Citrus Sinensis ID: 009328

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVASATPNLVQPVLAKNKRPRLSMEVPPLDLPSAASAPWSARLAQSHNLTQLSVTAEDKRIDNHVAWHHKHSDFSSNSNFMSRTQSDGEWLTSPRVKFSQQLFQEAIDDNKNISAWPAHSGHSTPHPSKPNNDTLLEQVETGRKTETGTSCRLFGIELINHATSSAPSEKVPVSSLTTEGHIISTISAAADSDGKSDIAKEFKEKKQEQVQVSPKESQSKQSCLTSNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRIFICSSQDVKKMSPGSKLPMFSIEGEDILLSSDSAEK
ccccccccEEEEEEcccccEEEEEEEEcccccccccccccccccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHcccEEEEEEcccccccEEEHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHccccccccccccEEEEEEccccEEEcccccHHHHHHcccEEEEEccccccccccccccccccccccccccccccccc
ccccccHHHHHHHHccccEEEEEEEEccccccEEEccccEEEEcccEEEcccEEEEEEcccccEEEEEEEccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccEEEEHHHHHHHHHccccEcEEEEEEEcccccccEEEEEEEEEcccccccccccccEEEEEEccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEHccccHHHHHHHHHHHHccccccccccccEEEEEcccccEEEEccccHHHHHHHHEEEEEEcHHHHHHcccccccccccccccccccccccccc
MNQSTPTQELVAKDLHGYEWRFKhifrgqprrhllttgwstfvtskrlvagdtfvflrgengelhVGVRCLarqqssmpssvissqsmhLGVLATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKmrfegedsperrfsgtvvgvedfsphwkdskwrslkvqwdepasitrpdrvspweiepfvasatpnlvqpvlaknkrprlsmevppldlpsaasapwsarlaqshnltqlsvtaedkridnhvawhhkhsdfssnsnfmsrtqsdgewltsprvkFSQQLFQEAIddnknisawpahsghstphpskpnndtLLEQVETgrktetgtscRLFGIELINhatssapsekvpvsslttegHIISTIsaaadsdgkSDIAKEFKEKKqeqvqvspkesqskqscltsnrsrtKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKgqlhtrtkweivytddegdmmlvgddpwhEFCNMVKRIFIcssqdvkkmspgsklpmfsiegedillssdsaek
mnqstptqelvAKDLHGYEWRFKHIfrgqprrhlLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKMRFegedsperrfsgtvvgvedfsphwkdskwrslkvqwdepasitrpdrvspWEIEPFvasatpnlvqpvlAKNKRPRLSMEVPPLDLPSAASAPWSARLAQSHNLTQLSVTAEDKRIDNHVAWHhkhsdfssnsnfMSRTQSDGEWLTSPRVKFSQQLFQEAIDDNKNISAWPAHSghstphpskpnnDTLLEQVETGRKTETGTSCRLFGIELINhatssapsekVPVSSLTTEGHIISTisaaadsdgKSDIAKEFKEkkqeqvqvspkesqskqscltsnrsrtkvqmqgvAVGRALDLTTLVGYDHLIDELEEMFdikgqlhtrtKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRIFICSSQDVKKMspgsklpmfsiegedillssdsaek
MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRCLARqqssmpssvissqsMHLGVLATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVASATPNLVQPVLAKNKRPRLSMEVppldlpsaasapwsarlaQSHNLTQLSVTAEDKRIDNHVAWHHKHSDFSSNSNFMSRTQSDGEWLTSPRVKFSQQLFQEAIDDNKNISAWPAHSGHSTPHPSKPNNDTLLEQVETGRKTETGTSCRLFGIELINHATSSAPSEKVPVSSLTTEGHIISTISAAADSDGKSDIAkefkekkqeqvqvSPKESQSKQSCLTSNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRIFICSSQDVKKMSPGSKLPMFSIEGEDILLSSDSAEK
*********LVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRCLA***************MHLGVLATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKMRFE********FSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVASATPNLV****************************************************NHVAWH*********************************************************************************SCRLFGIELINH*************************************************************************MQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRIFICSS*******************************
*****PT**LVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRC***********************ATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVAS**************************************LAQSHNLTQLSVTAEDKRIDNH**************************************************************************************************************************************AKEFKEKKQEQVQVSPKESQS***************MQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRIFI**********************************
*********LVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRCLA************SQSMHLGVLATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVASATPNLVQPVLAKNKRPRLSMEVPPLDLPSAASAPWSARLAQSHNLTQLSVTAEDKRIDNHVAWHHKHSDFSSNSNFMSRTQSDGEWLTSPRVKFSQQLFQEAIDDNKNISAWP***********KPNNDTLLEQVETGRKTETGTSCRLFGIELINHAT*************TTEGHIISTISAAADSDGKSDIAKEF********************************MQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRIFICSSQDVKKMSPGSKLPMFSIEGEDILLSSDSAEK
**QSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRCLARQQS*MPSS*****SMHLGVLATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVASATPNLVQP*****************************************VTAED**IDNHVAWH*******S*S**********************************************************************TSCRLFGIELINH****************************************************************SNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRIFICSSQDVKKM*************************
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MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDEPASITRPDRVSPWEIEPFVASATPNLVQPVLAKNKRPRLSMEVPPLDLPSAASAPWSARLAQSHNLTQLSVTAEDKRIDNHVAWHHKHSDFSSNSNFMSRTQSDGEWLTSPRVKFSQQLFQEAIDDNKNISAWPAHSGHSTPHPSKPNNDTLLEQVETGRKTETGTSCRLFGIELINHATSSAPSEKVPVSSLTTEGHIISTISAAADSDGKSDIAKEFKEKKQEQVQVSPKESQSKQSCLTSNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTDDEGDMMLVGDDPWHEFCNMVKRIFICSSQDVKKMSPGSKLPMFSIEGEDILLSSDSAEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query537 2.2.26 [Sep-21-2011]
Q9XED8638 Auxin response factor 9 O yes no 0.886 0.746 0.589 1e-159
Q9C5W9602 Auxin response factor 18 no no 0.798 0.712 0.5 1e-131
Q0JCZ4673 Auxin response factor 9 O yes no 0.906 0.723 0.495 1e-128
Q6YVY0678 Auxin response factor 7 O no no 0.893 0.707 0.498 1e-127
Q8L7G0665 Auxin response factor 1 O no no 0.871 0.703 0.481 1e-122
Q5NB85699 Auxin response factor 1 O no no 0.921 0.708 0.444 1e-118
Q9C8N7598 Auxin response factor 22 no no 0.806 0.724 0.461 1e-114
Q9C8N9606 Putative auxin response f no no 0.815 0.722 0.449 1e-114
Q9LQE3593 Putative auxin response f no no 0.802 0.726 0.443 1e-113
Q9XID4593 Auxin response factor 12 no no 0.806 0.730 0.451 1e-111
>sp|Q9XED8|ARFI_ARATH Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=1 SV=1 Back     alignment and function desciption
 Score =  563 bits (1450), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 311/528 (58%), Positives = 380/528 (71%), Gaps = 52/528 (9%)

Query: 1   MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE 60
           M Q TPTQELVA+D+HGY+W+FKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE
Sbjct: 147 MTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE 206

Query: 61  NGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRTSQFIIS 120
           NGEL VGVR    QQSSMPSSVISS SMHLGVLATA HA  T+TMF+VYYKPRTSQFIIS
Sbjct: 207 NGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRTSQFIIS 266

Query: 121 LNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDE 180
           LNKYLEA++NKF+VGMR+KMRFEGEDSPERR+SGTV+GV+D SPHWKDSKWR L+V WDE
Sbjct: 267 LNKYLEAMSNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRCLEVHWDE 326

Query: 181 PASITRPDRVSPWEIEPFVASATPNLVQPVLAKNKRPRLSMEVPPLDLPSAASAPWSARL 240
           PASI+RP++VSPWEIEPFV S   N+ + V+ KNKRPR   EV  LD+   AS  WS+ L
Sbjct: 327 PASISRPNKVSPWEIEPFVNSE--NVPKSVMLKNKRPRQVSEVSALDVGITASNLWSSVL 384

Query: 241 AQSHNLTQLSVTAEDKRIDNHVAWHHKHSDFSSNSNFMSRTQSDGEWLTSPRVKFSQQLF 300
            Q H   Q  +T++                                W +SP     QQ  
Sbjct: 385 TQPHEFAQSCITSQ--------------------------------W-SSP-----QQCH 406

Query: 301 QEAIDDNKNISAWPAHSGHSTPHPSKPN--NDTLLEQVETGRKTETGTSCRLFGIELINH 358
           ++A +D K  S W  ++ +S  + +K +  ND ++  VE  +K ET  + RLFGI+L++ 
Sbjct: 407 RDANEDAKK-SDW-LNNSYSVSNVAKDSTLNDQMVSPVEQ-KKPETTANYRLFGIDLMSS 463

Query: 359 ATSSAPSEKVPVSSLTTEGHIISTISAAADSDGKSDIAKEFKEKKQEQVQVSPKESQSKQ 418
           + +    +  P+  +      IS  +  + SD KS+I+K  +EKKQE  + SPKE QSKQ
Sbjct: 464 SLAVPEEKTAPMRPIN-----ISKPTMDSHSDPKSEISKVSEEKKQEPAEGSPKEVQSKQ 518

Query: 419 SCLTSNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIVYTD 478
           S  +S RSRTKVQMQGV VGRA+DL  L GY+ LID++E++FDIKG+L +R +WEIV+TD
Sbjct: 519 S--SSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRSRNQWEIVFTD 576

Query: 479 DEGDMMLVGDDPWHEFCNMVKRIFICSSQDVKKMSPGSKLPMFSIEGE 526
           DEGDMMLVGDDPW EFCNMVKRIFI S ++VKKM+PG++L M   E E
Sbjct: 577 DEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTPGNQLRMLLREVE 624
Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5W9|ARFR_ARATH Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1 Back     alignment and function description
>sp|Q0JCZ4|ARFI_ORYSJ Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1 Back     alignment and function description
>sp|Q6YVY0|ARFG_ORYSJ Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1 Back     alignment and function description
>sp|Q8L7G0|ARFA_ARATH Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2 Back     alignment and function description
>sp|Q5NB85|ARFA_ORYSJ Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C8N7|ARFV_ARATH Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8N9|ARFU_ARATH Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=3 SV=2 Back     alignment and function description
>sp|Q9LQE3|ARFO_ARATH Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2 Back     alignment and function description
>sp|Q9XID4|ARFL_ARATH Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
255555629 694 hypothetical protein RCOM_1311830 [Ricin 0.986 0.763 0.765 0.0
297742361 682 unnamed protein product [Vitis vinifera] 0.981 0.772 0.699 0.0
359473930 693 PREDICTED: auxin response factor 9-like 0.973 0.754 0.686 0.0
356504356 691 PREDICTED: auxin response factor 9-like 0.973 0.756 0.680 0.0
356496084 692 PREDICTED: auxin response factor 9-like 0.975 0.757 0.672 0.0
357469307 666 Auxin response factor [Medicago truncatu 0.945 0.762 0.654 0.0
359489584 764 PREDICTED: auxin response factor 18-like 0.981 0.689 0.616 0.0
356520917 664 PREDICTED: auxin response factor 9-like 0.947 0.766 0.642 1e-180
449462567 641 PREDICTED: auxin response factor 9-like 0.972 0.814 0.624 1e-176
449533118 669 PREDICTED: LOW QUALITY PROTEIN: auxin re 0.972 0.780 0.624 1e-176
>gi|255555629|ref|XP_002518850.1| hypothetical protein RCOM_1311830 [Ricinus communis] gi|223541837|gb|EEF43383.1| hypothetical protein RCOM_1311830 [Ricinus communis] Back     alignment and taxonomy information
 Score =  820 bits (2119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/541 (76%), Positives = 464/541 (85%), Gaps = 11/541 (2%)

Query: 1   MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE 60
           M Q TPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGD+FVFLRGE
Sbjct: 159 MTQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGE 218

Query: 61  NGELHVGVRCLARQQSSMPSSVISSQSMHLGVLATASHAVATQTMFVVYYKPRTSQFIIS 120
           NGEL VGVR LARQQSSMPSSVISSQSMHLGVLATASHAVATQT+FVVYYKPRTSQFIIS
Sbjct: 219 NGELRVGVRRLARQQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIS 278

Query: 121 LNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDE 180
           LNKYLEA+NNKF+VGMR+KMRFEGEDSPERRFSGT+VGVEDFSPHW DSKWR LKVQWDE
Sbjct: 279 LNKYLEAINNKFSVGMRFKMRFEGEDSPERRFSGTIVGVEDFSPHWLDSKWRQLKVQWDE 338

Query: 181 PASITRPDRVSPWEIEPFVASATPNLVQPVLAKNKRPRLSMEVPPLDLPSAASAPWSARL 240
           PASI RPD+VSPWEIEPF ASA  N+ QPV  KNKRPR  +EVP LDL S AS  W++RL
Sbjct: 339 PASIPRPDKVSPWEIEPFSASAPSNISQPVPLKNKRPRPPIEVPTLDLSSTASPLWNSRL 398

Query: 241 AQSHNLTQLSVTAEDKRIDNHVAWHHKHSDFSSNSNFMSRTQSDGEWLTSPRVKFSQQLF 300
            QSH+LTQLSVTAE KR +NH+ WHHK +D +S+SN +SRTQ++G WL+SP V  SQ LF
Sbjct: 399 TQSHDLTQLSVTAEGKRNENHIMWHHKQNDINSHSNSISRTQTEGGWLSSPLVNVSQHLF 458

Query: 301 QEAIDDNKNISAWPAHSGHSTPHPSKPNNDTLLEQVETGRKTETGTSCRLFGIELINHAT 360
           QE  +D+K++S WP  SG+STP  SK  ND++L+ VE GRK++  TS RLFGIELINH+ 
Sbjct: 459 QEVTEDSKSVSNWPVVSGYSTPQSSK-LNDSILDPVEKGRKSDVATSYRLFGIELINHSA 517

Query: 361 SSAPSEKVP-----VSSLTTEGHIISTISAAADSDGKSDIAKEFKEKKQEQVQVSPKESQ 415
           SS P+EK P     VSS TTE H++ST+S AADSD KSDI+   KE+K EQ+ VSPK++Q
Sbjct: 518 SSLPTEKAPAQPLSVSSGTTEAHVVSTLS-AADSDQKSDIS---KERKPEQLHVSPKDAQ 573

Query: 416 SKQSCLTSNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMFDIKGQLHTRTKWEIV 475
           S+QS   S RSRTKVQMQGVAVGRA+DLT + GY+ L+DELEEMFDIKGQLH R KWEIV
Sbjct: 574 SRQSS-ASTRSRTKVQMQGVAVGRAIDLTMIKGYNQLLDELEEMFDIKGQLHPRDKWEIV 632

Query: 476 YTDDEGDMMLVGDDPWHEFCNMVKRIFICSSQDVKKMSPGSKLPMFSIEGEDILLSSDSA 535
           YTDDEGDMMLVGDDPW EFCNMV+RIFICSSQDVKKM PGSKLPMFS EGE  ++SSDSA
Sbjct: 633 YTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMMPGSKLPMFSTEGEGTVISSDSA 692

Query: 536 E 536
           +
Sbjct: 693 D 693

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742361|emb|CBI34510.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473930|ref|XP_002265162.2| PREDICTED: auxin response factor 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356504356|ref|XP_003520962.1| PREDICTED: auxin response factor 9-like [Glycine max] Back     alignment and taxonomy information
>gi|356496084|ref|XP_003516900.1| PREDICTED: auxin response factor 9-like [Glycine max] Back     alignment and taxonomy information
>gi|357469307|ref|XP_003604938.1| Auxin response factor [Medicago truncatula] gi|355505993|gb|AES87135.1| Auxin response factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|359489584|ref|XP_002264072.2| PREDICTED: auxin response factor 18-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356520917|ref|XP_003529106.1| PREDICTED: auxin response factor 9-like [Glycine max] Back     alignment and taxonomy information
>gi|449462567|ref|XP_004149012.1| PREDICTED: auxin response factor 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449533118|ref|XP_004173524.1| PREDICTED: LOW QUALITY PROTEIN: auxin response factor 9-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
TAIR|locus:2138096638 ARF9 "auxin response factor 9" 0.525 0.442 0.616 3e-142
TAIR|locus:2076765602 ARF18 "auxin response factor 1 0.402 0.358 0.665 4.5e-119
TAIR|locus:2039124622 ARF11 "auxin response factor 1 0.413 0.356 0.678 5.7e-117
TAIR|locus:2025991665 ARF1 "auxin response factor 1" 0.405 0.327 0.633 8e-110
TAIR|locus:2036288598 ARF22 "auxin response factor 2 0.411 0.369 0.569 6.4e-106
TAIR|locus:2174013 859 ARF2 "auxin response factor 2" 0.400 0.250 0.617 3.2e-104
TAIR|locus:2009298606 ARF21 "auxin response factor 2 0.402 0.356 0.555 1.7e-101
TAIR|locus:2014731605 ARF14 "auxin response factor 1 0.411 0.365 0.538 7.1e-101
TAIR|locus:2026145593 ARF12 "auxin response factor 1 0.411 0.372 0.542 1.2e-100
TAIR|locus:2206717590 ARF20 "auxin response factor 2 0.392 0.357 0.558 2.4e-100
TAIR|locus:2138096 ARF9 "auxin response factor 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 904 (323.3 bits), Expect = 3.0e-142, Sum P(2) = 3.0e-142
 Identities = 177/287 (61%), Positives = 205/287 (71%)

Query:     1 MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE 60
             M Q TPTQELVA+D+HGY+W+FKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE
Sbjct:   147 MTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE 206

Query:    61 NGELHVGVRCLARXXXXXXXXXXXXXXMHLGVLATASHAVATQTMFVVYYKPRTSQFIIS 120
             NGEL VGVR                  MHLGVLATA HA  T+TMF+VYYKPRTSQFIIS
Sbjct:   207 NGELRVGVRRANLQQSSMPSSVISSHSMHLGVLATARHATQTKTMFIVYYKPRTSQFIIS 266

Query:   121 LNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSPHWKDSKWRSLKVQWDE 180
             LNKYLEA++NKF+VGMR+KMRFEGEDSPERR+SGTV+GV+D SPHWKDSKWR L+V WDE
Sbjct:   267 LNKYLEAMSNKFSVGMRFKMRFEGEDSPERRYSGTVIGVKDCSPHWKDSKWRCLEVHWDE 326

Query:   181 PASITRPDRVSPWEIEPFVASATPNLVQPVLAKNKRPRLSMEVXXXXXXXXXXXXXXXXX 240
             PASI+RP++VSPWEIEPFV S   N+ + V+ KNKRPR   EV                 
Sbjct:   327 PASISRPNKVSPWEIEPFVNSE--NVPKSVMLKNKRPRQVSEVSALDVGITASNLWSSVL 384

Query:   241 XQSHNLTQLSVTAE---DKRIDNHVAWHHKHSDFSSNSNFMSRTQSD 284
              Q H   Q  +T++    ++         K SD+ +NS  +S    D
Sbjct:   385 TQPHEFAQSCITSQWSSPQQCHRDANEDAKKSDWLNNSYSVSNVAKD 431
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS
GO:0009725 "response to hormone stimulus" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2076765 ARF18 "auxin response factor 18" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039124 ARF11 "auxin response factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025991 ARF1 "auxin response factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036288 ARF22 "auxin response factor 22" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174013 ARF2 "auxin response factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009298 ARF21 "auxin response factor 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014731 ARF14 "auxin response factor 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026145 ARF12 "auxin response factor 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206717 ARF20 "auxin response factor 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XED8ARFI_ARATHNo assigned EC number0.58900.88640.7460yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006721001
SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (653 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
pfam0650783 pfam06507, Auxin_resp, Auxin response factor 8e-38
pfam02309188 pfam02309, AUX_IAA, AUX/IAA family 1e-35
pfam0236297 pfam02362, B3, B3 DNA binding domain 5e-20
smart0101996 smart01019, B3, B3 DNA binding domain 1e-16
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 4e-13
>gnl|CDD|191545 pfam06507, Auxin_resp, Auxin response factor Back     alignment and domain information 
 Score =  133 bits (337), Expect = 8e-38
 Identities = 49/83 (59%), Positives = 63/83 (75%), Gaps = 3/83 (3%)

Query: 96  ASHAVATQTMFVVYYKPR--TSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFS 153
           A+HA +T + F V+Y PR  TS+F++   KYL+A+NN F+VGMR+KMRFE EDS ERRFS
Sbjct: 1   AAHAASTGSPFHVFYNPRASTSEFVVPYAKYLKAMNNPFSVGMRFKMRFETEDSSERRFS 60

Query: 154 GTVVGVEDFSP-HWKDSKWRSLK 175
           GT+ GV D  P  W +SKWRSL+
Sbjct: 61  GTISGVSDLDPIRWPNSKWRSLQ 83

A conserved region of auxin-responsive transcription factors. Length = 83
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family Back     alignment and domain information
>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 537
PF02309215 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A 100.0
PF0650783 Auxin_resp: Auxin response factor; InterPro: IPR01 100.0
KOG06441113 consensus Uncharacterized conserved protein, conta 99.67
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.04
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 97.05
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 96.61
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 96.55
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 96.5
cd0599281 PB1 The PB1 domain is a modular domain mediating s 96.48
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 96.18
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 96.07
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 95.18
cd0640986 PB1_MUG70 The MUG70 protein is a product of the me 94.83
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 94.08
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 93.16
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 93.14
cd0639782 PB1_UP1 Uncharacterized protein 1. The PB1 domain 91.51
>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression [] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-38  Score=305.54  Aligned_cols=94  Identities=46%  Similarity=0.802  Sum_probs=0.0

Q ss_pred             CCcceeEEEeccceeeeeecCCCCCChHHHHHHHHHHh---hhc----------cc--cCCCCceEEEEecCCCCeEEcc
Q 009328          423 SNRSRTKVQMQGVAVGRALDLTTLVGYDHLIDELEEMF---DIK----------GQ--LHTRTKWEIVYTDDEGDMMLVG  487 (537)
Q Consensus       423 ~~~~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF---~~~----------g~--l~~~~~~~v~Y~D~eGD~mlvG  487 (537)
                      ..++||||+|||++|||||||++|+||++|+.+|++||   +|.          +.  |...++|+|||+|+||||||||
T Consensus       107 ~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvG  186 (215)
T PF02309_consen  107 SSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVG  186 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEec
Confidence            46899999999999999999999999999999999999   676          22  3456799999999999999999


Q ss_pred             CCChHHHHhcceeEEEeecccccCCCCCC
Q 009328          488 DDPWHEFCNMVKRIFICSSQDVKKMSPGS  516 (537)
Q Consensus       488 D~PW~~F~~~vkri~I~~~~e~~~~~~~~  516 (537)
                      ||||++||++||||+||+.+|+++|+|++
T Consensus       187 D~PW~~F~~~vkRl~I~~~~e~~~~~~r~  215 (215)
T PF02309_consen  187 DVPWEEFVKSVKRLRIMKSSEAKGLAPRA  215 (215)
T ss_dssp             -----------------------------
T ss_pred             CCCHHHHHHHhhccEEecHHHhcccCCCC
Confidence            99999999999999999999999999974

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.
>PF06507 Auxin_resp: Auxin response factor; InterPro: IPR010525 This pattern represents a conserved region of auxin-responsive transcription factors Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>cd06397 PB1_UP1 Uncharacterized protein 1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 1e-05
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 2   NQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLR--G 59
           N S     L  +D++G  WRF++ +    + ++LT GWS FV  K L AGD   F R  G
Sbjct: 46  NVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNG 105
Query: 60  ENGELHVG 67
           ++ +L++G
Sbjct: 106 QDQQLYIG 113

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 6e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  102 bits (254), Expect = 6e-26
 Identities = 27/85 (31%), Positives = 42/85 (49%)

Query: 1   MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGE 60
            N S     L  +D++G  WRF++ +    + ++LT GWS FV  K L AGD   F R  
Sbjct: 45  SNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSN 104

Query: 61  NGELHVGVRCLARQQSSMPSSVISS 85
             +  + +   +R  S + +S  SS
Sbjct: 105 GQDQQLYIGWKSRSGSDLDASGPSS 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 99.72
4i1k_A146 B3 domain-containing transcription factor VRN1; B3 98.86
1yel_A104 AT1G16640; CESG, protein structure initiative, str 98.57
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 95.78
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 95.34
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 92.14
1q1o_A98 Cell division control protein 24; PB1 domain, PCCR 91.73
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 89.48
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 87.44
2bkf_A87 Zinc-finger protein NBR1 (NEXT to breast cancer 1; 81.38
1wj6_A101 KIAA0049 protein, RSGI RUH-024; PB1 domain, protei 80.61
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
Probab=99.72  E-value=5.1e-18  Score=153.06  Aligned_cols=72  Identities=32%  Similarity=0.548  Sum_probs=66.2

Q ss_pred             CCCcceEEEeecCCCceEeeEEEcCCCcceeccccccccccccccCCCCEEEEEecCC--CcEEEEEeeccccC
Q 009328            4 STPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGEN--GELHVGVRCLARQQ   75 (537)
Q Consensus         4 ~~P~Q~l~~~D~~G~~W~Fr~~yrg~prrh~LT~GWs~FV~~K~L~aGD~VvF~r~~~--g~l~vgiRR~~~~~   75 (537)
                      .++.|+|.++|.+|++|+|||+||+++++|+||+||+.||++|+|++||.|+|+|.++  +.|+|+|||+....
T Consensus        48 ~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~  121 (130)
T 1wid_A           48 SVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  121 (130)
T ss_dssp             SSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             CCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence            4567899999999999999999999999999999999999999999999999999764  57999999988654
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana} Back     alignment and structure
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A Back     alignment and structure
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 537
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 3e-18
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 5e-11
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 7e-08
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.5 bits (193), Expect = 3e-18
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)

Query: 1   MNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLR-- 58
            N S     L  +D++G  WRF++ +    + ++LT GWS FV  K L AGD   F R  
Sbjct: 38  SNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSN 97

Query: 59  GENGELHVGVRCLARQQSSMPS 80
           G++ +L++G +   R  S + +
Sbjct: 98  GQDQQLYIGWKS--RSGSDLDA 117
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.57
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 98.79
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 98.64
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 96.07
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 94.67
d1wmhb_82 Partitioning defective-6 homolog alpha, PAR-6 alph 88.11
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=1.3e-15  Score=132.00  Aligned_cols=71  Identities=32%  Similarity=0.556  Sum_probs=65.1

Q ss_pred             CCCCcceEEEeecCCCceEeeEEEcCCCcceeccccccccccccccCCCCEEEEEec--CCCcEEEEEeeccc
Q 009328            3 QSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRG--ENGELHVGVRCLAR   73 (537)
Q Consensus         3 ~~~P~Q~l~~~D~~G~~W~Fr~~yrg~prrh~LT~GWs~FV~~K~L~aGD~VvF~r~--~~g~l~vgiRR~~~   73 (537)
                      ..++.+++.+.|.+|++|.|+|+||+..++|+|++||..||++++|++||.|+|+|.  ++++++|++||+..
T Consensus        40 ~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          40 VSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             CSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             cCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHHcCCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            456788999999999999999999988899999999999999999999999999996  56789999998764
>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure