~~g~~~~~~~~~H~~~~~~-~~i~~la~~g~~v~~~P~s 294 (453)
T 3mdu_A 236 QQKEVDDCQAW---SGRR----------------PLQWL-YENVAVDQRWCLVHATHADP-AEVAAMARSGAVAGLCLST 294 (453)
T ss_dssp SHHHHHHHHHH---HSSC----------------HHHHH-HHHSCCCTTEEEEECCSCCH-HHHHHHHHHTCEEEECHHH
T ss_pred CHHHHHHHHHH---hCCC----------------HHHHH-HHcCCCCCCeEEEEcCCCCH-HHHHHHHHcCCEEEECchh
Confidence 55444433322 2321 11222 22234567889999998877 8899999999999988874
Q ss_pred cccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhh
Q 009282 317 SGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEER 396 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~ 396 (538)
. +..+.+. +| ++.++++|+++++|||.....+. +. ++.
T Consensus 295 n-------------~~lg~g~---~p---------~~~~~~~Gv~v~lgtD~~~~~~~--------~~---------~~~ 332 (453)
T 3mdu_A 295 E-------------ANLGDGI---FP---------ATDFLAQGGRLGIGSDSHVSLSV--------VE---------ELR 332 (453)
T ss_dssp H-------------HHTTCCC---CC---------HHHHHHTTCEEEECCBTCSCCCH--------HH---------HHH
T ss_pred H-------------hhcCCCC---CC---------HHHHHHCCCEEEEECCCCCCCCH--------HH---------HHH
Confidence 2 2222221 12 78899999999999996422111 11 222
Q ss_pred HHHHHHHhhh---------cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceee--ccCcccCCCC
Q 009282 397 MHLVWDTMVE---------SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEI--TARSHHSRLD 465 (538)
Q Consensus 397 ~~~~~~~~~~---------~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~--~~~~~~~~~~ 465 (538)
......+... ..+++++++|+++|.|||+++|+ ++|+|++||.|||||+|.+.++.. +..++. .
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~a~~~~~--~~G~l~~G~~AD~~~~d~~~~~~~~~~~~~~~---~ 407 (453)
T 3mdu_A 333 WLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQ--PIGSLAVGRRADLLVLDGNDPYLASAEGDALL---N 407 (453)
T ss_dssp HHHHHHHHHHTCSCCSCBTTBCCHHHHHHHHHHHHHHHHHTS--SCSSCCTTSBCCEEEECTTCHHHHTCCHHHHH---H
T ss_pred HHHHHHhhhccCCccccCcccCCCHHHHHHHHHHHHHHHhCC--CCCccCCCCcCCEEEEeCCCccccCCCccChH---H
Confidence 2222222211 12699999999999999999999 689999999999999998866433 111110 0
Q ss_pred CCccCCeEEeeEEEEEEECCEEEEECCeeec
Q 009282 466 TNVYEGRRVKGKVEVTIAGGRVVWENDELNV 496 (538)
Q Consensus 466 ~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~ 496 (538)
...|.+. ..+|..||++|++||++|+++.
T Consensus 408 ~~~~~~~--~~~v~~v~v~G~~v~~~g~~~~ 436 (453)
T 3mdu_A 408 RWLFAGG--DRQVRDVMVAGRWVVRDGRHAG 436 (453)
T ss_dssp HHHHHCC--GGGEEEEEETTEEEEBTTBCTT
T ss_pred HheeeCC--CCCeeEEEECCEEEEECCccCC
Confidence 1112221 2579999999999999999863
|
| >1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel, beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP: b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=285.88 Aligned_cols=352 Identities=15% Similarity=0.163 Sum_probs=206.6
Q ss_pred EEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc--cCC---CCChhhHH
Q 009282 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME--FMG---SETIDDFF 128 (538)
Q Consensus 55 ~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~--~~~---~~~~~~~~ 128 (538)
++|+|++|+++++. ++++|+|+||||++|++..+.+.+.++||++|++|+|||||+|+|+... +.. ..+++.++
T Consensus 2 ~li~~~~v~~~~~~~~~~~v~I~~g~I~~vg~~~~~~~~~~viD~~g~~v~PGlID~H~H~~~g~~~~~~~~~~~~~~~~ 81 (382)
T 1yrr_A 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLE 81 (382)
T ss_dssp EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCCEEECTTCEEEECEEEEEESEETTEESSSSTTTSSHHHHH
T ss_pred EEEEeeEEEcCCceeeCCEEEEECCEEEEEecCCCCCccceeecCCCCEEccCEEEEeecccCCcCccccccCCCHHHHH
Confidence 68999999998764 5789999999999999765444457899999999999999999998643 111 12566666
Q ss_pred HHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHH----hcccceeeeeeeee--ec-----CCh---hh-HHHHHHHH
Q 009282 129 SGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK----AKNSCMDYGFHMAI--TK-----WDE---VV-SDEMEVMV 192 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~-----~~~---~~-~~~~~~~~ 192 (538)
..++.++++||||++|+...... ...+.+....+. +.+ .+......+. .. ..+ +. .+.++ +.
T Consensus 82 ~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 159 (382)
T 1yrr_A 82 IMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLAKHPNQ-ALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVD-FL 159 (382)
T ss_dssp HHHHHHHHTTEEEEEEEEECCCHHHHHHHHHHHHHHHHHCTTS-BCCEEEECSSCCCSCC-CCCSCSCCHHHHHHHH-HH
T ss_pred HHHHHHHhCCeEEEEeecCCCCHHHHHHHHHHHHHHhhccCCc-eeEEEEeCCcCCccccCCCCHHHccCCCHHHHH-HH
Confidence 77888999999999998643322 122222222222 222 1111111100 00 000 11 33444 44
Q ss_pred HHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEE-EcC-ChhhHHHHHHHHHHcCCCCcccccccCCc-hH-H
Q 009282 193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV-HAE-NGDAVFEGQKRMIELGITGPEGHALSRPP-LL-E 268 (538)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~-H~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-~ 268 (538)
..+.+.+|.+.- .+.+.+.++++.|+++|+++++ |+. +..++... .+.|....+.-....+. .. +
T Consensus 160 -~~~~~~ik~~~~------~~~~~~~~~~~~a~~~g~~v~~gH~~~~~~~~~~~----~~~G~~~~~h~~~~~~~~~~~~ 228 (382)
T 1yrr_A 160 -CENADVITKVTL------APEMVPAEVISKLANAGIVVSAGHSNATLKEAKAG----FRAGITFATHLYNAMPYITGRE 228 (382)
T ss_dssp -HHTTTTEEEEEE------CGGGSCHHHHHHHHHTTCEEEECSCCCCHHHHHHH----HHHTCCEESSTTTTSCCBCSSC
T ss_pred -HhcCCCEEEEEE------CCCCChHHHHHHHHHCCCEEEEECCCCCHHHHHHH----HHcCCCeeEECCCCCCccccCC
Confidence 557788887521 1124455789999999999998 996 44443333 34565433211111110 00 0
Q ss_pred HHHHHHHHHHHHHcCCC-EEEEeccCHHHHHHHHHHHHcC-CcEEEeccccccccCcccccCCCcccccceeecCCCCCc
Q 009282 269 GEATTRAIRLAEFVNTP-LYVVHVMSMDAMEEIAKARKAG-QRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346 (538)
Q Consensus 269 ~~~i~~~l~~~~~~~~~-~~~~h~~~~~~~~~i~~~~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 346 (538)
...+...+ ...+.. ..+.|+..... +.++.+++.+ ..+..++.. ..... .. . ..+.+.
T Consensus 229 ~g~~~~~l---~~~~~~~~~~~h~~~~~~-~~~~~~~~~~~~~~~~~~d~--~~~~g---~~----~-~~~~~~------ 288 (382)
T 1yrr_A 229 PGLAGAIL---DEADIYCGIIADGLHVDY-ANIRNAKRLKGDKLCLVTDA--TAPAG---AN----I-EQFIFA------ 288 (382)
T ss_dssp CHHHHHHH---HCTTCEEEEECSSSSSCH-HHHHHHHHHHGGGEEEECCB--CTTTT---SC----C-SEEEET------
T ss_pred cchhhHhh---cCCcceeeecCcccccCH-HHHHHHHHcCCCcEEEECcC--hHhcC---CC----C-ceEEEC------
Confidence 00000011 000111 14667765544 6666666665 344433221 10000 00 0 011100
Q ss_pred ccHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHH
Q 009282 347 GHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECAR 425 (538)
Q Consensus 347 ~~~~~l~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~ 425 (538)
.+..+++.|+.+ ..|||... ...+...++.++...++|++++|+++|.|||+
T Consensus 289 ----~~~~~~~~Gv~~~~~Gt~~g~-----------------------~~~~~~~~~~~~~~~g~~~~~al~~aT~~~A~ 341 (382)
T 1yrr_A 289 ----GKTIYYRNGLCVDENGTLSGS-----------------------SLTMIEGVRNLVEHCGIALDEVLRMATLYPAR 341 (382)
T ss_dssp ----TEEEEECSSCEECTTCCEEEB-----------------------CCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHH
T ss_pred ----CEEEEEECCEEEeCCCcCcCC-----------------------ccCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 023456678766 33444211 01122233344433469999999999999999
Q ss_pred HcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 426 IFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 426 ~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
++|+++++|+|++||.|||||+|.|+ +|..||++|++||++
T Consensus 342 ~lg~~~~~G~i~~G~~ADlvvld~~~-------------------------~v~~v~~~G~~v~~~ 382 (382)
T 1yrr_A 342 AIGVEKRLGTLAAGKVANLTAFTPDF-------------------------KITKTIVNGNEVVTQ 382 (382)
T ss_dssp HTTCTTTSSSCCTTSBCCEEEECTTS-------------------------CEEEEEETTEEEEEC
T ss_pred HhCCCCCCCccCCCCCCCEEEECCCC-------------------------CEEEEEECCEEEEeC
Confidence 99998889999999999999999762 589999999999975
|
| >4gy7_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX; 1.49A {Canavalia ensiformis} PDB: 3la4_A* 4h9m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=317.17 Aligned_cols=366 Identities=15% Similarity=0.176 Sum_probs=213.9
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCC------------CCCCCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN------------INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~------------~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
..|++|+|++|+|+++...+||+|+||||++||+. ...++++++||++|++|+|||||+|+|+..+
T Consensus 336 ~~DLVItNA~IVD~tGi~kADI~IkDGRIaAIGkagnpD~~dgV~pdl~ig~gtEVIDA~GkiVtPGfID~HvHl~~P-- 413 (840)
T 4gy7_A 336 SLDTVITNAVIIDYTGIIKADIGIKDGLIASIGKAGNPDIMNGVFSNMIIGANTEVIAGEGLIVTAGAIDCHVHYICP-- 413 (840)
T ss_dssp SCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCSSCCTTSBCCTTCEEEECTTCEEEECEEEEEEECCCT--
T ss_pred cCCEEEeCeEEECCCCeEEeeEEEECCEEEEEeccCCcccccccccccccCCCCEEEECCCCEEccCeeeeccCCCCC--
Confidence 56899999999999988899999999999999952 2345688999999999999999999998765
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCCCCC--------CHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHH
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM 191 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (538)
+ ....++++||||+++.+..... .................+++++......... ..+.++
T Consensus 414 ~---------~~~eALasGVTTvv~gGtgp~~~~~~~~~~~~~~~~~~~l~a~~~~~vn~g~~~~~~~~~~---~~L~el 481 (840)
T 4gy7_A 414 Q---------LVYEAISSGITTLVGGGTGPAAGTRATTCTPSPTQMRLMLQSTDDLPLNFGFTGKGSSSKP---DELHEI 481 (840)
T ss_dssp H---------HHHHHHHHTEEEEEEECSSSCHHHHHSSCCCSHHHHHHHHHHTTTSSSEEEEEEECCCSSS---HHHHHH
T ss_pred C---------chHHHHHhhHHHHHhCCCceecCcccccccchHHHHHHHHhhhhcceeEEEEeCCCCcccH---HHHHHh
Confidence 1 1345688999999976432211 2233333344444445666666554433333 345555
Q ss_pred HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHc-CCCCcccccccCCchHHHH
Q 009282 192 VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIEL-GITGPEGHALSRPPLLEGE 270 (538)
Q Consensus 192 ~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 270 (538)
. ..|+..+|.+..+ ..+.+.+...++.+++++.++.+|.+.........+.+... +......|....... .
T Consensus 482 ~-~aGa~g~K~~~~~----~~t~~~i~~aL~~A~e~g~~V~ih~e~~~~~~~vee~laA~~g~~~h~~~~e~~~~~-~-- 553 (840)
T 4gy7_A 482 I-KAGAMGLKLHEDW----GSTPAAIDNCLTIAEHHDIQINIHTDTLNEAGFVEHSIAAFKGRTIHTYHSEGAGGG-H-- 553 (840)
T ss_dssp H-HHTCSEEEEETTT----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSC-S--
T ss_pred h-hceeeEEEecccc----CCCHHHHHHHHHHHHHhCCEEEEeccCcchhHHHHHHHHhhcCCcccceeccccccc-c--
Confidence 5 6799999987543 45788999999999999999999996644322222221111 111111111000000 0
Q ss_pred HHHHHHHHHHHcCCCEEEEec--cC----HH-HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCC
Q 009282 271 ATTRAIRLAEFVNTPLYVVHV--MS----MD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (538)
Q Consensus 271 ~i~~~l~~~~~~~~~~~~~h~--~~----~~-~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (538)
+..+....+....+.+. .. .. ..+.+..... .+++ ..... ....+...++.
T Consensus 554 ----A~dii~~~~~a~~l~~~t~~~~~~~~~~~~e~l~~~~~----------~~~l--~~~i~------ed~~~~~s~~~ 611 (840)
T 4gy7_A 554 ----APDIIKVCGIKNVLPSSTNPTRPLTSNTIDEHLDMLMV----------CHHL--DREIP------EDLAFAHSRIR 611 (840)
T ss_dssp ----TTTGGGGGGCTTEEEEEESTTSSCBTTHHHHHHHHHHH----------HTTC--CTTSH------HHHHHHHHHSC
T ss_pred ----chHHHHHhhcccceeeEeeccchhhhhhhhhhheeEEe----------eecc--Cccch------hhhhhccCcCC
Confidence 00000111111111111 00 00 0011111100 0111 00000 00111111111
Q ss_pred CCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHH------hhhcCCCCHHHHHH
Q 009282 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT------MVESGQISVTDYVR 417 (538)
Q Consensus 344 r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~------~~~~~~ls~~eal~ 417 (538)
+ ........+.+.|+..+++||+.+.....+.. ...+ .......... .+..+++++++||+
T Consensus 612 ~--~~~a~~~ll~dlGvi~~isSD~~p~~~~~e~~-----~~~~------~~a~~~~~~~g~~~~e~~~~~~Lsl~eAIr 678 (840)
T 4gy7_A 612 K--KTIAAEDVLNDIGAISIISSDSQAMGRVGEVI-----SRTW------QTADKMKAQTGPLKCDSSDNDNFRIRRYIA 678 (840)
T ss_dssp H--HHHHHHHHHHHTTSSCEEECCBTTTBCGGGHH-----HHHH------HHHHHHHHHHCSCTTSCSSCCHHHHHHHHH
T ss_pred c--cchhHHHHHHhCCCeEEEeccccccccccccc-----hhhh------cccccchhhcccchhhhhhcCCCCHHHHHH
Confidence 1 11122234556699999999988765443211 0000 0000000000 11345689999999
Q ss_pred HHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC-Ceeec
Q 009282 418 LTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN-DELNV 496 (538)
Q Consensus 418 ~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~-~~~~~ 496 (538)
++|+|||++||+++++|||++||.|||||||+..+ ..+++.|+++|++||-. |....
T Consensus 679 ~aTiNPAraLGLddr~GSIEpGK~ADLVLfDPa~F----------------------GvKPe~Vik~G~Iv~~~~gd~~~ 736 (840)
T 4gy7_A 679 KYTINPAIANGFSQYVGSVEVGKLADLVMWKPSFF----------------------GTKPEMVIKGGMVAWADIGDPNA 736 (840)
T ss_dssp TTTHHHHHHHTCTTTSSSSCTTSBCCEEEECGGGT----------------------TTCCSEEEETTEEEEEEECCTTS
T ss_pred HHHHHHHHHhCCCCCccccCCCCcceEEEECchHc----------------------CCCCeEEEECCEEEEcCCCCCCc
Confidence 99999999999999999999999999999996543 34789999999999853 55554
|
| >1onw_A Isoaspartyl dipeptidase; amidohydrolase, hydrolase, metalloprotease; HET: KCX; 1.65A {Escherichia coli} SCOP: b.92.1.7 c.1.9.13 PDB: 1onx_A* 1po9_A* 1poj_A* 1pok_B* 2aqo_A* 1ybq_A* 2aqv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-32 Score=273.49 Aligned_cols=355 Identities=21% Similarity=0.246 Sum_probs=208.0
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC--CCCceEEecCCCeeeccccccccccccccCCCCC--hhhHH
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSET--IDDFF 128 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~--~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~--~~~~~ 128 (538)
..++|+|++|++++...+++|+|+||||++|++.... +.+.++||++|++|+|||||+|+|+.... +... .....
T Consensus 8 ~~~~i~n~~v~~~~~~~~~~v~i~~g~I~~ig~~~~~~~~~~~~viD~~g~~v~PG~iD~H~H~~~~~-~~~~~~~~~~~ 86 (390)
T 1onw_A 8 GFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPGFIDQHVHLIGGG-GEAGPTTRTPE 86 (390)
T ss_dssp CCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSSSSCEEEECTTCEEEECEEEEEECTTCCB-CTTSGGGBCCC
T ss_pred ceEEEECcEEECCCCCccceEEEECCEEEEEecCcccCCCCCCeEEeCCCCEECcCeeEeeECccccC-ccccccccCHH
Confidence 4689999999998766678999999999999975432 23568999999999999999999985331 1100 01111
Q ss_pred HHHHHHHhCCcEEEecccCCCCC--CH---HHHHHHHHHHhcccceeeeeee-eeecCChhhHHHHHHHHHHcCCcEEEE
Q 009282 129 SGQAAALAGGTTMHIDFVIPING--SL---TAGFEAYEKKAKNSCMDYGFHM-AITKWDEVVSDEMEVMVKEKGINSFKF 202 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ik~ 202 (538)
...+.++++||||++++...... .. ....+...+.+.+.....+.+. .............. .. .....+++
T Consensus 87 ~~~~~~~~~GvTtv~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~-~~--~~~~g~~~ 163 (390)
T 1onw_A 87 VALSRLTEAGVTSVVGLLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVA-II--DRVIGVKC 163 (390)
T ss_dssp CCHHHHHHTTEEEEEECCCSCCSSCCHHHHHHHHHHHHHHTSEEEEEEECSCSSCCCSSSCHHHHHH-HC--TTEEEEEE
T ss_pred HHHHHHHHCCeeEEecCCCcccccCcHHHHHHHHHHHHhcCCceEEeccccCCCchhhhhhhcchhh-hH--HHhhccee
Confidence 23677899999999998643221 11 1222222222222111111110 00111111111111 11 11122355
Q ss_pred EeeeCCCccCCHHHHHHHHHHHHhcCC------eEEEEc-CChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 203 FMAYKGSFMINDELLIEGFKRCKSLGA------LAMVHA-ENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~A~~~g~------~v~~H~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
.+.+...+..+.++++++++.++..+. .+.+|. ++....+... .+.+.|....
T Consensus 164 ~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~g~~~~h~~~~~~~~~~~~-~~~~~g~~~v------------------- 223 (390)
T 1onw_A 164 AISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALQPIY-DLLENCDVPI------------------- 223 (390)
T ss_dssp EESSTTSCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEEECSCTTTTHHHH-HHHHTCCCCG-------------------
T ss_pred eecCCCCCCCCHHHHHHHHHHHhhhhhhhccCceEEEEeCCCHHHHHHHH-HHHhccCCce-------------------
Confidence 555555556788999998888775543 367787 3333332222 2222222110
Q ss_pred HHHHHHcCCCEEEEeccCHHHH--HHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHH
Q 009282 276 IRLAEFVNTPLYVVHVMSMDAM--EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ 353 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~~~~~~--~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~ 353 (538)
..++..|+...... +.++.+++.+...+.+.. .|+ ....+.++
T Consensus 224 --------~~l~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~---~~~~~~l~ 268 (390)
T 1onw_A 224 --------SKLLPTHVNRNVPLFEQALEFARKGGTIDITSSI------------------------DEP---VAPAEGIA 268 (390)
T ss_dssp --------GGEEEECGGGSHHHHHHHHHHHHTTCCEEEETTC------------------------CSS---SCHHHHHH
T ss_pred --------EEeeccccccCHHHHHHHHHHHhcCCcccccccc------------------------CCC---CcCHHHHH
Confidence 01123565322211 344445544432222111 111 13457789
Q ss_pred HHHhcCCc---eEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 354 AALATGIL---QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 354 ~~l~~Gv~---~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
.+++.|+. ++++||+.+..+.... .....+.|..+....+.... .++...++|++++++++|.|||++||+
T Consensus 269 ~~~~~g~~~d~i~l~TD~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~t~npA~~~gl- 342 (390)
T 1onw_A 269 RAVQAGIPLARVTLSSDGNGSQPFFDD----EGNLTHIGVAGFETLLETVQ-VLVKDYDFSISDALRPLTSSVAGFLNL- 342 (390)
T ss_dssp HHHHTTCCGGGEEEECCBTCC-----------------CCCCSHHHHHHHH-HHHHHHCCCHHHHHGGGTHHHHHHTTC-
T ss_pred HHHHcCCCccceEEEccCCCCCcccCC----ccccccccCCCHHHHHHHHH-HHHHHcCCCHHHHHHHHhHHHHHHhCC-
Confidence 99999984 7999998654221100 01112345555444444433 556556799999999999999999999
Q ss_pred CCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeecc
Q 009282 431 PRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVV 497 (538)
Q Consensus 431 ~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~ 497 (538)
+++|+|++|+.|||||+|.+ . .|..||++|++|+++|+++..
T Consensus 343 ~~~G~i~~G~~ADlvv~d~~-~------------------------~v~~v~~~G~~v~~~g~~~~~ 384 (390)
T 1onw_A 343 TGKGEILPGNDADLLVMTPE-L------------------------RIEQVYARGKLMVKDGKACVK 384 (390)
T ss_dssp TTCSSCCTTSBCCEEEECTT-C------------------------CEEEEEETTEEEEETTEESSC
T ss_pred CCCcccCCCCcCCEEEEcCC-C------------------------cEEEEEECCEEEEECCeEccc
Confidence 56899999999999999965 1 478999999999999998853
|
| >3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=287.31 Aligned_cols=329 Identities=17% Similarity=0.185 Sum_probs=213.3
Q ss_pred cEEEECcEEEcCCCc--eeeeEEEeCCEEEEecCCCCC-----CCCceEEecCCCeeeccccccccccccc--------c
Q 009282 54 KILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINV-----GDDVKVLDATGKFVMPGGIDPHTHLAME--------F 118 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~--~~~~V~I~~grI~~Vg~~~~~-----~~~~~vID~~G~~v~PGlID~H~H~~~~--------~ 118 (538)
+++|+|++|+|+++. ...+|+|+||||++||+..+. ++++++||++|++|+|||||+|+|+... +
T Consensus 37 ~~li~ng~I~t~~~~~~~~~~v~v~~g~I~~vg~~~~~~~~~~~~~~~viD~~G~~v~PGfiD~H~H~~~~g~~~~~~dl 116 (534)
T 3icj_A 37 MKALINGTIYTSFSPVKKVSGLVISNERVLYAGDSSTALRIAELAGGEIIDLKGKFVMPAFFDSHLHLDELGMSLEMVDL 116 (534)
T ss_dssp EEEEESSEEEEEETTEEEESEEEEETTEEEEEECHHHHHHHHHHHTCEEEECTTCEEEECEEEEEECHHHHHHHHHSEEC
T ss_pred CEEEECCEEECCCCCCceeeEEEEECCEEEEEcChHHHHhhccCCCCEEEECCCCEEecCEeehhhhhhhhhhhcCccCC
Confidence 489999999998765 478999999999999986432 3467899999999999999999996542 0
Q ss_pred C------------------------------------------------------------------CC-----------
Q 009282 119 M------------------------------------------------------------------GS----------- 121 (538)
Q Consensus 119 ~------------------------------------------------------------------~~----------- 121 (538)
. |.
T Consensus 117 ~~~~s~~e~~~~l~~~~~~wi~g~G~~~~~~~~~pt~~~LD~~~~Pv~l~~~~~H~~~~Ns~AL~~~gi~~t~~p~G~tG 196 (534)
T 3icj_A 117 RGVKSMEELVERVKKGRGRIIFGFGWDQDELGRWPTREDLDVIDRPVFLYRRCFHVAVMNSKMIDLLNLKPSKDFDESTG 196 (534)
T ss_dssp TTCCSHHHHHHHHHTCCSSSEEEEEECHHHHSSCCCHHHHTTSSSCEEEEETTSSEEEECHHHHHHHCCCCCTTEETTTT
T ss_pred CCCCCHHHHHHHHHHHHhhCEEEcccCHHHhcCCCCHHHHhhCCCeEEEEecCCcHhHHhHHHHHHcCCCCCCCCCCCCc
Confidence 0 00
Q ss_pred -----------------C-ChhhH----HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeec
Q 009282 122 -----------------E-TIDDF----FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (538)
Q Consensus 122 -----------------~-~~~~~----~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (538)
. +.+.. ....+.+.+.|||++.|+... ....+.++...+.+ ...+.+..+...
T Consensus 197 ~l~e~A~~~v~~~~p~~~l~~~~~~~~l~~a~~~~~~~GiTsv~d~~~~--~~~~~~~~~l~~~g-~l~~rv~~~~~~-- 271 (534)
T 3icj_A 197 IVRERALEESRKIINEKILTVKDYKHYIESAQEHLLSLGVHSVGFMSVG--EKALKALFELEREG-RLKMNVFAYLSP-- 271 (534)
T ss_dssp EEEHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEC--HHHHHHHHHHHHTT-CCCSEEEEEECG--
T ss_pred eeeHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHHHHhCC-CCcEEEEEecCH--
Confidence 0 11111 223445678999999998643 12233333333322 233333322211
Q ss_pred CChhhHHHHHHHHH------HcCCcEEEEEeee-------------------CCCccCCHHHHHHHHHHHHhcCCeEEEE
Q 009282 180 WDEVVSDEMEVMVK------EKGINSFKFFMAY-------------------KGSFMINDELLIEGFKRCKSLGALAMVH 234 (538)
Q Consensus 180 ~~~~~~~~~~~~~~------~~g~~~ik~~~~~-------------------~~~~~~~~~~l~~~~~~A~~~g~~v~~H 234 (538)
+..+++.+... .....++|+|.+. .|.+.++.++++++++.|+++|+++.+|
T Consensus 272 ---~~~~~~~~~~~~~~~~~~~~~~gvK~~~DG~~~~~tA~l~~pY~d~~~~~g~~~~~~e~l~~~v~~A~~~G~~v~~H 348 (534)
T 3icj_A 272 ---ELLDKLEELNLGKFEGRRLRIWGVKLFVDGSLGARTALLSEPYTDNPTTSGELVMNKDEIVEVIERAKPLGLDVAVH 348 (534)
T ss_dssp ---GGHHHHHHHTCCSEECSSEEEEEEEEESCCCTTTTCSCCSSCBTTBTTCCCCCSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred ---HHHHHHHHhccccCCCCcEEEEeEEEEEeCCCCccchhhcCCccCCCCCCCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 22333332210 0124567888663 2334578999999999999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEec
Q 009282 235 AENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEP 314 (538)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~ 314 (538)
+.++..++..++...+. +.+..+.|+...++ +.++++++.|+.++.+|
T Consensus 349 a~gd~ai~~~l~a~~~~-------------------------------~~r~~ieH~~~~~~-e~i~~la~~gv~~~~~P 396 (534)
T 3icj_A 349 AIGDKAVDVALDAFEEA-------------------------------EFSGRIEHASLVRD-DQLERIKELKVRISAQP 396 (534)
T ss_dssp ECSHHHHHHHHHHHHHH-------------------------------TCCCEEEECCBCCH-HHHHHHHHHTCEEEECT
T ss_pred EcChHHHHHHHHHHHhc-------------------------------cCCCEEEECCCCCH-HHHHHHHHcCCeEEEcc
Confidence 98876665555443221 25668999998887 89999999999888777
Q ss_pred cccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchh
Q 009282 315 VVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIE 394 (538)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~ 394 (538)
..... +. ... ..+.. ...... .+++.++++ +++++|||.+..+.+ ||..
T Consensus 397 ~~~~~--~~-~~~-~~lg~-~r~~~~---------~p~~~l~~~-v~valGSD~p~~~~~-------p~~~--------- 445 (534)
T 3icj_A 397 HFIVS--DW-WIV-NRVGE-ERAKWA---------YRLKTLSSI-TKLGFSTDSPIEPAD-------PWVS--------- 445 (534)
T ss_dssp THHHH--CT-THH-HHHHH-HHGGGB---------TCHHHHHHH-SCEEECCTTTTSCCC-------HHHH---------
T ss_pred ccccc--hh-HHH-HhhCH-HHHhcc---------HHHHHHHHh-CCEEeecCCCCCCCC-------HHHH---------
Confidence 64221 10 000 00000 000001 227889999 999999997533211 2211
Q ss_pred hhHHHHHH--HhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeec
Q 009282 395 ERMHLVWD--TMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEIT 456 (538)
Q Consensus 395 ~~~~~~~~--~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~ 456 (538)
+..... .+....++|++|||+++|.|+|+++|++ ++|+|++||.|||||+|.|++..++
T Consensus 446 --~~~av~r~~~~~~~~ls~~eaL~~~T~~~A~~lg~e-~~GsLe~Gk~ADlvvld~dpl~~~~ 506 (534)
T 3icj_A 446 --IDAAVNRYVVDPGERVSREEALHLYTHGSAQVTLAE-DLGKLERGFRAEYIILDRDPLKEMK 506 (534)
T ss_dssp --HHHHHHCCSSCGGGCCCHHHHHHHTTHHHHHHTTCT-TCSCCSTTSBCCEEEESSCTTC---
T ss_pred --HHHHHhccccCcccCCCHHHHHHHHHHHHHHHhCCC-CCeEECCCCCcCEEEECCChhhccc
Confidence 111111 1223456999999999999999999998 9999999999999999999876553
|
| >2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural genomics, protein structure initiative; 1.78A {Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-33 Score=283.71 Aligned_cols=342 Identities=14% Similarity=0.056 Sum_probs=203.9
Q ss_pred cccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCeeeccccccccccccccC-------
Q 009282 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAMEFM------- 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~~~------- 119 (538)
+++++|+|++|++++. ..+++|+|+||||++||+.... +++.++||++ ++|+|||||+|+|+.....
T Consensus 36 ~~~~li~n~~v~~~~~~~~~~~~V~I~~g~I~~vg~~~~~~~~~~~~~viD~~-~~v~PGlID~H~H~~~~~~~g~~~~~ 114 (420)
T 2imr_A 36 HTPRLLTCDVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHAAEERAG-AVIAPPPVNAHTHLDMSAYEFQALPY 114 (420)
T ss_dssp CCEEEEEESEEECC---EESSEEEEEETTEEEEEECHHHHHHHCTTCEEEECC-SEESSCCCEEEEESSCCHHHHHHCHH
T ss_pred cccEEEECCEEEeCCCCeeeccEEEEECCEEEEecCcccccccCCCCeeecCC-eEECCCCEecCcCcchhhhhhccCCH
Confidence 4578999999999874 3578999999999999975321 1357899999 9999999999999975310
Q ss_pred -CC-----------CChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHH-HHHHhcccceeeeeeeeeecC-ChhhH
Q 009282 120 -GS-----------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEA-YEKKAKNSCMDYGFHMAITKW-DEVVS 185 (538)
Q Consensus 120 -~~-----------~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~ 185 (538)
.. .++.......+.++++||||++|+... ...++. ..+.+.+....+++.. .... ..+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GvTtv~d~~~~-----~~~~~~~~~~~g~r~~~~~~~~~-~~~~~~~~~~ 188 (420)
T 2imr_A 115 FQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWA-----PEVMDALLAREDLSGTLYFEVLN-PFPDKADEVF 188 (420)
T ss_dssp HHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEECS-----HHHHHHHHTCTTCCEEEEEEECB-CCGGGHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhcCcEEEEEccCC-----HHHHHHHHHhcCcEEEEEeeecC-CCchhhHHHH
Confidence 00 001122345677899999999998632 122221 1112222222222211 1100 01122
Q ss_pred HHHHHHHHH---cCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCC-------
Q 009282 186 DEMEVMVKE---KGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGIT------- 254 (538)
Q Consensus 186 ~~~~~~~~~---~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~------- 254 (538)
.+..++.+. .+...++++..+++....+.+.++++++.|+++|+++.+|+.+. ..+....+ ..|..
T Consensus 189 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~a~~~g~~v~~H~~e~~~~~~~~~~---~~g~~~~~~~~~ 265 (420)
T 2imr_A 189 AAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMFRT---GGGPLWDNRMPA 265 (420)
T ss_dssp HHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHHHHHHH---SCSTTGGGSCGG
T ss_pred HHHHHHHHHHhcccCCceEEEecCCcCCCcCHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHH---hhcccccccccc
Confidence 333333322 23456788877777777899999999999999999999999543 33333221 11111
Q ss_pred -Cccccc--ccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCc
Q 009282 255 -GPEGHA--LSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDF 331 (538)
Q Consensus 255 -~~~~~~--~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 331 (538)
.+..+. ..++.......++.+ +.....+.+..+.|+...+. +.++.+++.|+.+..||....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~i~H~~~l~~-~~i~~l~~~g~~~~~~p~~~~------------- 330 (420)
T 2imr_A 266 LYPHTLAEVIGREPGPDLTPVRYL-DELGVLAARPTLVHMVNVTP-DDIARVARAGCAVVTCPRSNH------------- 330 (420)
T ss_dssp GSCSSHHHHHTSCCCTTCCHHHHH-HHHTCGGGCCEEEECCSCCH-HHHHHHHHHTCCEEECHHHHH-------------
T ss_pred chhhhhhhhccccccCCCCHHHHH-HHcCCCCCCeEEEecCcCCH-HHHHHHHHcCCeEEECHHHHH-------------
Confidence 000000 000000000011111 11222344556788876655 778888888987776654311
Q ss_pred ccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh-cCCC
Q 009282 332 VTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SGQI 410 (538)
Q Consensus 332 ~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~-~~~l 410 (538)
..+. ..|+ ++.++++|+++++|||+.+.+.... +...++.++. ..++
T Consensus 331 ~~~~---~~~~---------l~~~~~~Gv~~~lgtD~~~~~~~~~--------------------~~~~~~~~~~~~~~l 378 (420)
T 2imr_A 331 HLEC---GTFD---------WPAFAAAGVEVALGTDSVASGETLN--------------------VREEVTFARQLYPGL 378 (420)
T ss_dssp HTTC---CCCC---------HHHHHHTTCCEEECCCCHHHHSCSC--------------------THHHHHHHHHHCTTS
T ss_pred Hhcc---CCCC---------HHHHHHCCCeEEEECCCCccCCCCC--------------------HHHHHHHHHhcCCCC
Confidence 1111 1233 6789999999999999853211100 0111112222 2579
Q ss_pred CHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCC
Q 009282 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNS 451 (538)
Q Consensus 411 s~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~ 451 (538)
|++++|+++|.|||+++|+++++|+|++||.||| |+|+++
T Consensus 379 s~~~al~~aT~n~A~~lgl~~~~GsL~~Gk~ADl-vvd~~~ 418 (420)
T 2imr_A 379 DPRVLVRAAVKGGQRVVGGRTPFLRRGETWQEGF-RWELSR 418 (420)
T ss_dssp CHHHHHHHHHHHHHHHHC--CCCCSTTSBCCGGG-BGGGCC
T ss_pred CHHHHHHHHHHHHHHHhCCCCCceeeCCCCccCE-EEECCC
Confidence 9999999999999999999878999999999999 777663
|
| >2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD; 1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A* 1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A* 3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=264.40 Aligned_cols=330 Identities=14% Similarity=0.132 Sum_probs=245.0
Q ss_pred CCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccc--eeeeee
Q 009282 99 TGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSC--MDYGFH 174 (538)
Q Consensus 99 ~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~--~~~~~~ 174 (538)
++++|+|||||+|+|+..+ ......++++++||||+++|....+. ...+.++.+.+... ... +++.++
T Consensus 4 ~~~~v~PG~ID~HvH~~~g--------~~~~e~~aa~~gGvTtvv~mpnt~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (347)
T 2z26_A 4 SQVLKIRRPDDWHLHLRDG--------DMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPL 75 (347)
T ss_dssp CCEEEEECCCEEEECCCSH--------HHHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHTSCTTCCCEEE
T ss_pred CCeEECCCcceeeecCCCC--------CchhhHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHHhcccCCcccEEEE
Confidence 5689999999999998652 11223478899999999999743332 33444544444332 223 333333
Q ss_pred eeeecCChhhHHHHHHHHHHcCC-cEEEEEeeeC----CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHH
Q 009282 175 MAITKWDEVVSDEMEVMVKEKGI-NSFKFFMAYK----GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMI 249 (538)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~-~~ik~~~~~~----~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~ 249 (538)
.......+...+++..+. +.|+ .++|+|+.+. +....+.+.++++++.+++.|.++.+|+++....
T Consensus 76 ~~~~~~~~~~~~ei~~l~-~~G~~~g~K~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~vH~ed~~~~-------- 146 (347)
T 2z26_A 76 MTCYLTDSLDPNELERGF-NEGVFTAAKLYPANATANSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHAD-------- 146 (347)
T ss_dssp EEEECCTTCCHHHHHHHH-HTTSEEEEEECCCCTTCCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCTT--------
T ss_pred EEEEeCCCCCHHHHHHHH-HCCCeEEEEEeecCCcCCCCCccCCHHHHHHHHHHHHHhCCEEEEEecCCccc--------
Confidence 333222222367788777 6897 7999998864 2334578999999999999999999999865310
Q ss_pred HcCCCCcccccccCCchHHHHHHHHHH--HHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCccccc
Q 009282 250 ELGITGPEGHALSRPPLLEGEATTRAI--RLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (538)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~i~~~l--~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~ 327 (538)
+ .+...|...+.+.+ .+++..+.++|+.|+++...++.++. .+..|+++.++|++.++++.+.
T Consensus 147 ---~---------~~~~~E~~~~~~~i~~~la~~~~~~~hi~Hvst~~~~~~i~~---ak~~Vt~e~~ph~L~l~~~~~~ 211 (347)
T 2z26_A 147 ---I---------DIFDREARFIESVMEPLRQRLTALKVVFEHITTKDAADYVRD---GNERLAATITPQHLMFNRNHML 211 (347)
T ss_dssp ---S---------CGGGHHHHHHHHTHHHHHHHSTTCCEEECSCCSHHHHHHHHT---SCTTEEEEECHHHHHCCHHHHH
T ss_pred ---c---------CHHHHHHHHHHHHHHHHHHhhcCCcEEEEECCcHHHHHHHHH---hCCCceEeecchHheecHHHhc
Confidence 0 01112445566666 57788899999999999766555544 3468999999999999988775
Q ss_pred CCCcccccceeecCCCCCcccHHHHHHHHhcCCce-EEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh
Q 009282 328 HSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ-LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406 (538)
Q Consensus 328 ~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~-~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 406 (538)
... .+..++++||+|...+++.+++++..|... +++|||.|+....+.. ++. +.|+.+++..++.++. .+
T Consensus 212 ~~~--~~~~~k~~PPLR~~~d~~aL~~~l~~G~id~~i~SDhaP~~~~~K~~---~~g--~~Gi~~~e~~l~l~~~-~~- 282 (347)
T 2z26_A 212 VGG--VRPHLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKES---SCG--CAGCFNAPTALGSYAT-VF- 282 (347)
T ss_dssp TTS--BCGGGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHSS---SSB--CCCCCCTTTHHHHHHH-HH-
T ss_pred CcC--CCccEEEeCCCCCHHHHHHHHHHHhcCCCCeEEecCCCCCCHHHhcC---CCC--CCCcCcHHHHHHHHHH-Hh-
Confidence 322 347889999999999999999999999998 8999999998876643 222 4777787888888874 44
Q ss_pred cCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCcc-CCeEEeeEEE
Q 009282 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVY-EGRRVKGKVE 479 (538)
Q Consensus 407 ~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~ 479 (538)
.+++|++++++..|.|||++||+.+++|+| +|+ +..+.++.+.+.++..|+|| +|+.+.++|.
T Consensus 283 ~~~~sl~~~v~~~s~nPAki~gl~~~kG~i--------~l~--~~~~~v~~~~~~s~~~~sPf~~G~~l~g~v~ 346 (347)
T 2z26_A 283 EEMNALQHFEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAESIALTDDTLVPFLAGETVRWSVK 346 (347)
T ss_dssp HHTTCGGGHHHHHHTHHHHHHTCCCCCCEE--------EEE--CCCEECCSCEECSSSEECCTTTTCEESCEEC
T ss_pred hcCCCHHHHHHHHhHhHHHHhCCCCCCCeE--------EEE--cceEEEchhhccccCCcccccCCcEEEeEEe
Confidence 356899999999999999999996567875 677 66799998889999999999 7998777764
|
| >3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=262.99 Aligned_cols=352 Identities=16% Similarity=0.141 Sum_probs=194.8
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCEEEEecCCCCC-CCCceEEecCCCeeeccccccccccccccCCC-C----Ch
Q 009282 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS-E----TI 124 (538)
Q Consensus 54 ~~~i~n~~vv~~~~---~~~~~V~I~~grI~~Vg~~~~~-~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~-~----~~ 124 (538)
.++|+|++|+|+.+ .++++|+|+||||++||+..+. ++++++||++|++|+|||||+|+|+....... . ..
T Consensus 3 ~~aI~narviD~~~g~~i~~~~V~I~dG~I~~Ig~~~~~~~~~~~vID~~G~~v~PG~ID~H~H~~~~~~~~~~~~~~~~ 82 (403)
T 3mtw_A 3 IKAVSAARLLDVASGKYVDNPLVIVTDGRITSIGKKGDAVPAGATAVDLPGVTLLPGLIDMHVHLDSLAEVGGYNSLEYS 82 (403)
T ss_dssp EEEEEEEEEEETTTTEEEESEEEEEETTEEEEEEETTCCCCTTCEEEEEEEEEEEECEEEEEECTTCCTTCCGGGGGGSC
T ss_pred cEEEEceEEEECCCCcEecCcEEEEECCEEEEEeCCCCCCCCCCEEEECCCCEEEeChheeeeCCccccccCcccccccc
Confidence 36899999999864 3689999999999999986543 56789999999999999999999987651110 0 01
Q ss_pred hhHH-----HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcc-cceee--eeeee-----------------eec
Q 009282 125 DDFF-----SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-SCMDY--GFHMA-----------------ITK 179 (538)
Q Consensus 125 ~~~~-----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~-----------------~~~ 179 (538)
.... ......+..|+|+..+....... ............. ..... +.... ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (403)
T 3mtw_A 83 DRFWSVVQTANAKKTLEAGFTTVRNVGAADYD--DVGLREAIDAGYVPGPRIVTAAISFGATGGHCDSTFFPPSMDQKNP 160 (403)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEECCCSTTH--HHHHHHHHHTTSSCCCEEEECCSCEESTTSTTSCCSSCGGGCCCCT
T ss_pred HHHHhhhhhhhhhhccccccceeecccccccc--chhhhhhhhccccccccccccccccccccccccccccccccccccc
Confidence 1111 11234567899999877543321 1111111111111 00000 00000 000
Q ss_pred CC----hhhHHHHHHHHHHcCCcEEEEEeee--------CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009282 180 WD----EVVSDEMEVMVKEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (538)
Q Consensus 180 ~~----~~~~~~~~~~~~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~ 247 (538)
.. .+......... ..+....+..... ........+.+.++++.|++.+.++..|...........
T Consensus 161 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 237 (403)
T 3mtw_A 161 FNSDSPDEARKAVRTLK-KYGAQVIKICATGGVFSRGNEPGQQQLTYEEMKAVVDEAHMAGIKVAAHAHGASGIREAV-- 237 (403)
T ss_dssp TCCCSHHHHHHHHHHHH-HTTCSEEEEECBCCSSSSSCCTTCBCSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHH--
T ss_pred cccchhHHHhhhhHhhh-hhcchhhhhhhccccccccccccccccCHHHHHHHHHHHHHcCCeEEEEeccchhHHHHH--
Confidence 00 11122222222 4555555544322 123445688999999999999999999998765433222
Q ss_pred HHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCccccc
Q 009282 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLW 327 (538)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~ 327 (538)
..+....... ..... ........ . .....+...... .........+.........
T Consensus 238 --~~~~~~~~~~---~~~~~--~~~~~~~~---~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------- 292 (403)
T 3mtw_A 238 --RAGVDTIEHA---SLVDD--EGIKLAVQ---K---GAYFSMDIYNTD-YTQAEGKKNGVLEDNLRKD----------- 292 (403)
T ss_dssp --HTTCSEEEEC---TTCCH--HHHHHHHH---H---TCEEECCCSTHH-HHHHHHHHHTCCHHHHHHH-----------
T ss_pred --Hhcccccccc---ccccc--chhhhhcc---c---cceeeeeeccch-hhhhhhhccccchhhcccc-----------
Confidence 2232211000 00000 00000000 0 011111111111 1111122222110000000
Q ss_pred CCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhc
Q 009282 328 HSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVES 407 (538)
Q Consensus 328 ~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~ 407 (538)
. .............++.|+.+.+|||........ +...+..+++
T Consensus 293 --------~------~~~~~~~~~~~~~~~~g~~~~~gt~~~~~~~~~---------------------~~~~~~~~~~- 336 (403)
T 3mtw_A 293 --------R------DIGELQRENFRKALKAGVKMVYGTDAGIYPHGD---------------------NAKQFAVMVR- 336 (403)
T ss_dssp --------H------HHHHHHHHHHHHHHHHTCEEECCCCBTTBCTTC---------------------GGGHHHHHHH-
T ss_pred --------c------cccccccchhhHHHhcCCeEeeccCCcccccch---------------------HHHHHHHHHH-
Confidence 0 000011234567888999999999965432210 0111212334
Q ss_pred CCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEE
Q 009282 408 GQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRV 487 (538)
Q Consensus 408 ~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~ 487 (538)
.|+|++|||+++|.|||++||+++++|+|++||.|||||||.||+.++.. ..+|.+||++||+
T Consensus 337 ~gls~~eal~~~T~npA~~lgl~~~~GsI~~G~~ADlvvld~dPl~di~~-----------------~~~v~~Vi~~G~v 399 (403)
T 3mtw_A 337 YGATPLQAIQSATLTAAEALGRSKDVGQVAVGRYGDMIAVAGDPLADVTT-----------------LEKPVFVMKGGAV 399 (403)
T ss_dssp TTCCHHHHHHHTTHHHHHHHTCTTTSSSCCTTSBCCEEEESSCTTTCGGG-----------------GGSCSEEEETTEE
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCCCceeeCCCCcceEEEECCChhHhHhh-----------------hcCcCEEEECCEE
Confidence 45999999999999999999998899999999999999999887644321 3468999999996
Q ss_pred E
Q 009282 488 V 488 (538)
Q Consensus 488 V 488 (538)
|
T Consensus 400 v 400 (403)
T 3mtw_A 400 V 400 (403)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >4ep8_C Urease subunit alpha; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1ef2_A* 4epb_C* 4epd_C* 4epe_C* 1ejx_C* 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1a5k_C 1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1a5m_C 1a5n_C 1ejr_C* 1a5l_C 1a5o_C 1fwa_C* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-33 Score=295.19 Aligned_cols=379 Identities=15% Similarity=0.127 Sum_probs=212.5
Q ss_pred CcccEEEECcEEEcCCCceeeeEEEeCCEEEEecCC----------CCCCCCceEEecCCCeeeccccccccccccccCC
Q 009282 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPN----------INVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMG 120 (538)
Q Consensus 51 ~~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~----------~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~ 120 (538)
.+.|++|+|++|+|+++..++||+|+||||++||+. ...++++++||++|++|+|||||+|+|+..+ +
T Consensus 63 ~~~DlvI~Na~Ivd~~Gi~kaDIlIkDGrIaaIG~ag~pd~~d~vdl~~~~g~eVIDA~GkiV~PG~ID~HvH~~~~--~ 140 (566)
T 4ep8_C 63 DCVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGGIDTHIHWICP--Q 140 (566)
T ss_dssp GSCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECEEEEEEECSCT--T
T ss_pred CCCCEEEECcEEECCCCeEEeEEEEECCEEEEeecCCCcccccccccccCCCCEEEECCCCEEEcCEEEecccccCC--C
Confidence 367999999999999988899999999999999963 2235689999999999999999999999876 2
Q ss_pred CCChhhHHHHHHHHHhCCcEEEecccCCC--------CCCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHHHHHHHH
Q 009282 121 SETIDDFFSGQAAALAGGTTMHIDFVIPI--------NGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMV 192 (538)
Q Consensus 121 ~~~~~~~~~~~~~~l~~GvTt~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (538)
. .......+.++........ ...................++++++......... ....+.
T Consensus 141 ~---------~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~ 208 (566)
T 4ep8_C 141 Q---------AEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNVSQPD---ALREQV 208 (566)
T ss_dssp H---------HHHHHHHTEEEEEEECSSSSHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCCSCHH---HHHHHH
T ss_pred c---------cchhhhhhHHHHhhCceEEEEecCCCCCchHHHHHHHHHHhccccceeeeeecccccccch---hhHHHh
Confidence 1 1123344555554322111 1123444445555555667777776655544332 233333
Q ss_pred HHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHH
Q 009282 193 KEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272 (538)
Q Consensus 193 ~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i 272 (538)
..+...++.+..+ ......+......+...+.....|.................+......+....+.......+
T Consensus 209 -~a~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (566)
T 4ep8_C 209 -AAGVIGLKIHEDW----GATPAAIDCALTVADEMDIQVALHSDTLNESGFVEDTLAAIGGRTIHTFHTEGAGGGHAPDI 283 (566)
T ss_dssp -HHTCSEEEEEGGG----CCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHHHHTTCCEEETTTTSTTSSSTTTG
T ss_pred -hhccccccccccc----cccchhhhhHhHHHHHhcchhhhhhhhHHHHHHHHhhHhhccCccccccccccchhHHHHHH
Confidence 5577777766543 33566777778888888999999986543322222222222222111111111111111111
Q ss_pred HHHHHHHHHcCCCEEEEeccCHHHH-HHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHH
Q 009282 273 TRAIRLAEFVNTPLYVVHVMSMDAM-EEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKA 351 (538)
Q Consensus 273 ~~~l~~~~~~~~~~~~~h~~~~~~~-~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 351 (538)
.+....+.....+.+..|....... +.+... ...|++......... ..+ +.. .......
T Consensus 284 ~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~----------~~~h~l~~~~~~~~~-------~~~--~~~-~~~~~~~ 343 (566)
T 4ep8_C 284 ITACAHPNILPSSTNPTLPYTLNTIDEHLDML----------MVCHHLDPDIAEDVA-------FAE--SRI-RRETIAA 343 (566)
T ss_dssp GGGGGCTTEEEEECSTTSSCBTTHHHHHHHHH----------HHHHTCCTTCHHHHH-------HHH--HHC-CHHHHHH
T ss_pred HHHHHHHhhcCCceeehhHHHHHHhhcccceE----------EEeecccCChhhHHh-------hcc--CCC-cccchHH
Confidence 1111111110000011111111111 111111 111333222211100 000 000 0112233
Q ss_pred HHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCC
Q 009282 352 LQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYP 431 (538)
Q Consensus 352 l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~ 431 (538)
...+++.|....+++|+.+.....+.. ...+.+.......+..+....+..++++++++|+++|+|||++||+++
T Consensus 344 ~~~l~~~G~~~~i~sD~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~gls~~eal~~aTiNPAralGL~d 418 (566)
T 4ep8_C 344 EDVLHDLGAFSLTSSDSQAMGRVGEVI-----LRTWQVAHRMKVQRGALAEETGDNDNFRVKRYIAKYTINPALTHGIAH 418 (566)
T ss_dssp HHHHHHHTSSCEECCCTTSSSCTTCHH-----HHHHHHHHHHHHHHCSCTTCCSSSCHHHHHHHHGGGTHHHHHHTTCTT
T ss_pred HHHHHhCCCcceEeecccccccccccc-----cccCCCCchHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 456778899999999998776543211 001100000000000011112245679999999999999999999999
Q ss_pred CCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC-Ceee
Q 009282 432 RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN-DELN 495 (538)
Q Consensus 432 ~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~-~~~~ 495 (538)
++|||++||+|||||||++.+ ..++.+|+++|++||-. |...
T Consensus 419 ~iGSIevGK~ADLVL~Dp~~f----------------------~vkP~~v~~~G~iv~a~~gd~n 461 (566)
T 4ep8_C 419 EVGSIEVGKLADLVVWSPAFF----------------------GVKPATVIKGGMIAIAPMGDIN 461 (566)
T ss_dssp TSSSSCTTSBCCEEEECGGGT----------------------TTSCSEEEETTEEEEEEECCTT
T ss_pred CCcCCCCCCCCCEEEECcccc----------------------CCCeeEEeeCCEEEEcccCCcc
Confidence 999999999999999998754 23688999999999953 4433
|
| >3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=256.72 Aligned_cols=354 Identities=16% Similarity=0.184 Sum_probs=189.6
Q ss_pred cccEEEECcEEEcCCC---ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCC---CChh
Q 009282 52 SSKILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS---ETID 125 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~---~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~---~~~~ 125 (538)
|.+++|+|++|+|+++ .++++|+|+||||++||+....++++++||++|++|+|||||+|+|+....... ....
T Consensus 3 M~~lli~ng~i~d~~~~~~~~~~dV~I~~G~I~~Ig~~~~~~~~~~vID~~G~~v~PGfID~H~H~~~~~~~~~~~~~~~ 82 (426)
T 3mkv_A 3 LTTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPGLIDLHVHVVAIEFNLPRVATLP 82 (426)
T ss_dssp CCEEEEEEEEECCTTSSSCEEEEEEEEETTEEEEEESSCCCCSSCEEEECTTCEEEECEEEEEECTTCCSSCHHHHTTSC
T ss_pred cCcEEEECeEEEeCCCCcEecCcEEEEECCEEEEecCCCCCCCCCEEEECCCCEEEeChhhhhhCcccccCCcccccccc
Confidence 5679999999999875 367899999999999999877777889999999999999999999987651110 0111
Q ss_pred hHH------HHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee------------------------
Q 009282 126 DFF------SGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM------------------------ 175 (538)
Q Consensus 126 ~~~------~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 175 (538)
... .........++|+........ . ........+...........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (426)
T 3mkv_A 83 NVLVTLRAVPIMRAMLRRGFTTVRDAGGAG----Y-PFKQAVESGLVEGPRLFVSGRALSQTGGHADPRARSDYMPPDSP 157 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEECSSCC----H-HHHHHHHTTSSCCCEEEECCSEEECTTSTTCCCCCSSBCCCSSS
T ss_pred hhHHHHHHHhhhhhhhcccccccccccccc----h-hhhhHhhccceeeceeccccccccccccccchhhhhhccccccc
Confidence 111 112334567777776543211 1 11111111111000000000
Q ss_pred -----------eeecCChhhHHHHHHHHHHcCCcEEEEEeee--------CCCccCCHHHHHHHHHHHHhcCCeEEEEcC
Q 009282 176 -----------AITKWDEVVSDEMEVMVKEKGINSFKFFMAY--------KGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (538)
Q Consensus 176 -----------~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~--------~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 236 (538)
.......+......... ..+.......... ..............+..+...+.....+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (426)
T 3mkv_A 158 CGCCVRVGALGRVADGVDEVRRAVREEL-QMGADQIKIMASGGVASPTDPVGVFGYSEDEIRAIVAEAQGRGTYVLAHAY 236 (426)
T ss_dssp CSSBCCTTCSEEECCSHHHHHHHHHHHH-HHTCSSEEEECBCCSSCSSCCTTSBCSCHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred cchhhhhccccccccCHHHHHHHHHHHh-hcccccccccccccccccccccccchhhHHHHHHHHHHHHhcccceeehhh
Confidence 00000011222333333 3444444333221 122344566777777788888888887776
Q ss_pred ChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccc
Q 009282 237 NGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVV 316 (538)
Q Consensus 237 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~ 316 (538)
......... ..+.. ........ .. .......+.+......+..
T Consensus 237 ~~~~~~~~~----~~~~~-------------------------------~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 279 (426)
T 3mkv_A 237 TPAAIARAV----RCGVR-------------------------------TIEHGNLI-DD-ETARLVAEHGAYVVPTLVT 279 (426)
T ss_dssp SHHHHHHHH----HTTCC-------------------------------EEEECTTC-CH-HHHHHHHHHTCEEECCHHH
T ss_pred hhhhHHHHH----hhccc-------------------------------cccccccc-cc-hhhhhhhhcCccccccccc
Confidence 553322211 12221 11111111 00 1122222222222111111
Q ss_pred cccccCcccccCCCcccccceeecCC--CCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchh
Q 009282 317 SGLVLDDSWLWHSDFVTAAKYVMSPP--IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIE 394 (538)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~p~--~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~ 394 (538)
........... . ......+. ............+...|+.+.+++|..+.....
T Consensus 280 ~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~d~~~~~~~~------------------- 334 (426)
T 3mkv_A 280 YDALASEGEKY--G----LPPESIAKIADVHGAGLHSIEIMKRAGVKMGFGTDLLGEAQRL------------------- 334 (426)
T ss_dssp HHHHHHHTTTT--T----CCHHHHTTHHHHHTTHHHHHHHHHHHTCCBCCCCCCCGGGGGG-------------------
T ss_pred hhhhhhhhhhc--c----ccccccccccccccccchhhHHhhhcCceeeeccCCcccccch-------------------
Confidence 00000000000 0 00000000 000012244567888899999999976442221
Q ss_pred hhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEE
Q 009282 395 ERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRV 474 (538)
Q Consensus 395 ~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (538)
....+ .++.. ++|++|||+++|.|||++||+++++|+|++||.|||||||.||+.++.. +...
T Consensus 335 --~~~~~-~~~~~-gls~~eal~~~T~~pA~~lgl~~~~Gsi~~G~~ADlvvlD~dPl~di~~-----------~~~~-- 397 (426)
T 3mkv_A 335 --QSDEF-RILAE-VLSPAEVIASATIVSAEVLGMQDKLGRIVPGAHADVLVVDGNPLKSVDC-----------LLGQ-- 397 (426)
T ss_dssp --TTHHH-HHHHT-TSCHHHHHHHTTHHHHHHTTCBTTBSSCCTTSBCCEEEESSCTTTCSTT-----------TCSS--
T ss_pred --HHHHH-HHHHh-CCCHHHHHHHHHHHHHHHhCCCCCcceeCCCCcceEEEECCChHHhHHH-----------HhCC--
Confidence 01111 22233 5999999999999999999998889999999999999999997754431 1111
Q ss_pred eeEEEEEEECCEEEEE
Q 009282 475 KGKVEVTIAGGRVVWE 490 (538)
Q Consensus 475 ~~~v~~V~v~G~~V~~ 490 (538)
..+|+.||++||+|.+
T Consensus 398 ~~~v~~Vi~~G~vv~~ 413 (426)
T 3mkv_A 398 GEHIPLVMKDGRLFVN 413 (426)
T ss_dssp STTCCEEEETTEEEEE
T ss_pred CCCccEEEECCEEEEC
Confidence 2468999999997654
|
| >1o12_A N-acetylglucosamine-6-phosphate deacetylase; structural genomics, TM0814, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} SCOP: b.92.1.5 c.1.9.10 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=233.91 Aligned_cols=318 Identities=17% Similarity=0.138 Sum_probs=173.4
Q ss_pred ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccC
Q 009282 68 QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVI 147 (538)
Q Consensus 68 ~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~ 147 (538)
..+++|+|+||||++|++ . + || +|++|+|||||+|+|+..+.. ... .++....++++++||||++|+..
T Consensus 27 ~~~~~V~I~~g~I~~vg~------~-~-iD-~g~~v~PGlID~H~H~~~~~~-~~~-~~l~~~~~~~l~~GvTtv~d~~~ 95 (376)
T 1o12_A 27 EFTGDVEIEEGKIVKVEK------R-E-CI-PRGVLMPGFVDPHIHGVVGAD-TMN-CDFSEMEEFLYSQGVTTFLATTV 95 (376)
T ss_dssp EEEEEEEEETTEEEEEEE------C-C-SC-CSSEEEECEEEEEECEETTEE-TTT-TCHHHHHHHHHTTTEEEEEEECC
T ss_pred ccCceEEEECCEEEEeCC------C-c-cC-CCCEEccCeEEEeecCCCCCC-CCh-hhHHHHHHHHHhCCcEEEEeccC
Confidence 368999999999999986 1 4 99 999999999999999976521 111 13666788899999999999864
Q ss_pred CCCC-CHHHHHHHHHHHhcc--cceeeeeeeeeecC--------ChhhHHHH-HHHHHHcCCcEEEEEeeeCCCccCCHH
Q 009282 148 PING-SLTAGFEAYEKKAKN--SCMDYGFHMAITKW--------DEVVSDEM-EVMVKEKGINSFKFFMAYKGSFMINDE 215 (538)
Q Consensus 148 ~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~~g~~~ik~~~~~~~~~~~~~~ 215 (538)
..+. ...+.++...+.... +....+.+...+.. +.+.+.+. .+..++. ...++...-.+. ....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~i~g~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pe---~~~~ 171 (376)
T 1o12_A 96 STSLEKMKEILRKARDYILENPSTSLLGVHLEGPYISKEKKGAHSEKHIRPPSERELSEI-DSPAKMLTFAPE---IESS 171 (376)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCTTCSEEEEEEECSSSCGGGCTTSCTTTCCCCCHHHHTTC-CTTEEEEEECTT---STTG
T ss_pred CCCHHHHHHHHHHHHHHhhccCCCceEEEEEEcCcCCcccCCCCCHHHhcCCCHHHHHHh-hCCeEEEEEccC---CccH
Confidence 3221 222223333222211 11112222211111 11111111 1222121 122332211111 0111
Q ss_pred HHHHHHHHHHhcCCeEEE-EcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCH
Q 009282 216 LLIEGFKRCKSLGALAMV-HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (538)
Q Consensus 216 ~l~~~~~~A~~~g~~v~~-H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~ 294 (538)
++++.|+++|+++++ |+.... +.++.+.+.|... +.|+.+.
T Consensus 172 ---~~i~~A~~~g~~v~igH~~~~~---~~i~~a~~~G~~~--------------------------------itH~~~~ 213 (376)
T 1o12_A 172 ---ELLLRLVKRDIVLSAGHSIATF---EEFMKFYKEGVKR--------------------------------ITHFPNG 213 (376)
T ss_dssp ---GGGGGGGGGTCEEEECSBCCCH---HHHHHHHTTTCCE--------------------------------ESSTTTT
T ss_pred ---HHHHHHHHCCCEEEeecCccCH---HHHHHHHHCCCCe--------------------------------EEecccC
Confidence 467778888888887 874321 1222223334321 2222100
Q ss_pred H------HHHHHHH-HHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc-CC-ceEEe
Q 009282 295 D------AMEEIAK-ARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-GI-LQLVG 365 (538)
Q Consensus 295 ~------~~~~i~~-~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~-Gv-~~~lg 365 (538)
. ....+.. +...+ ++.+...+. +.++| ..+..+++. |. .+++.
T Consensus 214 ~~~~~~~~~g~~~~~l~~~~--~~~~~~~~~------------------~~~~p--------~~~~~~~~~~g~~~~~~~ 265 (376)
T 1o12_A 214 LKPLHHREIGITGAGLLLDD--VKLELICDG------------------VHLSR--------EMVKLVYKVKKANGIVLV 265 (376)
T ss_dssp BCCCCSSCCHHHHHHHHCTT--CEEEEECSS------------------SSSCH--------HHHHHHHHHHTGGGEEEE
T ss_pred cCChhhcccchhhhhhcCCc--ceEEEeCCC------------------cCcCH--------HHHHHHHhhCCCCCEEEe
Confidence 0 0011110 11111 111111111 11222 224445555 55 78999
Q ss_pred CCCCCCC---hhhhhc-------CccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 366 TDHCAFN---STQKAF-------GIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 366 tD~~~~~---~~~~~~-------~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
||..... +..... ..+.+...+.+.++....+...++.++...+++++++++++|.|||++||++++ |+
T Consensus 266 sd~~~~~g~~~g~~~~~g~~~~~~~g~~~~~~g~~~g~~~~l~~~l~~~~~~~~~~~~~~l~~~T~~~A~~lgl~~~-G~ 344 (376)
T 1o12_A 266 TDSISAAGLKDGTTTLGDLVVKVKDGVPRLEDGTLAGSTLFFSQAVKNFRKFTGCSITELAKVSSYNSCVELGLDDR-GR 344 (376)
T ss_dssp CCBCTTTTSCSCEEESSSSEEEEETTEEECTTSCBCCBCCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTS-SC
T ss_pred cCchhhcCCCCeeEEECCeEEEEeCCeEEeCCCcccccccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCC-cc
Confidence 9864221 000000 001122234455565666777776677666799999999999999999999655 99
Q ss_pred cccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECC
Q 009282 436 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEND 492 (538)
Q Consensus 436 I~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~ 492 (538)
|++||.||||++|.+ .+|..||++|++||+++
T Consensus 345 i~~G~~ADlv~~d~~-------------------------~~v~~v~~~G~~v~~~~ 376 (376)
T 1o12_A 345 IAEGTRADLVLLDED-------------------------LNVVMTIKEGEVVFRSR 376 (376)
T ss_dssp CSTTSBCCEEEECTT-------------------------CCEEEEEETTEEEEEC-
T ss_pred CCCCCcCCEEEECCC-------------------------CCEEEEEECCEEEeecC
Confidence 999999999999965 36999999999999875
|
| >3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.1e-15 Score=112.77 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=56.6
Q ss_pred cccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCeeeccccccccccccc
Q 009282 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFVMPGGIDPHTHLAME 117 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v~PGlID~H~H~~~~ 117 (538)
..+++|+|++|++++. ...++|+|+||||++|++.... +.+.++||++|++|+|||||+|+|+..+
T Consensus 3 ~~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~~~~~~~~~~~~viD~~g~~v~PG~ID~H~H~~~p 73 (81)
T 3ggm_A 3 VPDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGDELLNSATEKTKKIDLKRKRAIPGLNDSHIHVIRG 73 (81)
T ss_dssp CCSEEEESSEEECSCTTCSEESEEEEETTEEEEEESGGGGGGCCTTCEEEECTTCEEEECCCCTTEEEECC
T ss_pred cCCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCchHhcccCCCCEEEECCCCEEeeCeEeeeeCCCCc
Confidence 3578999999999875 3688999999999999985432 3467899999999999999999999887
|
| >1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-10 Score=110.25 Aligned_cols=260 Identities=14% Similarity=0.094 Sum_probs=133.1
Q ss_pred cccccccccccccC--------CCCChhhHHHHHHHHHhCCcEEEecccCCCC-CCHHHHHHHHHHHhcccceeeeeeee
Q 009282 106 GGIDPHTHLAMEFM--------GSETIDDFFSGQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAKNSCMDYGFHMA 176 (538)
Q Consensus 106 GlID~H~H~~~~~~--------~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (538)
|+||+|+|+..... .....+.....++.+.+.|||+++++..... .......+...+.+.+.+...|++..
T Consensus 6 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~~~~ 85 (291)
T 1bf6_A 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 85 (291)
T ss_dssp SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred ceeeeccCeecCCcccccCCCcccCCHHHHHHHHHHHHHcCCCEEEecCCCcCCCCHHHHHHHHHhcCCeEEEeeccccC
Confidence 99999999975310 0112233444566778999999998864311 12322222222222122222333110
Q ss_pred e-ec-----CChhhH-HHHHHHHHHcCC-------cEEE-EEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009282 177 I-TK-----WDEVVS-DEMEVMVKEKGI-------NSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (538)
Q Consensus 177 ~-~~-----~~~~~~-~~~~~~~~~~g~-------~~ik-~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~ 241 (538)
. .+ .+.+.+ +.+.+.. ..|. ..++ +.+++.+......+.+++.++.|+++|+++.+|+......
T Consensus 86 ~~hP~~~~~~~~~~l~~~~~~~l-~~gi~~~~~~~~~iGe~gld~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~~~ 164 (291)
T 1bf6_A 86 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 164 (291)
T ss_dssp GGCCTHHHHSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSH
T ss_pred ccCcHhhhcCCHHHHHHHHHHHH-HhccCCcCcceeeEEEEecCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCCCh
Confidence 0 11 112222 2233333 2232 2332 1233221111123567889999999999999999532111
Q ss_pred HHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccccccc
Q 009282 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (538)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~ 321 (538)
.+.++.+.+.|+. ..++++.|+......+.+..+.+.|..+..+.... .
T Consensus 165 ~~~~~~l~~~~~~----------------------------~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~-~-- 213 (291)
T 1bf6_A 165 LEQLALLQAHGVD----------------------------LSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK-N-- 213 (291)
T ss_dssp HHHHHHHHHTTCC----------------------------GGGEEECCCCSSCCHHHHHHHHHTTCEEEECCTTC-T--
T ss_pred HHHHHHHHHcCCC----------------------------chhEEEECCCCCCCHHHHHHHHHCCCEEEEccCcc-c--
Confidence 1222222221211 13567899954222377778888898877653210 0
Q ss_pred CcccccCCCcccccceeecCCCCCcccHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHH
Q 009282 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~ 399 (538)
. .++ .......++++++.| -++.++||.+..+.. ....| ++....+..
T Consensus 214 -------------~----~~~--~~~~~~~~~~~~~~~~~dril~~TD~p~~~~~----------~~~~~-~~~~~~~~~ 263 (291)
T 1bf6_A 214 -------------S----YYP--DEKRIAMLHALRDRGLLNRVMLSMDITRRSHL----------KANGG-YGYDYLLTT 263 (291)
T ss_dssp -------------T----TSC--HHHHHHHHHHHHHTTCGGGEEECCCCCSGGGS----------GGGTS-CCTTHHHHT
T ss_pred -------------C----CCC--HHHHHHHHHHHHHhCCCCeEEEcCCCCCCccc----------hhcCC-CCHHHHHHH
Confidence 0 000 011234577888887 577999997532110 00112 222222333
Q ss_pred HHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 400 VWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 400 ~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
.+..+ ...|+|.+++.++.|.||+++||
T Consensus 264 ~~~~l-~~~g~~~~~~~~~~~~N~~rl~~ 291 (291)
T 1bf6_A 264 FIPQL-RQSGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp HHHHH-HHTTCCHHHHHHHHTHHHHHHCC
T ss_pred HHHHH-HHcCCCHHHHHHHHHHhHHHHhC
Confidence 44333 33469999999999999999985
|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
Probab=99.19 E-value=5.6e-10 Score=109.51 Aligned_cols=275 Identities=13% Similarity=0.046 Sum_probs=136.9
Q ss_pred cccccccccccccCCC--CCh------hhHHH----HHHHHHhCCcEEEecccCCCC-CCHHHHHHHHHHHhc-ccceee
Q 009282 106 GGIDPHTHLAMEFMGS--ETI------DDFFS----GQAAALAGGTTMHIDFVIPIN-GSLTAGFEAYEKKAK-NSCMDY 171 (538)
Q Consensus 106 GlID~H~H~~~~~~~~--~~~------~~~~~----~~~~~l~~GvTt~~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ 171 (538)
||||+|+|+....... ..+ ++... .+..+.++|||++++.+.... ...... .+..+..+ ..+...
T Consensus 16 GliD~H~HL~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~aGV~~iv~~~~~~~~~~~~~~-~~la~~~~~~i~~~~ 94 (330)
T 2ob3_A 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLL-AEVSRAADVHIVAAT 94 (330)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHH-HHHHHHHTCEEECEE
T ss_pred CCceeeeCeecCCchhccCCCchhhhccCHHHHHHHHHHHHHHcCCCEEEeCCCCCcCCCHHHH-HHHHHHhCCcEEEEe
Confidence 9999999997631111 011 22222 356688999999998864321 223333 33333332 344456
Q ss_pred eeee--ee--ecCChhhH-HHHHHHHHH--c----CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC--Ch
Q 009282 172 GFHM--AI--TKWDEVVS-DEMEVMVKE--K----GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE--NG 238 (538)
Q Consensus 172 ~~~~--~~--~~~~~~~~-~~~~~~~~~--~----g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~--~~ 238 (538)
|++. +. ...+.+.+ +.+.+.... . .+..+++.++ ........+.+++.++.|+++|+++.+|+. +.
T Consensus 95 G~hp~~p~~~~~~~~~~l~~~l~~~~~~gi~~~~~k~~aiEiGld-~~~~~~q~~~f~~q~~lA~~~glPv~iH~~~~~r 173 (330)
T 2ob3_A 95 GLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATT-GKATPFQELVLKAAARASLATGVPVTTHTAASQR 173 (330)
T ss_dssp ECCSCCCHHHHTCCHHHHHHHHHHHHHTCSTTSCCCCSEEEEECS-SSCCHHHHHHHHHHHHHHHHHCCCEEEECCGGGT
T ss_pred cCCcCCCchhccCCHHHHHHHHHHHHHhhccccccceeEEEEeCC-CCCCHHHHHHHHHHHHHHHHhCCeEEEECCCCCC
Confidence 6663 11 01122222 223322211 1 2445566555 221111234478889999999999999995 22
Q ss_pred hhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc-CHHHHHHHHHHHHcCCcEEEecccc
Q 009282 239 DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVS 317 (538)
Q Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~-~~~~~~~i~~~~~~g~~v~~~~~~~ 317 (538)
... +.++.+.+.|.. ..++.+.||. ..+. +.+.++.+.|..+..+....
T Consensus 174 ~a~-e~l~iL~~~g~~----------------------------~~~~~i~H~f~~~~~-e~a~~~~~~G~~i~~~~~G~ 223 (330)
T 2ob3_A 174 DGE-QQAAIFESEGLS----------------------------PSRVCIGHSDDTDDL-SYLTALAARGYLIGLDHIPY 223 (330)
T ss_dssp HHH-HHHHHHHHTTCC----------------------------GGGEEECSGGGCCCH-HHHHHHHHTTCEEEECCTTC
T ss_pred CHH-HHHHHHHHcCcC----------------------------cccEEEeCCCCCCCH-HHHHHHHhCCCEEEeCCCcc
Confidence 222 333333222221 0134688997 4444 78888889998876652110
Q ss_pred ccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcC--CceEEeCCCCC-CChh----hhhcCccCcccCCCCC
Q 009282 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCA-FNST----QKAFGIDDFRKIPNGV 390 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G--v~~~lgtD~~~-~~~~----~~~~~~~~~~~~~~g~ 390 (538)
..+....... ... .. ..++ .......++++++.| -.+.++||.+. ..+. .+..+ .+.|+
T Consensus 224 -~tf~~~~~~~-~~~--~~--~~~~--~~~~~~~l~~~~~~~p~drilleTD~p~~l~~~~~~~g~~~~----~n~pn-- 289 (330)
T 2ob3_A 224 -SAIGLEDNAS-ASA--LL--GIRS--WQTRALLIKALIDQGYMKQILVSNDWTFGFSSYVTNIMDVMD----RVNPD-- 289 (330)
T ss_dssp -CCTTCTTCHH-HHH--HH--CSSC--HHHHHHHHHHHHHTTCGGGEEECCCCCSEECSSSTTHHHHHH----HHCTT--
T ss_pred -cccccccccc-ccc--cc--cCCC--HHHHHHHHHHHHHhCCCCeEEEeCCCCCCcccccccCCCccc----ccCCC--
Confidence 0000000000 000 00 0000 001124477888888 68899999652 2110 00000 00010
Q ss_pred cchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 391 NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 391 ~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
+....+...+..+.. .|+|++++.++.|.||+++|+
T Consensus 290 -~~~~~~~~~ia~l~~-~G~~~eev~~~~t~N~~rlf~ 325 (330)
T 2ob3_A 290 -GMAFIPLRVIPFLRE-KGVPQETLAGITVTNPARFLS 325 (330)
T ss_dssp -GGGHHHHTHHHHHHH-TTCCHHHHHHHHTHHHHHHHS
T ss_pred -CcchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhc
Confidence 111112222223334 469999999999999999997
|
| >1zzm_A Putative deoxyribonuclease YJJV; hydrolaze, zinc, PEG, structural genomics, PSI; HET: P33; 1.80A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-08 Score=94.56 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=132.3
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeee-cCChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (538)
+||+|+|+... .. ..+.......+.++||++++.++... . ....+....+..+..+..+|++.... ...++..
T Consensus 5 ~iD~H~Hl~~~--~~--~~~~~~~l~~~~~~Gv~~~v~~~~~~-~-~~~~~~~l~~~~~~~~~~~G~hP~~~~~~~~~~~ 78 (259)
T 1zzm_A 5 FIDTHCHFDFP--PF--SGDEEASLQRAAQAGVGKIIVPATEA-E-NFARVLALAENYQPLYAALGLHPGMLEKHSDVSL 78 (259)
T ss_dssp EEESCBCTTST--TT--TTCHHHHHHHHHHTTEEEEEEECCSG-G-GHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEeeecCCch--hh--ccCHHHHHHHHHHcCCCEEEEecCCH-H-HHHHHHHHHHhCCCeEEEEEecccccccCCHHHH
Confidence 89999999765 11 12344457778899999998764332 1 22222233333333333344433211 1233456
Q ss_pred HHHHHHHHH--cCCcEEE-EEeeeCCC---ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009282 186 DEMEVMVKE--KGINSFK-FFMAYKGS---FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 186 ~~~~~~~~~--~g~~~ik-~~~~~~~~---~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (538)
++++++... .++.+++ +.+++.-. .....+.++..++.|.++|+++.+|+.... .+.++.+.+.+.
T Consensus 79 ~~l~~~~~~~~~~~~~iGEiGld~~~~~~~~~~q~~~f~~~~~~a~~~~~Pv~iH~~~a~--~~~~~il~~~~~------ 150 (259)
T 1zzm_A 79 EQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTH--DKLAMHLKRHDL------ 150 (259)
T ss_dssp HHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCH--HHHHHHHHHHCC------
T ss_pred HHHHHHHhcCCCCEEEEEEeccCCCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecccH--HHHHHHHHhcCC------
Confidence 677766644 3334442 23343211 112345788899999999999999996431 122222211111
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
..+. +.|+..... +.++.+.+.|+.+..+.... +..
T Consensus 151 -----------------------~~~~-i~H~~~g~~-~~~~~~~~~g~~i~~~g~~~-------------~~~------ 186 (259)
T 1zzm_A 151 -----------------------PRTG-VVHGFSGSL-QQAERFVQLGYKIGVGGTIT-------------YPR------ 186 (259)
T ss_dssp -----------------------TTCE-EETTCCSCH-HHHHHHHHTTCEEEECGGGG-------------CTT------
T ss_pred -----------------------CCCE-EEEcCCCCH-HHHHHHHHCCCEEEECceee-------------ccc------
Confidence 1234 448865543 66777777887766543210 000
Q ss_pred cCCCCCcccHHHHHHHHhc--CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHH
Q 009282 340 SPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~ 417 (538)
. ..++.+++. .-++.++||++...+. ++.... +. -..+...+..+....++|.+++.+
T Consensus 187 --~-------~~~~~~~~~~~~dril~eTD~P~~~p~-------~~~g~~---~~-p~~l~~~~~~la~~~g~~~e~~~~ 246 (259)
T 1zzm_A 187 --A-------SKTRDVIAKLPLASLLLETDAPDMPLN-------GFQGQP---NR-PEQAARVFAVLCELRREPADEIAQ 246 (259)
T ss_dssp --T-------CSHHHHHHHSCGGGEEECCCBTSSCCT-------TCTTSC---CC-GGGHHHHHHHHHHHCSSCHHHHHH
T ss_pred --c-------HHHHHHHHhCCHHHEEEecCCCCccCC-------CCCCCC---Cc-HHHHHHHHHHHHHHHCcCHHHHHH
Confidence 0 013334443 2478999996533221 111111 11 123444444444445699999999
Q ss_pred HHhHhHHHHcCC
Q 009282 418 LTSTECARIFNV 429 (538)
Q Consensus 418 ~aT~~~A~~lg~ 429 (538)
..|.|++++|++
T Consensus 247 ~~~~Na~rl~~l 258 (259)
T 1zzm_A 247 ALLNNTYTLFNV 258 (259)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCc
Confidence 999999999987
|
| >2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=99.09 Aligned_cols=268 Identities=13% Similarity=0.080 Sum_probs=132.9
Q ss_pred cccccccccccccCCC--CCh------hhHHHH---HHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcccceeeee
Q 009282 106 GGIDPHTHLAMEFMGS--ETI------DDFFSG---QAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGF 173 (538)
Q Consensus 106 GlID~H~H~~~~~~~~--~~~------~~~~~~---~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 173 (538)
||||+|+|+....... ..+ ++.... ...+.++|||+++++...... ......+...+.+.+.+...|+
T Consensus 17 G~iD~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gv~~iv~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~ 96 (314)
T 2vc7_A 17 GFTLIHEHLRVFSEAVRQQWPHLYNEDEEFRNAVNEVKRAMQFGVKTIVDPTVMGLGRDIRFMEKVVKATGINLVAGTGI 96 (314)
T ss_dssp CSEESSCBSCBCCHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECEEB
T ss_pred CCcccccccccCcchhcccCcchhhhcccHHHHHHHHHHHHHcCCCEEEecCCCCCCcCHHHHHHHHHHcCCeEEEEeec
Confidence 9999999997631110 001 222222 356778999999988644222 2333333322222233444555
Q ss_pred eeeee--cC-ChhhHHHHHHHHH---HcCCc-------EEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC-hh
Q 009282 174 HMAIT--KW-DEVVSDEMEVMVK---EKGIN-------SFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GD 239 (538)
Q Consensus 174 ~~~~~--~~-~~~~~~~~~~~~~---~~g~~-------~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~-~~ 239 (538)
+.... .. .+...+++.++.. ..|.. .+++.+++.+......+.+++.++.|+++|+++.+|+.. ..
T Consensus 97 hp~~~~~~~~~~~~~~~l~~~~~~~~~~gige~G~~~g~i~~~ld~~~~~~~q~~~~~~~~~lA~~~~~pv~iH~~~~~~ 176 (314)
T 2vc7_A 97 YIYIDLPFYFLNRSIDEIADLFIHDIKEGIQGTLNKAGFVKIAADEPGITKDVEKVIRAAAIANKETKVPIITHSNAHNN 176 (314)
T ss_dssp CCSSCCCGGGTTCCHHHHHHHHHHHHHTCSSSSSCCCCSEEEECCTTCSCHHHHHHHHHHHHHHHHHCCCEEEECCTTTT
T ss_pred CCCCCCchhhhccCHHHHHHHHHHHHHhhcccCCCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHHCCEEEEeCCCccc
Confidence 54221 11 1122344444332 12221 244445554322222456778889999999999999952 11
Q ss_pred hHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccccc
Q 009282 240 AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGL 319 (538)
Q Consensus 240 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~ 319 (538)
...+.++.+.+.|+. ..++.+.|+......+.+..+.+.|..+..+.... .
T Consensus 177 ~~~~~~~~l~~~~~~----------------------------~~~~~i~H~~~~~~~~~~~~~~~~G~~i~~~~~~~-~ 227 (314)
T 2vc7_A 177 TGLEQQRILTEEGVD----------------------------PGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGL-D 227 (314)
T ss_dssp HHHHHHHHHHHTTCC----------------------------GGGEEETTGGGCCCHHHHHHHHHTTCEEEECCTTC-T
T ss_pred ChHHHHHHHHHcCCC----------------------------cccEEEECCCCCCCHHHHHHHHHcCCEEEEeCCCc-c
Confidence 112333332222221 12557889865222377778888898776653210 0
Q ss_pred ccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc--CCceEEeCCCCCCChhhhhcCccCcccCCCCCc--chhh
Q 009282 320 VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVN--GIEE 395 (538)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~--g~~~ 395 (538)
.+. ........+..+++. +-++.++||....++... . +++. .+.|.. +...
T Consensus 228 ----------~~~-----------~~~~~~~~i~~~~~~g~~drilleTD~~~~~~~~~-~--~p~~-~~~g~~~~~~~~ 282 (314)
T 2vc7_A 228 ----------LFL-----------PVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGT-A--KPEY-KPKLAPRWSITL 282 (314)
T ss_dssp ----------TTS-----------CHHHHHHHHHHHHHTTCTTTEEECCCCBSSBCCGG-G--CTTS-HHHHCTTCSTTH
T ss_pred ----------cCC-----------CHHHHHHHHHHHHHcCCCCeEEEcCCccccccccc-c--chhh-hhcCCCCcCHHH
Confidence 000 000112335566665 457799999742210000 0 0110 000111 1111
Q ss_pred hHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 396 RMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 396 ~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
.+...+..+ ...|++.+++.++.|.||+++|+
T Consensus 283 ~~~~~~~~l-~~~g~~~e~~~~~~~~N~~rlf~ 314 (314)
T 2vc7_A 283 IFEDTIPFL-KRNGVNEEVIATIFKENPKKFFS 314 (314)
T ss_dssp HHHTHHHHH-HHTTCCHHHHHHHHTHHHHHHTC
T ss_pred HHHHHHHHH-HHcCCCHHHHHHHHHHCHHHHhC
Confidence 122333233 33469999999999999999885
|
| >3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.96 E-value=6.2e-08 Score=92.36 Aligned_cols=252 Identities=12% Similarity=0.072 Sum_probs=140.7
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcc----cceeeeeeeeee-cCC
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN----SCMDYGFHMAIT-KWD 181 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~ 181 (538)
|||+|+|+... . ..++.......+..+||..++..+... ..........+..+. .+..+|++.... ...
T Consensus 3 ~iD~H~HL~~~--~--~~~d~~~vl~~a~~~gV~~~v~~g~~~--~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~~~~ 76 (287)
T 3rcm_A 3 LIDIGVNLTNS--S--FHDQQAAIVERALEAGVTQMLLTGTSL--AVSEQALELCQQLDASGAHLFATAGVHPHDAKAWD 76 (287)
T ss_dssp EEEEEECTTCG--G--GTTCHHHHHHHHHHTTEEEEEECCCSH--HHHHHHHHHHHHHCTTSSSEEEEECCCGGGGGGCC
T ss_pred eEEEeecCCch--h--cccCHHHHHHHHHHcCCeEEEEecCCH--HHHHHHHHHHHhCCCCCceEEEEEEECcCccccCC
Confidence 89999999765 1 123455567888999999988653321 122222233333333 444555554322 233
Q ss_pred hhhHHHHHHHHHHcCCcEEE-EEeeeCCCc---cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcc
Q 009282 182 EVVSDEMEVMVKEKGINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPE 257 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~ 257 (538)
++.++.++++.....+.+++ +.+++.... ....+.+++.++.|.++++++.+|+.... .+.++.+.+.+.
T Consensus 77 ~~~~~~l~~l~~~~~vvaIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~e~~lPv~iH~r~a~--~~~l~il~~~~~---- 150 (287)
T 3rcm_A 77 TDSERQLRLLLSEPRVRAVGECGLDFNRDFSPRPLQEKALEAQLTLAAQLRLPVFLHERDAS--ERLLAILKDYRD---- 150 (287)
T ss_dssp TTHHHHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHTTGG----
T ss_pred HHHHHHHHHHhcCCCeEEEEEeeeCCCcccCcHHHHHHHHHHHHHHHHHhCCCEEEEcCCcH--HHHHHHHHHcCC----
Confidence 45677777776444555555 335553211 12366788999999999999999996542 223322222111
Q ss_pred cccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccce
Q 009282 258 GHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (538)
Q Consensus 258 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
...+. +.|+.+.+. +.++.+.+.|+.+..+... .+. ..
T Consensus 151 ------------------------~~~~~-V~H~fsG~~-e~a~~~l~~G~yis~~g~i---~~~---------k~---- 188 (287)
T 3rcm_A 151 ------------------------HLTGA-VVHCFTGER-EALFAYLDLDLHIGITGWI---CDE---------RR---- 188 (287)
T ss_dssp ------------------------GCSCE-EECSCCCCH-HHHHHHHHTTCEEEECGGG---GCT---------TT----
T ss_pred ------------------------CCCeE-EEEeCCCCH-HHHHHHHHCCcEEEECchh---ccc---------cC----
Confidence 01133 558866554 7777788889877654221 000 00
Q ss_pred eecCCCCCcccHHHHHHHHhc--CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHH
Q 009282 338 VMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (538)
Q Consensus 338 ~~~p~~r~~~~~~~l~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~ea 415 (538)
. ..++++++. --++.+.||.+-..+. ++.....|-...-..+...++.+....|++.+++
T Consensus 189 -------~----~~l~~~v~~ip~drlLlETD~P~l~p~-------~~~~~~rg~~n~P~~l~~v~~~lA~~~g~s~eev 250 (287)
T 3rcm_A 189 -------G----THLHPLVGNIPEGRLMLESDAPYLLPR-------SLRPKPKSGRNEPAFLPEVLREVALHRGESAEHT 250 (287)
T ss_dssp -------C----GGGHHHHTTSCTTSEEECCCTTSCCCT-------TCSSCCTTCCCCGGGHHHHHHHHHHHHTSCHHHH
T ss_pred -------H----HHHHHHHHhcCCccEEEeccCCccCcc-------ccccccCCCcCCHHHHHHHHHHHHHHhCcCHHHH
Confidence 0 113344443 2468999996543321 1100011211112234444544444456999999
Q ss_pred HHHHhHhHHHHcCCC
Q 009282 416 VRLTSTECARIFNVY 430 (538)
Q Consensus 416 l~~aT~~~A~~lg~~ 430 (538)
.++.|.|+.+++|+.
T Consensus 251 ~~~~~~N~~rlf~l~ 265 (287)
T 3rcm_A 251 AAHTTATARDFFQLP 265 (287)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999999984
|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.7e-08 Score=93.78 Aligned_cols=279 Identities=15% Similarity=0.086 Sum_probs=153.8
Q ss_pred cccccccccccccC---------CCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHH----hcccceeee
Q 009282 106 GGIDPHTHLAMEFM---------GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK----AKNSCMDYG 172 (538)
Q Consensus 106 GlID~H~H~~~~~~---------~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 172 (538)
|+..+|=|+...+. .....+.....++.+.+.|++|++|+...........+....+. +-..++..|
T Consensus 21 G~tl~HEHl~~~~~~~~~~~~~~~l~d~~~~~~el~~~~~~G~~tiVd~t~~~~GRd~~~l~~is~~t~~~Gv~Iv~~TG 100 (363)
T 3ovg_A 21 GITDCHDHFIKNGGPEVEEHIDFLMLNVDASIKEFKEFIDRGGSTIVTMDPPNVGRDVLKTLEIANAVKNLGGNVIMSTG 100 (363)
T ss_dssp CEEEEEECSCBCSSHHHHHCGGGCBCCHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCceeccceeccCChhhccCCcccccCHHHHHHHHHHHHHhCCCeEEEeCCCccCCCHHHHHHHHHhcccCCcEEEEeCC
Confidence 77888888865421 01123344445566778999999998644433333444444443 344555556
Q ss_pred eeeeee-----c----CC-hhhHHHHHHHHHHcC-----------------CcEEEEEeeeCCCccCCHHHHHHHHHHHH
Q 009282 173 FHMAIT-----K----WD-EVVSDEMEVMVKEKG-----------------INSFKFFMAYKGSFMINDELLIEGFKRCK 225 (538)
Q Consensus 173 ~~~~~~-----~----~~-~~~~~~~~~~~~~~g-----------------~~~ik~~~~~~~~~~~~~~~l~~~~~~A~ 225 (538)
++.... . .+ ++..+.+..-+ ..| +..+|+..++........+.+++.++.|+
T Consensus 101 ~y~~~~~~~~~~~~~~~~~e~l~~~~~~ei-~~Gi~~~~~~gp~~~~t~ikaG~ikig~s~~~~t~~Q~~~f~aq~~~A~ 179 (363)
T 3ovg_A 101 FHKAKFYDKYSSWLAVVPTEEIVKMCVAEI-EEGMDEYNYNGPVVKRSKAKAGIIKAGTGYGAIDRLELKALEVAARTSI 179 (363)
T ss_dssp CCCGGGSCTTTSHHHHSCHHHHHHHHHHHH-HTCCBTTTTSSSCCCBCSCCCCEEEEEEEETBEEHHHHHHHHHHHHHHH
T ss_pred CCcCcccccCcHhhhcCCHHHHHHHHHHHH-HhcccccccccccccCCCccCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 554321 1 11 12222222212 222 34567777765333334677888899999
Q ss_pred hcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHH-
Q 009282 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKAR- 304 (538)
Q Consensus 226 ~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~- 304 (538)
+.|+++.+|........+.++.+.+.++. ..++.+.|+....+.+....+.
T Consensus 180 e~glPViiH~r~gr~a~d~l~iL~e~g~~----------------------------~~~vvi~H~~~~~~~~~a~~~l~ 231 (363)
T 3ovg_A 180 LTGCPILVHTQLGTMALEVAKHLIGFGAN----------------------------PDKIQISHLNKNPDKYYYEKVIK 231 (363)
T ss_dssp HHCCCEEEEEETTCSHHHHHHHHHHHTCC----------------------------GGGEEEECGGGSCCHHHHHHHHH
T ss_pred HhCCEEEEeCCCCCCHHHHHHHHHhcCCC----------------------------CCcEEEEcCCCCCCHHHHHHHHH
Confidence 99999999995321111333333333321 1246788987422235555666
Q ss_pred HcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCC--ceEEeCCCCCC---ChhhhhcC
Q 009282 305 KAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAF---NSTQKAFG 379 (538)
Q Consensus 305 ~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv--~~~lgtD~~~~---~~~~~~~~ 379 (538)
+.|..+..+-... +++.|. ......++.+.+.|. ++.+.||.+.. ++..+..+
T Consensus 232 ~~G~yI~f~g~~~-------------------~~~~~~---~~ra~~l~~lv~~~p~drILleTDap~~~~l~~~G~~~g 289 (363)
T 3ovg_A 232 ETGVTLCFDGPDR-------------------VKYYPD---SLLAENIKYLVDKGLQKHITLSLDAGRILYQRNYGLTKG 289 (363)
T ss_dssp HHCCEEEECCTTC-------------------TTTCCH---HHHHHHHHHHHHTTCGGGEEECCCCCSGGGSHHHHHHTT
T ss_pred HCCcEEEECCeec-------------------cccCCh---hHHHHHHHHHHHhcCCCeEEEeCCCCCCcCCCCCCccCC
Confidence 7887776543210 000000 011245677787765 78999997622 11111000
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEE
Q 009282 380 IDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 445 (538)
Q Consensus 380 ~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlv 445 (538)
...+ +.. .+...+..+....|+|.+++.++.|.||+++|++ +..+++.+||.-+-|
T Consensus 290 -----~~~n---~p~-~l~~~~~~~a~~rGis~eei~~it~~Np~rlf~l-~~~~~~~~~~~~~~~ 345 (363)
T 3ovg_A 290 -----KQTF---GLA-YLFDRFLPLLKQVGVSKEAIFDILVNNPKRVLAF-DEKRNFDPLKVSKEV 345 (363)
T ss_dssp -----EECC---CTH-HHHHTHHHHHHHHTCCHHHHHHHHTHHHHHHTSC-CCCCCCCGGGSCHHH
T ss_pred -----CCCC---Ccc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCC-CCcCccCcccCCHHH
Confidence 0001 111 1222233344455699999999999999999999 667999999976543
|
| >2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-07 Score=84.23 Aligned_cols=241 Identities=13% Similarity=0.078 Sum_probs=132.3
Q ss_pred cccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc-ccceeeeeeeee-ec----
Q 009282 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAI-TK---- 179 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~---- 179 (538)
++||+|+|+..... ..+.......+.++||++++.++... . ....+....+..+ +.+..+|++... ..
T Consensus 5 ~~iD~H~Hl~~~~~----~~~~~~~l~~~~~~Gv~~~v~~~~~~-~-~~~~~~~l~~~~~~~i~~~~GihP~~~~~~~~~ 78 (272)
T 2y1h_A 5 GLVDCHCHLSAPDF----DRDLDDVLEKAKKANVVALVAVAEHS-G-EFEKIMQLSERYNGFVLPCLGVHPVQGLPPEDQ 78 (272)
T ss_dssp CEEEEEECTTSGGG----TTTHHHHHHHHHHTTEEEEEECCSSG-G-GHHHHHHHHHHTTTTEEEEECCCSBC-------
T ss_pred cEEEEeeCCCchhh----hcCHHHHHHHHHHCCCCEEEEeCCCH-H-HHHHHHHHHHHCCCCEEEEEEECCCcccccccc
Confidence 59999999976411 12444557778899999999875432 1 2222223333333 233445555422 11
Q ss_pred --CChhhHHHHHHHHHH--cCCcEEE-EEeeeCCCc-------cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHH
Q 009282 180 --WDEVVSDEMEVMVKE--KGINSFK-FFMAYKGSF-------MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKR 247 (538)
Q Consensus 180 --~~~~~~~~~~~~~~~--~g~~~ik-~~~~~~~~~-------~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~ 247 (538)
...+.++++.++..+ ..+.+++ +.+++.... ....+.++..++.|.++|+++.+|+.... .+.++.
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~~~~iGE~Gld~~~~~~~~~~~~~~q~~~f~~~~~la~~~~lPv~iH~~~a~--~~~~~i 156 (272)
T 2y1h_A 79 RSVTLKDLDVALPIIENYKDRLLAIGEVGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAG--RPTINL 156 (272)
T ss_dssp CBCCHHHHHHHHHHHHHHGGGCSEEEEEECCCCTTTCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEECTTCH--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEEeccCCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEeCCcH--HHHHHH
Confidence 223445666665533 3444554 233431111 11245788899999999999999996431 122222
Q ss_pred HHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcC-CCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccc
Q 009282 248 MIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN-TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWL 326 (538)
Q Consensus 248 ~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~ 326 (538)
....+ .++++ |+..... +.++.+.+.|+.+..+...
T Consensus 157 -------------------------------l~~~~~~~~v~-H~~~g~~-~~~~~~~~~g~~i~~~g~~---------- 193 (272)
T 2y1h_A 157 -------------------------------LQEQGAEKVLL-HAFDGRP-SVAMEGVRAGYFFSIPPSI---------- 193 (272)
T ss_dssp -------------------------------HHHTTCCSEEE-ETCCSCH-HHHHHHHHTTCEEEECGGG----------
T ss_pred -------------------------------HHhCCCCCEEE-EccCCCH-HHHHHHHHCCCEEEECCcc----------
Confidence 22222 34555 8866543 6777788888776654321
Q ss_pred cCCCcccccceeecCCCCCcccHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHh
Q 009282 327 WHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTM 404 (538)
Q Consensus 327 ~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~ 404 (538)
.+ + ..++.+.+.. -++.++||.+...+. .|....-..+...+..+
T Consensus 194 ---------~~---~--------~~~~~~~~~~~~drll~eTD~P~~~p~-------------~g~~~~p~~l~~~~~~l 240 (272)
T 2y1h_A 194 ---------IR---S--------GQKQKLVKQLPLTSICLETDSPALGPE-------------KQVRNEPWNISISAEYI 240 (272)
T ss_dssp ---------GT---C--------HHHHHHHHHSCGGGEEECCCTTSSCSS-------------TTSCCCGGGHHHHHHHH
T ss_pred ---------cC---c--------HHHHHHHHhCCHHHEEEecCCCCCCCC-------------CCCcCcHHHHHHHHHHH
Confidence 00 0 1244444442 367999997533211 00000011223333333
Q ss_pred hhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 405 VESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 405 ~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
....|++.+++.+..|.|++++|+++
T Consensus 241 a~~~g~~~e~~~~~~~~N~~~l~~~~ 266 (272)
T 2y1h_A 241 AQVKGISVEEVIEVTTQNALKLFPKL 266 (272)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHhH
Confidence 33336999999999999999999984
|
| >1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-07 Score=88.56 Aligned_cols=250 Identities=10% Similarity=0.027 Sum_probs=129.7
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeee-cCChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (538)
+||+|+|+..... ..+.......+.++||++++.++.. ......+....+..+..+..+|++.... ...++..
T Consensus 5 ~iD~H~Hl~~~~~----~~~~~~~l~~~~~~Gv~~~v~~~~~--~~~~~~~~~l~~~~~~i~~~~G~hP~~~~~~~~~~~ 78 (264)
T 1xwy_A 5 MFDIGVNLTSSQF----AKDRDDVVACAFDAGVNGLLITGTN--LRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATE 78 (264)
T ss_dssp CEEEEECTTSGGG----TTTHHHHHHHHHHTTCCEEEECCCS--HHHHHHHHHHHHHSTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEEeeCCCChhh----ccCHHHHHHHHHHCCCCEEEEeCCC--HHHHHHHHHHHHhCCCEEEEEEECCcccccCCHHHH
Confidence 8999999976511 1234455677889999998876432 1112222222222222222333332211 2233455
Q ss_pred HHHHHHHHHcCCcEEEE-EeeeCCCc---cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVKEKGINSFKF-FMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~~~g~~~ik~-~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
+++.++....+..+++. .+++.... ....+.++..++.|.++|+++.+|+... ..+.++.+.+.+
T Consensus 79 ~~l~~~~~~~~~~~iGE~Gld~~~~~~~~~~q~~~f~~~l~~a~~~~lpv~iH~~~a--~~~~~~il~~~~--------- 147 (264)
T 1xwy_A 79 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDA--HERFMTLLEPWL--------- 147 (264)
T ss_dssp HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESC--HHHHHHHHGGGG---------
T ss_pred HHHHHHhcCCCeEEEEEeccCCCCCCCcHHHHHHHHHHHHHHHHHhCCcEEEEcCCc--hHHHHHHHHhcC---------
Confidence 66666663334444442 23432111 1113458889999999999999999543 112222221111
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
....++++ |+..... +.++.+.+.|+.+..+.... .+.
T Consensus 148 -------------------~~~~~~v~-H~~~g~~-~~~~~~~~~g~yi~~~g~~~------------~~~--------- 185 (264)
T 1xwy_A 148 -------------------DKLPGAVL-HCFTGTR-EEMQACVAHGIYIGITGWVC------------DER--------- 185 (264)
T ss_dssp -------------------GGSSCEEE-CSCCCCH-HHHHHHHHTTCEEEECGGGG------------CTT---------
T ss_pred -------------------CCCCcEEE-EccCCCH-HHHHHHHHCCeEEEECcccc------------CCc---------
Confidence 01234544 9865443 66777777887665442210 000
Q ss_pred CCCCcccHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCccC-cccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHH
Q 009282 342 PIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDD-FRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRL 418 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~-~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~ 418 (538)
....++.+++.. -++.++||++...+... .+ +. |-...-..+...+..+....++|.+++.+.
T Consensus 186 ------~~~~l~~~~~~~~~drll~eTD~P~~~~~~~----~~~~~----g~~n~p~~~~~~~~~~a~~~g~~~e~~~~~ 251 (264)
T 1xwy_A 186 ------RGLELRELLPLIPAEKLLIETDAPYLLPRDL----TPKPS----SRRNEPAHLPHILQRIAHWRGEDAAWLAAT 251 (264)
T ss_dssp ------TSHHHHHHGGGSCGGGEEECCCTTSCCCTTC----TTCCC----SSCCCGGGHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ------CcHHHHHHHHhCCHHHEEEecCCCCcCcccc----ccccC----CCCCchHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 002355555542 37899999753322100 00 10 100001123333433333346999999999
Q ss_pred HhHhHHHHcCC
Q 009282 419 TSTECARIFNV 429 (538)
Q Consensus 419 aT~~~A~~lg~ 429 (538)
.+.|+++++|+
T Consensus 252 ~~~Na~rl~~l 262 (264)
T 1xwy_A 252 TDANVKTLFGI 262 (264)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHhCc
Confidence 99999999997
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-06 Score=85.58 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=99.4
Q ss_pred CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
++.++.+..+ ....+.+.+..+++.|+++|+++.+|+.+...... +..+
T Consensus 164 ~vvG~dL~g~---E~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~----------------------------i~~a 212 (343)
T 3rys_A 164 PIAGIGLDSA---EVGNPPSKFERLYQRAAEAGLRRIAHAGEEGPASY----------------------------ITEA 212 (343)
T ss_dssp CCCEEEEESC---CTTCCGGGGHHHHHHHHHTTCEEEEEESSSSCHHH----------------------------HHHH
T ss_pred CEEEEecCCc---ccCCCHHHHHHHHHHHHHCCCeEEEeeCCCCCHHH----------------------------HHHH
Confidence 4555554322 22346788999999999999999999954322111 1111
Q ss_pred HHHHHHcCCCEEEEeccCHHH-HHHHHHHHHcCCcEEEeccccccccCcccccCCCccccc--ceeecCCCCCcccHHHH
Q 009282 276 IRLAEFVNTPLYVVHVMSMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA--KYVMSPPIRASGHNKAL 352 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~~~~~-~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~r~~~~~~~l 352 (538)
+. .++.. .+.|+..... .+.++.++++|+.+..||.+. +.++. .+.. .++
T Consensus 213 l~---~lg~~-rIgHgv~l~~d~~l~~~l~~~~i~le~cP~SN-------------~~l~~~~~~~~----------hPi 265 (343)
T 3rys_A 213 LD---VLHVE-RIDHGIRCMEDTDVVQRLVAEQVPLTVCPLSN-------------VRLRAVDKLAD----------HPL 265 (343)
T ss_dssp HH---TSCCS-EEEECGGGGGCHHHHHHHHHHTCCEEECHHHH-------------HHTTSSSCGGG----------CSH
T ss_pred Hh---cCCcc-eeeeeeeecCChHHHHHHHhcCCCeeEchhHH-------------HHhCCCCCccc----------chH
Confidence 11 12332 4778876542 378999999999999999873 22211 1111 128
Q ss_pred HHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 353 ~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
+.++++|++++++||.+..... .+...+..+....++++++ ++.+|.|++++..++
T Consensus 266 ~~ll~~Gv~V~l~TDdp~~~~~---------------------~l~~E~~~a~~~~~l~~~~-l~~l~~nsi~~sf~~ 321 (343)
T 3rys_A 266 PEMLAIGLNVCVNSDDPAYFGG---------------------YVDDNFEQLVKVLEFSVPE-QATLAANSIRSSFAS 321 (343)
T ss_dssp HHHHHTTCCEEECCBSTTTTTC---------------------CHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHSSSC
T ss_pred HHHHHCCCeEEEeCCCccccCC---------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHCCC
Confidence 9999999999999997644211 2233332333434699999 577799999988874
|
| >2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3e-07 Score=91.34 Aligned_cols=143 Identities=11% Similarity=0.058 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccC
Q 009282 214 DELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS 293 (538)
Q Consensus 214 ~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~ 293 (538)
.+.++.+++.|+++|+++.+|+.+... | .+ ...+..++ ..++.. .+.|+..
T Consensus 214 ~~~~~~~~~~A~~~gl~~~~HagE~~~-----------~----------~~----~~~i~~al---~~lg~~-ri~Hgv~ 264 (371)
T 2pgf_A 214 LKEYKEIFDYVRESGVPLSVHAGEDVT-----------L----------PN----LNTLYSAI---QVLKVE-RIGHGIR 264 (371)
T ss_dssp GGGGHHHHHHHHHTTCCBEEEESCCTT-----------S----------SS----SHHHHHHH---HTSCCS-EEEECGG
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCCCC-----------C----------Cc----hHHHHHHH---hccCCC-EEecchh
Confidence 788999999999999999999954310 0 00 01111111 123444 5888876
Q ss_pred HHH-HHHHHHHHHcCCcEEEeccccccccCcccccCCCccccc--ceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCC
Q 009282 294 MDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA--KYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (538)
Q Consensus 294 ~~~-~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~ 370 (538)
... .+.++.+++.|+.+..||.+. +..+. .+. .. ++..++++|+++++|||.+.
T Consensus 265 l~~~~~l~~~l~~~~i~v~~cP~SN-------------~~l~~~~~~~-~~---------pi~~ll~~Gv~V~lgTD~~~ 321 (371)
T 2pgf_A 265 VAESQELIDMVKEKNILLEVCPISN-------------VLLKNAKSMD-TH---------PIRQLYDAGVKVSVNSDDPG 321 (371)
T ss_dssp GGGCHHHHHHHHHTTCEEEECHHHH-------------HHTTSSSCGG-GC---------THHHHHHTTCEEEECCBCHH
T ss_pred ccccHHHHHHHHHcCCeEEECcchh-------------HHhCCCCccc-cC---------hHHHHHHCCCeEEEeCCCCc
Confidence 643 145899999999999999863 22211 111 11 28899999999999999643
Q ss_pred CChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
.+. ..+...+..+....+++++++ +++|.|++++.+++
T Consensus 322 ~~~---------------------~~l~~e~~~a~~~~~l~~~~l-~~lt~ns~~asf~~ 359 (371)
T 2pgf_A 322 MFL---------------------TNINDDYEELYTHLNFTLEDF-MKMNEWALEKSFMD 359 (371)
T ss_dssp HHT---------------------CCHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHCCSC
T ss_pred ccC---------------------CCHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHcCC
Confidence 211 012222223333346999996 88899999999884
|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-07 Score=89.35 Aligned_cols=262 Identities=15% Similarity=0.104 Sum_probs=138.7
Q ss_pred cccccccccccccC-------C---CCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHH-HHhcccceeeeee
Q 009282 106 GGIDPHTHLAMEFM-------G---SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE-KKAKNSCMDYGFH 174 (538)
Q Consensus 106 GlID~H~H~~~~~~-------~---~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 174 (538)
|+..+|=|+..... . ....+.....++.+.+.|++|++|+....-......+.... +.+-+..+..|++
T Consensus 17 G~t~~HEHl~~~~~~~~~~~~~~~~l~~~~~~~~el~~~~~~G~~tiVd~t~~~~gR~~~~l~~is~~tgv~iv~~TG~y 96 (330)
T 3pnz_A 17 GFTYSHEHIVCVPAYWQERDADDLLLDDKEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFN 96 (330)
T ss_dssp CSEEEEECCSBCCHHHHTTTCGGGCBCCHHHHHHHHHHHHHTTCCEEEECCCGGGCBCHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCceeccCceecChhhhhcCCCcccccCHHHHHHHHHHHHHhCCCEEEECCCCccccCHHHHHHHHHHhCCEEEEeCCCC
Confidence 77788888765310 0 11223333456667889999999986444332233333333 3344455556665
Q ss_pred eeee--------------------cC----ChhhH-HHHHHHHHHcC-----Cc--EEEEEeeeCCCccCCHHHHHHHHH
Q 009282 175 MAIT--------------------KW----DEVVS-DEMEVMVKEKG-----IN--SFKFFMAYKGSFMINDELLIEGFK 222 (538)
Q Consensus 175 ~~~~--------------------~~----~~~~~-~~~~~~~~~~g-----~~--~ik~~~~~~~~~~~~~~~l~~~~~ 222 (538)
.... .+ +.+.+ +.+..-. ..| +. .+++.++++.......+.+++.++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ei-~~Gi~~t~vkaGvIEiGld~~~~~~~q~~~f~aq~~ 175 (330)
T 3pnz_A 97 KSFLWDGKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEV-ENGLEGTPYKAGQVKFGTGYNMITPLEEKTIRAVAR 175 (330)
T ss_dssp CGGGGGSBCCGGGHHHHCSCSBHHHHHHTSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccCchhhccCCHHHHHHHHHHHH-HhhCCCcCcCcCeEEEEcCCCCCCHHHHHHHHHHHH
Confidence 4210 00 11111 1122112 223 22 257776664333334577788899
Q ss_pred HHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc-CHHHHHHHH
Q 009282 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIA 301 (538)
Q Consensus 223 ~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~-~~~~~~~i~ 301 (538)
.|++.|+++.+|........+.++.+.+.|.. ..++.+.||. +.+ .+...
T Consensus 176 ~A~~~glPViiH~r~g~~a~~~l~iL~e~~~~----------------------------~~~vvi~H~~~s~~-~e~a~ 226 (330)
T 3pnz_A 176 AHHETKAPIHSHTEAGTMALEQIEILKQENIP----------------------------LEYLSIGHMDRNLD-PYYHK 226 (330)
T ss_dssp HHHHHCCCEEEECGGGCCHHHHHHHHHHTTCC----------------------------GGGEEETTGGGSCC-HHHHH
T ss_pred HHHHHCCeEEEeCCCCcChHHHHHHHHHcCCC----------------------------CCeEEEecCCCCCC-HHHHH
Confidence 99999999999986421122223333333322 1245677985 433 47777
Q ss_pred HHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCC--ceEEeCCCCCCChhhhhcC
Q 009282 302 KARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFG 379 (538)
Q Consensus 302 ~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv--~~~lgtD~~~~~~~~~~~~ 379 (538)
.+.+.|..+..+-... +++.|. ......+..+.+.|. ++.++||.+..+ .....+
T Consensus 227 ~~l~~G~~i~~~g~~t-------------------~~~~~~---~~~~~~l~~lv~~g~~drilleTD~p~~~-~~~~~G 283 (330)
T 3pnz_A 227 QVAKTGAFMSFDGIAK-------------------IKYAPE---SARIAAILYLVSEGFEDQILVSGDTARKT-YYKHYG 283 (330)
T ss_dssp HHHTTTCEEEECCTTC-------------------TTTCCH---HHHHHHHHHHHHTTCGGGEEECCCCCSGG-GSHHHH
T ss_pred HHHHcCcEEEEccCcc-------------------cCCCCh---HHHHHHHHHHHHcCCCCeEEEeCCCCCCC-CCCccC
Confidence 7888897776543210 000000 011234677777764 789999965321 111000
Q ss_pred ccCcccCCCCCcchhhhHHHHHHHh---hhcCCCCHHH-HHHHHhHhHHHHcCC
Q 009282 380 IDDFRKIPNGVNGIEERMHLVWDTM---VESGQISVTD-YVRLTSTECARIFNV 429 (538)
Q Consensus 380 ~~~~~~~~~g~~g~~~~~~~~~~~~---~~~~~ls~~e-al~~aT~~~A~~lg~ 429 (538)
-..|. ...+...+..+ .+..|+|.++ +.++.|.||+++|++
T Consensus 284 ------~~~~~---~~~~~~~~~~l~~~a~~~Gis~ee~i~~~t~~Np~rlf~l 328 (330)
T 3pnz_A 284 ------HGPGL---EYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTF 328 (330)
T ss_dssp ------CCSTT---THHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHSSC
T ss_pred ------CCCCc---chHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHhcC
Confidence 01111 11112122222 3456799998 999999999999998
|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.4e-07 Score=87.46 Aligned_cols=248 Identities=13% Similarity=0.046 Sum_probs=129.3
Q ss_pred HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc-ccceeeeeeeeeec---CChhhHHHHHHHHHH---cC----
Q 009282 128 FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-NSCMDYGFHMAITK---WDEVVSDEMEVMVKE---KG---- 196 (538)
Q Consensus 128 ~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~g---- 196 (538)
...++.+.++||+|+++.....-......+.+..+..+ ..+...|++..... ..+...+++.++... .|
T Consensus 89 ~~~l~~~~~aGv~tiV~~t~~g~gr~~~~l~~la~~~gv~i~~~tG~y~~~~~P~~~~~~~~~~L~~~~~~ei~~Gi~~~ 168 (364)
T 3k2g_A 89 IAEVKQFAAVGGRSIVDPTCRGIGRDPVKLRRISAETGVQVVMGAGYYLASSMPETAARLSADDIADEIVAEALEGTDGT 168 (364)
T ss_dssp HHHHHHHHHTTCCEEEECCCBTTTCCHHHHHHHHHHHCCEEEECCSBCCGGGCCGGGGTCCHHHHHHHHHHHHHTCBTTB
T ss_pred HHHHHHHHhcCCCeEEEeCCCcccCCHHHHHHHHHHhCCcEEEEeCccCCCCCchhhccCCHHHHHHHHHHHHHhccccC
Confidence 34556678899999999864322223344444444433 44555666522111 111123444333211 12
Q ss_pred ---CcEEE-EEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh-hhHHHHHHHHHHcCCCCcccccccCCchHHHHH
Q 009282 197 ---INSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEA 271 (538)
Q Consensus 197 ---~~~ik-~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 271 (538)
+..++ +.+++ .......+.+++.++.|++.|+++.+|..+. ....+.++.+.+.|...
T Consensus 169 ~vkag~IGEiGld~-~~t~~q~~~f~aq~~~A~~~glPV~iH~~gr~~a~~e~l~iL~e~g~~~---------------- 231 (364)
T 3k2g_A 169 DARIGLIGEIGVSS-DFTAEEEKSLRGAARAQVRTGLPLMVHLPGWFRLAHRVLDLVEEEGADL---------------- 231 (364)
T ss_dssp SCCCSSEEEEECCT-TCCHHHHHHHHHHHHHHHHHCCCEEEECCTTSCCHHHHHHHHHHTTCCG----------------
T ss_pred CcceeEEEEEEcCC-CCCHHHHHHHHHHHHHHHHHCCeEEEecCCCCccHHHHHHHHHHcCCCC----------------
Confidence 22343 44443 1112234567788889999999999998422 22333443333333221
Q ss_pred HHHHHHHHHHcCCCEEEEeccC-HHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHH
Q 009282 272 TTRAIRLAEFVNTPLYVVHVMS-MDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNK 350 (538)
Q Consensus 272 i~~~l~~~~~~~~~~~~~h~~~-~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~ 350 (538)
.++.+.||.. ..+.+....+.+.|..+..+.......+... .+ ..|. ......
T Consensus 232 ------------~~vvi~H~~~s~~~~e~a~~~l~~G~~I~f~g~gt~~~f~~~-----------~~-~~~~--d~~ra~ 285 (364)
T 3k2g_A 232 ------------RHTVLCHMNPSHMDPVYQATLAQRGAFLEFDMIGMDFFYADQ-----------GV-QCPS--DDEVAR 285 (364)
T ss_dssp ------------GGEEECCCGGGTTCHHHHHHHHHHTCEEEECCTTCCCEETTT-----------TE-ECCC--HHHHHH
T ss_pred ------------CceEEECCCCCCCCHHHHHHHHhCCcEEEecCCccccccccc-----------cc-cccc--HHHHHH
Confidence 2356779983 4134778888889987765532100000000 00 0000 001234
Q ss_pred HHHHHHhcCC--ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 351 ALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 351 ~l~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
.++++++.|. ++.+.||.+..+.. . + .|-.+....+..... .+...|+|.+++.++.|.||+++|+
T Consensus 286 ~l~~lv~~gp~drilleTD~p~~~~~-~-----~-----~gg~~~~~l~~~~~~-~l~~~Gis~eei~~~~~~Np~rlf~ 353 (364)
T 3k2g_A 286 AILGLADHGYLDRILLSHDVFVKMML-T-----R-----YGGNGYAFVTKHFLP-RLRRHGLDDAALETLMVTNPRRVFD 353 (364)
T ss_dssp HHHHHHHTTCGGGEEECCCCCSGGGS-G-----G-----GTSCTTSHHHHHHHH-HHHHTTCCHHHHHHHHTHHHHHHHC
T ss_pred HHHHHHHhCCcccEEEeCCCCCCCCC-C-----C-----CCCCCcchHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 5777888874 78999996532111 1 1 111222222222222 2234569999999999999999999
Q ss_pred CC
Q 009282 429 VY 430 (538)
Q Consensus 429 ~~ 430 (538)
+.
T Consensus 354 l~ 355 (364)
T 3k2g_A 354 AS 355 (364)
T ss_dssp TT
T ss_pred CC
Confidence 84
|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-06 Score=84.82 Aligned_cols=246 Identities=13% Similarity=-0.010 Sum_probs=127.9
Q ss_pred HHHHHHHhCCcEEEeccc-CCCCCCHHHHHHHHHHHhc-ccceeeeeeeeee--cCChhhHHHHHHHHH---HcCC----
Q 009282 129 SGQAAALAGGTTMHIDFV-IPINGSLTAGFEAYEKKAK-NSCMDYGFHMAIT--KWDEVVSDEMEVMVK---EKGI---- 197 (538)
Q Consensus 129 ~~~~~~l~~GvTt~~d~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~g~---- 197 (538)
..+..+.++||||++++. ..........+.+..+..+ ..++..|++.... .+..+..+++.++.. ..|.
T Consensus 79 ~el~~~~~aGv~tiV~~~g~~g~~r~~~~l~~la~~~gi~i~~~tG~y~~~~~P~~~~~~~~~L~~~~~~ei~~gi~~t~ 158 (365)
T 3rhg_A 79 FELNNFKELGGKTIVDATGSSSIGRDIRKLKQVAELTGINVVASSGLYIEKFEGKRLADDIDAMAKMIDDELNIGIDGTD 158 (365)
T ss_dssp HHHHHHHHTTEEEEEECCCSGGGTCCHHHHHHHHHHHCCEEECEECCCCHHHHGGGGGSCHHHHHHHHHHHHHTCSTTSS
T ss_pred HHHHHHHhcCCCeEEEcCCCCCCCCCHHHHHHHHHHHCCcEEEEeCccCCCCCchhhcCCHHHHHHHHHHHHHhccccCC
Confidence 445667889999999987 2212223334444443333 4455666652111 111002233333221 1222
Q ss_pred ---cEEE-EEeeeCCCccCCHHHHHHHHHHHHhc-CCeEEEEc-CChhhHHHHHHHHHHc-CCCCcccccccCCchHHHH
Q 009282 198 ---NSFK-FFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHA-ENGDAVFEGQKRMIEL-GITGPEGHALSRPPLLEGE 270 (538)
Q Consensus 198 ---~~ik-~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~-~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 270 (538)
..++ +.+++ .......+.+++.++.|.+. |++|.+|. .......+.++.+.+. +...
T Consensus 159 vkag~IGEiGld~-~~t~~q~~~f~aq~~~A~~~~glPV~iH~~r~~~a~~e~l~iL~e~~~~~~--------------- 222 (365)
T 3rhg_A 159 IRAGMIGEIGVSP-FFTDGEKNSLRAAALAQNNNPYASMNIHMPGWQRRGDEVLDILLTEMGCDP--------------- 222 (365)
T ss_dssp CCCCEEEEEECCT-TCCHHHHHHHHHHHHHHTTCTTCEEEEECCTTSCCHHHHHHHHTTTTCCCG---------------
T ss_pred ceeEEEEEEEcCC-CCCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCcCHHHHHHHHHhccCCCC---------------
Confidence 2343 33332 11112246677888889999 99999998 4222333444443332 2211
Q ss_pred HHHHHHHHHHHcCCCEEEEecc-CHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCc-cc
Q 009282 271 ATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GH 348 (538)
Q Consensus 271 ~i~~~l~~~~~~~~~~~~~h~~-~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~ 348 (538)
.++.+.||. +....+....+.+.|..+..+....... |.. ... . ... ..
T Consensus 223 -------------~~vvi~H~~rs~~~~e~a~~~l~~G~~I~~~g~g~~~t----------f~~-~~~--~---~~d~~~ 273 (365)
T 3rhg_A 223 -------------AKISLAHSDPSGKDIDYQCKMLDRGVWLEFDMIGLDIS----------FPK-EGA--A---PSVMDT 273 (365)
T ss_dssp -------------GGEEESCCGGGTTCHHHHHHHHHTTCEEEECCTTCCCB----------CSS-SCB--C---CCHHHH
T ss_pred -------------CceEEecCCCCCCCHHHHHHHHhCCCEEEecCCCcccc----------ccc-ccc--c---cchHHH
Confidence 135678998 4233478888888998776553210000 000 000 0 001 12
Q ss_pred HHHHHHHHhcCC--ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHH
Q 009282 349 NKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARI 426 (538)
Q Consensus 349 ~~~l~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~ 426 (538)
...+.++++.|. .+.+.||.+..++. .. . |-.+....+.... ......|+|.+++.++.|.||+++
T Consensus 274 a~~l~~li~~g~~drilleTD~p~l~~~-~~------~----G~~~~~~l~~~~~-~~~~~~Gis~e~i~~~~~~Np~rl 341 (365)
T 3rhg_A 274 VEAVATLIERGYGNQIVLSHDVFLKQMW-AK------N----GGNGWGFVPNVFL-SLLAQRGIDKTIIDKLCIDNPANL 341 (365)
T ss_dssp HHHHHHHHHTTCGGGEEECCCCCSGGGS-GG------G----TSCTTTHHHHTHH-HHHHHTTCCHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEeCCCCCCCCC-Cc------C----CCCCchhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345777888875 78999997543222 11 1 1122222222222 334455699999999999999999
Q ss_pred cCCCC
Q 009282 427 FNVYP 431 (538)
Q Consensus 427 lg~~~ 431 (538)
|++..
T Consensus 342 f~l~~ 346 (365)
T 3rhg_A 342 LAAEN 346 (365)
T ss_dssp HHSCC
T ss_pred HCCCC
Confidence 99843
|
| >1yix_A Deoxyribonuclease YCFH; TIM barrel, zinc ION, NEW YORK SGX center for structural genomics, nysgxrc; 1.90A {Escherichia coli} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-06 Score=82.81 Aligned_cols=246 Identities=17% Similarity=0.161 Sum_probs=125.1
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhccc---ceeeeeeeeeecCChh
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNS---CMDYGFHMAITKWDEV 183 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 183 (538)
+||+|+|+....... ...+.......+.++||++++.+... ....+...+..... ...++++..... ...
T Consensus 3 ~iD~H~Hl~~~~~~~-~~~~~~~~l~~~~~~Gv~~~v~~~~~-----~~~~~~~~~~~~~~p~~~~~~g~hP~~~~-~~~ 75 (265)
T 1yix_A 3 LVDSHCHLDGLDYES-LHKDVDDVLAKAAARDVKFCLAVATT-----LPSYLHMRDLVGERDNVVFSCGVHPLNQN-DPY 75 (265)
T ss_dssp EEEEEECGGGSCTTT-TCSSHHHHHHHHHHTTEEEEEECCSS-----HHHHHHHHHHHCSCTTEEEEECCCTTCCS-SCC
T ss_pred EEEEeeCCCchhhcc-cccCHHHHHHHHHHCCCCEEEEeCCC-----HHHHHHHHHHHHHCCCeEEEEEeCCCccc-ccc
Confidence 799999998651100 02234455677888999998865321 11222222222221 112222211110 001
Q ss_pred hHHHHHHHHHHcCCcEEEE-EeeeCC---CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009282 184 VSDEMEVMVKEKGINSFKF-FMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~-~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (538)
..++++++........++. .+++.. ......+.++..++.|.++|+++.+|+.... .+..+.+.+.+
T Consensus 76 ~~~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~l~~~~------- 146 (265)
T 1yix_A 76 DVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDAR--ADTLAILREEK------- 146 (265)
T ss_dssp CHHHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHTT-------
T ss_pred hHHHHHHHhccCCeEEEEccccCCCcCCCChHHHHHHHHHHHHHHHHhCCCEEEEecCch--HHHHHHHHhcC-------
Confidence 3566666653222223321 122211 1122356788899999999999999996421 12222211111
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
..+.++++ |+..... +.+..+.+.|+.+..+... .+..
T Consensus 147 ---------------------~p~~~~v~-H~~~~~~-~~~~~~~~~g~~~~~sg~~-------------~~~~------ 184 (265)
T 1yix_A 147 ---------------------VTDCGGVL-HCFTEDR-ETAGKLLDLGFYISFSGIV-------------TFRN------ 184 (265)
T ss_dssp ---------------------GGGTCEEE-TTCCSCH-HHHHHHHTTTCEEEECGGG-------------GSTT------
T ss_pred ---------------------CCCCCEEE-EcCCCCH-HHHHHHHHCCcEEEECCcc-------------ccCc------
Confidence 12345554 8865554 6666777778766544211 0000
Q ss_pred cCCCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHH
Q 009282 340 SPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~ 417 (538)
...+..+++. | -++.++||++...+. ++. |-......+......+.+..+++.+++.+
T Consensus 185 ---------~~~~~~~~~~~~~drll~~TD~P~~~~~-------~~~----g~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 244 (265)
T 1yix_A 185 ---------AEQLRDAARYVPLDRLLVETDSPYLAPV-------PHR----GKENQPAMVRDVAEYMAVLKGVAVEELAQ 244 (265)
T ss_dssp ---------CHHHHHHHHHSCGGGEEECCCBTSCCCT-------TCT----TSCCCGGGHHHHHHHHHHHHTSCHHHHHH
T ss_pred ---------hHHHHHHHHhCChHHEEEecCCCCCCCc-------ccC----CCCCchHHHHHHHHHHHHHhCcCHHHHHH
Confidence 0224455554 3 478999997533221 111 10010112333333333323599999999
Q ss_pred HHhHhHHHHcCCC
Q 009282 418 LTSTECARIFNVY 430 (538)
Q Consensus 418 ~aT~~~A~~lg~~ 430 (538)
+.+.|+++++|++
T Consensus 245 i~~~Na~rl~~l~ 257 (265)
T 1yix_A 245 VTTDNFARLFHID 257 (265)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCcC
Confidence 9999999999984
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.7e-07 Score=87.21 Aligned_cols=154 Identities=12% Similarity=0.042 Sum_probs=97.0
Q ss_pred CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHH
Q 009282 196 GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRA 275 (538)
Q Consensus 196 g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~ 275 (538)
++.++.+..+. ...+.+.+..+++.|++.|+++.+|+.+........ .+
T Consensus 161 ~vvG~dL~g~E---~~~~~~~~~~~~~~A~~~gl~~~~HagE~~~~~~i~----------------------------~a 209 (326)
T 3pao_A 161 AFIAVGLDSSE---VGHPPSKFQRVFDRARSEGFLTVAHAGEEGPPEYIW----------------------------EA 209 (326)
T ss_dssp GCSEEEEESCC---TTCCGGGGHHHHHHHHHTTCEECEEESSSSCHHHHH----------------------------HH
T ss_pred cceeeCCCCCC---CCCCHHHHHHHHHHHHHcCCceeeecCCCCCHHHHH----------------------------HH
Confidence 45565553222 234678899999999999999999995432211111 11
Q ss_pred HHHHHHcCCCEEEEeccCHHH-HHHHHHHHHcCCcEEEeccccccccCcccccCCCccccc--ceeecCCCCCcccHHHH
Q 009282 276 IRLAEFVNTPLYVVHVMSMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA--KYVMSPPIRASGHNKAL 352 (538)
Q Consensus 276 l~~~~~~~~~~~~~h~~~~~~-~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~r~~~~~~~l 352 (538)
+. .++.. .+.|+..... .+.++.++++|+.+..||.+. +.++. .+.. .++
T Consensus 210 l~---~lg~~-rigHgv~l~~d~~l~~~l~~~~i~le~cP~SN-------------~~l~~~~~~~~----------hPi 262 (326)
T 3pao_A 210 LD---LLKVE-RIDHGVRAFEDERLMRRLIDEQIPLTVCPLSN-------------TKLCVFDDMSQ----------HTI 262 (326)
T ss_dssp HH---TTCCS-SEEECGGGGGCHHHHHHHHHHTCCEEECHHHH-------------HHTTSSSSGGG----------CCH
T ss_pred Hh---cCCCc-eeeeeeeecccHHHHHHHHHcCCeEEECchhH-------------HHhCCCCCccc----------ChH
Confidence 11 12222 2678766541 278999999999999999873 22211 0111 128
Q ss_pred HHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 353 ~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
+.++++|++++++||.+..+.. .+...+..+....++++++ ++.+|.|++++..+
T Consensus 263 ~~ll~~Gv~V~l~TDdp~~~~~---------------------~l~~e~~~a~~~~~l~~~~-l~~l~~nsi~~sf~ 317 (326)
T 3pao_A 263 LDMLERGVKVTVNSDDPAYFGG---------------------YVTENFHALQQSLGMTEEQ-ARRLAQNSLDARLV 317 (326)
T ss_dssp HHHHHHTCCEEECCBSHHHHTC---------------------CHHHHHHHHHHHHCCCHHH-HHHHHHHHHHTCC-
T ss_pred HHHHHCCCeEEEeCCCcccCCC---------------------CHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHh
Confidence 8999999999999996533111 2333333344444699999 57789999988776
|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=85.19 Aligned_cols=271 Identities=14% Similarity=0.091 Sum_probs=139.8
Q ss_pred cccccccccccccCCCC--------C-hhhH---HHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHH-hcccceeee
Q 009282 106 GGIDPHTHLAMEFMGSE--------T-IDDF---FSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKK-AKNSCMDYG 172 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~--------~-~~~~---~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 172 (538)
|+..+|=|+.....+.. . .+++ ...+..+.++||+++++............+.+..+. +...++..|
T Consensus 32 G~t~~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~a~~aGv~tiV~~~~~~~~r~~~~l~~la~~~g~~i~~~tG 111 (339)
T 3gtx_A 32 GATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDATPNGCGRNPAFLREVSEATGLQILCATG 111 (339)
T ss_dssp CEEEEEEEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTEEEEEECCCTTTTCCHHHHHHHHHHHCCEEECEEC
T ss_pred CCeeeccCeeccCcccccCCCccccchHHHHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHcCCcEEEEcC
Confidence 78888888765422110 1 1122 234556788999999988632222223344444443 324455556
Q ss_pred eeeee------ecCC---hhhHHHHHHHHHH---c-----C--CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEE
Q 009282 173 FHMAI------TKWD---EVVSDEMEVMVKE---K-----G--INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (538)
Q Consensus 173 ~~~~~------~~~~---~~~~~~~~~~~~~---~-----g--~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 233 (538)
++..- ..+. ....+++.++... . | +..+++.++++.......+.+++.++.|++.|+++.+
T Consensus 112 ~hp~~~~~~~~~~~~~~~~~~~~~L~~~~~~e~~~gIg~tg~k~g~IEigld~~~~~~~q~~~f~aq~~lA~~~glPVii 191 (339)
T 3gtx_A 112 FYYEGGGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIKLASSRDAITPYEQLFFRAAARVQRETGVPIIT 191 (339)
T ss_dssp CCCTTTSSCHHHHHHHHHSCHHHHHHHHHHHHHHTCSTTSSCCCSEEEEECCSSCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCccCccCCcCCcccccccCCHHHHHHHHHHHHHhcccccCcccceEEEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEE
Confidence 55421 0100 1123444433322 1 1 3455777777533333356777888999999999999
Q ss_pred EcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEecc-CHHHHHHHHHHHHcCCcEEE
Q 009282 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVM-SMDAMEEIAKARKAGQRVIG 312 (538)
Q Consensus 234 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~-~~~~~~~i~~~~~~g~~v~~ 312 (538)
|+.......+.++.+.+.+.. ..++.+.||. +.+ .+....+.+.|..+..
T Consensus 192 H~~~gr~a~~~~~iL~~~~~~----------------------------~~~~vi~H~~~~~~-~e~a~~~l~~G~~i~~ 242 (339)
T 3gtx_A 192 HTQEGQQGPQQAELLTSLGAD----------------------------PARIMIGHMDGNTD-PAYHRETLRHGVSIAF 242 (339)
T ss_dssp ECSTTCCHHHHHHHHHHTTCC----------------------------GGGEEECCGGGCCC-HHHHHHHHTTTCEEEE
T ss_pred eCCCCcCHHHHHHHHHHcCCC----------------------------cccEEEEccCCCCC-HHHHHHHHHcCcEEEE
Confidence 994321111233333333321 1235678997 444 4778888888987765
Q ss_pred eccccccccCcccccCCCcccccceeecCCCCCc-ccHHHHHHHHhcCC--ceEEeCCCCCCChhhhhcCccCccc-CCC
Q 009282 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS-GHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRK-IPN 388 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~-~~~~~l~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~-~~~ 388 (538)
+..... .+...| .. .....+.++++.|. ++.+.||.+......... .|... ...
T Consensus 243 ~g~~t~-----------------~~~~~p---~~~~~~~~l~~li~~~~~drilleTD~p~~~~~~P~~--~p~~~~~~~ 300 (339)
T 3gtx_A 243 DRIGLQ-----------------GMVGTP---TDAERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPPA--IPEAALPAV 300 (339)
T ss_dssp CCTTCC-----------------SSTTCC---CHHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSCCC--CCGGGHHHH
T ss_pred ccCccc-----------------cccCCC---chHHHHHHHHHHHHhcCCCeEEEecCCCccccCCccc--ccccccccC
Confidence 432100 000000 00 12245677777765 779999965321000000 00000 000
Q ss_pred CCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 389 GVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 389 g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
|.++.. .+...+.......|+|.+++.++.|.||+++|+
T Consensus 301 g~n~p~-~l~~~~~~~~~~~Gis~e~i~~~~~~Np~rlf~ 339 (339)
T 3gtx_A 301 KDWHPL-HISDDILPDLRRRGITEEQVGQMTVGNPARLFG 339 (339)
T ss_dssp HTCSTT-HHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHC
T ss_pred CCCCch-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 011111 222333344455679999999999999999985
|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.4e-06 Score=81.18 Aligned_cols=266 Identities=15% Similarity=0.121 Sum_probs=136.6
Q ss_pred cccccccccccccCCC--------CCh-hh---HHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHH-HHhcccceeee
Q 009282 106 GGIDPHTHLAMEFMGS--------ETI-DD---FFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYE-KKAKNSCMDYG 172 (538)
Q Consensus 106 GlID~H~H~~~~~~~~--------~~~-~~---~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 172 (538)
|+.++|-|+...+.+. ... +. ....++.+.+.|+.|++|+....-......+.... +.+-......|
T Consensus 52 G~tl~HEHl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~Gg~tIVd~T~~g~GRd~~~l~~is~~tGv~IV~~TG 131 (360)
T 3tn4_A 52 GKTLIHEHFLFGYPGFQGDVTRGTFREDESLRVAVEAAEKMKRHGIQTVVDPTPNDCGRNPAFLRRVAEETGLNIICATG 131 (360)
T ss_dssp CSEESSCEEEECCTTGGGGTTTSCCCHHHHHHHHHHHHHHHHHTTCCEEEECCCTTTTCCHHHHHHHHHHHCCEEEEEEC
T ss_pred CCceeccCeeecChhhhcccccchhhhhhHHHHHHHHHHHHHhcCCCeEEECCCCCcCcCHHHHHHHHHHcCCCEEEeCc
Confidence 7788888875432111 111 11 12234456789999999986554432333333333 33334444555
Q ss_pred eeeeeecCC---------hhhHHHHHHHH-H--HcC-------CcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEE
Q 009282 173 FHMAITKWD---------EVVSDEMEVMV-K--EKG-------INSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMV 233 (538)
Q Consensus 173 ~~~~~~~~~---------~~~~~~~~~~~-~--~~g-------~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~ 233 (538)
++....... ....+++.++. + ..| +..+|...++..........+++..++|++.|+++.+
T Consensus 132 ~y~~~~~~p~~~~~~~~~~~~~e~l~~~~i~Ei~~Gi~~tgikaG~I~~~~~~~~~t~~E~k~frA~a~aa~etG~Pv~i 211 (360)
T 3tn4_A 132 YYYEGEGAPPYFQFRRLLGTAEDDIYDMFMAELTEGIADTGIKAGVIKLASSKGRITEYEKMFFRAAARAQKETGAVIIT 211 (360)
T ss_dssp CCCGGGSCTHHHHHHHHHTCHHHHHHHHHHHHHHTCSTTSCCCCSEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred cccCcccCCcccchhhhcccCHHHHHHHHHHHHHhccccCCCcceEEEEEccCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Confidence 554321110 00112222221 1 223 2345654433222222356678888999999999999
Q ss_pred EcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEe-ccCHHHHHHHHHHHHcCCcEEE
Q 009282 234 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH-VMSMDAMEEIAKARKAGQRVIG 312 (538)
Q Consensus 234 H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h-~~~~~~~~~i~~~~~~g~~v~~ 312 (538)
|........+.++.+.+.|+.. .++.+.| |.+.+. +..+.+.+.|..+..
T Consensus 212 Ht~~~~~~~e~l~iL~eeG~~~----------------------------~~vvi~H~~~~~d~-~~~~~~l~~G~yl~f 262 (360)
T 3tn4_A 212 HTQEGTMGPEQAAYLLEHGADP----------------------------KKIVIGHMCDNTDP-DYHRKTLAYGVYIAF 262 (360)
T ss_dssp ECSTTCCHHHHHHHHHHTTCCG----------------------------GGEEECCGGGCCCH-HHHHHHHTTTCEEEE
T ss_pred EcCcccCCHHHHHHHHHcCCCC----------------------------CceEEEcCCCCCCH-HHHHHHHHcCCEEEE
Confidence 9965543334444444444431 2467889 455443 778888889988765
Q ss_pred eccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCC--ceEEeCCCC------CCChhhhhcCccCcc
Q 009282 313 EPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHC------AFNSTQKAFGIDDFR 384 (538)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv--~~~lgtD~~------~~~~~~~~~~~~~~~ 384 (538)
+..-. ..+...|+ .....+.+..+.+.|- ++.++||.. |..... ++.
T Consensus 263 D~iG~-----------------~~~~~~p~--d~~r~~~l~~lv~~g~~drILLstDa~~~~~~~py~~p~------p~r 317 (360)
T 3tn4_A 263 DRFGI-----------------QGMVGAPT--DEERVRTLLALLRDGYEKQIMLSHDTVNVWLGRPFTLPE------PFA 317 (360)
T ss_dssp CCTTC-----------------CCSTTCCC--HHHHHHHHHHHHHTTCGGGEEECCCCEEEESSSCCCCCH------HHH
T ss_pred ccccc-----------------ccccCCCC--hHHHHHHHHHHHHhcCcceEEEecCCCcccccCCCCCcc------ccc
Confidence 43210 00000010 0112345677888765 789999952 111100 111
Q ss_pred cCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHc
Q 009282 385 KIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIF 427 (538)
Q Consensus 385 ~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~l 427 (538)
....+ .+....+...+..+ +..|+|.+++=++.+.||+++|
T Consensus 318 ~~~~~-~~y~~i~~~~ip~L-~~~Gvs~e~I~~i~~~NP~rlf 358 (360)
T 3tn4_A 318 EMMKN-WHVEHLFVNIIPAL-KNEGIRDEVLEQMFIGNPAALF 358 (360)
T ss_dssp HHTTT-CSTTHHHHTHHHHH-HHTTCCHHHHHHHHTHHHHHHH
T ss_pred ccCCC-CCchhHHHHHHHHH-HHcCCCHHHHHHHHHHhHHHHh
Confidence 11111 11111222222222 3346999999999999999987
|
| >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.7e-06 Score=79.25 Aligned_cols=233 Identities=15% Similarity=0.105 Sum_probs=130.7
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeecCChhhHH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSD 186 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (538)
|||+|+|+... ++.......+...||..+.. +. +...........+..+..+..+|++........+.++
T Consensus 3 liDtH~HL~~~-------~d~~~vl~~a~~~gV~~i~v-~~--~~~~~~~~~~la~~~~~v~~~~GiHP~~~~~~~~~l~ 72 (254)
T 3gg7_A 3 LIDFHVHLDLY-------PDPVAVARACEERQLTVLSV-TT--TPAAWRGTLALAAGRPHVWTALGFHPEVVSERAADLP 72 (254)
T ss_dssp CEEEEECGGGS-------SSHHHHHHHHHHTTCEEEEC-CS--SGGGHHHHHGGGTTCTTEEECBCCCGGGTTTTGGGTH
T ss_pred eEEEeeCCCCC-------CCHHHHHHHHHHCCCcEEEe-cC--CHHHHHHHHHHHHhCCCeEEEEeeCcccccccHHHHH
Confidence 89999999753 14455577888999997663 21 1122222222222223344455655433222224455
Q ss_pred HHHHHHHHcCCcEEE-EEeeeCCC----ccCCHHHHHHHHHHHHhcCCeEE-EEcCChhhHHHHHHHHHHcCCCCccccc
Q 009282 187 EMEVMVKEKGINSFK-FFMAYKGS----FMINDELLIEGFKRCKSLGALAM-VHAENGDAVFEGQKRMIELGITGPEGHA 260 (538)
Q Consensus 187 ~~~~~~~~~g~~~ik-~~~~~~~~----~~~~~~~l~~~~~~A~~~g~~v~-~H~~~~~~~~~~~~~~~~~g~~~~~~~~ 260 (538)
.+.++. . ...+++ +.+++.-. .....+.+++.++.|+++++++. +|+.... .+.++.+.
T Consensus 73 ~l~~~~-~-~~vaIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~lPviSiH~r~a~--~~~~~il~----------- 137 (254)
T 3gg7_A 73 WFDRYL-P-ETRFVGEVGLDGSPSLRGTWTQQFAVFQHILRRCEDHGGRILSIHSRRAE--SEVLNCLE----------- 137 (254)
T ss_dssp HHHHHG-G-GCSEEEEEECCCCGGGGGGHHHHHHHHHHHHHHHHHTTCEEEEEECTTCH--HHHHHHHH-----------
T ss_pred HHHHHh-h-hccEEEEEecCCCcccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCcH--HHHHHHHH-----------
Confidence 666655 2 234444 33444211 11235667888999999999998 9997542 22222221
Q ss_pred ccCCchHHHHHHHHHHHHHHHcCC-CEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 261 LSRPPLLEGEATTRAIRLAEFVNT-PLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 261 ~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
..+. ...+.|+.+.+. +.++.+.+.|..+..+....
T Consensus 138 --------------------~~~~~~~~v~H~fsG~~-e~a~~~l~~G~yis~~g~~~---------------------- 174 (254)
T 3gg7_A 138 --------------------ANPRSGTPILHWYSGSV-TELRRAISLGCWFSVGPTMV---------------------- 174 (254)
T ss_dssp --------------------HCGGGEEEEEETCCSCH-HHHHHHHHTTCEEEECHHHH----------------------
T ss_pred --------------------HcCCCCcEEEEeCCCCH-HHHHHHHcCCcEEEECcccC----------------------
Confidence 1111 123569887664 77888888888776543310
Q ss_pred cCCCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHH
Q 009282 340 SPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~ 417 (538)
+ ...++++++. + -++.+.||.+..+.. |-...-..+...++.+....+++.+++.+
T Consensus 175 ----~----~~~~~~~v~~ip~drlLlETD~P~~~~r--------------g~~n~P~~v~~v~~~iA~~~g~~~ee~~~ 232 (254)
T 3gg7_A 175 ----R----TQKGAALIRSMPRDRVLTETDGPFLELD--------------GQAALPWDVKSVVEGLSKIWQIPASEVER 232 (254)
T ss_dssp ----T----SHHHHHHHHHSCGGGEEECCCTTTSEET--------------TEECCGGGHHHHHHHHHHHHTSCHHHHHH
T ss_pred ----c----hHHHHHHHHHcCCCeEEEeCCCCccccC--------------CCCCCHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 0 0123444433 2 368999996532111 10000123444444444555699999999
Q ss_pred HHhHhHHHHcCC
Q 009282 418 LTSTECARIFNV 429 (538)
Q Consensus 418 ~aT~~~A~~lg~ 429 (538)
..+.|+.+++++
T Consensus 233 ~~~~N~~~lf~~ 244 (254)
T 3gg7_A 233 IVKENVSRLLGT 244 (254)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC
Confidence 999999999998
|
| >3ipw_A Hydrolase TATD family protein; niaid, ssgcid, seattle structural genomics center for infect disease, dysentery, liver abcess; 1.95A {Entamoeba histolytica hm-1} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-05 Score=77.13 Aligned_cols=261 Identities=13% Similarity=-0.034 Sum_probs=142.2
Q ss_pred cccccccccccccC-C-----CCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc-----ccceeeeee
Q 009282 106 GGIDPHTHLAMEFM-G-----SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK-----NSCMDYGFH 174 (538)
Q Consensus 106 GlID~H~H~~~~~~-~-----~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 174 (538)
-|||+|+|+..... + ....++....+..+...||..++..+... ..........+..+ ..+..+|++
T Consensus 27 ~~iDtH~HL~~~~f~g~y~gk~~h~~d~~~vl~rA~~aGV~~ii~~g~~~--~~~~~~~~La~~~~~~~~~~v~~~~GiH 104 (325)
T 3ipw_A 27 QFIDIGANLTDDNYFGNYHGKHYHEEDIDVVLQRAERNGLSHIIITSGCL--NDFKKAIEIINKYQNLTNIKLVTTIGVH 104 (325)
T ss_dssp CEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSH--HHHHHHHHHHHHHGGGCSSEEEEEECCC
T ss_pred CeEEEEECCCchHhccccccccccccCHHHHHHHHHHcCCcEEEEccCCH--HHHHHHHHHHHHCCCcccceEEEEEEEC
Confidence 49999999987621 0 01134566678889999999988664321 12222222333333 344455555
Q ss_pred eeee-cCChh-hHHHHHHHHHHc--CCcEEE-EEeeeCCCc----cCCHHHHHHHHHHHHh-cCCeEEEEcCChhhHHHH
Q 009282 175 MAIT-KWDEV-VSDEMEVMVKEK--GINSFK-FFMAYKGSF----MINDELLIEGFKRCKS-LGALAMVHAENGDAVFEG 244 (538)
Q Consensus 175 ~~~~-~~~~~-~~~~~~~~~~~~--g~~~ik-~~~~~~~~~----~~~~~~l~~~~~~A~~-~g~~v~~H~~~~~~~~~~ 244 (538)
.... ...++ .++++.+++... .+.+++ +.+++.-.. ....+.+++.++.|++ +++++.+|+.... .+.
T Consensus 105 P~~~~~~~~~~~l~~L~~l~~~~~~~vvAIGEiGLD~~~~~~~~~~~Q~~~F~~ql~lA~e~~~lPviiH~r~A~--~d~ 182 (325)
T 3ipw_A 105 PTRTNELKQEGYLDELLLLCEKNIDKVVAIGEIGLDYERLQFSDKETQLSGYRTLSILHQKYPYLPFFFHCRKSW--SDL 182 (325)
T ss_dssp GGGGGGGGSTTHHHHHHHHHHHTGGGEEEEEEEEEETTCCSSSCHHHHHHHHHHTHHHHHHCTTCCEEEEEESCH--HHH
T ss_pred cchhhcCCchHHHHHHHHHHhcCCCCEEEEEeeecCCCcCCCCCHHHHHHHHHHHHHHHHHhhCCeEEEEeCchH--HHH
Confidence 4322 12222 567777777432 344554 344543211 1224677888999999 9999999996542 233
Q ss_pred HHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcc
Q 009282 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324 (538)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 324 (538)
++.+.+.+.. ..+ .+.|+.+.+. +.++.+.+.|..+..+.+. +
T Consensus 183 l~iL~~~~~~----------------------------~~~-gViH~FsGs~-e~a~~~l~lG~yis~~G~~----~--- 225 (325)
T 3ipw_A 183 CQLNKELGYN----------------------------GCK-GVVHCFDGTE-EEMNQILNEGWDIGVTGNS----L--- 225 (325)
T ss_dssp HHHHHHTTCT----------------------------TSC-EEECSCCCCH-HHHHHHHHTTCEEEECSGG----G---
T ss_pred HHHHHhcCCC----------------------------CCc-EEEEECCCCH-HHHHHHHhcCcEEeeCccc----c---
Confidence 3333222211 112 3569987775 8888888899877655431 0
Q ss_pred cccCCCcccccceeecCCCCCcccHHHHHHHHhc--CCceEEeCCCCCCChhh-----h-hcCccCcc--cCC-C----C
Q 009282 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQ-----K-AFGIDDFR--KIP-N----G 389 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~--Gv~~~lgtD~~~~~~~~-----~-~~~~~~~~--~~~-~----g 389 (538)
. ....+ ++++. --++.+-||.+-..+.. + ....-|+. .-| . |
T Consensus 226 -------k---------------~~~~~-~~v~~iPldrlLlETDaP~l~~~~~~~~~~~~~~p~p~r~~~k~~~~~~~g 282 (325)
T 3ipw_A 226 -------Q---------------SIELL-NVMKQIPIERLHIETDCPYCGIKKTSAGFKYLKEKDFGVKVEKYQRNKYVQ 282 (325)
T ss_dssp -------S---------------SHHHH-HHHTTSCGGGEEECCCTTSCCCCTTSGGGGGCSSCCCCBCGGGCCTTSCBT
T ss_pred -------C---------------cHHHH-HHHHhCCcccEEEeCCCccccccccccchhcccccCccccccccccccccC
Confidence 0 00112 23222 22588999965432110 0 00000110 000 0 1
Q ss_pred CcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 390 VNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 390 ~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
-..--..+...++.+....+++++++.+..+.|.-++|+..
T Consensus 283 ~rNeP~~v~~v~~~iA~l~g~~~eeva~~t~~Na~~lF~~~ 323 (325)
T 3ipw_A 283 RRNEPSNIIDIAIIMSSIKHISLFEFVNKVYSNSMNMYFPT 323 (325)
T ss_dssp TCCCGGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CcCcHHHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHHhCcC
Confidence 11112234555545555557999999999999999999874
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-05 Score=78.71 Aligned_cols=141 Identities=11% Similarity=0.023 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCH
Q 009282 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (538)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~ 294 (538)
+.+..+++.|++.|+++.+|+.+........ .++ ..++.. .+.|+...
T Consensus 192 ~~f~~~f~~A~~~gl~~~~HagE~~~~~~i~----------------------------~al---~~lg~~-RIgHgv~l 239 (367)
T 3iar_A 192 PGHVQAYQEAVKSGIHRTVHAGEVGSAEVVK----------------------------EAV---DILKTE-RLGHGYHT 239 (367)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCHHHHH----------------------------HHH---HTSCCS-EEEECGGG
T ss_pred HHHHHHHHHHHHcCCeeEEecCCcCChHHHH----------------------------HHH---HccCCc-eeeeeeee
Confidence 6889999999999999999995432211111 111 122333 47888665
Q ss_pred HH-HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCCh
Q 009282 295 DA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373 (538)
Q Consensus 295 ~~-~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~ 373 (538)
.. .+.++.++++++.+..||.+. +..+..-.+ ...++..++++|++++++||.+....
T Consensus 240 ~~d~~l~~~l~~~~i~le~cP~SN-------------~~l~~~~~~--------~~hPi~~ll~~Gv~v~l~TDdp~~~~ 298 (367)
T 3iar_A 240 LEDQALYNRLRQENMHFEICPWSS-------------YLTGAWKPD--------TEHAVIRLKNDQANYSLNTDDPLIFK 298 (367)
T ss_dssp GGCHHHHHHHHHTTCEEEECHHHH-------------HHTSSSCTT--------SCCHHHHHHHTTCCEEECCBSHHHHT
T ss_pred cCCHHHHHHHHhCCcEEEECHHHH-------------HHhCCCCCc--------ccChHHHHHHCCCEEEECCCCccccC
Confidence 31 378999999999999999873 222111000 01248999999999999999643210
Q ss_pred hhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 374 TQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
..+...+..+....|+++++ |+.+|.|++++..++
T Consensus 299 ---------------------~~l~~e~~~a~~~~glt~~e-l~~l~~nsi~~sf~~ 333 (367)
T 3iar_A 299 ---------------------STLDTDYQMTKRDMGFTEEE-FKRLNINAAKSSFLP 333 (367)
T ss_dssp ---------------------CCHHHHHHHHHHHHCCCHHH-HHHHHHHHHHTSSSC
T ss_pred ---------------------CCHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHhCCC
Confidence 11333333344444699999 677799999988774
|
| >4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-05 Score=77.30 Aligned_cols=129 Identities=12% Similarity=-0.015 Sum_probs=71.2
Q ss_pred eeccccccccccccccCC-----CCC---hhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeee
Q 009282 103 VMPGGIDPHTHLAMEFMG-----SET---IDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFH 174 (538)
Q Consensus 103 v~PGlID~H~H~~~~~~~-----~~~---~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (538)
+-+++||+|+|++..-.. ... ..+.......+-+.||+.++-..........+.+....+..+..+..+.
T Consensus 23 ~p~~~iDtH~Hl~~~~~p~~~~~~~~p~~~~~~e~~l~~~~~~GV~~~V~v~~~~~~~~n~~~~~~~~~~p~r~~g~~-- 100 (294)
T 4i6k_A 23 MKMNCIDTHAHVFSTQDHSIETARYAPDYEATVQSFISHLDEHNFTHGVLVQPSFLGTNNQAMLNAIQQYPDRLKGIA-- 100 (294)
T ss_dssp --CCSEEEEECCBCTTSCCCTTCSCCCCSCBCHHHHHHHHHHTTCCEEEEECCGGGTTCCHHHHHHHHHSTTTEEEEE--
T ss_pred CCCCceEeeeEeecCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEecCcccccchHHHHHHHHHCCCeEEEEE--
Confidence 445799999999875111 000 2344555677788999987754321111111222222222222111111
Q ss_pred eeeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 175 MAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
.+... ...++++++. +.|+.++++.....+......+.+...++.|.++|+++.+|+..
T Consensus 101 -~v~P~--~~~~eL~~l~-~~gv~Gi~l~~~~~~~~~~~~~~~~~~~~~a~~~glpv~iH~~~ 159 (294)
T 4i6k_A 101 -VVQHT--TTFNELVNLK-AQGIVGVRLNLFGLNLPALNTPDWQKFLRNVESLNWQVELHAPP 159 (294)
T ss_dssp -CCCTT--CCHHHHHHHH-TTTEEEEEEECTTSCCCCSSSHHHHHHHHHHHHTTCEEEEECCH
T ss_pred -EeCCc--ccHHHHHHHH-HCCCcEEEeccCCCCCCCcccHHHHHHHHHHHHcCCEEEEeeCc
Confidence 11111 1235566665 55888888644222222346789999999999999999999864
|
| >2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.1e-05 Score=75.82 Aligned_cols=261 Identities=11% Similarity=-0.034 Sum_probs=127.5
Q ss_pred cccccccccccccCCC------CChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcc---cceeeeeeee
Q 009282 106 GGIDPHTHLAMEFMGS------ETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN---SCMDYGFHMA 176 (538)
Q Consensus 106 GlID~H~H~~~~~~~~------~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 176 (538)
.+||+|+|+....... ....+.......+.++||++++.++.. . ...+...+.... .+..+|++..
T Consensus 2 ~~iD~H~Hl~~~~~~~~~~~~~~h~~d~~~vl~~~~~~GV~~~v~~~~~----~-~~~~~~~~la~~~~~v~~~~GiHP~ 76 (301)
T 2xio_A 2 KFIDIGINLTDPMFRGIYRGVQKHQDDLQDVIGRAVEIGVKKFMITGGN----L-QDSKDALHLAQTNGMFFSTVGCHPT 76 (301)
T ss_dssp CEEEEEECTTCGGGGTEETTEECSCCCHHHHHHHHHHHTEEEEEECCCS----H-HHHHHHHHHHTTCTTEEEEECCCGG
T ss_pred eEEEEcCCCCChHhcccccccccCccCHHHHHHHHHHCCCCEEEEeCCC----H-HHHHHHHHHHHHCCCEEEEEEECcC
Confidence 4899999997652110 011345555777889999999877432 1 122222222222 2223333321
Q ss_pred ee-cC----ChhhHHHHHHHHHHc--CCcEEE-EEeeeCC----CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHH
Q 009282 177 IT-KW----DEVVSDEMEVMVKEK--GINSFK-FFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEG 244 (538)
Q Consensus 177 ~~-~~----~~~~~~~~~~~~~~~--g~~~ik-~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~ 244 (538)
.. .. .++.++++.+++... .+.+++ +.+++.- ......+.+++.++.|.++|+++.+|+.+. ..+.
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~aIGEiGLd~~~~~~~~~~~Q~~~f~~ql~lA~~~~lPv~iH~r~a--~~~~ 154 (301)
T 2xio_A 77 RCGEFEKNNPDLYLKELLNLAENNKGKVVAIGECGLDFDRLQFCPKDTQLKYFEKQFELSEQTKLPMFLHCRNS--HAEF 154 (301)
T ss_dssp GTHHHHHHCHHHHHHHHHHHHHTCTTTEEEEEEEEEETTCTTTSCHHHHHHHHHHTHHHHHHHCCCEEEEEESC--HHHH
T ss_pred hhhhCcccccHHHHHHHHHHHhcCCCCeEEEEEeeCCCCcCCCCCHHHHHHHHHHHHHHHHHhCCcEEEEecCc--hHHH
Confidence 11 00 012355666665332 334443 2344321 011123677888999999999999999542 1222
Q ss_pred HHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcc
Q 009282 245 QKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDS 324 (538)
Q Consensus 245 ~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~ 324 (538)
++.+.+.+ . .....+.|+...+. +.++.+.+.|+.+..+... +
T Consensus 155 ~~il~~~~----------------------------~-~~~~~i~H~f~g~~-~~~~~~l~~g~yi~~~g~~----~--- 197 (301)
T 2xio_A 155 LDITKRNR----------------------------D-RCVGGVVHSFDGTK-EAAAALIDLDLYIGFNGCS----L--- 197 (301)
T ss_dssp HHHHHHTG----------------------------G-GSSCEEETTCCCCH-HHHHHHHHTTCEEEECGGG----S---
T ss_pred HHHHHhcc----------------------------C-CCCcEEEEccCCCH-HHHHHHHhcCcEEEEcccc----c---
Confidence 22221111 0 11124689866544 6777777788766544221 0
Q ss_pred cccCCCcccccceeecCCCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhh-----hhcC---c---cCcccCCC-CC
Q 009282 325 WLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQ-----KAFG---I---DDFRKIPN-GV 390 (538)
Q Consensus 325 ~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~-----~~~~---~---~~~~~~~~-g~ 390 (538)
. . ....++++. + -++.++||.+-..... +.+. . .++...+. |.
T Consensus 198 -------~---------~-------~~~~~~~~~~p~drlLleTD~P~~~~~~~~~~~~~l~~~~p~~~~~~~g~~~~~~ 254 (301)
T 2xio_A 198 -------K---------T-------EANLEVLKSIPSEKLMIETDAPWCGVKSTHAGSKYIRTAFPTKKKWESGHCLKDR 254 (301)
T ss_dssp -------S---------S-------HHHHHHHHTSCGGGEEECCCTTSCCCCTTSTTGGGCCCCCCEESSCCTTSEETTC
T ss_pred -------C---------C-------hHHHHHHHhCChHHEEEecCCCcccccccccccccccccCcccccccccccCCCC
Confidence 0 0 011234443 2 4689999965322100 0000 0 00000000 00
Q ss_pred cchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 391 NGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 391 ~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
+. -..+......+....|++.+++.+..+.|++++|++. .+|.
T Consensus 255 n~-p~~v~~~~~~ia~l~g~~~e~~~~~~~~Na~rlf~~~-~~~~ 297 (301)
T 2xio_A 255 NE-PCHIIQILEIMSAVRDEDPLELANTLYNNTIKVFFPV-IAEN 297 (301)
T ss_dssp CC-GGGHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCCC-----
T ss_pred CC-hHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhCch-hhhh
Confidence 11 1122233323333236999999999999999999984 3554
|
| >2gzx_A Putative TATD related DNAse; deoxyribonuclease, NESG, ZR237, structural GENO PSI, protein structure initiative; 2.20A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.5e-05 Score=72.71 Aligned_cols=244 Identities=16% Similarity=0.107 Sum_probs=122.6
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee-ecCChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (538)
+||+|+|++.... ..+.......+.+.||+.++...... ...+.+....+..+.....++++... ....++..
T Consensus 2 ~iD~H~Hl~~~~~----~~~~~~~l~~~~~~Gv~~~v~~~~~~--~~~~~~~~~~~~~p~~~~~~g~~P~~~~~~~~~~~ 75 (265)
T 2gzx_A 2 LIDTHVHLNDEQY----DDDLSEVITRAREAGVDRMFVVGFNK--STIERAMKLIDEYDFLYGIIGWHPVDAIDFTEEHL 75 (265)
T ss_dssp CEEEEECTTSGGG----TTTHHHHHHHHHHTTCCEEEEEECSH--HHHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred eEEEeeCCCCccc----ccCHHHHHHHHHHcCCCEEEEeCCCH--HHHHHHHHHHHhCCCEEEEEEeccCccccCCHHHH
Confidence 6999999976511 12344446677889999887654321 11222222222222211122222111 11122345
Q ss_pred HHHHHHHHHcCCcEEEEE-eeeC---CCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVKEKGINSFKFF-MAYK---GSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~~~g~~~ik~~-~~~~---~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
+++.++....+..+++.. +++. .......+.++..++.|.++|+++.+|+.... .+..+.
T Consensus 76 ~~l~~~~~~~~~~~iGe~Gl~~~~~~~~~~~~~~~~~~~~~~a~~~~~pv~iH~~~~~--~~~~~~-------------- 139 (265)
T 2gzx_A 76 EWIESLAQHPKVIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKRLKLPIIIHNREAT--QDCIDI-------------- 139 (265)
T ss_dssp HHHHHHTTSTTEEEEEEEEEECSCCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHH--------------
T ss_pred HHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEecccH--HHHHHH--------------
Confidence 666665532233344321 2221 11123456788999999999999999995431 122211
Q ss_pred cCCchHHHHHHHHHHHHHHHc---CCCEEEEeccCHHHHHHHHHHHH-cCCcEEEeccccccccCcccccCCCcccccce
Q 009282 262 SRPPLLEGEATTRAIRLAEFV---NTPLYVVHVMSMDAMEEIAKARK-AGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKY 337 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~---~~~~~~~h~~~~~~~~~i~~~~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (538)
.... ..+++ .|+..... +.+..+.+ .|+.+..+... .+.
T Consensus 140 -----------------l~~~p~~~~~~i-~H~~~g~~-~~~~~~l~~~~~y~~~sg~~-------------~~~----- 182 (265)
T 2gzx_A 140 -----------------LLEEHAEEVGGI-MHSFSGSP-EIADIVTNKLNFYISLGGPV-------------TFK----- 182 (265)
T ss_dssp -----------------HHHTTGGGTCEE-ETTCCSCH-HHHHHHHHTSCCEEEECGGG-------------GCS-----
T ss_pred -----------------HHhcCCCCCcEE-EEcCCCCH-HHHHHHHHHCCceEEeccee-------------ecC-----
Confidence 2222 24554 57654332 44555555 67655433211 000
Q ss_pred eecCCCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHH
Q 009282 338 VMSPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDY 415 (538)
Q Consensus 338 ~~~p~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~ea 415 (538)
.+ ..+..+++. | -++.++||++...+. ++. |.......+......+....++|.++.
T Consensus 183 ---~~-------~~~~~~i~~~~~dril~gSD~P~~~~~-------~~~----g~~~~~~~~~~~~~~l~~~~~~~~~~~ 241 (265)
T 2gzx_A 183 ---NA-------KQPKEVAKHVSMERLLVETDAPYLSPH-------PYR----GKRNEPARVTLVAEQIAELKGLSYEEV 241 (265)
T ss_dssp ---SC-------CHHHHHHHHSCTTTEEECCCTTSCCCT-------TCT----TSCCCGGGHHHHHHHHHHHTTCCHHHH
T ss_pred ---Cc-------HHHHHHHHhCChhhEEEccCCCCCCCc-------ccC----CCCCChHHHHHHHHHHHHHhCCCHHHH
Confidence 00 124444444 3 589999997533221 111 111112233333333334346999999
Q ss_pred HHHHhHhHHHHcCCC
Q 009282 416 VRLTSTECARIFNVY 430 (538)
Q Consensus 416 l~~aT~~~A~~lg~~ 430 (538)
-+..+.|+++++++.
T Consensus 242 ~~i~~~Na~rl~~~~ 256 (265)
T 2gzx_A 242 CEQTTKNAEKLFNLN 256 (265)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCc
Confidence 999999999999984
|
| >1j6o_A TATD-related deoxyribonuclease; structural genomics, TM0667, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.80A {Thermotoga maritima} SCOP: c.1.9.12 | Back alignment and structure |
|---|
Probab=98.34 E-value=8.8e-06 Score=77.12 Aligned_cols=246 Identities=16% Similarity=0.123 Sum_probs=124.9
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeee-ecCChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAI-TKWDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 185 (538)
++|+|+|+.... ...+.......+.++||+.++.+... ....+.+....+..+..+..+|++... ....++.+
T Consensus 13 ~~~~~~hl~~~~----~~~~~~~~l~~~~~~GV~~~v~~~~~--~~~~~~~~~l~~~~p~i~~~~G~hP~~~~~~~~~~~ 86 (268)
T 1j6o_A 13 MVDTHAHLHFHQ----FDDDRNAVISSFEENNIEFVVNVGVN--LEDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPEDFI 86 (268)
T ss_dssp EEEEEECTTSGG----GTTTHHHHHHTTTTTTEEEEEEECSS--HHHHHHHHHHHTTCTTEEEEECCCGGGGGGCCTTHH
T ss_pred ccccccCCCChh----hccCHHHHHHHHHHcCCCEEEEeCCC--HHHHHHHHHHHHHCCCEEEEEeeccccccccCHHHH
Confidence 689999997651 12334444666778999988876432 111122222222222222223332211 11223445
Q ss_pred HHHHHHHHHcCCcEEEE-EeeeCC---CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVKEKGINSFKF-FMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~~~g~~~ik~-~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
+++.++........++. .+++.- ......+.++..++.|.++|+++.+|+.... ...++.+.+.+.
T Consensus 87 ~~l~~~~~~~~~~~iGe~Gld~~~~~~~~~~q~~~f~~~~~~a~~~~lPv~iH~~~~~--~~~~~il~~~p~-------- 156 (268)
T 1j6o_A 87 EHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAY--SEAYEILRTESL-------- 156 (268)
T ss_dssp HHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHSCC--------
T ss_pred HHHHHHhccCCEEEEEccccCCcccCCChHHHHHHHHHHHHHHHHhCCCEEEEeCchH--HHHHHHHHhcCC--------
Confidence 66666552222223321 123211 1123467788999999999999999985321 122222211110
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
...++++ |+..... +.+..+.+.|+.+..+... .+ .
T Consensus 157 --------------------~~~~~I~-H~~~g~~-~~~~~~~~~g~y~~~sg~~-------------------~~--~- 192 (268)
T 1j6o_A 157 --------------------PEKRGVI-HAFSSDY-EWAKKFIDLGFLLGIGGPV-------------------TY--P- 192 (268)
T ss_dssp --------------------CSSCEEE-TTCCSCH-HHHHHHHHHTEEEEECGGG-------------------GC--T-
T ss_pred --------------------CCCCEEE-EcCCCCH-HHHHHHHHCCCeEEecccc-------------------cc--c-
Confidence 0345666 9866554 6666666667555433211 00 0
Q ss_pred CCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHH
Q 009282 342 PIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~a 419 (538)
....++.+++. | -++.++||++...+. ++....+. -..+......+....++|.++.-+..
T Consensus 193 ------~~~~l~~~i~~~~~driL~eTD~P~~~~~-------~~~g~~n~----p~~~~~~~~~la~~~~~~~e~~~~i~ 255 (268)
T 1j6o_A 193 ------KNEALREVVKRVGLEYIVLETDCPFLPPQ-------PFRGKRNE----PKYLKYVVETISQVLGVPEAKVDEAT 255 (268)
T ss_dssp ------TCHHHHHHHHHHCGGGEEECCCBTSCCCG-------GGTTSCCC----GGGHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------chHHHHHHHHhCChhhEEEecCCCCCCCc-------ccCCCCCc----hHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 00224444443 3 478999996533221 11100000 11233333333332359999999999
Q ss_pred hHhHHHHcCC
Q 009282 420 STECARIFNV 429 (538)
Q Consensus 420 T~~~A~~lg~ 429 (538)
+.|+++++++
T Consensus 256 ~~Na~rlf~l 265 (268)
T 1j6o_A 256 TENARRIFLE 265 (268)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHhCc
Confidence 9999999987
|
| >3cjp_A Predicted amidohydrolase, dihydroorotase family; structural genomics, protein structure initiative; 1.85A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0001 Score=69.79 Aligned_cols=51 Identities=14% Similarity=-0.012 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhc-CCeEEEEcCC
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSL-GALAMVHAEN 237 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~-g~~v~~H~~~ 237 (538)
+..++++++.++.|+.+++.+.... . ..+.+..+++.|.++ |+++.+|+..
T Consensus 102 ~~~~el~~~~~~~g~~gi~~~g~~~---~-~~~~~~~~~~~a~~~~~lpv~iH~~~ 153 (272)
T 3cjp_A 102 DTNSYIEENIVNNKLVGIGELTPAS---G-QIKSLKPIFKYSMDSGSLPIWIHAFN 153 (272)
T ss_dssp HHHHHHHHHTTTTTCSEEEEECCCT---T-CGGGGHHHHHHHHHTTCCCEEECCST
T ss_pred HHHHHHHHHHHhcCceEEEecCCCC---C-ccHHHHHHHHHHHhccCCcEEEeCCC
Confidence 4556676655457888888643221 2 667899999999999 9999999964
|
| >2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.6e-05 Score=73.62 Aligned_cols=127 Identities=10% Similarity=-0.002 Sum_probs=71.5
Q ss_pred ccccccccccccccC----C----CCChhhHHHHHHHHHhCCcEEEecccCC-CCCCHHHHHHHHHHHhcccceeeeeee
Q 009282 105 PGGIDPHTHLAMEFM----G----SETIDDFFSGQAAALAGGTTMHIDFVIP-INGSLTAGFEAYEKKAKNSCMDYGFHM 175 (538)
Q Consensus 105 PGlID~H~H~~~~~~----~----~~~~~~~~~~~~~~l~~GvTt~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (538)
+++||+|+|++.... + .....+.......+-+.||+..+-.... .........+. .+..+.-+..+.
T Consensus 12 ~~iID~H~Hl~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~GV~~~v~~~~~~~~~~n~~~~~~-~~~~p~r~~~~~--- 87 (288)
T 2ffi_A 12 LTAIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSA-LQTVPGQLRGVV--- 87 (288)
T ss_dssp CCCEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHH-HHHSTTTBCCBB---
T ss_pred CCceeecccccCCCCCCCCcccCCCCCCCCHHHHHHHHHHhCCCeEEEECCccccccHHHHHHH-HHHCCCCEEEEE---
Confidence 379999999976410 0 0001233444566678999977644321 11112222222 222221111111
Q ss_pred eeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 176 AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
.+... ...++++++. +.|+.++++...+.+......+.+..+++.|.++|+++.+|+...
T Consensus 88 ~v~p~--~~~~el~~~~-~~g~~Gi~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~~ 147 (288)
T 2ffi_A 88 MLERD--VEQATLAEMA-RLGVRGVRLNLMGQDMPDLTGAQWRPLLERIGEQGWHVELHRQVA 147 (288)
T ss_dssp CCCSS--CCHHHHHHHH-TTTCCEEECCCSSSCCCCTTSTTTHHHHHHHHHHTCEEEECSCTT
T ss_pred EeCCC--CCHHHHHHHH-HCCCeEEEEecccCCCCCcccHHHHHHHHHHHHCCCeEEEeechh
Confidence 11111 1135666666 568999988766543334567889999999999999999998643
|
| >2dvt_A Thermophilic reversible gamma-resorcylate decarbo; TIM barrel, lyase; 1.70A {Rhizobium SP} SCOP: c.1.9.15 PDB: 2dvu_A* 2dvx_A* 3s4t_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=5.3e-05 Score=73.94 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCC-----CccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKG-----SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
+..++++++.++.|+.++++..++.. ....+.+.+..+++.|.++|+++.+|...
T Consensus 108 ~~~~el~~~~~~~g~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~lpv~iH~~~ 167 (327)
T 2dvt_A 108 AATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN 167 (327)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred HHHHHHHHHHhcCCceEEEECCCCCCCcccCCCCCCCcchHHHHHHHHHcCCeEEECCCC
Confidence 46778888775679999988766531 23456788999999999999999999854
|
| >2f6k_A Metal-dependent hydrolase; metal dependent hydrolyse, aminohydro_2, ACMDS, ACMS, trypto metabolism, quinolinic acid, QUIN; 2.50A {Lactobacillus plantarum} SCOP: c.1.9.15 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0005 Score=66.22 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
++..++++++.++.|+.++++..++.+. ..+.+.+..+++.|.++|+++.+|....
T Consensus 103 ~~~~~el~~~~~~~g~~gi~~~~~~~~~-~~~~~~~~~~~~~a~~~~lpv~iH~~~~ 158 (307)
T 2f6k_A 103 LDAVKTVQQALDQDGALGVTVPTNSRGL-YFGSPVLERVYQELDARQAIVALHPNEP 158 (307)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESEETTE-ETTCGGGHHHHHHHHTTTCEEEEECCCC
T ss_pred HHHHHHHHHHHhccCCcEEEEeccCCCC-CCCcHhHHHHHHHHHHcCCeEEECCCCC
Confidence 4567788887756799999887776442 3456789999999999999999999643
|
| >3guw_A Uncharacterized protein AF_1765; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 3.20A {Archaeoglobus fulgidus dsm 4304} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00051 Score=64.21 Aligned_cols=161 Identities=13% Similarity=0.033 Sum_probs=86.3
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC--CHH---HHHHHHH-------HHh-cccceeeee
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--SLT---AGFEAYE-------KKA-KNSCMDYGF 173 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--~~~---~~~~~~~-------~~~-~~~~~~~~~ 173 (538)
|||+|+|+... . .+ ....+..+||+.++..+..... ... +..+... +.. ...+..+|+
T Consensus 2 ~iDtH~Hld~~--~---~~----~l~~a~~~GV~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~v~~~~Gi 72 (261)
T 3guw_A 2 YFDSHLHSEGL--G---FS----ELVKLKENGIKEVCSLAFFPVKPKYPQTMIDVFRKLTEFEPLRCEAAGVKMHPAVGI 72 (261)
T ss_dssp CCBCCCCGGGC--C---HH----HHHHHHTTSCCEECCBCCCSSCCSSHHHHHHHHHHHHHTHHHHHHTTTCEECCBCCC
T ss_pred eEEeccCCCCC--C---hH----HHHHHHHCCCcEEEEeccCccccchhhhHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
Confidence 79999999764 2 22 2566788999999876533211 111 1122211 111 123444555
Q ss_pred eeeeecCChhhHHHHHHHHHHcCCcEEE-EEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh---hhHHHHHHHHH
Q 009282 174 HMAITKWDEVVSDEMEVMVKEKGINSFK-FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG---DAVFEGQKRMI 249 (538)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~g~~~ik-~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~---~~~~~~~~~~~ 249 (538)
+..... +. .++..+..++..+.+++ +.+++. .....+.+++.++.|+++++++.+|+... ....+.++.+.
T Consensus 73 HP~~~~--~~-~~~~~~~l~~~~vvaIGEiGLD~~--~~~Q~~~f~~ql~lA~e~~lPv~iH~r~~~~~~a~~~~~~il~ 147 (261)
T 3guw_A 73 HPRCIP--PD-YEFVLGYLEEGEWVAFGEIGLELV--TDEEIEVLKSQLELAKRMDVPCIIHTPRGNKLKATRKTLEILE 147 (261)
T ss_dssp CGGGCC--TT-THHHHHHHTTSCCSCEEEEECSSC--CHHHHHHHHHHHHHHHHHTCCEEEECCSSSTTHHHHHHHHHHH
T ss_pred Cccccc--cc-HHHHHHHhCcCCeEEEEEecCCCC--hHHHHHHHHHHHHHHHHhCCeEEEEcCCCcccchHHHHHHHHH
Confidence 543221 11 12222223234555664 334442 12235678889999999999999999653 22233333332
Q ss_pred HcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEe
Q 009282 250 ELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGE 313 (538)
Q Consensus 250 ~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~ 313 (538)
+.+.. ..+..+.|++. +.++.+.+.|..+..+
T Consensus 148 ~~~~~----------------------------~~~~vi~H~~~----~~a~~~l~~G~yis~~ 179 (261)
T 3guw_A 148 SLDFP----------------------------ADLAVIDHVNF----ETLDMVLETEYWIGLT 179 (261)
T ss_dssp HTTCC----------------------------TTSEEEESCCT----TTHHHHHTSSSEEEEE
T ss_pred HcCCC----------------------------CCCEEEEeCCH----HHHHHHHhCCEEEEec
Confidence 22221 12346779832 5666777889877665
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00067 Score=66.92 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEec
Q 009282 212 INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHV 291 (538)
Q Consensus 212 ~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~ 291 (538)
.++..+...++.|++.|+++.+|+.+...-.+ .+..++. .++.. .+.|.
T Consensus 194 ~p~~~f~~~f~~ar~~Gl~~t~HAGE~~~p~~---------------------------~i~~al~---~lga~-RIgHG 242 (380)
T 4gxw_A 194 RPPELFWKAYRDARAAGFRTTAHAGEFGMPWR---------------------------NVETAVD---LLHVD-RVDHG 242 (380)
T ss_dssp CCGGGGHHHHHHHHHTTCEEEEEESCTTCCHH---------------------------HHHHHHH---TSCCS-EEEEC
T ss_pred CCHHHHHHHHHHHHHcCCCeeeeccccCCchH---------------------------HHHHHHH---HcCCc-ccccc
Confidence 45677899999999999999999954321111 1222221 11221 36665
Q ss_pred cCH-HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCC
Q 009282 292 MSM-DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (538)
Q Consensus 292 ~~~-~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~ 370 (538)
... .+.+.++.++++++++..||.+.... +.. |.. ..-..-++..+++.|++++++||.+.
T Consensus 243 ~~~~~d~~L~~~l~~~~I~lEvCP~SN~~l-------------~~v----~~~-~~~~~HP~~~l~~~Gv~vtinTDDp~ 304 (380)
T 4gxw_A 243 YTIVDNPELCARYAERGIVFTVVPTNSYYL-------------RTL----PPD-QWAERHPMRKMPGLGLKIHPNTDDPT 304 (380)
T ss_dssp GGGGGCHHHHHHHHHHTCEEEECTTCHHHH-------------HHS----CTT-THHHHCGGGGTGGGTCEEEECCBSHH
T ss_pred eeeccChHHHHHHHHhCceeEECCcchhhh-------------ccc----ccc-cccccChHHHHHHCCCeEEECCCCch
Confidence 432 22378889999999999999873221 000 000 00000126788999999999999652
Q ss_pred CChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
. + ...+...+..+....|++.+|..+ .+.|+.+...++
T Consensus 305 ~------------f---------~t~Ls~Ey~~~~~~~gls~~dl~~-l~~nsi~~sF~~ 342 (380)
T 4gxw_A 305 L------------H---------KVNPSEAWELMFSHFGFTIADLKQ-FMLNGIDGAWVD 342 (380)
T ss_dssp H------------H---------TCCHHHHHHHHHHTSCCCHHHHHH-HHHHHHHHSSSC
T ss_pred h------------h---------CCCHHHHHHHHHHHhCcCHHHHHH-HHHHHHHHHcCC
Confidence 2 1 112444444555667799999665 578888877663
|
| >3e2v_A 3'-5'-exonuclease; structural genomics, hydrolase, PSI-2, protein initiative, NEW YORK SGX research center for structural GEN nysgxrc; 1.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0035 Score=61.76 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=74.6
Q ss_pred ccccccccccccccCC------CCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcc-----cceeeee
Q 009282 105 PGGIDPHTHLAMEFMG------SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKN-----SCMDYGF 173 (538)
Q Consensus 105 PGlID~H~H~~~~~~~------~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 173 (538)
+-|||+|+|+...... ....+++...+..+...||+.++..+.... .....++ ..+..+. .+..+|+
T Consensus 12 ~~~iDih~nL~d~~f~g~y~~~~~h~~D~~~vl~rA~~~GV~~ii~~g~~l~-~s~~~~~-La~~~~~~~~~~l~~tvGv 89 (401)
T 3e2v_A 12 LKYYDIGLNLTDPMFHGIYNGKQYHPADYVKLLERAAQRHVKNALVTGSSIA-ESQSAIE-LVSSVKDLSPLKLYHTIGV 89 (401)
T ss_dssp CCEEEEEECTTSGGGGTEETTEECSCCCHHHHHHHHHHTTEEEEEECCCSHH-HHHHHHH-HHHHHTTTCSSEEEEEECC
T ss_pred CCeEEEEeCcCcHHHhhhccccccCccCHHHHHHHHHHCCCCEEEEecCCHH-HHHHHHH-HHHHCCCccccceEEEEEE
Confidence 4699999999876221 123456777788999999999886643211 1222222 2222222 2455666
Q ss_pred eeeeec-CCh------------------------------------hhHHHHHHHHHH------cCCcEEE-EEeeeCCC
Q 009282 174 HMAITK-WDE------------------------------------VVSDEMEVMVKE------KGINSFK-FFMAYKGS 209 (538)
Q Consensus 174 ~~~~~~-~~~------------------------------------~~~~~~~~~~~~------~g~~~ik-~~~~~~~~ 209 (538)
+..... ... +.++++..++.+ ..+.+++ +.+++.-.
T Consensus 90 HP~~~~e~~~~~~~~~~~~~~~~p~~d~~~~~~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~vvAIGEiGLDy~~~ 169 (401)
T 3e2v_A 90 HPCCVNEFADASQGDKASASIDNPSMDEAYNESLYAKVISNPSFAQGKLKELYDLMNQQAKPHDTSFRSIGEIGLDYDRF 169 (401)
T ss_dssp CGGGGGGGC------------------CHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHCSTTCSEEEEEEEEEETTCT
T ss_pred CcChhhhcccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHhhhhccCCcEEEEEEEeCCCCcC
Confidence 542211 111 124555555422 2234444 44565321
Q ss_pred c----cCCHHHHHHHHHHHHhc----CCeEEEEcCCh
Q 009282 210 F----MINDELLIEGFKRCKSL----GALAMVHAENG 238 (538)
Q Consensus 210 ~----~~~~~~l~~~~~~A~~~----g~~v~~H~~~~ 238 (538)
. ....+.+++.++.|.++ ++++.+|+...
T Consensus 170 ~~~~~e~Q~~~F~~QL~LA~e~~~~~~lPv~IH~R~A 206 (401)
T 3e2v_A 170 HYSSKEMQKVFFEEQLKISCLNDKLSSYPLFLHMRSA 206 (401)
T ss_dssp TTSCHHHHHHHHHHHHHHTTSSHHHHTSCEEEEEESC
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhccCCCeEEEEecch
Confidence 1 12345677888899999 99999999654
|
| >3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0031 Score=60.17 Aligned_cols=229 Identities=13% Similarity=0.015 Sum_probs=121.4
Q ss_pred HHHHHHHHHhCCcEEEecccCCCCC---CHHHHHHHHHHHhcccceeeeeeeeeecCC-hhhHHHHHHHHHHcCCcEEEE
Q 009282 127 FFSGQAAALAGGTTMHIDFVIPING---SLTAGFEAYEKKAKNSCMDYGFHMAITKWD-EVVSDEMEVMVKEKGINSFKF 202 (538)
Q Consensus 127 ~~~~~~~~l~~GvTt~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~ik~ 202 (538)
.......+-+.||+..+-....... ...+.+....+..+.-+.. ...+.... ++..+++++ ..+.|+.++++
T Consensus 49 ~e~~l~~md~~GV~~~V~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~---~~~v~p~~~~~a~~eL~~-~~~~g~~Gi~~ 124 (291)
T 3irs_A 49 LELMFEEMAAAGIEQGVCVGRNSSVLGSVSNADVAAVAKAYPDKFHP---VGSIEAATRKEAMAQMQE-ILDLGIRIVNL 124 (291)
T ss_dssp HHHHHHHHHHTTCCEEEEECCEETTTEECCHHHHHHHHHHSTTTEEE---EEECCCSSHHHHHHHHHH-HHHTTCCCEEE
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccccccccHHHHHHHHHHCCCcEEE---EEecCccCHHHHHHHHHH-HHhCCCeEEEE
Confidence 3444566678999877754332110 1223333333333321111 11222233 456778888 55889999998
Q ss_pred EeeeCC-CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHH
Q 009282 203 FMAYKG-SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281 (538)
Q Consensus 203 ~~~~~~-~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 281 (538)
...+.+ ....+.+.+..+++.|.++|+++.+|...... - .. .+ .. ...+ ..+...
T Consensus 125 ~~~~~~~~~~~~d~~~~~~~~~a~e~glpv~iH~~~~~~------------~-~~-~~--~~-----p~~~---~~v~~~ 180 (291)
T 3irs_A 125 EPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGGNAG------------P-DI-TY--TN-----PEHI---DRVLGD 180 (291)
T ss_dssp CGGGSSSCCCTTCGGGHHHHHHHHHTTCCEEEECSSSCS------------S-SG-GG--GC-----HHHH---HHHHHH
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHcCCeEEEeCCCCCC------------C-CC-cc--CC-----HHHH---HHHHHH
Confidence 755432 23356788999999999999999999964310 0 00 00 00 1122 223333
Q ss_pred -cCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhc-C
Q 009282 282 -VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALAT-G 359 (538)
Q Consensus 282 -~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~-G 359 (538)
.+.++++.|+......+.++.+.+. -++...+... + ...| ....+.++++. |
T Consensus 181 ~P~l~ivl~H~G~~~~~~~~~l~~~~-~nvy~~~Sg~-~------------------~~~~------~~~~~~~~~~~~g 234 (291)
T 3irs_A 181 FPDLTVVSSHGNWPWVQEIIHVAFRR-PNLYLSPDMY-L------------------YNLP------GHADFIQAANSFL 234 (291)
T ss_dssp CTTCCEEEEGGGTTCHHHHHHHHHHC-TTEEEECGGG-G------------------SSST------THHHHHHHHTTGG
T ss_pred CCCCEEEeecCCcccHHHHHHHHhHC-CCeEecHHHH-h------------------ccCC------CHHHHHHHHHHhC
Confidence 3678899998765432444433222 2344333210 0 0000 01223333332 3
Q ss_pred -CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCc
Q 009282 360 -ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 434 (538)
Q Consensus 360 -v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~G 434 (538)
-++.+|||++-... ...+..+... ++|.++.=+..+.|+++++++..+-|
T Consensus 235 ~drllfgSD~P~~~~------------------------~~~~~~~~~l-~l~~e~~~~i~~~NA~rl~~~~~~~~ 285 (291)
T 3irs_A 235 ADRMLFGTAYPMCPL------------------------KEYTEWFLTL-PIKPDAMEKILHGNAERLLAQAGREG 285 (291)
T ss_dssp GGTBCCCCCBTSSCH------------------------HHHHHHHHTS-SCCHHHHHHHHTHHHHHHHHHSCC--
T ss_pred cceEEEecCCCCCCH------------------------HHHHHHHHHC-CCCHHHHHHHHHHHHHHHhCcccccc
Confidence 26889999643221 1112222233 69999999999999999999966555
|
| >4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=62.66 Aligned_cols=128 Identities=9% Similarity=-0.087 Sum_probs=67.0
Q ss_pred cccccccccccc---CCCC--------ChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee
Q 009282 107 GIDPHTHLAMEF---MGSE--------TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM 175 (538)
Q Consensus 107 lID~H~H~~~~~---~~~~--------~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (538)
.||+|.|++... .... ..-........+-.+||+.++-..........+.+.... .....-.++.+
T Consensus 5 ~iD~H~H~~~~~~~~~pw~~~~~~~~~~~~~~~~ll~~~~~~GV~~~V~v~~~~~~~~n~~l~~la---~~~p~~~g~vg 81 (303)
T 4do7_A 5 RIDSHQHFWRYRAADYPWIGAGMGVLARDYLPDALHPLMHAQALGASIAVQARAGRDETAFLLELA---CDEARIAAVVG 81 (303)
T ss_dssp CEEEEECCBCCCGGGCTTCCTTCGGGSSCBCHHHHHHHHHHTTCCEEEEECCSSSHHHHHHHHHHH---TTCTTEEEEEE
T ss_pred EEeCCEecccCCCCCCCCCCCccccccCCCCHHHHHHHHHhcCCcEEEEEccCCcHHHHHHHHHHH---HhCCCeEEEEE
Confidence 399999998641 0011 011223335566789999877543221111112222222 22111122211
Q ss_pred eeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCc--cCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 176 AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSF--MINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~--~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
.......+..++++++. ..|+.+++....+.... ....+.+...++.+.++|+++.+|....
T Consensus 82 ~v~~~~~~~~~~L~~l~-~~gv~Gir~~~~~~~~~~~~~~~~~~~~~~~~~~~~glpv~ih~~~~ 145 (303)
T 4do7_A 82 WEDLRAPQLAERVAEWR-GTKLRGFRHQLQDEADVRAFVDDADFARGVAWLQANDYVYDVLVFER 145 (303)
T ss_dssp CCCTTCTTHHHHHTTCC-SSCEEEEECCGGGSSCHHHHHHCHHHHHHHHHHHHTTCEEEECCCGG
T ss_pred EeCCCCchHHHHHHHHh-hcCceEEEecCcCCCCccccccCHHHHHHHHHHHHCCCeEEEecCHH
Confidence 12222223455666655 56777777654322111 2455678899999999999999998643
|
| >2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00048 Score=72.66 Aligned_cols=101 Identities=10% Similarity=0.011 Sum_probs=65.1
Q ss_pred EEeccCHHH-HHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeC
Q 009282 288 VVHVMSMDA-MEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGT 366 (538)
Q Consensus 288 ~~h~~~~~~-~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgt 366 (538)
+.|+..... ...++.+++.++.+..||.+. ......+..- ++..++++|++++|+|
T Consensus 541 IgHGv~l~edp~Li~lla~~~I~vevCP~SN-------------~kl~~~~~~H----------Pi~~ll~~Gv~VsLgT 597 (701)
T 2a3l_A 541 IAHGINLRKSPVLQYLYYLAQIGLAMSPLSN-------------NSLFLDYHRN----------PFPVFFLRGLNVSLST 597 (701)
T ss_dssp CSCCGGGGGCHHHHHHHHHHTCCEEECHHHH-------------TTTTCCSTTC----------SHHHHHHTTCCEEECC
T ss_pred EEEEeecccCHHHHHHHHHcCCcEEECccch-------------hhhccCchHh----------HHHHHHHCCCcEEEeC
Confidence 466655433 245788999999999999973 2222222111 2889999999999999
Q ss_pred CCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 367 DHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 367 D~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
|.+...... ...+...+..+....+++..++.++ |.|++++.+++
T Consensus 598 Ddp~~~~~t------------------~~dL~~Ey~~aa~~~~ls~~dl~~l-a~Ns~~asfl~ 642 (701)
T 2a3l_A 598 DDPLQIHLT------------------KEPLVEEYSIAASVWKLSACDLCEI-ARNSVYQSGFS 642 (701)
T ss_dssp BCHHHHCCS------------------SSHHHHHHHHHHHHHTCCHHHHHHH-HHHHHHHSCCC
T ss_pred CCccccCCC------------------CcCHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHhCCC
Confidence 976432110 0012222323333346999997776 99999999985
|
| >3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.035 Score=56.53 Aligned_cols=108 Identities=14% Similarity=0.066 Sum_probs=68.0
Q ss_pred CHHHHHHHHHH--HHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEe
Q 009282 213 NDELLIEGFKR--CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (538)
Q Consensus 213 ~~~~l~~~~~~--A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h 290 (538)
+...+..+++. |++.|+++.+|+.+.... |. .+ .+.+..++. ++.. .+.|
T Consensus 307 p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~----------g~---------~~----~~~i~~Al~----Lga~-RIgH 358 (508)
T 3lgd_A 307 SLHDYKEALMIPAKDGVKLPYFFHAGETDWQ----------GT---------SI----DRNILDALM----LNTT-RIGH 358 (508)
T ss_dssp CTGGGHHHHTHHHHTTCCCCBCCEECCSSCC----------SS---------TT----TTHHHHHHH----TTCS-SEEE
T ss_pred CHHHHHHHHHHHHHHHcCCceeeecccccCC----------CC---------Cc----HHHHHHHHh----cCCc-eeee
Confidence 56678888887 889999999999543110 00 00 012333332 2322 3678
Q ss_pred ccCHH-HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCC
Q 009282 291 VMSMD-AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (538)
Q Consensus 291 ~~~~~-~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~ 369 (538)
+.... +.+.++.+++.++.+..||.+......- ..+.. .++..++++|++++++||.+
T Consensus 359 Gv~l~~dp~l~~~l~~~~I~levCP~SN~~l~~v-----------~~~~~----------hP~~~ll~~Gv~V~l~TDdp 417 (508)
T 3lgd_A 359 GFALSKHPAVRTYSWKKDIPIEVCPISNQVLKLV-----------SDLRN----------HPVATLMATGHPMVISSDDP 417 (508)
T ss_dssp CTTGGGCHHHHHHHHHTTCCEEECHHHHHHTTSC-----------SSGGG----------CTHHHHHHTTCCEEECCBSH
T ss_pred eEecCccHHHHHHHHhcCCeEEECcchHHHhCCC-----------CCccc----------ChHHHHHHCCCcEEEcCCCc
Confidence 77654 1378899999999999999973221110 01111 12889999999999999965
|
| >3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.027 Score=54.15 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
+...+++++..++.|..++++.....+ ..++.+.+..+++.+.++|+++.+|...
T Consensus 110 ~~a~~el~r~~~~~G~~Gv~l~~~~~~-~~l~d~~~~p~~~~~~e~g~pv~iH~g~ 164 (312)
T 3ij6_A 110 ESACKVISSIKDDENLVGAQIFTRHLG-KSIADKEFRPVLAQAAKLHVPLWMHPVF 164 (312)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEESEETT-EETTSTTTHHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCCceEeccCCCCC-CCCCCccHHHHHHHHHHcCCeEEEcCCC
Confidence 346778888875679999998766544 3456788999999999999999999853
|
| >3nur_A Amidohydrolase; TIM barrel; 1.75A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.19 Score=49.07 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
+...+++++..++.|..++++...+.+ ..++.+.+..+++.+.++|++|.+|....
T Consensus 141 ~~a~~El~r~~~~~G~~Gv~l~~~~~~-~~~~d~~~~p~~~~~~e~g~pV~iH~g~~ 196 (357)
T 3nur_A 141 EAAAREFERCINDLGFKGALIMGRAQD-GFLDQDKYDIIFKTAENLDVPIYLHPAPV 196 (357)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEESCBTT-BCTTSGGGHHHHHHHHHHTCCEEEECCCC
T ss_pred HHHHHHHHHHHhhcCceEEEeCCCCCC-CCCCCccHHHHHHHHHhcCCeEEEecCCC
Confidence 356788888765789999998754433 34577889999999999999999999653
|
| >3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A | Back alignment and structure |
|---|
Probab=94.43 E-value=0.7 Score=42.80 Aligned_cols=39 Identities=26% Similarity=0.163 Sum_probs=29.0
Q ss_pred ccccccccccc-cCCCCChhhHHHHHHHHHhCCcEEEecc
Q 009282 107 GIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHIDF 145 (538)
Q Consensus 107 lID~H~H~~~~-~~~~~~~~~~~~~~~~~l~~GvTt~~d~ 145 (538)
+||.|+|+..+ -.|..+.+.....++.+.+.|++.+.-+
T Consensus 1 m~D~H~H~~~~~ddG~~~~~~sl~~~~~a~~~G~~~i~~T 40 (262)
T 3qy7_A 1 MIDIHCHILPAMDDGAGDSADSIEMARAAVRQGIRTIIAT 40 (262)
T ss_dssp CEESSBCCSTTSSSSCSSHHHHHHHHHHHHHTTCCEEECC
T ss_pred CEEEeecCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 58999999753 1255566665567899999999999743
|
| >2wm1_A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; neurological disorders, metal-dependent amidohydrolase, kynurenine pathway; HET: 13P; 2.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.32 Score=47.00 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
+..+++++..++.|..++++...+.+ ...+.+.+..+++.|.++|+++.+|+..
T Consensus 124 ~a~~el~~~~~~~g~~Gv~l~~~~~~-~~l~d~~~~~~~~~~~e~~lpv~iH~~~ 177 (336)
T 2wm1_A 124 LAVKEMERCVKELGFPGVQIGTHVNE-WDLNAQELFPVYAAAERLKCSLFVHPWD 177 (336)
T ss_dssp HHHHHHHHHHHTSCCSEEEEESEETT-EETTCGGGHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHccCCeEEEECCcCCC-CCCCCccHHHHHHHHHHcCCEEEECCCC
Confidence 56778888775679999998766544 3456788999999999999999999964
|
| >4inf_A Metal-dependent hydrolase; amidohydrolase, metal binding site, enzyme functi initiative, EFI; 1.48A {Novosphingobium aromaticivorans} PDB: 4ing_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=2.7 Score=41.09 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
...+++++..++.|..++++.....+ ..++.+.+..+++.+.++|++|.+|....
T Consensus 160 ~a~~EL~r~~~~~G~~Gv~l~~~~~g-~~l~d~~~~pi~~~~~e~g~pV~iH~g~~ 214 (373)
T 4inf_A 160 WSAREIHRGARELGFKGIQINSHTQG-RYLDEEFFDPIFRALVEVDQPLYIHPATS 214 (373)
T ss_dssp HHHHHHHHHHHTSCCCCEEECSCBTT-BCTTSGGGHHHHHHHHHHTCCEEECCCCC
T ss_pred HHHHHHHHHHhhcCceEEEECCCCCC-CCCCCcchHHHHHHHHHcCCeEEECCCCC
Confidence 45678888875569999998655443 34567889999999999999999999543
|
| >2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.45 Score=45.90 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
+...+++++.. +.|..++++...+.+ ..++.+.+..+++.|.++|+++.+|+..
T Consensus 127 ~~a~~el~~~~-~~g~~Gv~l~~~~~~-~~l~d~~~~p~~~~~~e~~lpv~iH~~~ 180 (334)
T 2hbv_A 127 DLACKEASRAV-AAGHLGIQIGNHLGD-KDLDDATLEAFLTHCANEDIPILVHPWD 180 (334)
T ss_dssp HHHHHHHHHHH-HHTCCCEEEESCBTT-BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred HHHHHHHHHHH-HcCCeEEEECCCCCC-CCCCcHHHHHHHHHHHHCCCEEEECCCC
Confidence 35677888888 789999988765544 3456789999999999999999999964
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 538 | ||||
| d1kcxa2 | 334 | c.1.9.6 (A:67-400) Dihydropyrimidinase related pro | 3e-77 | |
| d2ftwa2 | 334 | c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolas | 4e-77 | |
| d1ynya2 | 332 | c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR | 2e-71 | |
| d2fvka2 | 384 | c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolas | 7e-66 | |
| d1nfga2 | 330 | c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pi | 9e-66 | |
| d1gkpa2 | 335 | c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [Ta | 2e-63 | |
| d1gkra2 | 325 | c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter au | 4e-49 | |
| d1xrta2 | 310 | c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aqui | 5e-41 | |
| d2vhla2 | 301 | c.1.9.10 (A:58-358) N-acetylglucosamine-6-phosphat | 4e-25 | |
| d1kcxa1 | 142 | b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r | 5e-24 | |
| d1kcxa1 | 142 | b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase r | 7e-11 | |
| d2ftwa1 | 150 | b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid | 7e-24 | |
| d2ftwa1 | 150 | b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amid | 2e-11 | |
| d1i0da_ | 331 | c.1.9.3 (A:) Phosphotriesterase (parathion hydrola | 2e-22 | |
| d2eg6a1 | 343 | c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli | 1e-15 | |
| d1gkpa1 | 123 | b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu | 9e-15 | |
| d1gkpa1 | 123 | b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermu | 8e-11 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 3e-14 | |
| d1ynya1 | 127 | b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacill | 8e-10 | |
| d1nfga1 | 127 | b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho | 9e-14 | |
| d1nfga1 | 127 | b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkho | 9e-06 | |
| d1k1da1 | 128 | b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill | 7e-13 | |
| d1k1da1 | 128 | b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacill | 4e-08 | |
| d1onwa1 | 105 | b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidas | 1e-12 | |
| d1gkra1 | 126 | b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro | 1e-12 | |
| d1gkra1 | 126 | b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthro | 3e-08 | |
| d1xrta1 | 112 | b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorot | 1e-12 | |
| d2fvka1 | 156 | b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amid | 2e-12 | |
| d2fvka1 | 156 | b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amid | 1e-11 | |
| d2r8ca1 | 102 | b.92.1.9 (A:2-57,A:369-414) Uncharacterized protei | 2e-11 | |
| d1m7ja1 | 55 | b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolas | 2e-09 | |
| d1onwa2 | 284 | c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catal | 3e-09 | |
| d1ejxc1 | 181 | b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit o | 2e-07 | |
| d2qs8a1 | 96 | b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {A | 2e-07 | |
| d1yrra1 | 85 | b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6- | 4e-05 | |
| d2vhla1 | 91 | b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6- | 5e-05 | |
| d2p9ba1 | 118 | b.92.1.10 (A:9-70,A:395-450) Uncharacterized prote | 1e-04 |
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 244 bits (624), Expect = 3e-77
Identities = 162/333 (48%), Positives = 215/333 (64%), Gaps = 3/333 (0%)
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID +T+L G + DDFF G AALAGGTTM ID V+P G SL FE + +
Sbjct: 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEA 60
Query: 164 AKN-SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A SC DY H+ IT W + V +E+EV+V++KG+NSF+ +MAYK + ++D L E F
Sbjct: 61 ADTKSCCDYSLHVDITSWYDGVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFT 120
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
K LGA+ +VHAENGD + + QKR++E+GITGPEGHALSRP LE EA RAI +A +
Sbjct: 121 FLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRI 180
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
N P+Y+ VMS A + IA ARK G V GEP+ + L D + W ++ AA +V SPP
Sbjct: 181 NCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 240
Query: 343 IRASGHNKALQAALAT-GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401
+ +L G LQ+ G+ HC +++ QKA G D+F IP GVNGIEERM +VW
Sbjct: 241 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVW 300
Query: 402 DTMVESGQISVTDYVRLTSTECARIFNVYPRKG 434
D V +G++ +V +TST A+IFN+YPRKG
Sbjct: 301 DKAVATGKMDENQFVAVTSTNAAKIFNLYPRKG 333
|
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 244 bits (623), Expect = 4e-77
Identities = 189/333 (56%), Positives = 238/333 (71%), Gaps = 3/333 (0%)
Query: 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK 163
PGGID HTH + FMG+ ++DDF G AA+AGGTT IDFVIP G SL ++ ++K
Sbjct: 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKW 60
Query: 164 A-KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFK 222
A + DY H+AIT W E VS EME++VKE+G+NSFK FMAYK SFM+ D+ + FK
Sbjct: 61 ADEKVNCDYSLHVAITWWSEQVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFK 120
Query: 223 RCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFV 282
RCK LGA+A VHAENGD VFEGQK+M+E+GITGPEGH LSRP LE EAT RAI +A+ V
Sbjct: 121 RCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELSRPEALEAEATNRAIVIADSV 180
Query: 283 NTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342
TP+Y+VHV S+ A + I K RK G RV GEP+ +GL +D S +W+ D+ AA +VM PP
Sbjct: 181 CTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPP 240
Query: 343 IRASGHNKALQAA-LATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVW 401
IR K + LA G L VGTD+C F + QKA G DDF KIPNGVNG+E+RM +VW
Sbjct: 241 IRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVW 300
Query: 402 DTMVESGQISVTDYVRLTSTECARIFNVYPRKG 434
+ V +G+++ +VR TS+E ARIFN+YPRKG
Sbjct: 301 ENGVNTGKLTWCQFVRATSSERARIFNIYPRKG 333
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 332 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 229 bits (584), Expect = 2e-71
Identities = 152/332 (45%), Positives = 204/332 (61%), Gaps = 4/332 (1%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA 164
GGIDPHTHL M F G+ T DDFF+G AA GGTT +DF + G SL + + +KA
Sbjct: 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKA 60
Query: 165 K-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ + +DYGFH+ I + ++ V +E+E ++ +GI S K FMAYK F +DE L + +
Sbjct: 61 RGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVK 120
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
K LGAL VHAENGD + K+ + G T P HA +RPP EGEAT RAI L
Sbjct: 121 AKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAG 180
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+ LYVVHV A++ IA+AR+ G V GE L LD S + DF AKYV SPP+
Sbjct: 181 SQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDF-EGAKYVWSPPL 239
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWD 402
R + + L +AL GILQ VG+DHC FN QK G DF KIPNG IE+R+ +++
Sbjct: 240 REKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYS 299
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKG 434
V G+IS+ +V ++ST+ A++F ++PRKG
Sbjct: 300 EGVRQGRISLNQFVDISSTKAAKLFGMFPRKG 331
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 216 bits (551), Expect = 7e-66
Identities = 107/385 (27%), Positives = 171/385 (44%), Gaps = 56/385 (14%)
Query: 106 GGIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHIDF-----VIPINGSLTAGFE- 158
GGID H H+ + + +D +A+AGGTT + F +L +
Sbjct: 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKL 60
Query: 159 -AYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVM-------VKEKGINSFKFFMAYKGSF 210
E + DYG H+ + + ++ + E++ + G++S K FM Y
Sbjct: 61 DVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYP-GL 119
Query: 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGE 270
I+D ++ + G M+HAENGD V + + E G+T H +SRP ++EGE
Sbjct: 120 QISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGE 179
Query: 271 ATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330
AT RAI LA ++TP+ VHV S A E I +A+ G +V E +L D+
Sbjct: 180 ATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHH 239
Query: 331 FVT--------------------------AAKYVMSPPIRASGHNKALQAALATGILQLV 364
+KY+ SPPIR G K++ + G +V
Sbjct: 240 HGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIV 299
Query: 365 GTDHCAFNSTQKAFGID-------------DFRKIPNGVNGIEERMHLVWDTMVESGQI- 410
G+DHC++N +K +FR IPNG+ G+ RM L++D G +
Sbjct: 300 GSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLT 359
Query: 411 SVTDYVRLTSTECARIFNVYPRKGA 435
S+ V + T A+++ +YP+KG+
Sbjct: 360 SMMKLVEIQCTNPAKVYGMYPQKGS 384
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 214 bits (546), Expect = 9e-66
Identities = 135/332 (40%), Positives = 193/332 (58%), Gaps = 6/332 (1%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA 164
GGID HTH+ +++ D F + AA GGTT +DF G SL ++ A
Sbjct: 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMA 60
Query: 165 K-NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
S +DYG+H+ + + V +E+EV+ + GI SFK FMAY+G MI+D L++ +
Sbjct: 61 GGKSAIDYGYHIIVLDPTDSVIEELEVL-PDLGITSFKVFMAYRGMNMIDDVTLLKTLDK 119
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
G+L MVHAENGDA + + + G T P HALSRPP +E EAT RA+ LAE VN
Sbjct: 120 AVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN 179
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
P+Y+VHV +++EE+ +A+ G R + E L L L DF AKYV +PP
Sbjct: 180 APIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPA 238
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFN-STQKAFGIDDFRKIPNGVNGIEERMHLVWD 402
RA + L AL G+ + V +DHC++ K G +DFR IPNG G+EER+ +V+
Sbjct: 239 RAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY- 297
Query: 403 TMVESGQISVTDYVRLTSTECARIFNVYPRKG 434
V G+IS+T +V L +T A++F ++P+KG
Sbjct: 298 QGVNEGRISLTQFVELVATRPAKVFGMFPQKG 329
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 208 bits (530), Expect = 2e-63
Identities = 125/336 (37%), Positives = 188/336 (55%), Gaps = 4/336 (1%)
Query: 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK- 165
IDPH H+ + FM + D +G AAL GGTT +I+ P G++ ++ KA+
Sbjct: 2 IDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEG 61
Query: 166 NSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCK 225
NS DY FHMA++K+DE ++ +V GI+SFK F++YK F ++D + + + K
Sbjct: 62 NSYCDYTFHMAVSKFDEKTEGQLREIV-ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAK 120
Query: 226 SLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTP 285
LG + H EN + V Q++++ G TGPE H SRP +E E T R E
Sbjct: 121 ELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRPEAVEAEGTARFATFLETTGAT 180
Query: 286 LYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRA 345
YVVH+ A++ A+ G + E V+ +LD ++ A KY+MSPP+R
Sbjct: 181 GYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGV-EAMKYIMSPPLRD 239
Query: 346 SGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV 405
+ K L ALA G + VGTDHC F++ QK G + F IPNG+ IE+R++L++ V
Sbjct: 240 KRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGV 299
Query: 406 ESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSD 441
G++ + +V ST+ A++F ++PRKG I VGSD
Sbjct: 300 SRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSD 335
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 325 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 170 bits (431), Expect = 4e-49
Identities = 80/331 (24%), Positives = 137/331 (41%), Gaps = 8/331 (2%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFV--IPINGSLTAGFEAYEKK 163
G +D H H+ ++ F +A GG T I+ P +L A E ++
Sbjct: 1 GVVDEHVHI-IDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQA 59
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
+ +D+ + + +M G S ++D L E F+
Sbjct: 60 GQRLKVDFALYGGGVPGNLPEIRKMHDA-GAVGFKSMMAASVPGMFDAVSDGELFEIFQE 118
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
+ G++ +VHAEN + QK++ G + S+P E EA RA+ L +
Sbjct: 119 IAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAYEASQPVFQENEAIQRALLLQKEAG 178
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
L V+HV + D +E I +A+ GQ V E L + ++PP+
Sbjct: 179 CRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAERIGP----YMKVAPPV 234
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403
R++ N L L G++ +G+DH K G D K NG G+E + ++
Sbjct: 235 RSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTN 294
Query: 404 MVESGQISVTDYVRLTSTECARIFNVYPRKG 434
V G++S+ V + + A++F +YP+KG
Sbjct: 295 GVNKGRLSLERLVEVMCEKPAKLFGIYPQKG 325
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 148 bits (373), Expect = 5e-41
Identities = 70/326 (21%), Positives = 121/326 (37%), Gaps = 21/326 (6%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKK 163
G ID H HL G +D SG A+AGG T + P + T +K
Sbjct: 1 GFIDIHVHLRD--PGQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKS 58
Query: 164 AKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKR 223
ITK + +KE G +F GS +++ ++ + +
Sbjct: 59 KSVGLCRVLPTGTITKGRKGKEIADFYSLKEAGCVAFT----DDGSPVMDSSVMRKALEL 114
Query: 224 CKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283
LG M H E+ + +I G SR P E R LA+
Sbjct: 115 ASQLGVPIMDHCED----DKLAYGVINEGEVSALLGLSSRAPEAEEIQIARDGILAQRTG 170
Query: 284 TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343
+++ HV + ++E I ++ G ++ E + L+ + + +S A ++PP+
Sbjct: 171 GHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLNSG----ANARVNPPL 226
Query: 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDT 403
R AL + GI+ TDH + +K + G+ G++ +
Sbjct: 227 RKKEDRLALIEGVKRGIIDCFATDHAPHQTFEK----ELVEFAMPGIIGLQTALPSAL-E 281
Query: 404 MVESGQISVTDYVRLTSTECARIFNV 429
+ G IS+ + + + ARI V
Sbjct: 282 LYRKGIISLKKLIEMFTINPARIIGV 307
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 95.7 bits (238), Expect = 5e-24
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 386 IPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 445
I G I + D +E G I L + R I VGSDAD++
Sbjct: 5 IRGG-RIINDDQSFYADVYLEDGLIKQIG-ENLIVPGGVKTIEANGRMVIIAVGSDADVV 62
Query: 446 IFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 505
I++P+ ITA+SH S ++ N++EG G V I+ G++V+E+ ++V G G++I
Sbjct: 63 IWDPDKMKTITAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMGRFIP 122
Query: 506 MRPFN-YLFHGLDKAD 520
+PF +L+ +
Sbjct: 123 RKPFPEHLYQRVRIRS 138
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.0 bits (140), Expect = 7e-11
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDPHT 112
++LI+GG ++N ADVY+EDG++ + N+ V VK ++A G+ V+ G D
Sbjct: 2 RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIIAVGSDADV 61
Query: 113 HL 114
+
Sbjct: 62 VI 63
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 95.5 bits (237), Expect = 7e-24
Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 386 IPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADII 445
I NG ++R D +VE+G I + E ++ + + I VG D DI+
Sbjct: 6 IKNGTVVNDDRYF-KSDVLVENGIIKEIS-KNIEPKEGIKVVDATDKLLLIDVGCDGDIV 63
Query: 446 IFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIE 505
I++PN S I+ +HH +D N++EG +V G TI G +VW +++L+ V GSG+++
Sbjct: 64 IWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGRFVP 123
Query: 506 MRPFNYLFHGLDKADAKYLSSLQAPVKR 533
PF +F G+++ D K + L V R
Sbjct: 124 RPPFGPVFDGIEQRD-KVRNELLRKVDR 150
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} Length = 150 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Score = 60.0 bits (145), Expect = 2e-11
Identities = 35/150 (23%), Positives = 58/150 (38%), Gaps = 16/150 (10%)
Query: 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDP 110
+ ILIK GTVVN +DV VE+GI+ + NI + +KV+DAT K ++ G D
Sbjct: 1 TGTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLIDVGCDG 60
Query: 111 HTHLAMEFMGSETIDD---------FFSGQAAALAGGTTMHIDFVIPINGSLT--AGFEA 159
+ D F G TT+ ++ + L+ G
Sbjct: 61 DIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGSGR 120
Query: 160 YEKKAKNSCMDYGFHMAITKWDEVVSDEME 189
+ + I + D+V ++ +
Sbjct: 121 FVPRPPFG----PVFDGIEQRDKVRNELLR 146
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} Length = 331 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Score = 95.9 bits (237), Expect = 2e-22
Identities = 45/341 (13%), Positives = 78/341 (22%), Gaps = 39/341 (11%)
Query: 106 GGIDPHTHLAMEFMGSETIDDFFSG-------------QAAALAGGTTMHIDFVIPINGS 152
G H H+ G F G + A AG T+ I
Sbjct: 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRD 75
Query: 153 LTAGFEAYEKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMI 212
++ E + G + S E + I + +
Sbjct: 76 VSLLAEVSRAADVHIVAATGLWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIK 135
Query: 213 NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEAT 272
+ L A A TG + +GE
Sbjct: 136 VATTGKATPFQELVLKAAARASLA-----------------TGVPVTTHTAASQRDGEQQ 178
Query: 273 TRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFV 332
+ + + H D + + G + + + + + S
Sbjct: 179 AAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIGLEDNASASA-- 236
Query: 333 TAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392
+ S RA + I LV D S+ +D +G
Sbjct: 237 --LLGIRSWQTRALLIKALIDQGYMKQI--LVSNDWLFGFSSYVTNIMDVMD--RVNPDG 290
Query: 393 IEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRK 433
+ V + E G + +T T AR + R
Sbjct: 291 MAFIPLRVIPFLREKG-VPQETLAGITVTNPARFLSPTLRA 330
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} Length = 343 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Score = 76.2 bits (186), Expect = 1e-15
Identities = 34/374 (9%), Positives = 80/374 (21%), Gaps = 44/374 (11%)
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDF--VIPINGSLTAGFEAYEKKAKN 166
D H HL M + + I + P + AY ++ +
Sbjct: 11 DWHLHLRDGDMLKTVV--------PYTSEIYGRAIVMPNLAPPVTT-VEAAVAYRQRILD 61
Query: 167 SCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226
+ + S + + + F Y + N +
Sbjct: 62 AVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMP 121
Query: 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPL 286
L + + G+ + +
Sbjct: 122 --VLERMEKIGMPLLVHGEV---------THADIDIFDREARFIESVMEPLRQRLTALKV 170
Query: 287 YVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRAS 346
H+ + DA + + R +R+ L+ + + V Y + R
Sbjct: 171 VFEHITTKDAADYV---RDGNERLAATITPQHLMFNRNH-MLVGGVRPHLYCLPILKRNI 226
Query: 347 GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE 406
+ + +GTD + + G + E
Sbjct: 227 HQQALRELVASGFNRVFLGTDSAPHARHR-----KESSCGCAGCFNAPTALGSYATVFEE 281
Query: 407 SGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLD- 465
++ + S + + + I ++ +
Sbjct: 282 MN--ALQHFEAFCSVNGPQFYGLPVNDT----------FIELVREEQQVAESIALTDDTL 329
Query: 466 TNVYEGRRVKGKVE 479
G V+ V+
Sbjct: 330 VPFLAGETVRWSVK 343
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 68.8 bits (168), Expect = 9e-15
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 437 LVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNV 496
V AD+++++P I+ ++ H D N +EG + G+ V G+V + +
Sbjct: 49 YVFPGADLVVYDPQYRGTISVKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVG 108
Query: 497 VPGSGKYIEMRPFNY 511
G GK + P +
Sbjct: 109 EKGWGKLLRREPMYF 123
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Score = 57.3 bits (138), Expect = 8e-11
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
+LIK G ++ A + AD+Y E + + N+ +V+DATGK+V PG
Sbjct: 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGADLVVYD- 60
Query: 115 AMEFMGSETIDDFFS 129
++ G+ ++
Sbjct: 61 -PQYRGTISVKTQHV 74
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 67.3 bits (164), Expect = 3e-14
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 435 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDEL 494
I VGSDADI+IF+P+ ++ +HH +D N +EG V G+V ++ G V + +
Sbjct: 51 PIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRDKQF 110
Query: 495 NVVPGSGKYIEMRPFN 510
GSG+YI+ F
Sbjct: 111 VGQAGSGQYIKRTTFE 126
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Score = 54.6 bits (131), Expect = 8e-10
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
K I+GGTVV A ADV +E VVA+ ++V + +DATG +V+P +
Sbjct: 1 KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVNGA-EEIDATGCYVIPIAVGSDAD 59
Query: 114 LAMEFMG 120
+ +
Sbjct: 60 IVIFDPH 66
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 65.8 bits (160), Expect = 9e-14
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 402 DTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHH 461
D ++ G+I+ + Y I VGSDADI++++P + I + H
Sbjct: 20 DLGIKDGKITQIGGALGPAERTIDAAGRY--VFPIAVGSDADIVLWDPEAEMVIEQTAMH 77
Query: 462 SRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510
+ +D + YEG +VKG + + G+V+ + P GK+++ R +
Sbjct: 78 NAMDYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKYK 126
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} Length = 127 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Score = 43.1 bits (101), Expect = 9e-06
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHL 114
I+IK GT+V A AD+ ++DG + + + + + +DA G++V P + +
Sbjct: 3 IIIKNGTIVTADGISRADLGIKDGKITQIGGALGPAE--RTIDAAGRYVFPIAVGSDADI 60
Query: 115 AM 116
+
Sbjct: 61 VL 62
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 63.6 bits (154), Expect = 7e-13
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 402 DTMVESGQISVTDYVRLTSTECARIFNVYPRKG----AILVGSDADIIIFNPNSSFEITA 457
+++ G+I + + V KG I+VGSDAD++IF+PN I+A
Sbjct: 20 HLLIKDGKI-----AMIGQNLEEKGAEVIDAKGCYVFPIVVGSDADLVIFDPNIERVISA 74
Query: 458 RSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPF 509
+HH +D N +EG +V G+ + G V + + PG G+Y++ +
Sbjct: 75 ETHHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYLKRAKY 126
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 49.7 bits (118), Expect = 4e-08
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+IK GT+V A A + ++DG + + N+ +V+DA G +V P +
Sbjct: 2 TKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLE-EKGAEVIDAKGCYVFPIVVGSDAD 60
Query: 114 LAMEFMGSETI 124
L + E +
Sbjct: 61 LVIFDPNIERV 71
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Score = 61.9 bits (150), Expect = 1e-12
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 13/110 (11%)
Query: 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGI 108
++ L++G + + I DV V +G ++AV NI + V+D +G+ + P +
Sbjct: 6 AAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPEIL 65
Query: 109 DPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFE 158
+ + I+ A G M V + FE
Sbjct: 66 PGNDADLLVMTPELRIEQ-------VYARGKLM----VKDGKACVKGTFE 104
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 62.7 bits (152), Expect = 1e-12
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 430 YPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489
+ VGSDAD++I + + ++ A S + ++G V G +T+ G VV
Sbjct: 50 KFVMPTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVA 109
Query: 490 ENDELNVVPGSGKYIE 505
E E+ V G G+++
Sbjct: 110 EKGEVLVEQGFGQFVT 125
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Score = 50.0 bits (119), Expect = 3e-08
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG---GIDPH 111
+++K +V++ AD+ V+DG V A+ + + + + +DA GKFVMP G D
Sbjct: 4 VIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDAD 63
Query: 112 THLA-MEFMGSETIDDFFSGQAAALAGGTTMH 142
+ ++ F S + G +
Sbjct: 64 LLILDLDIDTKVDASQFRSLHKYSPFDGMPVT 95
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} Length = 112 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Score = 62.3 bits (151), Expect = 1e-12
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 385 KIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVY--PRKGAILVGSDA 442
+ + +E ++ + + + A I + + +GS A
Sbjct: 10 YVIDPSQNLEGEFDILVENGK------IKKIDKNILVPEAEIIDAKGLIVCPTLKLGSPA 63
Query: 443 DIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491
DI IF+PN + + ++ S+ G+ +KGKV TI G++V+++
Sbjct: 64 DITIFDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 112
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 63.1 bits (153), Expect = 2e-12
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV---MPGGID 109
++IK G + A A++ V +G V + +I+ +V+DA G F+ +PG D
Sbjct: 3 YDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPILPGVSD 62
Query: 110 PHTHLAMEF 118
+
Sbjct: 63 ADLVIWYPD 71
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} Length = 156 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Score = 60.8 bits (147), Expect = 1e-11
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 449 PNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRP 508
+ IT + D +EG +K TI G++V++ E+ GKY++ R
Sbjct: 78 NSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLK-RG 136
Query: 509 FNYLFHGLDKADAKY 523
+++ ++ ++
Sbjct: 137 KSFMCTPKNEWVTEW 151
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Score = 58.5 bits (141), Expect = 2e-11
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 53 SKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGID 109
+ L + G +++ H + ++ +EDG + V + V+D GK +MP +
Sbjct: 1 TTFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPRIVP 60
Query: 110 PHTHLAMEFMG 120
+ G
Sbjct: 61 GAHADVLVVDG 71
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} Length = 55 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Score = 51.3 bits (123), Expect = 2e-09
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 55 ILIKGGTVVNAHHQQI--ADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMP 105
++ GGTV++ + ADV V + AV + +D GK V P
Sbjct: 4 YILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSP 55
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Score = 55.9 bits (133), Expect = 3e-09
Identities = 41/336 (12%), Positives = 76/336 (22%), Gaps = 59/336 (17%)
Query: 106 GGIDPHTHLAME-FMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKA 164
G ID H HL T + G T +
Sbjct: 1 GFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG-------------------- 40
Query: 165 KNSCMDYGFHMAITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRC 224
+ T + + + +M + + + K
Sbjct: 41 ----------LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDV 90
Query: 225 KSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNT 284
+ + V D A L A +R L
Sbjct: 91 AIIDRVIGVKCAISDHR----------------SAAPDVYHLANMAAESRVGGLLGGKPG 134
Query: 285 PLYVVHVMSMDAMEEIAKARKAGQRVI-----GEPVVSGLVLDDSWLWHSDFVTAA-KYV 338
S A++ I + I + + + + + T
Sbjct: 135 VTVFHMGDSKKALQPIYDLLENCDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSS 194
Query: 339 MSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMH 398
+ P+ + A + +D G GV G E +
Sbjct: 195 IDEPVAPAEGIARAVQAGIPLARVTLSSDGNGSQPFFDDEGNLT----HIGVAGFETLLE 250
Query: 399 LVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 434
V +V+ S++D +R ++ A N+ KG
Sbjct: 251 TVQ-VLVKDYDFSISDALRPLTSSVAGFLNL-TGKG 284
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} Length = 181 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Score = 49.0 bits (117), Expect = 2e-07
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 16/106 (15%)
Query: 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKVLDATGKFVM 104
+++ +V+ AD+ V+DG + A+ N +G +V+ A GK V
Sbjct: 67 LVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVT 126
Query: 105 PGGIDPHTH-----LAMEFMGSETIDDFFSGQ-AAALAGGTTMHID 144
G I+ + F G + G A A G I
Sbjct: 127 AGSIEVGKLADLVVWSPAFFGVKPATVIKGGMIAIAPMGDINASIP 172
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Score = 46.9 bits (111), Expect = 2e-07
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 53 SKILIKGGTVVNAHHQQI---ADVYVEDGIVVAVQPN-INVGDDVKVLDATGKFVMPGGI 108
SK LI G +++ Q+ + ++ I+ ++ I+ D +D V+P
Sbjct: 1 SKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPSIE 60
Query: 109 DPHTHLAMEFMGSETID 125
+ G+ D
Sbjct: 61 SGKLADLIAVKGNPIED 77
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Score = 40.1 bits (93), Expect = 4e-05
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113
+ G + H V + DG++ +V P + +++ G + P
Sbjct: 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPTLAAGKVA 61
Query: 114 LAMEF-MGSETIDDFFSG 130
F + +G
Sbjct: 62 NLTAFTPDFKITKTIVNG 79
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Score = 39.8 bits (92), Expect = 1e-04
Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 54 KILIKGGTVV----NAHHQQIADVYVE-DGIVVAV--QPNINVGDDVKVLDATGKFVMPG 106
+ T+V + + V DG + V ++ + LD TGK VM
Sbjct: 5 PFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLE 64
Query: 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMH 142
L + + + AG
Sbjct: 65 VGKSADLLVLNANPLDDLRALEHPALVIAAGHPVWR 100
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| d2ftwa2 | 334 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 100.0 | |
| d1gkpa2 | 335 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 100.0 | |
| d1kcxa2 | 334 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 100.0 | |
| d1ynya2 | 332 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 100.0 | |
| d1nfga2 | 330 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 100.0 | |
| d2fvka2 | 384 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 100.0 | |
| d1gkra2 | 325 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 100.0 | |
| d1xrta2 | 310 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.97 | |
| d2eg6a1 | 343 | Dihydroorotase {Escherichia coli [TaxId: 562]} | 99.89 | |
| d2uz9a2 | 313 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 99.86 | |
| d1p1ma2 | 281 | Hypothetical protein TM0936, probable catalytic do | 99.83 | |
| d2i9ua2 | 310 | Guanine deaminase {Clostridium acetobutylicum [Tax | 99.82 | |
| d1ra0a2 | 320 | Cytosine deaminase catalytic domain {Escherichia c | 99.77 | |
| d2paja2 | 336 | Hypothetical protein GOS_1943094 {Environmental sa | 99.74 | |
| d2imra2 | 308 | Hypothetical protein DR0824 {Deinococcus radiodura | 99.67 | |
| d2puza2 | 301 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 99.66 | |
| d2bb0a2 | 300 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.64 | |
| d1onwa1 | 105 | Isoaspartyl dipeptidase {Escherichia coli [TaxId: | 99.64 | |
| d2q09a2 | 301 | Probable 4-imidazolone-5-propanoate amidohydrolase | 99.63 | |
| d1yrra1 | 85 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.63 | |
| d1i0da_ | 331 | Phosphotriesterase (parathion hydrolase, PTE) {Pse | 99.61 | |
| d2ooda2 | 325 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 99.6 | |
| d2p9ba1 | 118 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.59 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.59 | |
| d2p9ba2 | 324 | Uncharacterized protein BL1453 {Bifidobacterium lo | 99.59 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.56 | |
| d1ejxc1 | 181 | alpha-Subunit of urease {Klebsiella aerogenes [Tax | 99.51 | |
| d2r8ca2 | 311 | Uncharacterized protein EAJ56179 {Unidentified org | 99.5 | |
| d2qs8a2 | 310 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.5 | |
| d3be7a2 | 303 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.49 | |
| d4ubpc2 | 390 | alpha-subunit of urease, catalytic domain {Bacillu | 99.48 | |
| d1onwa2 | 284 | Isoaspartyl dipeptidase, catalytic domain {Escheri | 99.48 | |
| d2r8ca1 | 102 | Uncharacterized protein EAJ56179 {Unidentified org | 99.48 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 99.47 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.44 | |
| d2icsa2 | 267 | Putative adenine deaminase EF0837 {Enterococcus fa | 99.42 | |
| d2vhla2 | 301 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.41 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 99.41 | |
| d1e9yb2 | 389 | alpha-subunit of urease, catalytic domain {Helicob | 99.39 | |
| d1m7ja3 | 358 | N-acyl-D-aminoacid amidohydrolase, catalytic domai | 99.38 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 99.36 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.36 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 99.34 | |
| d2bb0a1 | 113 | Imidazolonepropionase {Bacillus subtilis [TaxId: 1 | 99.32 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.32 | |
| d1yrra2 | 297 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 99.29 | |
| d1m7ja1 | 55 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 99.24 | |
| d2paja1 | 139 | Hypothetical protein GOS_1943094 {Environmental sa | 99.21 | |
| d1gkra1 | 126 | L-hydantoinase {Arthrobacter aurescens [TaxId: 436 | 99.21 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 99.2 | |
| d2vhla1 | 91 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 99.18 | |
| d1kcxa1 | 142 | Dihydropyrimidinase related protein-1 {Mouse (Mus | 99.17 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 99.15 | |
| d1p1ma1 | 123 | Hypothetical protein TM0936 {Thermotoga maritima [ | 99.1 | |
| d2ftwa1 | 150 | Dihydropyrimidine amidohydrolase Pyd2 {Dictyosteli | 99.04 | |
| d1gkpa1 | 123 | D-hydantoinase {Thermus sp. [TaxId: 275]} | 99.03 | |
| d1nfga1 | 127 | D-hydantoinase {Burkholderia pickettii [TaxId: 329 | 99.03 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 99.01 | |
| d1ejxc2 | 385 | alpha-subunit of urease, catalytic domain {Klebsie | 98.98 | |
| d1k1da1 | 128 | D-hydantoinase {Bacillus stearothermophilus [TaxId | 98.97 | |
| d1ynya1 | 127 | D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | 98.95 | |
| d1m7ja2 | 61 | N-acyl-D-aminoacid amidohydrolase {Alcaligenes fae | 98.93 | |
| d1o12a2 | 288 | N-acetylglucosamine-6-phosphate deacetylase, NagA, | 98.86 | |
| d4ubpc1 | 180 | alpha-Subunit of urease {Bacillus pasteurii [TaxId | 98.81 | |
| d1xwya1 | 260 | Deoxyribonuclease TatD (MttC) {Escherichia coli [T | 98.69 | |
| d2i9ua1 | 109 | Guanine deaminase {Clostridium acetobutylicum [Tax | 98.67 | |
| d1yixa1 | 265 | Putative deoxyribonuclease YcfH {Escherichia coli | 98.62 | |
| d1xrta1 | 112 | Two-domain dihydroorotase {Aquifex aeolicus [TaxId | 98.58 | |
| d1zzma1 | 259 | Putative deoxyribonuclease YjjV {Escherichia coli | 98.56 | |
| d1e9yb1 | 180 | alpha-Subunit of urease {Helicobacter pylori [TaxI | 98.52 | |
| d1j6oa_ | 260 | Hypothetical protein TM0667 {Thermotoga maritima [ | 98.48 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.42 | |
| d2puza1 | 103 | Imidazolonepropionase {Agrobacterium tumefaciens [ | 98.19 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.98 | |
| d2fvka1 | 156 | Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Sacc | 97.77 | |
| d2amxa1 | 357 | Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI | 97.74 | |
| d1a4ma_ | 349 | Adenosine deaminase (ADA) {Mouse (Mus musculus) [T | 97.68 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 97.59 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 97.32 | |
| d2uz9a1 | 131 | Guanine deaminase {Human (Homo sapiens) [TaxId: 96 | 97.28 | |
| d2q09a1 | 103 | Probable 4-imidazolone-5-propanoate amidohydrolase | 97.23 | |
| d2dvta1 | 325 | Thermophilic reversible gamma-resorcylate decarbox | 97.21 | |
| d2f6ka1 | 306 | Putative amidohydrolase LP2961 {Lactobacillus plan | 96.93 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 96.46 | |
| d2icsa1 | 101 | Putative adenine deaminase EF0837 {Enterococcus fa | 95.86 | |
| d2ffia1 | 271 | Putative 2-pyrone-4,6-dicarboxylic acid hydrolase | 95.78 | |
| d1ra0a1 | 103 | Cytosine deaminase {Escherichia coli [TaxId: 562]} | 95.77 | |
| d2qs8a1 | 96 | Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: | 93.57 | |
| d1o12a1 | 76 | N-acetylglucosamine-6-phosphate deacetylase, NagA | 92.97 | |
| d3be7a1 | 95 | Zn-dependent arginine carboxypeptidase {Unidentifi | 89.14 | |
| d2ooda1 | 140 | Guanine deaminase {Bradyrhizobium japonicum [TaxId | 86.57 | |
| d2hbva1 | 331 | 2-amino-3-carboxymuconate 6-semialdehyde decarboxy | 86.31 | |
| d2gwga1 | 342 | 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas | 82.3 |
| >d2ftwa2 c.1.9.6 (A:60-393) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=100.00 E-value=1.7e-39 Score=317.99 Aligned_cols=331 Identities=57% Similarity=0.955 Sum_probs=297.6
Q ss_pred ccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCCh
Q 009282 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDE 182 (538)
Q Consensus 105 PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 182 (538)
|||||+|+|+..+..|....|++.++.++++++||||+++|....+. ...+.++...+... ...++++++.......+
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~ 80 (334)
T d2ftwa2 1 PGGIDTHTHFQLPFMGTVSVDDFDIGTQAAVAGGTTFIIDFVIPTRGQSLLEAYDQWKKWADEKVNCDYSLHVAITWWSE 80 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHTTCSSEEEEEEECCSCCH
T ss_pred CCeEcceecCCCCCCCCcccccHHHHHHHHHhCCCeEEEECCCCCCCCCcHHHHHHHHHHHhcCCcceeeEEEeecCcch
Confidence 99999999998776677788999999999999999999999765544 56666666666553 47889999988888888
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (538)
+...++..+....|+..+|+|..+......+.+.+.++++.+++.+..+.+|+++........+.+...|...+..|...
T Consensus 81 ~~~~e~~~l~~~~g~~~~k~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (334)
T d2ftwa2 81 QVSREMEILVKERGVNSFKCFMAYKNSFMVTDQEMYHIFKRCKELGAIAQVHAENGDMVFEGQKKMLEMGITGPEGHELS 160 (334)
T ss_dssp HHHHHHHHHHHHSCCCEEEEESSCTTTTBCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTHHHHHH
T ss_pred hhhHhHHHHHHhcCccccceeeccccccccccHHHHHHHHHHhhcCCceeecchhHHHHhhcchhhhccCCCCccccccc
Confidence 77888888876789999999988777677788899999999999999999999999888888888888999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCC
Q 009282 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (538)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (538)
+|...|...+.+.+.++...+.++|+.|+++...++.++..++.|.+|++++++|++.++.+.+...+...+..++++||
T Consensus 161 rp~~aE~~~v~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~G~~vt~e~~ph~L~l~~~~~~~~d~~~~~~~~~~PP 240 (334)
T d2ftwa2 161 RPEALEAEATNRAIVIADSVCTPVYIVHVQSIGAADVICKHRKEGVRVYGEPIAAGLGVDGSHMWNHDWRHAAAFVMGPP 240 (334)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTCCEEECSCCCHHHHHHHHHHHHTTCCEEECCBHHHHHCCGGGGGCSSHHHHHTTCCSSC
T ss_pred CcHHHHHHHHHHHHHHHHhhccceeeccccchhhhhhHHHhcccCCceeeccccceeeccHHHHhccchhhccceEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999887766666678899999
Q ss_pred CCCc-ccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhH
Q 009282 343 IRAS-GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421 (538)
Q Consensus 343 ~r~~-~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~ 421 (538)
+|.. ++++.+|+++..|...+++|||.|++..+|..+.++|+.+|+|++|++..++.++..++..+++|++++++..|.
T Consensus 241 lR~~~~d~~~L~~~l~~G~Id~iaSDHaPh~~e~K~~~~~~f~~a~~Gi~glet~lpll~~~~v~~g~lsl~~~v~~~s~ 320 (334)
T d2ftwa2 241 IRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVEDRMSIVWENGVNTGKLTWCQFVRATSS 320 (334)
T ss_dssp CCCCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGTTCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTH
T ss_pred ccccHhhhhhHHHHhhCCCccceecCCCCCCHHHHhcCCCChhhCCCCccCHHHHHHHHHHHHHHcCCCCHHHHHHHHhH
Confidence 9976 568999999999999999999999999999876678999999999999999999988999999999999999999
Q ss_pred hHHHHcCCCCCCcc
Q 009282 422 ECARIFNVYPRKGA 435 (538)
Q Consensus 422 ~~A~~lg~~~~~Gs 435 (538)
|||++||+.+++|+
T Consensus 321 nPAki~gL~p~KGr 334 (334)
T d2ftwa2 321 ERARIFNIYPRKGR 334 (334)
T ss_dssp HHHHHTTCTTTSSC
T ss_pred HHHHHhCCCCCCCC
Confidence 99999999888885
|
| >d1gkpa2 c.1.9.6 (A:55-389) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=100.00 E-value=1.1e-38 Score=313.43 Aligned_cols=333 Identities=38% Similarity=0.644 Sum_probs=294.4
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChhh
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEVV 184 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (538)
|||.|+|+..+..+....|+++++.++++.+||||++||..+.+. ...+.++...+.. ....++++++......+...
T Consensus 1 lID~HvH~~~p~~~~~~ked~~sgs~AAa~GGvTtv~dmpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~~ 80 (335)
T d1gkpa2 1 FIDPHVHIYLPFMATFAKDTHETGSKAALMGGTTTYIEMCCPSRNDDALEGYQLWKSKAEGNSYCDYTFHMAVSKFDEKT 80 (335)
T ss_dssp EEEEEECSSCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECCCCCTTH
T ss_pred CcCcccccCCCCCCCccccHHHHHHHHHHhCCCeEEEECCCCCCCCChHHHHHHHHHHHhcCCccceeeEEEEecccccc
Confidence 899999997764444567899999999999999999999754443 5666666655555 45889999998888888777
Q ss_pred HHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCC
Q 009282 185 SDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRP 264 (538)
Q Consensus 185 ~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 264 (538)
..++.++. ..|+..+|++..+.+.+..+...+.+.++.++..|..+.+|+++..............+...+..|...+|
T Consensus 81 ~~el~~l~-~~G~~~~k~~~~~~~~~~~d~~~l~~~~~~~~~~~~~v~~h~ed~~l~~~~~~~~~~~~~~~~~~~~~~~p 159 (335)
T d1gkpa2 81 EGQLREIV-ADGISSFKIFLSYKNFFGVDDGEMYQTLRLAKELGVIVTAHCENAELVGRLQQKLLSEGKTGPEWHEPSRP 159 (335)
T ss_dssp HHHHHHHH-HTTCCEEEEEECSTTTTBCCHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHTTCCSGGGTTTTSC
T ss_pred HHHHHHHH-hhhccccccccccCCCccCCHHHHHHHHHHhhhcCCEEEEcCCcHHHHHHHHhhhhcccccCccccccchh
Confidence 88888888 77999999999988888889999999999999999999999998877666667777888888889999999
Q ss_pred chHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCC
Q 009282 265 PLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIR 344 (538)
Q Consensus 265 ~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r 344 (538)
...+...+.+.+.++...+.++|+.|+++...++.++.++++|..++++.++|++.++++.+...+. .+..++++||+|
T Consensus 160 ~~~E~~av~r~~~la~~~~~~~hi~HiSt~~~l~~i~~ak~~g~~it~e~~~~hl~l~~~~~~~~~~-~~~~~k~~PPlR 238 (335)
T d1gkpa2 160 EAVEAEGTARFATFLETTGATGYVVHLSCKPALDAAMAAKARGVPIYIESVIPHFLLDKTYAERGGV-EAMKYIMSPPLR 238 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEECSCCSHHHHHHHHHHHHTTCCEEEEEEHHHHHCCGGGGGSCHH-HHHTTCCSSCCC
T ss_pred hhhHHHHHHHHHHHHHHhCcccchhhhhhhhhhhhhhhhhhcCceEEeecccchhhcCHHHHhcCCc-hhcceecccCCC
Confidence 9999999999999999999999999999999999999999999999999999999998876653221 124578999999
Q ss_pred CcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHH
Q 009282 345 ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECA 424 (538)
Q Consensus 345 ~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A 424 (538)
...+++.+|+++..|..++++|||.|++..+|..+..+|+..|+|++|++..+++++..++..+++|+++++++.+.|||
T Consensus 239 s~~d~~~L~~al~~G~id~i~SDHaP~~~e~K~~~~~~~~~~~~G~~gle~~lplll~~~V~~g~lsl~~~v~~~S~nPA 318 (335)
T d1gkpa2 239 DKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIEDRVNLLYTYGVSRGRLDIHRFVDAASTKAA 318 (335)
T ss_dssp CTHHHHHHHHHHHTTSSCEEECCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTSSSCCHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHhcCCccEEEecCCCCCHHHhccCCCChhhCCCChhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877778999999999999999999988899999999999999999999
Q ss_pred HHcCCCCCCcccccCCC
Q 009282 425 RIFNVYPRKGAILVGSD 441 (538)
Q Consensus 425 ~~lg~~~~~GsI~~Gk~ 441 (538)
++||+.+++|+|++|++
T Consensus 319 ri~Gl~~~KG~i~~G~D 335 (335)
T d1gkpa2 319 KLFGLFPRKGTIAVGSD 335 (335)
T ss_dssp HHTTCTTTSSSCCTTSB
T ss_pred HHhCCCCCCCeecCCCC
Confidence 99999889999999974
|
| >d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=7.6e-39 Score=313.64 Aligned_cols=331 Identities=50% Similarity=0.837 Sum_probs=294.2
Q ss_pred ccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCCh
Q 009282 105 PGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDE 182 (538)
Q Consensus 105 PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 182 (538)
|||||+|+|+..+..|....|++.++.++++++||||+++|....+. ...+.++...+.. ....++++++......++
T Consensus 1 PG~ID~HvH~reP~~G~~~kEd~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~s~~d~~~~~~~~~~~~ 80 (334)
T d1kcxa2 1 PGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYSLHVDITSWYD 80 (334)
T ss_dssp ECEEEEEECTTCEETTEECSSCHHHHHHHHHHTTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHCSSEEEEEEEECCCCT
T ss_pred CCeEeeeecCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHhcccCcceeeEeeeeccCCc
Confidence 99999999998776677788999999999999999999999755443 5566666665555 458999999998888887
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (538)
+...++..+....|+..+|+|+.+.+.+..+...+.+.++.+++.+..+.+|+++........+.+.+.|......|...
T Consensus 81 ~~~~el~~l~~~~g~~~~ki~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~H~Ed~~l~~~~~~~~~~~g~~~~~~~~~~ 160 (334)
T d1kcxa2 81 GVREELEVLVQDKGVNSFQVYMAYKDLYQMSDSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHALS 160 (334)
T ss_dssp THHHHHHHHHHTTCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHH
T ss_pred chHHHHHHHHHhccCceeeeeeccCCCcccCHHHHHHHHHHHhccCceeEEecCCHHHHhccccchhhcCCcchhhccCC
Confidence 77888888886779999999998877778889999999999999999999999998877777777888899998889999
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCC
Q 009282 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (538)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (538)
+|..+|..++.+++.++...+.++|+.|+++...++.++..++.|..++++++++++.++...+...++..+..++..||
T Consensus 161 rp~~aE~~ai~r~~~la~~~g~~~hi~HiSt~~~ve~i~~ak~~g~~vt~e~~~~~l~l~~~~~~~~~~~~~~~~~~~pP 240 (334)
T d1kcxa2 161 RPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIALARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPP 240 (334)
T ss_dssp SCTHHHHHHHHHHHHHHHHHTCCEEEEEECCHHHHHHHHHHHHHSCCEEEEEBHHHHHCCGGGGGCSSHHHHHHTCCSSC
T ss_pred CCHHHHHHHHHHHHHHHhhcCCceeeccccchHHHHHHHHHhccccceeeccchhheeecccccccCChhHhcceEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999988887766555556667777
Q ss_pred CC-CcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhH
Q 009282 343 IR-ASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTST 421 (538)
Q Consensus 343 ~r-~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~ 421 (538)
+| ..++++.+|++++.|..++++|||.|++...|..+.+.|+.+|+|++|++..++.++..++..+.+|++++++..|.
T Consensus 241 lr~~~~d~eaL~~~l~~G~Id~I~SDHaP~~~e~K~~~~~~f~~ap~Gi~g~e~~l~~llt~~V~~g~isl~~~v~~~s~ 320 (334)
T d1kcxa2 241 LSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKDNFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTST 320 (334)
T ss_dssp CCSCTTHHHHHHHHHHHTSSCCCBCCBCCCCHHHHGGGSSCGGGSCCCBCCTTTHHHHHHHHHTTTTSSCHHHHHHHHTH
T ss_pred cCchhhhHHHHHHHhhcCCcceEecCCCCCCHHHhccCCCChhhCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 76 56778999999999999999999999999999876678999999999999999999988899999999999999999
Q ss_pred hHHHHcCCCCCCcc
Q 009282 422 ECARIFNVYPRKGA 435 (538)
Q Consensus 422 ~~A~~lg~~~~~Gs 435 (538)
|||++||+.+++|+
T Consensus 321 nPA~i~gL~p~KGr 334 (334)
T d1kcxa2 321 NAAKIFNLYPRKGR 334 (334)
T ss_dssp HHHHHHTCTTTSSC
T ss_pred HHHHHhCCCCCCCC
Confidence 99999999878885
|
| >d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=100.00 E-value=1.3e-37 Score=305.11 Aligned_cols=329 Identities=46% Similarity=0.741 Sum_probs=292.1
Q ss_pred cccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhc-ccceeeeeeeeeecCChh
Q 009282 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAK-NSCMDYGFHMAITKWDEV 183 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 183 (538)
|+||+|+|+..+..|....|++.++.++++.+||||+++|....+. ...+.++...+... ...++++++......+..
T Consensus 1 G~ID~HvH~r~p~~g~~~~ed~~tgs~AAa~GGvTtv~~mpnt~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~~ 80 (332)
T d1ynya2 1 GGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQ 80 (332)
T ss_dssp CEEEEEECTTCEETTEECSCCHHHHHHHHHHTTEEEEEEEECCCSSCCHHHHHHHHHHHHTTTCSSEEEEEEECSCCCHH
T ss_pred CceeCccCCCCCCCCCcccccHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHHhccCccceeeEEEEeccccc
Confidence 8999999998765677788999999999999999999999754443 66777777666653 478899999888777777
Q ss_pred hHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccC
Q 009282 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (538)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (538)
...++..+....|+..+|+|..+.+....+.+.+.++++.+++.|..+.+|+++...+..........|...+..|...+
T Consensus 81 ~~~el~~~~~~~g~~~~k~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~h~Ed~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (332)
T d1ynya2 81 VLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTR 160 (332)
T ss_dssp HHHHHHHHHHTSCCCEEEEESCSTTTTCCCHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHHHTTCCSTTHHHHTS
T ss_pred hhHHHHHHHhhhcccceeeeeccccccccCHHHHHHHHHHHhhcCCEEeechhhHHHHHHHHHHHHhcCCCCchhccccc
Confidence 78888888877899999999887766677899999999999999999999999988777777788888999888999999
Q ss_pred CchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCC
Q 009282 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (538)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (538)
|..+|..++.+.+.++...+.++|+.|+++....+.++.+++.|..|++++++||+.++++.+...++ .+..++++||+
T Consensus 161 p~~aE~~ai~r~~~la~~~g~~~hi~hiSt~~~~~~i~~ak~~g~~vt~e~~ph~L~l~~~~~~~~~~-~g~~~k~~PPL 239 (332)
T d1ynya2 161 PPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDF-EGAKYVWSPPL 239 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEECSCCSHHHHHHHHHHHHTTCCEEEEECHHHHHCCGGGGCCSSS-GGGGGCCSSCC
T ss_pred hhhHHHHHHHHHHHhhhhhcccccccccccchHHHHHHHHHHhCCCceeccccccccCCHHHHhhhhc-cCceeEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999988865443 34678999999
Q ss_pred CCcccHHHHHHHHhcCCceEEeCCCCCCChhhh-hcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHh
Q 009282 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQK-AFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 422 (538)
Q Consensus 344 r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~-~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~ 422 (538)
|...+++++|++++.|...+++|||.|++...+ ....++|+.+|.|++|++..++..+..++..+.+|++++++..|.|
T Consensus 240 Rs~~dr~aL~~al~~G~id~i~SDHaP~~~~~kk~~~~~~f~~a~~G~~g~e~~l~~~~~~~v~~g~lsl~~~v~~~s~n 319 (332)
T d1ynya2 240 REKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTK 319 (332)
T ss_dssp CCTTHHHHHHHHHHTTSSCEECCCBCCCCTTTTGGGGTTCGGGSCCCBCCTTTHHHHHHHHTTTTTSSCHHHHHHHHTHH
T ss_pred ccHHHHHHHHHHHhcCCeeEEEecCCCCCHHHHhhccCCCcccCCCccchHHHHHHHHHHHHHHcCCCCHHHHHHHHhHH
Confidence 999999999999999999999999999986543 3345689999999999999999999888999999999999999999
Q ss_pred HHHHcCCCCCCcc
Q 009282 423 CARIFNVYPRKGA 435 (538)
Q Consensus 423 ~A~~lg~~~~~Gs 435 (538)
||++||+.+++||
T Consensus 320 PAki~GL~p~KGt 332 (332)
T d1ynya2 320 AAKLFGMFPRKGT 332 (332)
T ss_dssp HHHHTTCTTTSSS
T ss_pred HHHHhCCCCCCCC
Confidence 9999999888996
|
| >d1nfga2 c.1.9.6 (A:52-381) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=100.00 E-value=2.3e-37 Score=302.55 Aligned_cols=327 Identities=41% Similarity=0.689 Sum_probs=285.5
Q ss_pred cccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecCChh
Q 009282 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKWDEV 183 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 183 (538)
|+||.|+|+..+..+....|++.++.++|+++||||+++|....+. ...+.++...+.. ....++++++........+
T Consensus 1 G~ID~HvH~r~p~~g~~~~Ed~~tgs~AAa~GGvTtv~~mpn~~p~~~~~e~~~~~~~~a~~~s~~d~~~~~~~~~~~~~ 80 (330)
T d1nfga2 1 GGIDVHTHVETVSFNTQSADTFATATVAAACGGTTTIVDFCQQDRGHSLAEAVAKWDGMAGGKSAIDYGYHIIVLDPTDS 80 (330)
T ss_dssp CEEEEEECCSCEETTEECSCCHHHHHHHHHHTTEEEEEEEEECCTTSCHHHHHHHHHHHHTTTCSSEEEEEEECSSCCHH
T ss_pred CcEeCccCCCCCCCCccccchHHHHHHHHHcCCCEEEEECCCCCCCCCCHHHHHHHHHHHhcCCeeeecceEEEeccchh
Confidence 8999999998763455677899999999999999999999754443 5666666666655 4478899998877777776
Q ss_pred hHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccC
Q 009282 184 VSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSR 263 (538)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 263 (538)
...++..+. +.|+..+|+|+.+.+....+...+.+.++.+.+.+..+..|+++........+.+...|......|...+
T Consensus 81 ~~~el~~~~-~~Gv~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~E~~~~~~~~~~~~~~~g~~~~~~~~~~r 159 (330)
T d1nfga2 81 VIEELEVLP-DLGITSFKVFMAYRGMNMIDDVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSR 159 (330)
T ss_dssp HHHHTTTGG-GGTCCEEEEESSSTTTTBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSTHHHHHTS
T ss_pred hHHHHhhhh-hhcccceeeeccccccCCCCcHHHHHHHHHHHhcCCceeechHHHHHHHHHhhhhhccCCcCchhccccc
Confidence 667776666 7899999999988777778899999999999999999999999988777777888888999888899999
Q ss_pred CchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCC
Q 009282 264 PPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPI 343 (538)
Q Consensus 264 ~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 343 (538)
|..+|..++.+++.+++..+.++|+.|+++...++.+++++++|..|++++++|+++++++++....+ .+..++++||+
T Consensus 160 p~~aE~~av~r~~~la~~~~~~lhi~HiSt~~~~~~i~~ak~~g~~vt~Et~ph~L~l~~~d~~~~~~-~~~~~k~~PPL 238 (330)
T d1nfga2 160 PPRVEAEATARALALAEIVNAPIYIVHVTCEESLEEVMRAKSRGVRALAETCTHYLYLTKEDLERPDF-EGAKYVFTPPA 238 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHHHTCCEEECEEGGGGTCCGGGGGCTTT-GGGGGCCSSCC
T ss_pred ChHHHHHHHHHHHHHHHHhCCeeeechhcchHHHHHHHHHHhcCCcccccccchhhhhhhhhhhcccc-cCceeeecCcC
Confidence 99999999999999999999999999999999999999999999999999999999999988865333 24678999999
Q ss_pred CCcccHHHHHHHHhcCCceEEeCCCCCCChhh-hhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHh
Q 009282 344 RASGHNKALQAALATGILQLVGTDHCAFNSTQ-KAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 422 (538)
Q Consensus 344 r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~-~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~ 422 (538)
|...+++.+|++++.|...+++|||+|++... +....++|+.+|.|++|++..++.++ .++..+++|+++++++.|.|
T Consensus 239 R~~~d~~aL~~~l~dG~Id~i~SDHaP~~~~~~~~~~~~~f~~ap~G~~gle~~lp~l~-~~v~~~~l~l~~~v~~~S~n 317 (330)
T d1nfga2 239 RAKKDHDVLWNALRNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVY-QGVNEGRISLTQFVELVATR 317 (330)
T ss_dssp CCHHHHHHHHHHHHTTCCSCEECCBCCCCTTTTTTTTTTCGGGSCCCBCCTTTHHHHHH-HHHHTTSSCHHHHHHHHTHH
T ss_pred CcHHHHHHHhhhhcCCceeeecCCCCCccchhhHhhccCCHhHCCCCcCHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999987532 23334689999999999999999998 58999999999999999999
Q ss_pred HHHHcCCCCCCcc
Q 009282 423 CARIFNVYPRKGA 435 (538)
Q Consensus 423 ~A~~lg~~~~~Gs 435 (538)
||++||+.+++||
T Consensus 318 PAki~gL~p~KGt 330 (330)
T d1nfga2 318 PAKVFGMFPQKGT 330 (330)
T ss_dssp HHHHTTCTTTSSS
T ss_pred HHHHhCCCCCCCC
Confidence 9999999889996
|
| >d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=100.00 E-value=5.6e-35 Score=289.88 Aligned_cols=329 Identities=32% Similarity=0.521 Sum_probs=270.4
Q ss_pred cccccccccccccC-CCCChhhHHHHHHHHHhCCcEEEecccCCCCC-----CHHHHHHHHH-HH-hcccceeeeeeeee
Q 009282 106 GGIDPHTHLAMEFM-GSETIDDFFSGQAAALAGGTTMHIDFVIPING-----SLTAGFEAYE-KK-AKNSCMDYGFHMAI 177 (538)
Q Consensus 106 GlID~H~H~~~~~~-~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-----~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 177 (538)
|+||+|+|+..+.. .....+++.++.++++.+||||+++|...... ...+.+.... +. ..+..++++++...
T Consensus 1 G~ID~HvH~rePg~~~~~~~ed~~tgs~AAa~GGvTtvi~mp~~~p~~~~~~~~~~~~~~~~~~~a~~~~~vdy~~~~~~ 80 (384)
T d2fvka2 1 GGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALAESVKLDVDEYSEQTLYCDYGLHLIL 80 (384)
T ss_dssp CEEECCBCCCCTTCTTSCCSCCHHHHHHHHHHTTEEEEEEEEECCTTCCSTTHHHHHHHHHHHHHTTSCCSSEEEEEEEC
T ss_pred CceeCCcCCCCCCCCCCcccchHHHHHHHHHcCCceEEEECCCCCCCCCCHHHHHHHHHHHHHHHHhcCccceeeEEEEE
Confidence 89999999988721 12567889999999999999999999643322 2233333222 22 24588999998766
Q ss_pred ecCChhh-----HHHHHHH--HHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHH
Q 009282 178 TKWDEVV-----SDEMEVM--VKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIE 250 (538)
Q Consensus 178 ~~~~~~~-----~~~~~~~--~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~ 250 (538)
....... +.++..+ ....|+..+|+|+.+.+. ..+.+.+.+.++.+++.|..+.+|+++........+.+.+
T Consensus 81 ~~~~~~~~~~~el~~~~~~~~~~~~Gv~~~k~f~~~~~~-~~~~~~l~~~l~~~~~~g~~v~~H~Ed~~~~~~~~~~~~~ 159 (384)
T d2fvka2 81 FQIEKPSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGL-QISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEALEE 159 (384)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHCCCEEEEESSSTTT-BCCHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred eCCCCccchHHHHHhHHHHHHcccCcccccceecccccc-ccCHHHHHHHHHHHHhcCCceeeccccHHHHHHHHHHHhh
Confidence 5543221 1122111 235799999999877553 4578889999999999999999999999888888888889
Q ss_pred cCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCC
Q 009282 251 LGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSD 330 (538)
Q Consensus 251 ~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~ 330 (538)
.|...+..|...+|..+|..++.+++.++.+.+.++|+.|+++...++.++.++++|+.|++++++||+.++++.+....
T Consensus 160 ~g~~~~~~~~~~rP~~aE~~av~r~~~la~~~g~~lhi~HiSt~~~ve~I~~ak~~G~~Vt~Et~ph~L~l~~~~~~~~~ 239 (384)
T d2fvka2 160 QGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHH 239 (384)
T ss_dssp TTCCSTTHHHHTSCHHHHHHHHHHHHHHHHHTTCCEEECSCCCHHHHHHHHHHHHHTCCEEEEECHHHHHCCGGGGSCC-
T ss_pred cCCCChhhcccccccchhhHHHHHHHHHHHhcCceEEecccccchhhHHHHHhhhcCCCEEEEeChHHhhccchhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987653211
Q ss_pred --------------------------cccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcC-----
Q 009282 331 --------------------------FVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFG----- 379 (538)
Q Consensus 331 --------------------------~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~----- 379 (538)
...+..++++||+|...+++++|+.++.|...+++|||.|++..+|...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~k~~PPLR~~~dr~aL~~~l~dG~Id~IaSDHaP~~~~eK~~~~~~~~ 319 (384)
T d2fvka2 240 HGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPEGTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHR 319 (384)
T ss_dssp -------CCSCCGGGSSSSTTTCTTCTTGGGGGCCSSCCCCTTSHHHHHHHHHHTSCSEECCCBCCCBSSCCSSTTBGGG
T ss_pred cccccccccccccccccccccccccccccCceeEEcCCCCCHHHHHHHHHHhhCCceeEEecCCCCCCHHHhcccccccc
Confidence 1245789999999999999999999999999999999999988877542
Q ss_pred --------ccCcccCCCCCcchhhhHHHHHHHhhhcCCC-CHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 380 --------IDDFRKIPNGVNGIEERMHLVWDTMVESGQI-SVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 380 --------~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~l-s~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
.+.|+.+|+|++|++..+++++..++..+++ |++++++..+.|||++||+.+++|+
T Consensus 320 ~~~~~~~~~~df~~ap~G~~gle~~lpll~~~~v~~~~~~sl~~lv~~~s~nPAki~Gl~p~KGs 384 (384)
T d2fvka2 320 AFDPENNKNGEFRYIPNGLPGVCTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGS 384 (384)
T ss_dssp GEEGGGTEESCGGGSCCCBCCTTTHHHHHHHHTTTTTSSSCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred cccccccccCccccCCCCCccHHHHHHHHHHHHHhcCCCCCHHHHHHHHhHHHHHHhCCCCCCCC
Confidence 1368999999999999999999877877776 8999999999999999999888886
|
| >d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=100.00 E-value=8.5e-35 Score=284.66 Aligned_cols=319 Identities=26% Similarity=0.330 Sum_probs=271.7
Q ss_pred cccccccccccccCCCCChh-hHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHH-hcccceeeeeeeeeecCCh
Q 009282 106 GGIDPHTHLAMEFMGSETID-DFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK-AKNSCMDYGFHMAITKWDE 182 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~-~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 182 (538)
|+||+|+|+..+ +....+ ++.++.++|+.+||||+++|....+. ...+.+....+. .....++++++........
T Consensus 1 G~ID~HvH~rep--g~~~ke~~~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~~~~~ 78 (325)
T d1gkra2 1 GVVDEHVHIIDM--DLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGNL 78 (325)
T ss_dssp CEEEEEEECCCG--GGTTTSCCHHHHHHHHHHHTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEEEEECCTTCH
T ss_pred CcEeCCcCCCCC--CCCCcccHHHHHHHHHHccCCceEEECCCCCCCcCCHHHHHHHHHHhccCCccccccccccccccH
Confidence 899999999876 555555 58999999999999999999754443 344555444444 3557888988876655443
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCC---CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKG---SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (538)
..+..+. ..|+..++.+..+.. ....+...+.++++.+++.|..+.+|+++........+.....|......|
T Consensus 79 ---~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~H~E~~~l~~~~~~~~~~~g~~~~~~~ 154 (325)
T d1gkra2 79 ---PEIRKMH-DAGAVGFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKDMAAY 154 (325)
T ss_dssp ---HHHHHHH-HTTCCEEEEESSCSBTTTBCBCCHHHHHHHHHHHHHHTCEEEEECCCHHHHHHHHHHHHHTTCCSHHHH
T ss_pred ---HHHHhhh-hcccceeccccccccCCccccccHHHHHHHHHHHHhcCCceEeccCcHHHHHHHHHHhhhcCCcccccc
Confidence 3444444 678888888765432 234567889999999999999999999998877777777788898888889
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
...+|...|...+.+++.++...+.++|+.|+++...++.++.+++.|..|++++++|++.++++.+.. .+..+++
T Consensus 155 ~~~rp~~aE~~~v~r~~~la~~~~~~~hi~hiSs~~~l~~i~~ak~~g~~vt~et~ph~L~lt~~~~~~----~~~~~k~ 230 (325)
T d1gkra2 155 EASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESGPQYLNITTDDAER----IGPYMKV 230 (325)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHCCEEEECCCCSHHHHHHHHHHHHTTCCEEEEECHHHHSCCGGGHHH----HGGGGCC
T ss_pred cccCchHHHHHHHHHHHHHhhhcCcceeccccccHHHHHhhhhhhhcCCceEEeecccccccchhhhhc----cCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999887753 3468899
Q ss_pred cCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHH
Q 009282 340 SPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~a 419 (538)
+||+|..++++++|++++.|...+++|||.|++...|..+-+.|+.+|+|++|++..++..+..++..|++|++++++..
T Consensus 231 ~PPlR~~~Dr~aL~~al~~G~id~i~SDHaPh~~~~K~~~~~~~~~a~~G~~g~e~~lp~~~~~~v~~g~lsl~~~v~~~ 310 (325)
T d1gkra2 231 APPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGALGLETSLPMMLTNGVNKGRLSLERLVEVM 310 (325)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCCCEECCCEECCCGGGTGGGGTCGGGSCCCBCCTTTHHHHHHHHTGGGTSSCHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHhcCcceEEecCCCCCCHHHhccCCCccccCCCCcccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999988766689999999999999999999889999999999999999
Q ss_pred hHhHHHHcCCCCCCc
Q 009282 420 STECARIFNVYPRKG 434 (538)
Q Consensus 420 T~~~A~~lg~~~~~G 434 (538)
|.|||++||+.+++|
T Consensus 311 s~nPAki~gl~p~KG 325 (325)
T d1gkra2 311 CEKPAKLFGIYPQKG 325 (325)
T ss_dssp THHHHHHHTCTTTSS
T ss_pred hHHHHHHhCCCCCCC
Confidence 999999999987777
|
| >d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase), catalytic domain domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.97 E-value=1.1e-30 Score=253.97 Aligned_cols=304 Identities=22% Similarity=0.236 Sum_probs=207.0
Q ss_pred cccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHh-cccceeeeeeeeeecC-Ch
Q 009282 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKA-KNSCMDYGFHMAITKW-DE 182 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~ 182 (538)
|+||+|+|+..+ |....+++.++.++++.+||||+++|....+. .....++...+.. ....+++.++...... ..
T Consensus 1 G~ID~HvHlr~P--G~~~~ed~~tgs~AAa~GGvTtv~~mPnt~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (310)
T d1xrta2 1 GFIDIHVHLRDP--GQTYKEDIESGSRCAVAGGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLCRVLPTGTITKGRKG 78 (310)
T ss_dssp CEEEEEECCCTT--TCTTTCCHHHHHHHHHHTTEEEEEECSCSSSCSCSHHHHHHHHHHHHHHCSSEEEECBCSBGGGCS
T ss_pred CcEeCcccCCCC--CccccccHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHHHHHhhccCCcccccceeeccCCcc
Confidence 899999999887 77788999999999999999999999654433 3344555444433 2356666666544432 12
Q ss_pred hhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCccccccc
Q 009282 183 VVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALS 262 (538)
Q Consensus 183 ~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 262 (538)
+.+.++..+. ..|...+ .+.+....+...+.++++.+.+.+..+..|+++....... ...+......|...
T Consensus 79 ~~~~~~~~~~-~~g~~~f----~~~~~~~~d~~~l~~~~~~~~~~~~~~~~h~e~~~~~~~~----~~~~~~~~~~~~~~ 149 (310)
T d1xrta2 79 KEIADFYSLK-EAGCVAF----TDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGV----INEGEVSALLGLSS 149 (310)
T ss_dssp SSBCCHHHHH-HHTCCCB----CCTTSCCCCHHHHHHHHHHHHHHTCEEEECCCGGGGTC--------------------
T ss_pred chhhhhhhcc-cCcEEEE----ECCCCCccCHHHHHHHHHHhhhhhhhhhhccchhhhhhhh----hhhhhcccccCccc
Confidence 2233344443 4565433 2334455689999999999999999999999876543322 23344445566778
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCC
Q 009282 263 RPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPP 342 (538)
Q Consensus 263 ~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 342 (538)
+|...|..++.+++.++...+.++++.|+++....+.++.+++.|..|++++++|++.++.+.+.. .+..++++||
T Consensus 150 rp~~~E~~ai~r~~~la~~~~~~~~i~HiSt~~~l~~i~~a~~~g~~vt~e~~ph~L~l~~~~~~~----~~~~~k~~Pp 225 (310)
T d1xrta2 150 RAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPNHLLFTEREVLN----SGANARVNPP 225 (310)
T ss_dssp ----CHHHHHHHHHHHHHHHCCEEEESCCCSHHHHHHHHHHHHTTCCEEEEECGGGGC----------------------
T ss_pred cchHHHHHHHHHHHHHHhhcCCeeeccccchHHHHHHHHHHHHcCCceecchHHHHhhcccccccc----ccchhhhccc
Confidence 899999999999999999999999999999999999999999999999999999999998876643 3467899999
Q ss_pred CCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHh
Q 009282 343 IRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTE 422 (538)
Q Consensus 343 ~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~ 422 (538)
+|...+++++|++++.|....++|||+|++...|. .++..++|++|++..++.++ .++.+++++++++++..|.|
T Consensus 226 lR~~~d~~aL~~al~~G~id~i~SDHaPh~~~~K~----~~~~~~~G~~g~e~~lp~l~-~~v~~g~l~l~~~v~~~s~n 300 (310)
T d1xrta2 226 LRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKE----LVEFAMPGIIGLQTALPSAL-ELYRKGIISLKKLIEMFTIN 300 (310)
T ss_dssp ----CCHHHHHHHHHHTCSCEECCCBCCCCC---------------CCCCGGGHHHHHH-HHHHTTSSCHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHhcCCCeEEecCCCCCCHHHcc----CcccCCCCceeHHHHHHHHH-HHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999887763 46678899999999999999 68888999999999999999
Q ss_pred HHHHcCC
Q 009282 423 CARIFNV 429 (538)
Q Consensus 423 ~A~~lg~ 429 (538)
||+++|+
T Consensus 301 pAki~gL 307 (310)
T d1xrta2 301 PARIIGV 307 (310)
T ss_dssp HHHHHTC
T ss_pred HHHHhCC
Confidence 9999999
|
| >d2eg6a1 c.1.9.4 (A:4-346) Dihydroorotase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Dihydroorotase domain: Dihydroorotase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=3.2e-22 Score=196.77 Aligned_cols=327 Identities=14% Similarity=0.092 Sum_probs=228.1
Q ss_pred eccccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHH---hcccceeeeeeeeeec
Q 009282 104 MPGGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKK---AKNSCMDYGFHMAITK 179 (538)
Q Consensus 104 ~PGlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 179 (538)
+|-=.|+|+|+-. +.......++++.|+|++++|....+. ...+.++.+.+. .......+.+......
T Consensus 6 ~~~~~D~HvH~Re--------g~~~~~t~aa~agG~t~v~~MPNT~Ppi~t~e~~~~~~~ri~~~~~~~~~~~~~~~~~~ 77 (343)
T d2eg6a1 6 IRRPDDWHLHLRD--------GDMLKTVVPYTSEIYGRAIVMPNLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYL 77 (343)
T ss_dssp EECCCEEEECCCS--------HHHHHHHHHHHHTTCSEEEECCCCSSCCCSHHHHHHHHHHHHHHSCTTCCCEEEEEEEC
T ss_pred ECCCCcceEecCC--------CchHhHHHHHHhccCCEEEECCCCCCCCCCHHHHHHHHHHHHHhccccCceeeeeeeec
Confidence 4556899999854 244455677889999999999744433 334444332222 1122223333333333
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEEeee----CCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCC
Q 009282 180 WDEVVSDEMEVMVKEKGINSFKFFMAY----KGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITG 255 (538)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~----~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~ 255 (538)
........+...........++.+... .+....+...+...++.++..+..+..|++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~--------------- 142 (343)
T d2eg6a1 78 TDSLDPNELERGFNEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKIGMPLLVHGEVTHA--------------- 142 (343)
T ss_dssp CTTCCHHHHHHHHHTTSEEEEEECCCCTTSCTTTCCSCGGGGHHHHHHHHHHTCCEEECCCCCCT---------------
T ss_pred cCCCChhhhhhhhhccccccccccccchhccccccccchHHHHHHHHHHHHhCchhhhcCccccc---------------
Confidence 332223334443322233444444322 1223446777888889999999999999864321
Q ss_pred cccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCccccc
Q 009282 256 PEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAA 335 (538)
Q Consensus 256 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (538)
+...++...+...+.+.+.++...+.++|+.|.++... ++.+++.+..|+++.++||++++.+++...++. .
T Consensus 143 ---~~~~~~~eae~~~~~~~~~l~~~~~~~~Hi~HiSt~~~---v~~ir~~~~~vt~EvtPHhL~L~~~d~~~~~~~--~ 214 (343)
T d2eg6a1 143 ---DIDIFDREARFIESVMEPLRQRLTALKVVFEHITTKDA---ADYVRDGNERLAATITPQHLMFNRNHMLVGGVR--P 214 (343)
T ss_dssp ---TSCGGGHHHHHHHHTHHHHHHHCTTCCEEECSCCSHHH---HHHHHTSCTTEEEEECHHHHHCCHHHHHTTSBC--G
T ss_pred ---cccccchhhhhHHHHHHHHHhhccCceEEEEecchhHH---HHHHHhcCCCcceeecCcHHHhhhhhhhcCCCc--c
Confidence 11224455667778888889999999999999999765 556677788899999999999999988754443 4
Q ss_pred ceeecCCCCCcccHHHHHHHHhcC-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHH
Q 009282 336 KYVMSPPIRASGHNKALQAALATG-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTD 414 (538)
Q Consensus 336 ~~~~~p~~r~~~~~~~l~~~l~~G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~e 414 (538)
.++++||+|...+++.++..+..| +.+.++|||+|+....+. +...+.|+.|.+..+++.+..+. .. +++++
T Consensus 215 ~~k~nPPlR~~~d~~~l~~~~~~g~i~d~iatDHaPh~~e~K~-----~~~~~~g~~g~e~~l~l~l~~~~-~~-~~L~~ 287 (343)
T d2eg6a1 215 HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKE-----SSCGCAGCFNAPTALGSYATVFE-EM-NALQH 287 (343)
T ss_dssp GGCCSSCCCCHHHHHHHHHHHHTTCTTEEECCCBCCCCHHHHS-----STTBCCCCCCTTTHHHHHHHHHH-HT-TCGGG
T ss_pred ceeeeccccccchhhHHHHHHHcCCCeeeeecCCCCccccccc-----ccccccccCChHHHHHHHHHHHH-hc-CCHHH
Confidence 678999999999999888766665 558999999999887764 44578899999999998885443 33 68999
Q ss_pred HHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccC-CeEEeeEE
Q 009282 415 YVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYE-GRRVKGKV 478 (538)
Q Consensus 415 al~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v 478 (538)
+++..|.|||+++|+....|.| ++. +..|.++.+.+.++..|+||. |..+..+|
T Consensus 288 lv~~~S~nPaki~gL~~~kg~I--------~~~--~~~~~v~~~~~~sk~~~tPf~~g~~l~w~v 342 (343)
T d2eg6a1 288 FEAFCSVNGPQFYGLPVNDTFI--------ELV--REEQQVAESIALTDDTLVPFLAGETVRWSV 342 (343)
T ss_dssp HHHHHHTHHHHHHTCCCCCSEE--------EEE--CCCEECCSCEECSSSEECCTTTTCEESCEE
T ss_pred HHHHHhHhHHHHhCCCCCCCeE--------EEe--cCceecCccccCCCCCeEecCCCCccceee
Confidence 9999999999999997777754 334 567999988889999999999 65444444
|
| >d2uz9a2 c.1.9.9 (A:76-388) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.2e-20 Score=183.18 Aligned_cols=247 Identities=14% Similarity=0.081 Sum_probs=154.1
Q ss_pred HHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeee---eec---CChhhHHHHHHHHH---HcCCcEEE
Q 009282 131 QAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA---ITK---WDEVVSDEMEVMVK---EKGINSFK 201 (538)
Q Consensus 131 ~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~---~~g~~~ik 201 (538)
...++++|+|++.++............+...+.+.+.......... .+. ..++.+.+..++.+ ..+...++
T Consensus 53 ~~~~l~~G~tt~~~~~~~~~~~~~~~~~a~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 132 (313)
T d2uz9a2 53 VRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVK 132 (313)
T ss_dssp HHHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECSCCSSSTTSCCCHHHHHHHHHHHHHHHHHHTCSSEE
T ss_pred HHHHHHhCCeEeeecccccccchhHHHHHHHHhCCcccccceeccCCcccchhhhhHHHHHHHHHHHHHHhhccccccee
Confidence 4456889999999875432222223333344444443333222211 111 11233444444332 35778888
Q ss_pred EEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHH
Q 009282 202 FFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEF 281 (538)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 281 (538)
....++..+..+++.++++.+.|+++|+++.+|+.....-......+...+.. .+ ..+.....
T Consensus 133 ~~~~~~~~~~~~~e~l~~~~~~a~~~g~~~~~H~~e~~~e~~~~~~~~~~~~~----------------~~-~~~~~~g~ 195 (313)
T d2uz9a2 133 PIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKN----------------YT-SVYDKNNL 195 (313)
T ss_dssp EEEEECCGGGCCHHHHHHHHHHHHHHTCEEEEEESCSHHHHHHHHHHSTTSSS----------------HH-HHHHHTTC
T ss_pred EEEeccccccccHHHHHHHHHHhhccccceeeehhcchhHHHHHHHhhcccCC----------------hH-HHHHHcCC
Confidence 88888888889999999999999999999999995543212222222111111 01 11122234
Q ss_pred cCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCc
Q 009282 282 VNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGIL 361 (538)
Q Consensus 282 ~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~ 361 (538)
++.++.+.|+...++ ++++.+++.|+.++.||.+. +..+.+ .|| +.+++++|++
T Consensus 196 l~~~~~~~H~~~l~~-~e~~~l~~~g~~~~~~P~~~-------------~~~~~~---~~~---------v~~l~~~Gv~ 249 (313)
T d2uz9a2 196 LTNKTVMAHGCYLSA-EELNVFHERGASIAHCPNSN-------------LSLSSG---FLN---------VLEVLKHEVK 249 (313)
T ss_dssp CSTTEEEEECTTCCH-HHHHHHHHHTCEEEECHHHH-------------HHTTCC---CCC---------HHHHHHTTCE
T ss_pred cCCcceEEeeeecch-hHHHHHhhhcccccccchhh-------------hhcccc---ccc---------hhhhhccCce
Confidence 577899999998877 88999999999999998862 211111 122 8899999999
Q ss_pred eEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh-----hcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 362 QLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV-----ESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 362 ~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~-----~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
+++|||..+. ....+ +. ++.....+.+.. ...++|++|+|+++|+|+|++||+++++||
T Consensus 250 valGTD~~~~-~~~~~-----~~---------~~~~a~~~~~~~~~~~~~~~~~~~~e~l~~AT~ngA~aLg~~~~iGS 313 (313)
T d2uz9a2 250 IGLGTDVAGG-YSYSM-----LD---------AIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGN 313 (313)
T ss_dssp EEECCCTTTS-CCCCH-----HH---------HHHHHHHHHHHHHHTTSSSSCCCHHHHHHHHTHHHHHHTTCTTTSSS
T ss_pred EEEeCCCCCC-CCCCH-----HH---------HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHhCCCCCcCc
Confidence 9999996432 22111 11 223333222222 234599999999999999999999999997
|
| >d1p1ma2 c.1.9.9 (A:50-330) Hypothetical protein TM0936, probable catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936, probable catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2.1e-20 Score=178.26 Aligned_cols=251 Identities=15% Similarity=0.157 Sum_probs=163.4
Q ss_pred cccccccccccccC---------------------CCCChhhHHH----HHHHHHhCCcEEEecccCCCCCCHHHHHHHH
Q 009282 106 GGIDPHTHLAMEFM---------------------GSETIDDFFS----GQAAALAGGTTMHIDFVIPINGSLTAGFEAY 160 (538)
Q Consensus 106 GlID~H~H~~~~~~---------------------~~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~ 160 (538)
||||+|+|+++... ...++++++. ....++++||||+.|+... .....+..
T Consensus 1 GLVnaH~Hl~~~~~rg~~~~~~l~~wl~~~~~~~~~~~t~e~~~~~~~~~~~e~l~~G~Ttv~d~~~~----~~~~~~a~ 76 (281)
T d1p1ma2 1 ALFNTHTHAPMTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKMAYYGTILAQMEMARHGIAGFVDMYFH----EEWIAKAV 76 (281)
T ss_dssp CEEEEEECGGGGGGTTSSCSCCHHHHHHTTHHHHHTTCCHHHHHHHHHHHHHHHHTTTEEEEEEEESS----HHHHHHHH
T ss_pred CcEehhhCHhHHHHHhccCCCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhhCCeEEEeeeccC----cHHHHHHH
Confidence 89999999987621 1224444433 2344689999999998543 34455555
Q ss_pred HHHhcccceeeeeeeeeecCChhhHHHHHHHHH-HcCC-cEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 161 EKKAKNSCMDYGFHMAITKWDEVVSDEMEVMVK-EKGI-NSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~-~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
.+.+.+..+.......... ..+..++..++.. ..+. ..+...+.+++...++++.++.+.+.|+++|+++++|+.+.
T Consensus 77 ~~~g~r~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~i~iH~~e~ 155 (281)
T d1p1ma2 77 RDFGMRALLTRGLVDSNGD-DGGRLEENLKLYNEWNGFEGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTIHLYET 155 (281)
T ss_dssp HHHCCEEEEEEEECCBTTB-CTTHHHHHHHHHHHHTTGGGTEEEEEEECCTTTSCHHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred HHhCCceEEeeeeeecCcc-ccccHHHHHHHHHHhcCccCceEEEEecccchhhhhhhhHHHHHHHhccCccccccccCC
Confidence 5555554443332221111 2223333333332 2232 34566667788888999999999999999999999998442
Q ss_pred -hhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccc
Q 009282 239 -DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVS 317 (538)
Q Consensus 239 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~ 317 (538)
.+. .....+.+ ...++.++.+.|+...++ ++++.+++.|+.++.||.+.
T Consensus 156 ~~e~-~~~~~l~~----------------------------~g~l~~~~~~~H~~~~~~-~di~~la~~~~~vv~cP~sn 205 (281)
T d1p1ma2 156 SKEE-YDLEDILN----------------------------IGLKEVKTIAAHCVHLPE-RYFGVLKDIPFFVSHNPASN 205 (281)
T ss_dssp TTCC-CCTHHHHT----------------------------TTTTTSCEEEEECTTCCG-GGTTTTTTSSEEEEECHHHH
T ss_pred cccc-hhHHHHHH----------------------------cCCCCccccccceeeecH-HHHHHHHhcCCccccccchh
Confidence 211 00111111 234567889999998887 88999999999999998862
Q ss_pred ccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhH
Q 009282 318 GLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERM 397 (538)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 397 (538)
+..+... || +.+++++|++++||||+.+.+....++ . ++.+
T Consensus 206 -------------~~lg~~~---~~---------~~~~~~~Gv~v~LGTD~~~s~~~~d~~-----~---------em~~ 246 (281)
T d1p1ma2 206 -------------LKLGNGI---AP---------VQRMIEHGMKVTLGTDGAASNNSLNLF-----F---------EMRL 246 (281)
T ss_dssp -------------HHTTCCC---CC---------HHHHHHTTCEEEECCCCTTTTSCCCHH-----H---------HHHH
T ss_pred -------------hhhcccc---hh---------HHHHHhCCCeEEEECCCCCCCCCcCHH-----H---------HHHH
Confidence 2222111 22 789999999999999987665443222 1 4444
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCC
Q 009282 398 HLVWDTMVESGQISVTDYVRLTSTECARIFNVY 430 (538)
Q Consensus 398 ~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~ 430 (538)
...+.+......++++++|+++|+|+|++||++
T Consensus 247 a~~~~~~~~~~~~~~~~~l~~aT~~gA~aLGl~ 279 (281)
T d1p1ma2 247 ASLLQKAQNPRNLDVNTCLKMVTYDGAQAMGFK 279 (281)
T ss_dssp HHHHHHTTCTTSSCHHHHHHHHTHHHHHHHTCS
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 444444444556999999999999999999994
|
| >d2i9ua2 c.1.9.9 (A:67-376) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=1.4e-19 Score=175.26 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=149.0
Q ss_pred HHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeee-e----eecCChhhHHHHHHHHHHc--CCcEEEEEe
Q 009282 132 AAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHM-A----ITKWDEVVSDEMEVMVKEK--GINSFKFFM 204 (538)
Q Consensus 132 ~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~--g~~~ik~~~ 204 (538)
..++++||||+.|+...........+++..+.+.+......... . ......+.+.+..+...+. ..+.+...+
T Consensus 54 ~e~l~~GtTtv~d~~~~~~~~~~~~~~a~~~~gir~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~ 133 (310)
T d2i9ua2 54 KDLIKNGTTRVALFATLHKDSTIELFNMLIKSGIGAYVGKVNMDYNCPDYLTENYITSLNDTEEIILKYKDKSNIVKPII 133 (310)
T ss_dssp HHHHHTTEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEECEECCSSCCTTSCCCHHHHHHHHHHHHHHHTTTCSSEEECB
T ss_pred HHHHHcCCcceeeeeccchhhhHHHHHHHHHhCccccccceeccCCccccchhhHHHHHHHHHHHHHHhhccccccceee
Confidence 45688999999987543222234445555555544333222211 0 1111123344444444332 345677777
Q ss_pred eeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC-hhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcC
Q 009282 205 AYKGSFMINDELLIEGFKRCKSLGALAMVHAEN-GDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVN 283 (538)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 283 (538)
.++.....+++.++++.+.|+++|+++++|..+ ..+..... ..++.... . .. .+.....++
T Consensus 134 ~~~~~~~~~~e~~~~~~~~a~~~~~~~~~H~~E~~~e~~~~~---~~~~~~~~---------~-----~~-~~~~~g~~~ 195 (310)
T d2i9ua2 134 TPRFVPSCSNELMDGLGKLSYKYRLPVQSHLSENLDEIAVVK---SLHKKSNF---------Y-----GE-VYDKFGLFG 195 (310)
T ss_dssp EECCGGGCCHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHH---HHCTTCSS---------H-----HH-HHHHTTCSS
T ss_pred cccCCCccCHHHHHHHHHHhhccccceeehhccchHHHHHHH---HHhccccc---------H-----HH-HHHhcCCcc
Confidence 888888899999999999999999999999954 44333222 22232210 0 11 111112233
Q ss_pred -CCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCce
Q 009282 284 -TPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQ 362 (538)
Q Consensus 284 -~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~ 362 (538)
.++.+.|+...++ ++++.+++.|+.|+.||.+ ++..+.+. +| ++.++++|+++
T Consensus 196 ~~~~~~~H~~~~~~-~~i~~la~~g~~vv~cP~s-------------n~~l~~g~---~p---------v~~l~~~Gv~v 249 (310)
T d2i9ua2 196 NTPTLMAHCIHSSK-EEINLIKRNNVTIVHCPTS-------------NFNLGSGM---MP---------VRKYLNLGINV 249 (310)
T ss_dssp SSCEEEEECCSCCH-HHHHHHHHTTCEEEECHHH-------------HHHTTCCC---CC---------HHHHHHTTCEE
T ss_pred CCceeeeeeeeech-hHHHHHHhcCCEEEEeecc-------------cccccCCc---cc---------ccchhccCceE
Confidence 3577899988887 8999999999999999876 33332222 23 89999999999
Q ss_pred EEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhh------hcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 363 LVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMV------ESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 363 ~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~------~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
++|||..+.+.. . .|. ++.+....+++. ....++++|+|+|+|+|+|+++| ++||
T Consensus 250 ~lGTD~~~~~~~-d-----m~~---------~m~~a~~~~~~~~~~~~~~~~~l~~~e~l~~aT~~gA~alG---riGS 310 (310)
T d2i9ua2 250 VLGSDISAGHTC-S-----LFK---------VIAYAIQNSKIKWQESGKKDMFLSTSEAFYMATKKGGSFFG---KVGS 310 (310)
T ss_dssp EECCCBTTBCCS-C-----HHH---------HHHHHHHHHHHHHHHTTSCSCCCCHHHHHHHHTHHHHTTTS---SCSS
T ss_pred EEecCCCCCCCC-C-----HHH---------HHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHhc---CCCC
Confidence 999997654321 1 111 333333332221 23458999999999999999998 3675
|
| >d1ra0a2 c.1.9.5 (A:56-375) Cytosine deaminase catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Cytosine deaminase catalytic domain domain: Cytosine deaminase catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.3e-18 Score=166.20 Aligned_cols=281 Identities=15% Similarity=0.086 Sum_probs=152.5
Q ss_pred ccccccccccccC-----------------------CCCChhhHH----HHHHHHHhCCcEEEecccCCCCCCHH--HHH
Q 009282 107 GIDPHTHLAMEFM-----------------------GSETIDDFF----SGQAAALAGGTTMHIDFVIPINGSLT--AGF 157 (538)
Q Consensus 107 lID~H~H~~~~~~-----------------------~~~~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~--~~~ 157 (538)
|||+|+|+...+. ...+++++. ..+..++++||||++++......... ...
T Consensus 2 FID~H~Hl~~~~~~~~~~~~~~g~l~e~i~~~~~~~~~~t~ed~~~~~~~~~~~~l~~GvTtv~~~~~~~~~~~~~~~~~ 81 (320)
T d1ra0a2 2 FVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM 81 (320)
T ss_dssp EEEEEECTTTTTCTTSSSCCSSCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTEEEEEEEEECCSTTCHHHHHH
T ss_pred CeecCcCcchhcccCCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEEeccccccchHHHHHHH
Confidence 9999999864421 112444443 23466789999999998654333111 112
Q ss_pred HHHHHHhcc-cceeeeeee-eeecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEc
Q 009282 158 EAYEKKAKN-SCMDYGFHM-AITKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHA 235 (538)
Q Consensus 158 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~ 235 (538)
......... ..+...... .......+......... ..+...++.............+.++.+++.|++.|+++..|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~~~~h~ 160 (320)
T d1ra0a2 82 LEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEAL-RLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHC 160 (320)
T ss_dssp HHHHHHHTTTCEEEEEEECTTCSSSSTTHHHHHHHHH-HTTCSEECCCGGGSSSHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHhhcccccccccccccccccCcHHHHHHHHHHH-HhcccccccCCCCCCCccccHHHHHHHHHHHHHcCCCeeeee
Confidence 222222111 112211111 11112223344444444 556666554333333334457889999999999999999998
Q ss_pred CChh-hHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccC------HHHHHHHHHHHHcCC
Q 009282 236 ENGD-AVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMS------MDAMEEIAKARKAGQ 308 (538)
Q Consensus 236 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~------~~~~~~i~~~~~~g~ 308 (538)
.... ....... ...... .......+....|+.. ....+.+..+++.|+
T Consensus 161 ~~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 215 (320)
T d1ra0a2 161 DEIDDEQSRFVE------------------------TVAALA-HHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGI 215 (320)
T ss_dssp CCSSCTTCCHHH------------------------HHHHHH-HHHTCGGGEEEEECGGGGGSCHHHHHHHHHHHHHHTC
T ss_pred cccchhHHHhhh------------------------hHHHHH-HHhhcccccccccceeccccchhhhHHHHHHhhhcCc
Confidence 4332 1111110 000000 1111222334444421 222366778899999
Q ss_pred cEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCC
Q 009282 309 RVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPN 388 (538)
Q Consensus 309 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~ 388 (538)
.++.++.....+........ ..... ...+.+.+.|++++++||....... +.
T Consensus 216 ~~~~~p~~~~~~~~~~~~~~------~~~~~----------~~~~~~~~~G~~v~~gtd~~~~~~~------------~~ 267 (320)
T d1ra0a2 216 NFVANPLVNIHLQGRFDTYP------KRRGI----------TRVKEMLESGINVCFGHDGVFDPWY------------PL 267 (320)
T ss_dssp EEEECHHHHHHHTTTTCCSS------CCCCC----------CCHHHHHHTTCCEEECCBCSSBTTB------------SC
T ss_pred EEEeccchhhhhcccccccc------ccccc----------CchhhHhhcCceEeecCCcCCCCCC------------CC
Confidence 99988875332222111100 00001 1278899999999999996543211 11
Q ss_pred CCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcccccCCCcc
Q 009282 389 GVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGAILVGSDAD 443 (538)
Q Consensus 389 g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~AD 443 (538)
+...+...+...+......+++|+.|||+++|+|||++||+++ |+|+|||+||
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~s~~eal~~aT~ngA~aLgl~~--Gsi~~Gk~AD 320 (320)
T d1ra0a2 268 GTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQD--YGIAAGNSAN 320 (320)
T ss_dssp CCCCHHHHHHHHHHHTTCCSHHHHHGGGGGGTHHHHHHTTCSS--CSSCTTSBCC
T ss_pred CChhHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhCCCC--CccCCCCCcC
Confidence 1111112222223222345568999999999999999999965 9999999998
|
| >d2paja2 c.1.9.9 (A:70-405) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.74 E-value=2.3e-17 Score=161.12 Aligned_cols=270 Identities=16% Similarity=0.152 Sum_probs=149.0
Q ss_pred ccccccccccccccC-C----------------------CCChhhHHH----HHHHHHhCCcEEEecccCCCCC-----C
Q 009282 105 PGGIDPHTHLAMEFM-G----------------------SETIDDFFS----GQAAALAGGTTMHIDFVIPING-----S 152 (538)
Q Consensus 105 PGlID~H~H~~~~~~-~----------------------~~~~~~~~~----~~~~~l~~GvTt~~d~~~~~~~-----~ 152 (538)
|||||+|+|++++.. | ..++++++. ....++++||||++|+...... .
T Consensus 1 PGlInaH~Hl~~s~~rg~~~~~~~~l~~wl~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~GvTtv~d~~~~~~~~~~~~~ 80 (336)
T d2paja2 1 PAWVNTHHHLFQSLLKGEPAGLDATLTPWLAATPYRFRALFDERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDS 80 (336)
T ss_dssp ECEECCCCCGGGGGCCSCC-----------------CGGGCCHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCTTCSSCH
T ss_pred CCCEehhhChhhhccccccccCCCCHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHhCCCeEEEecccccccccchhH
Confidence 999999999865421 0 123444433 3345688999999998654332 2
Q ss_pred HHHHHHHHHHHhcccceeeeeeeeeec-----------CC-hhhHHHHHHHHHHc-----CCcEEEEEeeeCCCccCCHH
Q 009282 153 LTAGFEAYEKKAKNSCMDYGFHMAITK-----------WD-EVVSDEMEVMVKEK-----GINSFKFFMAYKGSFMINDE 215 (538)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~~-----g~~~ik~~~~~~~~~~~~~~ 215 (538)
....++...+.+.+.....+....... .. .........+.... .................+.+
T Consensus 81 ~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (336)
T d2paja2 81 SAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPR 160 (336)
T ss_dssp HHHHHHHHHHTTCEEEEEECCCSCCCSCSTTSCGGGCCCCHHHHHHHHHHHHHHTCCCSTTCSEEEEECCTTTTTSSCHH
T ss_pred HHHHHHHHHHhCceeEeecceeccCcccccccchhhhhhhHHHHHHHHHHHHHHhhhhcccccceeeecccccCcccCHH
Confidence 233345555555443322221110000 00 11223333333221 22233333333344556899
Q ss_pred HHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHH
Q 009282 216 LLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD 295 (538)
Q Consensus 216 ~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~ 295 (538)
.++...+.+++.+.++..|+.......... ....+.. ....+......+..+...|+....
T Consensus 161 ~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~h~~~~~ 221 (336)
T d2paja2 161 EMRETAAVARRLGLRMHSHLSETVGYQDSA--YSMYGKS-----------------PVAFCGEHDWLGSDVWYAHLVKVD 221 (336)
T ss_dssp HHHHHHHHHHHTTCEEEEECC---------------CCC-----------------HHHHHHHTTCCSTTEEEESCCSCC
T ss_pred HHHHHHhhhhccCCceeeeccccchhhHHH--HHhcCCc-----------------cccccccccccccccccccceecc
Confidence 999999999999999999996543211111 1111211 111122233456778899998877
Q ss_pred HHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhh
Q 009282 296 AMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQ 375 (538)
Q Consensus 296 ~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~ 375 (538)
. ..++.+++.+..+..++... +..+... .+++.++++|+++++|||+.+.+...
T Consensus 222 ~-~~~~~l~~~~~~~~~~p~~~-------------~~~~~~~------------~~~~~l~~~Gv~valGTD~~~s~~~~ 275 (336)
T d2paja2 222 A-DEIALLAQTGTGVAHCPQSN-------------GRLGSGI------------CPVREMADAGVPVSIGVDGAASNEAA 275 (336)
T ss_dssp H-HHHHHHHHHTCEEEECHHHH-------------HCC-----------------CCTTHHHHTCCEEECCCHHHHCSCC
T ss_pred h-HHHHHHhhccccceeccchh-------------hccCccc------------cchhhHHhcCCeEEEEcCCCCCCCcc
Confidence 6 77888999999998887752 1111111 22577889999999999965443332
Q ss_pred hhcCccCcccCCCCCcchhhhHHHHHHH----------------hhhcCCCCHHHHHHHHhHhHHHHcCCCCCCc
Q 009282 376 KAFGIDDFRKIPNGVNGIEERMHLVWDT----------------MVESGQISVTDYVRLTSTECARIFNVYPRKG 434 (538)
Q Consensus 376 ~~~~~~~~~~~~~g~~g~~~~~~~~~~~----------------~~~~~~ls~~eal~~aT~~~A~~lg~~~~~G 434 (538)
.++ . ++++.....+ .....++|+.|+|+++|+|+|++||+ +++|
T Consensus 276 d~~-----~---------emr~a~~~~r~~~~~~~~~~~~~~~~~~~~~~~t~~eal~~aT~~gA~aLgl-d~iG 335 (336)
T d2paja2 276 DMI-----S---------EVHMTWLAQRARLGMLAQPAYRGGSFEGGAGAASIAEVIHWGTAGGARVMGL-DEVG 335 (336)
T ss_dssp SHH-----H---------HHHHHHHHHHHTC-------------------CCHHHHHHHHTHHHHHHHTC-TTSS
T ss_pred cHH-----H---------HHHHHHHHHHHhhccccccccccccccCCCCCCCHHHHHHHHHHHHHHHhCc-cccC
Confidence 211 1 2333322221 12345699999999999999999999 4565
|
| >d2imra2 c.1.9.16 (A:91-398) Hypothetical protein DR0824 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: DR0824-like domain: Hypothetical protein DR0824 species: Deinococcus radiodurans [TaxId: 1299]
Probab=99.67 E-value=7.9e-17 Score=155.01 Aligned_cols=271 Identities=14% Similarity=0.067 Sum_probs=149.8
Q ss_pred ccccccccccccccC-------------------CCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhc
Q 009282 105 PGGIDPHTHLAMEFM-------------------GSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAK 165 (538)
Q Consensus 105 PGlID~H~H~~~~~~-------------------~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~ 165 (538)
|||||+|+|+..+.. .....+....+...++++||||++|+.... ..........+.
T Consensus 1 PGlIdaH~Hl~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~G~Ttv~d~~~~~----~~~~~~~~~~~~ 76 (308)
T d2imra2 1 PPPVNAHTHLDMSAYEFQALPYFQWIPEVVIRGRHLRGVAAAQAGADTLTRLGAGGVGDIVWAP----EVMDALLAREDL 76 (308)
T ss_dssp SCCCEEEEESSCCHHHHHHCHHHHTSHHHHHHHTTCCHHHHHHHHHHHHHHTTCCCEEEEECSH----HHHHHHHTCTTC
T ss_pred CCccchhhChhhhCccccCCCHHHHHHHHHhccccccHHHHHHHHHHHHHHcCCeEEEehhcCH----HHHHHHHHHhCc
Confidence 999999999975411 001111223345667899999999986432 222222222222
Q ss_pred ccceeeeeeeeeecCChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh-H
Q 009282 166 NSCMDYGFHMAITKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA-V 241 (538)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~-~ 241 (538)
+...............++......+..+ ......++.....+..+..+.+..+.....+++.+.++..|...... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 156 (308)
T d2imra2 77 SGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERPGLRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTEL 156 (308)
T ss_dssp CEEEEEEECBCCGGGHHHHHHHHHHHHHHHHTTCBTTEEEEEEECCSSSBCHHHHHHHHHHHHHHTCCBEEEESCSHHHH
T ss_pred CeEEEeeecCCCCCCHHHHHHHHHHHHHHHhccCCCceEEeeecccccccchHHHHHHhhhccccCccceeeeecccchh
Confidence 2222221111111111223333333331 23445667666777777788999999999999999999999965432 2
Q ss_pred HHHHHHHHHcCCCCc------c---cccc-cCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEE
Q 009282 242 FEGQKRMIELGITGP------E---GHAL-SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311 (538)
Q Consensus 242 ~~~~~~~~~~g~~~~------~---~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~ 311 (538)
...... ...... . .+.. ..........++. +.....++.+..+.|+..... +.++.+++.|..+.
T Consensus 157 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~~g~l~~~~~~~h~~~~~~-~~~~~~~~~g~~~~ 231 (308)
T d2imra2 157 EMFRTG---GGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRY-LDELGVLAARPTLVHMVNVTP-DDIARVARAGCAVV 231 (308)
T ss_dssp HHHHHS---CSTTGGGSCGGGSCSSHHHHHTSCCCTTCCHHHH-HHHHTCGGGCCEEEECCSCCH-HHHHHHHHHTCCEE
T ss_pred hhhhhh---ccchhhhhhhhhhHHHhhhhhhcccccCCCHHHH-HHHCCCCCCCeeeeecccchh-hhhhhhhhcCCccc
Confidence 222211 100000 0 0000 0000000011111 222334456778888887776 78888999999988
Q ss_pred EeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCc
Q 009282 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVN 391 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~ 391 (538)
.++..... .+..+ ..++++.++|+++++|||+.+.+....
T Consensus 232 ~~p~~~~~-------------~~~~~------------~~~~~l~~aGv~valGTD~~~~~~~~~--------------- 271 (308)
T d2imra2 232 TCPRSNHH-------------LECGT------------FDWPAFAAAGVEVALGTDSVASGETLN--------------- 271 (308)
T ss_dssp ECHHHHHH-------------TTCCC------------CCHHHHHHTTCCEEECCCCHHHHSCSC---------------
T ss_pred cccccccc-------------ccccc------------chHHHHHHCCCcEEEECCCCCCCCchh---------------
Confidence 88764211 11111 127889999999999999643322111
Q ss_pred chhhhHHHHHHHhh-hcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 392 GIEERMHLVWDTMV-ESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 392 g~~~~~~~~~~~~~-~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
+...++.+. ...++|+.|+|+++|+|+|++||+
T Consensus 272 -----~~~e~~~a~~~~~g~tp~e~l~~aT~~gA~~LGl 305 (308)
T d2imra2 272 -----VREEVTFARQLYPGLDPRVLVRAAVKGGQRVVGG 305 (308)
T ss_dssp -----THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHC-
T ss_pred -----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCC
Confidence 111111111 244699999999999999999998
|
| >d2puza2 c.1.9.17 (A:80-380) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.66 E-value=1.6e-15 Score=144.30 Aligned_cols=149 Identities=18% Similarity=0.150 Sum_probs=98.0
Q ss_pred ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEE
Q 009282 210 FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVV 289 (538)
Q Consensus 210 ~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 289 (538)
.....+.++.+++.+.+.|+++..|+.......... . ..+.+. ..+.
T Consensus 153 ~~~~~~~~~~~~~~a~~~g~~~~~h~~~~~~~~~~~-~-------------------------------~~~~~~-~~~~ 199 (301)
T d2puza2 153 IAFSVKEIDRVFAAAQQRGLPVKLHAEQLSNLGGAE-L-------------------------------AASYNA-LSAD 199 (301)
T ss_dssp TSBCHHHHHHHHHHHHHTTCCBEEEESSSSCCSHHH-H-------------------------------HHHTTC-SEEE
T ss_pred cccCHHHHHHHHHHHHHCCCceeeecccccchhHHH-H-------------------------------Hhhhcc-ceee
Confidence 345788999999999999999999986543221111 1 111222 2355
Q ss_pred eccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCC
Q 009282 290 HVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHC 369 (538)
Q Consensus 290 h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~ 369 (538)
|+..... +....+++.+..+..++.+...... . ..++ ++.++++|+++++|||+.
T Consensus 200 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~~---------~~~~~~~Gv~v~lGTD~~ 254 (301)
T d2puza2 200 HLEYLDE-TGAKALAKAGTVAVLLPGAFYALRE------------K---QLPP---------VQALRDAGAEIALATDCN 254 (301)
T ss_dssp ECTTCCH-HHHHHHHHHTCEEEECHHHHHHHTC------------C---CCCC---------HHHHHHHTCCEEECCCCC
T ss_pred eeecchH-HHHHHHHhcCCeeeeccchhhhhcc------------c---ccch---------HHHHHHCCCeEEEEeCCC
Confidence 5554444 5666788888888877664211110 0 1122 788999999999999964
Q ss_pred CCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 370 AFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
+.... ...+...++.++...|+|+.|||+++|+|||++||+++++||
T Consensus 255 ~~~~~-------------------~~~l~~~~~~~~~~~gl~~~eal~~aT~~~A~~LGl~~~~GS 301 (301)
T d2puza2 255 PGTSP-------------------LTSLLLTMNMGATLFRMTVEECLTATTRNAAKALGLLAETGT 301 (301)
T ss_dssp SSSCC-------------------BCCHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred CCCCc-------------------cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCcCc
Confidence 32211 012333343455555799999999999999999999999997
|
| >d2bb0a2 c.1.9.17 (A:74-373) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=5.2e-15 Score=140.84 Aligned_cols=150 Identities=14% Similarity=0.104 Sum_probs=100.9
Q ss_pred CccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEE
Q 009282 209 SFMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYV 288 (538)
Q Consensus 209 ~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 288 (538)
....+.+.+..+.+.+++.++.+..|+.......... . ..+.+. ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~-~-------------------------------~~~~~~-~~~ 197 (300)
T d2bb0a2 151 TGVFTVSQSRRYLQKAAEAGFGLKIHADEIDPLGGAE-L-------------------------------AGKLKA-VSA 197 (300)
T ss_dssp TTSBCHHHHHHHHHHHHHTTCEEEEEECSSSCCSHHH-H-------------------------------HHHTTC-SEE
T ss_pred cccCCHHHHHHHHHHHHhhhhcccccccchhhhHHHH-H-------------------------------HHHhCC-ceE
Confidence 4456788999999999999999999995432211111 1 112222 246
Q ss_pred EeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCC
Q 009282 289 VHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDH 368 (538)
Q Consensus 289 ~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~ 368 (538)
.|+..... +.++.+++.+..+..++.+... .... .. .+++.++++|+++++|||+
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~-------------l~~~--~~---------~~~~~l~~~Gv~v~lgTD~ 252 (300)
T d2bb0a2 198 DHLVGTSD-EGIKKLAEAGTIAVLLPGTTFY-------------LGKS--TY---------ARARAMIDEGVCVSLATDF 252 (300)
T ss_dssp EECTTCCH-HHHHHHHHHTCEEEECHHHHHH-------------TTCC--CC---------CCHHHHHHTTCCEEECCCB
T ss_pred EEeeeccH-HHHHHHHhcCcceeecchhhhh-------------hhcc--cc---------ccHHHHHHCCCEEEEEeCC
Confidence 67776665 7788889999988888765211 1000 00 1278899999999999996
Q ss_pred CCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 369 CAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
.+.... ...+...++.++...|||+.|||+++|+|||++||+++++|+
T Consensus 253 ~~~~~~-------------------~~~l~~~~~~a~~~~gl~~~eal~~aT~~~A~~lG~~~~~G~ 300 (300)
T d2bb0a2 253 NPGSSP-------------------TENIQLIMSIAALHLKMTAEEIWHAVTVNAAYAIGKGEEAGQ 300 (300)
T ss_dssp BTTTBC-------------------CCCHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHTTCTTTSSC
T ss_pred CCCCCc-------------------hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcchhhCc
Confidence 432111 112333343455556799999999999999999999999985
|
| >d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Isoaspartyl dipeptidase domain: Isoaspartyl dipeptidase species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.4e-16 Score=125.05 Aligned_cols=87 Identities=23% Similarity=0.322 Sum_probs=69.4
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC--CCCceEEecCCCeeeccccccccccccccCCCCChhhHHH
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV--GDDVKVLDATGKFVMPGGIDPHTHLAMEFMGSETIDDFFS 129 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~--~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~~~~~~~~~ 129 (538)
+..++|+|++|++++.....+|+|+||||++|+++.+. +++.++||++|++|+|||||+|.|.........+.+.
T Consensus 7 ~~~llikna~i~~~~~~~~~dI~I~~g~I~~I~~~~~~~~~~~~~vID~~G~~v~PG~ID~H~h~~~~~~p~~~~~~--- 83 (105)
T d1onwa1 7 AGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPSDIVPNCTVVDLSGQILCPEILPGNDADLLVMTPELRIEQ--- 83 (105)
T ss_dssp GCCEEEESCEEESSSEEEECEEEEETTEEEEEETTCCTTSSSSCEEEECTTCEEEESCCTTSBCCEEEECTTCCEEE---
T ss_pred CCCEEEECcEEEcCCCCeeeeEEEECCEEEEeccCcccccCCCCeEEcCCCCEEeCCEeecccCcceecCCCcchHH---
Confidence 45699999999999877789999999999999986543 3568999999999999999999886554222333333
Q ss_pred HHHHHHhCCcEEEecc
Q 009282 130 GQAAALAGGTTMHIDF 145 (538)
Q Consensus 130 ~~~~~l~~GvTt~~d~ 145 (538)
.+.+|+|++.+.
T Consensus 84 ----~~~~G~~~v~~~ 95 (105)
T d1onwa1 84 ----VYARGKLMVKDG 95 (105)
T ss_dssp ----EEETTEEEEETT
T ss_pred ----HhhcceEEeccC
Confidence 368899998865
|
| >d2q09a2 c.1.9.17 (A:66-366) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=99.63 E-value=3.3e-15 Score=141.27 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=97.7
Q ss_pred cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEe
Q 009282 211 MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVH 290 (538)
Q Consensus 211 ~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h 290 (538)
.............++..+..+..|+....... ... +....+. ..+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~-~~~-------------------------------~~~~~~~-~~~~~ 200 (301)
T d2q09a2 154 GFSLAQTEQVYLAADQYGLAVKGHMDQLSNLG-GST-------------------------------LAANFGA-LSVDH 200 (301)
T ss_dssp SBCHHHHHHHHHHHHHTTCEEEEEESSSCCCS-HHH-------------------------------HHHHTTC-SEEEE
T ss_pred ccchhhHHHHHHHHHHhcccceecccccchhH-HHH-------------------------------HHHhcCC-ceEee
Confidence 34566667777888888999999985432110 111 1112222 24677
Q ss_pred ccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCC
Q 009282 291 VMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCA 370 (538)
Q Consensus 291 ~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~ 370 (538)
+..... +.++.+++.+..+..|+.+... .+.. ..|+ ++.++++|+++++|||..+
T Consensus 201 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~~-------------l~~~--~~~~---------~~~l~~aGv~v~lGTD~~~ 255 (301)
T d2q09a2 201 LEYLDP-EGIQALAHRGVVATLLPTAFYF-------------LKET--KLPP---------VVALRKAGVPMAVSSDINP 255 (301)
T ss_dssp CTTCCH-HHHHHHHHHTCEEEECHHHHHH-------------TTCC--CCCC---------HHHHHHTTCCEEECCCCBT
T ss_pred eecCcH-HHHHHHHHcCCCcccCccHHhh-------------hccc--ccCc---------HHHHHHCCCeEEEEeCCCC
Confidence 777665 7788899999999988875211 1111 1112 7899999999999999653
Q ss_pred CChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 371 FNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
.... ...+...++.++...|||++|||+++|+|||++||+++++|+
T Consensus 256 ~~~~-------------------~~~l~~~~~~~~~~~glt~~eal~~aT~~~A~~lG~~~~iG~ 301 (301)
T d2q09a2 256 GTAP-------------------IVSLRMAMNMACTLFGLTPVEAMAGVTRHAARALGEQEQLGQ 301 (301)
T ss_dssp TTBC-------------------CCCHHHHHHHHHHHHCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred CCCC-------------------cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCcccccCc
Confidence 2211 011233333455555799999999999999999999998885
|
| >d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=1.6e-16 Score=119.63 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=57.6
Q ss_pred EEEECcEEEcCCCc-eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc
Q 009282 55 ILIKGGTVVNAHHQ-QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (538)
Q Consensus 55 ~~i~n~~vv~~~~~-~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~ 117 (538)
++|+|++|+|++.. ++++|+|+||||.+|++..+.|+++++||++|++|+|||||.|+|....
T Consensus 2 ~al~n~rI~dg~~~~~~~~i~i~~g~I~~Ig~~~~~p~~~~viDl~G~~l~PGlid~hvH~~~~ 65 (85)
T d1yrra1 2 YALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPTLAAGKVANLTA 65 (85)
T ss_dssp EEEESSEEECSSCEESSEEEEEETTEEEEEEEGGGSCTTCCEEECTTCEEEESCCTTSBCCEEE
T ss_pred eEEEeeEEECCCCcEeccEEEEeccEEEEEcccccccceeEEEecCCcEEEcccEecceeeccc
Confidence 68999999999875 5789999999999999987778889999999999999999999998765
|
| >d1i0da_ c.1.9.3 (A:) Phosphotriesterase (parathion hydrolase, PTE) {Pseudomonas diminuta [TaxId: 293]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase (parathion hydrolase, PTE) species: Pseudomonas diminuta [TaxId: 293]
Probab=99.61 E-value=1.1e-15 Score=148.36 Aligned_cols=288 Identities=14% Similarity=0.023 Sum_probs=169.4
Q ss_pred cccccccccccccCCC------------CChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcccceeee
Q 009282 106 GGIDPHTHLAMEFMGS------------ETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYG 172 (538)
Q Consensus 106 GlID~H~H~~~~~~~~------------~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 172 (538)
||||+|+|+.....+. ...++..+.++++.++|||+++++...... ......+...+.+.+.+..++
T Consensus 16 G~~d~H~Hl~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~a~~~GvttvVd~~~~~~~~d~~~l~~~~~~~~~~~~~~~g 95 (331)
T d1i0da_ 16 GFTLTHEHICGSSAGFLRAWPEFFGSRKALAEKAVRGLRRARAAGVRTIVDVSTFDIGRDVSLLAEVSRAADVHIVAATG 95 (331)
T ss_dssp CSEEEEECSEECCTTHHHHCGGGGSCHHHHHHHHHHHHHHHHHTTCCEEEECCCGGGTCCHHHHHHHHHHHTCEEECEEE
T ss_pred CCEeeeeCcccCcccccccCccccccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCcCCHHHHHHHHHhcCCCEEEEEE
Confidence 9999999997652211 012333445677889999999998533322 333333333334444556666
Q ss_pred eeeeeecC-ChhhHHHHHHHHH---Hc-------CCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009282 173 FHMAITKW-DEVVSDEMEVMVK---EK-------GINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (538)
Q Consensus 173 ~~~~~~~~-~~~~~~~~~~~~~---~~-------g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~ 241 (538)
++...... .+...+++..+.. .. +....+...... ......+.+++.++.+++.|.++.+|+......
T Consensus 96 ~h~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~g~pv~~h~~~~~~~ 174 (331)
T d1i0da_ 96 LWFDPPLSMRLRSVEELTQFFLREIQYGIEDTGIRAGIIKVATTGK-ATPFQELVLKAAARASLATGVPVTTHTAASQRD 174 (331)
T ss_dssp CCSCCCHHHHTCCHHHHHHHHHHHHHTCBTTTTBCCSEEEEECSSS-CCHHHHHHHHHHHHHHHHHCCCEEEECCGGGTH
T ss_pred EecCcCcccCccCHHHHHHHHHHhhhhhhccccCccceeecccccc-ccHHHHHHHHHHHHHHHHhCCeEEeeccchhhh
Confidence 65432211 1112223332221 11 122333332211 111125667788888999999999998643211
Q ss_pred HHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccccccc
Q 009282 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (538)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~ 321 (538)
...+.+.+..+.....++++.|++.....+.++.+++.|..+..+.+++++.+
T Consensus 175 ---------------------------~~~~~~~~~~~~~~~~~~~i~H~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ 227 (331)
T d1i0da_ 175 ---------------------------GEQQAAIFESEGLSPSRVCIGHSDDTDDLSYLTALAARGYLIGLDHIPHSAIG 227 (331)
T ss_dssp ---------------------------HHHHHHHHHHTTCCGGGEEECSGGGCCCHHHHHHHHHTTCEEEECCTTCCCTT
T ss_pred ---------------------------hhhhhhhhhhcccCCcceEEEecCCcchHHHHHHHHhcCCceeecceeeeccc
Confidence 12223333333444567789999865556888889999999999999988876
Q ss_pred CcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCC--ceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHH
Q 009282 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGI--LQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv--~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~ 399 (538)
....... .+...++.|+.+ .+.+++++++|. .+.++||+++..+..... ......++|.+|++..+..
T Consensus 228 ~~~~~~~----~~~~~~~~~~~r----~~~~~~~l~~g~~d~i~~~tD~p~~~p~~~~~--~~~~~~~~g~~g~~~~l~~ 297 (331)
T d1i0da_ 228 LEDNASA----SALLGIRSWQTR----ALLIKALIDQGYMKQILVSNDWLFGFSSYVTN--IMDVMDRVNPDGMAFIPLR 297 (331)
T ss_dssp CTTCHHH----HHHHCSSCHHHH----HHHHHHHHHTTCGGGEEECCCCCSEECSSSTT--HHHHHHHHCTTGGGHHHHT
T ss_pred hhhhccc----cCCccCCChhhh----HHHHHHHHHhcCCCCEEECCCCCCcccccccC--CCccccccCCCcHHHHHHH
Confidence 6554422 112233334322 345677888877 458999986544321110 1122234566777766666
Q ss_pred HHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCC
Q 009282 400 VWDTMVESGQISVTDYVRLTSTECARIFNVYPR 432 (538)
Q Consensus 400 ~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~ 432 (538)
.+..+ ...|+|++++.++.|.||||+||++.+
T Consensus 298 ~~~~~-~~~gis~e~i~~i~~~NParlf~l~~k 329 (331)
T d1i0da_ 298 VIPFL-REKGVPQETLAGITVTNPARFLSPTLR 329 (331)
T ss_dssp HHHHH-HHTTCCHHHHHHHHTHHHHHHHSCCCC
T ss_pred HHHHH-HHcCCCHHHHHHHHHHHHHHHcCCCCC
Confidence 66444 455699999999999999999999654
|
| >d2ooda2 c.1.9.9 (A:73-397) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=99.60 E-value=9.7e-15 Score=140.83 Aligned_cols=274 Identities=14% Similarity=0.016 Sum_probs=143.2
Q ss_pred ccccccccccccccC-CCC--------------------ChhhHH----HHHHHHHhCCcEEEecccCCCCCCHHHHHHH
Q 009282 105 PGGIDPHTHLAMEFM-GSE--------------------TIDDFF----SGQAAALAGGTTMHIDFVIPINGSLTAGFEA 159 (538)
Q Consensus 105 PGlID~H~H~~~~~~-~~~--------------------~~~~~~----~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~ 159 (538)
|||||+|+|+..+.. |.. ..+... ..+..++.+||||++|+............+.
T Consensus 1 PGlID~H~Hl~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~Tt~~d~~~~~~~~~~~~~~~ 80 (325)
T d2ooda2 1 PGFIDGHIHLPQTRVLGAYGEQLLPWLQKSIYPEEIKYKDRNYAREGVKRFLDALLAAGTTTCQAFTSSSPVATEELFEE 80 (325)
T ss_dssp ECEEEEEEEGGGTTCTTCCSCCHHHHHHHHTHHHHGGGGSHHHHHHHHHHHHHHHHHTTEEEEEEECCSSHHHHHHHHHH
T ss_pred CCCcchhhCccccccccCCCCcHHHHHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHhCCeEEEeeccccCchhhHHHHHH
Confidence 999999999875421 111 111111 1234468899999999865543323333334
Q ss_pred HHHHhcccceeeeeeeee-e----cCChhhHHHHHHHHHH-cCCcEEEEEeeeCCCccCCHHHHHHHHH-HHHhcCCeEE
Q 009282 160 YEKKAKNSCMDYGFHMAI-T----KWDEVVSDEMEVMVKE-KGINSFKFFMAYKGSFMINDELLIEGFK-RCKSLGALAM 232 (538)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~-~g~~~ik~~~~~~~~~~~~~~~l~~~~~-~A~~~g~~v~ 232 (538)
......+........... . ...++..+...+.... .....+............+......... .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (325)
T d2ooda2 81 ASRRNMRVIAGLTGIDRNAPAEFIDTPENFYRDSKRLIAQYHDKGRNLYAITPRFAFGASPELLKACQRLKHEHPDCWVN 160 (325)
T ss_dssp HHHHTCCEEECCEECCSSSCTTTCCCHHHHHHHHHHHHHHHTTBTTEEEEEEECBGGGCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HHhhcccceeeeeccCCCCCcccccCHHHHHHHHHHHHHhhccccceeeeeecccccccCHHHHHHHHhhHhhccCCcee
Confidence 333333322222111111 1 1112333334333322 2223333333333444556666555544 4556788999
Q ss_pred EEcCCh-hhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEE
Q 009282 233 VHAENG-DAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVI 311 (538)
Q Consensus 233 ~H~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~ 311 (538)
.|+... .++....+ ..+... .....+......+......|+..... +.+..++..+..+.
T Consensus 161 ~~~~e~~~e~~~~~~---~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 221 (325)
T d2ooda2 161 THISENPAECSGVLV---EHPDCQ---------------DYLGVYEKFDLVGPKFSGGHGVYLSN-NEFRRMSKKGAAVV 221 (325)
T ss_dssp EECSCCHHHHHHHHH---HCTTCS---------------SHHHHHHTTTCCSTTEEEECCTTCCH-HHHHHHHHHTCEEE
T ss_pred eehhccHHHHHHHHH---hcccCc---------------chHHHHHhcCcccCceeeeeeeeech-hhhhhhhccccccc
Confidence 998543 33332222 122111 01111222334456778888888776 78888888888777
Q ss_pred EeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCc
Q 009282 312 GEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVN 391 (538)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~ 391 (538)
.++....... ..+ ++ .......+.|+.++++||..+.+... ++ .
T Consensus 222 ~~~~~~~~~~-------------~~~---~~-------~~~~~~~~~gv~~~~gtD~~~~~~~~-~~-----~------- 265 (325)
T d2ooda2 222 FCPCSNLFLG-------------SGL---FR-------LGRATDPEHRVKMSFGTDVGGGNRFS-MI-----S------- 265 (325)
T ss_dssp ECHHHHHHTT-------------CCC---CC-------HHHHTCTTSCCEEEECCCBTTBSCCC-HH-----H-------
T ss_pred cccchhhccc-------------ccc---Cc-------HHHHHHhhcCCceEeecCcccCCCcc-HH-----H-------
Confidence 6665421110 111 01 11122346799999999975433221 00 0
Q ss_pred chhhhHHHHH------------------HHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCcc
Q 009282 392 GIEERMHLVW------------------DTMVESGQISVTDYVRLTSTECARIFNVYPRKGA 435 (538)
Q Consensus 392 g~~~~~~~~~------------------~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~Gs 435 (538)
++.....+ ...+...++|+.|+|++||+|||++||+++++||
T Consensus 266 --~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~eal~~AT~ngA~aLG~~d~iGS 325 (325)
T d2ooda2 266 --VLDDAYKVGMCNNTLLDGSIDPSRKDLAEAERNKLSPYRGFWSVTLGGAEGLYIDDKLGN 325 (325)
T ss_dssp --HHHHHHHHHHHHHHHSSSSSCGGGCCHHHHHHTCCCHHHHHHHTTHHHHHHTTCTTTSSS
T ss_pred --HHHHHHHHHHhhcccccccccchhhhhhccccCCCCHHHHHHHHHHHHHHHhCCCcccCc
Confidence 11111100 0122356799999999999999999999999997
|
| >d2p9ba1 b.92.1.10 (A:9-70,A:395-450) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.59 E-value=6.4e-16 Score=123.02 Aligned_cols=66 Identities=24% Similarity=0.342 Sum_probs=56.5
Q ss_pred cccEEEECcEEEcCCCc----eeeeEEEe-CCEEEEecCCC--CCCCCceEEecCCCeeeccccccccccccc
Q 009282 52 SSKILIKGGTVVNAHHQ----QIADVYVE-DGIVVAVQPNI--NVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~----~~~~V~I~-~grI~~Vg~~~--~~~~~~~vID~~G~~v~PGlID~H~H~~~~ 117 (538)
+..++|+|++|+|++.. ++++|+|+ ||||.+||+.. ..+.++++||++|++|||||||+|+|+...
T Consensus 3 ~~p~ai~na~iit~d~~~~v~~~~~ilI~~dG~I~~vg~~~~~~~~~~~~viD~~Gk~v~PGlid~H~Hl~~~ 75 (118)
T d2p9ba1 3 VEPFALAHATIVTGDKAGTILRNMTIVVGADGRIEQVAPSIETSIPAEYHYLDGTGKIVMLEVGKSADLLVLN 75 (118)
T ss_dssp CCCEEEEEEEEECCCTTCCEEEEEEEEECTTSBEEEEEEGGGCCCCTTCEEEECTTCEEECCTTSBCCEEEES
T ss_pred CccEEEEeeEEEeCCCCCceeeeEEEEEecCCeEEEEcccccccccceeEEEeccCcEEEeeecceeEEEEec
Confidence 45689999999998742 68999996 69999999753 345678999999999999999999999876
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.59 E-value=7.7e-16 Score=128.11 Aligned_cols=108 Identities=33% Similarity=0.637 Sum_probs=102.1
Q ss_pred HhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCC
Q 009282 421 TECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGS 500 (538)
Q Consensus 421 ~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~ 500 (538)
.++|+.+...++.+.|.+|..|||+++|++..+.+.++++.+...|+||+|+.+.+.|.+||++|++||++|+++...+.
T Consensus 39 ~~~~~iida~gk~v~i~~G~dad~~i~dp~~~~~i~~~~~~sk~~~spfeG~~~~G~v~~TivrG~iV~~~g~~~~~~g~ 118 (150)
T d2ftwa1 39 KEGIKVVDATDKLLLIDVGCDGDIVIWDPNQSKTISKDTHHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSDNKLSCVKGS 118 (150)
T ss_dssp CSSCCEEECTTCEEECSTTSBCCEEEEEEEEEEECCTTTCCCSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTC
T ss_pred CCccEEEecccceeeeecCccCceEEEecCceEEEeccccccccccccCcCCEEEEEEeEEEECCEEEEECCEEeecCCC
Confidence 46899999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeecCCCccccccchhhhHHHhhhcc
Q 009282 501 GKYIEMRPFNYLFHGLDKADAKYLSSLQ 528 (538)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (538)
|+++++++++++++++.++|...-.++|
T Consensus 119 Grfl~R~~~~~~~~~~~~~~~~~~~~~~ 146 (150)
T d2ftwa1 119 GRFVPRPPFGPVFDGIEQRDKVRNELLR 146 (150)
T ss_dssp CCBCCCCSSCGGGTTHHHHHHHHCGGGG
T ss_pred ceEccCCCCchHHHHHHHHHHHhCcccc
Confidence 9999999999999999999988776654
|
| >d2p9ba2 c.1.9.17 (A:71-394) Uncharacterized protein BL1453 {Bifidobacterium longum [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Uncharacterized protein BL1453 species: Bifidobacterium longum [TaxId: 216816]
Probab=99.59 E-value=5e-15 Score=140.91 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 350 ~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
..++.++++|+++++|||....... ...+...+..+++..|+|+.|||+++|+|||++||+
T Consensus 258 ~~~~~~~~~Gv~v~~GtD~~~~~~~-------------------~~~l~~el~~~~~~~Gls~~eaL~~aT~n~A~~lgl 318 (324)
T d2p9ba2 258 SGARQAHEAGLMIGVGTDTGMTFVP-------------------QYATWRELELLVAYAGFSPAEALHAATAVNASILGV 318 (324)
T ss_dssp HHHHHHHHTTCCBCCCCCTTSTTSC-------------------TTCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTC
T ss_pred HHHHHHHHcCCeEEEEeCCCCCcCh-------------------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCC
Confidence 4567899999999999996432111 112333444455555799999999999999999999
Q ss_pred CCCCcc
Q 009282 430 YPRKGA 435 (538)
Q Consensus 430 ~~~~Gs 435 (538)
++++||
T Consensus 319 ~d~~GS 324 (324)
T d2p9ba2 319 DAETGS 324 (324)
T ss_dssp TTTSSS
T ss_pred CcCcCc
Confidence 999997
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.56 E-value=9.4e-16 Score=126.49 Aligned_cols=101 Identities=32% Similarity=0.579 Sum_probs=96.0
Q ss_pred hHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCc
Q 009282 422 ECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSG 501 (538)
Q Consensus 422 ~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~ 501 (538)
++|+.+.....++.+.+|..|||+++|++..+.+.++++.+...|+||+|+.+.++|.+||++|++||++|+++...+.|
T Consensus 39 ~~a~vIDa~G~~v~~~~G~dAdl~i~Dp~~~~~i~~~~~~sk~~~tpf~G~~~~G~v~~Ti~rG~~v~~~g~~~~~~g~G 118 (142)
T d1kcxa1 39 GGVKTIEANGRMVIIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGNISVSKGMG 118 (142)
T ss_dssp SSCEEEECTTCEEECCTTSBCCEEEEEEEEEEECCTTTCSSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCC
T ss_pred ccceeechhhcceeecccccceEEEEeccceEEEcchhccccCCccCCcCCEEEEEEEEEEECCEEEEECCEEeEcCCCC
Confidence 67889999889999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred eEeecCCCc-cccccchhhhHH
Q 009282 502 KYIEMRPFN-YLFHGLDKADAK 522 (538)
Q Consensus 502 ~~~~~~~~~-~~~~~~~~~~~~ 522 (538)
+++++++++ +++++.+++|..
T Consensus 119 ~fl~r~~~~~~~~~~~~~~~~~ 140 (142)
T d1kcxa1 119 RFIPRKPFPEHLYQRVRIRSKV 140 (142)
T ss_dssp CBCCCCSSCHHHHHHHHHHHHH
T ss_pred eEecCCCCChHHHHHHHHHHhh
Confidence 999999999 699999999864
|
| >d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of urease {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Klebsiella aerogenes [TaxId: 28451]
Probab=99.51 E-value=2.8e-15 Score=124.92 Aligned_cols=92 Identities=22% Similarity=0.266 Sum_probs=70.9
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCC----------CCCCceEEecCCCeeeccccccccccccccCCC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN----------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFMGS 121 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~----------~~~~~~vID~~G~~v~PGlID~H~H~~~~~~~~ 121 (538)
..|++|+|+.|++..+...+||.|+||||++||.... ...++++||++|++|+||+||+|+|+..+ .
T Consensus 64 ~lDlvI~n~~Ivd~~Gi~kaDIgIkdGrI~~IGkagnpd~~d~v~l~~g~~tevIdaeG~ivtpG~ID~HvHf~~p---~ 140 (181)
T d1ejxc1 64 CVDLVLTNALIVDHWGIVKADIGVKDGRIFAIGKAGNPDIQPNVTIPIGAATEVIAAEGKIVTAGSIEVGKLADLV---V 140 (181)
T ss_dssp SCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECEECTTTCSSCCEECCTTCEEEECTTCEEEECSSCTTSBCCEE---E
T ss_pred cccEEEEccEEcCCCCcEEEEEEEeCCEEEEEecCCCccccCCceeeeccceEEecCCCcEEeeeeeecceEEeee---e
Confidence 5689999999999988899999999999999997321 23478999999999999999999999887 2
Q ss_pred CChhhHHHHHHHHHhCCcEEEeccc
Q 009282 122 ETIDDFFSGQAAALAGGTTMHIDFV 146 (538)
Q Consensus 122 ~~~~~~~~~~~~~l~~GvTt~~d~~ 146 (538)
..++.+......++..|++++..|.
T Consensus 141 ~~~eal~sG~tt~igGG~~~~gpm~ 165 (181)
T d1ejxc1 141 WSPAFFGVKPATVIKGGMIAIAPMG 165 (181)
T ss_dssp ECGGGTTTSCSEEEETTEEEEEEEC
T ss_pred eehhhhccchheEEeCCceEEEECC
Confidence 3344443333344555665566554
|
| >d2r8ca2 c.1.9.18 (A:58-368) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.50 E-value=2.4e-14 Score=135.99 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=47.3
Q ss_pred cHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHc
Q 009282 348 HNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIF 427 (538)
Q Consensus 348 ~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~l 427 (538)
....++.+.++||++++|||....+.. .....++ ++.. |+|+.|||+++|+|||++|
T Consensus 248 ~~~~~~~l~~aGv~v~~GTD~~~~~~~---------------------~~~~el~-~~~~-gls~~eaL~~ATi~~A~aL 304 (311)
T d2r8ca2 248 GLHSIEIMKRAGVKMGFGTDLLGEAQR---------------------LQSDEFR-ILAE-VLSPAEVIASATIVSAEVL 304 (311)
T ss_dssp HHHHHHHHHHTTCEECCCCCCCGGGGG---------------------GTTHHHH-HHTT-TSCHHHHHHHTTHHHHHHT
T ss_pred hhHHHHHHHHCCCeEEEEeCCCCCchH---------------------HHHHHHH-HHHc-CCCHHHHHHHHHHHHHHHH
Confidence 356789999999999999996432211 0111221 2233 6999999999999999999
Q ss_pred CCCCCCc
Q 009282 428 NVYPRKG 434 (538)
Q Consensus 428 g~~~~~G 434 (538)
|+++++|
T Consensus 305 g~~d~iG 311 (311)
T d2r8ca2 305 GMQDKLG 311 (311)
T ss_dssp TCTTTSS
T ss_pred CCCcCCC
Confidence 9999887
|
| >d2qs8a2 c.1.9.18 (A:64-373) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.50 E-value=2.6e-13 Score=128.41 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 350 KALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 350 ~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
.+++.++++|+++++|||+...+.. .+...+..+++ .|||+.|||+++|+|||++||+
T Consensus 248 ~~~~~l~~~Gv~v~lGTD~~~~~~~---------------------~~~~el~~~~~-~Gls~~eaL~~aT~~~A~~LGl 305 (310)
T d2qs8a2 248 DTFRKAYEKGVKIAFGTDAGVQKHG---------------------TNWKEFVYMVE-NGMPAMKAIQSATMETAKLLRI 305 (310)
T ss_dssp HHHHHHHHHTCCBCCCCCBTTBCTT---------------------CTTHHHHHHHH-TTCCHHHHHHHTTHHHHHHTTC
T ss_pred HHHHHHHHCCCeEEEecCCCCCCcc---------------------HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCc
Confidence 5578899999999999996432211 01122223334 4599999999999999999999
Q ss_pred CCCCc
Q 009282 430 YPRKG 434 (538)
Q Consensus 430 ~~~~G 434 (538)
++++|
T Consensus 306 ~d~iG 310 (310)
T d2qs8a2 306 EDKLG 310 (310)
T ss_dssp TTTSS
T ss_pred CCCcC
Confidence 99887
|
| >d3be7a2 c.1.9.18 (A:57-359) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.49 E-value=1.7e-14 Score=136.40 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 349 NKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 349 ~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
...++.++++|+++++|||+...+... +...+..+++ .|+|+.|||+++|+|||++||
T Consensus 241 ~~~~~~l~~aGv~v~lGTD~~~~~~~~---------------------~~~el~~~~~-~Gls~~eaL~~aT~n~A~~lG 298 (303)
T d3be7a2 241 RENFMNAHRRGAIITFGTDAGIFDHGD---------------------NAKQFAYMVE-WGMTPLEAIQASTIKTATLFG 298 (303)
T ss_dssp HHHHHHHHHHTCCEECCCCBTTBCTTC---------------------GGGHHHHHHH-TTCCHHHHHHTTTHHHHHHHT
T ss_pred HHHHHHHHHCCCeEEEEeCCCCcccHH---------------------HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhC
Confidence 355788999999999999964332110 0111223334 459999999999999999999
Q ss_pred CCCCCc
Q 009282 429 VYPRKG 434 (538)
Q Consensus 429 ~~~~~G 434 (538)
+ +++|
T Consensus 299 l-~D~G 303 (303)
T d3be7a2 299 I-ENIG 303 (303)
T ss_dssp C-SSCS
T ss_pred C-cccC
Confidence 9 4676
|
| >d4ubpc2 c.1.9.2 (C:132-434,C:484-570) alpha-subunit of urease, catalytic domain {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Bacillus pasteurii [TaxId: 1474]
Probab=99.48 E-value=1.2e-13 Score=126.30 Aligned_cols=271 Identities=15% Similarity=0.115 Sum_probs=160.5
Q ss_pred cccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC--------CHHHHHHHHHHHhcccceeeeeeeee
Q 009282 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAI 177 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (538)
|-||+|+|+..+ +....++.+||||++..+..+.. .....+....+.....++++++....
T Consensus 1 GgiDtHvHfi~P-----------qq~~~al~sGiTT~~GgGtGpa~gt~att~tpG~~~i~~ml~a~d~~P~N~g~~gkG 69 (390)
T d4ubpc2 1 GGIDTHVHFINP-----------DQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKG 69 (390)
T ss_dssp CEEEEEEECCCT-----------THHHHHHHTTEEEEEEECCSSCHHHHHSSCCCHHHHHHHHHHHHTTCSSEEEEEEEC
T ss_pred CCccccccccCH-----------HHHHHHHhcCCeeeecCccCCCCCCCCcccCCCHHHHHHHHHhhhhCCcceeeeecc
Confidence 679999999876 12567899999999966544321 34566778888888899999998765
Q ss_pred ecCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh---HHHHHHHHHHcCCC
Q 009282 178 TKWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA---VFEGQKRMIELGIT 254 (538)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~---~~~~~~~~~~~g~~ 254 (538)
.... ...+.+.. +.|+.++|+--+ +..++..+...+..|.++++++.+|..+.++ +++.++
T Consensus 70 n~s~---~~~l~eqi-~aGa~GlKiHED----wGatpa~id~~L~vad~~dvqv~iHtDtlNE~gfve~T~~-------- 133 (390)
T d4ubpc2 70 HGSS---IAPIMEQI-DAGAAGLKIHED----WGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLR-------- 133 (390)
T ss_dssp CCSS---HHHHHHHH-HHTCCEEEEEGG----GCCCHHHHHHHHHHHHHHTCEEEEECCTTCSSCCHHHHHH--------
T ss_pred ccCC---hHHHHHHH-Hhhhheeecccc----cccCHHHHHHHHHHhhccCceEEEecCCcccceehhhHHH--------
Confidence 5443 34455666 789999999654 4568999999999999999999999855443 222222
Q ss_pred CcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHH---HHHHHHHHHHcCCcEEEecccccc------------
Q 009282 255 GPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMD---AMEEIAKARKAGQRVIGEPVVSGL------------ 319 (538)
Q Consensus 255 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~---~~~~i~~~~~~g~~v~~~~~~~~~------------ 319 (538)
...|..+|..|...+. ..+.++..... +|.........
T Consensus 134 -------------------------a~~gRtiH~~HtEGaGGGHaPDii~~~g~~--nvLpsSTnPT~Pyt~nt~~Ehld 186 (390)
T d4ubpc2 134 -------------------------AINGRVIHSFHVEGAGGGHAPDIMAMAGHP--NVLPSSTNPTRPFTVNTIDEHLD 186 (390)
T ss_dssp -------------------------HHTTCCEEETTTTSTTSSSTTTGGGGGGST--TEEEBCCSTTSSCBTTHHHHHHH
T ss_pred -------------------------HhCCceeecccCCCCCCCCCchhHHhcCCC--cccCCCCCCCCCCccCchhhhcC
Confidence 2234455665554321 11222221111 23332222111
Q ss_pred ------ccCcccccCCCcccccceeecCCCCCcccHHHHH-HHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcc
Q 009282 320 ------VLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQ-AALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNG 392 (538)
Q Consensus 320 ------~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~-~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g 392 (538)
+++++.-++..|.. .|.+....+.. -+++.|..-.++||+........- ..+
T Consensus 187 M~MvcHhL~~~ipeDvafAe---------sRiR~eTiaAEdvLHD~GaiSi~sSDsQaMGRvgEv-----i~R------- 245 (390)
T d4ubpc2 187 MLMVCHHLKQNIPEDVAFAD---------SRIRPETIAAEDILHDLGIISMMSTDALAMGRAGEM-----VLR------- 245 (390)
T ss_dssp HHHHHHTCCTTSHHHHHHHH---------HHSCHHHHHHHHHHHHTTSSCBCCCCBTTSSCTTCH-----HHH-------
T ss_pred eEEeeccCCCCChhhHHHHh---------hcccchhhhhHHHhhhcCceeeeccCcccccccchH-----HHh-------
Confidence 11111111111110 11112223333 366779999999998755433210 111
Q ss_pred hhhhHHHHHHHhh-hcCCC-------CH---HHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceee
Q 009282 393 IEERMHLVWDTMV-ESGQI-------SV---TDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEI 455 (538)
Q Consensus 393 ~~~~~~~~~~~~~-~~~~l-------s~---~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~ 455 (538)
.+.... ++. ..|.| +. ..-+...|+|||.+.|+++.+||||+||.||.++|.......+
T Consensus 246 ---twq~A~-kmk~qrG~l~~d~~~~DN~RvkRYiAKyTINPAIahGish~VGSvE~GKlADG~a~~~tsvtFV 315 (390)
T d4ubpc2 246 ---TWQTAD-KMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEGKFADGDLIHDTNITFM 315 (390)
T ss_dssp ---HHHHHH-HHHHHHCSCTTCCSSCCHHHHHHHHHTTTHHHHHHHTCTTTSSSCCTTSBCCTTHHHHSCEEEE
T ss_pred ---HHHHHH-HHHHhccCCCCccccCCCchhhhcccccccChhHhcCcccccCcccCCcccCCccccCceEEEE
Confidence 111111 111 11212 22 2456778999999999999999999999999776665444333
|
| >d1onwa2 c.1.9.13 (A:63-346) Isoaspartyl dipeptidase, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Isoaspartyl dipeptidase, catalytic domain domain: Isoaspartyl dipeptidase, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=7.6e-13 Score=124.39 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=42.7
Q ss_pred CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCCCc
Q 009282 359 GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPRKG 434 (538)
Q Consensus 359 Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~~G 434 (538)
+..+.++||+.+.....+.. ....+.+..+....+.. +..++..+|+|++++|+++|+|||++||+ +++|
T Consensus 215 ~~~~~~~td~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~gls~~~al~~aT~npAr~lGL-~~kG 284 (284)
T d1onwa2 215 LARVTLSSDGNGSQPFFDDE----GNLTHIGVAGFETLLET-VQVLVKDYDFSISDALRPLTSSVAGFLNL-TGKG 284 (284)
T ss_dssp GGGEEEECCBTCC-----------------CCCCSHHHHHH-HHHHHHHHCCCHHHHHGGGTHHHHHHTTC-TTCS
T ss_pred CceEEEEecccccccccccc----ccccCCCCChHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHHHhCC-CCCC
Confidence 44778999987655443321 22233344444444333 33567777799999999999999999999 5566
|
| >d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Uncharacterized protein EAJ56179 species: Unidentified organism [TaxId: 32644]
Probab=99.48 E-value=2.6e-14 Score=112.08 Aligned_cols=60 Identities=23% Similarity=0.434 Sum_probs=53.0
Q ss_pred cEEEECcEEEcCCCc---eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccc
Q 009282 54 KILIKGGTVVNAHHQ---QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTH 113 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~---~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H 113 (538)
+++|+|++|+|+.+. ++.+|+|+||+|++|++....+.++++||++|++|+|||||.|.|
T Consensus 2 ~~l~~n~~v~d~~~~~~~~~~~I~I~~g~I~~i~~~~~~~~~~~vID~~G~~v~PGlid~h~~ 64 (102)
T d2r8ca1 2 TFLFRNGALLDPDHPDLLQGFEILIEDGFIREVSDKPIKSSNAHVIDVKGKTIMPRIVPGAHA 64 (102)
T ss_dssp EEEEEEEEECCTTSSSCEEEEEEEEESSBEEEEESSCCCCSSCEEEECTTCEEEESCCTTSBC
T ss_pred eEEEECeEEECCCCCCcccCcEEEEECCEEEEccccCCCCCCCEEEeCCCCEEECceeeheee
Confidence 589999999998652 578999999999999987666678999999999999999988774
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=99.47 E-value=2.4e-14 Score=122.13 Aligned_cols=67 Identities=25% Similarity=0.415 Sum_probs=60.6
Q ss_pred CcccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCee---eccccccccccccc
Q 009282 51 SSSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFV---MPGGIDPHTHLAME 117 (538)
Q Consensus 51 ~~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v---~PGlID~H~H~~~~ 117 (538)
+|.+++|+|++|+|++.....+|+|+||||++|+++...+.++++||++|++| +|||||+|.|++.+
T Consensus 1 pm~dllikn~~v~~~~~~~~~di~i~~g~I~~ig~~~~~~~~~~viDa~G~~V~p~~pg~~d~Hih~~~~ 70 (156)
T d2fvka1 1 PIYDLIIKNGIICTASDIYAAEIAVNNGKVQLIAASIDPSLGSEVIDAEGAFITPILPGVSDADLVIWYP 70 (156)
T ss_dssp CCEEEEEESCEEECSSCEEECEEEEETTEEEEEESCCCGGGEEEEEECTTCEEEECCTTTSBCCEEEECC
T ss_pred CCccEEEECCEEECCCCCEEEEEEEECCEEEEecCCCCCCCCCEEEECCCCEEeeecccccccceEEEee
Confidence 37799999999999988889999999999999999776666789999999997 69999999999876
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.44 E-value=8.1e-14 Score=112.93 Aligned_cols=62 Identities=26% Similarity=0.515 Sum_probs=55.8
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccccccccccc
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~ 116 (538)
+|++|+|++|+++++...++|+|+||||++||+... ++.++||++|++|+||+||.|+|+..
T Consensus 1 mDllikn~~v~~~~~~~~~di~I~dg~I~~ig~~~~--~~~~~iDa~G~~v~Pg~i~~~~~~~i 62 (127)
T d1nfga1 1 MDIIIKNGTIVTADGISRADLGIKDGKITQIGGALG--PAERTIDAAGRYVFPIAVGSDADIVL 62 (127)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEETTEEEEESSCCC--CCSEEEECTTCEEEECSTTSBCCEEE
T ss_pred CcEEEECCEEECCCCCEEEEEEEECCEEEEeeCCCC--CceEEEEeeceEEeeeccccccccee
Confidence 479999999999988888999999999999998653 36899999999999999999999754
|
| >d2icsa2 c.1.9.14 (A:55-321) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenine deaminase-like domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.42 E-value=6.6e-13 Score=122.32 Aligned_cols=129 Identities=13% Similarity=-0.010 Sum_probs=66.3
Q ss_pred cccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeee--eec----
Q 009282 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMA--ITK---- 179 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---- 179 (538)
||||+|+|+..+ +...++.. .+.++++||||++|+............+.................. ...
T Consensus 1 GlID~H~H~~~~--~~~~~~~~---~~~~l~~GvTTv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (267)
T d2icsa2 1 GWIDDHVHCFEK--MALYYDYP---DEIGVKKGVTTVIDAGTTGAENIHEFYDLAQQAKTNVFGLVNISKWGIVAQDELA 75 (267)
T ss_dssp CEEEEEECCCTT--SSSSCCCH---HHHTGGGTEEEEEEESSSCTTTHHHHHHHHHTSSSEEEEEEESSTTTTSSSCTTS
T ss_pred CeEEeCcCCCCC--CCcchhhH---HHHHhCCeeEEEECCCCCChhHHHHHHHHHHhhhcchhhcccccccccccccccC
Confidence 899999999766 44455544 5678999999999997655443333333222211111110000000 000
Q ss_pred -CChhhHHHHHHHHHHcCCcEEEEEeeeCC---CccC-CHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009282 180 -WDEVVSDEMEVMVKEKGINSFKFFMAYKG---SFMI-NDELLIEGFKRCKSLGALAMVHAENGDA 240 (538)
Q Consensus 180 -~~~~~~~~~~~~~~~~g~~~ik~~~~~~~---~~~~-~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (538)
............. ..+.+.++.+..... .... ..+........+...++.+..|......
T Consensus 76 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 140 (267)
T d2icsa2 76 DLSKVQASLVKKAI-QELPDFVVGIKARMSRTVIGDNGITPLELAKQIQQENQEIPLMVHIGSAPP 140 (267)
T ss_dssp SGGGCCHHHHHHHH-HHCTTTEEEEEEEESHHHHTTCTTHHHHHHHHHHHTTTTCCEEEEECSSSS
T ss_pred ChhhcCHHHHHHHH-hhhhhhhhhhhhhhcccccccCCcHHHHHHHHHHHHhcccceeeecccchh
Confidence 0111234444444 445555544433211 1122 2344444455677789999999965443
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=99.41 E-value=1.7e-13 Score=111.49 Aligned_cols=63 Identities=35% Similarity=0.518 Sum_probs=54.2
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~ 117 (538)
+++|+|++|++++....+||+|+||+|++|++..+.+ ++++||++|++|+||+||.|+|+...
T Consensus 1 k~likn~~i~~~~~~~~~di~I~~g~I~~ig~~~~~~-~~~viDa~g~~v~Pg~i~~~~~~~i~ 63 (127)
T d1ynya1 1 KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQLSVN-GAEEIDATGCYVIPIAVGSDADIVIF 63 (127)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEECC-----CCEEEECTTSEEEECSTTSBCCEEEE
T ss_pred CEEEECcEEECCCCCEEEeEEEECCEEEEecCCCCCC-CCEEEEhhhceeecccccccchhhhh
Confidence 3799999999998888999999999999999877654 57999999999999999999998643
|
| >d1e9yb2 c.1.9.2 (B:132-431,B:481-569) alpha-subunit of urease, catalytic domain {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Helicobacter pylori [TaxId: 210]
Probab=99.39 E-value=1.9e-12 Score=118.24 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=87.1
Q ss_pred cccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC--------CHHHHHHHHHHHhcccceeeeeeeeeec
Q 009282 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (538)
Q Consensus 108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (538)
||+|+|+..+ +....+|.+||||++..+..+.. .....+....+.....++++++......
T Consensus 2 iDtHvHfi~P-----------qq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~i~~ml~a~d~~P~N~g~~gkGn~ 70 (389)
T d1e9yb2 2 IDTHIHFISP-----------QQIPTAFASGVTTMIGGGTGPADGTNATTITPGRRNLKWMLRAAEEYSMNLGFLAKGNA 70 (389)
T ss_dssp EEEEEETTCT-----------THHHHHHHTTEEEEEEECCSSCHHHHHCCCCCHHHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred ccccccccCH-----------HHHHHHHhcCCeEEecCccCCCCCCCccccCCChhHHHHHHHhhhcCCcceeeeeccCC
Confidence 8999999876 12667899999999966544321 3456677788888889999999876554
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009282 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (538)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (538)
... ..+.+.. +.|+.++|+--+ +..++..+...+..|.++++++.+|..+.++
T Consensus 71 s~~---~~l~eqi-~aGa~GlKiHED----wGatp~~Id~~L~vad~~dvqv~iHtDtlNE 123 (389)
T d1e9yb2 71 SND---ASLADQI-EAGAIGFKIHED----WGTTPSAINHALDVADKYDVQVAIHTDTLNE 123 (389)
T ss_dssp SCH---HHHHHHH-HTTCSEEEECGG----GCCCHHHHHHHHHHHHHTTCEEEECCCTTCS
T ss_pred CCh---HHHHHHH-Hhccceeecccc----ccCCHHHHHHHHHHHHhhCceEEecCCCccc
Confidence 443 4455666 789999998544 5568999999999999999999999965443
|
| >d1m7ja3 c.1.9.11 (A:62-419) N-acyl-D-aminoacid amidohydrolase, catalytic domain {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: D-aminoacylase, catalytic domain domain: N-acyl-D-aminoacid amidohydrolase, catalytic domain species: Alcaligenes faecalis [TaxId: 511]
Probab=99.38 E-value=3.4e-11 Score=116.83 Aligned_cols=274 Identities=16% Similarity=0.145 Sum_probs=158.1
Q ss_pred cccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCC------------------------CCHHHHHHHHH
Q 009282 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPIN------------------------GSLTAGFEAYE 161 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~------------------------~~~~~~~~~~~ 161 (538)
||||+|+|....+.. .+ .+...+.+||||++....... ....+.++.+.
T Consensus 1 GFID~HtH~D~~~~~--~p-----~~~~~~~~GVTT~v~GncG~s~aP~~~~~~~~~~~~l~~g~~~~w~t~~eyl~~le 73 (358)
T d1m7ja3 1 GFIDSHTHDDNYLLK--HR-----DMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALR 73 (358)
T ss_dssp CEEESSCCCTTHHHH--CT-----TCHHHHTTTEEEEEESCTTCCSCSEECSSCCTTGGGGCSSSCCEESSHHHHHHHHH
T ss_pred CceecCCCCchhhcc--CC-----CCcccccCCCceEEEeCCCCCcccCCcccccchHHHhccCCCcCcCCHHHHHHHHH
Confidence 899999998653110 11 134568999999984311100 01223333333
Q ss_pred HHhcccceeeeeeee------------eecCChhhHHHHHHHHH---HcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHh
Q 009282 162 KKAKNSCMDYGFHMA------------ITKWDEVVSDEMEVMVK---EKGINSFKFFMAYKGSFMINDELLIEGFKRCKS 226 (538)
Q Consensus 162 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~---~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~ 226 (538)
+.+ ..++++...+ ....+.+.+++|.++++ +.|+-++.....|.-....+.+++.++.+.+.+
T Consensus 74 ~~~--~~~Nva~~vgH~~lR~~vmg~~~~~at~~ei~~M~~ll~eal~~GA~G~Stgl~y~P~~~A~~~El~~lak~~~~ 151 (358)
T d1m7ja3 74 AAP--PAVNAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLIT 151 (358)
T ss_dssp HSC--CSSEEEEEEEHHHHHHHHCSCCSSCCCHHHHHHHHHHHHHHHHHTCCEEEEETTSGGGTTCCHHHHHHHHTHHHH
T ss_pred hcC--CccceeeecccccccccccCcccccCCHHHHHHHHHHHHHHHhcCCcccccCCcccccccCCHHHHHHHHHHHHh
Confidence 322 3344443322 12234566777777764 479999887766643334588999999999999
Q ss_pred cCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCH--------HH-H
Q 009282 227 LGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM--------DA-M 297 (538)
Q Consensus 227 ~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~--------~~-~ 297 (538)
+|..+..|...... ...+.+++++++++..|.++++.|.... .. .
T Consensus 152 ~g~~~~~h~r~~~~--------------------------~~~~~~~e~~~~a~~~g~~~~ish~~~~~~~~~~~~~~~~ 205 (358)
T d1m7ja3 152 HGGVYATHMRDEGE--------------------------HIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETL 205 (358)
T ss_dssp HTCEEEEECSCSST--------------------------THHHHHHHHHHHHHHHTSCEEECSCCCCSGGGTTTHHHHH
T ss_pred cCCeeeeeeccccc--------------------------cHHHHHHHHHHHHHHcCCceEecccccCCCcchhhHHHHH
Confidence 99999999955321 1135678888999999999999997431 11 1
Q ss_pred HHHHHHHHcCCcEEEeccccccc---cCcccccCCCcccccceeecCC---CCCc-------------------------
Q 009282 298 EEIAKARKAGQRVIGEPVVSGLV---LDDSWLWHSDFVTAAKYVMSPP---IRAS------------------------- 346 (538)
Q Consensus 298 ~~i~~~~~~g~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~---~r~~------------------------- 346 (538)
+.++ .++.|..|+++..|+... +..+... +.........++ +...
T Consensus 206 ~~~~-~a~~G~~i~~d~yPy~ag~t~l~~~~~~---~~~~~~~~~~~~~~~~~G~~l~eiA~~~g~~p~d~~~dl~~~~~ 281 (358)
T d1m7ja3 206 ALIE-AAMASQDVSLDAYPYVAGSTMLKQDRVL---LAGRTLITWCKPYPELSGRDLEEIAAERGKSKYDVVPELQPAGA 281 (358)
T ss_dssp HHHH-HHHHHSCEEEEECSCSCEEEECCCCTTT---TSSCEEEEEESSCGGGTTCBHHHHHHHTTSCHHHHHHHHCSEEE
T ss_pred HHHH-HHhcCCCcceeecCccccccccchhhhh---hccchhhhccccChhhccCcHHHHHHHcCCCHHHHHHHHhhccc
Confidence 2222 344688999998875432 1111110 000011111111 1100
Q ss_pred ----ccHHHHHHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhh-cCCCCHHHHHHHHhH
Q 009282 347 ----GHNKALQAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVE-SGQISVTDYVRLTST 421 (538)
Q Consensus 347 ----~~~~~l~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~-~~~ls~~eal~~aT~ 421 (538)
-..+.+..+++.-. ..+|||..++... ..+.....++..+.+.++ .+.||+++|++..|.
T Consensus 282 ~~~~~~e~~v~~~l~~p~-~~igSDgga~~~~--------------~hpr~~gtf~r~L~~~vRe~~~lsLeeAI~k~T~ 346 (358)
T d1m7ja3 282 IYFMMDEPDVQRILAFGP-TMIGSDGLPHDER--------------PHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTG 346 (358)
T ss_dssp EECCCCHHHHHHHHHSTT-EEECCCCCTTCSS--------------CCTHHHHHHHHHHCCCCCCTCSSCHHHHHHTTTH
T ss_pred hhhcCCHHHHHHHHhCCC-ceEEcCcccCCCC--------------cCCCCcccHHHHHHHHhcCCCcCCHHHHHHHHHH
Confidence 12344566666543 5677886543211 111112234445545554 455899999999999
Q ss_pred hHHHHcCCCCCCc
Q 009282 422 ECARIFNVYPRKG 434 (538)
Q Consensus 422 ~~A~~lg~~~~~G 434 (538)
.||+.||+ .++|
T Consensus 347 ~pA~~~Gl-~dRG 358 (358)
T d1m7ja3 347 LTAAKFGL-AERG 358 (358)
T ss_dssp HHHHHHTC-TTCS
T ss_pred HHHHHhCC-CCCC
Confidence 99999999 5565
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=99.36 E-value=3.5e-13 Score=103.53 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=53.7
Q ss_pred cEEEECcEEEcCCC---ceeeeEEEeCCEEEEecCCC-CCCCCceEEecCCCeeecccccccccccc
Q 009282 54 KILIKGGTVVNAHH---QQIADVYVEDGIVVAVQPNI-NVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (538)
Q Consensus 54 ~~~i~n~~vv~~~~---~~~~~V~I~~grI~~Vg~~~-~~~~~~~vID~~G~~v~PGlID~H~H~~~ 116 (538)
+++|+|++|+|+.+ ..+.+|+|+||+|++|++.. ..++++++||++|++|+|||+|.|+|...
T Consensus 2 ktlI~~g~liDg~~~~~~~~~~I~I~~~~I~~V~~~~~~~~~~~~vID~~G~~v~PGL~~g~~~d~~ 68 (96)
T d2qs8a1 2 KTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIKKGFISSNDFEDYIDLRDHTVLPSIESGKLADLI 68 (96)
T ss_dssp CEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEEESCCCCTTSSEEEEEEEEEEEESCCTTSBCCEE
T ss_pred eEEEECeEEEECCCCccccCceEEEECCEEEEEcccccCCCCCCEEEECCCCEeccCccccCcccEE
Confidence 47999999999864 26889999999999998753 33467899999999999999999999443
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.36 E-value=4e-13 Score=108.86 Aligned_cols=66 Identities=27% Similarity=0.374 Sum_probs=60.0
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccc---cccccccccc
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG---IDPHTHLAME 117 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGl---ID~H~H~~~~ 117 (538)
|.+++|+|++|++.+....+||+|+||||++|+++...+++.++||++|++|+||+ .|+|.|+..+
T Consensus 1 M~dllIkn~~iv~~~~~~~~Di~I~dgkI~~i~~~~~~~~a~~~iDa~g~~v~P~~~vG~DAD~~l~Dp 69 (126)
T d1gkra1 1 MFDVIVKNCRLVSSDGITEADILVKDGKVAAISADTSDVEASRTIDAGGKFVMPTLQVGSDADLLILDL 69 (126)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEETTEEEEEESCCTTCCEEEEEECTTCEEEESCCTTSBCCEEEEES
T ss_pred CccEEEECcEEECCCCCEEEeEEEECCEEEEEcCcCCcccceEEeehhhcccccceeecccchhheecc
Confidence 46799999999999888889999999999999998766667899999999999998 9999998876
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.34 E-value=4.8e-13 Score=108.80 Aligned_cols=63 Identities=27% Similarity=0.477 Sum_probs=55.2
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccccccccccc
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAM 116 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~ 116 (538)
|+++|+|++|++++....+||+|+||||++|++..+. .++++||++|++|+||+||.|.|+..
T Consensus 1 M~~likn~~v~~~~~~~~~Di~I~~g~I~~Ig~~~~~-~~~~vida~g~~v~P~~v~~~~~~~~ 63 (128)
T d1k1da1 1 MTKIIKNGTIVTATDTYEAHLLIKDGKIAMIGQNLEE-KGAEVIDAKGCYVFPIVVGSDADLVI 63 (128)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECSSBEEEEESSCCC-SSCCCEECTTCEEEECSTTSBCCEEE
T ss_pred CCEEEECcEEECCCCCEEeeEEEECCEEEEEcCCCCC-CceEEeeeCCCeEeeeecccccceEE
Confidence 4589999999999988899999999999999997764 35789999999999999977777643
|
| >d2bb0a1 b.92.1.10 (A:3-73,A:374-415) Imidazolonepropionase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Bacillus subtilis [TaxId: 1423]
Probab=99.32 E-value=5.2e-15 Score=118.37 Aligned_cols=68 Identities=18% Similarity=0.225 Sum_probs=58.7
Q ss_pred CCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 410 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 410 ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
++..++++++|.+||+++++++++|+|++||.|||+|||.+++..+ ||.-. ...|..||++|++||
T Consensus 46 l~~~~al~~aT~~~A~~l~~~~~~g~l~~g~~ad~~~~~~~~~~~~------------~y~~~--~~~v~~vi~~G~iv~ 111 (113)
T d2bb0a1 46 VFAGQKGAEAGYEADEIIDCSGRLVTLKAGRSADLVIWQAPNYMYI------------PYHYG--VNHVHQVMKNGTIVV 111 (113)
T ss_dssp EEEEETTTTTTCEEEEEEECTTCEEECSTTSBCCEEEESSSSTTHH------------HHSCS--SCCEEEEEETTEEEE
T ss_pred cCHHHHHHHHHHHHHHHhCCcCcEEEEcCCCcccEEEecCCchhhc------------hhhcC--CCChhEEEECCEEEE
Confidence 7888999999999999999999999999999999999998876544 33322 357999999999999
Q ss_pred EC
Q 009282 490 EN 491 (538)
Q Consensus 490 ~~ 491 (538)
..
T Consensus 112 ~r 113 (113)
T d2bb0a1 112 NR 113 (113)
T ss_dssp EC
T ss_pred eC
Confidence 74
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.32 E-value=6.4e-13 Score=106.79 Aligned_cols=63 Identities=30% Similarity=0.500 Sum_probs=56.4
Q ss_pred EEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccccc
Q 009282 55 ILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLAME 117 (538)
Q Consensus 55 ~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~~~ 117 (538)
++|+|++|++++...++||+|+||+|++||++...+.++++||++|++|+||..+.|.|....
T Consensus 2 llIkng~iv~~~~~~~~Di~I~~gkI~~Ig~~l~~~~~~~viDa~G~~v~~g~d~~~~d~~~~ 64 (123)
T d1gkpa1 2 LLIKNGEIITADSRYKADIYAEGETITRIGQNLEAPPGTEVIDATGKYVFPGADLVVYDPQYR 64 (123)
T ss_dssp EEEESCEEEETTEEEECEEEESSSBCCEEESCCCCCTTCEEEECTTSEEEECCCEEEEETTCC
T ss_pred EEEECcEEECCCCCEEeeEEEECCEEEEeecCCCCCcchhhhhhccceEecCcceEEEecccc
Confidence 799999999998888999999999999999988777788999999999999997777665543
|
| >d1yrra2 c.1.9.10 (A:54-350) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1.3e-11 Score=115.67 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=46.1
Q ss_pred HHHHhcCCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCCCCC
Q 009282 353 QAALATGILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNVYPR 432 (538)
Q Consensus 353 ~~~l~~Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~~~~ 432 (538)
..++++|+.+.++||..+.+ ...+...+..+++.+|||+.|||+++|+|||++||++++
T Consensus 237 ~~~~~~g~~~~~gtd~~~g~---------------------~~~l~~~~~~~v~~~gls~~~al~~aT~n~A~~LGldd~ 295 (297)
T d1yrra2 237 KTIYYRNGLCVDENGTLSGS---------------------SLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKR 295 (297)
T ss_dssp EEEEECSSCEECTTCCEEEB---------------------CCCHHHHHHHHHHHHCCCHHHHHHHHTHHHHHHTTCTTT
T ss_pred ceEEEeCCEEEecCCCCccc---------------------hhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCcC
Confidence 34567799999999964321 112334444567777799999999999999999999998
Q ss_pred Cc
Q 009282 433 KG 434 (538)
Q Consensus 433 ~G 434 (538)
+|
T Consensus 296 iG 297 (297)
T d1yrra2 296 LG 297 (297)
T ss_dssp SS
T ss_pred cC
Confidence 87
|
| >d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=99.24 E-value=1e-11 Score=84.44 Aligned_cols=53 Identities=28% Similarity=0.438 Sum_probs=46.2
Q ss_pred cccEEEECcEEEcCCC--ceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeec
Q 009282 52 SSKILIKGGTVVNAHH--QQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMP 105 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~--~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~P 105 (538)
|.|++|+|++|+|+.+ ...++|+|+||||++|++... +++.++||++|++|+|
T Consensus 1 P~DllIkn~~i~d~~~~~~~~~di~I~~g~I~~Ig~~~~-~~~~~vIDa~G~~v~P 55 (55)
T d1m7ja1 1 PFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSA-SSARRRIDVAGKVVSP 55 (55)
T ss_dssp CBSEEEESSEECCSSSCCCEECEEEEETTEEEEEECCTT-SCBSCEEECTTCEEEE
T ss_pred CCcEEEECCEEECCCCCceeEEEEEEECCEEEEEccCCC-CCCCEEEECCCCEECC
Confidence 4689999999999875 368899999999999998654 4468999999999998
|
| >d2paja1 b.92.1.4 (A:10-69,A:406-484) Hypothetical protein GOS_1943094 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein GOS 1943094 species: Environmental samples
Probab=99.21 E-value=9.1e-13 Score=108.32 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=69.9
Q ss_pred CHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE
Q 009282 411 SVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 411 s~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
+.++++.++|.++|+.+|+++.+|+|++||.|||+++|.+.+...+. .++.....|.+. ...|++||++|++|++
T Consensus 36 ~~~~i~~~at~~Ga~~l~~~~~ig~l~~G~~ADli~~d~~~p~~~p~---~dp~~~lV~~~~--~~~V~~v~V~G~~vv~ 110 (139)
T d2paja1 36 TIDAIGALAPRPGETIVDATDCVIYVAVGYAADIAVYRLDDPRYFGL---HDPAIGPVASGG--RPSVMALFSAGKRVVV 110 (139)
T ss_dssp EEEEESSCCCCTTCEEEECBTCEEECSTTSBCCEEEEECCSGGGTTC---SSGGGHHHHSCS--CCEEEEEEETTEEEEE
T ss_pred cHHHHHhhhhhccchhcCCCCccceeccCCcccEEEEcCCCcccCCC---CCHHHHHHHhhC--cCcceeEEEcCEEEEE
Confidence 44556668999999999998889999999999999999998877653 344445667665 5689999999999999
Q ss_pred CCeeeccC
Q 009282 491 NDELNVVP 498 (538)
Q Consensus 491 ~~~~~~~~ 498 (538)
+|++++.|
T Consensus 111 dg~l~~iD 118 (139)
T d2paja1 111 DDLIEGVD 118 (139)
T ss_dssp TTBCTTCC
T ss_pred CCEeccCC
Confidence 99999987
|
| >d1gkra1 b.92.1.3 (A:1-54,A:380-451) L-hydantoinase {Arthrobacter aurescens [TaxId: 43663]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: L-hydantoinase species: Arthrobacter aurescens [TaxId: 43663]
Probab=99.21 E-value=1.5e-11 Score=99.38 Aligned_cols=73 Identities=29% Similarity=0.445 Sum_probs=69.6
Q ss_pred cccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeec
Q 009282 434 GAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 506 (538)
Q Consensus 434 GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~ 506 (538)
..|++|..|||+++|++..+.++++.+.+...|+||+|+.+.++|..||++|++||++++++...+.|++++|
T Consensus 54 P~~~vG~DAD~~l~Dp~~~~~v~~~~~~sk~~~tpf~G~~~~G~v~~Ti~rG~~v~~~ge~~~~~g~G~~i~r 126 (126)
T d1gkra1 54 PTLQVGSDADLLILDLDIDTKVDASQFRSLHKYSPFDGMPVTGAPVLTMVRGTVVAEKGEVLVEQGFGQFVTR 126 (126)
T ss_dssp ESCCTTSBCCEEEEESCCCEECCGGGCSSSCCCCTTTTCEECCEEEEEEETTEEEEETTEECSCTTCCCBCCC
T ss_pred cceeecccchhheeccccceeccHHHHHhhhcccccCCcEEEeEEEEEEECCEEEEECCEEEecCCCCeEccC
Confidence 4599999999999999999999999999999999999999999999999999999999999999889999875
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=99.20 E-value=1.1e-13 Score=103.68 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=53.8
Q ss_pred HHHHHHHhHhHHHHcCCCCC--CcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEE
Q 009282 413 TDYVRLTSTECARIFNVYPR--KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWE 490 (538)
Q Consensus 413 ~eal~~aT~~~A~~lg~~~~--~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~ 490 (538)
.++|+++|+|||++++++++ +|+|++||.|||+++++||+.++.. ..++..||++|+++.+
T Consensus 31 i~ai~~~t~~~A~il~l~d~illG~I~~Gk~ADlvlvdgnPL~dI~~-----------------l~~i~~Vik~G~v~k~ 93 (95)
T d3be7a1 31 IAEIGKINTKDATVISIPDLILIPQIKEGFDADIVGVIENPLANIRT-----------------LEEVAFVMKEGKVYKR 93 (95)
T ss_dssp EEEEECCCCSSSEEEEEEEEEEEESCCTTSBCCEEEESSCTTTCGGG-----------------TTSCCEEEETTEEEEE
T ss_pred HHHHHhhccChHHhcCCCCccccceeccCceeeEEEEcCCchhhhHH-----------------hcCCCEEEECCEEEcC
Confidence 35788999999999999877 5999999999999999998866643 3578999999997776
Q ss_pred CC
Q 009282 491 ND 492 (538)
Q Consensus 491 ~~ 492 (538)
+|
T Consensus 94 e~ 95 (95)
T d3be7a1 94 EG 95 (95)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related protein-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidinase related protein-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=2.4e-11 Score=99.74 Aligned_cols=64 Identities=31% Similarity=0.561 Sum_probs=58.9
Q ss_pred cEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccc-cccccccccc
Q 009282 54 KILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG-IDPHTHLAME 117 (538)
Q Consensus 54 ~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGl-ID~H~H~~~~ 117 (538)
+++|+|++|++.+....+||+|+||+|.+|+.+...+.++++||+.|++++||. .|+|.|+..+
T Consensus 2 k~lIkng~iv~~~~~~~~DilIedG~I~~Ig~~l~~~~~a~vIDa~G~~v~~~~G~dAdl~i~Dp 66 (142)
T d1kcxa1 2 RLLIRGGRIINDDQSFYADVYLEDGLIKQIGENLIVPGGVKTIEANGRMVIIAVGSDADVVIWDP 66 (142)
T ss_dssp CEEEESCEEECSSCEEECEEEEETTEEEEEESSCCSCSSCEEEECTTCEEECCTTSBCCEEEEEE
T ss_pred cEEEECCEEECCCCcEEeeEEEECCEEeEEeccCCCCccceeechhhcceeecccccceEEEEec
Confidence 489999999998877889999999999999988877777999999999999998 9999999876
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=99.15 E-value=9.1e-12 Score=98.45 Aligned_cols=73 Identities=29% Similarity=0.425 Sum_probs=65.8
Q ss_pred HhHhHHHHcCCCC--CCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 419 TSTECARIFNVYP--RKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 419 aT~~~A~~lg~~~--~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
.+.++|+.+.... ..|.|++|+.|||+|+|++..|.+..+.+.+...|+||+|+.+.++|.+||++|++||+|
T Consensus 38 i~~~~a~viD~~g~~~~~~l~~G~~ADl~i~Dp~~~~~v~~~~~~Sk~~nspf~g~~l~G~v~~T~~~G~~v~~d 112 (112)
T d1xrta1 38 ILVPEAEIIDAKGLIVCPTLKLGSPADITIFDPNKEWILNEETNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 112 (112)
T ss_dssp CCCSSEEEEECTTSEEEECCCTTSBCCEEEEEEEEEEECSTTTCCSSCCCCTTTTCEEEEEEEEEEETTEEEEEC
T ss_pred CCcccceEEehhcccccceeecccceEEEEecCCccEEECHHHccCcCCCceecCCEEeeEEEEEEECCEEEEeC
Confidence 3567888875532 358999999999999999999999999999999999999999999999999999999986
|
| >d1p1ma1 b.92.1.4 (A:1-49,A:331-404) Hypothetical protein TM0936 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Hypothetical protein TM0936 species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=2.6e-13 Score=108.12 Aligned_cols=82 Identities=12% Similarity=0.092 Sum_probs=68.8
Q ss_pred CCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 410 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 410 ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
.+.+.++.++|..+|..+|. ...|+|++||.|||+++|.+.+...+..++ .....|.+ .++|.+||++|++|+
T Consensus 26 ~t~~~~~~~~t~~~a~~~G~-~~~GrIe~G~~ADivviDl~~p~~~p~~dp---~~~lV~~~---~~~V~~V~V~Gk~Vv 98 (123)
T d1p1ma1 26 GTIKRVLQGEVKVDLDLSGK-LVMPKIEEGWNADLVVIDLDLPEMFPVQNI---KNHLVHAF---SGEVFATMVAGKWIY 98 (123)
T ss_dssp TEEEEEEESSCCCSEECTTE-EEEESCCTTSBCCEEEEECCSGGGCSGGGH---HHHHHHTC---CSCCSEEEETTEEEE
T ss_pred ccHHHHHhhhhccChhhcCC-ccccccCCCCCcCEEEEeCCCCcccchhhh---HHHHHhcc---CCCccEEEECCEEEE
Confidence 57889999999999999999 789999999999999999999877664332 22334543 357999999999999
Q ss_pred ECCeeeccC
Q 009282 490 ENDELNVVP 498 (538)
Q Consensus 490 ~~~~~~~~~ 498 (538)
++|++++.|
T Consensus 99 ~dG~~~~iD 107 (123)
T d1p1ma1 99 FDGEYPTID 107 (123)
T ss_dssp ETTBCTTSC
T ss_pred ECCeEcccC
Confidence 999999987
|
| >d2ftwa1 b.92.1.3 (A:7-59,A:394-490) Dihydropyrimidine amidohydrolase Pyd2 {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.04 E-value=1.8e-10 Score=95.23 Aligned_cols=65 Identities=38% Similarity=0.526 Sum_probs=57.9
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecc-ccccccccccc
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG-GIDPHTHLAME 117 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PG-lID~H~H~~~~ 117 (538)
.+++|+|++|++.+....+||+|+||+|.+|+.+...+.++++||+.|++++++ ..|+|.|+..+
T Consensus 2 ~~iLIkng~iv~~~~~~~~DIlI~~G~I~~I~~~i~~~~~~~iida~gk~v~i~~G~dad~~i~dp 67 (150)
T d2ftwa1 2 GTILIKNGTVVNDDRYFKSDVLVENGIIKEISKNIEPKEGIKVVDATDKLLLIDVGCDGDIVIWDP 67 (150)
T ss_dssp CCEEEESCEEECSSCEEECEEEEETTEEEEEESCCCCCSSCCEEECTTCEEECSTTSBCCEEEEEE
T ss_pred CCEEEECCEEECCCCcEEeeEEEECCEEEEEeccCCCCCccEEEecccceeeeecCccCceEEEec
Confidence 358999999999887789999999999999999887767799999999988665 59999999876
|
| >d1gkpa1 b.92.1.3 (A:2-54,A:390-459) D-hydantoinase {Thermus sp. [TaxId: 275]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Thermus sp. [TaxId: 275]
Probab=99.03 E-value=2.5e-10 Score=91.40 Aligned_cols=74 Identities=24% Similarity=0.477 Sum_probs=69.1
Q ss_pred ccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCc
Q 009282 435 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510 (538)
Q Consensus 435 sI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~ 510 (538)
.+-|| ||+|+||++..+.++.+++++...|+||+|+.+.+.|..|+++|+.||++|+++...+.|++++++|+.
T Consensus 49 ~v~~g--~d~~~~d~~~~~tis~~~~~s~~~~tpfeG~~~~G~v~~ti~rG~~v~~~g~~~~~~g~G~~l~R~P~~ 122 (123)
T d1gkpa1 49 YVFPG--ADLVVYDPQYRGTISVKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQFVGEKGWGKLLRREPMY 122 (123)
T ss_dssp EEEEC--CCEEEEETTCCEECCGGGCCSSSSCCTTTTCEESCEEEEEEETTEEEEETTEECCCTTCCCBCCCCCCC
T ss_pred eEecC--cceEEEecccccccchhhhhcccccccccccEEeeEEEEEEECCEEEEECCEEEecCCCCeEeCCCCCC
Confidence 46677 699999999999999999999999999999999999999999999999999999999999999998763
|
| >d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Burkholderia pickettii [TaxId: 329]
Probab=99.03 E-value=2.2e-10 Score=92.38 Aligned_cols=76 Identities=32% Similarity=0.624 Sum_probs=71.2
Q ss_pred cccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCcc
Q 009282 436 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNY 511 (538)
Q Consensus 436 I~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~~ 511 (538)
+.+|..|||+++|++..+.++++.+.+...++||+|+.+.+.|.+||++|+.||++|+++...+.|++|+++++++
T Consensus 52 g~i~~~~~~~i~dP~~~~tIt~~~~~s~~~~tpyeG~~~~G~~~~Ti~rG~~V~~~g~~~~~~g~G~~l~R~~~~~ 127 (127)
T d1nfga1 52 IAVGSDADIVLWDPEAEMVIEQTAMHNAMDYSSYEGHKVKGVPKTVLLRGKVIVDEGSYVGEPTDGKFLKRRKYKQ 127 (127)
T ss_dssp CSTTSBCCEEEEEEEEEEECCGGGSCSSCSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTSCCBCCCCSCCC
T ss_pred ecccccccceeeccccceEEehHHhccccCcCCCcCCEEeeEEEEEEECCEEEEECCEEeecCCCCeEccCCCCCC
Confidence 4667789999999999999999999999999999999999999999999999999999999998999999998763
|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Phosphotriesterase-like domain: Phosphotriesterase homology protein species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=9.5e-09 Score=96.80 Aligned_cols=260 Identities=14% Similarity=0.106 Sum_probs=139.5
Q ss_pred cccccccccccccC--------CCCChhhHHHHHHHHHhCCcEEEecccCCCCC-CHHHHHHHHHHHhcccceeeeeeee
Q 009282 106 GGIDPHTHLAMEFM--------GSETIDDFFSGQAAALAGGTTMHIDFVIPING-SLTAGFEAYEKKAKNSCMDYGFHMA 176 (538)
Q Consensus 106 GlID~H~H~~~~~~--------~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (538)
|++|+|.|+...+. -....+.....+..+.+.||++++++...... +.....+...+.+.+.+...|++..
T Consensus 6 G~~dtH~Hl~~d~~~~~~d~~~~~d~~~~~~~~l~~~~~~Gv~~iV~~t~~~~g~d~~~~~~la~~~~~~i~~~~G~hp~ 85 (291)
T d1bf6a_ 6 GYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVVACTGYYQD 85 (291)
T ss_dssp SEEEEEECSSEECHHHHTCGGGEECCHHHHHHHHHHHHHTTEEEEEECCCGGGTCCHHHHHHHHHHHCCEEEEEECCCCG
T ss_pred cceeeccCccCChhHhccChHhhhhhHHHHHHHHHHHHHcCCCEEEEcCCCccccCHHHHHHHHHHcCCCeeeeeeecCc
Confidence 89999999953210 01123334455677788999999986433222 3333333333333344555555532
Q ss_pred eec------CChh-hHHHHHHHHHHcC-----C--cEEEEE-eeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhhH
Q 009282 177 ITK------WDEV-VSDEMEVMVKEKG-----I--NSFKFF-MAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDAV 241 (538)
Q Consensus 177 ~~~------~~~~-~~~~~~~~~~~~g-----~--~~ik~~-~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~ 241 (538)
... .+.+ ..+.+.... ..+ . ..++.. .++........+.+++.++.|+++|+++.+|+......
T Consensus 86 ~~~p~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~IGe~g~d~~~~~~~q~~~f~~~~~~A~~~~lPv~iH~r~~~~~ 164 (291)
T d1bf6a_ 86 AFFPEHVATRSVQELAQEMVDEI-EQGIDGTELKAGIIAEIGTSEGKITPLEEKVFIAAALAHNQTGRPISTHTSFSTMG 164 (291)
T ss_dssp GGCCTHHHHSCHHHHHHHHHHHH-HTCSTTSSCCEEEEEEEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGCSH
T ss_pred ccCCcccCcCCHHHHHHHHHHHH-HHHHhccCceEEEEEeeccccCCCCHHHHHHHHHHHHHHHHhCCCeEEeccchhhh
Confidence 211 1111 122222222 112 1 123322 22211112234568888999999999999998654333
Q ss_pred HHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEecccccccc
Q 009282 242 FEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVL 321 (538)
Q Consensus 242 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~ 321 (538)
.+.+..+.+.|... ...++.|+......+.++++.+.|..+..+-...
T Consensus 165 ~e~~~~l~~~~~~~----------------------------~~~~~~H~~f~~~~e~~~~~~~~G~~i~~~g~~~---- 212 (291)
T d1bf6a_ 165 LEQLALLQAHGVDL----------------------------SRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGK---- 212 (291)
T ss_dssp HHHHHHHHHTTCCG----------------------------GGEEECCCCSSCCHHHHHHHHHTTCEEEECCTTC----
T ss_pred HHHHHHHHHhCCCc----------------------------ccceecccCCCCCHHHHHHHHhcCeeEEeccccc----
Confidence 34455555544432 2346778833233488888999998877653320
Q ss_pred CcccccCCCcccccceeecCCCCCcccHHHHHHHHhcC--CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHH
Q 009282 322 DDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATG--ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHL 399 (538)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~G--v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~ 399 (538)
....| .......++++.+.+ -++.++||.+..++.. . .|-.+....+..
T Consensus 213 ---------------~~~~~---~~~~~~~~~~lv~~~p~drilleTD~p~~~p~~-------~----~g~~~~~~~~~~ 263 (291)
T d1bf6a_ 213 ---------------NSYYP---DEKRIAMLHALRDRGLLNRVMLSMDITRRSHLK-------A----NGGYGYDYLLTT 263 (291)
T ss_dssp ---------------TTTSC---HHHHHHHHHHHHHTTCGGGEEECCCCCSGGGSG-------G----GTSCCTTHHHHT
T ss_pred ---------------ccCCc---HHHhHHHHHHHHHhCCchhEEEecCCCCccccc-------c----CCCCCchhHHHH
Confidence 00000 011224467777775 4689999965433221 1 111222223333
Q ss_pred HHHHhhhcCCCCHHHHHHHHhHhHHHHcC
Q 009282 400 VWDTMVESGQISVTDYVRLTSTECARIFN 428 (538)
Q Consensus 400 ~~~~~~~~~~ls~~eal~~aT~~~A~~lg 428 (538)
.+..+.. -|+|.+++-++.+.||+++|.
T Consensus 264 ~~~~l~~-~g~s~e~i~~i~~~Np~rlf~ 291 (291)
T d1bf6a_ 264 FIPQLRQ-SGFSQADVDVMLRENPSQFFQ 291 (291)
T ss_dssp HHHHHHH-TTCCHHHHHHHHTHHHHHHCC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 3433434 469999999999999999873
|
| >d1ejxc2 c.1.9.2 (C:1130-1422,C:1476-1567) alpha-subunit of urease, catalytic domain {Klebsiella aerogenes [TaxId: 28451]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: alpha-subunit of urease, catalytic domain domain: alpha-subunit of urease, catalytic domain species: Klebsiella aerogenes [TaxId: 28451]
Probab=98.98 E-value=3.6e-09 Score=96.54 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=87.1
Q ss_pred cccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCC--------CHHHHHHHHHHHhcccceeeeeeeeeec
Q 009282 108 IDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPING--------SLTAGFEAYEKKAKNSCMDYGFHMAITK 179 (538)
Q Consensus 108 ID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (538)
||+|+|+..+ +....+|++||||++..+..+.. .....+....+.....++++++......
T Consensus 2 iDtHvHfi~P-----------qq~~~al~sGiTT~iGgGtGPa~Gt~att~tpg~~~~~~ml~a~d~~P~N~g~~gkGn~ 70 (385)
T d1ejxc2 2 IDTHIHWICP-----------QQAEEALVSGVTTMVGGGTGPAAGTHATTCTPGPWYISRMLQAADSLPVNIGLLGKGNV 70 (385)
T ss_dssp EEEEEECSCT-----------THHHHHHHTTEEEEEEECCSSSHHHHHSSCCCHHHHHHHHHHHHTTSSSEEEEEEECCC
T ss_pred ccccccccCH-----------HHHHHHHhcCCeeeecCccCCCCCCCCcCcCCCHHHHHHHHHhhhhCCcceeeeecccc
Confidence 8999999876 12567899999999966543321 3456677788888889999999876554
Q ss_pred CChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCChhh
Q 009282 180 WDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENGDA 240 (538)
Q Consensus 180 ~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~ 240 (538)
... ..+.+.. +.|+.++|+--+ +..++..+...+..|.++++++.+|..+.++
T Consensus 71 s~~---~~l~eqi-~AGa~GlKiHED----wGatpa~id~~L~vad~~dvqv~iHtDtlNE 123 (385)
T d1ejxc2 71 SQP---DALREQV-AAGVIGLKIHED----WGATPAAIDCALTVADEMDIQVALHSDTLNE 123 (385)
T ss_dssp SSH---HHHHHHH-HHTCSEEEEEGG----GCCCHHHHHHHHHHHHHHTCEEEEECCTTCS
T ss_pred CCh---HHHHHHH-HhhhceecCCcc----cccChHHHHHHHHhHhhcCceEEEecccccc
Confidence 443 3455556 679999999654 4568999999999999999999999966543
|
| >d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.97 E-value=5.3e-10 Score=90.47 Aligned_cols=75 Identities=36% Similarity=0.664 Sum_probs=70.1
Q ss_pred cccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCc
Q 009282 436 ILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFN 510 (538)
Q Consensus 436 I~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~ 510 (538)
+.+|..||++++|++..+.++++.+.+...|+||+|..+.+.|.+|+++|++||++++++...+.|++++|.++.
T Consensus 53 ~~v~~~~~~~~~dp~~~~~i~~~~~~s~~~~tpf~G~~~~g~v~~Ti~rG~~V~~dg~~~~~~G~G~fv~R~~~g 127 (128)
T d1k1da1 53 IVVGSDADLVIFDPNIERVISAETHHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRDKQFVGKPGYGQYLKRAKYG 127 (128)
T ss_dssp CSTTSBCCEEEEEEEEEEECCTTTCCSSSSCCTTTTCEEEEEEEEEEETTEEEEETTEECCCTTCSCBCCCCCSC
T ss_pred eecccccceEEeeccccEEEeccccccccceeeecCcEEEEEEEEEEECCEEEEECCEEEecCCCCeEecCCCCC
Confidence 456888999999999999999999999999999999999999999999999999999999999999999988753
|
| >d1ynya1 b.92.1.3 (A:2-52,A:385-460) D-hydantoinase {Bacillus sp. AR9 [TaxId: 301298]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: D-hydantoinase species: Bacillus sp. AR9 [TaxId: 301298]
Probab=98.95 E-value=7.4e-10 Score=89.56 Aligned_cols=77 Identities=36% Similarity=0.624 Sum_probs=72.3
Q ss_pred ccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecCCCcc
Q 009282 435 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMRPFNY 511 (538)
Q Consensus 435 sI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~~~~~ 511 (538)
-+.+|..|||+++|++..+.++.+++.+...|+||+|+.+.+.|..|+++|+.||++|+++...+.|++++++++++
T Consensus 51 Pg~i~~~~~~~i~dp~~~~tI~~~~~~s~~~~tpfeG~~~~G~v~~Ti~rG~~v~~~g~~~~~~g~G~fi~R~~f~~ 127 (127)
T d1ynya1 51 PIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIKRTTFEQ 127 (127)
T ss_dssp ECSTTSBCCEEEEEEEEEEEECTTTCCSSSSCCTTTTEEEEEEEEEEEETTEEEEETTEECCCTTCCCBCCCCCCCC
T ss_pred cccccccchhhhhccccceEEeehhhhhccCcCCcCCCEEeeEEEEEEECCEEEEECCEEeecCCCceEecCCCCCC
Confidence 46679999999999999999999999999999999999999999999999999999999999988999999998864
|
| >d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: D-aminoacylase domain: N-acyl-D-aminoacid amidohydrolase species: Alcaligenes faecalis [TaxId: 511]
Probab=98.93 E-value=6.2e-10 Score=76.81 Aligned_cols=61 Identities=18% Similarity=0.415 Sum_probs=44.8
Q ss_pred ccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeec
Q 009282 435 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEM 506 (538)
Q Consensus 435 sI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~ 506 (538)
.|++|+.|||||||++...+ .... ...+.+ ...|.+||+||++++++|+++... +|++||+
T Consensus 1 ri~~G~~ADlvvfDp~~i~d--~~~~--~~~~~~------~~Gi~~v~VnG~~v~~~g~~~~~~-~G~~lrR 61 (61)
T d1m7ja2 1 QVQPGYYADLVVFDPATVAD--SATF--EHPTER------AAGIHSVYVNGAAVWEDQSFTGQH-AGRVLNR 61 (61)
T ss_dssp SCCTTSBCCEEEECTTTCBC--CCCS--SSTTCC------CBSEEEEEETTEEEEETTEECSCC-CCCBCCC
T ss_pred CCCCCcCCCEEEECHHHccC--cccc--cccccc------cceeEEEEECCEEEEECCEECCCC-CCEEeeC
Confidence 48999999999999875422 1111 111112 346899999999999999999866 8999874
|
| >d1o12a2 c.1.9.10 (A:44-331) N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain domain: N-acetylglucosamine-6-phosphate deacetylase, NagA, catalytic domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=1.7e-09 Score=101.24 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=33.4
Q ss_pred cccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCC
Q 009282 106 GGIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPI 149 (538)
Q Consensus 106 GlID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~ 149 (538)
||||+|+|+..+ +....+++...++.++++||||++++....
T Consensus 1 GlID~HvH~~~~--~~~~~~~~~~~~~~~l~~GvTTv~~~~~t~ 42 (288)
T d1o12a2 1 GFVDPHIHGVVG--ADTMNCDFSEMEEFLYSQGVTTFLATTVST 42 (288)
T ss_dssp CEEEEEECEETT--EETTTTCHHHHHHHHHTTTEEEEEEECCSC
T ss_pred CeEEecccCCCC--CccccccHHHHHHHHHhCCeEEEcCCCCCC
Confidence 899999998776 444556677778999999999999875443
|
| >d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease {Bacillus pasteurii [TaxId: 1474]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Bacillus pasteurii [TaxId: 1474]
Probab=98.81 E-value=4.2e-09 Score=86.05 Aligned_cols=84 Identities=23% Similarity=0.307 Sum_probs=68.1
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCC------------CCCCceEEecCCCeeeccccccccccccccC
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN------------VGDDVKVLDATGKFVMPGGIDPHTHLAMEFM 119 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~------------~~~~~~vID~~G~~v~PGlID~H~H~~~~~~ 119 (538)
..+++|+|+-|++..++..+||-|+||||+.||.... +..++++|.++|++++||-||.|.|+...
T Consensus 66 ~~d~vitn~~i~d~~Gi~KadiGikdG~I~giGkaGNPd~mdgV~~~~vig~~Teviageg~I~TagvIdthvHFp~q-- 143 (180)
T d4ubpc1 66 VLDLLLTNALILDYTGIYKADIGVKDGYIVGIGKGGNPDIMDGVTPNMIVGTATEVIAAEGKIVTALVLWEPKFFGVK-- 143 (180)
T ss_dssp BCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTCTTCCTTCBCCTTCEEEECTTCEEEEEEEECGGGTTTS--
T ss_pred cceEEEeeEEEecCCCeEEeeeeeecCEEEEeeccCCccccCCCCCCeEEcCCceEEecCCceEEEEEEeehhhcCCC--
Confidence 4689999999999888899999999999999986321 13468999999999999999999997443
Q ss_pred CCCChhhHHHHHHHHHhCCcEEEecccCC
Q 009282 120 GSETIDDFFSGQAAALAGGTTMHIDFVIP 148 (538)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~GvTt~~d~~~~ 148 (538)
++ .++++|+|+.-.+..+
T Consensus 144 ----pe-------~aLksG~tt~Gp~gg~ 161 (180)
T d4ubpc1 144 ----AD-------RVIKGGIIAYAQIGDP 161 (180)
T ss_dssp ----CS-------EEEETTEEEEEEECCT
T ss_pred ----HH-------HHHhcCceeEccCCCC
Confidence 22 2488999998766543
|
| >d1xwya1 c.1.9.12 (A:1-260) Deoxyribonuclease TatD (MttC) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Deoxyribonuclease TatD (MttC) species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=7.3e-07 Score=81.61 Aligned_cols=251 Identities=11% Similarity=0.076 Sum_probs=141.6
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeec-CChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 185 (538)
+||+|+|+.... -.+++......+...||+.++..+... ..........+..+..+..+|+|..... ......
T Consensus 1 liD~H~HL~~~~----f~~d~~~vl~~a~~~gV~~ii~~~~~~--~~~~~~~~la~~~~~v~~a~GiHP~~~~~~~~~~~ 74 (260)
T d1xwya1 1 MFDIGVNLTSSQ----FAKDRDDVVACAFDAGVNGLLITGTNL--RESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATE 74 (260)
T ss_dssp CEEEEECTTSGG----GTTTHHHHHHHHHHTTCCEEEECCCSH--HHHHHHHHHHHHSTTEEEEECCCGGGGGGCCHHHH
T ss_pred CEEEEeCCCChH----HhCCHHHHHHHHHHCCCCEEEEecCCH--HHHHHHHHHHHhCCcccchhhcCcchhhhhhhhHH
Confidence 699999997641 123566668889999999998654321 2233333344444555566676654332 233334
Q ss_pred HHHHHHHHHcCCcEEE-EEeeeCCCccC---CHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVKEKGINSFK-FFMAYKGSFMI---NDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~~~g~~~ik-~~~~~~~~~~~---~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
..+..+........++ +.+++.-.... ..+.+.+.++.|.++++|+.+|+..... +.++.+....
T Consensus 75 ~~~~~~~~~~~~vaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPviiH~r~a~~--~~~~il~~~~--------- 143 (260)
T d1xwya1 75 EAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHE--RFMTLLEPWL--------- 143 (260)
T ss_dssp HHHHHHHTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHH--HHHHHHGGGG---------
T ss_pred HHHHHHHhcchhhhhhhhcccccccccchHHHHHHHHHHHHHHHhcCCceEeeeccchh--HHHHHHHHhh---------
Confidence 4444544333444444 33443211111 2355677889999999999999965421 2222221111
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
....+ .+.|+.+.+. +.++.+.+.|..++........ .
T Consensus 144 -------------------~~~~~-~v~H~f~g~~-~~~~~~~~~g~~~s~~g~~~~~-------------~-------- 181 (260)
T d1xwya1 144 -------------------DKLPG-AVLHCFTGTR-EEMQACVAHGIYIGITGWVCDE-------------R-------- 181 (260)
T ss_dssp -------------------GGSSC-EEECSCCCCH-HHHHHHHHTTCEEEECGGGGCT-------------T--------
T ss_pred -------------------ccCcc-cchhhhhccH-HHHHHhhhhccccccCccccch-------------h--------
Confidence 11112 4688888776 8888899999887765432100 0
Q ss_pred CCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHH
Q 009282 342 PIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~a 419 (538)
....++++++. . -++.+-||.+...+. ++...+.|--.-=..+...++.+.+..|++.+++.+..
T Consensus 182 ------~~~~~~~~~~~iPldrlllETD~P~~~p~-------~~~~~~~~~~NeP~~l~~v~~~lA~~~g~~~~ev~~~~ 248 (260)
T d1xwya1 182 ------RGLELRELLPLIPAEKLLIETDAPYLLPR-------DLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATT 248 (260)
T ss_dssp ------TSHHHHHHGGGSCGGGEEECCCTTSCCCT-------TCTTCCCSSCCCGGGHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred ------hHHHHHHHHHhhhhhheeeecCCCCCCCc-------cccccccCCCCChHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 00123444433 2 268999997644332 22111111100012344444444455569999999999
Q ss_pred hHhHHHHcCC
Q 009282 420 STECARIFNV 429 (538)
Q Consensus 420 T~~~A~~lg~ 429 (538)
+.|.-+++|+
T Consensus 249 ~~N~~~~f~l 258 (260)
T d1xwya1 249 DANVKTLFGI 258 (260)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 9999999998
|
| >d2i9ua1 b.92.1.4 (A:9-66,A:377-427) Guanine deaminase {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.67 E-value=3.5e-10 Score=88.38 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=52.6
Q ss_pred HHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 418 LTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 418 ~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
.+|.++|+++++++++|++++||.||++++|.+.+...+. .+.++.....|.+. .+.|+.|||+|++||
T Consensus 41 pat~~ga~~~~~~~~ig~~e~Gk~AD~vviD~~~~~~~~~-~~~d~L~~li~~gd--~r~V~~V~V~G~~VY 109 (109)
T d2i9ua1 41 PDKYKGNPIIDFRNNIIIFEEGYDFDALVINDSNLYPEDY-DLTERLERFIYLGD--DRNIMKRYVCGNEIF 109 (109)
T ss_dssp CGGGTTSCEEEEEEEEEECSTTCBCCEEEECCTTSCGGGS-CHHHHHHHHHHHCC--GGGEEEEEETTEEEC
T ss_pred HHHhCCceeeccccceeeecCCCEeeEEEEcCCCcchhhh-hhhhHHHHheeeCC--CCceeEEEECCEECC
Confidence 3699999999999999999999999999999776544331 12222223345554 468999999999997
|
| >d1yixa1 c.1.9.12 (A:1-265) Putative deoxyribonuclease YcfH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YcfH species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=9.2e-07 Score=81.32 Aligned_cols=252 Identities=19% Similarity=0.172 Sum_probs=137.9
Q ss_pred ccccccccccccCCCC-ChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHH--HHHhcccceeeeeeeeeecCChh
Q 009282 107 GIDPHTHLAMEFMGSE-TIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAY--EKKAKNSCMDYGFHMAITKWDEV 183 (538)
Q Consensus 107 lID~H~H~~~~~~~~~-~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 183 (538)
|||+|+|+... ... ..+++......+...||+.++..+.. ...+.+.. .+..+.....+|+|...... ..
T Consensus 3 lIDtH~Hld~~--~~e~~~~d~~~vi~~a~~~gv~~ii~~~~~----~~~~~~~~~l~~~~~~i~~~~GiHP~~~~~-~~ 75 (265)
T d1yixa1 3 LVDSHCHLDGL--DYESLHKDVDDVLAKAAARDVKFCLAVATT----LPSYLHMRDLVGERDNVVFSCGVHPLNQND-PY 75 (265)
T ss_dssp EEEEEECGGGS--CTTTTCSSHHHHHHHHHHTTEEEEEECCSS----HHHHHHHHHHHCSCTTEEEEECCCTTCCSS-CC
T ss_pred EEEecccCCcc--ccchhhcCHHHHHHHHHHcCCCEEEEeeCC----HHHHHHHHHHHHhccccccccccccccccc-cc
Confidence 79999999753 111 22355666788899999988754322 22222222 21222334445555422222 22
Q ss_pred hHHHHHHHHHHcCCcEEE-EEeeeCCCcc---CCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009282 184 VSDEMEVMVKEKGINSFK-FFMAYKGSFM---INDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 184 ~~~~~~~~~~~~g~~~ik-~~~~~~~~~~---~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (538)
..+.+..+.....+.+++ +.+++.-... ...+.+.+.++.|.++++++.+|+..... +.++.+...
T Consensus 76 ~~e~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~q~~~f~~ql~lA~~~~lPv~iH~r~a~~--~~~~il~~~-------- 145 (265)
T d1yixa1 76 DVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARA--DTLAILREE-------- 145 (265)
T ss_dssp CHHHHHHHHTSTTEEEEEEEEEECTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCHH--HHHHHHHHT--------
T ss_pred chHHHHHHhccCCceeeecccccccccccchHHHHHHHHHHHHHHHHhCCCcccchhhHHH--HHHHHHHhh--------
Confidence 355666666444444444 3344432111 12345777889999999999999965421 222211111
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
.....+ .+.|+.+.+. +.++++.+.|..+..+.... +..
T Consensus 146 --------------------~~~~~~-~v~H~FsG~~-~~a~~~l~~g~~~s~~g~~~-------------~~~------ 184 (265)
T d1yixa1 146 --------------------KVTDCG-GVLHCFTEDR-ETAGKLLDLGFYISFSGIVT-------------FRN------ 184 (265)
T ss_dssp --------------------TGGGTC-EEETTCCSCH-HHHHHHHTTTCEEEECGGGG-------------STT------
T ss_pred --------------------cccCcc-eEEEeecCCh-HHHHHHHHcCCeecCccccc-------------cch------
Confidence 111222 4779988776 88888888998776654320 000
Q ss_pred cCCCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHH
Q 009282 340 SPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~ 417 (538)
...++++++. . -++.+-||++...+. ++..-.+- -..+...++.+.+..+++.+++.+
T Consensus 185 ---------~~~l~~~v~~iPldrlLlETD~P~~~p~-------~~~~~~n~----P~~i~~~~~~iA~i~~~~~~ev~~ 244 (265)
T d1yixa1 185 ---------AEQLRDAARYVPLDRLLVETDSPYLAPV-------PHRGKENQ----PAMVRDVAEYMAVLKGVAVEELAQ 244 (265)
T ss_dssp ---------CHHHHHHHHHSCGGGEEECCCBTSCCCT-------TCTTSCCC----GGGHHHHHHHHHHHHTSCHHHHHH
T ss_pred ---------hHHHHHHHHhcchhceEeecCCcccCcc-------ccCCCCCC----cHHHHHHHHHHHHHHCcCHHHHHH
Confidence 0113333322 1 258899996543322 11111100 112344444444445699999999
Q ss_pred HHhHhHHHHcCCCC-CCccc
Q 009282 418 LTSTECARIFNVYP-RKGAI 436 (538)
Q Consensus 418 ~aT~~~A~~lg~~~-~~GsI 436 (538)
..+.|.-++||++. ++++|
T Consensus 245 ~~~~Na~~lf~l~~~~~~~~ 264 (265)
T d1yixa1 245 VTTDNFARLFHIDASRLQSI 264 (265)
T ss_dssp HHHHHHHHHTTCCGGGGCCC
T ss_pred HHHHHHHHHhCCCHHHhccc
Confidence 99999999999953 45554
|
| >d1xrta1 b.92.1.3 (A:1-55,A:366-422) Two-domain dihydroorotase {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Two-domain dihydroorotase species: Aquifex aeolicus [TaxId: 63363]
Probab=98.58 E-value=4.5e-08 Score=76.77 Aligned_cols=55 Identities=29% Similarity=0.492 Sum_probs=47.6
Q ss_pred cccEEEECcEEEcCCCc--eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccc
Q 009282 52 SSKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGG 107 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~--~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGl 107 (538)
|++++|+|++|+|+... ...+|+|++|+|++|++..+.+ .+++||+.|+++.|||
T Consensus 1 m~~~likng~viDp~~g~~~~~DllI~~GkI~~I~~~i~~~-~a~viD~~g~~~~~~l 57 (112)
T d1xrta1 1 MLKLIVKNGYVIDPSQNLEGEFDILVENGKIKKIDKNILVP-EAEIIDAKGLIVCPTL 57 (112)
T ss_dssp CCEEEEESCEEEEGGGTEEEECEEEEETTEEEEEESSCCCS-SEEEEECTTSEEEECC
T ss_pred CceeEEeCeEEECCCCCccceeeEEEECCEEEEeecCCCcc-cceEEehhccccccee
Confidence 46799999999998754 5789999999999999876544 5799999999999997
|
| >d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Putative deoxyribonuclease YjjV species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=1.4e-05 Score=72.98 Aligned_cols=245 Identities=17% Similarity=0.144 Sum_probs=133.2
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeeec-CChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAITK-WDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 185 (538)
|||+|+|+... ...++.......+...||+.++..+... ..........+..+.....+|+|..... ......
T Consensus 5 ~ID~H~HLd~~----~~~~d~~~~l~~a~~~gV~~~v~~~t~~--~~~~~~~~l~~~~~~i~~~~GiHP~~~~~~~~~~~ 78 (259)
T d1zzma1 5 FIDTHCHFDFP----PFSGDEEASLQRAAQAGVGKIIVPATEA--ENFARVLALAENYQPLYAALGLHPGMLEKHSDVSL 78 (259)
T ss_dssp EEESCBCTTST----TTTTCHHHHHHHHHHTTEEEEEEECCSG--GGHHHHHHHHHHCTTEEEEECCCGGGGGGCCHHHH
T ss_pred EEEeCcCCCCh----hhCcCHHHHHHHHHHcCCCEEEEecCCH--HHHHHHHHHHhcCccccccccCCchHhhccchhhH
Confidence 79999999643 2233455667888999999887653322 2333344444444444555666553322 233333
Q ss_pred HHHHHHHHHcCC--cEEE-EEeeeCC--C-ccCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccc
Q 009282 186 DEMEVMVKEKGI--NSFK-FFMAYKG--S-FMINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGH 259 (538)
Q Consensus 186 ~~~~~~~~~~g~--~~ik-~~~~~~~--~-~~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~ 259 (538)
............ .++. +.+++.. . .....+.+++.++.|.++++++.+|+..... +.++.+...+
T Consensus 79 ~~~~~~~~~~~~~~v~iGEiGld~~~~~~~~~~q~~~f~~ql~lA~~~~~Pv~IH~r~a~~--~~~~~l~~~~------- 149 (259)
T d1zzma1 79 EQLQQALERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHD--KLAMHLKRHD------- 149 (259)
T ss_dssp HHHHHHHHHCCSSEEEEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESCHH--HHHHHHHHHC-------
T ss_pred HHHHHHHhccCcccceeccccccccccchhhhHHHHHHHHHHHHHHHhccchhhhhHHHHH--HHHHhhhccc-------
Confidence 444444423222 2222 2223211 1 1112456778889999999999999965432 2222211111
Q ss_pred cccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceee
Q 009282 260 ALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVM 339 (538)
Q Consensus 260 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (538)
..+..+.|+.+.+. +.++++.+.|..++.+.... +..
T Consensus 150 -----------------------~~~~~i~H~f~g~~-~~~~~~l~~g~~~si~~~~~-------------~~~------ 186 (259)
T d1zzma1 150 -----------------------LPRTGVVHGFSGSL-QQAERFVQLGYKIGVGGTIT-------------YPR------ 186 (259)
T ss_dssp -----------------------CTTCEEETTCCSCH-HHHHHHHHTTCEEEECGGGG-------------CTT------
T ss_pred -----------------------cccceeeecccCCH-HHHHHHHHcCCCcccccccc-------------ccc------
Confidence 12235789887776 88888888997776554320 000
Q ss_pred cCCCCCcccHHHHHHHHhc-C-CceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHH
Q 009282 340 SPPIRASGHNKALQAALAT-G-ILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVR 417 (538)
Q Consensus 340 ~p~~r~~~~~~~l~~~l~~-G-v~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~ 417 (538)
... ++++++. . -++.+.||.+...+. ++...++ . -..+...++.+.+..+++.+++.+
T Consensus 187 -----~~~----~~~~v~~iPldriL~ETD~P~~~~~-------~~~~~~~-~---P~~~~~~~~~iA~i~~~~~~ev~~ 246 (259)
T d1zzma1 187 -----ASK----TRDVIAKLPLASLLLETDAPDMPLN-------GFQGQPN-R---PEQAARVFAVLCELRREPADEIAQ 246 (259)
T ss_dssp -----TCS----HHHHHHHSCGGGEEECCCBTSSCCT-------TCTTSCC-C---GGGHHHHHHHHHHHCSSCHHHHHH
T ss_pred -----hHH----HHHHHHhhccceEEEecCCCCcCCC-------cCCCCCC-c---hHHHHHHHHHHHHHhCCCHHHHHH
Confidence 000 2222221 1 268899996533222 1111110 0 123344444455556799999999
Q ss_pred HHhHhHHHHcCC
Q 009282 418 LTSTECARIFNV 429 (538)
Q Consensus 418 ~aT~~~A~~lg~ 429 (538)
..+.|.-+++|+
T Consensus 247 ~~~~N~~rlf~l 258 (259)
T d1zzma1 247 ALLNNTYTLFNV 258 (259)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCC
Confidence 999999999987
|
| >d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: alpha-Subunit of urease domain: alpha-Subunit of urease species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=1e-07 Score=77.74 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=57.1
Q ss_pred cccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCC------------CCCCceEEecCCCeeeccc----cccccccc
Q 009282 52 SSKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNIN------------VGDDVKVLDATGKFVMPGG----IDPHTHLA 115 (538)
Q Consensus 52 ~~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~------------~~~~~~vID~~G~~v~PGl----ID~H~H~~ 115 (538)
.-|++|+|+.|+|..++..+||-|+||||+.||.... +..++++|.++|++++||= ||.|.|..
T Consensus 65 ~~D~vitna~iid~~Gi~kadiGikdG~I~~iGkaGnPd~mdgv~~~~iig~~Tevi~geg~I~TaGADlVlwd~h~hgI 144 (180)
T d1e9yb1 65 ELDLIITNALIVDYTGIYKADIGIKDGKIAGIGKGGNKDMQDGVKNNLSVGPATEALAGEGLIVTAGADLVLWSPAFFGV 144 (180)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEETTEEEEEECCBCTTTSSSCCGGGBCCTTCEEEECTTCEEEECCCEEEECTTTTTT
T ss_pred ccceEEEeeEEeccCCeEEeeeeeeCCEEEEeeccCCccccCCCCCCeEECCCceEEecCCceEecCcceEEEchhhcCC
Confidence 4689999999999888899999999999999986321 1346899999999999995 99999987
Q ss_pred cc
Q 009282 116 ME 117 (538)
Q Consensus 116 ~~ 117 (538)
.+
T Consensus 145 kP 146 (180)
T d1e9yb1 145 KP 146 (180)
T ss_dssp CC
T ss_pred CH
Confidence 76
|
| >d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: TatD Mg-dependent DNase-like domain: Hypothetical protein TM0667 species: Thermotoga maritima [TaxId: 2336]
Probab=98.48 E-value=1.8e-06 Score=78.94 Aligned_cols=246 Identities=15% Similarity=0.130 Sum_probs=136.4
Q ss_pred ccccccccccccCCCCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeee-cCChhhH
Q 009282 107 GIDPHTHLAMEFMGSETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT-KWDEVVS 185 (538)
Q Consensus 107 lID~H~H~~~~~~~~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (538)
+||+|+|+... ...++.......+..+||+.++..+... ..........+..+..+..+|+|.... ....+..
T Consensus 5 lIDsH~HLd~~----~~~~d~~~vi~~a~~~gV~~ii~~~~~~--~~~~~~~~la~~~~~i~~a~GiHP~~~~~~~~~~~ 78 (260)
T d1j6oa_ 5 MVDTHAHLHFH----QFDDDRNAVISSFEENNIEFVVNVGVNL--EDSKKSLDLSKTSDRIFCSVGVHPHDAKEVPEDFI 78 (260)
T ss_dssp EEEEEECTTSG----GGTTTHHHHHHTTTTTTEEEEEEECSSH--HHHHHHHHHHTTCTTEEEEECCCGGGGGGCCTTHH
T ss_pred cEEeccCCCCh----hhCcCHHHHHHHHHHCCCCEEEEecCCH--HHHHHHHHHHHhccccccccccChhhcccccchhh
Confidence 79999999654 1123455557778889999888553221 111222222222234455666665432 2334456
Q ss_pred HHHHHHHHHcCCcEEE-EEeeeCCCc---cCCHHHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccc
Q 009282 186 DEMEVMVKEKGINSFK-FFMAYKGSF---MINDELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHAL 261 (538)
Q Consensus 186 ~~~~~~~~~~g~~~ik-~~~~~~~~~---~~~~~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~ 261 (538)
..++.+.......+++ +.+++.-.. ....+.+++.++.|.++++++.+|+.... .+.++.+...+...
T Consensus 79 ~~l~~~~~~~~vvaIGEiGLD~~~~~~~~~~Q~~vF~~ql~lA~~~~lPviiH~r~a~--~~~~~il~~~~~~~------ 150 (260)
T d1j6oa_ 79 EHLEKFAKDEKVVAIGETGLDFFRNISPAEVQKRVFVEQIELAGKLNLPLVVHIRDAY--SEAYEILRTESLPE------ 150 (260)
T ss_dssp HHHHHHTTSTTEEEEEEEEEETTTCSSCHHHHHHHHHHHHHHHHHHTCCEEEEEESCH--HHHHHHHHHSCCCS------
T ss_pred hhhHHHHhhCCeeeEeeccccccccccHHHHHHHHHHHHHHHHHhcCcceEEeeccch--HHHHHHHHhhcCCC------
Confidence 6666665333444444 344543211 11245678889999999999999996542 23333333333221
Q ss_pred cCCchHHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecC
Q 009282 262 SRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSMDAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSP 341 (538)
Q Consensus 262 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 341 (538)
.+ .+.|+.+.+. +.++.+.+.|..+..+.... +.
T Consensus 151 ----------------------~~-~i~H~fsG~~-~~~~~~l~~g~~is~~g~~~-------------~~--------- 184 (260)
T d1j6oa_ 151 ----------------------KR-GVIHAFSSDY-EWAKKFIDLGFLLGIGGPVT-------------YP--------- 184 (260)
T ss_dssp ----------------------SC-EEETTCCSCH-HHHHHHHHHTEEEEECGGGG-------------CT---------
T ss_pred ----------------------CC-eeeeccccCH-HHHHHHHhCCCceeeccccc-------------cc---------
Confidence 12 4779988776 88888888887776553320 00
Q ss_pred CCCCcccHHHHHHHHhc--CCceEEeCCCCCCChhhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHH
Q 009282 342 PIRASGHNKALQAALAT--GILQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLT 419 (538)
Q Consensus 342 ~~r~~~~~~~l~~~l~~--Gv~~~lgtD~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~a 419 (538)
+. ..++++++. --.+.+-||.+...+. ++....+ - -..+...+..+.+..+++.+++.+..
T Consensus 185 --~~----~~~~~~v~~iPldrlllETD~P~l~p~-------~~~~~~n-~---P~~l~~v~~~iA~~~~~~~~ev~~~~ 247 (260)
T d1j6oa_ 185 --KN----EALREVVKRVGLEYIVLETDCPFLPPQ-------PFRGKRN-E---PKYLKYVVETISQVLGVPEAKVDEAT 247 (260)
T ss_dssp --TC----HHHHHHHHHHCGGGEEECCCBTSCCCG-------GGTTSCC-C---GGGHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred --hH----HHHHHHHHhcccceEEEecCCCCCCCc-------ccCCCCC-C---hHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 00 112333222 1267889996544332 1111000 0 11234444444454569999999999
Q ss_pred hHhHHHHcCC
Q 009282 420 STECARIFNV 429 (538)
Q Consensus 420 T~~~A~~lg~ 429 (538)
+.|.-++++.
T Consensus 248 ~~N~~rlF~~ 257 (260)
T d1j6oa_ 248 TENARRIFLE 257 (260)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9999888753
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.42 E-value=3.4e-09 Score=81.96 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCHHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEE
Q 009282 410 ISVTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 488 (538)
Q Consensus 410 ls~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V 488 (538)
+.+++.+...|.++++.+.++++.|||++||+|||++||.+.+..+ +|.-. ...+..||++||+|
T Consensus 38 vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~~~~~~~l------------~Y~~g--~~~~~~v~~~G~~v 102 (103)
T d2puza1 38 AGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWDIERPAEL------------VYRIG--FNPLHARIFKGQKV 102 (103)
T ss_dssp EEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEECCSSTTHH------------HHCBS--CCCEEEEEETTEEC
T ss_pred cChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEcCCCHHHH------------HHhhc--CCChhEEEECCEEc
Confidence 5566777788999999999999999999999999999997655333 44422 35799999999987
|
| >d2puza1 b.92.1.10 (A:17-79,A:381-420) Imidazolonepropionase {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Imidazolonepropionase species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.19 E-value=1.7e-06 Score=66.34 Aligned_cols=64 Identities=11% Similarity=0.170 Sum_probs=53.9
Q ss_pred cEEEECcEEEcCCC-------ceeeeEEEeCCEEEEecCCCCCC----CCceEEecCCCeeeccccccccccccc
Q 009282 54 KILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVG----DDVKVLDATGKFVMPGGIDPHTHLAME 117 (538)
Q Consensus 54 ~~~i~n~~vv~~~~-------~~~~~V~I~~grI~~Vg~~~~~~----~~~~vID~~G~~v~PGlID~H~H~~~~ 117 (538)
+.+++|++|.|+++ .+++.|+|+||||++||+..+.+ ..+++||++|+++.+.--..+-+....
T Consensus 2 ~~l~~n~~iaTm~~~~~~~g~ie~aAl~v~~g~I~~vG~~~~l~~~~~~aa~viDl~Grlv~i~~Gk~AD~~i~~ 76 (103)
T d2puza1 2 TALWRNAQLATLNPAMDGIGAVENAVIAVRNGRIAFAGPESDLPDDLSTADETTDCGGRWITLEAGKSADFAIWD 76 (103)
T ss_dssp EEEEEEEEEECCCTTSSTTCEEEEEEEEEETTEEEEEEETTSCCGGGSCCSEEEECTTCEEECCTTSBCCEEEEC
T ss_pred cEEEEcCEEEEcCCCCCcchHHHHHHHHhhCCCccccChhhhcchhhhchHhhcCCCCCEEEeeccceeeEEEEc
Confidence 57999999999874 26899999999999999977654 257999999999999888888777654
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.98 E-value=7.8e-07 Score=66.75 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=39.1
Q ss_pred HHcCCCCCCcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 425 RIFNVYPRKGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 425 ~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
....++.++|+|++||.|||++||.+.+..+ +|.-. ...+..||++|++|.
T Consensus 52 ~~~d~~gr~~tlevGk~ADlviwd~~~~~~L------------~Y~~G--~n~i~~vi~~G~~V~ 102 (103)
T d2q09a1 52 HWQDMKGKLVTLRVGMLADFLVWNCGHPAEL------------SYLIG--VDQLVSRVVNGEETL 102 (103)
T ss_dssp TSEECTTCEEECCTTSBCCEEEESSSCTTHH------------HHSCS--CCCEEEEEETTEECC
T ss_pred hhhhcccceEEecCCCccCEEEEcCCCHHHh------------hhhcC--CCCceEEEECCEEee
Confidence 3456778999999999999999997766433 44422 357999999999873
|
| >d2fvka1 b.92.1.3 (A:2-56,A:441-541) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Hydantoinase (dihydropyrimidinase) domain: Dihydropyrimidine amidohydrolase Pyd2 species: Yeast (Saccharomyces kluyveri) [TaxId: 4934]
Probab=97.77 E-value=1.6e-05 Score=66.24 Aligned_cols=71 Identities=31% Similarity=0.498 Sum_probs=62.5
Q ss_pred ccC-CCccEEEEcCCC--------ceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEECCeeeccCCCceEeecC
Q 009282 437 LVG-SDADIIIFNPNS--------SFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWENDELNVVPGSGKYIEMR 507 (538)
Q Consensus 437 ~~G-k~ADlvvld~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~~~~~~~~~~~~~~~~~ 507 (538)
-|| -.||+.+++++. .+.++.+.+++...+++|++....+.+..|+++|+.||++|+++...+.|+|+++.
T Consensus 57 ~pg~~d~Hih~~~~~~~~~~~~~~~~tIs~~~~~~~~~~t~~eg~~~~G~~~~ti~rG~~v~~~g~~~~~~g~G~fi~R~ 136 (156)
T d2fvka1 57 LPGVSDADLVIWYPDDSKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEGEILKENADGKYLKRG 136 (156)
T ss_dssp CTTTSBCCEEEECCSSCCCCCTTSCSBCCTGGGCSSSSCCTTTTCBCSCCEEEEEETTEEEEETTEECGGGCCCCBCCCC
T ss_pred cccccccceEEEeeccccccccccceEEehhhcccccccccceeEEEccceEEEEECCEEEEECCEEEecCCCCcccCCC
Confidence 456 689999998874 34577788889999999999999999999999999999999999998899999865
|
| >d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Plasmodium yoelii [TaxId: 5861]
Probab=97.74 E-value=0.00023 Score=67.80 Aligned_cols=143 Identities=12% Similarity=0.116 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCH
Q 009282 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (538)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~ 294 (538)
..+..+++.|++.|+++.+|+.+.... .+ .+.+..++ ..++.. .+.|+...
T Consensus 201 ~~~~~~f~~ar~~gl~it~HaGE~~~~------------~~-------------~~~i~~ai---~~l~~~-RIgHGv~~ 251 (357)
T d2amxa1 201 KDHKDVYHSVRDHGLHLTVHAGEDATL------------PN-------------LNTLYTAI---NILNVE-RIGHGIRV 251 (357)
T ss_dssp GGGHHHHHHHHHTTCEEEEEESCCTTC------------SS-------------SHHHHHHH---HTSCCS-EEEECGGG
T ss_pred hhhHHHHHHHHhcCCcccccccccCCC------------CC-------------hHHHHHHH---HccCCc-ccccchhe
Confidence 347788999999999999999542110 00 01111111 122332 47787654
Q ss_pred -HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCCh
Q 009282 295 -DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373 (538)
Q Consensus 295 -~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~ 373 (538)
...+.++.++++++.+..||.+......-..+ . .-+++.+++.|++++++||.+..
T Consensus 252 ~~d~~l~~~l~~~~I~leiCPtSN~~~~~~~~~-----------~----------~HP~~~l~~~Gv~v~l~TDDp~~-- 308 (357)
T d2amxa1 252 SESDELIELVKKKDILLEVCPISNLLLNNVKSM-----------D----------THPIRKLYDAGVKVSVNSDDPGM-- 308 (357)
T ss_dssp GGCHHHHHHHHHHTCEEEECHHHHHHTTSSSCS-----------T----------TCTHHHHHHTTCEEEECCBCHHH--
T ss_pred ecCHHHHHHHHHhCceEEECCcchhhhccCCCc-----------c----------cCHHHHHHHCCCeEEEeCCCchh--
Confidence 22378889999999999999874332111110 0 02389999999999999996522
Q ss_pred hhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 374 TQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
+ ...+...+..++...++|.+|.. ..+.|+.++-.+
T Consensus 309 ----------f---------~t~ls~ey~~~~~~~~ls~~el~-~l~~nsi~~sF~ 344 (357)
T d2amxa1 309 ----------F---------LSNINDNYEKLYIHLNFTLEEFM-IMNNWAFEKSFV 344 (357)
T ss_dssp ----------H---------TCCHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHCCS
T ss_pred ----------h---------CCCHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHhCC
Confidence 1 01233333344555569999944 477887776655
|
| >d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: Adenosine/AMP deaminase domain: Adenosine deaminase (ADA) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.68 E-value=0.001 Score=62.93 Aligned_cols=140 Identities=13% Similarity=-0.033 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHcCCCEEEEeccCH
Q 009282 215 ELLIEGFKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATTRAIRLAEFVNTPLYVVHVMSM 294 (538)
Q Consensus 215 ~~l~~~~~~A~~~g~~v~~H~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~h~~~~ 294 (538)
..+.++++.|++.|+++.+|+.+..........+... +.. .+.|....
T Consensus 192 ~~~~~~f~~ar~~gl~~t~HaGE~~~~~~i~~ai~~l-------------------------------~~~-RIGHG~~l 239 (349)
T d1a4ma_ 192 PGHVEAYEGAVKNGIHRTVHAGEVGSPEVVREAVDIL-------------------------------KTE-RVGHGYHT 239 (349)
T ss_dssp HHHHHHHHHHHHHTCEEEEEESSSSCHHHHHHHHHTS-------------------------------CCS-EEEECGGG
T ss_pred HHHHHHHHHHHHcCCceeeccCCCCChHHHHHHHHHh-------------------------------CCc-ccCCceec
Confidence 4577889999999999999995543222222221111 222 57777543
Q ss_pred -HHHHHHHHHHHcCCcEEEeccccccccCcccccCCCcccccceeecCCCCCcccHHHHHHHHhcCCceEEeCCCCCCCh
Q 009282 295 -DAMEEIAKARKAGQRVIGEPVVSGLVLDDSWLWHSDFVTAAKYVMSPPIRASGHNKALQAALATGILQLVGTDHCAFNS 373 (538)
Q Consensus 295 -~~~~~i~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~l~~~l~~Gv~~~lgtD~~~~~~ 373 (538)
.+.+.++.++++++.+-.||.+......-..+. .-++..+++.|++++|+||.+...
T Consensus 240 ~~d~~l~~~~~~~~I~lEvCptSN~~~~~~~~~~---------------------~HP~~~~~~~gv~v~i~TDDp~~f- 297 (349)
T d1a4ma_ 240 IEDEALYNRLLKENMHFEVCPWSSYLTGAWDPKT---------------------THAVVRFKNDKANYSLNTDDPLIF- 297 (349)
T ss_dssp GGSHHHHHHHHHTTCEEEECHHHHHHSSSSCTTS---------------------CCHHHHHHHTTCCEEECCBCTTTT-
T ss_pred ccCHHHHHHhhhcCceEEEcccccccccccCchh---------------------hHHHHHHHHCCCeEEEeCCCcccc-
Confidence 223788889999999999999743321111110 123889999999999999976331
Q ss_pred hhhhcCccCcccCCCCCcchhhhHHHHHHHhhhcCCCCHHHHHHHHhHhHHHHcCC
Q 009282 374 TQKAFGIDDFRKIPNGVNGIEERMHLVWDTMVESGQISVTDYVRLTSTECARIFNV 429 (538)
Q Consensus 374 ~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~ls~~eal~~aT~~~A~~lg~ 429 (538)
+ ..+...+..+....+++.++..+ ...|+-++-.+
T Consensus 298 ---------------~-----t~Ls~Ey~~a~~~~~l~~~~l~~-l~~nsi~~sf~ 332 (349)
T d1a4ma_ 298 ---------------K-----STLDTDYQMTKKDMGFTEEEFKR-LNINAAKSSFL 332 (349)
T ss_dssp ---------------T-----CCHHHHHHHHHHTTTCCHHHHHH-HHHHHHHTSSC
T ss_pred ---------------C-----CCHHHHHHHHHHHhCcCHHHHHH-HHHHHHHHhCC
Confidence 1 12344443455666799988544 56777766655
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.59 E-value=9e-06 Score=65.29 Aligned_cols=77 Identities=17% Similarity=0.172 Sum_probs=50.9
Q ss_pred HHHHHHHHhHhHHHHcCCCCCCcccccCCCccEEEEcCCCceeeccC---------------cccCCCCCCccCCeEEee
Q 009282 412 VTDYVRLTSTECARIFNVYPRKGAILVGSDADIIIFNPNSSFEITAR---------------SHHSRLDTNVYEGRRVKG 476 (538)
Q Consensus 412 ~~eal~~aT~~~A~~lg~~~~~GsI~~Gk~ADlvvld~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 476 (538)
+.+.|+.. .-.|+.+++++++|.++|||.|||||+|.+...-+... ++.+..-...+.|- .+
T Consensus 48 ~~~~l~~~-~pga~v~d~~d~lg~F~~GkEADfvVlD~~~tp~~~~r~~~~~~~~~~~~~~~~l~e~Lf~l~~lGD--DR 124 (140)
T d2ooda1 48 PYEKIAAA-HPGVEITHIKDRIIVFEPGKEADFVALDPNGGQLAQPWHQSLIADGAGPRTVDEAASMLFAVMMVGD--DR 124 (140)
T ss_dssp EHHHHHHH-STTCEEEEEEEEEEECCTTSBCCEEEECTTCSSTTHHHHHTTC--CCSCCSHHHHHHHHHHHHHHCC--GG
T ss_pred CHHHHhhc-CCCceEEecCCceEeccCCCeecEEEECCCCChHHHhhhhhcccccccchhhhhHHHHHHHHhhccC--CC
Confidence 66667754 45789999999999999999999999997643211000 00000000112232 35
Q ss_pred EEEEEEECCEEEEEC
Q 009282 477 KVEVTIAGGRVVWEN 491 (538)
Q Consensus 477 ~v~~V~v~G~~V~~~ 491 (538)
.|..|||.|+.||+.
T Consensus 125 ~I~~t~V~G~~v~~r 139 (140)
T d2ooda1 125 CVDETWVMGKRLYKK 139 (140)
T ss_dssp GEEEEEETTEEEEEC
T ss_pred ceEEEEECCEEEeec
Confidence 899999999999985
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=97.32 E-value=0.00022 Score=47.37 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=41.1
Q ss_pred EEECcEEEcCC-CceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeeccccccccccc
Q 009282 56 LIKGGTVVNAH-HQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGIDPHTHLA 115 (538)
Q Consensus 56 ~i~n~~vv~~~-~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlID~H~H~~ 115 (538)
++.++.|+|+- +..-++|-+++|+|..|-.....|. .++||||+|.|.|-.
T Consensus 2 ~iE~VLIVDPidGEyTGdvEf~e~kI~~I~k~ectp~---------~ilMP~f~dg~~a~~ 53 (76)
T d1o12a1 2 IVEKVLIVDPIDGEFTGDVEIEEGKIVKVEKRECIPR---------GVLMPRIAEGTRADL 53 (76)
T ss_dssp EEEEEEEEETTTEEEEEEEEEETTEEEEEEECCSCCS---------SEEEECCSTTSBCCE
T ss_pred ceeeEEEEcCCCCcEeeeEEecCcEEEEEEEeccCCC---------eEEcccccCCccccE
Confidence 67888999875 4578999999999999977544332 589999999999854
|
| >d2uz9a1 b.92.1.4 (A:8-75,A:389-451) Guanine deaminase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=2e-05 Score=63.04 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=39.7
Q ss_pred HcCCCCCCcccccCCCccEEEEcCCCcee---e-----ccCcccCCCCCCccCCeEEeeEEEEEEECCEEEE
Q 009282 426 IFNVYPRKGAILVGSDADIIIFNPNSSFE---I-----TARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVW 489 (538)
Q Consensus 426 ~lg~~~~~GsI~~Gk~ADlvvld~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~ 489 (538)
.|.. ++.|..++||.||++|+|.+.... . ..+.+.+......|.|- .+.|..|||+|+.|.
T Consensus 60 al~~-~~~g~FevGkeaD~ivID~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~gd--dr~I~~v~V~G~~Vv 128 (131)
T d2uz9a1 60 ELSH-HEFFMFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGD--DRNIEEVYVGGKQVV 128 (131)
T ss_dssp ECCT-TCEEECCTTSBCCEEEECTTCTTCSCCCCTHHHHSSSTTHHHHHHHHHCC--GGGEEEEEETTEEEE
T ss_pred Hhhh-ccccccccCccccEEEEECCCccchhhhhccccccCcHHHHHHHHhhcCC--CCcEeEEEECCEEeC
Confidence 3443 789999999999999999765310 0 01112222222344444 468999999999985
|
| >d2q09a1 b.92.1.10 (A:4-65,A:367-407) Probable 4-imidazolone-5-propanoate amidohydrolase GOS_1928421 {Environmental samples} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Imidazolonepropionase-like domain: Probable 4-imidazolone-5-propanoate amidohydrolase GOS 1928421 species: Environmental samples
Probab=97.23 E-value=0.00016 Score=53.95 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=43.2
Q ss_pred cEEEECcEEEcCCC-------ceeeeEEEeCCEEEEecCCCCCC--CCceEEecCCCeee--ccc
Q 009282 54 KILIKGGTVVNAHH-------QQIADVYVEDGIVVAVQPNINVG--DDVKVLDATGKFVM--PGG 107 (538)
Q Consensus 54 ~~~i~n~~vv~~~~-------~~~~~V~I~~grI~~Vg~~~~~~--~~~~vID~~G~~v~--PGl 107 (538)
+.+++|+++-|+++ +++++|+|++|||.+||+..+.| .+....|++|+++. +|.
T Consensus 3 d~lw~n~~lATm~~~~~~yG~ie~~ai~v~~g~I~~vgp~~~lpa~~~~~~~d~~gr~~tlevGk 67 (103)
T d2q09a1 3 ERVWLNVTPATLRSDLADYGLLEPHALGVHEGRIHALVPMQDLKGPYPAHWQDMKGKLVTLRVGM 67 (103)
T ss_dssp SEEEEEEEEBCCCTTSSTTCBCSSEEEEEETTEEEEEEEGGGCC--CCTTSEECTTCEEECCTTS
T ss_pred ceeeecCEEEEecCCCCCcceeccceEEEeCCeEEEEEehhhCCccccchhhhcccceEEecCCC
Confidence 57899999999864 26899999999999999976665 24567899999754 553
|
| >d2dvta1 c.1.9.15 (A:1-325) Thermophilic reversible gamma-resorcylate decarboxylase {Rhizobium sp. MTP-10005 [TaxId: 267998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Thermophilic reversible gamma-resorcylate decarboxylase species: Rhizobium sp. MTP-10005 [TaxId: 267998]
Probab=97.21 E-value=0.0047 Score=57.55 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCC-----CccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKG-----SFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~-----~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
++..+++++..++.|..++++...+.+ ....+.+.+..+++.|.++|+++.+|...
T Consensus 107 ~~a~~el~r~~~~~g~~Gv~l~~~~~~~~~~~~~~~~d~~~~pi~~~~~e~~lpv~iH~~~ 167 (325)
T d2dvta1 107 DAATEELQRCVNDLGFVGALVNGFSQEGDGQTPLYYDLPQYRPFWGEVEKLDVPFYLHPRN 167 (325)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSBCCTTCCSCBCTTSGGGHHHHHHHHHHTCCEEEECCC
T ss_pred chhhhhhhhhhhcccceEEEEeCCCcCCCCCCcccccCcccchHHHHHhhCCceEEEecCC
Confidence 457788888887789999988654432 13456778999999999999999999854
|
| >d2f6ka1 c.1.9.15 (A:2-307) Putative amidohydrolase LP2961 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative amidohydrolase LP2961 species: Lactobacillus plantarum [TaxId: 1590]
Probab=96.93 E-value=0.032 Score=51.11 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcC
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAE 236 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~ 236 (538)
++..+++++..++.|+.++++...+.+. .++.+.+..+++.|.++|++|.+|..
T Consensus 102 ~~a~~el~r~~~~~G~~Gi~~~~~~~~~-~~~dp~~~pi~~~~~e~~lpv~~H~~ 155 (306)
T d2f6ka1 102 LDAVKTVQQALDQDGALGVTVPTNSRGL-YFGSPVLERVYQELDARQAIVALHPN 155 (306)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEESEETTE-ETTCGGGHHHHHHHHTTTCEEEEECC
T ss_pred hHHHHHHHHHHhcccceEEEecCccccc-cCCCccchHHHHHHHHcCCceEeccC
Confidence 4567778887756799999987655544 35667799999999999999999964
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=96.46 E-value=0.0019 Score=47.81 Aligned_cols=50 Identities=18% Similarity=0.269 Sum_probs=40.4
Q ss_pred ccEEEECcEEEcCCCceeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecc
Q 009282 53 SKILIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPG 106 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PG 106 (538)
.|++|+|++.+++. .-+|.|++|||++||+....+ ..+++|+.|+.=+-|
T Consensus 2 ~d~~i~~~~~~~g~---~~diai~~~ki~a~~~~~~~~-a~~~~~L~~~~y~sG 51 (101)
T d2icsa1 2 YDLLIKNGQTVNGM---PVEIAIKEKKIAAVAATISGS-AKETIHLEPGTYVSA 51 (101)
T ss_dssp EEEEEEEEECTTSC---EEEEEEETTEEEEEESCCCCC-EEEEEECCTTCEEEE
T ss_pred ccEEEEcceecCCC---eEEEEeccCeeeeeccccccc-chheEecCCceeeee
Confidence 47899999998876 569999999999999876544 589999998643333
|
| >d2icsa1 b.92.1.8 (A:4-54,A:322-371) Putative adenine deaminase EF0837 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Adenine deaminase domain: Putative adenine deaminase EF0837 species: Enterococcus faecalis [TaxId: 1351]
Probab=95.86 E-value=0.0015 Score=48.34 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=40.0
Q ss_pred HhHhHHHHcCCCCC---CcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEe----eEEEEEEECCEEEEE
Q 009282 419 TSTECARIFNVYPR---KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVK----GKVEVTIAGGRVVWE 490 (538)
Q Consensus 419 aT~~~A~~lg~~~~---~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~V~v~G~~V~~ 490 (538)
+|..+++.+.+... .|+|++|..||+.||+-..-... ..-.+|.... -.+..++++|+ +|+
T Consensus 33 ~~~~a~~~~~L~~~~y~sGtL~vG~~ADiTIf~l~~g~~~----------~~Ds~G~~~~g~~~L~P~~tI~~G~-vyd 100 (101)
T d2icsa1 33 ISGSAKETIHLEPGTYVSATLEIGKDADLTIFTIQAEEKT----------LTDSNGLTRVAKEQIRPIKTIIGGQ-IYD 100 (101)
T ss_dssp CCCCEEEEEECCTTCEEEESCCTTSBCCEEEEEEEEEEEE----------EECTTSCEEEEEEEEEEEEEEETTE-EEE
T ss_pred ccccchheEecCCceeeeeEecCCCeeeEEEEEEecCceE----------EEeCCCCEEEeeEEEeEEEEEECCE-Eec
Confidence 35578888888543 69999999999999984322111 1112222222 25889999998 665
|
| >d2ffia1 c.1.9.15 (A:10-280) Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 species: Pseudomonas putida [TaxId: 303]
Probab=95.78 E-value=0.072 Score=46.71 Aligned_cols=126 Identities=10% Similarity=-0.005 Sum_probs=62.1
Q ss_pred cccccccccccc------CC--CCChhhHHHHHHHHHhCCcEEEecccCCCCCCHHHHHHHHHHHhcccceeeeeeeeee
Q 009282 107 GIDPHTHLAMEF------MG--SETIDDFFSGQAAALAGGTTMHIDFVIPINGSLTAGFEAYEKKAKNSCMDYGFHMAIT 178 (538)
Q Consensus 107 lID~H~H~~~~~------~~--~~~~~~~~~~~~~~l~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (538)
-||+|+|++..- .+ .......+.....+-++||+..+-+.........+......+..+.....++. ..
T Consensus 5 ~ID~H~Hl~~~~~~~~~~~~~~~~~~~~~e~ll~~m~~~gI~~~vl~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~ 81 (271)
T d2ffia1 5 AIDSHAHVFSRGLNLASQRRYAPNYDAPLGDYLGQLRAHGFSHGVLVQPSFLGTDNRYLLSALQTVPGQLRGVVM---LE 81 (271)
T ss_dssp CEEBCCCCBCHHHHHHTTCCSSCCSCBCHHHHHHHHHHTSCCEECCBCCGGGTTCCHHHHHHHHHSTTTBCCBBC---CC
T ss_pred EEeeeecccCCccccccccCCCCCCCCCHHHHHHHHHHcCCCEEEEECCCcccchhHHHHHHHHhhcCceEEEEE---Ee
Confidence 489999985430 00 01111234446667789999765332111111112222222222221111111 11
Q ss_pred cCChhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 179 KWDEVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 179 ~~~~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
.... .....++. ..+...++...........+...++.+++.+.+++..+..|....
T Consensus 82 ~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (271)
T d2ffia1 82 RDVE--QATLAEMA-RLGVRGVRLNLMGQDMPDLTGAQWRPLLERIGEQGWHVELHRQVA 138 (271)
T ss_dssp SSCC--HHHHHHHH-TTTCCEEECCCSSSCCCCTTSTTTHHHHHHHHHHTCEEEECSCTT
T ss_pred cccc--hHHHHHHH-HhhhccceeccccccCCCcccHhHHHHHHHHHHhCCCcccccCcc
Confidence 1111 22233333 455555554433333344566778899999999999999998543
|
| >d1ra0a1 b.92.1.2 (A:4-55,A:376-426) Cytosine deaminase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Cytosine deaminase domain: Cytosine deaminase species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.0045 Score=45.76 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=39.5
Q ss_pred EEECcEEEcCCCceeeeEEEeCCEEEEecCCCCC-CCCceEEecCCCeeecccc
Q 009282 56 LIKGGTVVNAHHQQIADVYVEDGIVVAVQPNINV-GDDVKVLDATGKFVMPGGI 108 (538)
Q Consensus 56 ~i~n~~vv~~~~~~~~~V~I~~grI~~Vg~~~~~-~~~~~vID~~G~~v~PGlI 108 (538)
.|+|+++-.-++ -.+|.|+||+|.+|.+.... +.....+|++|.+++|=+|
T Consensus 4 ~I~NarL~gr~G--L~~I~I~~G~i~~I~pq~~~~~~~~d~lDa~GgL~~p~~i 55 (103)
T d1ra0a1 4 TIINARLPGEEG--LWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPLII 55 (103)
T ss_dssp EEEEEBCTTCCS--EEEEEEETTEEEEEEEESSCCCCCTTEEECTTCEEESEEE
T ss_pred eEEEEEeCCCCc--EEEEEecCCEEeeeecCCccccCCCcceeccCCcccCcEE
Confidence 588888865554 46899999999999975543 3456789999999999433
|
| >d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Xaa-Pro dipeptidase species: Alteromonas macleodii [TaxId: 28108]
Probab=93.57 E-value=0.026 Score=41.60 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=31.5
Q ss_pred CcccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEE
Q 009282 433 KGAILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVV 488 (538)
Q Consensus 433 ~GsI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V 488 (538)
...|++|+.||++++++||..++.. ..++..|+++|++.
T Consensus 56 ~PGL~~g~~~d~~~~~~~P~~di~~-----------------~~~v~~v~~~G~~~ 94 (96)
T d2qs8a1 56 LPSIESGKLADLIAVKGNPIEDISV-----------------LENVDVVIKDGLLY 94 (96)
T ss_dssp EESCCTTSBCCEEEESSCTTTCGGG-----------------GGGEEEEEETTEEE
T ss_pred ccCccccCcccEEEEcCChhHHhHh-----------------hcCccEEEECCEEe
Confidence 4569999999999999998766532 45789999999764
|
| >d1o12a1 b.92.1.5 (A:1-43,A:332-364) N-acetylglucosamine-6-phosphate deacetylase, NagA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: N-acetylglucosamine-6-phosphate deacetylase, NagA domain: N-acetylglucosamine-6-phosphate deacetylase, NagA species: Thermotoga maritima [TaxId: 2336]
Probab=92.97 E-value=0.078 Score=34.90 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=27.6
Q ss_pred ccccCCCccEEEEcCCCceeeccCcccCCCCCCccCCeEEeeEEEEEEECCEEEEEC
Q 009282 435 AILVGSDADIIIFNPNSSFEITARSHHSRLDTNVYEGRRVKGKVEVTIAGGRVVWEN 491 (538)
Q Consensus 435 sI~~Gk~ADlvvld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~v~G~~V~~~ 491 (538)
.+..|..||||++|.+ -+|..+++.|..||+.
T Consensus 44 ~f~dg~~a~~Vlld~~-------------------------l~v~~tv~~g~~v~~~ 75 (76)
T d1o12a1 44 RIAEGTRADLVLLDED-------------------------LNVVMTIKEGEVVFRS 75 (76)
T ss_dssp CCSTTSBCCEEEECTT-------------------------CCEEEEEETTEEEEEC
T ss_pred cccCCccccEEEEcCC-------------------------ceEEEEEeeccEEEec
Confidence 5788999999999955 2688999999999975
|
| >d3be7a1 b.92.1.9 (A:3-56,A:360-400) Zn-dependent arginine carboxypeptidase {Unidentified organism [TaxId: 32644]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: Zn-dependent arginine carboxypeptidase-like domain: Zn-dependent arginine carboxypeptidase species: Unidentified organism [TaxId: 32644]
Probab=89.14 E-value=0.46 Score=34.19 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=49.0
Q ss_pred ccEEEECcEEEcCCCc--eeeeEEEeCCEEEEecCCCCCCCCceEEecCCCeeecccc---ccccccccc
Q 009282 53 SKILIKGGTVVNAHHQ--QIADVYVEDGIVVAVQPNINVGDDVKVLDATGKFVMPGGI---DPHTHLAME 117 (538)
Q Consensus 53 ~~~~i~n~~vv~~~~~--~~~~V~I~~grI~~Vg~~~~~~~~~~vID~~G~~v~PGlI---D~H~H~~~~ 117 (538)
.+++|+.-.+++.... ...+++|++|.|.+|+.-.. ..++++...+++++|++- ++|.++...
T Consensus 2 ~d~~~~pk~yL~~~~g~li~a~l~v~~G~i~ai~~~t~--~~A~il~l~d~illG~I~~Gk~ADlvlvdg 69 (95)
T d3be7a1 2 EDFLIKSKGYLDIQTGEIIKADLLIRNGKIAEIGKINT--KDATVISIPDLILIPQIKEGFDADIVGVIE 69 (95)
T ss_dssp CCEEEEEEEEECTTTCCEECCEEEEETTEEEEEECCCC--SSSEEEEEEEEEEEESCCTTSBCCEEEESS
T ss_pred CceEecCcceeccccchhhhhhhhhhcCcHHHHHhhcc--ChHHhcCCCCccccceeccCceeeEEEEcC
Confidence 4688999999886543 57899999999999986322 358999999988778875 777776654
|
| >d2ooda1 b.92.1.4 (A:3-72,A:398-467) Guanine deaminase {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Composite domain of metallo-dependent hydrolases superfamily: Composite domain of metallo-dependent hydrolases family: SAH/MTA deaminase-like domain: Guanine deaminase species: Bradyrhizobium japonicum [TaxId: 375]
Probab=86.57 E-value=0.09 Score=41.34 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=27.9
Q ss_pred eeeeEEEeCCEEEEecCCCCC---CCCceEEecCCCee
Q 009282 69 QIADVYVEDGIVVAVQPNINV---GDDVKVLDATGKFV 103 (538)
Q Consensus 69 ~~~~V~I~~grI~~Vg~~~~~---~~~~~vID~~G~~v 103 (538)
+++-++|+||+|+++|+.... .++++++|.+++++
T Consensus 32 ~DG~llie~G~I~a~G~~~~l~~~~pga~v~d~~d~lg 69 (140)
T d2ooda1 32 QDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRII 69 (140)
T ss_dssp EEEEEEEESSBEEEEEEHHHHHHHSTTCEEEEEEEEEE
T ss_pred cCcEEEEeCCEEEEecCHHHHhhcCCCceEEecCCceE
Confidence 589999999999999974322 34789999988754
|
| >d2hbva1 c.1.9.15 (A:3-333) 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 2-amino-3-carboxymuconate 6-semialdehyde decarboxylase NbaD species: Pseudomonas fluorescens [TaxId: 294]
Probab=86.31 E-value=1.8 Score=39.03 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCCCccCCHHHHHHHHHHHHhcCCeEEEEcCC
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKGSFMINDELLIEGFKRCKSLGALAMVHAEN 237 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~~H~~~ 237 (538)
++..+++++.. +.|..++++...+.+ ...+.+.+..+++.|.++|+++.+|...
T Consensus 125 ~~a~~el~r~~-~~g~~g~~l~~~~~~-~~~~d~~~~p~~~~~~e~~~pv~iH~~~ 178 (331)
T d2hbva1 125 DLACKEASRAV-AAGHLGIQIGNHLGD-KDLDDATLEAFLTHCANEDIPILVHPWD 178 (331)
T ss_dssp HHHHHHHHHHH-HHTCCCEEEESCBTT-BCTTSHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhhHHHHhh-hhcceeeeecccccC-cccccchhhHHHHHHhccCCceEEecCC
Confidence 45667777776 678888888654433 4457888999999999999999999843
|
| >d2gwga1 c.1.9.15 (A:1-342) 4-oxalomesaconate hydratase LigJ {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Metallo-dependent hydrolases family: PP1699/LP2961-like domain: 4-oxalomesaconate hydratase LigJ species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=82.30 E-value=1.8 Score=38.99 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEeeeCC----CccCCHHHHHHHHHHHHhcCCeEEEEcCCh
Q 009282 182 EVVSDEMEVMVKEKGINSFKFFMAYKG----SFMINDELLIEGFKRCKSLGALAMVHAENG 238 (538)
Q Consensus 182 ~~~~~~~~~~~~~~g~~~ik~~~~~~~----~~~~~~~~l~~~~~~A~~~g~~v~~H~~~~ 238 (538)
++...++.+.....+..++++.....+ ...++.+.+..+++.|.++|+++.+|....
T Consensus 122 ~~a~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~glpv~~H~~~~ 182 (342)
T d2gwga1 122 KTCIPELEKCVKEYGFVAINLNPDPSGGHWTSPPLTDRIWYPIYEKMVELEIPAMIHVSTS 182 (342)
T ss_dssp GGGHHHHHHHHHTSCCCEEEECSCTTSSCCCSCCTTSGGGHHHHHHHHHHTCCEEECCCC-
T ss_pred HHHHHHHhhhHhhccceEEEEeccccccccCCCCCCCHHHHHHHHHhhcCCCeEEEccCCC
Confidence 466777777776788899988654322 234577889999999999999999999554
|