Citrus Sinensis ID: 009293
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | 2.2.26 [Sep-21-2011] | |||||||
| Q2JD48 | 502 | UDP-N-acetylmuramate--L-a | yes | no | 0.739 | 0.792 | 0.400 | 1e-71 | |
| A6TJM2 | 460 | UDP-N-acetylmuramate--L-a | yes | no | 0.702 | 0.821 | 0.350 | 5e-68 | |
| Q8R749 | 460 | UDP-N-acetylmuramate--L-a | yes | no | 0.702 | 0.821 | 0.346 | 3e-67 | |
| A9FI59 | 469 | UDP-N-acetylmuramate--L-a | yes | no | 0.713 | 0.818 | 0.362 | 6e-67 | |
| B9MND8 | 455 | UDP-N-acetylmuramate--L-a | yes | no | 0.698 | 0.826 | 0.364 | 2e-66 | |
| Q97E89 | 458 | UDP-N-acetylmuramate--L-a | yes | no | 0.711 | 0.836 | 0.351 | 8e-65 | |
| A4J2B2 | 462 | UDP-N-acetylmuramate--L-a | yes | no | 0.721 | 0.839 | 0.362 | 1e-64 | |
| Q313Q2 | 454 | UDP-N-acetylmuramate--L-a | yes | no | 0.698 | 0.828 | 0.355 | 2e-64 | |
| A8MK48 | 465 | UDP-N-acetylmuramate--L-a | yes | no | 0.698 | 0.808 | 0.337 | 7e-64 | |
| A4XGE5 | 455 | UDP-N-acetylmuramate--L-a | yes | no | 0.698 | 0.826 | 0.364 | 1e-63 |
| >sp|Q2JD48|MURC_FRASC UDP-N-acetylmuramate--L-alanine ligase OS=Frankia sp. (strain CcI3) GN=murC PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 176/439 (40%), Positives = 246/439 (56%), Gaps = 41/439 (9%)
Query: 73 NRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNI 132
R +HF+GIGGSGLS LA++ L G VSGSD S + L G + IG +
Sbjct: 4 QRTQHVHFLGIGGSGLSPLAQIHLAGGGTVSGSDSEDSPRVATLRARGVPIRIGATPGPA 63
Query: 133 QGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGK 192
+ VVASSA+P D+ EI+ A+++G+P+ +R WL +LT Y L+AV+GSHGK
Sbjct: 64 AFAAELAGADVVVASSALPDDHPEIVAARALGLPVRRRSEWLPELTAGYRLVAVAGSHGK 123
Query: 193 STTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSV 252
STT++ML VL+A G D TA++GA V Q G+ G G FVLE+DEY G F GL PS+
Sbjct: 124 STTSAMLTLVLRAAGLDPTAVIGAEVSQL-GGNALAGSGDVFVLESDEYGGAFAGLDPSI 182
Query: 253 AVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLK 312
AV+TN++WEH D+F DE +V++ F F +++R GG LV+CGD ++L ++ G +
Sbjct: 183 AVITNVEWEHPDVFPDEASVRTAFAAFARRVRPGGRLVVCGDHPGVVAVLTEL----GRQ 238
Query: 313 YSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDY---ILCERGRPL 369
G V+ +D +I YGF + W A V G D + G+ +
Sbjct: 239 RPGNDVAV---------NDVAVIDYGFGAERHWRAVDVV--TTAGDDMTRATVLRAGQEI 287
Query: 370 AQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTI 429
++L +PG H+VLN+LAV+AT L + A L+ F G +RRF+ +G
Sbjct: 288 GALTLTVPGRHSVLNALAVLATATEL-------GVAPAQTLTTLTTFTGAARRFEFVGFW 340
Query: 430 YG---------------CHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLV 474
G + DD+AHHPTEVR L AAR R + + V QPHT+SR
Sbjct: 341 NGPADSTGVGPAGGPGSLEVIDDYAHHPTEVRLTLAAARSRARGRQIWTVLQPHTFSRFA 400
Query: 475 VLKDDFANALSEADQVVVS 493
L DDFA A S+AD+V V+
Sbjct: 401 ALLDDFAAAFSDADRVYVT 419
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Cell wall formation. Frankia sp. (strain CcI3) (taxid: 106370) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 8 |
| >sp|A6TJM2|MURC_ALKMQ UDP-N-acetylmuramate--L-alanine ligase OS=Alkaliphilus metalliredigens (strain QYMF) GN=murC PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q8R749|MURC_THETN UDP-N-acetylmuramate--L-alanine ligase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=murC PE=3 SV=1 | Back alignment and function description |
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| >sp|A9FI59|MURC_SORC5 UDP-N-acetylmuramate--L-alanine ligase OS=Sorangium cellulosum (strain So ce56) GN=murC PE=3 SV=1 | Back alignment and function description |
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| >sp|B9MND8|MURC_CALBD UDP-N-acetylmuramate--L-alanine ligase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=murC PE=3 SV=1 | Back alignment and function description |
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| >sp|Q97E89|MURC_CLOAB UDP-N-acetylmuramate--L-alanine ligase OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=murC PE=3 SV=1 | Back alignment and function description |
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| >sp|A4J2B2|MURC_DESRM UDP-N-acetylmuramate--L-alanine ligase OS=Desulfotomaculum reducens (strain MI-1) GN=murC PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|Q313Q2|MURC_DESDG UDP-N-acetylmuramate--L-alanine ligase OS=Desulfovibrio desulfuricans (strain G20) GN=murC PE=3 SV=1 | Back alignment and function description |
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| >sp|A8MK48|MURC_ALKOO UDP-N-acetylmuramate--L-alanine ligase OS=Alkaliphilus oremlandii (strain OhILAs) GN=murC PE=3 SV=1 | Back alignment and function description |
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| >sp|A4XGE5|MURC_CALS8 UDP-N-acetylmuramate--L-alanine ligase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=murC PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| 302143800 | 626 | unnamed protein product [Vitis vinifera] | 0.799 | 0.686 | 0.711 | 1e-180 | |
| 359490615 | 541 | PREDICTED: UDP-N-acetylmuramate--L-alani | 0.801 | 0.796 | 0.704 | 1e-177 | |
| 302767366 | 521 | hypothetical protein SELMODRAFT_408505 [ | 0.730 | 0.754 | 0.504 | 1e-114 | |
| 76880190 | 615 | UDP-N-acetylmuramate-alanine ligase [Phy | 0.775 | 0.678 | 0.505 | 1e-112 | |
| 168048570 | 680 | predicted protein [Physcomitrella patens | 0.752 | 0.595 | 0.445 | 1e-101 | |
| 302754970 | 499 | hypothetical protein SELMODRAFT_402370 [ | 0.678 | 0.731 | 0.467 | 1e-99 | |
| 303273394 | 594 | udp-n-acetylmuramate-alanine ligase [Mic | 0.763 | 0.691 | 0.364 | 3e-80 | |
| 336178956 | 500 | UDP-N-acetylmuramate--L-alanine ligase [ | 0.750 | 0.808 | 0.418 | 2e-78 | |
| 358463501 | 494 | UDP-N-acetylmuramate--L-alanine ligase [ | 0.724 | 0.789 | 0.393 | 2e-74 | |
| 288919056 | 573 | UDP-N-acetylmuramate/alanine ligase [Fra | 0.769 | 0.722 | 0.385 | 3e-71 |
| >gi|302143800|emb|CBI22661.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 308/433 (71%), Positives = 360/433 (83%), Gaps = 3/433 (0%)
Query: 63 RNEECIVDFKNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGAN 122
+NEE V NRKGWIHFVGIGGSGLSALA LALKQGFEVSGSD+VWSS+++GL E GA
Sbjct: 40 KNEESFV-LGNRKGWIHFVGIGGSGLSALAMLALKQGFEVSGSDIVWSSFLDGLKETGAQ 98
Query: 123 LHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYN 182
LH+GHS SNIQ N+GS P+A+V SSAIPQDN+EILHAKSVG+P+YKR WL KLTE YN
Sbjct: 99 LHLGHSESNIQRNNGSSLPDAIVVSSAIPQDNLEILHAKSVGIPVYKRGNWLGKLTEHYN 158
Query: 183 LIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYD 242
LIAVSG+HGKSTTASMLAYVLK+MGDDLTA+VGA VPQF G+I G G+NFVLEADEYD
Sbjct: 159 LIAVSGTHGKSTTASMLAYVLKSMGDDLTAVVGAQVPQFGGGNIMSGSGRNFVLEADEYD 218
Query: 243 GCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLL 302
CFLGL P +AVVTN+DWEHVDIF DE+AVK+IFRRFLKQIRVGGHL++CGDS A SLL
Sbjct: 219 CCFLGLLPYIAVVTNVDWEHVDIFPDEEAVKAIFRRFLKQIRVGGHLILCGDSAGACSLL 278
Query: 303 DQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYIL 362
D ++ T +S G +S +SD G Y+I T+G S N+W+A S+ PN QGGSD++L
Sbjct: 279 DDTEESTVADHSSGKLSTLNSDKCSDG--YRITTFGISRTNEWHALSIRPNSQGGSDFVL 336
Query: 363 CERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRR 422
C RG P+A I+LQIPGVHNVLNSLAVIATV+ L+ D RQS+ESI C+K+ L+ F+GVSRR
Sbjct: 337 CHRGYPVANITLQIPGVHNVLNSLAVIATVMALVSDGRQSYESINCVKIHLNNFVGVSRR 396
Query: 423 FDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFAN 482
F+LIGT+ GC IYDD+AHHPTEVRAVLQAARQRFP KAL+ VFQPHTYSRL LK DFA
Sbjct: 397 FELIGTVCGCLIYDDYAHHPTEVRAVLQAARQRFPLKALLVVFQPHTYSRLAALKSDFAT 456
Query: 483 ALSEADQVVVSAV 495
A S+ADQV+V+ +
Sbjct: 457 AFSDADQVLVTEI 469
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490615|ref|XP_003634123.1| PREDICTED: UDP-N-acetylmuramate--L-alanine ligase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|302767366|ref|XP_002967103.1| hypothetical protein SELMODRAFT_408505 [Selaginella moellendorffii] gi|300165094|gb|EFJ31702.1| hypothetical protein SELMODRAFT_408505 [Selaginella moellendorffii] | Back alignment and taxonomy information |
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| >gi|76880190|dbj|BAE45866.1| UDP-N-acetylmuramate-alanine ligase [Physcomitrella patens] | Back alignment and taxonomy information |
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| >gi|168048570|ref|XP_001776739.1| predicted protein [Physcomitrella patens subsp. patens] gi|162671888|gb|EDQ58433.1| predicted protein [Physcomitrella patens subsp. patens] | Back alignment and taxonomy information |
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| >gi|302754970|ref|XP_002960909.1| hypothetical protein SELMODRAFT_402370 [Selaginella moellendorffii] gi|300171848|gb|EFJ38448.1| hypothetical protein SELMODRAFT_402370 [Selaginella moellendorffii] | Back alignment and taxonomy information |
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| >gi|303273394|ref|XP_003056058.1| udp-n-acetylmuramate-alanine ligase [Micromonas pusilla CCMP1545] gi|226462142|gb|EEH59434.1| udp-n-acetylmuramate-alanine ligase [Micromonas pusilla CCMP1545] | Back alignment and taxonomy information |
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| >gi|336178956|ref|YP_004584331.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia symbiont of Datisca glomerata] gi|334859936|gb|AEH10410.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia symbiont of Datisca glomerata] | Back alignment and taxonomy information |
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| >gi|358463501|ref|ZP_09173545.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia sp. CN3] gi|357070141|gb|EHI79900.1| UDP-N-acetylmuramate--L-alanine ligase [Frankia sp. CN3] | Back alignment and taxonomy information |
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| >gi|288919056|ref|ZP_06413397.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f] gi|288349596|gb|EFC83832.1| UDP-N-acetylmuramate/alanine ligase [Frankia sp. EUN1f] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 538 | ||||||
| TIGR_CMR|CHY_2068 | 464 | CHY_2068 "UDP-N-acetylmuramate | 0.416 | 0.482 | 0.369 | 3.3e-55 | |
| TIGR_CMR|GSU_3068 | 462 | GSU_3068 "UDP-N-acetylmuramate | 0.412 | 0.480 | 0.362 | 1.2e-52 | |
| UNIPROTKB|P17952 | 491 | murC [Escherichia coli K-12 (t | 0.475 | 0.521 | 0.329 | 1.9e-48 | |
| TIGR_CMR|SO_4218 | 488 | SO_4218 "UDP-N-acetylmuramate- | 0.414 | 0.456 | 0.346 | 5.6e-48 | |
| TIGR_CMR|CPS_4464 | 503 | CPS_4464 "UDP-N-acetylmuramate | 0.468 | 0.500 | 0.307 | 8.9e-48 | |
| TIGR_CMR|SPO_1196 | 465 | SPO_1196 "UDP-N-acetylmuramate | 0.414 | 0.479 | 0.356 | 3.8e-47 | |
| UNIPROTKB|Q9KPG8 | 486 | murC "UDP-N-acetylmuramate--L- | 0.414 | 0.458 | 0.316 | 6.5e-47 | |
| TIGR_CMR|VC_2400 | 486 | VC_2400 "UDP-N-acetylmuramate- | 0.414 | 0.458 | 0.316 | 6.5e-47 | |
| TIGR_CMR|CBU_0136 | 465 | CBU_0136 "UDP-N-acetylmuramate | 0.403 | 0.466 | 0.333 | 1.7e-44 | |
| UNIPROTKB|P65472 | 494 | murC "UDP-N-acetylmuramate--L- | 0.429 | 0.467 | 0.347 | 3e-42 |
| TIGR_CMR|CHY_2068 CHY_2068 "UDP-N-acetylmuramate--alanine ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 85/230 (36%), Positives = 126/230 (54%)
Query: 78 IHFVGIXXXXXXXXXXXXXXQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
+HF+ I +G+ VSGSDL + + L G + IGH N+ +D
Sbjct: 18 VHFIAIGGIGMSGLARILQSKGYRVSGSDLKETELTKKLRAEGITVFIGHREENL-ASDV 76
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
S VV S+A+ QDN E+L AK +G+P+ R LA+L ++ IAV+G+HGK+TT+S
Sbjct: 77 S----LVVVSTAVSQDNPELLKAKRLGIPVMHRGELLARLMQEKKGIAVAGTHGKTTTSS 132
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
M+AYVL+ G D VG + + G G+ V EADE DG FL L P AV+TN
Sbjct: 133 MIAYVLEKEGFDPVIAVGGEIVDLGYNAKA-GQGEYMVAEADESDGSFLKLLPYAAVITN 191
Query: 258 LDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQ 307
++ +H+D ++ + +K F++F IR G V C D+ R +L K+
Sbjct: 192 IEADHLDYYQSFEEIKKAFKKFADNIRPEGFGVFCWDNLQVREMLKGYKK 241
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| TIGR_CMR|GSU_3068 GSU_3068 "UDP-N-acetylmuramate--alanine ligase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P17952 murC [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_4218 SO_4218 "UDP-N-acetylmuramate--alanine ligase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_4464 CPS_4464 "UDP-N-acetylmuramate--alanine ligase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SPO_1196 SPO_1196 "UDP-N-acetylmuramate--alanine ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KPG8 murC "UDP-N-acetylmuramate--L-alanine ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_2400 VC_2400 "UDP-N-acetylmuramate--alanine ligase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CBU_0136 CBU_0136 "UDP-N-acetylmuramate--alanine ligase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P65472 murC "UDP-N-acetylmuramate--L-alanine ligase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.3.2.8 | 0.824 |
| 3rd Layer | 6.3.2 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 538 | |||
| PRK00421 | 461 | PRK00421, murC, UDP-N-acetylmuramate--L-alanine li | 1e-146 | |
| COG0773 | 459 | COG0773, MurC, UDP-N-acetylmuramate-alanine ligase | 1e-131 | |
| TIGR01082 | 448 | TIGR01082, murC, UDP-N-acetylmuramate--alanine lig | 1e-109 | |
| PRK14573 | 809 | PRK14573, PRK14573, bifunctional D-alanyl-alanine | 9e-58 | |
| TIGR01081 | 448 | TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamm | 4e-50 | |
| COG0771 | 448 | COG0771, MurD, UDP-N-acetylmuramoylalanine-D-gluta | 3e-16 | |
| TIGR01085 | 464 | TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy | 4e-16 | |
| pfam08245 | 178 | pfam08245, Mur_ligase_M, Mur ligase middle domain | 5e-15 | |
| TIGR01087 | 433 | TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-gl | 1e-14 | |
| PRK00139 | 460 | PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta | 2e-13 | |
| pfam02875 | 88 | pfam02875, Mur_ligase_C, Mur ligase family, glutam | 1e-12 | |
| COG0769 | 475 | COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt | 2e-12 | |
| PRK01710 | 458 | PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 3e-12 | |
| pfam01225 | 79 | pfam01225, Mur_ligase, Mur ligase family, catalyti | 1e-10 | |
| PRK02705 | 459 | PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 1e-10 | |
| PRK14106 | 450 | PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 1e-10 | |
| COG0770 | 451 | COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy | 2e-10 | |
| PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-ac | 5e-10 | |
| TIGR01143 | 417 | TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide-- | 3e-08 | |
| PRK04308 | 445 | PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 2e-07 | |
| PRK01390 | 460 | PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 6e-07 | |
| PRK01368 | 454 | PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 4e-06 | |
| PRK04690 | 468 | PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 3e-05 | |
| PRK11929 | 958 | PRK11929, PRK11929, putative bifunctional UDP-N-ac | 6e-05 | |
| PRK01438 | 480 | PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 3e-04 | |
| PRK02472 | 447 | PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 0.001 | |
| PRK02472 | 447 | PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-gl | 0.002 |
| >gnl|CDD|234757 PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Score = 428 bits (1103), Expect = e-146
Identities = 171/415 (41%), Positives = 241/415 (58%), Gaps = 40/415 (9%)
Query: 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IHFVGIGG G+S LA++ L G++VSGSDL S+ + LLE GA + IGH NI+ D
Sbjct: 10 IHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDAD- 68
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
VV SSAIP DN E++ A+ +G+P+ +R LA+L IAV+G+HGK+TT S
Sbjct: 69 -----VVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTS 123
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
+LA+VL G D T ++G + + G FV EADE D FL L P +A+VTN
Sbjct: 124 LLAHVLAEAGLDPTFLIGGILNAA-GTNARLGNSDYFVAEADESDRSFLKLHPDIAIVTN 182
Query: 258 LDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGV 317
+D +H+D + D + +K F+ F + G LV CGD R LL ++ +
Sbjct: 183 IDADHLDYYGDFEDLKDAFQEFAHNLPFYGALVACGDDPELRELLPRVSR---------- 232
Query: 318 VSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIP 377
+ITYGFS D+ AE++ + GG+ + + RG L +L +P
Sbjct: 233 ---------------PVITYGFSEDADFRAENIRQD-GGGTHFDVLRRGEVLGDFTLPLP 276
Query: 378 GVHNVLNSLAVIATVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDD 437
G HNVLN+LA IA V +G ++ L+ F GV RRF+ G + G + DD
Sbjct: 277 GRHNVLNALAAIA-VALELG------IDDEAIREALATFKGVKRRFEEKGEVGGVVLIDD 329
Query: 438 FAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVVV 492
+AHHPTE++A L+AARQ +P+K ++AVFQPH YSR L D+FA ALS+AD+V++
Sbjct: 330 YAHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTRDLLDEFAEALSDADEVIL 384
|
Length = 461 |
| >gnl|CDD|223844 COG0773, MurC, UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|233264 TIGR01082, murC, UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
| >gnl|CDD|184752 PRK14573, PRK14573, bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|130153 TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase | Back alignment and domain information |
|---|
| >gnl|CDD|223842 COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|219763 pfam08245, Mur_ligase_M, Mur ligase middle domain | Back alignment and domain information |
|---|
| >gnl|CDD|233266 TIGR01087, murD, UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
| >gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217262 pfam02875, Mur_ligase_C, Mur ligase family, glutamate ligase domain | Back alignment and domain information |
|---|
| >gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|179323 PRK01710, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216373 pfam01225, Mur_ligase, Mur ligase family, catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|184511 PRK14106, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
|---|
| >gnl|CDD|167786 PRK04308, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179872 PRK04690, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|179297 PRK01438, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| COG0773 | 459 | MurC UDP-N-acetylmuramate-alanine ligase [Cell env | 100.0 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 100.0 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 100.0 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 100.0 | |
| TIGR01081 | 448 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl | 100.0 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 100.0 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 100.0 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK10773 | 453 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a | 100.0 | |
| PRK14093 | 479 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop | 100.0 | |
| PRK00139 | 460 | murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d | 100.0 | |
| TIGR01143 | 417 | murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a | 100.0 | |
| TIGR01085 | 464 | murE UDP-N-acetylmuramyl-tripeptide synthetase. A | 100.0 | |
| PRK11929 | 958 | putative bifunctional UDP-N-acetylmuramoylalanyl-D | 100.0 | |
| COG0770 | 451 | MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce | 100.0 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK14022 | 481 | UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l | 100.0 | |
| PRK11930 | 822 | putative bifunctional UDP-N-acetylmuramoyl-tripept | 100.0 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 100.0 | |
| PRK11929 | 958 | putative bifunctional UDP-N-acetylmuramoylalanyl-D | 100.0 | |
| COG0769 | 475 | MurE UDP-N-acetylmuramyl tripeptide synthase [Cell | 100.0 | |
| TIGR01499 | 397 | folC folylpolyglutamate synthase/dihydrofolate syn | 100.0 | |
| PLN02913 | 510 | dihydrofolate synthetase | 100.0 | |
| TIGR02068 | 864 | cya_phycin_syn cyanophycin synthetase. Cyanophycin | 100.0 | |
| COG0285 | 427 | FolC Folylpolyglutamate synthase [Coenzyme metabol | 100.0 | |
| PRK10846 | 416 | bifunctional folylpolyglutamate synthase/ dihydrof | 100.0 | |
| PLN02881 | 530 | tetrahydrofolylpolyglutamate synthase | 100.0 | |
| PF08245 | 188 | Mur_ligase_M: Mur ligase middle domain; InterPro: | 99.96 | |
| PRK14016 | 727 | cyanophycin synthetase; Provisional | 99.95 | |
| KOG2525 | 496 | consensus Folylpolyglutamate synthase [Coenzyme tr | 99.95 | |
| PF02875 | 91 | Mur_ligase_C: Mur ligase family, glutamate ligase | 99.52 | |
| PF01225 | 83 | Mur_ligase: Mur ligase family, catalytic domain Th | 97.94 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.51 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.38 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.01 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.97 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 93.96 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 93.45 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 93.31 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 93.16 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 92.91 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 92.91 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 92.77 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 92.73 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 91.96 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 91.57 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 91.48 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 91.42 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 91.31 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 90.71 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 90.63 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.62 | |
| TIGR03172 | 232 | probable selenium-dependent hydroxylase accessory | 90.37 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.22 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 90.04 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 89.92 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 89.77 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.77 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 89.68 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 89.55 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.54 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 89.47 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 89.44 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 89.29 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.1 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 89.05 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 88.85 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.83 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.67 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 88.5 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 88.45 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 88.28 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 88.06 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 87.89 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 87.85 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 87.6 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 87.53 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 87.5 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 87.14 | |
| COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 87.04 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 86.77 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 86.69 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 86.6 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.46 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 86.36 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 86.33 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 86.21 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.1 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 86.04 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 85.98 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 85.87 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.6 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 85.57 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 85.56 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.53 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.49 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 85.43 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 85.36 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.22 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) | 85.0 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 84.94 | |
| COG2403 | 449 | Predicted GTPase [General function prediction only | 84.94 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 84.93 | |
| PLN02712 | 667 | arogenate dehydrogenase | 84.93 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 84.9 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.61 | |
| PF00485 | 194 | PRK: Phosphoribulokinase / Uridine kinase family; | 84.55 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 84.47 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.43 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 84.31 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 84.23 | |
| PRK15453 | 290 | phosphoribulokinase; Provisional | 84.23 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 84.02 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase | 83.86 | |
| PLN02256 | 304 | arogenate dehydrogenase | 83.71 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.53 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron prot | 83.26 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 83.04 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 82.77 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 82.68 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 82.52 | |
| PRK07667 | 193 | uridine kinase; Provisional | 82.48 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 82.43 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.43 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 82.43 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 82.34 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.27 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.26 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 82.19 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthes | 82.11 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.81 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 81.78 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 81.19 | |
| PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 81.08 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.98 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 80.74 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 80.66 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 80.64 | |
| PF07755 | 301 | DUF1611: Protein of unknown function (DUF1611); In | 80.61 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 80.39 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 80.38 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 80.23 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 80.07 |
| >COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-74 Score=590.59 Aligned_cols=402 Identities=44% Similarity=0.658 Sum_probs=371.9
Q ss_pred ceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCCCCCH
Q 009293 76 GWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIPQDNV 155 (538)
Q Consensus 76 ~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~~~~~ 155 (538)
.+||||||||+|||++|++|+.+|++|.|+|.......+.|.++|+.++++++++++. ..+.||+|.+|+++||
T Consensus 8 ~~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~------~~~~VV~s~Ai~~~Np 81 (459)
T COG0773 8 PKIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENIL------DADVVVVSNAIKEDNP 81 (459)
T ss_pred ceEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcC------CCceEEEecccCCCCH
Confidence 3699999999999999999999999999999988888889999999999999988765 5788999999999999
Q ss_pred HHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEEE
Q 009293 156 EILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFV 235 (538)
Q Consensus 156 ~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~V 235 (538)
++.+|+++++|+++++++|+...+....|+|+||+||||||+||+++|.++|++++.++|+.+..++. |...+..+++|
T Consensus 82 Ei~~A~e~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~~~g~-na~~g~~~~fV 160 (459)
T COG0773 82 EIVAALERGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILKNFGT-NARLGSGDYFV 160 (459)
T ss_pred HHHHHHHcCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccccCCc-ccccCCCceEE
Confidence 99999999999999999999998888999999999999999999999999999999999988877764 55566678999
Q ss_pred EeecCcceeeccccCcEEEEcCCCccccccCCCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccC
Q 009293 236 LEADEYDGCFLGLSPSVAVVTNLDWEHVDIFEDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSG 315 (538)
Q Consensus 236 lE~~~~d~~~~~~~p~vaVITNI~~DHld~~gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~ 315 (538)
+|.+|+|..++.++|.++|+|||..||+|+|++++++.+++.+++..++..|.+|+|.|||.++.+....+
T Consensus 161 ~EADEsD~sFl~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~v~~~dd~~l~~l~~~~~--------- 231 (459)
T COG0773 161 AEADESDSSFLHYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRAVVCGDDPNLRELLSRGC--------- 231 (459)
T ss_pred EEecccccccccCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceEEEECCCHHHHHHHhccc---------
Confidence 99999999999999999999999999999999999999999999999999999999999999988776532
Q ss_pred CcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHh
Q 009293 316 GVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTL 395 (538)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~l 395 (538)
..++++||.++++||++.++.... .+..|++...++...++.++++|+||+.|+++|+|+|+.+
T Consensus 232 ---------------~~~v~tyG~~~~ad~~a~ni~~~~-~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia~a~~~ 295 (459)
T COG0773 232 ---------------WSPVVTYGFDDEADWRAENIRQDG-SGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIAVAREL 295 (459)
T ss_pred ---------------CCcEEeecCCCcCcEEEEEeEEec-cccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHHHHHHc
Confidence 257899999866999999998764 4566999888877789999999999999999999999999
Q ss_pred cCCccCCcccHHHHHHHhccCCCCCCceEEEeeeCCeEEEEECCCCHHHHHHHHHHHHhhCCC-CeEEEEEccCCCCchH
Q 009293 396 IGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIYGCHIYDDFAHHPTEVRAVLQAARQRFPN-KALIAVFQPHTYSRLV 474 (538)
Q Consensus 396 gi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~-~r~i~V~g~~~~~r~~ 474 (538)
|++ .+.|+++|++|+|+.+|||+..+.+++++||||||+|+.++++|+++|+.++. +|+++||+||+|+|+.
T Consensus 296 Gi~-------~~~i~~aL~~F~GvkRRfe~~g~~~~~~viDDYaHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySRt~ 368 (459)
T COG0773 296 GID-------PEAIAEALASFQGVKRRFELKGEVNGVTVIDDYAHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSRTR 368 (459)
T ss_pred CCC-------HHHHHHHHHhCCCcceeeEEeeeECCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHhHH
Confidence 998 79999999999999999999998999999999999999999999999999984 8999999999999999
Q ss_pred HHHHHHHHHhccCCEEEEeccCCCC-ccccc-CcHHHHHHHHhh
Q 009293 475 VLKDDFANALSEADQVVVSAVLVFW-LIIFA-VSSFWLIMAINS 516 (538)
Q Consensus 475 ~~~~~~~~~~~~~D~vi~~~~~~~~-~~~~~-~~~~~~~~~~~~ 516 (538)
++.++|+++++.+|.|++++.|+++ +|+++ ++++.+++.+..
T Consensus 369 ~~~~dF~~~l~~AD~v~l~~VY~A~e~~~~g~~~~~~l~~~i~~ 412 (459)
T COG0773 369 DLLDDFAKALSDADEVILLDVYAAGEEPIEGDVSSEDLAEKIRQ 412 (459)
T ss_pred HHHHHHHHHHhcCCEEEEecccccCCCCCcCCccHHHHHHHhhc
Confidence 9999999999999999999999988 57867 999999877664
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | Back alignment and domain information |
|---|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed | Back alignment and domain information |
|---|
| >PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional | Back alignment and domain information |
|---|
| >TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Back alignment and domain information |
|---|
| >TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase | Back alignment and domain information |
|---|
| >PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional | Back alignment and domain information |
|---|
| >PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional | Back alignment and domain information |
|---|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
| >PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional | Back alignment and domain information |
|---|
| >COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase | Back alignment and domain information |
|---|
| >PLN02913 dihydrofolate synthetase | Back alignment and domain information |
|---|
| >TIGR02068 cya_phycin_syn cyanophycin synthetase | Back alignment and domain information |
|---|
| >COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional | Back alignment and domain information |
|---|
| >PLN02881 tetrahydrofolylpolyglutamate synthase | Back alignment and domain information |
|---|
| >PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment | Back alignment and domain information |
|---|
| >PRK14016 cyanophycin synthetase; Provisional | Back alignment and domain information |
|---|
| >KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family | Back alignment and domain information |
|---|
| >PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family | Back alignment and domain information |
|---|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC | Back alignment and domain information |
|---|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
| >COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
| >COG2403 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2 | Back alignment and domain information |
|---|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK15453 phosphoribulokinase; Provisional | Back alignment and domain information |
|---|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
| >PRK07667 uridine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
|---|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins | Back alignment and domain information |
|---|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 538 | ||||
| 1gqq_A | 475 | Murc - Crystal Structure Of The Apo-Enzyme From Hae | 8e-49 | ||
| 4hv4_A | 494 | 2.25 Angstrom Resolution Crystal Structure Of Udp-N | 2e-48 | ||
| 1p31_A | 475 | Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Ala | 4e-43 | ||
| 2f00_A | 491 | Escherichia Coli Murc Length = 491 | 3e-42 | ||
| 1j6u_A | 469 | Crystal Structure Of Udp-N-Acetylmuramate-Alanine L | 2e-29 | ||
| 3hn7_A | 524 | Crystal Structure Of A Murein Peptide Ligase Mpl (P | 1e-27 | ||
| 3eag_A | 326 | The Crystal Structure Of Udp-n-acetylmuramate:l-ala | 2e-16 | ||
| 3lk7_A | 451 | The Crystal Structure Of Udp-N-Acetylmuramoylalanin | 2e-08 | ||
| 3mvn_A | 163 | Crystal Structure Of A Domain From A Putative Udp-N | 8e-08 |
| >pdb|1GQQ|A Chain A, Murc - Crystal Structure Of The Apo-Enzyme From Haemophilus Influenzae Length = 475 | Back alignment and structure |
|
| >pdb|4HV4|A Chain A, 2.25 Angstrom Resolution Crystal Structure Of Udp-N-Acetylmuramate--L- Alanine Ligase (Murc) From Yersinia Pestis Co92 In Complex With Amp Length = 494 | Back alignment and structure |
| >pdb|1P31|A Chain A, Crystal Structure Of Udp-N-Acetylmuramic Acid:l-Alanine Ligase (Murc) From Haemophilus Influenzae Length = 475 | Back alignment and structure |
| >pdb|2F00|A Chain A, Escherichia Coli Murc Length = 491 | Back alignment and structure |
| >pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate-Alanine Ligase Murc (Tm0231) From Thermotoga Maritima At 2.3 A Resolution Length = 469 | Back alignment and structure |
| >pdb|3HN7|A Chain A, Crystal Structure Of A Murein Peptide Ligase Mpl (Psyc_0032) From Psychrobacter Arcticus 273-4 At 1.65 A Resolution Length = 524 | Back alignment and structure |
| >pdb|3EAG|A Chain A, The Crystal Structure Of Udp-n-acetylmuramate:l-alanyl-gamma-d- Glutamyl-meso-diaminopimelate Ligase (mpl) From Neisseria Meningitides Length = 326 | Back alignment and structure |
| >pdb|3LK7|A Chain A, The Crystal Structure Of Udp-N-Acetylmuramoylalanine-D- Glutamate (Murd) Ligase From Streptococcus Agalactiae To 1.5a Length = 451 | Back alignment and structure |
| >pdb|3MVN|A Chain A, Crystal Structure Of A Domain From A Putative Udp-N-Acetylmu Alanyl-Gamma-D-Glutamayl-Medo-Diaminopimelate Ligase From H Ducreyi 35000hp Length = 163 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* Length = 475 | Back alignment and structure |
|---|
Score = 425 bits (1096), Expect = e-145
Identities = 133/421 (31%), Positives = 215/421 (51%), Gaps = 47/421 (11%)
Query: 78 IHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDG 137
IHF+GIGG+G+S +A++ L +G+++SGSD+ + L +AGA ++IGH+ +I+G
Sbjct: 21 IHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEG--- 77
Query: 138 SRFPNAVVASSAIPQDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTAS 197
+ VV SSAI DN E++ +K +P+ +R LA++ + IAV+G+HGK+TT +
Sbjct: 78 ---ASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTA 134
Query: 198 MLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSPSVAVVTN 257
M++ + D T + G V + G + + EADE D FL L P V+VVTN
Sbjct: 135 MISMIYTQAKLDPTFVNGGLVKSA-GKNAHLGASRYLIAEADESDASFLHLQPMVSVVTN 193
Query: 258 LDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGG 316
++ +H+D +E D + +K+ + +FL + G V+C D L+ ++ +
Sbjct: 194 MEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGR--------- 244
Query: 317 VVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQI 376
++ITYGFS D+ E Y + + L +
Sbjct: 245 ----------------QVITYGFSEQADYRIEDYEQT-GFQGHYTVICPNNERINVLLNV 287
Query: 377 PGVHNVLNSLAVIATVLTL-IGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTIY----G 431
PG HN LN+ A +A I + + L+ F G RRFD +G
Sbjct: 288 PGKHNALNATAALAVAKEEGI--------ANEAILEALADFQGAGRRFDQLGEFIRPNGK 339
Query: 432 CHIYDDFAHHPTEVRAVLQAARQRFPNKALIAVFQPHTYSRLVVLKDDFANALSEADQVV 491
+ DD+ HHPTEV ++AAR+ + +K ++ +FQPH YSR L DDF LS+ D ++
Sbjct: 340 VRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRDLFDDFVQVLSQVDALI 399
Query: 492 V 492
+
Sbjct: 400 M 400
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
| >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 Length = 469 | Back alignment and structure |
|---|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Length = 524 | Back alignment and structure |
|---|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} Length = 326 | Back alignment and structure |
|---|
| >3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} Length = 163 | Back alignment and structure |
|---|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} Length = 451 | Back alignment and structure |
|---|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* Length = 439 | Back alignment and structure |
|---|
| >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535 | Back alignment and structure |
|---|
| >1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452 | Back alignment and structure |
|---|
| >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454 | Back alignment and structure |
|---|
| >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* Length = 422 | Back alignment and structure |
|---|
| >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* Length = 487 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 100.0 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 100.0 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 100.0 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 100.0 | |
| 1j6u_A | 469 | UDP-N-acetylmuramate-alanine ligase MURC; structur | 100.0 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 100.0 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 100.0 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 100.0 | |
| 2wtz_A | 535 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di | 100.0 | |
| 1e8c_A | 498 | UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami | 100.0 | |
| 1gg4_A | 452 | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino | 100.0 | |
| 2am1_A | 454 | SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl | 100.0 | |
| 2vos_A | 487 | Folylpolyglutamate synthase protein FOLC; ligase, | 100.0 | |
| 1o5z_A | 442 | Folylpolyglutamate synthase/dihydrofolate synthas; | 100.0 | |
| 1jbw_A | 428 | Folylpolyglutamate synthase; FPGS folate AMPPCP te | 100.0 | |
| 3nrs_A | 437 | Dihydrofolate:folylpolyglutamate synthetase; struc | 100.0 | |
| 1w78_A | 422 | FOLC bifunctional protein; DHFS, dihydrofolate syn | 100.0 | |
| 3mvn_A | 163 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M | 99.65 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 98.67 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 97.72 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.71 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 95.62 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 94.7 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 94.37 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.14 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.76 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 93.74 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.53 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 93.52 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 93.41 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 93.34 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 93.33 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 93.15 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.08 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 93.06 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 92.85 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 92.7 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.32 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 92.25 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 91.85 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 91.76 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.62 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 91.54 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 91.25 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 90.95 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 90.68 | |
| 3fwy_A | 314 | Light-independent protochlorophyllide reductase I | 90.6 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 90.58 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 90.34 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 90.29 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 90.24 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 89.46 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 89.44 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 89.37 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 88.95 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 88.59 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 88.55 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 88.32 | |
| 3of5_A | 228 | Dethiobiotin synthetase; structural genomics, cent | 88.31 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 88.25 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 88.11 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 88.02 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 87.94 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 87.85 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 87.59 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 87.53 | |
| 1byi_A | 224 | Dethiobiotin synthase; biotin synthesis, cyclo-lig | 87.41 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 87.31 | |
| 3fgn_A | 251 | Dethiobiotin synthetase; biotin biosynthesis, BIOD | 87.12 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 87.12 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 86.87 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 86.86 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 86.86 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 86.85 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 86.72 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 86.53 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 86.34 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 86.33 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 86.32 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 86.29 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 86.19 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 86.17 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 85.97 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 85.85 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 85.84 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 85.68 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 85.46 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 85.4 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 85.33 | |
| 2ph1_A | 262 | Nucleotide-binding protein; alpha-beta protein, st | 85.25 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 85.24 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 85.15 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 85.14 | |
| 3qxc_A | 242 | Dethiobiotin synthetase; DTBS, structural genomics | 85.07 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 84.93 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 84.47 | |
| 1g3q_A | 237 | MIND ATPase, cell division inhibitor; alpha-beta-a | 84.1 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 83.95 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 83.85 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 83.76 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 83.59 | |
| 1wcv_1 | 257 | SOJ, segregation protein; ATPase, bacterial, chrom | 83.01 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 82.95 | |
| 3ea0_A | 245 | ATPase, para family; alpha-beta-alpha sandwich, st | 82.61 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 82.4 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 82.35 | |
| 3bfv_A | 271 | CAPA1, CAPB2, membrane protein CAPA1, protein tyro | 82.29 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 82.13 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 81.69 | |
| 3cio_A | 299 | ETK, tyrosine-protein kinase ETK; WZC, escherichia | 81.57 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 81.36 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 81.3 | |
| 3la6_A | 286 | Tyrosine-protein kinase WZC; P-loop protein, nucle | 80.96 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 80.49 | |
| 1hyq_A | 263 | MIND, cell division inhibitor (MIND-1); MINC, FTSZ | 80.47 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 80.24 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 80.21 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 80.03 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 80.01 |
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-69 Score=586.14 Aligned_cols=404 Identities=36% Similarity=0.535 Sum_probs=348.8
Q ss_pred cCCCceEEEEeechhhHHHHHHHHHhCCCcEEEecCCCChhHHHHHHCCCeEEeCCCCCCcCCCCCCCCCCEEEEcCCCC
Q 009293 72 KNRKGWIHFVGIGGSGLSALAKLALKQGFEVSGSDLVWSSYMEGLLEAGANLHIGHSVSNIQGNDGSRFPNAVVASSAIP 151 (538)
Q Consensus 72 ~~~~~~v~vlG~G~sG~~~la~~l~~~G~~v~g~D~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~d~vvvsp~i~ 151 (538)
..+.++|+|||+|+||||++|++|+.+|++|.|+|.+..+..+.+.+.|+.+..+++++.+. .+|+||+|||||
T Consensus 19 ~~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~------~~d~vV~Spgi~ 92 (494)
T 4hv4_A 19 MRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVL------DASVVVVSTAIS 92 (494)
T ss_dssp ---CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGT------TCSEEEECTTSC
T ss_pred hccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcC------CCCEEEECCCCC
Confidence 33446799999999999999999999999999999887777888999999999998776654 589999999999
Q ss_pred CCCHHHHHHHHCCCCeeeHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCC
Q 009293 152 QDNVEILHAKSVGVPIYKRDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGG 231 (538)
Q Consensus 152 ~~~~~l~~a~~~gi~vi~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~ 231 (538)
+++|++++|++.|+||+++.+++.+..+..++|+||||||||||++|++++|+.+|++++..+|+....++. +...+..
T Consensus 93 ~~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~~~g~-~~~~~~~ 171 (494)
T 4hv4_A 93 ADNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVKAAGT-HARLGSS 171 (494)
T ss_dssp TTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTE-EEECCSS
T ss_pred CCCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccccccc-ccccCCC
Confidence 999999999999999999999999887767899999999999999999999999998765556655444432 3334567
Q ss_pred cEEEEeecCcceeeccccCcEEEEcCCCccccccC-CCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcC
Q 009293 232 KNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTG 310 (538)
Q Consensus 232 ~~~VlE~~~~d~~~~~~~p~vaVITNI~~DHld~~-gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~ 310 (538)
+++|+|+++.+..+..++|+++|||||++||+||| +|+|+|+++|.++++.+++++.+|+|.||+....+.+..
T Consensus 172 d~~VlE~~e~~~s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~V~n~dd~~~~~~~~~~----- 246 (494)
T 4hv4_A 172 RYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCIDDPVVRELLPRV----- 246 (494)
T ss_dssp SEEEEECCCGGGGGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEEEEETTSHHHHHHGGGC-----
T ss_pred cEEEEEccccccccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEEEEECCCHHHHHHHHhc-----
Confidence 89999999888766778999999999999999999 799999999999999888889999999999877654321
Q ss_pred ccccCCcccccCcccccCCCCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHH
Q 009293 311 LKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIA 390 (538)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia 390 (538)
..++++||....+|+++.++... .++..|.+...+.....+.++++|.||++|+++|++
T Consensus 247 --------------------~~~~~~~g~~~~~d~~~~~~~~~-~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia 305 (494)
T 4hv4_A 247 --------------------GRHITTYGFSDDADVQIASYRQE-GPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVA 305 (494)
T ss_dssp --------------------CSCEEEEESSTTCSEEEEEEEEE-TTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHH
T ss_pred --------------------CCCEEEEecCCCCceEEEEEEEe-CCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHH
Confidence 14678999877788888877654 245667776555433568999999999999999999
Q ss_pred HHHHhcCCccCCcccHHHHHHHhccCCCCCCceEEEeee---------CCeEEEEECCCCHHHHHHHHHHHHhhCCCCeE
Q 009293 391 TVLTLIGDKRQSHESIACLKLPLSKFMGVSRRFDLIGTI---------YGCHIYDDFAHHPTEVRAVLQAARQRFPNKAL 461 (538)
Q Consensus 391 ~a~~lgi~~~~~~~~~~~I~~~L~~f~~~~gR~E~v~~~---------~g~~ii~D~Ahnp~s~~a~l~~l~~~~~~~r~ 461 (538)
++..+|++ .+.|+++|++|+++|||||++... +++.+|+||||||++++++++++++.++++|+
T Consensus 306 ~a~~lgi~-------~~~i~~~L~~f~g~~~R~e~v~~~~~~~~~~~~~g~~vi~DyaHnp~~i~a~l~al~~~~~~~ri 378 (494)
T 4hv4_A 306 VATEEGIE-------DEDILRALVGFQGTGRRFDFLGNFPLAPVNGKEGSAMLVDDYGHHPTEVDATIKAARAGWPDKRI 378 (494)
T ss_dssp HHHHHTCC-------HHHHHHHHHHCCCBTTSSEEEEEEESHHHHSCSSEEEEEEECCCSHHHHHHHHHHHHHHCTTSEE
T ss_pred HHHHcCCC-------HHHHHHHHHhCCCCCCccEEeeeccccccccCCCCeEEEEeCCCCHHHHHHHHHHHHhhcCCCeE
Confidence 99999997 899999999999999999999764 48999999999999999999999987777799
Q ss_pred EEEEccCCCCchHHHHHHHHHHhccCCEEEEeccCCCCc-ccccCcHHHHHHHHh
Q 009293 462 IAVFQPHTYSRLVVLKDDFANALSEADQVVVSAVLVFWL-IIFAVSSFWLIMAIN 515 (538)
Q Consensus 462 i~V~g~~~~~r~~~~~~~~~~~~~~~D~vi~~~~~~~~~-~~~~~~~~~~~~~~~ 515 (538)
++|||+++|++++++..+++++++.+|.||+++.|++++ |+.+.+.++|.+.+.
T Consensus 379 i~V~g~~~~~r~k~~~~~~~~~~~~aD~vilt~~~~~~e~p~~g~~~~~l~~~~~ 433 (494)
T 4hv4_A 379 VMLFQPHRYTRTRDLYDDFANVLSQVDVLLMLDVYAAGEPPIPGADSRALCRTIR 433 (494)
T ss_dssp EEEECCBCHHHHHHTHHHHHHHHTTSSEEEEECCBCTTCCCCTTCSHHHHHHHHH
T ss_pred EEEEcCCCCCchHHHHHHHHHHHhcCCEEEEeCCcCCccCCcCCccHHHHHHHHH
Confidence 999999988898888889999889999999999998885 668899998887664
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
| >2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* | Back alignment and structure |
|---|
| >1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
| >1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 | Back alignment and structure |
|---|
| >2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* | Back alignment and structure |
|---|
| >2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A* | Back alignment and structure |
|---|
| >1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2 | Back alignment and structure |
|---|
| >1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A | Back alignment and structure |
|---|
| >3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A* | Back alignment and structure |
|---|
| >1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A* | Back alignment and structure |
|---|
| >3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi} | Back alignment and structure |
|---|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
| >3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
| >3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A | Back alignment and structure |
|---|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
| >3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A* | Back alignment and structure |
|---|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
| >2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* | Back alignment and structure |
|---|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
| >3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A | Back alignment and structure |
|---|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* | Back alignment and structure |
|---|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
| >1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* | Back alignment and structure |
|---|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
| >3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* | Back alignment and structure |
|---|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
| >3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
| >3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} | Back alignment and structure |
|---|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
| >1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 538 | ||||
| d1p3da3 | 215 | c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine | 1e-35 | |
| d1j6ua1 | 89 | c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine liga | 7e-24 | |
| d1p3da1 | 96 | c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine li | 3e-21 | |
| d1gg4a4 | 214 | c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl | 1e-15 | |
| d1j6ua3 | 207 | c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine l | 4e-15 | |
| d2jfga1 | 93 | c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D- | 3e-12 | |
| d1e8ca3 | 234 | c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptid | 3e-11 | |
| d2jfga3 | 204 | c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine | 6e-11 | |
| d1j6ua2 | 151 | c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine | 6e-10 | |
| d1p3da2 | 152 | c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine | 3e-09 | |
| d1o5za2 | 296 | c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase | 2e-06 | |
| d2gc6a2 | 296 | c.72.2.2 (A:1-296) Folylpolyglutamate synthetase { | 4e-06 | |
| d1e8ca2 | 160 | c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptid | 1e-05 |
| >d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 215 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Score = 130 bits (327), Expect = 1e-35
Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 28/242 (11%)
Query: 170 RDYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYG 229
R LA++ + IAV+G+HGK+TT +M++ + D T + G V + G
Sbjct: 1 RAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSA-GKNAHLG 59
Query: 230 GGKNFVLEADEYDGCFLGLSPSVAVVTNLDWEHVDIFE-DEDAVKSIFRRFLKQIRVGGH 288
+ + EADE D FL L P V+VVTN++ +H+D +E D + +K+ + +FL + G
Sbjct: 60 ASRYLIAEADESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGL 119
Query: 289 LVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQGHDYKIITYGFSSFNDWYAE 348
V+C D L+ ++ITYGF S Y
Sbjct: 120 AVMCADDPVLMELV-------------------------PKVGRQVITYGF-SEQADYRI 153
Query: 349 SVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIAC 408
Y + + L +PG HN LN+ A +A E++A
Sbjct: 154 EDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALAD 213
Query: 409 LK 410
+
Sbjct: 214 FQ 215
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 89 | Back information, alignment and structure |
|---|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 96 | Back information, alignment and structure |
|---|
| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 214 | Back information, alignment and structure |
|---|
| >d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 207 | Back information, alignment and structure |
|---|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93 | Back information, alignment and structure |
|---|
| >d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 234 | Back information, alignment and structure |
|---|
| >d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 204 | Back information, alignment and structure |
|---|
| >d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} Length = 151 | Back information, alignment and structure |
|---|
| >d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
| >d1o5za2 c.72.2.2 (A:-2-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]} Length = 296 | Back information, alignment and structure |
|---|
| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} Length = 296 | Back information, alignment and structure |
|---|
| >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 160 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 538 | |||
| d1p3da3 | 215 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 100.0 | |
| d1gg4a4 | 214 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 100.0 | |
| d1j6ua3 | 207 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 100.0 | |
| d1e8ca3 | 234 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 100.0 | |
| d2jfga3 | 204 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 99.97 | |
| d2gc6a2 | 296 | Folylpolyglutamate synthetase {Lactobacillus casei | 99.97 | |
| d1o5za2 | 296 | Folylpolyglutamate synthetase {Thermotoga maritima | 99.96 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 99.78 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 99.74 | |
| d1j6ua2 | 151 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 99.7 | |
| d1e8ca2 | 160 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 99.41 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 99.39 | |
| d1o5za1 | 137 | Folylpolyglutamate synthetase, C-terminal domain { | 99.22 | |
| d1p3da2 | 152 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 99.21 | |
| d2gc6a1 | 129 | Folylpolyglutamate synthetase, C-terminal domain { | 98.95 | |
| d1gg4a1 | 135 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 98.86 | |
| d2jfga2 | 140 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 98.07 | |
| d1gg4a3 | 98 | UDP-murNac-tripeptide D-alanyl-D-alanine-adding en | 97.45 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 96.59 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.57 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.51 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.94 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.11 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.99 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 94.67 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 94.64 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.63 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.11 | |
| d1e8ca1 | 101 | UDP-N-acetylmuramyl tripeptide synthetase MurE {Es | 93.33 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 93.24 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.07 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.68 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 92.65 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 92.36 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 92.13 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 91.58 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 91.57 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 90.89 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 90.61 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.08 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 90.0 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 89.97 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.3 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.12 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 88.78 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.64 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 88.53 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 88.43 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 88.34 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 88.32 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 88.3 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 88.16 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 88.06 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 87.86 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 87.79 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.37 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 87.01 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 86.86 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 86.7 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.33 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 86.27 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 86.23 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.2 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 85.74 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 85.62 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 85.57 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 85.3 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 85.08 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 85.03 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 85.01 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 84.9 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 84.88 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 84.87 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 84.85 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 84.74 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 84.46 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 84.09 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.97 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 83.97 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 83.9 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 83.57 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 83.49 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 83.43 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 82.91 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 82.76 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 82.65 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 82.43 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 82.18 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 82.11 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 81.88 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 81.82 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 81.32 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.83 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 80.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 80.78 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 80.7 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 80.64 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 80.29 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 80.21 |
| >d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: MurD-like peptide ligases, catalytic domain family: MurCDEF domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=5.1e-37 Score=293.52 Aligned_cols=213 Identities=29% Similarity=0.426 Sum_probs=175.7
Q ss_pred HHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHHHcCCCeEEEeCCCCCCCCCCccccCCCcEEEEeecCcceeeccccC
Q 009293 171 DYWLAKLTEKYNLIAVSGSHGKSTTASMLAYVLKAMGDDLTAIVGAHVPQFPDGSIFYGGGKNFVLEADEYDGCFLGLSP 250 (538)
Q Consensus 171 ~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~v~~~~g~~~~~~~~~~~~~~~~~~~VlE~~~~d~~~~~~~p 250 (538)
.+++..+.+..++||||||||||||++||+++|+.+|+++....|+....+.. +...+..+++|+|.++++..+.+++|
T Consensus 2 ~e~L~~~~r~~~~I~ITGTnGKTTt~~~l~~iL~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~v~E~~~~~~~~~~~~p 80 (215)
T d1p3da3 2 AQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKSAGK-NAHLGASRYLIAEADESDASFLHLQP 80 (215)
T ss_dssp HHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETTTTE-EEECCSSSEEEEECCCTTSGGGGCCC
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCceEeeCceeccCcc-ccccCCCceEEEEcCCccccceeEcC
Confidence 46677777777899999999999999999999999999987666554444332 33346678999999999988888999
Q ss_pred cEEEEcCCCccccccC-CCHHHHHHHHHHHhhcccCCcEEEEcCCCHHHHHHHHHhhhhcCccccCCcccccCcccccCC
Q 009293 251 SVAVVTNLDWEHVDIF-EDEDAVKSIFRRFLKQIRVGGHLVICGDSQCARSLLDQIKQDTGLKYSGGVVSNQSSDLWGQG 329 (538)
Q Consensus 251 ~vaVITNI~~DHld~~-gs~e~~~~~k~~~~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (538)
|++|||||++||+|+| +++|+|+++|.+++..+++++.+|+|.||+....+.....
T Consensus 81 ~~~viTNi~~dHld~~~~s~e~~~~~K~~i~~~~~~~g~~V~n~dd~~~~~~~~~~~----------------------- 137 (215)
T d1p3da3 81 MVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVG----------------------- 137 (215)
T ss_dssp SEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEEEEETTCHHHHHHHHHHC-----------------------
T ss_pred CEEEEecccccccccccCCHHHHHHHHHHHHhcCCCCCEEEEeCcchHHHHHHHhcC-----------------------
Confidence 9999999999999987 6999999999999999999999999999999887765532
Q ss_pred CCceEEEeeccCCCcceEeeeeecCCCCeEEEEEECCeeeeEEEeCCCchhHHHHHHHHHHHHHHhcCCccCCcccHHHH
Q 009293 330 HDYKIITYGFSSFNDWYAESVCPNVQGGSDYILCERGRPLAQISLQIPGVHNVLNSLAVIATVLTLIGDKRQSHESIACL 409 (538)
Q Consensus 330 ~~~~~~~~g~~~~~d~~~~~i~~~~~~g~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~a~~lgi~~~~~~~~~~~I 409 (538)
.++++||.+...++...++..... +..+.....+....++.++++|+||++|+++|+++|..+|++ +++|
T Consensus 138 --~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~l~G~hn~~N~laAia~a~~lGi~-------~~~i 207 (215)
T d1p3da3 138 --RQVITYGFSEQADYRIEDYEQTGF-QGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIA-------NEAI 207 (215)
T ss_dssp --SEEEEEESSTTCSEEEEEEEEETT-EEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHHHHHTTCC-------HHHH
T ss_pred --CceEEEcccccccccccccccccc-cccccccccccceeeEEeCCCCHHHHHHHHHHHHHHHHcCCC-------HHHH
Confidence 578899988777777766655432 233333334444467899999999999999999999999998 8999
Q ss_pred HHHhccCC
Q 009293 410 KLPLSKFM 417 (538)
Q Consensus 410 ~~~L~~f~ 417 (538)
+++|++|+
T Consensus 208 ~~~L~~Fk 215 (215)
T d1p3da3 208 LEALADFQ 215 (215)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhcC
Confidence 99999986
|
| >d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1e8ca2 c.59.1.1 (A:338-497) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
| >d1gg4a1 c.59.1.1 (A:313-447) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2jfga2 c.59.1.1 (A:298-437) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gg4a3 c.98.1.1 (A:1-98) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
| >d1e8ca1 c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|