Citrus Sinensis ID: 009314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
Protein Sequence
MTIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Secondary Structure (PSIPRED)
cEEEEEcccccccccccEEEEEEEccccccccccEEEccccccEEEcHHHHHHHHHHcccccccccccccccccccccccccccccHHHHccHHHcccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHcccccccHHHccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccccEEEEEEEcccccccccccEEcccccEEEEcHHHHHHHHHcccccEEEEEcccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccccccccccccccEEEEccccccHHHHHHHHcccccccccccccccEEEcccccccHHHcccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHccccccccccccEEcccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHHHccccccccccccccccEcccccccccccccccccccccccccccEccccccccccccccHccccc
Coil and Loop (DISEMBL)
mtiiiekdtpdglppgwtkeikvtktgrkvrrdpyyidpasgyifRSMKDAVRYVEtgeigrlaykpkddgnqdeedleddkdnsptatkkqklevtgtetditsqstklsevakdedaldsagtrecishsehtsgqveagtelrgsnlseakdsdkmdyrkdsdknvlstpvvvvlpqgqssdvgEMMDETMNTtlgksmsrkkkvfdlpRRASKRLaglaldptpelktsnrvrrkqsdkieasstveafcsgsqvhlasqqpdqleakpeancafdtskstevssatseakhpsgdlnassgkietgcksdqpqgcavdltmkhpdnietdieadknpsplidlpfgdllsdpcIAFAIKTLtgetfetssdkevslesnsgksegfaflegqagkkrenegeekqenLATSEEQAANVESKlktdeklenpldlpfadiwrdpCIEFAIKTLTgaipvgndwdvQDYFQQQInssqtqpnnnfcqtEFLCqqfdslekpvsreqartgnlsiqnpggsgfhqqsekrcnech
Flexible Loop (DISEMBL)
mtiiiekdtpdglppgwtkeikvtktgrkvrrdpyyidpasgyifrsMKDAVRYVETGeigrlaykpkddgnqdeedleddkdnsptatkkqklevtgtetditsqstklsevakdeDALDSAGTrecishsehtsgqveagtelrgsnlseakdsdkmdyrkdsdknvlstpvvvvlpqgqssdvgeMMDETMnttlgksmsrkkkvfdlPRRASkrlaglaldptpelktsnrvrrkqsdkiEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSsatseakhpsgdlnassgkiETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTgetfetssdkevslesnsgksegfaflegqagkkrenegeekqenlatseeqAANVEsklktdeklenplDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARtgnlsiqnpggsgfhqqsekrcnech
Low Complexity Region (SEG)
MTIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Disordered region (IsUnstruct)
****************WTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAY************************************************************************************************************VVVV***********************************************************************************************************************************************************************LIDLPFGDLLSDPCIAFAIKTLTGE*******************************************************************LDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQI********NNFCQTEFLCQQF***************************************
Disordered Region (DISOPRED)
*T*****DTPDGLPPGWTKEIKVTK**RKVRRDPYYIDPASGYIFRSMKDAVRYVETGEI***************************************************************************************************************************************************************************************************************************************************************************************************DLLSDPCIAFAIKTLTGE***************************************************************************WRDPCIEFAIKTLTGAIPVGNDWD********************CQTEFL*******************************************
Disordered Region (DISEMBL)
MTIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD******************************************************GTRE*****************LRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKT*****************VEAFCSGSQVHLASQQPDQLEAKPEANCAF***********************ASSGKI*********QGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETF***************KSEGFAFLEGQ******************************KTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLE********RTGNLSIQNP*****************
Disordered Region (DISPRO)
MTIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD*******************************************************************************************************PVVVV****************************KKVFD*PRRASKRLAGLALDPT*******************************************************************************************************************SPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLES****************************************************PLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEK**********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENExxxxxxxxxxxxxxxxxxxxxxxxxxxxENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQDYFQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSGFHQQSEKRCNECH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	537	2.2.26 [Sep-21-2011]
Q9LTJ8	746	Methyl-CpG-binding domain	yes	no	0.135	0.097	0.55	6e-18

>sp|Q9LTJ8|MBD13_ARATH Methyl-CpG-binding domain-containing protein 13 OS=Arabidopsis thaliana GN=MBD13 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 56/80 (70%), Gaps = 7/80 (8%)

Query: 3   IIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 61
           +I+EK    GLP GW K++++T ++GRK RRDP++IDP S YIF+S KDA RYVETG IG
Sbjct: 29  VIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETGNIG 88

Query: 62  RLAYKPKDDGNQDEEDLEDD 81
             A K K      E D+EDD
Sbjct: 89  HYARKLK------ESDIEDD 102

Probable transcriptional regulator.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
255539489	644	conserved hypothetical protein [Ricinus	0.944	0.787	0.444	4e-93
224122408	762	methyl binding domain protein [Populus t	0.797	0.561	0.417	5e-64
359490294	637	PREDICTED: uncharacterized protein LOC10	0.895	0.755	0.332	6e-55
449446179	522	PREDICTED: uncharacterized protein LOC10	0.925	0.952	0.313	6e-48
297741054	560	unnamed protein product [Vitis vinifera]	0.554	0.532	0.379	1e-47
356561673	546	PREDICTED: uncharacterized protein LOC10	0.893	0.879	0.304	2e-37
449520114	487	PREDICTED: uncharacterized protein LOC10	0.782	0.862	0.303	3e-37
224134745	243	methyl binding domain protein [Populus t	0.256	0.567	0.557	5e-33
297742566	1076	unnamed protein product [Vitis vinifera]	0.575	0.287	0.309	2e-28
356527614	1122	PREDICTED: uncharacterized protein LOC10	0.486	0.232	0.315	4e-24

>gi|255539489|ref|XP_002510809.1| conserved hypothetical protein [Ricinus communis] gi|223549924|gb|EEF51411.1| conserved hypothetical protein [Ricinus communis]

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 247/556 (44%), Positives = 325/556 (58%), Gaps = 49/556 (8%)

Query: 3   IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGR 62
            ++EK  P+GLP GWTKEIKVTK G K+RRDPYY DP SGY+FRSMKDA+RY+ETGE+GR
Sbjct: 112 FVVEKSEPEGLPLGWTKEIKVTKRGHKIRRDPYYTDPVSGYVFRSMKDALRYLETGEVGR 171

Query: 63  LAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETD-ITSQSTKLSEVAKDEDALD 121
           LA+KPKD GN D  +LEDDK  +    KKQKL    T T  I++ S+KL EVAKDE A+ 
Sbjct: 172 LAFKPKDTGN-DNVELEDDKTCTSATAKKQKLAANETPTSLISAHSSKLIEVAKDEHAIS 230

Query: 122 SAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQG 181
           SA T E +  SEHTSG    G   + S   E K S +   + D     L+T  V VL   
Sbjct: 231 SASTGESLPISEHTSGHCVLGLPSQNSEAPEGKSSSQTVRKSDLTNGALAT-AVDVLSIE 289

Query: 182 QSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRR--- 238
           Q S+ GEM D  + T  G   S+KKK   LPRRASKRLAGL LDPTPELKT NRVRR   
Sbjct: 290 QPSESGEMKD--VITKAGLGKSKKKKDLSLPRRASKRLAGLPLDPTPELKTINRVRRGAV 347

Query: 239 KQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPS 298
            QS+ I A +   +  +G                 EA  A DTSK+T+    +++ KHP 
Sbjct: 348 GQSNDIAAITDESSSPAGR----------------EAKHASDTSKNTK-RLESNKGKHPI 390

Query: 299 GDLNASSGKIETGCKSDQPQ-----GCAVDLTMK--HPDNIETDIEADKNPSPLIDLPFG 351
           G ++A S +++T  K ++         +  LT K  H  N+ETD  AD+     +DLP G
Sbjct: 391 GHMHAPS-ELKTENKGNEKHEHPTVSPSRSLTFKEEHAGNMETDNNADEKLGVPLDLPLG 449

Query: 352 DLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKK--RENEGEEK 409
           +L  DPCIAFAIKTLTG +FE S   +VS  SN+ +  G + LE  A K+  +  E E++
Sbjct: 450 ELWQDPCIAFAIKTLTGISFENSEGVQVSSGSNNSECGGLSALEDNARKEDLQNREPEKQ 509

Query: 410 QENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDV 469
            ++L+        + +K    EK  +PL++ FAD W DPCI+FAIKTLTGAIP+  D  +
Sbjct: 510 VQHLSNIISHDVEISNK----EKPGSPLNVDFADPWADPCIQFAIKTLTGAIPLACDRVI 565

Query: 470 QDYFQQQINSSQTQPNNNFC--------QTEFLCQQFDSLEKPVSREQAR--TGNLSIQN 519
           QD  QQ+ +SSQ+Q ++           QTE  CQQF    +P   + A      +S+  
Sbjct: 566 QDCLQQKASSSQSQESSGLILQNVGEPDQTEVFCQQFSISPQPSYNQGALPPKKKVSLGY 625

Query: 520 PGGSGFHQQSEKRCNE 535
           P G+ + Q +++R  E
Sbjct: 626 PSGTIYQQHNDERSKE 641

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122408|ref|XP_002318826.1| methyl binding domain protein [Populus trichocarpa] gi|222859499|gb|EEE97046.1| methyl binding domain protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 201/481 (41%), Positives = 256/481 (53%), Gaps = 53/481 (11%)

Query: 83  DNSPTATKKQKLEVTGTETDITS-QSTKLSEVAKDEDALDSAGTRECISHSEHTSGQVEA 141
           D   +  KKQKL V  T + I S QS KL  + KDE  L+SA   EC   S+HTSG V  
Sbjct: 304 DQFVSVIKKQKLAVNRTPSSIISDQSLKLGGIVKDEQILNSASAGECTILSKHTSGGV-- 361

Query: 142 GTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKS 201
           GTE   S   E K S++ + + DS K     P+  VL    S +VGE   E+  T + KS
Sbjct: 362 GTESSSSEFLEDKGSNQTEEKSDSVK--AEDPLQAVLQDKPSVEVGETKKESKKTGVRKS 419

Query: 202 MSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQ---SDKIEASSTVEAFCSGSQ 258
             RKK   +LPRRASKRLAG+ L PTPELK + R RR     S++I AS++ +A C    
Sbjct: 420 --RKKTDLNLPRRASKRLAGIPLAPTPELKAATRARRAALEPSNEIVASTSEQASCGDPD 477

Query: 259 VHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQ 318
             L ++             AFDTSKSTE+   ++E+KH   D+   +GK  +G + D+  
Sbjct: 478 TELNTKH------------AFDTSKSTEIPVDSNESKHAIVDVE-HAGKAGSGKQGDKKH 524

Query: 319 GCAVD------LTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFE 372
              V        T +H   IET    D+      DLP  +L  DPCIAFAIKTLTG + +
Sbjct: 525 QYDVASPPGNLATGEHAGKIETYSTGDEKQGLPFDLPLEELWQDPCIAFAIKTLTGTSVD 584

Query: 373 TSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTDEK 432
            S   +VS  S++ +  G A L+  AGK  E+ G     NL+  EE A  V +  K+DEK
Sbjct: 585 DSDSIKVSPGSSNNEFVGMATLDNHAGK--EDIGNNG--NLSILEEHARAVGTSNKSDEK 640

Query: 433 LENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWD-VQDYFQQQINSSQTQ-------P 484
             +PL LPFAD W DPCIEFAIKTLTGA+P+  D+D VQDY   Q+ SSQ Q       P
Sbjct: 641 PVSPLVLPFADAWSDPCIEFAIKTLTGALPL--DFDMVQDYLPPQVRSSQPQESRGFTLP 698

Query: 485 N-NNFCQTEFLCQQFDSLEKPVSREQARTG---------NLSIQNPGGSGFHQQSEKRCN 534
           N   F QTEFLCQQF + EKP   + A  G         NL      G      SE+R N
Sbjct: 699 NVGEFRQTEFLCQQFGTSEKPSFNQAALVGPALPHTKHVNLGYAAAAGPSRRLHSEERSN 758

Query: 535 E 535
           +
Sbjct: 759 K 759

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490294|ref|XP_002263477.2| PREDICTED: uncharacterized protein LOC100263513 [Vitis vinifera]

 Score =  221 bits (564), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 186/560 (33%), Positives = 260/560 (46%), Gaps = 79/560 (14%)

Query: 3   IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGR 62
           ++ E+ T +GLPPGW KEIK+ K    VRRD YY DP +GYIFRSMKD +RY++TG+ GR
Sbjct: 94  VVFERVTAEGLPPGWIKEIKIQKKCGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTGDPGR 153

Query: 63  LAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDIT-SQSTKLSEVAKDEDALD 121
           LA+KPK   + D  +LEDDK  SP   +KQ+L   G    IT  QS KL ++A DE    
Sbjct: 154 LAFKPKPRDSGD-INLEDDKTYSPVVPRKQELAGGGARRQITRGQSLKLGKIASDEGIPK 212

Query: 122 SAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVL-STPVVVVLPQ 180
           SA +   ++ S                 LSEAK S+ +  + D  KNVL S P+V  L +
Sbjct: 213 SACSGAKVTESSLY--------------LSEAKGSEPIGEKSDDAKNVLDSAPLVEPLAE 258

Query: 181 GQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQ 240
            Q  +    +     T  G    R KK  DLPRRASKRLAGL  D TPELKT+NR  R  
Sbjct: 259 KQPLENRAKVCGKRKTQPGLCNYRNKKSHDLPRRASKRLAGLEADVTPELKTTNRGSRVA 318

Query: 241 SDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGD 300
           +     S  +EA  +              EA+P+  C+F  S+  EV   ++  K P  D
Sbjct: 319 AGH---SGEIEAGIA--------------EAEPKTKCSFQPSQKLEVLLESNSGKTPVED 361

Query: 301 L---NASSGKIETGCKSDQPQGCAVDLTM-------KHPDNIETDIEADKNPSPLIDLPF 350
           L      + K+E   K  +  GC++ L +       +H    E + +   NP P  +LPF
Sbjct: 362 LVPPEEQAEKVEAENKDKEKHGCSLSLPLGDGPIPIEHAGVAEDENKGAGNPEPPHELPF 421

Query: 351 GDLLSDPCIAFAIKTLTGETF--ETSSDKEVS---LESNSGKSEGFAFLEGQAGKKRENE 405
           GD  +DPCI FAIKTLT +    E    +++S    ++N+G + G   L+          
Sbjct: 422 GDSWTDPCIEFAIKTLTSDHLFIEDYFQQQLSSPHAQTNNGSNFGLGNLQ---------- 471

Query: 406 GEEKQENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGN 465
               Q +    +   A   +      +L+ P+   F    +D  + F     TG    G 
Sbjct: 472 ----QTDFPFQQYDVAENPA-----PELQAPVQPTF---LKDGNVNFPSSGETGGYQPGE 519

Query: 466 DWDVQDY-FQQQINSSQTQPNNNFCQTEFLCQQFDSLEKPVSREQA-------RTGNLSI 517
           D          QI++       NF QT+F  Q     + P  + QA       + GN   
Sbjct: 520 DKSKASLKAPAQIDNGLNLGLGNFHQTDFSFQHNVMAQNPAPKPQAPVQPIFQQAGNARF 579

Query: 518 QNPGGSGFHQQSEKRCNECH 537
            + G +G  Q  E +  E  
Sbjct: 580 LSSGQTGLRQPGEDKSKELQ 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446179|ref|XP_004140849.1| PREDICTED: uncharacterized protein LOC101215200 [Cucumis sativus]

 Score =  198 bits (503), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 172/548 (31%), Positives = 270/548 (49%), Gaps = 51/548 (9%)

Query: 4   IIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 63
           ++ +++ D LPPGWT ++KV K+G+K   D  YIDP +G   RS++D  RY+ +G++ RL
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKK---DKSYIDPVNGNALRSIRDVHRYLTSGKVSRL 57

Query: 64  AYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDI--TSQSTKLSEVAKDEDALD 121
            +K ++  + + E  + D+ +SP  +KK+ L +      I  +  +++ SE+   E    
Sbjct: 58  THKSRNQRDNNIE-FQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFP 116

Query: 122 SAGTRECISHS--EHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLP 179
           +A   E +     + + G + A      S  ++AK   + D + D  + VL TP   +  
Sbjct: 117 NASVGETVLFPIPDPSLGGISAKPHC--STPTDAKGLKQSDGKNDISEIVL-TPKEFIQH 173

Query: 180 QGQSSDVGEMMDETMNTTLGKSMSRKKKVFD--LPRRASKRLAGLALDPTPELKTSNRVR 237
           +    +           T G+S  R++K  D  LPRRASKRLAGL  +P  ++KT  R R
Sbjct: 174 KCPIEN---------GATKGESRKRQRKTNDINLPRRASKRLAGLQAEPVLQVKTGRRAR 224

Query: 238 R---KQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEA 294
               ++SDK  AS+T           +A Q P+  + K + N   D SK      +  +A
Sbjct: 225 SVACEESDKQVASTTK---------LVAFQCPENPDVKHKTNSTADPSKINTSPDSGGKA 275

Query: 295 KHPSGDLNASSGKIETGCKSDQPQGCAV----DLTMKHPDNIETDIEAD-KNPSPLIDLP 349
            H   DL+             QP+  +     D+  KH   +E + +A+ K   PL+ LP
Sbjct: 276 -HICVDLSIVMKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLP 334

Query: 350 FGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEK 409
             DLL+DPCIAFA+KTLTG+  + S   + SL  N    + F         +R N G E 
Sbjct: 335 MEDLLTDPCIAFAVKTLTGDVLDASISSDASLTPNH--VDPFTPF---TPNERCNSGPEN 389

Query: 410 Q--ENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDW 467
           +  E +A  E   A V       EKL++ L+LP  +I+ DPCIEFAIKTLTG IP+ N+ 
Sbjct: 390 KLNEKVACPELPVARVGKVENNVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNR 449

Query: 468 DVQDYFQQQINSSQTQPNNNFCQ---TEFLCQQFDSLEKPVSREQARTGNLSIQNPGGSG 524
           D++DYF Q   S   + N N       ++ C+   S ++   +    +  ++ Q   G+G
Sbjct: 450 DIEDYFYQFSTSKTEKTNENASDQPGLDYFCKTNVSQKQQAIQALGASPKINFQT-CGTG 508

Query: 525 FHQQSEKR 532
            H Q   R
Sbjct: 509 LHHQERNR 516

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741054|emb|CBI31785.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/374 (37%), Positives = 186/374 (49%), Gaps = 76/374 (20%)

Query: 3   IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGR 62
           ++ E+ T +GLPPGW KEIK+ K    VRRD YY DP +GYIFRSMKD +RY++TG+ GR
Sbjct: 94  VVFERVTAEGLPPGWIKEIKIQKKCGTVRRDAYYTDPVNGYIFRSMKDTLRYLKTGDPGR 153

Query: 63  LAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDIT-SQSTKLSEVAKDEDALD 121
           LA+KPK   + D  +LEDDK  SP   +KQ+L   G    IT  QS KL ++A DE    
Sbjct: 154 LAFKPKPRDSGD-INLEDDKTYSPVVPRKQELAGGGARRQITRGQSLKLGKIASDEGIPK 212

Query: 122 SAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVL-STPVVVVLPQ 180
           SA +   ++ S                 LSEAK S+ +  + D  KNVL S P+V  L +
Sbjct: 213 SACSGAKVTESSLY--------------LSEAKGSEPIGEKSDDAKNVLDSAPLVEPLAE 258

Query: 181 GQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQ 240
            Q  +    +     T  G    R KK  DLPRRASKRLAGL  D TPELKT+NR     
Sbjct: 259 KQPLENRAKVCGKRKTQPGLCNYRNKKSHDLPRRASKRLAGLEADVTPELKTTNR----- 313

Query: 241 SDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGD 300
                          GS+V  A+    ++EA+ +A                         
Sbjct: 314 ---------------GSRV--AAGHSGEIEAEEQAE------------------------ 332

Query: 301 LNASSGKIETGCKSDQPQGCAVDLTM-------KHPDNIETDIEADKNPSPLIDLPFGDL 353
                 K+E   K  +  GC++ L +       +H    E + +   NP P  +LPFGD 
Sbjct: 333 ------KVEAENKDKEKHGCSLSLPLGDGPIPIEHAGVAEDENKGAGNPEPPHELPFGDS 386

Query: 354 LSDPCIAFAIKTLT 367
            +DPCI FAIKTLT
Sbjct: 387 WTDPCIEFAIKTLT 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561673|ref|XP_003549104.1| PREDICTED: uncharacterized protein LOC100778412 [Glycine max]

 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 175/575 (30%), Positives = 260/575 (45%), Gaps = 95/575 (16%)

Query: 13  LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKDDGN 72
           LPPGWT E++V K G   +RD YY  P+SG  F S  +  RY++  +  +++ +      
Sbjct: 10  LPPGWTVEVRVRKNG---KRDKYYFPPSSGLKFNSKVEVFRYLDNAQ-NKVSIQKISPNV 65

Query: 73  QDEEDLEDDKDNSPTATKKQKLEVTG------TETDIT---------SQSTKLSEVAKDE 117
             E+ + +     P   KK ++   G      T T +T          QS+ +  +A D+
Sbjct: 66  IVEKAIAEGL--PPGWVKKTRITTNGDSVRRDTSTSVTVKPTLSISMGQSSDMDMIANDQ 123

Query: 118 DALDSAGTRECISH--SEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVV 175
               SA + E +S   SE  S Q   G +L  S LS AK SDK    K     V  +  V
Sbjct: 124 QIPRSASSEEYMSVPISECISNQCVVGAKLTSSVLSLAKSSDK----KQGKVGVAQSASV 179

Query: 176 VVLPQGQSSDVGEMMDETMNTTLG---------KSMSRKKKVFDLPRRASKRLAGLALDP 226
                  + +  + + E   T  G         +  ++ KK  +LPRRASKRLAG+ +DP
Sbjct: 180 SGCTNKDAEE--KQLQENSETKHGTEKAQAKDPQCKNKHKKEINLPRRASKRLAGIKVDP 237

Query: 227 TPELKTSNRVRR---KQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSK 283
            PELK  NR RR   KQS++ E  + V+   +     LA Q+ +            DT K
Sbjct: 238 VPELKIRNRARRVAVKQSEEEETITNVDKSANSLLDGLAKQKLNNE----------DTDK 287

Query: 284 STEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPS 343
           + EV  +  E +  S     ++  +E  C      G  VD  + +               
Sbjct: 288 TLEVQRSDKEKECFSFSSLENNATVEE-CVRVIENGDKVDAKLDY--------------- 331

Query: 344 PLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLE---SNSGKSEGFAFLEGQAGK 400
             +D P  +LL+DPCIAFAI+TLTG TFE S D +   E   S   K+   A   G+   
Sbjct: 332 -TLDFPLRELLTDPCIAFAIQTLTGVTFEASKDLQTFSELKNSQHSKTSASAAAIGEGDG 390

Query: 401 KRENEGE-----EKQENLATSEEQAANVESKLKTDEKLENPLDLPFADI--WRDPCIEFA 453
           K+ N+G         ENL+   E A + ++ LK   +   P      D+  W DPCIEFA
Sbjct: 391 KKSNDGLGGNEFSSPENLSIPPEHAGDAKTDLKAKNENAGPSSEKTLDMSSWMDPCIEFA 450

Query: 454 IKTLTGAIPVGN-DWDVQDYFQQQINSSQTQPN---------NNFCQTEFLCQQFDSLEK 503
           IKTLTG IP  + D + ++  QQQ++SS +Q +         +N  +T++ C Q+   +K
Sbjct: 451 IKTLTGTIPSDSADQNPKNCLQQQLSSSNSQHSEMALSSVSLDNIYKTDYSCSQYFDTQK 510

Query: 504 PVSREQA-------RTGNLSIQNPGGSGFHQQSEK 531
           P+  +Q+        T N+ I N  GS      E+
Sbjct: 511 PMFNKQSFVDPSLQHTRNIGIGNSAGSRLSHCGER 545

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520114|ref|XP_004167079.1| PREDICTED: uncharacterized protein LOC101225631 [Cucumis sativus]

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 147/485 (30%), Positives = 229/485 (47%), Gaps = 65/485 (13%)

Query: 4   IIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 63
           ++ +++ D LPPGWT ++KV K+G+K   D  YIDP +G   RS++D  RY+ +G++ RL
Sbjct: 1   MMNQNSKDLLPPGWTVKVKVRKSGKK---DKSYIDPVNGNALRSIRDVHRYLTSGKVSRL 57

Query: 64  AYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDI--TSQSTKLSEVAKDEDALD 121
            +K ++  + + E  + D+ +SP  +KK+ L +      I  +  +++ SE+   E    
Sbjct: 58  THKSRNQRDNNIE-FQHDEISSPVVSKKEVLTIGKARRQIIWSENTSEPSEMVDGEAMFP 116

Query: 122 SAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQG 181
           +A   E +      S       +   S  ++AK  ++ D + D  + VL TP        
Sbjct: 117 NASVGETVLFPIPDSSLGGISAKPHCSTPTDAKGLNQSDGKNDISEIVL-TP-------- 167

Query: 182 QSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRR--- 238
                 E +        G +                   GL  +P  ++KT  R R    
Sbjct: 168 -----KEFIQHKCPIENGAT------------------KGLQAEPVLQVKTGRRARSVAC 204

Query: 239 KQSDKIEASST-VEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHP 297
           ++SDK  AS+T + AF          Q P+  + K + N   D SK      +  +A H 
Sbjct: 205 EESDKQVASTTKLVAF----------QCPENPDVKHKTNSTADPSKINTSPDSGGKA-HI 253

Query: 298 SGDLNASSGKIETGCKSDQPQGCAV----DLTMKHPDNIETDIEAD-KNPSPLIDLPFGD 352
             DL+             QP+  +     D+  KH   +E + +A+ K   PL+ LP  D
Sbjct: 254 CVDLSIVMKMKSADAYEQQPKPESSLPPEDVLEKHVGMVEIEDKANVKKQGPLLKLPMED 313

Query: 353 LLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQ-- 410
           LL+DPCIAFA+KTLTG+  + S   + SL  N    + F         +R N G E +  
Sbjct: 314 LLTDPCIAFAVKTLTGDVLDASISSDASLTPN--HVDPFTPF---TPNERCNSGPENKLN 368

Query: 411 ENLATSEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVGNDWDVQ 470
           E +A  E   A V       EKL++ L+LP  +I+ DPCIEFAIKTLTG IP+ N+ D++
Sbjct: 369 EKVACPELPVARVGKVENNVEKLKSTLELPVGEIFSDPCIEFAIKTLTGEIPLDNNRDIE 428

Query: 471 DYFQQ 475
           DYF Q
Sbjct: 429 DYFYQ 433

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134745|ref|XP_002321896.1| methyl binding domain protein [Populus trichocarpa] gi|222868892|gb|EEF06023.1| methyl binding domain protein [Populus trichocarpa]

 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 97/140 (69%), Gaps = 2/140 (1%)

Query: 3   IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGR 62
           ++IEK  P+GLP GWTKEIKVTK G ++RRDP+Y DP SG +FRSMK+A RY+E+G +GR
Sbjct: 71  VVIEKTVPEGLPLGWTKEIKVTKKGGRIRRDPFYTDPVSGCVFRSMKEAHRYIESGVVGR 130

Query: 63  LAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITS-QSTKLSEVAKDEDALD 121
           LA+K     N   E L+DDK  SP   +KQ LEV  T + +T  QS K  E+AK E  L+
Sbjct: 131 LAFKRNRKDNYVVE-LKDDKTCSPAVAEKQDLEVNETPSPVTGDQSLKACEIAKHEQILN 189

Query: 122 SAGTRECISHSEHTSGQVEA 141
           SA T ECI  SEHTS Q E+
Sbjct: 190 SASTGECIIVSEHTSDQYES 209

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742566|emb|CBI34715.3| unnamed protein product [Vitis vinifera]

 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 167/384 (43%), Gaps = 75/384 (19%)

Query: 3   IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGR 62
           ++IE+ T DGLP GW KEIK+      +RRDPYY DP SGY+FRS KD  RY++TGEI R
Sbjct: 107 VVIERSTADGLPAGWIKEIKIRMNENGIRRDPYYTDPVSGYVFRSRKDVFRYLKTGEISR 166

Query: 63  LAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQ-------STKLSEVAK 115
            A+KPK+      E L +D+ + P   K+QKL    T   + S        S+++S ++ 
Sbjct: 167 HAFKPKNKCINVPE-LPNDEISPPPGAKRQKLMHQKTRRRLFSATASADTGSSEMSNLSL 225

Query: 116 DEDALDSAGTRECISHSEHTSGQVEAGTELRGSNL----SEAKDSDKMDYRKDSDKNVLS 171
            E+     G+R+           +E  TE     L     +  +S K   R++SD     
Sbjct: 226 PEN----QGSRQTKQLFSKPKFALEPPTETLQEKLLVENEKYAESKKSSGRRNSD----- 276

Query: 172 TPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELK 231
                                 +    G     K K  +LP R+SKRLAGL  D      
Sbjct: 277 ----------------------LQKDKGSKRKSKNKDCNLPCRSSKRLAGLKPDLVGNSG 314

Query: 232 TSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSAT 291
           +S +     +DKI   S V          L +    QLE   EA      S++ E  S  
Sbjct: 315 SSEQA-LAVADKISGKSEVIPALGVVMGSLDNTACCQLEVVLEAEPGHHASRAIEAPSDV 373

Query: 292 SEAKHPSGDL------NASSGKIETGCKS-DQPQGCAVDLTMKHPDNIETDIEADKNPSP 344
            ++K  +  L         +GK+ETG K+ D+P+                         P
Sbjct: 374 EQSKKDNRHLEDEAVQEEEAGKLETGKKTGDEPE------------------------LP 409

Query: 345 LIDLPFGDLLSDPCIAFAIKTLTG 368
            +D PF D+ SDPC+ FA KTLTG
Sbjct: 410 PMDFPFMDVWSDPCLEFAFKTLTG 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527614|ref|XP_003532403.1| PREDICTED: uncharacterized protein LOC100807457 [Glycine max]

 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 155/295 (52%), Gaps = 34/295 (11%)

Query: 3   IIIEKDTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGR 62
           +++EK T + LPPGW KE+K+ K  + +R+DP+YIDPASGY+FRS KD +RY+E+G+I  
Sbjct: 238 VVVEKSTVEDLPPGWVKELKIRKNSKGIRKDPFYIDPASGYVFRSKKDVLRYLESGDIRS 297

Query: 63  LAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDS 122
            A+KP     QDE++L       P A K+QKL+ +  E  ++S +  L +   + + LD+
Sbjct: 298 CAFKPSRRQVQDEDNL-----TPPPAAKRQKLKQSAPEQQLSSATEILDK--SNLELLDA 350

Query: 123 AGTRECISHSEHTSGQVEAGTELRGSNLSE-------AKDSDKMDYRKDSDKNVLSTPVV 175
             +R+   ++  +SG + A   + G ++ +       A +S ++    D   + L    +
Sbjct: 351 NSSRKG-KNANVSSGMMVASVPM-GESVEKMHSLEDGAANSSELKKTSDPSSSALLNESL 408

Query: 176 VVLPQGQSSD-------VGEMMDETMNTTLGK-SMSRKKKVFDLPRRASKRLAG-----L 222
               Q  S+D       V  MM+  +       S+S+ +K F++P R+S RLAG     L
Sbjct: 409 KESEQVLSADDVQEKEHVVNMMENAIEKNHSNYSISKNRKEFNVPHRSSPRLAGSKPVQL 468

Query: 223 ALDPTPE--LKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLE-AKPE 274
           A +   E  L+   R  RK  + ++   + +   S  Q H   Q+ D++E  KPE
Sbjct: 469 ANNVMNEQTLQVPKRNLRKSRNTLDIDISEDQTVSKEQPH--QQEADKIEDKKPE 521

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	537
TAIR|locus:2145091	746	MBD13 "methyl-CPG-binding doma	0.607	0.436	0.257	2.9e-28
DICTYBASE|DDB_G0293562	527	DDB_G0293562 [Dictyostelium di	0.649	0.662	0.211	3e-07
FB|FBgn0037836	2743	CG14692 [Drosophila melanogast	0.709	0.138	0.220	7.1e-07
UNIPROTKB|F1PHT7	435	DMP1 "Uncharacterized protein"	0.664	0.820	0.221	2.1e-06
UNIPROTKB|E9PTW3	952	Dspp "Dentin sialophosphoprote	0.664	0.375	0.192	1.4e-05
FB|FBgn0036203	1514	Muc68D "Mucin 68D" [Drosophila	0.659	0.233	0.181	4e-05
POMBASE|SPAC140.02	500	gar2 "nucleolar protein requir	0.396	0.426	0.225	5.6e-05
DICTYBASE|DDB_G0291444	447	DDB_G0291444 [Dictyostelium di	0.370	0.445	0.241	0.00016
FB|FBgn0259108	5495	futsch "futsch" [Drosophila me	0.523	0.051	0.226	0.00023
WB|WBGene00021913	679	cec-8 [Caenorhabditis elegans	0.633	0.500	0.226	0.00023

TAIR|locus:2145091 MBD13 "methyl-CPG-binding domain protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
 Identities = 90/350 (25%), Positives = 155/350 (44%)

Query:     3 IIIEKDTPDGLPPGWTKEIKVT-KTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIG 61
             +I+EK    GLP GW K++++T ++GRK RRDP++IDP S YIF+S KDA RYVETG IG
Sbjct:    29 VIVEKSAAQGLPEGWIKKLEITNRSGRKTRRDPFFIDPKSEYIFQSFKDASRYVETGNIG 88

Query:    62 RLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALD 121
               A K K+    D ED  DD  N  T  + + ++    + D+  +   + +V + +    
Sbjct:    89 HYARKLKES---DIED--DDSGNGKTVLRLEYVDKRSAD-DVLEKEKTIDDVRRSK---- 138

Query:   122 SAGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDS-DKNVLSTPVVVVLPQ 180
                 R  +S S+  S   +  ++L        +D  K +  KD  +K +++  V     Q
Sbjct:   139 ----RRNLSSSDEHSKNCKMTSDLSIVTSQVLEDLGKKEEVKDPIEKQLIAKRVT--RSQ 192

Query:   181 GQSSDVGEMM-DETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRK 239
              ++S   E++ D   N +   + S K  V    R    +   +  +   +  +  R+ R 
Sbjct:   193 TKASTTEEVVVDLKRNLSSSNAKSEKDSVNSSVRSQKPKKEAVMKEEEEQDSSEKRITRS 252

Query:   240 QSD--KIEASSTVEAFCSGSQVHLASQQPDQLE--AKPEANCAFDTSKSTEVSSATSEAK 295
             + +  K E S++V    S     +  +   +L+  AK +     D   + E+ + T   +
Sbjct:   253 KVEEKKNELSNSVARRTSKRLAGIELEPTPELKTRAKVQRIVPLDDEPTPELKTRTKVQR 312

Query:   296 H-PSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSP 344
               P  D      K  T  +   P      L +K    ++  +  D   +P
Sbjct:   313 VVPPDDEPTPELKTRTKIQRIVPPDDEPTLELKTRTKVQRILPPDDELTP 362

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008150 "biological_process" evidence=ND

GO:0008327 "methyl-CpG binding" evidence=ISS

DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)]

 Score = 150 (57.9 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 80/378 (21%), Positives = 162/378 (42%)

Query:    69 DDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQST--KLSEVAKDEDALDSAGTR 126
             ++ N ++  LE++K     A KK+K+E + +    +S S+  +  +  K +  +    T+
Sbjct:    87 NNNNNNKRKLEENKKEE--AKKKKKVESSDSSDSSSSDSSSSESEDEKKKKKEIKKVETK 144

Query:   127 ECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDV 186
             + I   E +       ++    +  + KD+ K++ +K   K V +  V     + +SSD 
Sbjct:   145 KPIKKVESSDSSDSDSSDSSSEDEKKKKDNKKVETKKVETKKVETKKVET--KKEESSD- 201

Query:   187 GEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEA 246
              +  D   +++  +S   KKK  D  +   K+    +     E +  N+  +K   K E 
Sbjct:   202 SDSSDSDSSSSESESEDEKKKK-DTKKVEIKKEESESESSESESEDENKDNKKVGTKKEE 260

Query:   247 SSTVEAFCSGSQVHLASQQPD--QLEAKPE----ANCAFDTSKSTEVSSATSEAKHPSGD 300
             SS  ++  S S+     ++ +  ++EAK E    +    ++  S+  SS++SE++     
Sbjct:   261 SSDSDSSSSESESEDEKKKKNNKKVEAKKEESSDSESESESESSSSSSSSSSESESEDEK 320

Query:   301 LNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIA 360
                 S K+ET  +       + +       +IE  +E  K  S        D  S+    
Sbjct:   321 KKKDSKKVETKKEGSSDSESSSESVEDEKMDIEK-VEIKKEES-------SD--SESSSP 370

Query:   361 FAIKTLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQA 420
              + ++   E  +   ++    ES+S  SE     E +  KK +++ +E  E+    EE +
Sbjct:   371 ASSESKEEEKMDIEKEETKKEESSSSSSESEE--EQKKSKKEDSDSDESSEDEKKKEESS 428

Query:   421 ANVESKLKTDEKLENPLD 438
             ++ ES+   DEK +   D
Sbjct:   429 SSSESE---DEKKKEDSD 443

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0037836 CG14692 [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
 Identities = 92/418 (22%), Positives = 174/418 (41%)

Query:    69 DDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVA---KDEDALD---S 122
             D+ +  E++     D  P++ K++   +  T +     ST L E     K+  +LD   S
Sbjct:  1103 DEKSSSEKEKSTSLDEKPSSEKEKSTSLDETPSSEKENSTSLDEKPSPEKESTSLDEKPS 1162

Query:   123 AGTRECISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQ 182
             +GT +  S  E +S + E  T L     SE + S  ++ R  S+K   ++ V    P+ +
Sbjct:  1163 SGTEKSTSLDEKSSSEKEKSTSLDEKPSSEKEKSTSLNERPSSEKENSTSLVENPSPEKE 1222

Query:   183 SSDVGEMMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSD 242
             S+     +DE  ++   KS S  +     P    ++   L   P+ E + S     K S 
Sbjct:  1223 STS----LDEKPSSGTEKSTSLDEN----PSSEKEKSTSLNERPSSEKENSTSQDEKPSS 1274

Query:   243 KIEASSTVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAKHPSGDLN 302
             + E S++++   S S+   ++    +  ++ E + + D + S+E   +TS  + PS +  
Sbjct:  1275 ETEKSTSLDEKPS-SEKEKSTSLDGKPSSEKEKSTSLDENPSSEKEKSTSLNERPSSEKE 1333

Query:   303 ASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSP-------LIDLPFGDLLS 355
              S+  +E    +  P+  +  L  K     E     D+NPS        L + P  +  +
Sbjct:  1334 NSTSLVE----NPSPEKESTSLDEKPSSGTEKSTSLDENPSSEKEKSTSLNERPSSEKEN 1389

Query:   356 D------PCIAFAIKTLTGETFETSSDK-EVSLESNSGKSEGFAFLEGQAGKKRENEGEE 408
                    P       TL  +  +   D  +VS + +   S+G A +         N+GE 
Sbjct:  1390 STSQDEKPSSEKEKSTLLDKNTDLMRDLIQVSQKVDEEMSKGKAAI-AVVDLPDINKGES 1448

Query:   409 KQENLAT--SEEQAANVESKLKTDEKLENPLDLPFADIWRDPCIEFAIKTLTGAIPVG 464
                 L    S ++  +++++L TD++   P +L       +P  +  I+T T  + VG
Sbjct:  1449 VNSPLEKKPSSQELEDIQAELSTDKETGEPYNLSAEKHKVEPISKKTIET-TDVVDVG 1505

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0032027 "myosin light chain binding" evidence=RCA

UNIPROTKB|F1PHT7 DMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 88/398 (22%), Positives = 167/398 (41%)

Query:    58 GEIGRLAYKPKDDGNQDEEDLEDDK----DNSPTATKKQ--KLEVTGTETDITS-QSTKL 110
             G + R   K  DD + DE+D  DD     DN P   ++Q  K  +   E    S QS + 
Sbjct:     6 GGLSRSGGKEGDDKDDDEDDSGDDTFGDDDNGPGPEERQGGKSRLKSNEDSADSTQSRED 65

Query:   111 SEVAKDEDALDSAGTRECISHSEHTSGQVEAGTELRGSNLSE-------AKDSDKMDYRK 163
             S    ++ A D+      + + +  +   E G  ++ S   E         DS   D  +
Sbjct:    66 SPSLGEDSAQDTTSESRDLDNEDEMNSSPERGDSVQESESKEHWVGGGSEGDSSHGDGSE 125

Query:   164 DSDKNVLST-PVVVVLPQGQS--SDVGEMMDETMNTTLGKSMSRKK---KVFDLPRRASK 217
               D+ + +  P  +   +G S  +      +E+   +  ++ ++     +  + PRR   
Sbjct:   126 FGDEEMQNDDPDTIRNERGNSRMNSASVKSEESKGNSDEQASTQDSGDSQSMEYPRRKIF 185

Query:   218 RLAGLAL-DPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQVHLASQQPDQLEAKPEAN 276
             R + ++  D   EL  SN +   +SD  E +++ E   S S+ +  S+  ++ E   E  
Sbjct:   186 RKSRISEEDDIGELDDSNTMEEVKSDSTENANSKETGLSQSRENSESESVEESE---ENQ 242

Query:   277 CAFDTSKSTEVSSATS-EAKHPSGDLNASSGK-IETGCKSDQPQGCAVDLTMKHPDNIET 334
                D+    + SS +S E   PS + ++ S + + T  + D P     D T  H D  ++
Sbjct:   243 SQEDSQNIQDPSSESSQEVDLPSQENSSESQEEVVTESRGDNP-----DNTTSHSDQEDS 297

Query:   335 DIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDKEVSLESNSGKSEGFAFL 394
             D  +++N    ++ P     S+     A  + + E+  +S +   S E NS   E     
Sbjct:   298 D-SSEENS---LNKPSSSE-SESTEEQA-DSESNESLRSSEESPESTEENSSSQEDLQ-- 349

Query:   395 EGQAGKKRENEGEEKQENLATSEEQAANVE--SKLKTD 430
                A  + ++E  + +++  + E+ A++ +  SKLK D
Sbjct:   350 SHSASAESQSEESQSEQDSQSEEDDASDSQDSSKLKED 387

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0001503 "ossification" evidence=IEA

UNIPROTKB|E9PTW3 Dspp "Dentin sialophosphoprotein" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 70/364 (19%), Positives = 141/364 (38%)

Query:    72 NQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTRECISH 131
             + D  D  D  D+S + +         +++  +S S++ S+ +   D+ DS+ + E  S 
Sbjct:   584 SSDSSDSSDSSDSSDSDSNDSSDSSDSSDSSDSSDSSESSDSSDSSDSSDSSESSES-SE 642

Query:   132 SEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGEMMD 191
             S  +S   ++      S  SE+ DS       DSD +  S+          SSD  +  D
Sbjct:   643 SSDSSDSSDSSDSSDSSESSESSDSSDSSDSSDSDSSD-SSDSSDSSDSSDSSDSSDSSD 701

Query:   192 ETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVE 251
              + ++    S S      D    +    +  + D +    +SN      SD  ++S + +
Sbjct:   702 SSDSSDSSDSDSSDSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSDSSDSSDSSDSSDSSD 761

Query:   252 AFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVS-SATSEAKHPSGDLNASSGKIET 310
             +  S      +S   D  ++   ++ + D+S S++ S S+ S     S D + SS   ++
Sbjct:   762 SSDSSDSSD-SSDSSDSSDSSDSSDSS-DSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS 819

Query:   311 GCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGET 370
                SD     + D +     +  +D     + S   D       SD   +    +  G++
Sbjct:   820 SDSSDSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDGDSSDGDS 879

Query:   371 FETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVESKLKTD 430
               + SD   S  SNS  S+     +  +    +++ + K     +S++ + +      +D
Sbjct:   880 --SDSDSSDSDSSNSSDSDSSDSSDSSSSDSSDSDSDSKDSTSDSSDDDSKSGNGNSDSD 937

Query:   431 EKLE 434
                E
Sbjct:   938 SDSE 941

GO:0071460 "cellular response to cell-matrix adhesion" evidence=IEA

FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)]

 Score = 136 (52.9 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 67/370 (18%), Positives = 141/370 (38%)

Query:    70 DGNQDEEDLEDDKDN-SPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTREC 128
             + +QD    E      SP +T+        + T+ +  ST     +  ED L +  + E 
Sbjct:   534 ESSQDSTTQESSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEA 593

Query:   129 ISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGE 188
              + S  T    ++ T+   S+ +E   S +      ++ +   +       +  SS    
Sbjct:   594 TNESSSTESSQDSTTQ-ESSSSTEGPLSTESSTEGSNESSSTESSQDSTTQKSSSSTESP 652

Query:   189 MMDETMNTTLGKSMSRKKKVFDLPRRASKRLAG-LALDPTPELKTSNRVRRKQSDKIEAS 247
             +  E  +T   +S S +       + +S    G L+ +P+ E   S+     Q    + S
Sbjct:   653 LSTEP-STEANESSSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQES 711

Query:   248 STVEAFCSGSQVHLASQQPDQLEAKPEANCAFDTSKSTEVSSATSEAK---HPSGDLNAS 304
             S      S S+  L+++     EA   ++       +T+ SS+++E+     PS + N S
Sbjct:   712 S------SSSEGPLSTES--STEANESSSTESSQDSTTQESSSSTESPLSTEPSTEANES 763

Query:   305 SGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIK 364
             S    +   + Q    + +  +    + E +  +    S           S+  ++    
Sbjct:   764 SSTESSQDSTTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESS 823

Query:   365 TLTGETFETSSDKEVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANVE 424
             T   E+  T S ++ + + +S  +E     E       E+   E  ++ +T++E +++ E
Sbjct:   824 TEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATYESSSTESSQD-STTQESSSSTE 882

Query:   425 SKLKTDEKLE 434
               L T+   E
Sbjct:   883 GPLSTESSTE 892

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

POMBASE|SPAC140.02 gar2 "nucleolar protein required for rRNA processing" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 129 (50.5 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 51/226 (22%), Positives = 103/226 (45%)

Query:   200 KSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSGSQV 259
             K ++++    D+  + SK+ A  A  P P  K S + ++K   K E+SS  E+  S S+ 
Sbjct:    38 KEIAKQSSKTDVSPKKSKKEAKRASSPEPS-KKSVKKQKKSKKKEESSSESESESSSSES 96

Query:   260 HLASQQPDQLEAKPEANCAFDTSKSTE--VSSATSEAKHPSGDLNASSGKIETGCKSDQP 317
               +S + +   ++ E++ +  +S  +E  V   T E K  S + ++SS       +S++ 
Sbjct:    97 ESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSS-------ESEEE 149

Query:   318 QGCAVDLTMKHPDNIETDIEADKNPSPLIDLPFGDLLSDPCIAFAIKTLTGETFETSSDK 377
             +   V +  K   + ++  E+  + S            +  +    +   G + E+SSD 
Sbjct:   150 EEAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSS-ESSSDS 208

Query:   378 EVSLESNSGKSEGFAFLEGQAGKKRENEGEEKQENLATSEEQAANV 423
             E S +S+S   +  +  + ++    E+E + K E    SEE+ A +
Sbjct:   209 ESSSDSSSESGDSDSSSDSESESSSEDEKKRKAE--PASEERPAKI 252

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0006364 "rRNA processing" evidence=IMP

GO:0007000 "nucleolus organization" evidence=IMP

GO:0042254 "ribosome biogenesis" evidence=IMP

DICTYBASE|DDB_G0291444 DDB_G0291444 [Dictyostelium discoideum (taxid:44689)]

 Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 50/207 (24%), Positives = 88/207 (42%)

Query:    70 DGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSE-VAKDEDALDSAGTREC 128
             D   D  D ED+K+      KK +   + +E+D  S S+  SE   K E   D + + E 
Sbjct:    90 DSESDSSDSEDEKEKEMKVDKKTEDSSSSSESDTESSSSSESEDEKKKEKESDDSSSSES 149

Query:   129 ISHSEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDSDKNVLSTPVVVVLPQGQSSDVGE 188
              S S  +  + E+ +E   S+ SE++D  K +    SD          V    +SSD   
Sbjct:   150 ESDSSSSESESES-SESSSSSESESEDEKKKESSDSSDSESEDEKKKKV----ESSDSSS 204

Query:   189 MMDETMNTTLGKSMSRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRR-KQSDKIEAS 247
                E+ +++  +S   KKK  +    +S      +   +    +S+     ++  K+E S
Sbjct:   205 SESESSDSSDSESEDEKKKKVESSDSSSSESESSSSSSSDSSDSSDSESEDEKKKKVEKS 264

Query:   248 STVEAFCSGSQVHLASQQPDQLEAKPE 274
             S  E   S S+   +  + D+ ++K E
Sbjct:   265 SDKET-SSESESEDSDDEKDKKKSKKE 290

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0259108 futsch "futsch" [Drosophila melanogaster (taxid:7227)]

 Score = 126 (49.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
 Identities = 70/309 (22%), Positives = 130/309 (42%)

Query:    49 KDAVRYVETGEIGRLAYKPKDDGNQDEEDLEDDKDNSPTATKKQKL-EVTGTETDITSQS 107
             K+  R     E   LA K         E ++D+ + S   ++++ + E +   +   S+ 
Sbjct:  3826 KEESRRESVAEKSSLASKKASRPASVAESVKDEAEKSKEESRRESVAEKSPLASKEASRP 3885

Query:   108 TKLSEVAKDE-DALDSAGTRECISH-SEHTSGQVEAGTELRGSNLSEAKDSDKMDYRKDS 165
               ++E  KDE +       RE ++  S   S +    T +  S   EA D  K + R++S
Sbjct:  3886 ASVAESVKDEAEKSKEESRRESVAEKSPLPSKEASRPTSVAESVKDEA-DKSKEESRRES 3944

Query:   166 DKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGKSMSRKKKVFD---LPRRASKRLAGL 222
                   +P+  +     +S    + DET  +   K  SR++ V +   LP + + R   +
Sbjct:  3945 GAE--KSPLASMEASRPTSVAESVKDETEKS---KEESRRESVTEKSPLPSKEASRPTSV 3999

Query:   223 ALDPTPELKTSNRVRRKQS--DKI-----EASSTVEAFCSGSQVHLASQQPDQLEAKPEA 275
             A     E + S    R++S  +K      E+S       S       ++Q  + E+ PE+
Sbjct:  4000 AESVKDEAEKSKEESRRESVAEKSPLASKESSRPASVAESIKDEAEGTKQESRRESMPES 4059

Query:   276 NCAFDTSKSTEVSSATSEAKHPSGDLNASSGKIETGCKSDQPQGCAVDLTM--KHPDNIE 333
               A ++ K  + S A+ E   P  D    S K ET    ++P+G A+D +     P+++ 
Sbjct:  4060 GKA-ESIKGDQSSLASKETSRP--DSVVESVKDET----EKPEGSAIDKSQVASRPESVA 4112

Query:   334 TDIEADKNP 342
                + +K+P
Sbjct:  4113 VSAKDEKSP 4121

GO:0008017 "microtubule binding" evidence=ISS;IDA

GO:0005875 "microtubule associated complex" evidence=ISS;IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0007017 "microtubule-based process" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048749 "compound eye development" evidence=NAS

GO:0007399 "nervous system development" evidence=NAS

GO:0007528 "neuromuscular junction development" evidence=NAS

GO:0005874 "microtubule" evidence=IEA

GO:0008088 "axon cargo transport" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0060052 "neurofilament cytoskeleton organization" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

WB|WBGene00021913 cec-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 125 (49.1 bits), Expect = 0.00023, P = 0.00023
 Identities = 87/384 (22%), Positives = 162/384 (42%)

Query:    69 DDGNQDEEDLEDDKDNSPTATKKQKLEVTGTETDITSQSTKLSEVAKDEDALDSAGTREC 128
             D  ++DEE+ +  K  S    KK K E +  E   +    ++ EV K+  +      +  
Sbjct:   307 DSSSEDEEEEKSSKKRS----KKSKKE-SDEEQQASDSEEEVVEVKKNSKSPKKTPKKTA 361

Query:   129 ISH-SEHTSG--QVEAGTELRGSNLSEAK----DSDKMDYRKDSDKNVLSTPVVVVLPQG 181
             +   SE +SG  + E   + + S +++ K     SD+ +  ++S K    +P        
Sbjct:   362 VKEESEESSGDEEEEVVKKKKSSKINKRKAKESSSDEEEEVEESPKKKTKSPRK---SSK 418

Query:   182 QSSDVGEMMDETMNTTLGKSM--SRKKKVFDLPRRASKRLAGLALDPTPELKTSNRVRRK 239
             +S+   E  +E+ +    + +  S KKKV   P+++SK+ A       P          +
Sbjct:   419 KSAAKEESEEESSDNEEEEEVDYSPKKKVKS-PKKSSKKPAAKVESEEPSDNEEEEEEVE 477

Query:   240 QSDKIEASSTVEAFCSGSQVHLAS------QQPDQLEAKPEANCAFDTSKSTEVSSATSE 293
             +S  I+   T   +   S   + S      ++ +++E  P+        KS++ S+A  E
Sbjct:   478 ESP-IKKDKTPRKYSRKSAAKVESTESSGNEEEEEVEESPKKK-GKTPRKSSKKSAAVEE 535

Query:   294 AKHPSGDLNASSGKIETGCKSDQPQGCAVDLTMKHPDNIETDIEAD--KNPSPLIDLPFG 351
             + +   D+  S  K  +  KS + +  A + + +  DN   ++E    KN   L   P  
Sbjct:   536 SDNEEEDVEESPKKRTSPRKSSKKRA-AKEESEESSDNEVEEVEDSPKKNDKTLRKSP-- 592

Query:   352 DLLSDPCIAFAIKTLTGETFETSSDKEVSLES--NSGKSEGFAFLEGQAGKKRENEGEEK 409
                  P    A K  + E+F    ++EV  ES    GK+   +  +  A ++ E   +++
Sbjct:   593 ---RKP----AAKVESEESFGNEEEEEVE-ESPKKKGKTPRKSSKKSAAKEESEESSDDE 644

Query:   410 QENLATSEEQAANVES--KLKTDE 431
             +E  A  E   ++ ES  K KTDE
Sbjct:   645 EEEQA-EETNGSHTESPTKSKTDE 667

GO:0005634 "nucleus" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MBD912 methyl binding domain protein (763 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	537
cd01396	77	cd01396, MeCP2_MBD, MeCP2, MBD1, MBD2, MBD3, and M	3e-09
cd00122	62	cd00122, MBD, MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8	4e-09
smart00391	77	smart00391, MBD, Methyl-CpG binding domain	2e-05
pfam01429	75	pfam01429, MBD, Methyl-CpG binding domain	2e-05

>gnl|CDD|238690 cd01396, MeCP2_MBD, MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 13 LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRLAYKPKD 69
          LPPGW +E+   K+G   + D YYI P +G  FRS  +  RY+E  + G  +    D
Sbjct: 7  LPPGWKRELVPRKSGSAGKFDVYYISP-TGKKFRSKVELARYLE--KNGPTSLDLSD 60

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. Length = 77

>gnl|CDD|238069 cd00122, MBD, MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETGEIGRL 63
          D LPPGW +E+ + K+G   + D YY  P  G   RS  +  RY+E      L
Sbjct: 4  DPLPPGWKRELVIRKSGSAGKGDVYYYSP-CGKKLRSKPEVARYLEKTGPSSL 55

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family. Length = 62

>gnl|CDD|128673 smart00391, MBD, Methyl-CpG binding domain

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 13 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 57
          LP GW +E K  K+GR   + D YYI P  G   RS  +  RY+  
Sbjct: 8  LPCGWRRETKQRKSGRSAGKFDVYYISP-CGKKLRSKSELARYLHK 52

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain. Length = 77

>gnl|CDD|216497 pfam01429, MBD, Methyl-CpG binding domain

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 13 LPPGWTKEIKVTKTGRKVRR-DPYYIDPASGYIFRSMKDAVRYVE 56
          LPPGW +E +  K+G    + D YY  P +G  FRS  + +RY+E
Sbjct: 10 LPPGWRREERQRKSGSSAGKVDVYYYSP-TGKKFRSKSELIRYLE 53

The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	537
cd01396	77	MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me	99.36
PF01429	77	MBD: Methyl-CpG binding domain; InterPro: IPR00173	99.35
cd00122	62	MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and	99.27
smart00391	77	MBD Methyl-CpG binding domain. Methyl-CpG binding	99.0
cd01397	73	HAT_MBD Methyl-CpG binding domains (MBD) present i	98.85
KOG4161	272	consensus Methyl-CpG binding transcription regulat	98.21
cd01395	60	HMT_MBD Methyl-CpG binding domains (MBD) present i	96.99
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	83.48

>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD)

Probab=99.36  E-value=6.1e-13  Score=110.26  Aligned_cols=46  Identities=43%  Similarity=0.845  Sum_probs=43.3

Q ss_pred             CCCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314           12 GLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETG   58 (537)
Q Consensus        12 ~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeTG   58 (537)
                      +||+||.+|+++|++|+.++.|.||++| +|++|||++||.+||+..
T Consensus         6 ~lp~GW~r~~~~R~~gs~~k~DvyY~sP-~Gkk~RS~~ev~~yL~~~   51 (77)
T cd01396           6 RLPPGWKRELVPRKSGSAGKFDVYYISP-TGKKFRSKVELARYLEKN   51 (77)
T ss_pred             CCCCCCEEEEEEecCCCCCcceEEEECC-CCCEEECHHHHHHHHHhC
Confidence            5999999999999999778999999999 699999999999999874

The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.

>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer

Probab=99.35  E-value=6.3e-13  Score=108.86  Aligned_cols=50  Identities=40%  Similarity=0.777  Sum_probs=44.6

Q ss_pred             CCCCCCCCceeEEEEcCCCC-CccccccccCCCCCceeccHHHHHHHHHhCc
Q 009314            9 TPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETGE   59 (537)
Q Consensus         9 ~p~~LPdGWikEi~~RksGs-~~r~DkYY~dPvSGykFRSkkeV~rYLeTG~   59 (537)
                      ...+||+||.+|+++|++|. .++.|.||++| +|++|||++||.+||+.+.
T Consensus         7 ~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP-~Gk~~RS~~eV~~yL~~~~   57 (77)
T PF01429_consen    7 LDPPLPDGWKREVVVRKSGSSAGKKDVYYYSP-CGKRFRSKKEVVRYLKENP   57 (77)
T ss_dssp             EBTTSTTT-EEEEEESSSSTTTTSEEEEEEET-TSEEESSHHHHHHHHTTSS
T ss_pred             ccCCCCCCCEEEEEEecCCCcCCceEEEEECC-CCCEEeCHHHHHHHHHhCC
Confidence            34599999999999999984 48999999999 8999999999999998775

Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.

>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD)

Probab=99.27  E-value=4.1e-12  Score=100.37  Aligned_cols=47  Identities=40%  Similarity=0.834  Sum_probs=43.8

Q ss_pred             CCCCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314           11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVETG   58 (537)
Q Consensus        11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeTG   58 (537)
                      .+||.||.+|+++|++|+.++.|.||++| +|++|||+.||++||...
T Consensus         4 ~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP-~Gk~~Rs~~ev~~yL~~~   50 (62)
T cd00122           4 DPLPPGWKRELVIRKSGSAGKGDVYYYSP-CGKKLRSKPEVARYLEKT   50 (62)
T ss_pred             CCCCCCeEEEEEEcCCCCCCcceEEEECC-CCceecCHHHHHHHHHhC
Confidence            47899999999999999778999999999 699999999999999865

The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.

>smart00391 MBD Methyl-CpG binding domain

Probab=99.00  E-value=3.8e-10  Score=93.65  Aligned_cols=45  Identities=40%  Similarity=0.746  Sum_probs=41.9

Q ss_pred             CCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314           13 LPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETG   58 (537)
Q Consensus        13 LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG   58 (537)
                      ||.||.+++++|+.| +.++.|.||++| +|++|||+.||.+||..-
T Consensus         8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP-~GkklRs~~ev~~YL~~~   53 (77)
T smart00391        8 LPCGWRRETKQRKSGRSAGKFDVYYISP-CGKKLRSKSELARYLHKN   53 (77)
T ss_pred             CCCCcEEEEEEecCCCCCCcccEEEECC-CCCeeeCHHHHHHHHHhC
Confidence            999999999999998 567999999999 899999999999999753

Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain

>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity

Probab=98.85  E-value=3e-09  Score=88.63  Aligned_cols=57  Identities=19%  Similarity=0.482  Sum_probs=47.4

Q ss_pred             CCCCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHh---CccCceeeccC
Q 009314           11 DGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVET---GEIGRLAYKPK   68 (537)
Q Consensus        11 ~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeT---G~i~~~a~~P~   68 (537)
                      -.||-||..|+++|..|++++.|.||+.| +|++|||++||.+||..   ..+.+..|...
T Consensus         4 ~Pl~~GW~Re~vir~~~~~~~~dV~Y~aP-cGKklRs~~ev~~yL~~~~~~~Lt~dnFsF~   63 (73)
T cd01397           4 VPLELGWRRETRIRGLGGRIQGEVAYYAP-CGKKLRQYPEVIKYLSKNGISLLSRENFSFS   63 (73)
T ss_pred             CCCCCCceeEEEeccCCCCccceEEEECC-CCcccccHHHHHHHHHhCCccCccHhHcccc
Confidence            36899999999999999888999999999 79999999999999984   23444444433

The Drosophila melanogaster toutatis protein, a putative subunit of the chromatin-remodeling complex, and other such proteins in this group share a similar domain architecture with BAZ2A, as does the Caenorhabditis elegans flectin homolog.

>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics]

Probab=98.21  E-value=4.8e-07  Score=90.20  Aligned_cols=48  Identities=42%  Similarity=0.713  Sum_probs=43.7

Q ss_pred             CCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhCcc
Q 009314           12 GLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETGEI   60 (537)
Q Consensus        12 ~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG~i   60 (537)
                      .||+||.++++.|++| +.++.|.||++| +|++|||+.+..+||+.-..
T Consensus        18 ~lp~GW~~~~~~r~~~~~~g~~dv~~~sp-~g~~frsk~~l~~~~~~~~~   66 (272)
T KOG4161|consen   18 ALPPGWTREEVQRSSGLSAGKSDVYYISP-SGKKFRSKPQLARYLGKVGD   66 (272)
T ss_pred             CCCCCcchhhhcccCCCcccccceEEeCC-cccccccccHHHHHhccccc
Confidence            7999999999999998 568999999999 79999999999999975443

>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression

Probab=96.99  E-value=0.00066  Score=55.19  Aligned_cols=43  Identities=28%  Similarity=0.517  Sum_probs=37.4

Q ss_pred             CCCCceeEEEEcCCCCCccccccccCCCCCceeccHHHHHHHHHh
Q 009314           13 LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYIFRSMKDAVRYVET   57 (537)
Q Consensus        13 LPdGWikEi~~RksGs~~r~DkYY~dPvSGykFRSkkeV~rYLeT   57 (537)
                      |==||......|+.| +.+.|.+|..| +|++.|++.||++||..
T Consensus         6 ll~gw~R~~~~~~~~-~~k~~V~Y~aP-CGr~Lr~~~EV~~YL~~   48 (60)
T cd01395           6 LLCGFQRMKYRARVG-KVKKHVIYKAP-CGRSLRNMSEVHRYLRE   48 (60)
T ss_pred             cccCeEEEEEeccCC-CcccceEEECC-cchhhhcHHHHHHHHHh
Confidence            335999999888877 45789999999 79999999999999974

SETDB1 and other proteins in this group have a similar domain architecture. SETDB1 is a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins.

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=83.48  E-value=0.67  Score=32.54  Aligned_cols=26  Identities=38%  Similarity=0.937  Sum_probs=17.7

Q ss_pred             CCCCceeEEEEcCCCCCccccccccCCCCCce
Q 009314           13 LPPGWTKEIKVTKTGRKVRRDPYYIDPASGYI   44 (537)
Q Consensus        13 LPdGWikEi~~RksGs~~r~DkYY~dPvSGyk   44 (537)
                      ||+||.+-.... +|     ..||++..+|..
T Consensus         1 LP~gW~~~~~~~-~g-----~~YY~N~~t~~s   26 (31)
T PF00397_consen    1 LPPGWEEYFDPD-SG-----RPYYYNHETGES   26 (31)
T ss_dssp             SSTTEEEEEETT-TS-----EEEEEETTTTEE
T ss_pred             CCcCCEEEEcCC-CC-----CEEEEeCCCCCE
Confidence            899997332212 34     689999988753

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	537
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	7e-08
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	3e-06
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	6e-06
1ub1_A	133	MECP2, attachment region binding protein; chicken	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus} Length = 72

 Score = 48.8 bits (116), Expect = 7e-08
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 6  EKDTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG 58
           +     LPPGW KE  + K+G    + D YY  P SG  FRS     RY+   
Sbjct: 6  GRTDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGNA 58

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A Length = 97

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 13 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET 57
          LP GWT+++K  K+GR   + D Y I+P  G  FRS  + + Y E 
Sbjct: 24 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK 68

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A* Length = 75

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 5  IEKDTPD--GLPPGWTKEIKVTKTGRKV-RRDPYYIDPASGYIFRSMKDAVRYVE 56
          + +D  D   L PGW +     K+G    R D YY  P +G   RS  +  RY+ 
Sbjct: 1  MAEDWLDCPALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLG 54

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3 Length = 133

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 13 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVE 56
          LP GWT+++K  K+GR   + D Y I+P  G  FRS  + + Y E
Sbjct: 38 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 25/135 (18%)

Query: 149 NLSEAKDSDKMDY--------RKDSDKNVLSTPVVVVLPQGQSSDVGEMMDETMNTTLGK 200
           N+  AK  +  +         R     + LS      +     S      DE   + L K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVK-SLLLK 309

Query: 201 SMSRKKKVFDLPRRASK----RLAGLALDPTPELKTSNRVRRKQSDKIEASSTVEAFCSG 256
            +    +  DLPR        RL+ +A      L T +  +    DK+  ++ +E+    
Sbjct: 310 YLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESS--- 362

Query: 257 SQVHLASQQPDQLEA 271
               L   +P +   
Sbjct: 363 ----LNVLEPAEYRK 373

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	537
1d9n_A	75	Methyl-CPG-binding protein MBD1; PCM1, methylation	99.32
2ky8_A	72	Methyl-CPG-binding domain protein 2; DNA binding d	99.31
3c2i_A	97	Methyl-CPG-binding protein 2; water mediated recog	99.3
3vxv_A	69	Methyl-CPG-binding domain protein 4; methyl CPG bi	99.27
1ub1_A	133	MECP2, attachment region binding protein; chicken	99.12
1ymz_A	43	CC45; artificial protein, computational design, un	81.0
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	80.2

>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*

Probab=99.32  E-value=4.9e-13  Score=109.84  Aligned_cols=46  Identities=35%  Similarity=0.637  Sum_probs=42.6

Q ss_pred             CCCCCCceeEEEEcCCCC-CccccccccCCCCCceeccHHHHHHHHHh
Q 009314           11 DGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVET   57 (537)
Q Consensus        11 ~~LPdGWikEi~~RksGs-~~r~DkYY~dPvSGykFRSkkeV~rYLeT   57 (537)
                      ..||+||.+|+++|++|. .++.|.||++| +|++|||++||.+||+.
T Consensus         9 p~LP~GW~Re~~~R~~g~s~gk~DvyY~sP-~Gkk~RS~~ev~ryL~~   55 (75)
T 1d9n_A            9 PALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP   55 (75)
T ss_dssp             TTTCSSCEEEECSSSSSCTTCCCCEEEECS-SSCEECSTHHHHHHHCT
T ss_pred             CCCCCCCEEEEEEecCCCCCCceEEEEECC-CCCeeecHHHHHHHhcc
Confidence            489999999999999984 47999999999 89999999999999964

>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}

Probab=99.31  E-value=9.7e-13  Score=107.07  Aligned_cols=46  Identities=43%  Similarity=0.827  Sum_probs=43.1

Q ss_pred             CCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314           12 GLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETG   58 (537)
Q Consensus        12 ~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG   58 (537)
                      +||+||.+|+++|++| +.++.|.||++| +|++|||++||.+||+.+
T Consensus        12 ~Lp~GW~R~~~~R~~g~s~~k~DvyY~sP-~Gkr~RS~~ev~~YL~~~   58 (72)
T 2ky8_A           12 ALPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYLGNA   58 (72)
T ss_dssp             SSCTTCEEEEEECCSSTTTTCEEEEEECT-TCCEEESHHHHHHHHTTS
T ss_pred             CCCCCCEEEEEEecCCCCCCceEEEEECC-CCCEeEcHHHHHHHHhcC
Confidence            8999999999999988 468999999999 899999999999999773

>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A

Probab=99.30  E-value=1.5e-12  Score=111.85  Aligned_cols=46  Identities=39%  Similarity=0.745  Sum_probs=42.7

Q ss_pred             CCCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHh
Q 009314           11 DGLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVET   57 (537)
Q Consensus        11 ~~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeT   57 (537)
                      .+||+||.+|+++|++| +.++.|.||++| +|++|||++||.+||+.
T Consensus        22 ~~lP~GW~re~~~R~~G~s~gk~DvYY~sP-~GkkfRSk~ev~ryL~~   68 (97)
T 3c2i_A           22 PTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIMYFEK   68 (97)
T ss_dssp             TTSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEEecCCCCCCcceEEEECC-CCCEEECHHHHHHHHHH
Confidence            37999999999999998 457999999999 89999999999999974

>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*

Probab=99.27  E-value=2.7e-12  Score=103.87  Aligned_cols=47  Identities=30%  Similarity=0.622  Sum_probs=43.1

Q ss_pred             CCCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314           11 DGLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETG   58 (537)
Q Consensus        11 ~~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG   58 (537)
                      ..||+||.+|+++|++| +.++.|.||++| +|++|||++||.+||+..
T Consensus         4 ~plp~GW~R~~~~R~~G~s~gk~DvyY~sP-~Gkk~RSk~ev~~yL~~~   51 (69)
T 3vxv_A            4 KPVPCGWERVVKQRLSGKTAGKFDVYFISP-QGLKFRSKRSLANYLLKN   51 (69)
T ss_dssp             CCSCTTCEEEEEECCSSTTTTCEEEEEECT-TSCEECSHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEEEeccCCCCCcceEEEEcC-CCCEeeCHHHHHHHHHhC
Confidence            47999999999999998 467899999999 599999999999999864

>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3

Probab=99.12  E-value=2.6e-11  Score=109.19  Aligned_cols=46  Identities=39%  Similarity=0.753  Sum_probs=42.8

Q ss_pred             CCCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHh
Q 009314           11 DGLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVET   57 (537)
Q Consensus        11 ~~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeT   57 (537)
                      .+||+||.+|+++|++| +.++.|.|||+| +|++|||+.||.+||+.
T Consensus        36 ~~LP~GWkRe~~~RksG~Sagk~DVYY~SP-~GKkfRSk~Ev~ryL~~   82 (133)
T 1ub1_A           36 PTLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEK   82 (133)
T ss_dssp             CCBTTBCEEEEEECCCSSSCCSEEEEEECT-TSCEESSHHHHHHHHTT
T ss_pred             CCCCCCCEEEEEEecCCCCCCceeEEEECC-CCCeeeCHHHHHHHHHH
Confidence            48999999999999998 568999999999 69999999999999974

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=81.00  E-value=0.9  Score=32.71  Aligned_cols=29  Identities=28%  Similarity=0.618  Sum_probs=18.5

Q ss_pred             cCCCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314            8 DTPDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY   43 (537)
Q Consensus         8 ~~p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy   43 (537)
                      +.+..||+||....-  .+|     ..||++-.++.
T Consensus         4 e~~~~LP~gW~~~~~--~~G-----r~YY~n~~T~~   32 (43)
T 1ymz_A            4 GRSMPLPPGWERRTD--VEG-----KVYYFNVRTLT   32 (43)
T ss_dssp             ---CCCCSSEEEEEC--TTS-----CEEEEETTTTE
T ss_pred             ccCCCCCCCCEEEEC--CCC-----CEEEEECCCCC
Confidence            356789999965432  344     57999887764

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=80.20  E-value=1.1  Score=32.09  Aligned_cols=27  Identities=33%  Similarity=0.714  Sum_probs=18.2

Q ss_pred             CCCCCCCceeEEEEcCCCCCccccccccCCCCCc
Q 009314           10 PDGLPPGWTKEIKVTKTGRKVRRDPYYIDPASGY   43 (537)
Q Consensus        10 p~~LPdGWikEi~~RksGs~~r~DkYY~dPvSGy   43 (537)
                      ...||+||.+.  ...+|     ..||++-.++.
T Consensus         5 ~~~LP~gWe~~--~~~~G-----r~Yy~nh~t~~   31 (40)
T 2ysg_A            5 SSGLPYGWEEA--YTADG-----IKYFINHVTQT   31 (40)
T ss_dssp             SSCCCTTEEEE--ECSSS-----CEEEEESSSCC
T ss_pred             cCCCCCCcEEE--EcCCC-----CEEEEECCCCc
Confidence            35799999444  44444     57999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	537
d1ig4a_	75	d.10.1.3 (A:) Methylation-dependent transcriptiona	8e-10
d1qk9a_	92	d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2	4e-08

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 8e-10
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 6  EKDTPDGLPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVETG 58
            D P  L PGW +     K+G    R D YY  P +G   RS  +  RY+   
Sbjct: 5  WLDCPA-LGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGPA 56

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 13 LPPGWTKEIKVTKTGR-KVRRDPYYIDPASGYIFRSMKDAVRYVE 56
          LP GWT+++K  K+GR   + D Y I+P  G  FRS  + + Y E
Sbjct: 24 LPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFE 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	537
d1ig4a_	75	Methylation-dependent transcriptional repressor MB	99.38
d1qk9a_	92	Methyl-CpG-binding protein 2, MECP2 {Human (Homo s	99.27

>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methylation-dependent transcriptional repressor MBD1/PCM1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9e-14  Score=112.44  Aligned_cols=45  Identities=36%  Similarity=0.659  Sum_probs=42.1

Q ss_pred             CCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHh
Q 009314           12 GLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVET   57 (537)
Q Consensus        12 ~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeT   57 (537)
                      .||+||.+|+++|++| ++++.|.||++| +|++||||+||.+||..
T Consensus        10 ~LP~GW~re~~~Rk~g~~~gk~DvyY~sP-~Gkk~RS~~ev~~yL~~   55 (75)
T d1ig4a_          10 ALGPGWKRREVFRKSGATCGRSDTYYQSP-TGDRIRSKVELTRYLGP   55 (75)
T ss_dssp             TTCTTCEEEEECCCSSSSTTCCEEEEECS-SSCEECSHHHHHHHHCS
T ss_pred             CCCCCcEEEEEEEcCCCCCCceeEEEECC-CCCEEeCHHHHHHHhcc
Confidence            7999999999999998 567999999999 89999999999999954

>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: Methyl-CpG-binding domain, MBD
domain: Methyl-CpG-binding protein 2, MECP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.9e-13  Score=110.11  Aligned_cols=46  Identities=39%  Similarity=0.734  Sum_probs=42.7

Q ss_pred             CCCCCceeEEEEcCCC-CCccccccccCCCCCceeccHHHHHHHHHhC
Q 009314           12 GLPPGWTKEIKVTKTG-RKVRRDPYYIDPASGYIFRSMKDAVRYVETG   58 (537)
Q Consensus        12 ~LPdGWikEi~~RksG-s~~r~DkYY~dPvSGykFRSkkeV~rYLeTG   58 (537)
                      .||+||.+|+++|++| +.++.|.||++| +|++|||++||.+||+..
T Consensus        23 ~Lp~GW~r~~~~R~~g~~~gk~Dvyy~sP-~Gkk~RS~~eV~~yL~~~   69 (92)
T d1qk9a_          23 TLPEGWTRKLKQRKSGRSAGKYDVYLINP-QGKAFRSKVELIAYFEKV   69 (92)
T ss_dssp             CSSSSCEEEECCCCCSSSCSCCCEEEEET-TTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEecCCCCCceeeEEEECC-CCCeeecHHHHHHHHHHC
Confidence            5999999999999998 468999999999 799999999999999864