Citrus Sinensis ID: 009385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530------
Protein Sequence
MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSPDSSTQEA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHcccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEcccccccccccccHHHHHccccccccccccccccccccEEEEEEEEEccccccccccccccccccccHHHcccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHEcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcEEEEccccHEEEcccccccccccccccccccccccccccccEEEEEEEcccccccEEEEcccccccccccccEcccccccccccHHHHcEcccccccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHccHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MGVKVANTCLqwtqriipqspsssQALASAisspsskrrsrsscssdigplvCRYVqgldrsalfgpqlakqphrsrsceyypkpriqhaVRRTCSAsldafdenenetncrdnavnsesesrdsrdgfvdppweedEIIQESIERkansvdlplSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTvhsmasntslaatpppaaayhEYASTVEVHnqrrhkfdsssikpfsvfssrsgkttsiggnnggggkirpigsgtdgdggidrvdhfrtivpdgasqlssfgttrdaesvsgqvdreeELNLWNSIVDEasqmqvtdesldhetmerfvspvtanieaddyADYFRTELLYQtglaqepndpllLANYAQFLYIVAHDYDRAEEYFKRAiaveppdaesfsKYASFLWRVRNDLWAAEETFLEAisadptnsyyaANYANFLwntggedtcfplsspdsstqea
Flexible Loop (DISEMBL)
MGVKVANTCLQWtqriipqspsssqALASaisspsskrrsrsscssdigpLVCRYVQGLDRSALfgpqlakqphrsrsceyypkpriqhaVRRTCSASLdafdenenetncrdnavnsesesrdsrdgfvdppweEDEIIQesierkansvdlplsLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRrhkfdsssikpfsvfssrsgkttsiggnnggggkirpigsGTDGDGGIDRVDHFRTIVPDgasqlssfgttrdaesvsgqvdreeELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPlsspdsstqea
Low Complexity Region (SEG)
MGVKVANTCLQWTqriipqspsssqalasaisspsskrrsrsscssDIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLaatpppaaaYHEYASTVEVHNQRRHKFDsssikpfsvfssrsgkttsiggnnggggkirpigsgtdgdggidRVDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSPDSSTQEA
Disordered region (IsUnstruct)
*****ANTCLQWTQRI*******************************IGPLVCRYVQGLDRSALFGP*************YY*******************************************************************SVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMA******************************************************************************VDHFRTIV******************************LWNSIV*******************RFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF************
Disordered Region (DISOPRED)
*****ANTCLQWTQRII*********************************LVCRYVQGL**********************************TC*************************************PWEEDEII****E*****VDLPL*L**********************SVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTS*********************************************************************************************************DREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP***********
Disordered Region (DISEMBL)
MGVKVANTCLQWTQRIIP***************************SDIGPLVCRYVQGLDRSALFGP**********SCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRD****************VDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLS***************DREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP***********
Disordered Region (DISPRO)
*GVKVANTCLQWTQRI******************************DIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYA************FDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRP**SGTDGDGGIDRVDHFRTIVPDGASQ***************QVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSPDSSTQEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
224054554	545	predicted protein [Populus trichocarpa]	0.979	0.963	0.707	0.0
225434642	527	PREDICTED: uncharacterized protein LOC10	0.972	0.988	0.697	0.0
224104295	575	predicted protein [Populus trichocarpa]	0.986	0.92	0.659	0.0
297745926	469	unnamed protein product [Vitis vinifera]	0.867	0.991	0.635	1e-180
255569303	546	conserved hypothetical protein [Ricinus	0.968	0.950	0.648	1e-177
449467475	546	PREDICTED: uncharacterized protein LOC10	0.957	0.939	0.601	1e-176
449518503	546	PREDICTED: uncharacterized protein LOC10	0.957	0.939	0.599	1e-175
356566185	532	PREDICTED: uncharacterized protein LOC10	0.947	0.954	0.596	1e-164
449450800	567	PREDICTED: uncharacterized protein LOC10	0.951	0.899	0.553	1e-159
449496587	567	PREDICTED: uncharacterized LOC101211174	0.951	0.899	0.551	1e-158

>gi|224054554|ref|XP_002298318.1| predicted protein [Populus trichocarpa] gi|222845576|gb|EEE83123.1| predicted protein [Populus trichocarpa]

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/547 (70%), Positives = 429/547 (78%), Gaps = 22/547 (4%)

Query: 1   MGVKVANT-CLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGL 59
           MGVKVA T C QW Q II  SPSSSQALASAI+SPSSKR+ R    +  G LVCRYVQ L
Sbjct: 1   MGVKVATTTCFQWPQPIIHHSPSSSQALASAIASPSSKRQ-RGFDGAGGGMLVCRYVQRL 59

Query: 60  DRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSE 119
            R ALFG     +  R+RSCE   KPR Q  +R   SASLDAF + E     +D A    
Sbjct: 60  GRRALFGSPFTTKLQRARSCESQ-KPRGQTTIR-ASSASLDAFSDEEFSKKIQDLA--RR 115

Query: 120 SESRDSRDGFVDPPWEE-----------DEIIQESIERKANSVDLPLSLRIIKRKLQWQD 168
               D  D  V P W E           D+II  SIERKANSVD+PLSLR+IKRK+QWQ+
Sbjct: 116 FRLSDDDDDSVKPQWPEIRQEPPDWSGRDDIIPASIERKANSVDIPLSLRMIKRKMQWQE 175

Query: 169 GFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVW 228
           GFREAGESAYCSVK AFSSMVFIIRELHS +LQMRE LF EDLQGIL RVQ+EMHASFVW
Sbjct: 176 GFREAGESAYCSVKAAFSSMVFIIRELHSHSLQMREFLFTEDLQGILARVQQEMHASFVW 235

Query: 229 LFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPA--AAYHEYASTVEVHNQRR 286
           LFQQVFSHTPTLMVYVMILLANFTVHSMA+NT++AA P     AA  E  S VE  +Q+ 
Sbjct: 236 LFQQVFSHTPTLMVYVMILLANFTVHSMANNTAIAAPPNTGSYAATTESVSVVENLDQKN 295

Query: 287 HKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDG 346
            KF SSS+K FSV SS SGKTTSIGGNNGGGGK+RP+ SGT+GDG  D+   FRTIVPDG
Sbjct: 296 QKFYSSSVKTFSVPSS-SGKTTSIGGNNGGGGKVRPVASGTEGDGWFDQSSQFRTIVPDG 354

Query: 347 ASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQ--VTDESLDHETMERFVSPV 404
           ASQLSS GT+R+AESVS QV   EEL+LWNSIVDEAS+MQ  + D SLDHET  RFVSP+
Sbjct: 355 ASQLSSLGTSREAESVSEQVSGAEELSLWNSIVDEASKMQSSLRDVSLDHETTHRFVSPI 414

Query: 405 TANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV 464
           +A IEADDY DYFRT+LLYQTGL+Q+PN+PLLLANYAQFLYIVAHDYDRAE+YFKRAI V
Sbjct: 415 SAKIEADDYEDYFRTDLLYQTGLSQDPNNPLLLANYAQFLYIVAHDYDRAEDYFKRAIGV 474

Query: 465 EPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524
           EPPD E++SKYASFLW V+ DLWAAEETFLEAISADPTNSYYAANYA+FLWNTGGEDTCF
Sbjct: 475 EPPDGEAYSKYASFLWHVKRDLWAAEETFLEAISADPTNSYYAANYAHFLWNTGGEDTCF 534

Query: 525 PLSSPDS 531
           PL SPD+
Sbjct: 535 PLGSPDN 541

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434642|ref|XP_002279786.1| PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/542 (69%), Positives = 433/542 (79%), Gaps = 21/542 (3%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MGVKVA TCLQW+Q I+  SPSSSQ LASAISSP SKRR+R  C  D G LVCRYV  LD
Sbjct: 1   MGVKVATTCLQWSQPIVSHSPSSSQTLASAISSPPSKRRNR--C--DGGALVCRYVHRLD 56

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSES 120
           RSA FG    K    SRS E  PKPR  H ++R CSA LD+  + E      + A+  + 
Sbjct: 57  RSAFFGIPSTKL-CSSRSFES-PKPR-AHKIKRACSAGLDSLSDEEFSKRIEELALRFQV 113

Query: 121 ESRDSRDGFVDPP-WE-EDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAY 178
              D      +PP W   DEI+  +IERKANSVDLPLSLRIIKRK QWQ+GFREAGESAY
Sbjct: 114 SDEDE-----NPPDWPGRDEIVPANIERKANSVDLPLSLRIIKRKKQWQEGFREAGESAY 168

Query: 179 CSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTP 238
           CSVKKAFSSMVFIIRELHSFTLQMRE+L Y+DLQGIL RVQ+EMHASFVWLFQQVFSHTP
Sbjct: 169 CSVKKAFSSMVFIIRELHSFTLQMREVLLYQDLQGILDRVQQEMHASFVWLFQQVFSHTP 228

Query: 239 TLMVYVMILLANFTVHSMASNTSLAATPPPA--AAYHEYASTVEVHNQRRHKFDSSSIKP 296
           TLMVYVMILLANFTV+S+A+NT++AA+PPP+  AA  E     +    ++ KFDSS IK 
Sbjct: 229 TLMVYVMILLANFTVYSIANNTAIAASPPPSPHAATIESVLVSDSQQDKQQKFDSSIIKK 288

Query: 297 FSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTT 356
           FSV SS +GKTTSIG N GGGGK+RP  SGTDGDG  DR +  +TI+PDG SQ+S  GTT
Sbjct: 289 FSV-SSTNGKTTSIGNNGGGGGKVRPAASGTDGDGRFDRSEFHQTILPDGVSQIS-IGTT 346

Query: 357 RDAESVSGQVDREEELNLWNSIVDEASQMQ--VTDESLDHETMERFVSPVTANIEADDYA 414
           R++ESVSG+V REEE+  WNSIVDEAS+MQ  + DESLDHETM+RFVSPV A IEADDYA
Sbjct: 347 RESESVSGEVTREEEVAHWNSIVDEASKMQAALRDESLDHETMQRFVSPVEAKIEADDYA 406

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
           DYFR ELLYQ GLA+EPN+PLLLANYAQFLY+VAHDYDRAEEYFKRAIAVEPPDAE+++K
Sbjct: 407 DYFRAELLYQMGLAREPNNPLLLANYAQFLYLVAHDYDRAEEYFKRAIAVEPPDAEAYNK 466

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSPDSSTQ 534
           YASFLW  + DLWAAEET+LEAI+ADP+N+YYAANYA+FLW+TGG+DTCFPL SP   TQ
Sbjct: 467 YASFLWVAKKDLWAAEETYLEAIAADPSNTYYAANYAHFLWSTGGDDTCFPL-SPSDDTQ 525

Query: 535 EA 536
           +A
Sbjct: 526 DA 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104295|ref|XP_002313386.1| predicted protein [Populus trichocarpa] gi|222849794|gb|EEE87341.1| predicted protein [Populus trichocarpa]

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/579 (65%), Positives = 439/579 (75%), Gaps = 50/579 (8%)

Query: 1   MGVKVANT-CLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGL 59
           MG+KVA T C QW+Q I   SPSSSQ+LASAISSPSSKR+ R   +     L+CR +Q L
Sbjct: 1   MGLKVATTTCFQWSQPITHHSPSSSQSLASAISSPSSKRQRRFDGTGGC-VLLCRCLQRL 59

Query: 60  DRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVN-- 117
           DR  LFG  L K   R+RS E+  K R Q  ++R  SASLDAF + E     ++ A+   
Sbjct: 60  DRRTLFGTPLTK-IQRARSLEF-QKSRGQ-TIKRASSASLDAFSDEEFSKKIQELALRFQ 116

Query: 118 -------------SESES-RDSRDGF------------VDPPWEE-----------DEII 140
                        SESE   DS D              ++PPW E           D+II
Sbjct: 117 LSDDDDDGSDAVDSESEILSDSGDNLGMHDQRQFPLDSMEPPWPEIRQEPPDWSGRDDII 176

Query: 141 QESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTL 200
             SIERKANSVDLPLSLR+I+RK+QWQ+GFREAGESAYCSVKKAF SMVFIIRELH+++L
Sbjct: 177 PASIERKANSVDLPLSLRMIRRKMQWQEGFREAGESAYCSVKKAFCSMVFIIRELHAYSL 236

Query: 201 QMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNT 260
           QMRE LF EDLQGIL RVQ+EMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMA+N 
Sbjct: 237 QMREFLFTEDLQGILARVQKEMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMANNA 296

Query: 261 SLAATPPPA--AAYHEYASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGG 318
           +LAA P     AA  E  S VE  +Q+  KFDSSS+K FSV SS SGKTTSIGGNNGGGG
Sbjct: 297 ALAAPPNSGSYAATTESISVVETPDQKNQKFDSSSVKMFSV-SSSSGKTTSIGGNNGGGG 355

Query: 319 KIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSI 378
           K+RP+ SGT+GDG  D+ +  RTIVPDGASQLSS GT+R+AES S QV REEEL+LWNSI
Sbjct: 356 KVRPLASGTEGDGWFDQSNQIRTIVPDGASQLSSLGTSREAESASEQVSREEELSLWNSI 415

Query: 379 VDEASQMQ---VTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPL 435
           V+EAS+MQ   + DESLDHET++RFVSP+ A IEADDYA+YFRT+L YQ GL+Q+PN+PL
Sbjct: 416 VEEASKMQYFPLRDESLDHETIQRFVSPINAKIEADDYAEYFRTDLQYQMGLSQDPNNPL 475

Query: 436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLE 495
           LLANYAQFL +V HDYDRAEEYFKRAI  EPPDAE++SKYASFLW VR DLWAAEETFLE
Sbjct: 476 LLANYAQFLNMVFHDYDRAEEYFKRAIGAEPPDAEAYSKYASFLWHVRKDLWAAEETFLE 535

Query: 496 AISADPTNSYYAANYANFLWNTGGEDTCFPLSSPDSSTQ 534
           AISADPTNSYYAANYA+FLWNTGGEDTCFPLSS D++ +
Sbjct: 536 AISADPTNSYYAANYAHFLWNTGGEDTCFPLSSQDNAQE 574

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745926|emb|CBI15982.3| unnamed protein product [Vitis vinifera]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 343/540 (63%), Positives = 395/540 (73%), Gaps = 75/540 (13%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MGVKVA TCLQW+Q I+  SPSSSQ LASAISSP SKRR+R     D G LVCRYV  LD
Sbjct: 1   MGVKVATTCLQWSQPIVSHSPSSSQTLASAISSPPSKRRNRC----DGGALVCRYVHRLD 56

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSES 120
           RSA FG    K    SRS E  PKPR  H ++R CSA LD+  + E      + A+  + 
Sbjct: 57  RSAFFGIPSTKL-CSSRSFES-PKPR-AHKIKRACSAGLDSLSDEEFSKRIEELALRFQV 113

Query: 121 ESRDSRDGFVDPP-WE-EDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAY 178
              D      +PP W   DEI+  +IERKANSVDLPLSLRIIKRK QWQ+GFREAGESAY
Sbjct: 114 SDEDE-----NPPDWPGRDEIVPANIERKANSVDLPLSLRIIKRKKQWQEGFREAGESAY 168

Query: 179 CSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTP 238
           CSVKKAFSSMVFIIRELHSFTLQMRE        GIL RVQ+EMHASFVWLFQQVFSHTP
Sbjct: 169 CSVKKAFSSMVFIIRELHSFTLQMRE--------GILDRVQQEMHASFVWLFQQVFSHTP 220

Query: 239 TLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFS 298
           TLMVYVMILLANFTV+S+A+NT++AA+PPP+     +A+T++                  
Sbjct: 221 TLMVYVMILLANFTVYSIANNTAIAASPPPSP----HAATID------------------ 258

Query: 299 VFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRD 358
                                      GTDGDG  DR +  +TI+PDG SQ+S  GTTR+
Sbjct: 259 ---------------------------GTDGDGRFDRSEFHQTILPDGVSQIS-IGTTRE 290

Query: 359 AESVSGQVDREEELNLWNSIVDEASQMQ--VTDESLDHETMERFVSPVTANIEADDYADY 416
           +ESVSG+V REEE+  WNSIVDEAS+MQ  + DESLDHETM+RFVSPV A IEADDYADY
Sbjct: 291 SESVSGEVTREEEVAHWNSIVDEASKMQAALRDESLDHETMQRFVSPVEAKIEADDYADY 350

Query: 417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA 476
           FR ELLYQ GLA+EPN+PLLLANYAQFLY+VAHDYDRAEEYFKRAIAVEPPDAE+++KYA
Sbjct: 351 FRAELLYQMGLAREPNNPLLLANYAQFLYLVAHDYDRAEEYFKRAIAVEPPDAEAYNKYA 410

Query: 477 SFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSPDSSTQEA 536
           SFLW  + DLWAAEET+LEAI+ADP+N+YYAANYA+FLW+TGG+DTCFPL SP   TQ+A
Sbjct: 411 SFLWVAKKDLWAAEETYLEAIAADPSNTYYAANYAHFLWSTGGDDTCFPL-SPSDDTQDA 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569303|ref|XP_002525619.1| conserved hypothetical protein [Ricinus communis] gi|223535055|gb|EEF36737.1| conserved hypothetical protein [Ricinus communis]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 364/561 (64%), Positives = 426/561 (75%), Gaps = 42/561 (7%)

Query: 1   MGVKV--ANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQG 58
           MGVKV    TC QW+Q ++P SPS+SQ LASAISSPSSKRR RS  +   G LVCRYVQ 
Sbjct: 1   MGVKVVAGGTCFQWSQPVMPHSPSASQTLASAISSPSSKRRCRSDGT---GTLVCRYVQR 57

Query: 59  LDRSALFGPQLAKQPHRSRSCEY-YPKPRIQHAVRRTCSASLDAFDENE-----NETNCR 112
           +DR +LFG   +  PH  RS  + YPK      ++R CSASLDAF + E      E   R
Sbjct: 58  VDRFSLFGTS-SSTPHLHRSGSFEYPKSTRSDRIKRACSASLDAFSDEEFSKKIQELALR 116

Query: 113 --DNAVNSESESRDSRDGFVDPP-------------WEEDEIIQESIERKANSVDLPLSL 157
             +N V+S++ S ++ D  ++               +  D +    IERKANSV+LPLSL
Sbjct: 117 FQNNEVDSDTHSTNNNDVTIEEEEASSSQNHNERGVFGADSVDWSEIERKANSVELPLSL 176

Query: 158 RIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVR 217
           R+IKRK++WQ+ FRE   SAYCSVKKAFSSMVFIIRELHS+TLQMRE+LF +DLQG+LVR
Sbjct: 177 RMIKRKMRWQEEFRE---SAYCSVKKAFSSMVFIIRELHSYTLQMRELLFTQDLQGVLVR 233

Query: 218 VQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYAS 277
           VQ+EMHASFVWLFQQVFSHTPTLMVYVMILLANFTV+SM SN ++AA+PPPAA      S
Sbjct: 234 VQKEMHASFVWLFQQVFSHTPTLMVYVMILLANFTVYSMGSNIAIAASPPPAAYATATES 293

Query: 278 TVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGG-KIRPIGSGTDGDGGIDRV 336
            VE+ +Q   KFDSSS+K F V SS  GK+TSIGG+NG GG KIRP+GSGTDG    D  
Sbjct: 294 -VEIRDQ---KFDSSSVKTFLVSSSSDGKSTSIGGSNGSGGGKIRPVGSGTDG--WFDGS 347

Query: 337 DHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVT--DESLDH 394
           + FRTIVPDGASQLSS G     ESVSGQ  REEE +LWNSIVDEA +MQ +  D SLD 
Sbjct: 348 NQFRTIVPDGASQLSSPGEAE--ESVSGQETREEESSLWNSIVDEAWKMQASLRDGSLDR 405

Query: 395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRA 454
           ET++RFVSP+ A +E DDY+ Y  TEL YQTGL+Q+PN+PLLL NYAQFL +VA DYDRA
Sbjct: 406 ETVQRFVSPIKAIVEPDDYSAYLTTELFYQTGLSQDPNNPLLLTNYAQFLCLVAQDYDRA 465

Query: 455 EEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514
           EEYFKRAIAVEPPDAE++SKYASFLWRVRNDLWAAEETFLEAI+ADPTN+YYA NYA+FL
Sbjct: 466 EEYFKRAIAVEPPDAEAYSKYASFLWRVRNDLWAAEETFLEAINADPTNTYYAGNYAHFL 525

Query: 515 WNTGGEDTCFPLSSPDSSTQE 535
           WNTGGEDTCFPL+S D +TQE
Sbjct: 526 WNTGGEDTCFPLNSQD-NTQE 545

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467475|ref|XP_004151448.1| PREDICTED: uncharacterized protein LOC101203517 [Cucumis sativus]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 335/557 (60%), Positives = 410/557 (73%), Gaps = 44/557 (7%)

Query: 6   ANTCLQWTQRIIPQSPSSSQALASAISSP-SSKRRSRSSCSSDIGPLVCRYVQGLDRSAL 64
           A TC  W+Q   P  P+S Q L S + SP SSKRR+ +    D G LV R V  L++S L
Sbjct: 3   ATTCFHWSQPFTPHCPASPQTLTSTVLSPCSSKRRNYT----DGGSLVWRCVHRLEQSTL 58

Query: 65  FGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENE------------------ 106
           FG    K  HRSRSCE  PK +    ++RTCSASLDAF + E                  
Sbjct: 59  FGSSSTKL-HRSRSCEI-PK-QTSRGIKRTCSASLDAFSDEEFSRRIQELALRFQHSADA 115

Query: 107 NETNCRDNAVNSESESRDSRDGFVDPPWEE-----------DEIIQESIERKANSVDLPL 155
           +ET    ++ ++   + DS   FV+P W E           DE++   IER+ANS DLP+
Sbjct: 116 DETAGSSSSNDASCVNSDSLSEFVEPSWPETGHEPPDWPRPDELVPAMIERRANSFDLPV 175

Query: 156 SLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGIL 215
           SLR+IK+KLQW++  RE+ ES++CSVKKAFSS+VF+IRELHS+TL++REIL++EDLQ IL
Sbjct: 176 SLRMIKKKLQWEEDIRESTESSHCSVKKAFSSVVFMIRELHSYTLRLREILYFEDLQSIL 235

Query: 216 VRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEY 275
           VRVQ+E  ASFVWLFQQVFSHTPTLM+ +MILLANFTV+SM +NT+LA+T PP AA    
Sbjct: 236 VRVQKESQASFVWLFQQVFSHTPTLMISIMILLANFTVYSMGNNTALASTSPPPAAM--- 292

Query: 276 ASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDR 335
            S VE H+Q   KFDS++IK FS+ SS SGKTTSIGGNNGGGGK+RPIG G + DG  ++
Sbjct: 293 VSVVESHDQCNSKFDSTTIKTFSI-SSSSGKTTSIGGNNGGGGKVRPIGGGIEDDGQFNQ 351

Query: 336 VDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQM-QVTDESLDH 394
            D +RTI+PD ASQ+SS+GTT +AESV  +   EEE NLW S+V+EAS+M Q  DE +D 
Sbjct: 352 SDEYRTILPDNASQVSSYGTTPEAESVLNR--EEEETNLWKSVVEEASKMRQWGDEVMDG 409

Query: 395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRA 454
           +     +SPVTANIE DDYA+Y RTELLYQT L QEPN+ LLL NYAQFLY+VAHDYDRA
Sbjct: 410 DAFRDLISPVTANIETDDYAEYLRTELLYQTTLLQEPNNTLLLTNYAQFLYLVAHDYDRA 469

Query: 455 EEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514
           EEYFKRA+AVEPP+AE+F KYA+FLW+VR DLWAAEETFLEAISADP NSYYAANYA+FL
Sbjct: 470 EEYFKRAVAVEPPEAEAFDKYAAFLWQVRKDLWAAEETFLEAISADPGNSYYAANYAHFL 529

Query: 515 WNTGGEDTCFPLSSPDS 531
           WNTGG+DTCFPL SP++
Sbjct: 530 WNTGGDDTCFPLDSPEA 546

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518503|ref|XP_004166281.1| PREDICTED: uncharacterized protein LOC101223894 [Cucumis sativus]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 334/557 (59%), Positives = 409/557 (73%), Gaps = 44/557 (7%)

Query: 6   ANTCLQWTQRIIPQSPSSSQALASAISSP-SSKRRSRSSCSSDIGPLVCRYVQGLDRSAL 64
           A TC  W+Q   P  P+S Q L S + SP SSKRR+ +    D G LV R V  L++S L
Sbjct: 3   ATTCFHWSQPFTPHCPASPQTLTSTVLSPCSSKRRNYT----DGGSLVWRCVHRLEQSTL 58

Query: 65  FGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENE------------------ 106
           FG    K  HRSRSCE  PK +    ++RTCSASLDAF + E                  
Sbjct: 59  FGSSSTKL-HRSRSCEI-PK-QTSRGIKRTCSASLDAFSDEEFSRRIQELALRFQHSADA 115

Query: 107 NETNCRDNAVNSESESRDSRDGFVDPPWEE-----------DEIIQESIERKANSVDLPL 155
           +ET    ++ ++   + DS   FV+P W E           DE++   IER+ANS DLP+
Sbjct: 116 DETAGSSSSNDASCVNSDSLSEFVEPSWPETGHEPPDWPRPDELVPAMIERRANSFDLPV 175

Query: 156 SLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGIL 215
           SLR+IK+KLQW++  RE+ ES++CSVKKAFSS+VF+IRELHS+TL++REIL++EDLQ IL
Sbjct: 176 SLRMIKKKLQWEEDIRESTESSHCSVKKAFSSVVFMIRELHSYTLRLREILYFEDLQSIL 235

Query: 216 VRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEY 275
           VRVQ+E  ASFVWLFQQVFSHTPTLM+ +MILLANFTV+SM +NT+LA+T PP AA    
Sbjct: 236 VRVQKESQASFVWLFQQVFSHTPTLMISIMILLANFTVYSMGNNTALASTSPPPAAM--- 292

Query: 276 ASTVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDR 335
            S VE H+Q   KFDS++IK FS+ SS SGKTTSIGGNNGGGGK+RPIG G + DG  ++
Sbjct: 293 VSVVESHDQCNSKFDSTTIKTFSI-SSSSGKTTSIGGNNGGGGKVRPIGGGIEDDGQFNQ 351

Query: 336 VDHFRTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQM-QVTDESLDH 394
            D +RTI+PD ASQ+SS+GTT + ESV  +   EEE NLW S+V+EAS+M Q  DE +D 
Sbjct: 352 SDEYRTILPDNASQVSSYGTTPETESVLNR--EEEETNLWKSVVEEASKMRQWGDEVMDG 409

Query: 395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRA 454
           +     +SPVTANIE DDYA+Y RTELLYQT L QEPN+ LLL NYAQFLY+VAHDYDRA
Sbjct: 410 DAFRDLISPVTANIETDDYAEYLRTELLYQTTLLQEPNNTLLLTNYAQFLYLVAHDYDRA 469

Query: 455 EEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514
           EEYFKRA+AVEPP+AE+F KYA+FLW+VR DLWAAEETFLEAISADP NSYYAANYA+FL
Sbjct: 470 EEYFKRAVAVEPPEAEAFDKYAAFLWQVRKDLWAAEETFLEAISADPGNSYYAANYAHFL 529

Query: 515 WNTGGEDTCFPLSSPDS 531
           WNTGG+DTCFPL SP++
Sbjct: 530 WNTGGDDTCFPLDSPEA 546

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566185|ref|XP_003551315.1| PREDICTED: uncharacterized protein LOC100799508 [Glycine max]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 332/557 (59%), Positives = 407/557 (73%), Gaps = 49/557 (8%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MG+KV    +Q +Q ++P SPSSS  LASAI SPSS         S    LVCR+V    
Sbjct: 1   MGIKV----MQLSQPVLPHSPSSSHTLASAIFSPSS---------SKTRTLVCRFVH--- 44

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLDAFDENENETNCRDNAVN--- 117
           RS+LF     +   R++S E +     +  +RR CSASL+ F + E      D A+    
Sbjct: 45  RSSLFPTTTTRLLRRTKSFEQHALFTRRGNIRRACSASLEPFSDEEFAKKIEDLALKFQL 104

Query: 118 --------SESESRDSRD-----GFVDPPWEEDEIIQESIERKANSVDLPLSLRIIKRKL 164
                   ++ ES D ++      F +     +EII  +IERKANSV+LP SLRIIK+KL
Sbjct: 105 SDDATTNANDLESEDFQEISSTVNFAEEFEPPEEIIPANIERKANSVELPFSLRIIKKKL 164

Query: 165 QWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREILFYEDLQGILVRVQREMHA 224
           QW++GFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMRE+LFYEDLQGIL RVQ EMHA
Sbjct: 165 QWKEGFREAGESAYCSVKKAFSSMVFIIRELHSFTLQMREVLFYEDLQGILERVQNEMHA 224

Query: 225 SFVWLFQQVFSHTPTLMVYVMILLANFTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQ 284
           SFVWLFQQVFSHTPTLMVYVMILLANFTV+SM +N ++AA  PP  +     +  E H+Q
Sbjct: 225 SFVWLFQQVFSHTPTLMVYVMILLANFTVYSMGNNAAIAAVAPPPVS-----TVTEAHDQ 279

Query: 285 RRH----KFDSSSIKPFSVFSSRSGKTTS-IGGNNGGGGKIRPIGSGTDGDGGIDRVDHF 339
           R H      DSS+IK FSV    +GK T+ +GG NGGGGK+RP  +GTDGDG  DR  H 
Sbjct: 280 RGHIRGHNIDSSAIKTFSV---SNGKITAYVGGGNGGGGKVRPAANGTDGDGRFDRSRH- 335

Query: 340 RTIVPDGASQLSSFGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVT--DESLDHETM 397
            T+  DG +   ++ T    ESVSGQ + EEE NLWN++V+EAS+M+V+   + LD + M
Sbjct: 336 GTVFSDGGASTQAYKTGEKTESVSGQEEEEEE-NLWNAMVEEASRMEVSWRGKDLDSDVM 394

Query: 398 ERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEY 457
           +RFVSPV A+IE+DDYA+Y RTEL+YQTGL+Q+PN+ LLLANYAQFLY+VAHDYDRAEE+
Sbjct: 395 KRFVSPVMASIESDDYAEYLRTELVYQTGLSQDPNNTLLLANYAQFLYLVAHDYDRAEEF 454

Query: 458 FKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNT 517
           FKRAI VEPPDAE+++KYA+FLW+V+NDLWAAEET+LEAISADP NS+YAANYA+FLWNT
Sbjct: 455 FKRAIEVEPPDAEAYNKYATFLWKVKNDLWAAEETYLEAISADPNNSFYAANYAHFLWNT 514

Query: 518 GGEDTCFPLSSPDSSTQ 534
           GGEDTCFPLSSPD+S +
Sbjct: 515 GGEDTCFPLSSPDNSQE 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450800|ref|XP_004143150.1| PREDICTED: uncharacterized protein LOC101211174 [Cucumis sativus]

 Score =  566 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 320/578 (55%), Positives = 400/578 (69%), Gaps = 68/578 (11%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MGVKVA TCLQW+Q I+  S   SQ LAS +  PSS     +  +   G   C Y   L 
Sbjct: 1   MGVKVATTCLQWSQPIVHHSSCYSQTLASIVPYPSST----TRRNRRNGGGRCVY--SLS 54

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASL-DAFDENENETNCRDNAVNSE 119
           R  LFG QL K   RSRSC  Y KPRI+  +R  CSA + D F + E     ++ A+  +
Sbjct: 55  RPGLFGIQLTKF-QRSRSCCDY-KPRIR-TIRTACSAHMEDGFSDEEFSKQIQELALRFQ 111

Query: 120 SESRDSRDGF-------------------------------------VDPPW-------- 134
             S  +   F                                      + PW        
Sbjct: 112 VSSDVNSSHFNAVSSDSVSDSSVDHEFNTAECSLQNQIQITPPQLVSTESPWPEIYHEPS 171

Query: 135 ---EEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFI 191
              +E EII + IERKANSVDLPLSLRI+KRK+QW DG REA ESAYCSVKKAFSSMVF+
Sbjct: 172 EWTQESEIIPDDIERKANSVDLPLSLRILKRKMQWHDGIREARESAYCSVKKAFSSMVFM 231

Query: 192 IRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANF 251
           IRELHS++L++REILFYEDLQGIL RV++EMHASFVWLFQQVFSHTPTLMVYVMILLANF
Sbjct: 232 IRELHSYSLKLREILFYEDLQGILNRVEKEMHASFVWLFQQVFSHTPTLMVYVMILLANF 291

Query: 252 TVHSMASNTSLAATPPPAAAYHEYA-STVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSI 310
           TV+SM +N ++A++  P+ +  + A  + ++ NQ+  KF SS+IK FSV    SGKT SI
Sbjct: 292 TVYSMGNNLAIASSSSPSPSITQTAEESFQIQNQKPQKFHSSTIKTFSV----SGKTNSI 347

Query: 311 -GGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAE-SVSGQVDR 368
            GGN GGGGK+RPI SGTDGD G +R  ++ T++PDG SQLSS G + + E S++G + R
Sbjct: 348 GGGNGGGGGKVRPIASGTDGD-GFNRSVNYPTVMPDGTSQLSSIGASAEEETSITGGIIR 406

Query: 369 EEELNLWNSIVDEASQMQ--VTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTG 426
           EEE++LWNSI+ EAS+M+  + +E++D ET+ R VSPV ANIE+D+YA+YFRTELLYQTG
Sbjct: 407 EEEVSLWNSILKEASEMRSAMRNEAIDEETVRRLVSPVIANIESDNYAEYFRTELLYQTG 466

Query: 427 LAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDL 486
           L+Q+PN+PLLL NYAQFL +VAHDYDRAEEYFK+A+AV+PPDA++F KYA+FLWRVR DL
Sbjct: 467 LSQDPNNPLLLTNYAQFLCLVAHDYDRAEEYFKKAVAVKPPDADAFHKYATFLWRVRKDL 526

Query: 487 WAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524
           WAAEE FLE++SA+  N +YAA YA+FLW  G E+TC 
Sbjct: 527 WAAEELFLESVSAESGNPFYAAKYASFLWTNGAEETCL 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496587|ref|XP_004160172.1| PREDICTED: uncharacterized LOC101211174 [Cucumis sativus]

 Score =  566 bits (1459), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 319/578 (55%), Positives = 401/578 (69%), Gaps = 68/578 (11%)

Query: 1   MGVKVANTCLQWTQRIIPQSPSSSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLD 60
           MGVKVA TCLQW+Q I+  S   SQ LAS +  PSS     +  +   G   C Y   L 
Sbjct: 1   MGVKVATTCLQWSQPIVHHSSCYSQTLASIVPYPSST----TRRNRRDGGGRCVY--SLS 54

Query: 61  RSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTCSASLD-AFDENENETNCRDNAVNSE 119
           R  LFG QL K   RSRSC  Y KPRI+  +R  CSA+++  F + E     ++ A+  +
Sbjct: 55  RPGLFGIQLTKF-QRSRSCCDY-KPRIR-TIRTACSANMENGFSDEEFSKQIQELALRFQ 111

Query: 120 SESRDSRDGF-------------------------------------VDPPW-------- 134
             S  +   F                                      + PW        
Sbjct: 112 VSSDVNSSHFNAVTSDSVSDSSVNHEFNTAECSLQNQIQITPPQLVSTESPWPEIYHEPS 171

Query: 135 ---EEDEIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFI 191
              +E EII + IERKANSVDLPLSLRI+KRK+QW DG REA ESAYCSVKKAFSSMVF+
Sbjct: 172 EWTQESEIIPDDIERKANSVDLPLSLRILKRKMQWHDGIREARESAYCSVKKAFSSMVFM 231

Query: 192 IRELHSFTLQMREILFYEDLQGILVRVQREMHASFVWLFQQVFSHTPTLMVYVMILLANF 251
           IRELHS++L++REILFYEDLQGIL RV++EMHASFVWLFQQVFSHTPTLMVYVMILLANF
Sbjct: 232 IRELHSYSLKLREILFYEDLQGILNRVEKEMHASFVWLFQQVFSHTPTLMVYVMILLANF 291

Query: 252 TVHSMASNTSLAATPPPAAAYHEYA-STVEVHNQRRHKFDSSSIKPFSVFSSRSGKTTSI 310
           TV+SM +N ++A++  P+ +  + A  + ++ NQ+  KF SS+IK FSV    SGKT SI
Sbjct: 292 TVYSMGNNLAIASSSSPSPSITQTAEESFQIQNQKPQKFHSSTIKTFSV----SGKTNSI 347

Query: 311 -GGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAE-SVSGQVDR 368
            GGN GGGGK+RPI SGTDGD G +R  ++ T++PDG SQLSS G + + E S++G + R
Sbjct: 348 GGGNGGGGGKVRPIASGTDGD-GFNRSVNYPTVMPDGTSQLSSIGASAEEETSITGGIIR 406

Query: 369 EEELNLWNSIVDEASQMQ--VTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTG 426
           EEE++LWNSI+ EAS+M+  + +E++D ET+ R VSPV ANIE+D+YA+YFRTELLYQTG
Sbjct: 407 EEEVSLWNSILKEASEMRSAMRNEAIDEETVRRLVSPVIANIESDNYAEYFRTELLYQTG 466

Query: 427 LAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDL 486
           L+Q+PN+PLLL NYAQFL +VAHDYDRAEEYFK+A+AV+PPDA++F KYA+FLWRVR DL
Sbjct: 467 LSQDPNNPLLLTNYAQFLCLVAHDYDRAEEYFKKAVAVKPPDADAFHKYATFLWRVRKDL 526

Query: 487 WAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF 524
           WAAEE FLE++SA+  N +YAA YA+FLW  G E+TC 
Sbjct: 527 WAAEELFLESVSAESGNPFYAAKYASFLWTNGAEETCL 564

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	536
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.354	0.354	0.674	4.8e-129
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.319	0.309	0.662	4.9e-112
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.324	0.337	0.692	2.7e-107
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.192	0.355	0.388	2.4e-14
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.203	0.397	0.366	3.2e-14
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.182	0.411	0.363	1.2e-09
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.182	0.316	0.37	1.4e-09
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.190	0.334	0.349	1.9e-08

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 4.8e-129, Sum P(2) = 4.8e-129
 Identities = 137/203 (67%), Positives = 166/203 (81%)

Query:   337 DHFRTIVPDGASQLSS--FGTTRDAESVSGQVDREEELNLWNSIVDEASQMQVT--DESL 392
             + FRTI+P+G SQLSS  FG+     SVSGQ    +E  LWNS+V+EA +MQ +  D+SL
Sbjct:   341 EQFRTIIPEGVSQLSSSNFGSE---PSVSGQ----DEHRLWNSMVEEAERMQYSNIDDSL 393

Query:   393 DHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYD 452
             D ET +RFVS V A +EA++   YF+TEL+YQT L+QEPN+PLLLANYAQFLY+V++D+D
Sbjct:   394 DQETRKRFVSHVEARVEAEEDTGYFKTELMYQTELSQEPNNPLLLANYAQFLYLVSNDHD 453

Query:   453 RAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
             RAEEYFKRA+ VEP DAE+FSKYA+FLWR R+DLWAAEETFLEAI ADPTNSYYAANYAN
Sbjct:   454 RAEEYFKRAVGVEPKDAEAFSKYATFLWRARDDLWAAEETFLEAIDADPTNSYYAANYAN 513

Query:   513 FLWNTGGEDTCFPLSSPDSSTQE 535
             FLWNTGG+DTCFPL   D S ++
Sbjct:   514 FLWNTGGDDTCFPLD--DESHED 534

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 4.9e-112, Sum P(2) = 4.9e-112
 Identities = 120/181 (66%), Positives = 149/181 (82%)

Query:   351 SSFG-TTRDAE-SVSGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANI 408
             SS G T+ D++ SVSGQ    EE+ LWNSI++E ++M    E+LDHETM+  VSPV A +
Sbjct:   373 SSLGATSADSDVSVSGQ----EEIRLWNSILEETAKM----ETLDHETMKGMVSPVEARL 424

Query:   409 EADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD 468
             EA++  DYF+TELLYQTGL+QEP + LLLANYAQFLY++ HDYDRAE+YFKRA   EP D
Sbjct:   425 EAEESMDYFKTELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPAD 484

Query:   469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSS 528
             AE+ +KYA+FLWR RND+W AEET+LEAISADPTNS Y+ANYA+FLWNTGG++TCFPL +
Sbjct:   485 AEALNKYATFLWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNTGGDETCFPLDA 544

Query:   529 P 529
             P
Sbjct:   545 P 545

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 637 (229.3 bits), Expect = 2.7e-107, Sum P(3) = 2.7e-107
 Identities = 124/179 (69%), Positives = 147/179 (82%)

Query:   357 RDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADY 416
             R  +SVSG+  REEE++LWNS+V+EA QMQ  D S+D +   R VSP+TA IE DDYA+Y
Sbjct:   340 RHRDSVSGEGMREEEVSLWNSMVEEADQMQ--DSSVDRDMRLRLVSPITARIELDDYANY 397

Query:   417 FRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA 476
              RTELLY+ GLAQEP++ LLLANYAQFLY+V  D++RAE  FK+AI  E  DAE++SKYA
Sbjct:   398 TRTELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYA 457

Query:   477 SFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSPDSSTQE 535
              FLW+VRNDLWAAEE FLEAISADPTNS+YAANYANFLWNTGGE+TCFPL   + STQE
Sbjct:   458 IFLWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLWNTGGEETCFPL---EDSTQE 513

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.4e-14, P = 2.4e-14
 Identities = 40/103 (38%), Positives = 60/103 (58%)

Query:   419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF 478
             T++ Y+  +   P + + L+NYA+FL  V  DY +AEEY  RAI V P D    + YA  
Sbjct:   156 TDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAEL 215

Query:   479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
             +W++  D   AE  F +A++A P + Y  A+YA FLW+   E+
Sbjct:   216 VWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEE 258

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 3.2e-14, P = 3.2e-14
 Identities = 40/109 (36%), Positives = 57/109 (52%)

Query:   413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESF 472
             Y D  +    Y+  L   PN+ LLL NY +FLY V  D + AEEY+ RAI   P D E+ 
Sbjct:   144 YEDKSKIGDYYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEAL 203

Query:   473 SKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
             S Y   +W  + D   A+  F +A++A P +     +YA F+W    +D
Sbjct:   204 SMYGRLIWETKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEAEDDD 252

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 36/99 (36%), Positives = 54/99 (54%)

Query:   423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP-DAESFSKYASFLWR 481
             Y+  + + P D LLL+NYA+FL  V  D  +AEEY +RA+  E   D E  S Y   +W+
Sbjct:   114 YEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDLIWK 173

Query:   482 VRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520
                D   A+  + +A+ + P +    A+YA FLW+   E
Sbjct:   174 NHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDAEEE 212

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 37/100 (37%), Positives = 51/100 (51%)

Query:   423 YQTGLAQE-PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
             Y  G+ +E P  PLLL NYA+FL     D   AEEY+ +   VEP D  + + Y   + +
Sbjct:   124 YYKGMLEEYPLHPLLLKNYAKFLEYKG-DLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182

Query:   482 VRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
             +  D   A   F  A+ A P +S   A YA+FLW    +D
Sbjct:   183 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADD 222

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 36/103 (34%), Positives = 50/103 (48%)

Query:   419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF 478
             T+  Y+  +   P + LL  NYA+FL  V  D  +AEEY +RAI     D    S YA  
Sbjct:   165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224

Query:   479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
             +     D   A   + +A+   P + Y  A+YA FLW+   ED
Sbjct:   225 ILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVD-ED 266


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.131   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      536       450   0.00092  118 3  11 22  0.39    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  302 KB (2156 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  38.09u 0.19s 38.28t   Elapsed:  00:00:01
  Total cpu time:  38.10u 0.19s 38.29t   Elapsed:  00:00:01
  Start:  Thu May  9 18:32:31 2013   End:  Thu May  9 18:32:32 2013

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_I000643 hypothetical protein (545 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	536
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-04
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	1e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.001
PRK11447	1157	PRK11447, PRK11447, cellulose synthase subunit Bcs	0.001

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
           DY      Y+  L  +P++     N A   Y     Y+ A E +++A+ ++P +A+++  
Sbjct: 15  DYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYN 73

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPT 502
                ++       A E + +A+  DP 
Sbjct: 74  LGLAYYK-LGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE 491
           ++   L N          DYD A E +++A+ ++P +AE++   A    ++  D   A E
Sbjct: 1   DNAEALKNLGN-ALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALE 59

Query: 492 TFLEAISADP 501
              +A+  DP
Sbjct: 60  DLEKALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 444 LYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503
             + A DYD A    + A+A  P  AE+       L R +  L  A      A++ADP +
Sbjct: 6   AALRAGDYDEALAALEAALARYPLAAEALLLLGEALLR-QGRLAEAAALLRAALAADPDD 64

Query: 504 S 504
            
Sbjct: 65  P 65

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 444 LYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN 503
           LY    DYD A EY+++A+ ++P +A+++   A+           A E + +A+  DP N
Sbjct: 9   LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAY-YKLGKYEEALEDYEKALELDPDN 67

Query: 504 SYYAANYANFLWNTG 518
           +    N     +  G
Sbjct: 68  AKAYYNLGLAYYKLG 82

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP 466
            Y+  L  +P++     N A     +  DY+ A E  ++A+ ++P
Sbjct: 25  AYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 45.6 bits (106), Expect = 3e-05
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 2/106 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQF--LYIVAHDYDRAEEYFKRAIAVEPPDAESF 472
           DY     LY+  L  +P    L         L      Y+ A E  ++A+ + P D    
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204

Query: 473 SKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
                 L+        A E + +A+  DP N+    N A  L   G
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.8 bits (104), Expect = 6e-05
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 420 ELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
            L     L   PN    L N    L      Y+ A E  ++A+A++P    + +  A   
Sbjct: 81  LLEKALELELLPNLAEALLNLGL-LLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
                D   A E + +A+  DP  +  A     
Sbjct: 140 LYELGDYEEALELYEKALELDPELNELAEALLA 172

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 1/101 (0%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
            Y     L +  L   P+D          LY+    Y+ A EY+++A+ ++P +AE+   
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW 515
            A  L         A E   +A+  DP            L 
Sbjct: 242 LA-LLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLA 281

Length = 291

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)

Query: 418 RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA----VEPPDA-ESF 472
           + E  ++  L   PN+  +L NY  FL      Y++A + F++AI      +P  + E+ 
Sbjct: 83  KAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK-YEQAMQQFEQAIEDPLYPQPARSLEN- 140

Query: 473 SKYASFLWRVRNDLWAAEETFLEAISADPTNS 504
              A        D   AE+    A+  DP   
Sbjct: 141 ---AGLCALKAGDFDKAEKYLTRALQIDPQRP 169

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
            Y     L +  LA +P+  L  A  A        DY+ A E +++A+ ++P   E    
Sbjct: 110 KYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEA 169

Query: 475 YASF--LWRVRNDLWAAEETFLEAISADPTNSYYA-ANYANFLWNTG 518
             +   L         A E   +A+  +P +   A  N        G
Sbjct: 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216

Length = 291

>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%)

Query: 424 QTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR 483
           Q  +   P D   L    Q  Y    D  RA   F++A+A++ P + +  K+ S L   R
Sbjct: 293 QQAVRANPKDSEALGALGQ-AYSQQGDRARAVAQFEKALALD-PHSSNRDKWESLLKVNR 350

Query: 484 --------------NDLWAAEETFLEAISADPTNSY 505
                         N+L  AE  + +A   D T+SY
Sbjct: 351 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSY 386

Length = 1157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	536
PRK15359	144	type III secretion system chaperone protein SscB;	99.52
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.46
PRK15359	144	type III secretion system chaperone protein SscB;	99.41
KOG0553	304	consensus TPR repeat-containing protein [General f	99.38
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.35
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.33
PRK12370	553	invasion protein regulator; Provisional	99.32
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.31
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.3
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.29
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.29
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.27
PRK11189	296	lipoprotein NlpI; Provisional	99.27
PRK12370	553	invasion protein regulator; Provisional	99.27
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.21
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.21
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.21
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.18
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.17
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.17
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.15
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.15
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.14
PRK11189	296	lipoprotein NlpI; Provisional	99.13
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.09
KOG1126	638	consensus DNA-binding cell division cycle control	99.09
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.06
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.05
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.05
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.03
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.02
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.02
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.02
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.95
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.94
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.89
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.88
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.87
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.87
KOG1125	579	consensus TPR repeat-containing protein [General f	98.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.86
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.83
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.82
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.82
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.78
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.77
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.77
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.76
PLN02789	320	farnesyltranstransferase	98.76
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.75
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.75
KOG1125	579	consensus TPR repeat-containing protein [General f	98.72
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.72
PLN02789	320	farnesyltranstransferase	98.71
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.69
PRK11906	458	transcriptional regulator; Provisional	98.68
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.68
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.67
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.64
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.64
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.62
PRK10803	263	tol-pal system protein YbgF; Provisional	98.6
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.6
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.58
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.58
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.57
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.57
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.56
PF13371	73	TPR_9: Tetratricopeptide repeat	98.55
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.54
KOG2076	895	consensus RNA polymerase III transcription factor	98.51
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.51
PRK14574	822	hmsH outer membrane protein; Provisional	98.5
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.49
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.47
PRK11906	458	transcriptional regulator; Provisional	98.43
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.4
PF13371	73	TPR_9: Tetratricopeptide repeat	98.4
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.38
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.37
PRK14574	822	hmsH outer membrane protein; Provisional	98.36
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.35
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.35
KOG2003	840	consensus TPR repeat-containing protein [General f	98.31
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.3
KOG1129	478	consensus TPR repeat-containing protein [General f	98.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.24
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.24
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.24
PRK15331	165	chaperone protein SicA; Provisional	98.19
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.19
PF12688	120	TPR_5: Tetratrico peptide repeat	98.18
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.18
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.18
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.16
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.16
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.15
PRK10803	263	tol-pal system protein YbgF; Provisional	98.14
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.14
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.13
KOG0553	304	consensus TPR repeat-containing protein [General f	98.11
PF12688	120	TPR_5: Tetratrico peptide repeat	98.08
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.07
PRK15331	165	chaperone protein SicA; Provisional	98.07
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.05
KOG1129	478	consensus TPR repeat-containing protein [General f	98.04
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.01
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.99
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.97
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	97.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.95
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.92
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.9
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.89
PF13428	44	TPR_14: Tetratricopeptide repeat	97.87
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.86
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.86
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.8
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.76
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.76
PF13431	34	TPR_17: Tetratricopeptide repeat	97.76
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.74
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.72
PF13431	34	TPR_17: Tetratricopeptide repeat	97.72
KOG4555	175	consensus TPR repeat-containing protein [Function	97.71
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.71
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.7
KOG4234	271	consensus TPR repeat-containing protein [General f	97.67
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.67
KOG2076	895	consensus RNA polymerase III transcription factor	97.65
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.64
KOG2003	840	consensus TPR repeat-containing protein [General f	97.64
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.61
PF13428	44	TPR_14: Tetratricopeptide repeat	97.61
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.59
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.58
PF13512	142	TPR_18: Tetratricopeptide repeat	97.54
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.53
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.52
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.52
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.46
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.45
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.44
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.44
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.39
PLN03077	857	Protein ECB2; Provisional	97.38
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.37
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.32
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.32
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.3
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.3
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.22
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.2
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.18
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.13
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.12
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.1
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.1
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.99
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.98
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.98
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.96
KOG4555	175	consensus TPR repeat-containing protein [Function	96.91
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.9
PRK04841	903	transcriptional regulator MalT; Provisional	96.8
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.79
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.76
PF13512	142	TPR_18: Tetratricopeptide repeat	96.74
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.72
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.62
PLN03218	1060	maturation of RBCL 1; Provisional	96.59
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.59
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.56
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.53
PRK04841	903	transcriptional regulator MalT; Provisional	96.49
PLN03218	1060	maturation of RBCL 1; Provisional	96.47
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.46
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.43
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.37
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.33
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.31
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.24
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.21
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.2
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.2
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.18
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.13
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.08
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.07
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	95.96
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.95
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.87
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.85
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.83
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.63
KOG1310	758	consensus WD40 repeat protein [General function pr	95.52
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.3
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.26
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.19
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.18
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.17
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.15
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.1
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.01
PLN03077	857	Protein ECB2; Provisional	95.0
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.93
KOG4234	271	consensus TPR repeat-containing protein [General f	94.93
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.87
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.87
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.84
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.78
KOG3785	557	consensus Uncharacterized conserved protein [Funct	94.76
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.73
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.72
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.66
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.45
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.4
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.36
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	94.35
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.34
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.29
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.2
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.1
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.91
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.9
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.87
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.85
COG4700	251	Uncharacterized protein conserved in bacteria cont	93.83
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.81
PRK10941	269	hypothetical protein; Provisional	93.67
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.62
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.61
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.49
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	93.33
PF03704	146	BTAD: Bacterial transcriptional activator domain;	93.26
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.04
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.03
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.98
KOG3364	149	consensus Membrane protein involved in organellar	92.87
PRK10941	269	hypothetical protein; Provisional	92.74
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	92.68
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	92.67
KOG2471	696	consensus TPR repeat-containing protein [General f	92.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.49
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.89
KOG4340	459	consensus Uncharacterized conserved protein [Funct	91.63
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.58
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.53
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	91.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	90.79
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	90.74
KOG1586	288	consensus Protein required for fusion of vesicles	90.4
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.24
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.13
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.06
KOG1941	518	consensus Acetylcholine receptor-associated protei	89.97
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	89.93
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	89.92
KOG1258	577	consensus mRNA processing protein [RNA processing	89.67
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.61
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	89.57
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.41
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	87.93
KOG2471	696	consensus TPR repeat-containing protein [General f	87.67
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	87.4
KOG2300	629	consensus Uncharacterized conserved protein [Funct	86.92
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.59
KOG2047	835	consensus mRNA splicing factor [RNA processing and	86.52
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	86.3
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	86.26
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	85.93
KOG1585	308	consensus Protein required for fusion of vesicles	85.84
KOG0529	421	consensus Protein geranylgeranyltransferase type I	85.33
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	84.93
KOG1258	577	consensus mRNA processing protein [RNA processing	84.49
KOG4814	872	consensus Uncharacterized conserved protein [Funct	84.33
KOG4507	886	consensus Uncharacterized conserved protein, conta	83.15
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	82.78
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	82.4
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	82.35
KOG4014	248	consensus Uncharacterized conserved protein (conta	81.66
KOG1310	758	consensus WD40 repeat protein [General function pr	81.63
COG5191	435	Uncharacterized conserved protein, contains HAT (H	81.33
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.2
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.74

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.52  E-value=1.5e-13  Score=125.13  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|..+|++++.++|++..++.++|.++. ..|++++|+.+|++|++++|+++.+++++|.++.. .|++++|+..|
T Consensus        38 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g~~~eAi~~~  115 (144)
T PRK15359         38 GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MGEPGLAREAF  115 (144)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            89999999999999999999999999999888 69999999999999999999999999999998876 47999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      ++|++++|+++.++.+.+.++..++
T Consensus       116 ~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        116 QTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHH
Confidence            9999999999999999999886543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.46  E-value=7e-13  Score=127.32  Aligned_cols=109  Identities=15%  Similarity=0.129  Sum_probs=100.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND--LWAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD--~eEAe  490 (536)
                      .++.++++..|+++++.+|+|+.+|.++|.++. ..|++++|+.+|++|++++|+|++++.++|.+++...|+  +++|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            368899999999999999999999999999877 699999999999999999999999999999987555556  59999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +.+++|++++|+++.++.++|..+.+.|++++
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~  162 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQ  162 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999999998754

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.41  E-value=1.3e-12  Score=118.94  Aligned_cols=100  Identities=15%  Similarity=0.095  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385          419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAIS  498 (536)
Q Consensus       419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALe  498 (536)
                      -+.+|++|++++|++   +.++|..+. ..|++++|..+|++++.++|++..++.++|.++... |++++|+.+|++|++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~y~~Al~   86 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML-KEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHh
Confidence            467999999999986   557788887 689999999999999999999999999999988875 699999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          499 ADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       499 LDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|+++.+++++|.++..+|+.+++
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eA  111 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLA  111 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999987543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.38  E-value=2.3e-12  Score=131.60  Aligned_cols=106  Identities=17%  Similarity=0.250  Sum_probs=100.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|.+|+..|.+||+++|+|+..|.|.|.+|. ..|.++.|++..+.||.+||.+..+|..||.+++- .|++++|++.|
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~ay  172 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIEAY  172 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHHHH
Confidence            79999999999999999999999999999988 69999999999999999999999999999998886 47999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +|||++||+|..+..+|..+-..+++..
T Consensus       173 kKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  173 KKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999888777665

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.35  E-value=1.5e-12  Score=142.55  Aligned_cols=107  Identities=19%  Similarity=0.201  Sum_probs=72.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |..+-|+..|++||+++|+.++++.|+|.++- ..|+.++|+.||.+||++.|+++++++|||.++.++ |.+++|..+|
T Consensus       300 G~ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~-~~~e~A~~ly  377 (966)
T KOG4626|consen  300 GLLDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ-GKIEEATRLY  377 (966)
T ss_pred             ccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-ccchHHHHHH
Confidence            56666666666666666666666666666665 356666666666666666666666666666666664 4666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      ++|++..|.-+.++.|+|.+|.+.|..++
T Consensus       378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~  406 (966)
T KOG4626|consen  378 LKALEVFPEFAAAHNNLASIYKQQGNLDD  406 (966)
T ss_pred             HHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence            66666666666666666666666666554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.33  E-value=1e-11  Score=108.35  Aligned_cols=90  Identities=20%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++++..+|+++.++.++|.+++ ..|++++|+++|+++++++|+++..++++|.+++.. |++++|+.+|
T Consensus        31 ~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~  108 (135)
T TIGR02552        31 GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL-GEPESALKAL  108 (135)
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            66777777777777777777777777776665 467777777777777777777777777777666553 5677777777


Q ss_pred             HHHHHhCCCCHH
Q 009385          494 LEAISADPTNSY  505 (536)
Q Consensus       494 eKALeLDPdNpe  505 (536)
                      +++++++|++..
T Consensus       109 ~~al~~~p~~~~  120 (135)
T TIGR02552       109 DLAIEICGENPE  120 (135)
T ss_pred             HHHHHhccccch
Confidence            777777776665

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=1.2e-11  Score=134.55  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=93.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.++++|++++|+++.++..+|.++. ..|++++|+.+|++|++++|+++.+++.+|.++.. .|++++|+.+|
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~  395 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTI  395 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            56889999999999999999999999998777 58999999999999999999999999999988876 46899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|++++|+++.++..++.+++..|+++++
T Consensus       396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA  425 (553)
T PRK12370        396 NECLKLDPTRAAAGITKLWITYYHTGIDDA  425 (553)
T ss_pred             HHHHhcCCCChhhHHHHHHHHHhccCHHHH
Confidence            999999999888777777777788886543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.31  E-value=3e-11  Score=125.53  Aligned_cols=102  Identities=18%  Similarity=0.226  Sum_probs=95.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|++|+.+|.+||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.+++++|.+++.. |++++|+.+|
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l-g~~~eA~~~~   93 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL-EEYQTAKAAL   93 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence            89999999999999999999999999999887 699999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          494 LEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~el  517 (536)
                      ++|++++|+++.+...++.+...+
T Consensus        94 ~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         94 EKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999988888876555

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.30  E-value=1e-11  Score=136.06  Aligned_cols=109  Identities=20%  Similarity=0.191  Sum_probs=92.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      |.|+..+|+++|.+||.+.|+++++++|||.++. .+|.+++|...|++|++..|+.+.+++|||.+|.+ +|++++|+.
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~-E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~  409 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR-EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QGNLDDAIM  409 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cccHHHHHH
Confidence            5588888888888888888888888888888877 47888888888888888888888888888877654 568888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +|++||+++|..++++.|+|+.|-++|+...
T Consensus       410 ~YkealrI~P~fAda~~NmGnt~ke~g~v~~  440 (966)
T KOG4626|consen  410 CYKEALRIKPTFADALSNMGNTYKEMGDVSA  440 (966)
T ss_pred             HHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence            8888888888888888888888888887654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.29  E-value=2.7e-11  Score=132.68  Aligned_cols=111  Identities=15%  Similarity=0.235  Sum_probs=88.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+++++|+.+|+++++++|+++.+++++|.+++ ..|++++|+.+|+++++++|++..++.++|.+++. .|++++|+.+
T Consensus       378 ~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~  455 (615)
T TIGR00990       378 LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EGSIASSMAT  455 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CCCHHHHHHH
Confidence            367888888888888888888888888887776 57888888888888888888888888888877765 4578888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      |+++++.+|+++.++.++|.++..+|+.+++..
T Consensus       456 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~  488 (615)
T TIGR00990       456 FRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE  488 (615)
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence            888888888888888888888888887766554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.29  E-value=1.7e-11  Score=121.89  Aligned_cols=103  Identities=20%  Similarity=0.324  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++..|..-+++||+.||++..+|..+|.++. ..|+.+.|.+.|++||.++|++.++++|||.||+.+ |++++|..+|
T Consensus        49 gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q-g~~~eA~q~F  126 (250)
T COG3063          49 GDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ-GRPEEAMQQF  126 (250)
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC-CChHHHHHHH
Confidence            56666666666666666666666666654433 456666666666666666666666666666666553 3566666666


Q ss_pred             HHHHHhCCCCHH---HHHHHHHHHHHcCC
Q 009385          494 LEAISADPTNSY---YAANYANFLWNTGG  519 (536)
Q Consensus       494 eKALeLDPdNpe---al~NyA~~L~elGr  519 (536)
                      ++|++ +|..++   .+-|+|.+-.+.|+
T Consensus       127 ~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq  154 (250)
T COG3063         127 ERALA-DPAYGEPSDTLENLGLCALKAGQ  154 (250)
T ss_pred             HHHHh-CCCCCCcchhhhhhHHHHhhcCC
Confidence            65555 344332   34555555555554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.27  E-value=4.1e-11  Score=131.24  Aligned_cols=110  Identities=15%  Similarity=0.221  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+..|+++++++|++..++.++|.++. ..|++++|+.+|+++++++|+++.+++.+|.+++. .|++++|+.+|
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~  422 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDY  422 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            89999999999999999999999999999887 68999999999999999999999999999998876 47999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      ++|++++|++..++.++|.++..+|+.++++.
T Consensus       423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~  454 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA  454 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999998765543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.27  E-value=5.4e-11  Score=119.95  Aligned_cols=91  Identities=18%  Similarity=0.221  Sum_probs=86.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|++++|+..|++|++++|+++.+|+++|.++. ..|++++|+..|+++++++|++..++.++|.+++.. |++++|++.
T Consensus        77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA~~~  154 (296)
T PRK11189         77 LGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-GRYELAQDD  154 (296)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence            389999999999999999999999999998877 699999999999999999999999999999988874 699999999


Q ss_pred             HHHHHHhCCCCHH
Q 009385          493 FLEAISADPTNSY  505 (536)
Q Consensus       493 feKALeLDPdNpe  505 (536)
                      |+++++++|+++.
T Consensus       155 ~~~al~~~P~~~~  167 (296)
T PRK11189        155 LLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHhCCCCHH
Confidence            9999999999984

>PRK12370 invasion protein regulator; Provisional

Probab=99.27  E-value=2.4e-11  Score=132.31  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=98.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--------VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND  485 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--------~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD  485 (536)
                      +++++|+.+|++|++++|+++.+|.++|.++..        ..+++++|+.++++|++++|+++.++..+|.++.. .|+
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccC
Confidence            578899999999999999999999999976542        12458999999999999999999999999998876 469


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          486 LWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       486 ~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++|+.+|++|++++|+++.+++++|.++...|+.+++
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eA  391 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEA  391 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999997643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.5e-11  Score=135.22  Aligned_cols=111  Identities=14%  Similarity=0.195  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      .+|++|..+|++||..+|+|..+|+++|.+|. ++++++.|+-+|++|++++|.|...+..+|.++.. .|+.++|+.+|
T Consensus       469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~AL~~~  546 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKALQLY  546 (638)
T ss_pred             HHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHHHHHH
Confidence            69999999999999999999999999998887 69999999999999999999999999999998876 56999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccccCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCFPL  526 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~clpl  526 (536)
                      ++|+.+||.|+...++.|.+|+.++++++|+-.
T Consensus       547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~  579 (638)
T KOG1126|consen  547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQE  579 (638)
T ss_pred             HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence            999999999999999999999999999877643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.23  E-value=7.5e-11  Score=137.19  Aligned_cols=105  Identities=14%  Similarity=0.099  Sum_probs=100.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|++|++++|+ +.++.++|.++. ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+++|
T Consensus       590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~-G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS-GDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence            8999999999999999996 999999998887 699999999999999999999999999999988874 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ++|++++|+++.++.++|.++..+|+.+
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999999999864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.21  E-value=2.3e-10  Score=103.28  Aligned_cols=110  Identities=23%  Similarity=0.325  Sum_probs=99.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--PddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .+++++|+.+|+++++.+|++..++.++|.++. ..|++++|+++|++++...  |.+...+.++|.++... |++++|+
T Consensus        78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~  155 (234)
T TIGR02521        78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA-GDFDKAE  155 (234)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc-CCHHHHH
Confidence            389999999999999999999999999998887 6899999999999999864  56678899999988764 6999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      .+|+++++.+|+++..+..+|.++...|+.+++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       156 KYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999987664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.21  E-value=1.5e-10  Score=100.92  Aligned_cols=101  Identities=18%  Similarity=0.176  Sum_probs=94.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 009385          421 LLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISAD  500 (536)
Q Consensus       421 e~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLD  500 (536)
                      +.|++++.++|++..+++.+|..++ ..|++++|..+|++++.++|+++.++.++|.++... |++++|+.+|+++++++
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQML-KEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcC
Confidence            4789999999999999999998888 689999999999999999999999999999998875 59999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCccc
Q 009385          501 PTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       501 PdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |+++..++++|.++...|+.+.+
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999997665

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.21  E-value=2.4e-10  Score=103.16  Aligned_cols=111  Identities=17%  Similarity=0.199  Sum_probs=98.5

Q ss_pred             cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          413 YADYFRTELLYQTGLAQE--PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLd--Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .|++++|+.+|++++...  |.....+.++|.+++ ..|++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~  189 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL-RGQYKDAR  189 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-cCCHHHHH
Confidence            379999999999999864  567788999998877 68999999999999999999999999999998876 46999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      .++++++++.|+++..+..++.++...|+.+++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  224 (234)
T TIGR02521       190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR  224 (234)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999999998899999999998776543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.18  E-value=1.5e-10  Score=115.17  Aligned_cols=106  Identities=21%  Similarity=0.270  Sum_probs=97.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      |+.+.|.+.|++||.++|++.++++|||.+|+ .+|++++|..+|++|+..  .|..++.+-|+|.+.++. |+.+.|++
T Consensus        83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-gq~~~A~~  160 (250)
T COG3063          83 GENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-GQFDQAEE  160 (250)
T ss_pred             CChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-CCchhHHH
Confidence            89999999999999999999999999999999 699999999999999973  245568899999888764 69999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +|++++++||+++.....++..+++.|++-
T Consensus       161 ~l~raL~~dp~~~~~~l~~a~~~~~~~~y~  190 (250)
T COG3063         161 YLKRALELDPQFPPALLELARLHYKAGDYA  190 (250)
T ss_pred             HHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence            999999999999999999999999999863

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.17  E-value=2.1e-10  Score=129.31  Aligned_cols=109  Identities=8%  Similarity=-0.072  Sum_probs=103.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|.+++|+.+++++++++|++..++.++|.+|. ..+++++|...+++++..+|+++.+++.+|.+|.+. |++++|+++
T Consensus        99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~-g~~~~A~~~  176 (694)
T PRK15179         99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEI-GQSEQADAC  176 (694)
T ss_pred             cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-cchHHHHHH
Confidence            389999999999999999999999999999998 689999999999999999999999999999988775 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |+++++.+|+++.++.++|+.|..+|+.+++
T Consensus       177 y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        177 FERLSRQHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999987653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.17  E-value=7.8e-11  Score=116.06  Aligned_cols=113  Identities=25%  Similarity=0.347  Sum_probs=90.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|+.++|+.+|++||+++|+|+.++..++.++. ..|+++++.+.+++..+..|+|+..+..+|.++... |++++|..+
T Consensus       159 ~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l-g~~~~Al~~  236 (280)
T PF13429_consen  159 LGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL-GRYEEALEY  236 (280)
T ss_dssp             CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH-T-HHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc-ccccccccc
Confidence            489999999999999999999999999998877 589999999999999999999999999999988875 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTCFPLS  527 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~clpl~  527 (536)
                      |+++++.+|+|+.++.+||.+|...|+.++++.+.
T Consensus       237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~  271 (280)
T PF13429_consen  237 LEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR  271 (280)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999998887653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.15  E-value=3.4e-10  Score=108.85  Aligned_cols=91  Identities=21%  Similarity=0.266  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD--YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD--~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      +++++|+.+|++|++++|+++.++.+||.+++...|+  +++|.+.|+++++++|+|+.+++++|..+.+ .|++++|+.
T Consensus        87 g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g~~~~Ai~  165 (198)
T PRK10370         87 NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QADYAQAIE  165 (198)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cCCHHHHHH
Confidence            8999999999999999999999999999976535676  5999999999999999999999999998887 579999999


Q ss_pred             HHHHHHHhCCCCHH
Q 009385          492 TFLEAISADPTNSY  505 (536)
Q Consensus       492 ~feKALeLDPdNpe  505 (536)
                      +|+++++++|.+..
T Consensus       166 ~~~~aL~l~~~~~~  179 (198)
T PRK10370        166 LWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHhhCCCCcc
Confidence            99999999987654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.15  E-value=2.9e-10  Score=126.75  Aligned_cols=107  Identities=19%  Similarity=0.213  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDR----AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~de----AEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      |++++|+..|+++++++|+++.+++++|.++. ..|++++    |+.+|+++++++|+++.++.++|.++... |++++|
T Consensus       226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g~~~eA  303 (656)
T PRK15174        226 GKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT-GQNEKA  303 (656)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHH
Confidence            67777777777777777777777777776666 4666664    67777777777777777777777666653 567777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +.+|+++++++|+++.++.++|.++...|+.++
T Consensus       304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e  336 (656)
T PRK15174        304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTA  336 (656)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            777777777777777777777777777776554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.14  E-value=2.2e-10  Score=90.18  Aligned_cols=68  Identities=29%  Similarity=0.494  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 009385          432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN-DLWAAEETFLEAISADP  501 (536)
Q Consensus       432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G-D~eEAee~feKALeLDP  501 (536)
                      +++.+|.++|..++ ..|++++|+.+|++||+++|+++.+++++|.+++.. | ++++|+++|++|++++|
T Consensus         1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-GKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHcCc
Confidence            46889999999988 699999999999999999999999999999998875 5 79999999999999998

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.13  E-value=5e-10  Score=112.96  Aligned_cols=109  Identities=19%  Similarity=0.133  Sum_probs=97.1

Q ss_pred             CCHHHHHHHHHHHHHh---CCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQ---EPN-DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeL---dPd-n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      ...+.++..+.++|..   +|. .+..|+++|.++. ..|++++|+..|++|++++|+++.+++++|.++.. .|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            5778899999999964   333 3778999998877 68999999999999999999999999999998876 5799999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      ++.|++|++++|+++.++.++|.++...|+.+++.
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999999999999999876553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.09  E-value=9.4e-10  Score=118.38  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|+++++.+|+++.++.++|.++. ..|+ ++|+.++++++.+.|+++..+..+|.++.. .|++++|+.+|
T Consensus       784 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~  860 (899)
T TIGR02917       784 KDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-KGEADRALPLL  860 (899)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            67777777777777777777777777776665 4666 667777777777777777777777777665 35788888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|++++|.++.++.+++.+|+..|+.+++
T Consensus       861 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  890 (899)
T TIGR02917       861 RKAVNIAPEAAAIRYHLALALLATGRKAEA  890 (899)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888888888888876554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=7.7e-11  Score=129.73  Aligned_cols=110  Identities=15%  Similarity=0.244  Sum_probs=101.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++++.|+++|+||+.+||++..+|.-+|.=+. ...++|+|..+|++||.++|.|-.||+.+|.++.++ ++++.|+-+|
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-ek~e~Ae~~f  512 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-EKLEFAEFHF  512 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-chhhHHHHHH
Confidence            69999999999999999999999999996544 578999999999999999999999999999999875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      ++|++++|.|..+...+|.++.++|+.|+++-
T Consensus       513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~  544 (638)
T KOG1126|consen  513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQ  544 (638)
T ss_pred             HhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence            99999999999999999999999998776553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.06  E-value=1.5e-09  Score=127.77  Aligned_cols=110  Identities=18%  Similarity=0.300  Sum_probs=89.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLW------------  480 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~------------  480 (536)
                      .+++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|++..++..++.++.            
T Consensus       364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~  442 (1157)
T PRK11447        364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA  442 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            378888888899999888888888888888777 5888888999999998888888888776665431            


Q ss_pred             -----------------------------HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          481 -----------------------------RVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       481 -----------------------------e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                                                   ...|++++|+++|++|++++|+++.+++++|.+|...|+.+++
T Consensus       443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A  514 (1157)
T PRK11447        443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA  514 (1157)
T ss_pred             hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                                         1246888888888888888888888888888888888887544

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.05  E-value=8.4e-10  Score=128.55  Aligned_cols=106  Identities=16%  Similarity=0.060  Sum_probs=97.9

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      ..|++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.+++++|.++.. .|++++|+.
T Consensus       621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-lGd~~eA~~  698 (987)
T PRK09782        621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-LDDMAATQH  698 (987)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHH
Confidence            3489999999999999999999999999998888 68999999999999999999999999999998876 579999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      +|++|++++|+++.+...+|.++.....
T Consensus       699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~  726 (987)
T PRK09782        699 YARLVIDDIDNQALITPLTPEQNQQRFN  726 (987)
T ss_pred             HHHHHHhcCCCCchhhhhhhHHHHHHHH
Confidence            9999999999999998888888766553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.05  E-value=2.8e-09  Score=80.85  Aligned_cols=87  Identities=22%  Similarity=0.404  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+..|+++++..|++..++.++|.++. ..+++++|+.+|++++...|.+..++..+|.++... |++++|..++
T Consensus        14 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~   91 (100)
T cd00189          14 GDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL-GKYEEALEAY   91 (100)
T ss_pred             hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH-HhHHHHHHHH
Confidence            78999999999999999999999999998877 589999999999999999999999999999888765 5899999999


Q ss_pred             HHHHHhCCC
Q 009385          494 LEAISADPT  502 (536)
Q Consensus       494 eKALeLDPd  502 (536)
                      +++++++|+
T Consensus        92 ~~~~~~~~~  100 (100)
T cd00189          92 EKALELDPN  100 (100)
T ss_pred             HHHHccCCC
Confidence            999998874

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.03  E-value=2e-09  Score=120.17  Aligned_cols=109  Identities=16%  Similarity=0.166  Sum_probs=98.8

Q ss_pred             CCHH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYF----RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdye----eAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      |+++    +|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++.. .|++++|
T Consensus       260 G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~-~G~~~eA  337 (656)
T PRK15174        260 GRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQ-VGQYTAA  337 (656)
T ss_pred             CCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            5666    4899999999999999999999999888 68999999999999999999999999999998876 4799999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      ++.|+++++.+|+++.++..+|.+|...|+.+++.
T Consensus       338 ~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~  372 (656)
T PRK15174        338 SDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE  372 (656)
T ss_pred             HHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999888888899999999876543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.02  E-value=4e-09  Score=99.73  Aligned_cols=110  Identities=8%  Similarity=0.008  Sum_probs=91.7

Q ss_pred             ccc-HHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 009385          391 SLD-HETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA  469 (536)
Q Consensus       391 ~lD-~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda  469 (536)
                      .++ ++.+..+-+.. +.+  -..|++++|+..|+-+..+||.+...|+|||.++. .+|++++|+.+|.+|+.++|+|+
T Consensus        28 ~~~~~~~l~~lY~~A-~~l--y~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp  103 (157)
T PRK15363         28 DDDVTQPLNTLYRYA-MQL--MEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAP  103 (157)
T ss_pred             CCChHHHHHHHHHHH-HHH--HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCc
Confidence            445 56666444322 122  13499999999999999999999999999998766 79999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385          470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY  505 (536)
Q Consensus       470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe  505 (536)
                      .++.++|.++... |+.++|++.|+.|+..--.+++
T Consensus       104 ~~~~~ag~c~L~l-G~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        104 QAPWAAAECYLAC-DNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             hHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhccChh
Confidence            9999999988875 6999999999999998744444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.02  E-value=2.5e-09  Score=107.64  Aligned_cols=116  Identities=16%  Similarity=0.141  Sum_probs=106.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|+|.+|+..+++|..++|+|.++|..+|.+|- ..|+++.|...|.+|+++.|+++.+++|+|..++. +||++.|+.+
T Consensus       113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-~gd~~~A~~l  190 (257)
T COG5010         113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-RGDLEDAETL  190 (257)
T ss_pred             hcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-cCCHHHHHHH
Confidence            389999999999999999999999999998877 69999999999999999999999999999987764 6899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCCCCC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSPD  530 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~clpl~~~~  530 (536)
                      +.+|...-+.+..+..|++.+....|+.+.+-.+.+++
T Consensus       191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            99999999999999999999999999987666655544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.02  E-value=1.7e-09  Score=102.16  Aligned_cols=95  Identities=11%  Similarity=-0.008  Sum_probs=87.0

Q ss_pred             HHHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385          425 TGLAQE-PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN  503 (536)
Q Consensus       425 KALeLd-Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN  503 (536)
                      ....++ ++.-+.++.||..++ ..|++++|++.|+-+..+||.++..|++||.++.. +|++++|++.|.+|+.++|+|
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence            345567 888899999999888 59999999999999999999999999999988765 579999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCc
Q 009385          504 SYYAANYANFLWNTGGED  521 (536)
Q Consensus       504 peal~NyA~~L~elGr~E  521 (536)
                      |..+.|.|.++...|+.+
T Consensus       103 p~~~~~ag~c~L~lG~~~  120 (157)
T PRK15363        103 PQAPWAAAECYLACDNVC  120 (157)
T ss_pred             chHHHHHHHHHHHcCCHH
Confidence            999999999999999864

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.00  E-value=7.8e-09  Score=86.74  Aligned_cols=92  Identities=21%  Similarity=0.220  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e  487 (536)
                      +++++|+..|.+++..+|++   +.+++.+|.+++ ..|++++|+.+|++++..+|++   +.++..+|.++... ++++
T Consensus        16 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~   93 (119)
T TIGR02795        16 GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL-GDKE   93 (119)
T ss_pred             CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh-CChH
Confidence            89999999999999999987   578999999888 6899999999999999999986   67899999988764 6999


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 009385          488 AAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       488 EAee~feKALeLDPdNpeal  507 (536)
                      +|+.+|+++++..|+++.+.
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        94 KAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHHHHHHCcCChhHH
Confidence            99999999999999998754

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.98  E-value=1.5e-09  Score=84.85  Aligned_cols=64  Identities=27%  Similarity=0.417  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 009385          439 NYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS  504 (536)
Q Consensus       439 NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp  504 (536)
                      .+|..++ ..|++++|+++|+++++.+|++++++..+|.+++.. |++++|+.+|+++++++|+||
T Consensus         2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQ-GRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCC
Confidence            5787777 699999999999999999999999999999999874 699999999999999999986

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.98  E-value=5.4e-09  Score=112.62  Aligned_cols=107  Identities=17%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+..|+++++.+|+++.++..+|.+++ ..|++++|++.++++++.+|++..++..+|.++.. .|++++|+.+|
T Consensus       139 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~  216 (899)
T TIGR02917       139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLAL-AENRFDEARALIDEVLTADPGNVDALLLKGDLLLS-LGNIELALAAY  216 (899)
T ss_pred             CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            55666666666666666666666666665555 35666666666666666666666666666655544 34666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +++++++|+++..+..++.++...|+.++
T Consensus       217 ~~a~~~~p~~~~~~~~~~~~~~~~g~~~~  245 (899)
T TIGR02917       217 RKAIALRPNNPAVLLALATILIEAGEFEE  245 (899)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            66666666666666666666666665443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.95  E-value=5.8e-09  Score=122.77  Aligned_cols=106  Identities=20%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH--------------HHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES--------------FSKYASFL  479 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA--------------L~nLG~~L  479 (536)
                      +++++|+..|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|++...              +..+|..+
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            67777777777777777777777777776666 4677777777777777777765431              12234444


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          480 WRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       480 ~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      .. .|++++|+.+|++|++++|+++.++.++|.++...|+.+
T Consensus       362 ~~-~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~  402 (1157)
T PRK11447        362 LK-ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYA  402 (1157)
T ss_pred             HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            43 356777777777777777777777777777777777654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.95  E-value=1.7e-08  Score=92.92  Aligned_cols=104  Identities=21%  Similarity=0.224  Sum_probs=85.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------cC
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV------RN  484 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~------~G  484 (536)
                      +++++|+.+|++|+.+.|+.   +.++.++|.++. ..|++++|+.+|++|++++|.+..++.++|.++...      .|
T Consensus        49 g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g  127 (168)
T CHL00033         49 GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQG  127 (168)
T ss_pred             CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcc
Confidence            89999999999999998764   458999998877 699999999999999999999999999999988722      24


Q ss_pred             CHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          485 DLW-------AAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       485 D~e-------EAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +++       +|+.+|++++..+|++..   ..+..+...|+.|
T Consensus       128 ~~~~A~~~~~~a~~~~~~a~~~~p~~~~---~~~~~~~~~~~~~  168 (168)
T CHL00033        128 DSEIAEAWFDQAAEYWKQAIALAPGNYI---EAQNWLKITGRFE  168 (168)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhCcccHH---HHHHHHHHhcCCC
Confidence            554       777888889999998764   3445566666543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.94  E-value=8.7e-09  Score=116.65  Aligned_cols=109  Identities=20%  Similarity=0.258  Sum_probs=100.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+++.+|+.+|+++|+++|+++.++.++|.++. ..|++++|+.+++++++.+|+++. +..+|.++.. .|++++|+..
T Consensus        62 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g~~~~Al~~  138 (765)
T PRK10049         62 LKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AGRHWDELRA  138 (765)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CCCHHHHHHH
Confidence            389999999999999999999999999998877 689999999999999999999999 9999998876 4799999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      |+++++++|+++.++..++.++...|..+.++
T Consensus       139 l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al  170 (765)
T PRK10049        139 MTQALPRAPQTQQYPTEYVQALRNNRLSAPAL  170 (765)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence            99999999999999999999999888766443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.89  E-value=1.9e-08  Score=96.06  Aligned_cols=109  Identities=20%  Similarity=0.235  Sum_probs=94.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-----
Q 009385          414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE---SFSKYASFLWRV-----  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae---AL~nLG~~L~e~-----  482 (536)
                      +++++|+..|++++..+|+++   .+++.+|.+++ ..|++++|+..|+++++.+|+++.   +++.+|.++...     
T Consensus        47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~  125 (235)
T TIGR03302        47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVD  125 (235)
T ss_pred             CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccccc
Confidence            899999999999999999987   57899999888 689999999999999999999987   788999988763     


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCccc
Q 009385          483 --RNDLWAAEETFLEAISADPTNSYYA-----------------ANYANFLWNTGGEDTC  523 (536)
Q Consensus       483 --~GD~eEAee~feKALeLDPdNpeal-----------------~NyA~~L~elGr~E~c  523 (536)
                        .|++++|+..|+++++.+|++..+.                 .++|.+++..|+.+++
T Consensus       126 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A  185 (235)
T TIGR03302       126 RDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAA  185 (235)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence              1579999999999999999997542                 3567888888887543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.88  E-value=3.2e-08  Score=91.78  Aligned_cols=101  Identities=23%  Similarity=0.350  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-----
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND-----  485 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD-----  485 (536)
                      +++++|+.+|++++.+.|+.   ..++.++|.++. ..|++++|+.+|+++++++|++..++..+|.++... ++     
T Consensus        49 g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~a~  126 (172)
T PRK02603         49 GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR-GEKAEEA  126 (172)
T ss_pred             CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-CChHhHh
Confidence            89999999999999988764   468999998887 699999999999999999999999999999988764 44     


Q ss_pred             ---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          486 ---------LWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       486 ---------~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                               +++|+++++++++++|++..   .....+...|+
T Consensus       127 ~~~~~A~~~~~~A~~~~~~a~~~~p~~~~---~~~~~~~~~~~  166 (172)
T PRK02603        127 GDQDEAEALFDKAAEYWKQAIRLAPNNYI---EAQNWLKTTGR  166 (172)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHhhCchhHH---HHHHHHHhcCc
Confidence                     68899999999999999842   34444445554

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.87  E-value=1.6e-08  Score=76.61  Aligned_cols=86  Identities=24%  Similarity=0.439  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      +++++|..++ ..|++++|+.+|+++++..|++..++..+|.++... +++++|+++|++++++.|.+..++..++.++.
T Consensus         2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKL-GKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            5778898887 589999999999999999999999999999988875 59999999999999999999999999999999


Q ss_pred             HcCCCccc
Q 009385          516 NTGGEDTC  523 (536)
Q Consensus       516 elGr~E~c  523 (536)
                      ..|+.+.+
T Consensus        80 ~~~~~~~a   87 (100)
T cd00189          80 KLGKYEEA   87 (100)
T ss_pred             HHHhHHHH
Confidence            99987654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.2e-08  Score=109.59  Aligned_cols=107  Identities=16%  Similarity=0.127  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++-..|+..|++|++++|.|..+|+++|+.|. .++.+.=|.-||++|+++.|+|...|..||.++... ++.++|+++|
T Consensus       378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl-~~~~eAiKCy  455 (559)
T KOG1155|consen  378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL-NRLEEAIKCY  455 (559)
T ss_pred             cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            56677888888888888888888888887765 577777788888888888888888888888777554 5788888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      .+|+...-.+..++..+|.++-++++.++
T Consensus       456 krai~~~dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  456 KRAILLGDTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence            88888777777777888888777776543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=2.4e-09  Score=116.92  Aligned_cols=110  Identities=19%  Similarity=0.228  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEP--NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdP--dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      ..+..-.++|..|...+|  .|+++...||.+++ ..|+|++|+.||+.||..+|+|...|+.||..|.. +.+.+||+.
T Consensus       408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIs  485 (579)
T KOG1125|consen  408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAIS  485 (579)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHH
Confidence            456778889999999999  79999999998887 68999999999999999999999999999999987 468999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      .|++|+++-|....+++|+|..+.++|-++++.+
T Consensus       486 AY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  486 AYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             HHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999999998766543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.87  E-value=2e-08  Score=101.67  Aligned_cols=112  Identities=16%  Similarity=0.110  Sum_probs=96.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPL-----LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDL  486 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~e-----AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~  486 (536)
                      ..|++++|+..|+++++.+|.+..     .+.++|.++. ..|++++|+++|+++++.+|++..++..+|.++.. .|++
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~  230 (389)
T PRK11788        153 QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-QGDY  230 (389)
T ss_pred             HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCH
Confidence            348999999999999999887643     5567887766 58999999999999999999999999999998876 5799


Q ss_pred             HHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCccccC
Q 009385          487 WAAEETFLEAISADPTNS-YYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       487 eEAee~feKALeLDPdNp-eal~NyA~~L~elGr~E~clp  525 (536)
                      ++|+++|+++++.+|++. ..+..++.++...|+.+++..
T Consensus       231 ~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  270 (389)
T PRK11788        231 AAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE  270 (389)
T ss_pred             HHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999874 567789999999999877654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.86  E-value=2.6e-08  Score=100.92  Aligned_cols=105  Identities=19%  Similarity=0.190  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-AESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-aeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      +++++|+.+|+++++.+|++..++..+|.++. ..|++++|+++|+++++.+|++ ..++..++.++... |++++|+.+
T Consensus       194 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~  271 (389)
T PRK11788        194 GDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEF  271 (389)
T ss_pred             CCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            56666666666666666666666666665555 4566666666666666666655 34455555555543 466666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ++++++.+|++..+ ..++.++...|+.+
T Consensus       272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~  299 (389)
T PRK11788        272 LRRALEEYPGADLL-LALAQLLEEQEGPE  299 (389)
T ss_pred             HHHHHHhCCCchHH-HHHHHHHHHhCCHH
Confidence            66666666655433 55666666666544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=2.8e-08  Score=107.99  Aligned_cols=103  Identities=21%  Similarity=0.311  Sum_probs=96.2

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      .+++|..|+.+|.+||..+|+|+.+|.|.|..+. ..+.+..|++..+++++++|++..+|..-|.++...+ +|++|.+
T Consensus       370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk-~ydkAle  447 (539)
T KOG0548|consen  370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK-EYDKALE  447 (539)
T ss_pred             hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            3489999999999999999999999999997666 7999999999999999999999999999999998765 8999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          492 TFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      .|++|+++||++.++...|..++..
T Consensus       448 ay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  448 AYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHhcCchhHHHHHHHHHHHHH
Confidence            9999999999999999988888765

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.82  E-value=3.1e-08  Score=94.53  Aligned_cols=111  Identities=19%  Similarity=0.097  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-------hCCHHHHHHHHHHHHHhCCCCHHHH-----------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL---LLANYAQFLYIV-------AHDYDRAEEYFKRAIAVEPPDAESF-----------  472 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e---AL~NLA~lL~e~-------~GD~deAEe~FeKALeLDPddaeAL-----------  472 (536)
                      +++++|+..|+++++.+|+++.   +++.+|.+++..       .|++++|++.|+++++.+|++..++           
T Consensus        84 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~  163 (235)
T TIGR03302        84 GDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN  163 (235)
T ss_pred             CCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence            8999999999999999999887   688889887631       1789999999999999999997653           


Q ss_pred             ------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCccccC
Q 009385          473 ------SKYASFLWRVRNDLWAAEETFLEAISADPTN---SYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       473 ------~nLG~~L~e~~GD~eEAee~feKALeLDPdN---peal~NyA~~L~elGr~E~clp  525 (536)
                            ..+|.+++. .|++.+|+..|+++++..|++   +.++.++|.++..+|+.+++.+
T Consensus       164 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~  224 (235)
T TIGR03302       164 RLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD  224 (235)
T ss_pred             HHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence                  245666655 579999999999999997765   5789999999999999876544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4.5e-08  Score=100.29  Aligned_cols=107  Identities=16%  Similarity=0.075  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN--DLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G--D~eEAee  491 (536)
                      .+.++-+.-.+.-|..||+|++-|.-||.+|. ..|+++.|+..|.+|+++.|+|++.+..||.+|+...|  .-.+|..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            56777888888888889999998888888877 68889999999999999999999988888888876543  4568888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      .|++|+++||+|+.+++.||..+++.|++.
T Consensus       215 ll~~al~~D~~~iral~lLA~~afe~g~~~  244 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAAFEQGDYA  244 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHH
Confidence            899999999999888888888888888864

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.78  E-value=1.2e-08  Score=110.16  Aligned_cols=110  Identities=19%  Similarity=0.266  Sum_probs=101.9

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      |..+..+-...|.+|..+||+|+.+|+..|++++ ..+++++|...|+++++++|+|+.++..++.++|++. ++++++.
T Consensus       372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~-k~~~~m~  449 (606)
T KOG0547|consen  372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH-KIAESMK  449 (606)
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence            4467888899999999999999999999999988 6899999999999999999999999999999999875 8999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .|+.+++--|+.++.+.-+|.+|...++.+++
T Consensus       450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A  481 (606)
T KOG0547|consen  450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA  481 (606)
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence            99999999999999999999999999976543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.78  E-value=1.2e-08  Score=100.54  Aligned_cols=112  Identities=19%  Similarity=0.232  Sum_probs=92.9

Q ss_pred             ccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          412 DYADYFRTELLYQTGLAQE--PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLd--Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      ..++++++...+.++....  |+++..|..+|.++. ..|+.++|+++|++||+++|+|++++..++.++... |++++|
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~-~~~~~~  199 (280)
T PF13429_consen  122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM-GDYDEA  199 (280)
T ss_dssp             HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT-CHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-CChHHH
Confidence            3479999999999988766  788999999998877 699999999999999999999999999999988764 689999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      ++.+++..+..|+++.++..+|.++..+|+.++++.
T Consensus       200 ~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~  235 (280)
T PF13429_consen  200 REALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE  235 (280)
T ss_dssp             HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc
Confidence            999999999889999999999999999999876553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.77  E-value=1.5e-08  Score=83.45  Aligned_cols=81  Identities=20%  Similarity=0.322  Sum_probs=72.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .+++++|+.+|+++++.+|.  +...++++|.+++ ..|++++|..++++ +..+|.+...+..+|.++... |++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l-~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL-GKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT-T-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh-CCHHHHH
Confidence            48999999999999999995  5677888999999 69999999999999 999999999999999999886 5999999


Q ss_pred             HHHHHH
Q 009385          491 ETFLEA  496 (536)
Q Consensus       491 e~feKA  496 (536)
                      +.|++|
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999986

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.77  E-value=5.1e-08  Score=89.76  Aligned_cols=103  Identities=12%  Similarity=0.060  Sum_probs=86.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND--PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn--~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eE  488 (536)
                      +.|..+...+.+.++.++.+  ..+++++|.++. ..|++++|+.+|++|+.+.|++   +.++.++|.++.. .|++++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~e   90 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTK   90 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHH
Confidence            45777777776666777777  566788998776 6899999999999999998774   4589999988876 579999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          489 AEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       489 Aee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      |+++|++|++++|.+...+.++|.++...|
T Consensus        91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         91 ALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.76  E-value=7.2e-08  Score=109.29  Aligned_cols=107  Identities=11%  Similarity=0.012  Sum_probs=100.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|++.|++++..+|....++.++|.++. ..|++++|+++|+++++++|+++.++..+|.++... |++++|+.++
T Consensus        29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~-g~~~eA~~~l  106 (765)
T PRK10049         29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA-GQYDEALVKA  106 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence            89999999999999999999999999998887 699999999999999999999999999999988764 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++++.+|+++. +..+|.++...|+.+.+
T Consensus       107 ~~~l~~~P~~~~-~~~la~~l~~~g~~~~A  135 (765)
T PRK10049        107 KQLVSGAPDKAN-LLALAYVYKRAGRHWDE  135 (765)
T ss_pred             HHHHHhCCCCHH-HHHHHHHHHHCCCHHHH
Confidence            999999999999 99999999999987544

>PLN02789 farnesyltranstransferase

Probab=98.76  E-value=5.7e-08  Score=100.59  Aligned_cols=103  Identities=8%  Similarity=-0.005  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDY--DRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~--deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      ++.+|+.++.++++.+|++..+|++.+.++. ..++.  +++..+++++|++||.|..+|+..+.++... |++++|+++
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-~~~~eeL~~  164 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-GGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-hhHHHHHHH
Confidence            6799999999999999999999999998776 46663  7889999999999999999999999988775 589999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      +.++|++||.|..++++.+.++.++|.
T Consensus       165 ~~~~I~~d~~N~sAW~~R~~vl~~~~~  191 (320)
T PLN02789        165 CHQLLEEDVRNNSAWNQRYFVITRSPL  191 (320)
T ss_pred             HHHHHHHCCCchhHHHHHHHHHHhccc
Confidence            999999999999999999999988744

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.75  E-value=5.8e-08  Score=109.79  Aligned_cols=108  Identities=14%  Similarity=-0.001  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009385          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLE  495 (536)
Q Consensus       416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feK  495 (536)
                      ..+++.-.+.....+|++++++.+||.+.. ..|++++|+..++++++++|++..++.+++.+|.+. +++++|...+++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~-~~~eeA~~~~~~  145 (694)
T PRK15179         68 PAAALPELLDYVRRYPHTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ-QGIEAGRAEIEL  145 (694)
T ss_pred             hHhhHHHHHHHHHhccccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence            334444455556678999999999999988 699999999999999999999999999999999875 599999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          496 AISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       496 ALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      +++.+|+++.+++.+|.+|.++|++|++..
T Consensus       146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179        146 YFSGGSSSAREILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HhhcCCCCHHHHHHHHHHHHHhcchHHHHH
Confidence            999999999999999999999999876543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.75  E-value=4.7e-08  Score=98.65  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |+-+.+..+..+++..+|.+..++..+|.... ..|++.+|+..|++|++++|+|.++|+.+|.+|.+ .|++++|...|
T Consensus        80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay  157 (257)
T COG5010          80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAY  157 (257)
T ss_pred             ccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHH
Confidence            67777888889999999999999988998887 68999999999999999999999999999998876 57999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      .+|+++.|+++.+..|+|..|.-.|+.+++-
T Consensus       158 ~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~  188 (257)
T COG5010         158 RQALELAPNEPSIANNLGMSLLLRGDLEDAE  188 (257)
T ss_pred             HHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999987654

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=3.2e-08  Score=108.29  Aligned_cols=106  Identities=18%  Similarity=0.168  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|++|+.+|+.||..+|+|..+|+-||..+. ...+.++|+..|.|||++.|++..+++|||+.+... |.|+||.++|
T Consensus       444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-G~ykEA~~hl  521 (579)
T KOG1125|consen  444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-GAYKEAVKHL  521 (579)
T ss_pred             hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-hhHHHHHHHH
Confidence            89999999999999999999999999998887 567899999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCCC----------HHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPTN----------SYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPdN----------peal~NyA~~L~elGr~E  521 (536)
                      ..||.+.+.+          -.++.+|=.+|.-+++.|
T Consensus       522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            9999998761          236667778888888766

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.72  E-value=6.2e-08  Score=100.95  Aligned_cols=85  Identities=20%  Similarity=0.228  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      +...|..++ ..|++++|+.+|++||+++|+++.++.++|.++... |++++|+.++++|++++|+++.+++++|.+|..
T Consensus         5 l~~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~-g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          5 LEDKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKL-GNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            344566667 589999999999999999999999999999988875 699999999999999999999999999999999


Q ss_pred             cCCCccc
Q 009385          517 TGGEDTC  523 (536)
Q Consensus       517 lGr~E~c  523 (536)
                      +|+++.+
T Consensus        83 lg~~~eA   89 (356)
T PLN03088         83 LEEYQTA   89 (356)
T ss_pred             hCCHHHH
Confidence            9987544

>PLN02789 farnesyltranstransferase

Probab=98.71  E-value=1.7e-07  Score=97.04  Aligned_cols=107  Identities=12%  Similarity=0.024  Sum_probs=97.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--HHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND--LWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD--~eEAe  490 (536)
                      +.+++|+..+.++|+++|++..+|...+.++. ..+ ++++|+.++.++++.+|++..+|+..+.++...+ +  +++++
T Consensus        51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~-~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~-~~~~~~el  128 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLE-ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG-PDAANKEL  128 (320)
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC-chhhHHHH
Confidence            58889999999999999999999999999888 466 6899999999999999999999999998876654 4  37889


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      .++++++++||+|..++.+.++++..+|+.++
T Consensus       129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e  160 (320)
T PLN02789        129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWED  160 (320)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH
Confidence            99999999999999999999999999997653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.69  E-value=2e-07  Score=78.24  Aligned_cols=89  Identities=15%  Similarity=0.135  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN---SYYA  507 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN---peal  507 (536)
                      +..++++|..+. ..|++++|+++|+++++.+|++   +.+++.+|.++... |++++|+.+|++++..+|++   +.++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQ-GKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            467888998877 6899999999999999999988   57899999988875 69999999999999999986   5789


Q ss_pred             HHHHHHHHHcCCCcccc
Q 009385          508 ANYANFLWNTGGEDTCF  524 (536)
Q Consensus       508 ~NyA~~L~elGr~E~cl  524 (536)
                      .++|.++..+|+.+.+.
T Consensus        80 ~~~~~~~~~~~~~~~A~   96 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAK   96 (119)
T ss_pred             HHHHHHHHHhCChHHHH
Confidence            99999999999875543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11906 transcriptional regulator; Provisional

Probab=98.68  E-value=1.5e-07  Score=101.54  Aligned_cols=107  Identities=7%  Similarity=-0.035  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 009385          414 ADYFRTELLYQTGL---AQEPNDPLLLANYAQFLYIV--------AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV  482 (536)
Q Consensus       414 gdyeeAee~YqKAL---eLdPdn~eAL~NLA~lL~e~--------~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~  482 (536)
                      ...++|..+|.+|+   +++|+++.+|..+|..++..        ..+..+|.+..++|+++||+|+.++..+|.+++..
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            47788999999999   99999999999988765432        23577899999999999999999999999988875


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       483 ~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                       ++++.|...|++|+.++|+.+.+++.+|+++...|+.+
T Consensus       352 -~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~  389 (458)
T PRK11906        352 -GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIE  389 (458)
T ss_pred             -cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHH
Confidence             57999999999999999999999999999999999864

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=1.1e-07  Score=102.43  Aligned_cols=111  Identities=13%  Similarity=0.124  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++.++|+.+|++||++||+...+|.-+|-=+. .+++...|+..|++|++++|.|-.||+.||..+-. .+-+.=|+-||
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYf  421 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYF  421 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHH
Confidence            68999999999999999999999999997666 58999999999999999999999999999997755 45789999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCC---ccccCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGE---DTCFPL  526 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~---E~clpl  526 (536)
                      ++|+++-|+++..+..+|.+|-.+++.   .+||+.
T Consensus       422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr  457 (559)
T KOG1155|consen  422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKR  457 (559)
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999999999999999999975   456653

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.67  E-value=1.9e-07  Score=90.35  Aligned_cols=98  Identities=18%  Similarity=0.226  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV---------AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR--  483 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~---------~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~--  483 (536)
                      -|+.|.+.|+.++..||.|++.+++.|.+|.+.         ..-+++|+.-|++||.++|+..++++++|.++..+.  
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            378899999999999999999999999876642         124678999999999999999999999999886542  


Q ss_pred             --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          484 --------NDLWAAEETFLEAISADPTNSYYAANYAN  512 (536)
Q Consensus       484 --------GD~eEAee~feKALeLDPdNpeal~NyA~  512 (536)
                              ..|++|..+|++|+..+|+|..|...+-.
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                    13889999999999999999988665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.64  E-value=5.8e-08  Score=75.84  Aligned_cols=55  Identities=27%  Similarity=0.559  Sum_probs=51.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA  469 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda  469 (536)
                      |++++|+..|+++++.+|+++.+++.+|.+++ .+|++++|+.+|+++++++|+|+
T Consensus        11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence            89999999999999999999999999999988 69999999999999999999986

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=7.9e-08  Score=104.06  Aligned_cols=108  Identities=16%  Similarity=0.211  Sum_probs=99.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++-.|...|.++|+++|.+..+|.-+|.+|. ..++-++-.++|.+|..+||+|+++|+..|.+++.. +++++|+.-|
T Consensus       340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~-d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL-~q~e~A~aDF  417 (606)
T KOG0547|consen  340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYA-DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL-QQYEEAIADF  417 (606)
T ss_pred             CCchhhhhhHHHHHhcCcccchHHHHHHHHHh-hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH-HHHHHHHHHH
Confidence            78999999999999999999999999997766 688899999999999999999999999999988765 5899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|++++|.|...+..+|.+++++++.++|
T Consensus       418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~  447 (606)
T KOG0547|consen  418 QKAISLDPENAYAYIQLCCALYRQHKIAES  447 (606)
T ss_pred             HHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999976543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.62  E-value=2.6e-07  Score=85.71  Aligned_cols=88  Identities=14%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009385          431 PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       431 Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal  507 (536)
                      |....+++++|..+. ..|++++|..+|+++++++|+.   +.++.++|.++.. .|++++|+.+|++|++++|+++..+
T Consensus        32 ~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         32 AKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             hhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHH
Confidence            456677889998777 6899999999999999988764   4689999998876 4799999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 009385          508 ANYANFLWNTGGE  520 (536)
Q Consensus       508 ~NyA~~L~elGr~  520 (536)
                      .++|.++...|+.
T Consensus       110 ~~lg~~~~~~g~~  122 (172)
T PRK02603        110 NNIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHHHcCCh
Confidence            9999999998874

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.60  E-value=5.2e-07  Score=91.24  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e  487 (536)
                      ++|++|+..|++.++.+|++   +.+++.+|.+++ ..|++++|..+|++++...|++   +++++.+|.++.. .|+++
T Consensus       157 ~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g~~~  234 (263)
T PRK10803        157 SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KGDTA  234 (263)
T ss_pred             CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cCCHH
Confidence            68999999999999999998   579999999988 6999999999999999999885   7889999998876 47999


Q ss_pred             HHHHHHHHHHHhCCCCHHH
Q 009385          488 AAEETFLEAISADPTNSYY  506 (536)
Q Consensus       488 EAee~feKALeLDPdNpea  506 (536)
                      +|+.+|+++++..|++..+
T Consensus       235 ~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        235 KAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHHHCcCCHHH
Confidence            9999999999999998865

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.60  E-value=2.4e-07  Score=92.96  Aligned_cols=98  Identities=23%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--
Q 009385          428 AQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY--  505 (536)
Q Consensus       428 eLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe--  505 (536)
                      ..+|++..++..+|.++. ..|++++|+..|+++++++|+++.++..+|.++++. |++++|+.++++++...|.++.  
T Consensus       108 ~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~-g~~~eA~~~l~~~l~~~~~~~~~~  185 (355)
T cd05804         108 PENPDYWYLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ-GRFKEGIAFMESWRDTWDCSSMLR  185 (355)
T ss_pred             cCCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHhhhhccCCCcchh
Confidence            344555555555665555 578889999999999999999988888888888874 6899999999999988875443  


Q ss_pred             --HHHHHHHHHHHcCCCccccCCC
Q 009385          506 --YAANYANFLWNTGGEDTCFPLS  527 (536)
Q Consensus       506 --al~NyA~~L~elGr~E~clpl~  527 (536)
                        .+..+|.++...|+.++++.+.
T Consensus       186 ~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         186 GHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHH
Confidence              3457888888888888776544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.58  E-value=1.6e-07  Score=73.50  Aligned_cols=63  Identities=27%  Similarity=0.341  Sum_probs=42.3

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385          448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYA  511 (536)
Q Consensus       448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA  511 (536)
                      .|++++|+++|++++..+|+|.+++..+|.++... |++++|+.++++++..+|+++.++.-++
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQ-GQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            56777777777777777777777777777766654 5677777777777777777666555444

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.58  E-value=1.1e-07  Score=74.69  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEP  466 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDP  466 (536)
                      +++++|+.+|.+||+++|+++.+++++|.+++ ..| ++++|+++|++||+++|
T Consensus        17 ~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   17 GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence            89999999999999999999999999999887 688 79999999999999998

...

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.57  E-value=2.8e-07  Score=92.54  Aligned_cols=88  Identities=17%  Similarity=0.177  Sum_probs=76.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE----SFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae----AL~nLG~~L~e~~GD~eE  488 (536)
                      .|++++|+..|+++++++|+++.++..+|.+++ ..|++++|+.+|++++...|.++.    .+..+|.++.. .|++++
T Consensus       127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-~G~~~~  204 (355)
T cd05804         127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-RGDYEA  204 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH-CCCHHH
Confidence            388999999999999999999999999999988 589999999999999999885543    34578877765 579999


Q ss_pred             HHHHHHHHHHhCCC
Q 009385          489 AEETFLEAISADPT  502 (536)
Q Consensus       489 Aee~feKALeLDPd  502 (536)
                      |+.+|++++...|.
T Consensus       205 A~~~~~~~~~~~~~  218 (355)
T cd05804         205 ALAIYDTHIAPSAE  218 (355)
T ss_pred             HHHHHHHHhccccC
Confidence            99999999888773

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.57  E-value=1.5e-07  Score=73.68  Aligned_cols=63  Identities=27%  Similarity=0.370  Sum_probs=58.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      |++++|+..|++++..+|+|..+++.+|.++. ..|++++|+..+++++..+|+++.++..++.
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            89999999999999999999999999999988 6999999999999999999999888877664

...

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.56  E-value=6.2e-07  Score=96.96  Aligned_cols=108  Identities=20%  Similarity=0.167  Sum_probs=100.6

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      .++.+++|+..++..++..|+|+..+-..+.++. ..++.++|.+.|++++.++|+.+....+||..|.. .|++.+|+.
T Consensus       318 ~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~  395 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIR  395 (484)
T ss_pred             HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHH
Confidence            3478999999999999999999999999999988 68999999999999999999999999999999987 469999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ++++.+.-+|+||..|..+|..+-.+|+..
T Consensus       396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence            999999999999999999999999999753

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.55  E-value=4.5e-07  Score=71.86  Aligned_cols=67  Identities=25%  Similarity=0.350  Sum_probs=53.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385          442 QFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANY  510 (536)
Q Consensus       442 ~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~Ny  510 (536)
                      .++. ..+++++|++++++++.++|+++.++..+|.++... |++.+|.+.|+++++.+|+++.+....
T Consensus         3 ~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    3 QIYL-QQEDYEEALEVLERALELDPDDPELWLQRARCLFQL-GRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHH-hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            3444 578888888888888888888888888888888765 588888888888888888888765443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.55  E-value=4.9e-07  Score=99.23  Aligned_cols=118  Identities=14%  Similarity=0.039  Sum_probs=94.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHh
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV-------AHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRV  482 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~-------~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~  482 (536)
                      +.+++.+|+.+|++|+++||+++.+|..++.++...       ..+.++|.+..++++.+  +|.++.+|..+|..+.. 
T Consensus       354 ~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-  432 (517)
T PRK10153        354 DAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-  432 (517)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-
Confidence            346788999999999999999999999888755421       12356777778887774  88889999999876654 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-------ccccCCCCCCC
Q 009385          483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE-------DTCFPLSSPDS  531 (536)
Q Consensus       483 ~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~-------E~clpl~~~~~  531 (536)
                      .|++++|+.+|++|++++| +..++..+|.++...|+.       ++++-+++.++
T Consensus       433 ~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        433 KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            5799999999999999999 578899999999999985       45555555543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.54  E-value=2.9e-07  Score=99.31  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=64.1

Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385          429 QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES---FSKYASFLWRVRNDLWAAEETFLEAISA  499 (536)
Q Consensus       429 LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA---L~nLG~~L~e~~GD~eEAee~feKALeL  499 (536)
                      .+|+++.+|+|+|.+|+ ..|+|++|+.+|++||+++|+++++   |+|+|.+|..+ |++++|+++|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~L-Gr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYR-EEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence            48999999999999988 6999999999999999999999965   99999988875 6999999999999998

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.51  E-value=1.1e-06  Score=100.03  Aligned_cols=106  Identities=19%  Similarity=0.261  Sum_probs=99.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|++++|+..+..+|+++|.++.+|+.||.++. .+||.++|...+..|--++|.|.+-|..++...-+ .|++.+|.-|
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~c  229 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYC  229 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHH
Confidence            399999999999999999999999999998876 69999999999999999999999999999986655 5689999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      |.+||+++|.|....+..+.+|-++|+.
T Consensus       230 y~rAI~~~p~n~~~~~ers~L~~~~G~~  257 (895)
T KOG2076|consen  230 YSRAIQANPSNWELIYERSSLYQKTGDL  257 (895)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence            9999999999999999999999999975

>TIGR00540 hemY_coli hemY protein

Probab=98.51  E-value=6.5e-07  Score=94.14  Aligned_cols=107  Identities=13%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCC
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLL----LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA--ESFSKYASFLWRVRND  485 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eA----L~NLA~lL~e~~GD~deAEe~FeKALeLDPdda--eAL~nLG~~L~e~~GD  485 (536)
                      ..|++++|+..++++++..|++...    +..+.  .. ..++.+++++.++++++.+|+|+  ..+..||.+++.. |+
T Consensus       275 ~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~--~l-~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~-~~  350 (409)
T TIGR00540       275 DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP--RL-KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH-GE  350 (409)
T ss_pred             HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh--hc-CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc-cc
Confidence            3489999999999999999999853    32222  12 35788999999999999999999  8999999999874 69


Q ss_pred             HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          486 LWAAEETFL--EAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       486 ~eEAee~fe--KALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++|+++|+  ++++.+|++.. +..+|.+++..|+.+++
T Consensus       351 ~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A  389 (409)
T TIGR00540       351 FIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEA  389 (409)
T ss_pred             HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence            999999999  68889998776 45999999999986543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.50  E-value=7.1e-07  Score=102.82  Aligned_cols=105  Identities=12%  Similarity=0.030  Sum_probs=52.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++..|+..|+++++.+|+++.+...++.++. ..|++++|+.++++++.-+|.+..++..+|.++.. .|++++|+++|
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-~gdyd~Aiely  125 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-EKRWDQALALW  125 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            55555555555555555555433224444433 34555555555555552222222222222434333 24555555555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      +++++.+|+|+.++..++.++.+.|+.
T Consensus       126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~  152 (822)
T PRK14574        126 QSSLKKDPTNPDLISGMIMTQADAGRG  152 (822)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence            555555555555555555555555544

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=6e-07  Score=97.88  Aligned_cols=99  Identities=18%  Similarity=0.278  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |+|+.|+.+|..||.++|.|..+|.|....+. ..|+|++|.+.-.+.++++|+.+.+|..+|..+.-. |+|++|+..|
T Consensus        16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l-g~~~eA~~ay   93 (539)
T KOG0548|consen   16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL-GDYEEAILAY   93 (539)
T ss_pred             ccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc-ccHHHHHHHH
Confidence            89999999999999999999999999987766 799999999999999999999999999999988764 7999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 009385          494 LEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L  514 (536)
                      .+.|+.||+|...+.+++.+.
T Consensus        94 ~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   94 SEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHhhcCCchHHHHHhHHHhh
Confidence            999999999999988888876

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=6.1e-07  Score=98.40  Aligned_cols=102  Identities=19%  Similarity=0.259  Sum_probs=75.4

Q ss_pred             cCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Q 009385          413 YADYFRTELLYQTGLAQEP-------NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND  485 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdP-------dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD  485 (536)
                      ++.|.+|..+|++++..-+       .-...+.|+|-++. ..+.+++|+.+|++||.+.|.|+.++..+|.++.. .|+
T Consensus       427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R-kl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-lgn  504 (611)
T KOG1173|consen  427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR-KLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL-LGN  504 (611)
T ss_pred             HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH-HHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-hcC
Confidence            4788888888888883321       12345778887766 67888888888888888888888888888877665 468


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          486 LWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       486 ~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      ++.|+++|.+||.++|+|..+-.-|+.++-.
T Consensus       505 ld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  505 LDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             hHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            8888888888888888887665556655543

>PRK11906 transcriptional regulator; Provisional

Probab=98.43  E-value=1.1e-06  Score=94.87  Aligned_cols=92  Identities=11%  Similarity=-0.021  Sum_probs=84.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      ..+..+|.++.++|+++||+|+.++..+|.++. ..++++.|...|++|+.++|+.+.+++.+|.++.. .|+.++|.+.
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~  394 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARIC  394 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHH
Confidence            467889999999999999999999999999888 57889999999999999999999999999998876 5799999999


Q ss_pred             HHHHHHhCCCCHHH
Q 009385          493 FLEAISADPTNSYY  506 (536)
Q Consensus       493 feKALeLDPdNpea  506 (536)
                      +++|++++|.-..+
T Consensus       395 i~~alrLsP~~~~~  408 (458)
T PRK11906        395 IDKSLQLEPRRRKA  408 (458)
T ss_pred             HHHHhccCchhhHH
Confidence            99999999986543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=2.3e-06  Score=87.94  Aligned_cols=92  Identities=20%  Similarity=0.269  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA--HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~--GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      +++..|...|.+|+++.|+|++.+..||.+++...  .+-.+|...|++||+.||+|..+++.||..+++. |+|.+|..
T Consensus       170 ~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~-g~~~~A~~  248 (287)
T COG4235         170 GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQ-GDYAEAAA  248 (287)
T ss_pred             cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc-ccHHHHHH
Confidence            79999999999999999999999999999887433  3578999999999999999999999999988875 69999999


Q ss_pred             HHHHHHHhCCCCHHH
Q 009385          492 TFLEAISADPTNSYY  506 (536)
Q Consensus       492 ~feKALeLDPdNpea  506 (536)
                      .+++-++..|.+...
T Consensus       249 ~Wq~lL~~lp~~~~r  263 (287)
T COG4235         249 AWQMLLDLLPADDPR  263 (287)
T ss_pred             HHHHHHhcCCCCCch
Confidence            999999998877654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.40  E-value=1.5e-06  Score=68.82  Aligned_cols=62  Identities=27%  Similarity=0.429  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA  476 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG  476 (536)
                      +++++|+.++++++.++|+++.++..+|.+++ ..|++++|.+.|+++++.+|+++.+....+
T Consensus         9 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    9 EDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            79999999999999999999999999999988 699999999999999999999999876654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.38  E-value=3.5e-06  Score=90.03  Aligned_cols=105  Identities=17%  Similarity=0.168  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++++.|+..|++..+.+|+   +...+|.++. ..++..+|.+.+.++|..+|++++.+...+.+|.. +++++.|+++.
T Consensus       183 ~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iA  257 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIA  257 (395)
T ss_pred             ccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence            6899999999999999986   3444677776 47888999999999999999999999999999887 56999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|+++.|++...++.|+.+|..+|++|.+
T Consensus       258 k~av~lsP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  258 KKAVELSPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999999999999998754

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.37  E-value=3.8e-06  Score=92.36  Aligned_cols=90  Identities=14%  Similarity=0.053  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ--EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeL--dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      .+..++.+..++++.+  +|.++.++..+|.... ..|++++|+.+|++|++++| +..+|..+|.++.. .|++++|++
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~  474 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAAD  474 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHH
Confidence            3566788888887775  8888999988887655 68999999999999999999 58999999997765 679999999


Q ss_pred             HHHHHHHhCCCCHHH
Q 009385          492 TFLEAISADPTNSYY  506 (536)
Q Consensus       492 ~feKALeLDPdNpea  506 (536)
                      .|++|++++|.++.+
T Consensus       475 ~~~~A~~L~P~~pt~  489 (517)
T PRK10153        475 AYSTAFNLRPGENTL  489 (517)
T ss_pred             HHHHHHhcCCCCchH
Confidence            999999999999864

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.36  E-value=3.5e-06  Score=97.22  Aligned_cols=106  Identities=14%  Similarity=0.082  Sum_probs=92.3

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+++++|+++|+++++.+|+++.++..++.++. ..++.++|++.+++++..+|.+... ..++.++.. .++..+|++.
T Consensus       115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-~~~~~~AL~~  191 (822)
T PRK14574        115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-TDRNYDALQA  191 (822)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-cchHHHHHHH
Confidence            389999999999999999999999999877666 6899999999999999999997776 445555443 3567779999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      |+++++.+|++.+++..|..++...|-..
T Consensus       192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~  220 (822)
T PRK14574        192 SSEAVRLAPTSEEVLKNHLEILQRNRIVE  220 (822)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCcH
Confidence            99999999999999999999999999654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=3.1e-06  Score=93.06  Aligned_cols=65  Identities=20%  Similarity=0.232  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL  479 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L  479 (536)
                      +.+++|+.+|++||.+.|.++.++..+|.++. ..|+++.|+.+|.+||.++|+|..+-..|+..+
T Consensus       469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~-llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYH-LLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHH-HhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            68889999999999999999999999997766 689999999999999999999977766666443

>TIGR00540 hemY_coli hemY protein

Probab=98.35  E-value=3.9e-06  Score=88.37  Aligned_cols=107  Identities=18%  Similarity=0.130  Sum_probs=76.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      |++.+|++...++.+..|+....+.-.|.+.. .+|++++|.++|+++++..|++. .+...++.++.. .|++++|.+.
T Consensus        98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~-~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-~~~~~~Al~~  175 (409)
T TIGR00540        98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQ-QRGDEARANQHLEEAAELAGNDNILVEIARTRILLA-QNELHAARHG  175 (409)
T ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-CCCHHHHHHH
Confidence            77777777777777777776666666666655 46777777777777777777775 455555666655 3577777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +++.++..|+++.++..++.++...|+.+.
T Consensus       176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~  205 (409)
T TIGR00540       176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQA  205 (409)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhHHH
Confidence            777777777777777777777777777653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.2e-06  Score=89.03  Aligned_cols=98  Identities=15%  Similarity=0.240  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPN----D-----------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd----n-----------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~  478 (536)
                      ++|..|...|++|+..=..    +           ..++.|+|..+. ..++|.+|+.+..++|+++|+|..|++.-|.+
T Consensus       222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A  300 (397)
T KOG0543|consen  222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQA  300 (397)
T ss_pred             chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence            7999999999998876331    1           246889997665 79999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANF  513 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~  513 (536)
                      +... |+|+.|+..|++|++++|+|-.+...+..+
T Consensus       301 ~l~~-~e~~~A~~df~ka~k~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  301 LLAL-GEYDLARDDFQKALKLEPSNKAARAELIKL  334 (397)
T ss_pred             HHhh-ccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            9875 699999999999999999998876555544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=3e-06  Score=91.56  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=99.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|...|+.||..|....++++|+|..+. .+|++++|+.+|.+.-.+--++++++..++.++-. ..+...|+++|
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye~-led~aqaie~~  581 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL-LEDPAQAIELL  581 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hhCHHHHHHHH
Confidence            89999999999999999999999999997655 79999999999999999999999999999997754 56999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .+|..+-|++|.++..+|.+|-+.|+.-.+
T Consensus       582 ~q~~slip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  582 MQANSLIPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             HHhcccCCCCHHHHHHHHHHhhcccchhhh
Confidence            999999999999999999999888875433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=1.1e-05  Score=82.16  Aligned_cols=127  Identities=16%  Similarity=0.216  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Q 009385          370 EELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH  449 (536)
Q Consensus       370 ~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G  449 (536)
                      +-+.+|++.+++-        -.|..+.+|-++.+.|.      |..-+|++....-++.-++|.++|..++.+|. ..|
T Consensus       104 ~A~e~y~~lL~dd--------pt~~v~~KRKlAilka~------GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~-~~~  168 (289)
T KOG3060|consen  104 EAIEYYESLLEDD--------PTDTVIRKRKLAILKAQ------GKNLEAIKELNEYLDKFMNDQEAWHELAEIYL-SEG  168 (289)
T ss_pred             hHHHHHHHHhccC--------cchhHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hHh
Confidence            4445666655543        34455555555555443      67779999999999999999999999999988 689


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385          450 DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN--DLWAAEETFLEAISADPTNSYYAANYA  511 (536)
Q Consensus       450 D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G--D~eEAee~feKALeLDPdNpeal~NyA  511 (536)
                      +|++|.-||++.+-+.|.++..+..||.++|-.+|  +++-|.+||.+|++++|.|...++.+.
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~  232 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY  232 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence            99999999999999999999999999999987664  789999999999999998877665543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=2.1e-06  Score=89.94  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      ++.+-|..+|++.|.+.-.+++++.|+|..+. ..+.+|-+..+|++|+...-++   +++|+|+|.+.... ||+.-|.
T Consensus       338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i-GD~nlA~  415 (478)
T KOG1129|consen  338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI-GDFNLAK  415 (478)
T ss_pred             CChHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec-cchHHHH
Confidence            57778888888888888888889999986555 6788999999999998875432   57899999877654 6999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .+|+-|+..||++.+++.|+|.+-.+.|+.+.+
T Consensus       416 rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  416 RCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             HHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            999999999999999999999999999987654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.29  E-value=5.2e-06  Score=87.33  Aligned_cols=104  Identities=15%  Similarity=0.138  Sum_probs=90.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|+.++|....+++++ .|.|+.+..-|+.+   ..++.+++.+.+++.++.+|+|+..+..+|.++... +++++|+++
T Consensus       276 ~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~-~~~~~A~~~  350 (398)
T PRK10747        276 CDDHDTAQQIILDGLK-RQYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH-GEWQEASLA  350 (398)
T ss_pred             CCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC-CCHHHHHHH
Confidence            3899999999999999 55577766667754   258999999999999999999999999999988875 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      |+++++++|++.. +..++.++.+.|+.++
T Consensus       351 le~al~~~P~~~~-~~~La~~~~~~g~~~~  379 (398)
T PRK10747        351 FRAALKQRPDAYD-YAWLADALDRLHKPEE  379 (398)
T ss_pred             HHHHHhcCCCHHH-HHHHHHHHHHcCCHHH
Confidence            9999999999865 4579999999998654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.24  E-value=9.9e-07  Score=72.65  Aligned_cols=76  Identities=17%  Similarity=0.317  Sum_probs=66.6

Q ss_pred             hCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          448 AHDYDRAEEYFKRAIAVEPP--DAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       448 ~GD~deAEe~FeKALeLDPd--daeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      .|++++|+.+|+++++.+|.  +...++.+|.+++.. |++++|+.++++ ++.+|.++..++.+|.++..+|+++++..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58999999999999999995  566778889999985 699999999999 88999999999999999999999987754

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.24  E-value=4.3e-06  Score=94.34  Aligned_cols=104  Identities=18%  Similarity=0.178  Sum_probs=64.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH--
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE--  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee--  491 (536)
                      ++.++|.-+..+|-.++|-.+..|+..|..+. ..|.+++|.+.|..|+.+||+|+..+..+|.++.+. |+..-|++  
T Consensus       664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~-G~~~la~~~~  741 (799)
T KOG4162|consen  664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL-GSPRLAEKRS  741 (799)
T ss_pred             CCchHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-CCcchHHHHH
Confidence            45555666666666666666666666665544 456666666666666666666666666666655543 34444444  


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      ....|+++||.|+++|+++|.++...|+
T Consensus       742 ~L~dalr~dp~n~eaW~~LG~v~k~~Gd  769 (799)
T KOG4162|consen  742 LLSDALRLDPLNHEAWYYLGEVFKKLGD  769 (799)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence            6666666666666666666666666665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.24  E-value=1.7e-05  Score=71.77  Aligned_cols=108  Identities=19%  Similarity=0.196  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e  487 (536)
                      ++...+...+++.+..+|+.   ..+.+.+|.+++ ..|++++|.+.|++++...|++   ..+...+|.++... |+++
T Consensus        25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~-~~~d  102 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ-GQYD  102 (145)
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHH
Confidence            78888888999999999998   566777888887 5899999999999999988776   35778889888764 6999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          488 AAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       488 EAee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      +|+..+++ +.-.+-.+.++...|.++...|+.+++.
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~  138 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEAR  138 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHH
Confidence            99999966 3444555667888999999999887653

>PRK15331 chaperone protein SicA; Provisional

Probab=98.19  E-value=1.4e-05  Score=76.40  Aligned_cols=113  Identities=9%  Similarity=0.060  Sum_probs=94.7

Q ss_pred             ccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Q 009385          390 ESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA  469 (536)
Q Consensus       390 ~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda  469 (536)
                      ..+.++++..+-.... .+  -..|++++|+..|+-....||.|+..+.+||.++. ..++|++|+..|-.|..++++|+
T Consensus        30 ~gis~~~le~iY~~Ay-~~--y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         30 HGIPQDMMDGLYAHAY-EF--YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             hCCCHHHHHHHHHHHH-HH--HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCC
Confidence            3566777775555331 11  13399999999999999999999999999997766 69999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009385          470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAA  508 (536)
Q Consensus       470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~  508 (536)
                      ...+..|.++... |+.++|+.+|+.|+. .|.+.....
T Consensus       106 ~p~f~agqC~l~l-~~~~~A~~~f~~a~~-~~~~~~l~~  142 (165)
T PRK15331        106 RPVFFTGQCQLLM-RKAAKARQCFELVNE-RTEDESLRA  142 (165)
T ss_pred             CccchHHHHHHHh-CCHHHHHHHHHHHHh-CcchHHHHH
Confidence            9999999988875 699999999999999 587776543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.19  E-value=9.1e-06  Score=91.80  Aligned_cols=92  Identities=17%  Similarity=0.219  Sum_probs=84.8

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEE--YFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe--~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      ..+.+.+|.+.|..|+.+||+++.+...+|.++. ..|+-.-|+.  .+..|+++||.|+++|+++|.++.. .||.++|
T Consensus       696 ~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~Gd~~~A  773 (799)
T KOG4162|consen  696 VKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LGDSKQA  773 (799)
T ss_pred             HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccchHHH
Confidence            4489999999999999999999999999999887 5888777888  9999999999999999999998865 5799999


Q ss_pred             HHHHHHHHHhCCCCHH
Q 009385          490 EETFLEAISADPTNSY  505 (536)
Q Consensus       490 ee~feKALeLDPdNpe  505 (536)
                      -++|+.|+++++.+|.
T Consensus       774 aecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  774 AECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHhhccCCCc
Confidence            9999999999999874

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.18  E-value=1.3e-05  Score=72.56  Aligned_cols=86  Identities=24%  Similarity=0.177  Sum_probs=73.1

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcC
Q 009385          411 DDYADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP---DAESFSKYASFLWRVRN  484 (536)
Q Consensus       411 Dd~gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd---daeAL~nLG~~L~e~~G  484 (536)
                      |..|+.++|+.+|++|++...+.   ..++.++|..+. ..|++++|+..+++++.-.|+   +..+...++..++.. |
T Consensus        12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~-g   89 (120)
T PF12688_consen   12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL-G   89 (120)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC-C
Confidence            35589999999999999986555   468888998887 689999999999999998888   777888888888875 6


Q ss_pred             CHHHHHHHHHHHHH
Q 009385          485 DLWAAEETFLEAIS  498 (536)
Q Consensus       485 D~eEAee~feKALe  498 (536)
                      ++++|+..+..++.
T Consensus        90 r~~eAl~~~l~~la  103 (120)
T PF12688_consen   90 RPKEALEWLLEALA  103 (120)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998887

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=1.7e-05  Score=80.65  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +.+++|+++|...|+-||.|..++--.-.++- .+|.--+|++.+..-++.-|+|.++|..++.++... |+|++|.-+|
T Consensus       100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~-~~f~kA~fCl  177 (289)
T KOG3060|consen  100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE-GDFEKAAFCL  177 (289)
T ss_pred             hchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH-hHHHHHHHHH
Confidence            79999999999999999999988875333443 688888999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ++.+-+.|.|+.++..||.+++-.|..+
T Consensus       178 EE~ll~~P~n~l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  178 EELLLIQPFNPLYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            9999999999999999999999999753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.18  E-value=1.8e-05  Score=83.29  Aligned_cols=90  Identities=12%  Similarity=0.091  Sum_probs=46.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLA-NYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~-NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      |++++|..+|++|.+.+|++..+.. ..+.++. ..|++++|.+.++++++.+|+|+.++..++.++... ||+++|++.
T Consensus       132 g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~  209 (398)
T PRK10747        132 GDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT-GAWSSLLDI  209 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhHHHHHHH
Confidence            5555555555555555555533221 1233333 355555555555555555555555555555544443 355555555


Q ss_pred             HHHHHHhCCCCHH
Q 009385          493 FLEAISADPTNSY  505 (536)
Q Consensus       493 feKALeLDPdNpe  505 (536)
                      +.+..+..+.++.
T Consensus       210 l~~l~k~~~~~~~  222 (398)
T PRK10747        210 LPSMAKAHVGDEE  222 (398)
T ss_pred             HHHHHHcCCCCHH
Confidence            5555555544443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.16  E-value=5.6e-06  Score=87.30  Aligned_cols=98  Identities=19%  Similarity=0.228  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |.|++|+.||.+++..+|.|+..+.|.|.+|. ..+.+..|+.....||.+|-.+..+|...|..-..+ |...||.+-+
T Consensus       111 gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYl-k~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L-g~~~EAKkD~  188 (536)
T KOG4648|consen  111 GKYEEAIDCYSTAIAVYPHNPVYHINRALAYL-KQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL-GNNMEAKKDC  188 (536)
T ss_pred             cchhHHHHHhhhhhccCCCCccchhhHHHHHH-HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH-hhHHHHHHhH
Confidence            79999999999999999999999999998877 689999999999999999999999999998876665 5899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH
Q 009385          494 LEAISADPTNSYYAANYANF  513 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~  513 (536)
                      +.+|+++|++-+..-.|+.+
T Consensus       189 E~vL~LEP~~~ELkK~~a~i  208 (536)
T KOG4648|consen  189 ETVLALEPKNIELKKSLARI  208 (536)
T ss_pred             HHHHhhCcccHHHHHHHHHh
Confidence            99999999998876666654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.16  E-value=5.1e-06  Score=91.32  Aligned_cols=112  Identities=25%  Similarity=0.314  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ--------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE-----PPD---AESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeL--------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD-----Pdd---aeAL~nLG~  477 (536)
                      ++|.+|+..|++||.+        +|.-+.++.|||.+|+ ..|++++|+.++++|+++-     .++   +..+.+++.
T Consensus       255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~  333 (508)
T KOG1840|consen  255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAA  333 (508)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHH
Confidence            8999999999999987        3445578999999888 6999999999999999874     233   345677776


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCCccccCCC
Q 009385          478 FLWRVRNDLWAAEETFLEAISA-----DPTN---SYYAANYANFLWNTGGEDTCFPLS  527 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeL-----DPdN---peal~NyA~~L~elGr~E~clpl~  527 (536)
                      ++.. ++++++|+.+|++++++     .++|   +.++.|||.+|..+|+++++.++.
T Consensus       334 ~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~  390 (508)
T KOG1840|consen  334 ILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELY  390 (508)
T ss_pred             HHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            6654 57999999999999986     3444   456889999999999987766543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.15  E-value=4.2e-06  Score=94.05  Aligned_cols=109  Identities=16%  Similarity=0.156  Sum_probs=97.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|.++.+++++.++++|-....|+++|.+.. ..+++..|.++|.+.+.++|+|.++|+|++..+... ++..+|-..+
T Consensus       499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~-~~k~ra~~~l  576 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL-KKKKRAFRKL  576 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH-hhhHHHHHHH
Confidence            68999999999999999999999999997766 589999999999999999999999999999887765 5889999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      .+|++-+-++..++-||-.+..+.|..|.++
T Consensus       577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             HHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence            9999999888899999999999999766443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.14  E-value=2e-05  Score=79.80  Aligned_cols=92  Identities=13%  Similarity=0.027  Sum_probs=78.2

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHH
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN---SYY  506 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN---pea  506 (536)
                      +....++.|..+....|+|++|+..|++.++..|++   +.+++.+|.+++. .|++++|+.+|+++++..|++   +++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            457777777655435699999999999999999999   5899999999887 469999999999999998885   567


Q ss_pred             HHHHHHHHHHcCCCccccC
Q 009385          507 AANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       507 l~NyA~~L~elGr~E~clp  525 (536)
                      ++.+|.++..+|+.+++..
T Consensus       220 l~klg~~~~~~g~~~~A~~  238 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKA  238 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHH
Confidence            8899999999998765543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.14  E-value=7.1e-06  Score=94.44  Aligned_cols=129  Identities=21%  Similarity=0.307  Sum_probs=92.7

Q ss_pred             cccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC--
Q 009385          391 SLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD--  468 (536)
Q Consensus       391 ~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd--  468 (536)
                      .+||..+..++......+...+...+..+...+.+|...+|+||.++..||.-+| ..|||..+...++.|+...-+.  
T Consensus       227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~  305 (1018)
T KOG2002|consen  227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSI  305 (1018)
T ss_pred             hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHH
Confidence            5677777777776555555556678888888888888888888888888887766 5777777777777777655333  


Q ss_pred             -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCc
Q 009385          469 -AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN-SYYAANYANFLWNTGGED  521 (536)
Q Consensus       469 -aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN-peal~NyA~~L~elGr~E  521 (536)
                       ++.++++|..+.. .||+++|..||.++++.+|++ ...++.+|..+...|+.+
T Consensus       306 ~aes~Y~~gRs~Ha-~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle  359 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHA-QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE  359 (1018)
T ss_pred             HHHHHHHHHHHHHh-hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence             3457777776544 467777777777777777777 555667777777777654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.13  E-value=3.1e-06  Score=68.18  Aligned_cols=66  Identities=21%  Similarity=0.347  Sum_probs=54.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385          432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE----PPD---AESFSKYASFLWRVRNDLWAAEETFLEAISA  499 (536)
Q Consensus       432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD----Pdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeL  499 (536)
                      +-..++.++|.+++ ..|++++|+++|++|+++.    +++   +.+++++|.++.. .|++++|+++|++|+++
T Consensus         3 ~~a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            34578999999888 6999999999999999762    232   5678999998876 47999999999999986

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.11  E-value=1.1e-05  Score=83.38  Aligned_cols=84  Identities=21%  Similarity=0.241  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      +-+=|.=++ ..++|.+|+..|.+||+++|.|+-.|.+.|.+|..+ |.++.|++-.++||.+||.+..+|..+|.+|..
T Consensus        84 LK~eGN~~m-~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~L-g~~~~AVkDce~Al~iDp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   84 LKNEGNKLM-KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKL-GEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-cchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence            334455555 479999999999999999999999999999999886 599999999999999999999999999999999


Q ss_pred             cCCCcc
Q 009385          517 TGGEDT  522 (536)
Q Consensus       517 lGr~E~  522 (536)
                      +|+++.
T Consensus       162 ~gk~~~  167 (304)
T KOG0553|consen  162 LGKYEE  167 (304)
T ss_pred             cCcHHH
Confidence            998753

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.08  E-value=5.2e-05  Score=68.75  Aligned_cols=89  Identities=21%  Similarity=0.158  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPT---NSYYA  507 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd---Npeal  507 (536)
                      +.+++++|.++- ..|+.++|+.+|++|++..+..   ..++..+|..+... |++++|+..+++++...|+   +....
T Consensus         1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~L-G~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNL-GRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            357889998766 6999999999999999987665   56899999988875 7999999999999999898   78888


Q ss_pred             HHHHHHHHHcCCCcccc
Q 009385          508 ANYANFLWNTGGEDTCF  524 (536)
Q Consensus       508 ~NyA~~L~elGr~E~cl  524 (536)
                      ..++.+|.+.|+.++++
T Consensus        79 ~f~Al~L~~~gr~~eAl   95 (120)
T PF12688_consen   79 VFLALALYNLGRPKEAL   95 (120)
T ss_pred             HHHHHHHHHCCCHHHHH
Confidence            89999999999987654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.07  E-value=1.1e-05  Score=89.74  Aligned_cols=157  Identities=11%  Similarity=0.098  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCc--------cccCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385          368 REEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEA--------DDYADYFRTELLYQTGLAQEPNDPLLLAN  439 (536)
Q Consensus       368 ~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLep--------Dd~gdyeeAee~YqKALeLdPdn~eAL~N  439 (536)
                      |..|..||..++.-=-..|-   .--...++.+++...-+-+.        .-.|+-++|..+.+.++..|+.....|.-
T Consensus         4 ~~KE~~lF~~~lk~yE~kQY---kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv   80 (700)
T KOG1156|consen    4 SPKENALFRRALKCYETKQY---KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHV   80 (700)
T ss_pred             ChHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHH
Confidence            34577788887764333332   22233334444322101111        13478888888889999999988888988


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          440 YAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       440 LA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      ||.++. ..++|++|+++|+.||.++|+|-..|..++.+..+. ++++.....-.+-++++|.+-..+..+|..+...|+
T Consensus        81 ~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm-Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~  158 (700)
T KOG1156|consen   81 LGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM-RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE  158 (700)
T ss_pred             HHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            886554 678899999999999999999999999888766654 588888888888899999888888888888888888


Q ss_pred             CccccCCCCC
Q 009385          520 EDTCFPLSSP  529 (536)
Q Consensus       520 ~E~clpl~~~  529 (536)
                      +..++++-+.
T Consensus       159 y~~A~~il~e  168 (700)
T KOG1156|consen  159 YKMALEILEE  168 (700)
T ss_pred             HHHHHHHHHH
Confidence            8777766443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.07  E-value=1.1e-05  Score=77.18  Aligned_cols=93  Identities=11%  Similarity=-0.061  Sum_probs=82.1

Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385          427 LAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY  506 (536)
Q Consensus       427 LeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea  506 (536)
                      ..+.++.-+..+.+|.-+| ..|++++|+..|+-...+||.|++.+..||.++.. .++|++|+..|..|..++++||..
T Consensus        30 ~gis~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         30 HGIPQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             hCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCc
Confidence            3345556677788887777 58999999999999999999999999999987765 569999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCc
Q 009385          507 AANYANFLWNTGGED  521 (536)
Q Consensus       507 l~NyA~~L~elGr~E  521 (536)
                      .+..|.++..+|+.+
T Consensus       108 ~f~agqC~l~l~~~~  122 (165)
T PRK15331        108 VFFTGQCQLLMRKAA  122 (165)
T ss_pred             cchHHHHHHHhCCHH
Confidence            999999999999864

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=8.1e-06  Score=87.43  Aligned_cols=109  Identities=21%  Similarity=0.210  Sum_probs=85.4

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS------------KYASFL  479 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~------------nLG~~L  479 (536)
                      ..+++++|...--..+++++.+.++++-.|.++| ...+.++|...|+++|+++|++.++-.            .-|.-+
T Consensus       181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~  259 (486)
T KOG0550|consen  181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDA  259 (486)
T ss_pred             hcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhH
Confidence            3478888888888899999999998888888777 688899999999999999998875432            224444


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCCcc
Q 009385          480 WRVRNDLWAAEETFLEAISADPTNSY----YAANYANFLWNTGGEDT  522 (536)
Q Consensus       480 ~e~~GD~eEAee~feKALeLDPdNpe----al~NyA~~L~elGr~E~  522 (536)
                      +. .|++.+|.++|..||.+||+|..    .+.|.|.+...+|+.++
T Consensus       260 fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e  305 (486)
T KOG0550|consen  260 FK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE  305 (486)
T ss_pred             hh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence            44 46889999999999999998754    47788888888887643

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=1.5e-05  Score=83.72  Aligned_cols=106  Identities=16%  Similarity=0.103  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +....|+..|...++.-|.|...+...|+++. .++++++|.++|+++++++|.|.+++.-.|.-++. .++.+-|..||
T Consensus       270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e-am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryY  347 (478)
T KOG1129|consen  270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHE-AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYY  347 (478)
T ss_pred             ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH-HHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHH
Confidence            45666777777777777777777777776655 56777777777777777777777766655554443 45677777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ++.+++--.+|+.+.|+|.+.+-.+.+|
T Consensus       348 RRiLqmG~~speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  348 RRILQMGAQSPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence            7777777777777777766666666554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.01  E-value=2.2e-05  Score=91.24  Aligned_cols=105  Identities=9%  Similarity=-0.021  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------------------HHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-------------------ESFSK  474 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-------------------eAL~n  474 (536)
                      +++++|++..+.+++..|+...+|+.+|.+++ ..+++.+|...  +++.+-+.+.                   .|++.
T Consensus        45 ~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~  121 (906)
T PRK14720         45 NLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRT  121 (906)
T ss_pred             CCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHH
Confidence            89999999999999999999999999998666 46666665555  5555555555                   99999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       475 LG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ||.+|-. .|+.++|.+.|++++++||+|+.++.|||.+|... +.+++
T Consensus       122 LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720        122 LAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             HHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence            9987654 57999999999999999999999999999999887 65544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.99  E-value=4e-05  Score=69.40  Aligned_cols=83  Identities=22%  Similarity=0.288  Sum_probs=70.8

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eE  488 (536)
                      +.|++++|...|++++...|++   +.+.+.+|.++. ..|++++|+..++. +.-.+-.+.++..+|.++.. .|++++
T Consensus        60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-~g~~~~  136 (145)
T PF09976_consen   60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-QGDYDE  136 (145)
T ss_pred             HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-CCCHHH
Confidence            3499999999999999988776   357778898888 69999999999976 45566677889999999886 579999


Q ss_pred             HHHHHHHHH
Q 009385          489 AEETFLEAI  497 (536)
Q Consensus       489 Aee~feKAL  497 (536)
                      |+..|++||
T Consensus       137 A~~~y~~Al  145 (145)
T PF09976_consen  137 ARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhC
Confidence            999999985

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.97  E-value=7.3e-05  Score=81.32  Aligned_cols=95  Identities=21%  Similarity=0.227  Sum_probs=86.2

Q ss_pred             HHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385          427 LAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY  506 (536)
Q Consensus       427 LeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea  506 (536)
                      ...+|.-..+++..|...+ ..|++++|++.+...+...|+|+..+...+.++.+. |+.++|++.+++|+.++|+.+..
T Consensus       299 ~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~-nk~~~A~e~~~kal~l~P~~~~l  376 (484)
T COG4783         299 KRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEA-NKAKEAIERLKKALALDPNSPLL  376 (484)
T ss_pred             HHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCccHH
Confidence            3344889999999998888 589999999999999999999999999999999885 69999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCccc
Q 009385          507 AANYANFLWNTGGEDTC  523 (536)
Q Consensus       507 l~NyA~~L~elGr~E~c  523 (536)
                      ..+||..|.+.|+..++
T Consensus       377 ~~~~a~all~~g~~~ea  393 (484)
T COG4783         377 QLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHHHHHHHhcCChHHH
Confidence            99999999999987543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=97.95  E-value=3e-05  Score=85.41  Aligned_cols=113  Identities=23%  Similarity=0.277  Sum_probs=92.8

Q ss_pred             cCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQE-----PND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--------PPDAESFSKYA  476 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLd-----Pdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--------PddaeAL~nLG  476 (536)
                      .+++++|+.+|++++++.     ++|   +..+.|||.+++ ..|++++|+++|++||.+.        +.....++++|
T Consensus       338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la  416 (508)
T KOG1840|consen  338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA  416 (508)
T ss_pred             hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence            379999999999999873     334   577889998888 6999999999999999974        44567899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHcCCCccccCCC
Q 009385          477 SFLWRVRNDLWAAEETFLEAISA----DPTN---SYYAANYANFLWNTGGEDTCFPLS  527 (536)
Q Consensus       477 ~~L~e~~GD~eEAee~feKALeL----DPdN---peal~NyA~~L~elGr~E~clpl~  527 (536)
                      ..+.+ .+++.+|.+.|.+++.+    -|++   ...+.|||.+|..+|++|++..+.
T Consensus       417 ~~~~~-~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~  473 (508)
T KOG1840|consen  417 EAYEE-LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE  473 (508)
T ss_pred             HHHHH-hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence            87765 56899999999999876    3444   456889999999999998876553

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.95  E-value=4.5e-05  Score=88.08  Aligned_cols=100  Identities=15%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND-PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR---NDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn-~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~---GD~eEA  489 (536)
                      |+|++|..+|.+++..+|++ ...++++|+++. ..|+++.|+.+|++.++..|++.+.+..||.++....   ...++|
T Consensus       321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a  399 (1018)
T KOG2002|consen  321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA  399 (1018)
T ss_pred             ccHHHHHHHHHHHHccCCCCccccccchhHHHH-HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence            56666666666666666666 555666666655 4566666666666666666666666666665444320   024566


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385          490 EETFLEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L  514 (536)
                      ..+..++++..|.+.+++..+|.+|
T Consensus       400 ~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  400 SNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHH
Confidence            6666666666666666555555533

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.92  E-value=0.00018  Score=71.75  Aligned_cols=107  Identities=15%  Similarity=0.127  Sum_probs=84.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhc----
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLL---ANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVR----  483 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL---~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~----  483 (536)
                      |+|++|+..|++++...|+.+.+.   +++|.+++ ..+++++|+.+|++.++.+|+|+   .+++.+|.......    
T Consensus        46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~  124 (243)
T PRK10866         46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSAL  124 (243)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhh
Confidence            899999999999999999988665   78898888 69999999999999999999995   56777776532211    


Q ss_pred             ----------CC---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCCc
Q 009385          484 ----------ND---LWAAEETFLEAISADPTNSYY-----------------AANYANFLWNTGGED  521 (536)
Q Consensus       484 ----------GD---~eEAee~feKALeLDPdNpea-----------------l~NyA~~L~elGr~E  521 (536)
                                .|   ..+|+..|++.++.-|+...+                 -...|.++++.|.+.
T Consensus       125 ~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~  192 (243)
T PRK10866        125 QGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYV  192 (243)
T ss_pred             hhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH
Confidence                      12   357889999999999998643                 234566677777653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00012  Score=78.89  Aligned_cols=98  Identities=12%  Similarity=0.100  Sum_probs=85.9

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       411 Dd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .|.---++|..+|+++|.++|+...+-..+|.++. ..|.+++++..++++|...|++ ..+..||.++.-. +.+.+|.
T Consensus       415 ~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~-Ne~Q~am  491 (564)
T KOG1174|consen  415 PDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ-NEPQKAM  491 (564)
T ss_pred             cCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh-hhHHHHH
Confidence            35567789999999999999999999999998877 6899999999999999988865 5678899998765 5899999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHH
Q 009385          491 ETFLEAISADPTNSYYAANYA  511 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA  511 (536)
                      .+|.+|+++||+|-..+-.+-
T Consensus       492 ~~y~~ALr~dP~~~~sl~Gl~  512 (564)
T KOG1174|consen  492 EYYYKALRQDPKSKRTLRGLR  512 (564)
T ss_pred             HHHHHHHhcCccchHHHHHHH
Confidence            999999999999987655544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.89  E-value=0.00013  Score=74.48  Aligned_cols=92  Identities=24%  Similarity=0.291  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e  487 (536)
                      |+|..|+..|+.-|+..|+.   +.+++.||..+| .+|++++|...|..+++-.|++   +++++.+|.++.+. |+.+
T Consensus       155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l-~~~d  232 (262)
T COG1729         155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL-GNTD  232 (262)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh-cCHH
Confidence            78999999999999999997   478999999999 6999999999999999998887   58899999999886 5899


Q ss_pred             HHHHHHHHHHHhCCCCHHHH
Q 009385          488 AAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       488 EAee~feKALeLDPdNpeal  507 (536)
                      +|...|++.++--|+.+.+.
T Consensus       233 ~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         233 EACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHHHHHHHHHCCCCHHHH
Confidence            99999999999999988753

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.87  E-value=2.8e-05  Score=57.66  Aligned_cols=42  Identities=26%  Similarity=0.347  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      .++..||.++. ..|++++|++.|+++|+.+|+|++++..||.
T Consensus         2 ~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            45666776665 4677777777777777777777777776663

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.86  E-value=5.5e-05  Score=84.51  Aligned_cols=106  Identities=11%  Similarity=0.030  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +.|.+.++..+..|+..|.+++.+.-.|..++ ..|+-++|..+-+.+++.|+...--|..+|.++.. .++|++|+++|
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiKcy   98 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIKCY   98 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHHHH
Confidence            68999999999999999999999999999888 68999999999999999999999999999976554 56999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +.|+.++|+|-+++..++.++.++|+++
T Consensus        99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   99 RNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.86  E-value=9.2e-05  Score=77.69  Aligned_cols=123  Identities=12%  Similarity=0.102  Sum_probs=98.0

Q ss_pred             ccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 009385          392 LDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLL-----LANYAQFLYIVAHDYDRAEEYFKRAIAVEP  466 (536)
Q Consensus       392 lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eA-----L~NLA~lL~e~~GD~deAEe~FeKALeLDP  466 (536)
                      ....+++.++.--++.      .++++|++..++..++.|++-..     +..||+.+. ...+.++|...++||++.||
T Consensus       139 fa~~AlqqLl~IYQ~t------reW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~  211 (389)
T COG2956         139 FAEGALQQLLNIYQAT------REWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADK  211 (389)
T ss_pred             hhHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCc
Confidence            3344555555444333      69999999999999999887543     344554443 46789999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCcc
Q 009385          467 PDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS-YYAANYANFLWNTGGEDT  522 (536)
Q Consensus       467 ddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp-eal~NyA~~L~elGr~E~  522 (536)
                      +++.+=..+|.+... +|+|++|++.++++++.||+.. +++-.+..+|.++|+.+.
T Consensus       212 ~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         212 KCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             cceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence            999999999998875 5799999999999999999874 677888999999998754

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.81  E-value=0.0003  Score=69.55  Aligned_cols=141  Identities=21%  Similarity=0.209  Sum_probs=109.4

Q ss_pred             cCCCChHHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHH-hCCCCHHHHHHHH
Q 009385          363 SGQVDREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLA-QEPNDPLLLANYA  441 (536)
Q Consensus       363 ~~~~~~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALe-LdPdn~eAL~NLA  441 (536)
                      +..+||+-++.--..-++-|+-.|.            -+...+|..|   .|++.+|..+|++++. +..+|+..+..+|
T Consensus        67 ~q~ldP~R~~Rea~~~~~~ApTvqn------------r~rLa~al~e---lGr~~EA~~hy~qalsG~fA~d~a~lLglA  131 (251)
T COG4700          67 QQKLDPERHLREATEELAIAPTVQN------------RYRLANALAE---LGRYHEAVPHYQQALSGIFAHDAAMLLGLA  131 (251)
T ss_pred             HHhcChhHHHHHHHHHHhhchhHHH------------HHHHHHHHHH---hhhhhhhHHHHHHHhccccCCCHHHHHHHH
Confidence            4578888777544443444444332            1111122222   2999999999999987 4678999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          442 QFLYIVAHDYDRAEEYFKRAIAVEPPD--AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       442 ~lL~e~~GD~deAEe~FeKALeLDPdd--aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      +..+ ..++...|...+++..+.+|..  ++.+..+|..|.- .|++..|+..|+.|+..-|+ ++....|+.+|..+|+
T Consensus       132 ~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa-~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr  208 (251)
T COG4700         132 QAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA-QGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR  208 (251)
T ss_pred             HHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh-cCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence            9988 5899999999999999999875  6778888998875 57999999999999999887 6788899999999996


Q ss_pred             Cc
Q 009385          520 ED  521 (536)
Q Consensus       520 ~E  521 (536)
                      .+
T Consensus       209 ~~  210 (251)
T COG4700         209 LR  210 (251)
T ss_pred             hh
Confidence            54

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.80  E-value=7.1e-05  Score=79.20  Aligned_cols=90  Identities=16%  Similarity=0.211  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +.+..|+..|..|++.||++..+++..|.+|. ..|+-..|+..|.+.|++.|+...+....|.++..+ |.+++|+.-|
T Consensus        52 ~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yL-AmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~-Gele~A~~DF  129 (504)
T KOG0624|consen   52 GQLSDALTHYHAAVEGDPNNYQAIFRRATVYL-AMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ-GELEQAEADF  129 (504)
T ss_pred             hhHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc-ccHHHHHHHH
Confidence            78999999999999999999999999998876 799999999999999999999999999999999875 6999999999


Q ss_pred             HHHHHhCCCCHH
Q 009385          494 LEAISADPTNSY  505 (536)
Q Consensus       494 eKALeLDPdNpe  505 (536)
                      ++.|..+|++-.
T Consensus       130 ~~vl~~~~s~~~  141 (504)
T KOG0624|consen  130 DQVLQHEPSNGL  141 (504)
T ss_pred             HHHHhcCCCcch
Confidence            999999996653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.76  E-value=4e-05  Score=83.06  Aligned_cols=58  Identities=16%  Similarity=0.031  Sum_probs=53.5

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCCcc
Q 009385          464 VEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY---AANYANFLWNTGGEDT  522 (536)
Q Consensus       464 LDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea---l~NyA~~L~elGr~E~  522 (536)
                      .+|+++++++|+|.+|+.. |+|++|+.+|++||+++|+++++   ++|+|.+|..+|+.++
T Consensus        70 ~dP~~a~a~~NLG~AL~~l-GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dE  130 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSK-GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKK  130 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence            6899999999999999875 79999999999999999999965   9999999999998654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.76  E-value=4e-05  Score=86.43  Aligned_cols=73  Identities=14%  Similarity=0.240  Sum_probs=68.4

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      .++|.+|.++|+++++++|-....|+.+|.+.+.. +++.+|.++|.+++.++|++.+++.|++..|..+|+-.
T Consensus       498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql-ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~  570 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL-EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKK  570 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH-hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhH
Confidence            57999999999999999999999999999988876 59999999999999999999999999999999998653

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.76  E-value=2.5e-05  Score=55.82  Aligned_cols=32  Identities=28%  Similarity=0.520  Sum_probs=15.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          458 FKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       458 FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      |+|||+++|+|+.+|++||.+|.. .|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence            444455555555555555544443 23444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.0001  Score=79.26  Aligned_cols=99  Identities=13%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      |+|.+|.++|..||.++|+|.    .+|.|.|.+.. ..|+..+|+...+.|+.+||....++..-|.++... +++++|
T Consensus       263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l-e~~e~A  340 (486)
T KOG0550|consen  263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL-EKWEEA  340 (486)
T ss_pred             cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            899999999999999999974    56788887776 689999999999999999999999999999988776 599999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          490 EETFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      .+.|++|++++-+ .++...+..+..
T Consensus       341 V~d~~~a~q~~~s-~e~r~~l~~A~~  365 (486)
T KOG0550|consen  341 VEDYEKAMQLEKD-CEIRRTLREAQL  365 (486)
T ss_pred             HHHHHHHHhhccc-cchHHHHHHHHH
Confidence            9999999999877 665555544443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.72  E-value=0.00016  Score=84.06  Aligned_cols=111  Identities=17%  Similarity=0.141  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV-----------  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~-----------  482 (536)
                      ++.+.|..+|-+++++||+.+.++.-+|.+|.. -.|+.+|.++|.+|.++||.++++.-..+..+.+.           
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd-~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRD-SDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            567889999999999999999999999988775 44899999999999999999988876666543321           


Q ss_pred             ------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          483 ------------------------RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       483 ------------------------~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                                              .+++-.|+..|+.|++.||++...+..+|.+|-..|++..+++
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK  617 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK  617 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH
Confidence                                    1367788999999999999999999999999999999876654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.72  E-value=3.2e-05  Score=55.28  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=26.6

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH
Q 009385          422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAE  455 (536)
Q Consensus       422 ~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAE  455 (536)
                      +|++||+++|+|+.+|++||.++. ..|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYL-NQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhhc
Confidence            478888888888888888888777 578888876

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.71  E-value=0.00029  Score=66.37  Aligned_cols=89  Identities=19%  Similarity=0.203  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----ESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----eAL~nLG~~L~e~~GD~eEA  489 (536)
                      ++.+.|++.|.+||.+-|.++.+|+|.|+.+. .+|+.++|...+.+|+++.-+-.    .++..-|.+ |+..|+.+.|
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l-yRl~g~dd~A  134 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL-YRLLGNDDAA  134 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHhCchHHH
Confidence            89999999999999999999999999999988 69999999999999999986554    456777765 4556899999


Q ss_pred             HHHHHHHHHhCCCCH
Q 009385          490 EETFLEAISADPTNS  504 (536)
Q Consensus       490 ee~feKALeLDPdNp  504 (536)
                      ..-|+.|.++-...+
T Consensus       135 R~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  135 RADFEAAAQLGSKFA  149 (175)
T ss_pred             HHhHHHHHHhCCHHH
Confidence            999999988865543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.00018  Score=76.96  Aligned_cols=87  Identities=17%  Similarity=0.240  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|.+|+....++|.++|+|.-+++-.|+++. ..++|+.|...|++|++++|+|-.+...|..+.-..+...++..+.|
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999988 69999999999999999999999999999876655554445557788


Q ss_pred             HHHHHhCC
Q 009385          494 LEAISADP  501 (536)
Q Consensus       494 eKALeLDP  501 (536)
                      .+.+..-+
T Consensus       350 ~~mF~k~~  357 (397)
T KOG0543|consen  350 ANMFAKLA  357 (397)
T ss_pred             HHHhhccc
Confidence            88777544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.70  E-value=0.00016  Score=84.17  Aligned_cols=81  Identities=14%  Similarity=0.059  Sum_probs=67.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFL  494 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~fe  494 (536)
                      ++ .+.++|...+...|++..+++.+|.+|- .+|++++|...|+++|++||+|+.++++||..|...  ++++|++++.
T Consensus        98 ~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~  173 (906)
T PRK14720         98 KW-AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLK  173 (906)
T ss_pred             ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence            44 6777777777778888899999997655 689999999999999999999999999999888764  7888888888


Q ss_pred             HHHHh
Q 009385          495 EAISA  499 (536)
Q Consensus       495 KALeL  499 (536)
                      +|++.
T Consensus       174 KAV~~  178 (906)
T PRK14720        174 KAIYR  178 (906)
T ss_pred             HHHHH
Confidence            88775

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.67  E-value=0.0004  Score=69.37  Aligned_cols=94  Identities=21%  Similarity=0.287  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP-----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~-----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eE  488 (536)
                      |+|++|..-|+.||++-|..+     -+|.|.|.++. .++..+.|++..-+||+++|.+-.|+-..|.+|-. ...|++
T Consensus       109 gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ek~ee  186 (271)
T KOG4234|consen  109 GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-MEKYEE  186 (271)
T ss_pred             ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hhhHHH
Confidence            899999999999999999865     36778887766 68999999999999999999999999999876655 468999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHH
Q 009385          489 AEETFLEAISADPTNSYYAAN  509 (536)
Q Consensus       489 Aee~feKALeLDPdNpeal~N  509 (536)
                      |++-|++.+++||.+-++.-.
T Consensus       187 aleDyKki~E~dPs~~ear~~  207 (271)
T KOG4234|consen  187 ALEDYKKILESDPSRREAREA  207 (271)
T ss_pred             HHHHHHHHHHhCcchHHHHHH
Confidence            999999999999998776443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.67  E-value=0.00035  Score=67.26  Aligned_cols=92  Identities=23%  Similarity=0.285  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhc----
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVR----  483 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~----  483 (536)
                      |+|.+|+..|++.+...|+.   +.+++.+|..++ ..|++++|...|++.++..|+++   .+++.+|..++...    
T Consensus        19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~   97 (203)
T PF13525_consen   19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL   97 (203)
T ss_dssp             T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch
Confidence            89999999999999999875   467888999988 69999999999999999999986   57888888765532    


Q ss_pred             ------CCHHHHHHHHHHHHHhCCCCHHH
Q 009385          484 ------NDLWAAEETFLEAISADPTNSYY  506 (536)
Q Consensus       484 ------GD~eEAee~feKALeLDPdNpea  506 (536)
                            +...+|+..|+..++.-|+++.+
T Consensus        98 ~~~~D~~~~~~A~~~~~~li~~yP~S~y~  126 (203)
T PF13525_consen   98 RSDRDQTSTRKAIEEFEELIKRYPNSEYA  126 (203)
T ss_dssp             -TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred             hcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence                  12468999999999999998754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.65  E-value=0.00044  Score=79.59  Aligned_cols=109  Identities=20%  Similarity=0.248  Sum_probs=92.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      +.|+..++......|-.++|+|.+.|..++.... .+|++++|.-||-|||+++|.+...++..+.++-+ .|++.+|.+
T Consensus       185 qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~-~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~-~G~~~~Am~  262 (895)
T KOG2076|consen  185 QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE-QLGNINQARYCYSRAIQANPSNWELIYERSSLYQK-TGDLKRAME  262 (895)
T ss_pred             HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-hChHHHHHH
Confidence            4589999999999999999999999999998766 68999999999999999999999999999986655 579999999


Q ss_pred             HHHHHHHhCCCCH-----HHHHHHHHHHHHcCCCcc
Q 009385          492 TFLEAISADPTNS-----YYAANYANFLWNTGGEDT  522 (536)
Q Consensus       492 ~feKALeLDPdNp-----eal~NyA~~L~elGr~E~  522 (536)
                      .|.+++.++|...     .....+++++...++.+.
T Consensus       263 ~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  263 TFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             HHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            9999999999211     123456676766665443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.64  E-value=0.00016  Score=73.39  Aligned_cols=84  Identities=17%  Similarity=0.176  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ..|..|+.+|.+||.++|..+..+.|.|..+. ..++++.++...++|++++||-+.+++.+|..+.... .+++|+..+
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~-~~~eaI~~L  101 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK-GYDEAIKVL  101 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc-cccHHHHHH
Confidence            58999999999999999999999999997766 5899999999999999999999999999999888754 799999999


Q ss_pred             HHHHHh
Q 009385          494 LEAISA  499 (536)
Q Consensus       494 eKALeL  499 (536)
                      ++|..+
T Consensus       102 qra~sl  107 (284)
T KOG4642|consen  102 QRAYSL  107 (284)
T ss_pred             HHHHHH
Confidence            999654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.00025  Score=77.22  Aligned_cols=112  Identities=20%  Similarity=0.170  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      .+..+|+++|.++..+-|++|.++..||.+|- ..||-.+|..|+-...+.-|-|.+..-.||..+.+. +-.++|+.||
T Consensus       572 ed~aqaie~~~q~~slip~dp~ilskl~dlyd-qegdksqafq~~ydsyryfp~nie~iewl~ayyidt-qf~ekai~y~  649 (840)
T KOG2003|consen  572 EDPAQAIELLMQANSLIPNDPAILSKLADLYD-QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDT-QFSEKAINYF  649 (840)
T ss_pred             hCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh-cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhh-HHHHHHHHHH
Confidence            34455555555555555555555555554433 345555555555555555555555555555444443 2468999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCFPLS  527 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~clpl~  527 (536)
                      ++|--+.|+...+....+.++.+.|.+.++|-++
T Consensus       650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            9999999999999999999999999988776543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.61  E-value=7.7e-05  Score=81.08  Aligned_cols=110  Identities=12%  Similarity=0.116  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|+.|+..|.|||+++|+++..+.|.++++. ..+++-.|+..+.+|++++|....+|+.-|..... .+++.+|...|
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~l-K~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~~~~~A~~~l   95 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHL-KVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LGEFKKALLDL   95 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhhe-eechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HHHHHHHHHHH
Confidence            69999999999999999999999999997665 68999999999999999999999999999987765 46999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH--HHHcCCCccccC
Q 009385          494 LEAISADPTNSYYAANYANF--LWNTGGEDTCFP  525 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~--L~elGr~E~clp  525 (536)
                      ++...+.|+++.+...+..+  +...-+.|..-+
T Consensus        96 ~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~  129 (476)
T KOG0376|consen   96 EKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL  129 (476)
T ss_pred             HHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence            99999999999986655444  333434444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.61  E-value=0.00012  Score=54.30  Aligned_cols=43  Identities=19%  Similarity=0.158  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN  512 (536)
Q Consensus       469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~  512 (536)
                      ++++..||.++... |++++|+++|+++++.+|+|+.++..||.
T Consensus         1 p~~~~~la~~~~~~-G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRL-GQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            46789999988774 79999999999999999999999998875

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.60  E-value=0.00089  Score=71.14  Aligned_cols=113  Identities=18%  Similarity=0.220  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHH---HHHHHHH------------HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLL---LANYAQF------------LYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eA---L~NLA~l------------L~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~  478 (536)
                      |++++|+.-|...|.-+|++...   ...++.+            .+ ..||+..|+++..+.|++.|-|+..+...+.+
T Consensus       120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~-~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc  198 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSAS-GSGDCQNAIEMITHLLEIQPWDASLRQARAKC  198 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence            89999999999999999976543   3333321            12 35799999999999999999999999999988


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc-------cccCCCC
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED-------TCFPLSS  528 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E-------~clpl~~  528 (536)
                      +.. .|++..|+.-++.|-++..+|.+.++..+.+|+..|+.+       +|+++++
T Consensus       199 ~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp  254 (504)
T KOG0624|consen  199 YIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP  254 (504)
T ss_pred             HHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence            765 579999999999999999999999999999999999864       6887765

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.59  E-value=0.00014  Score=74.53  Aligned_cols=92  Identities=17%  Similarity=0.247  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +.+.+|.-.|+......|..+.+++.+|.+.. .+|++++|++.+++|+..+|+|++++.|+..+....++..+++.+++
T Consensus       181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l-~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHL-QLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHH-HCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            35777777888766666777777777776655 57888888888888888888888888888776655543336677777


Q ss_pred             HHHHHhCCCCHHH
Q 009385          494 LEAISADPTNSYY  506 (536)
Q Consensus       494 eKALeLDPdNpea  506 (536)
                      .+....+|+++..
T Consensus       260 ~qL~~~~p~h~~~  272 (290)
T PF04733_consen  260 SQLKQSNPNHPLV  272 (290)
T ss_dssp             HHCHHHTTTSHHH
T ss_pred             HHHHHhCCCChHH
Confidence            7777778877764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.58  E-value=0.0019  Score=54.34  Aligned_cols=103  Identities=25%  Similarity=0.338  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEP---NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP-DAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdP---dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd-daeAL~nLG~~L~e~~GD~eEA  489 (536)
                      +++++|...|.+++..+|   .....+..++..+. ..+++++|...+.+++...|. ...++..++..+.. .+++++|
T Consensus       144 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a  221 (291)
T COG0457         144 GDYEEALELYEKALELDPELNELAEALLALGALLE-ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LGKYEEA  221 (291)
T ss_pred             CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH-HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cccHHHH
Confidence            677777777777777666   34445555554433 467777777777777777777 57777777766654 3467777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      ..++.+++...|........++..+...|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (291)
T COG0457         222 LEYYEKALELDPDNAEALYNLALLLLELG  250 (291)
T ss_pred             HHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence            77777777777776556666666665444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.54  E-value=0.0012  Score=62.05  Aligned_cols=92  Identities=16%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCC--
Q 009385          414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRND--  485 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~GD--  485 (536)
                      |+|.+|++.|+......|..+   .+...++.+++ ..+++++|...+++-|+++|+|+   .+++..|...+.+. +  
T Consensus        24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~-~~~  101 (142)
T PF13512_consen   24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD-EGS  101 (142)
T ss_pred             CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh-hhH
Confidence            899999999999999998865   56777888888 69999999999999999999997   46777777666643 3  


Q ss_pred             -------------HHHHHHHHHHHHHhCCCCHHHH
Q 009385          486 -------------LWAAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       486 -------------~eEAee~feKALeLDPdNpeal  507 (536)
                                   ..+|...|++.|+.-|++..+.
T Consensus       102 ~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen  102 LQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             HhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence                         7899999999999999987653

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.53  E-value=0.00034  Score=70.90  Aligned_cols=105  Identities=22%  Similarity=0.313  Sum_probs=61.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFL  494 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~fe  494 (536)
                      ..+.|...|.+|++..+-+..+|..+|.+-+...+|.+.|.+.|+++++.-|.+.+.+..|..++... +|.+.|..+|+
T Consensus        16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~-~d~~~aR~lfe   94 (280)
T PF05843_consen   16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL-NDINNARALFE   94 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-HHHHHHHHH
T ss_pred             ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            35666666777765445556666666665442245555577777777777777777766666666654 46677777777


Q ss_pred             HHHHhCCCCH---HHHHHHHHHHHHcCCC
Q 009385          495 EAISADPTNS---YYAANYANFLWNTGGE  520 (536)
Q Consensus       495 KALeLDPdNp---eal~NyA~~L~elGr~  520 (536)
                      +++..-|...   .++..|..+-...|+.
T Consensus        95 r~i~~l~~~~~~~~iw~~~i~fE~~~Gdl  123 (280)
T PF05843_consen   95 RAISSLPKEKQSKKIWKKFIEFESKYGDL  123 (280)
T ss_dssp             HHCCTSSCHHHCHHHHHHHHHHHHHHS-H
T ss_pred             HHHHhcCchhHHHHHHHHHHHHHHHcCCH
Confidence            7766655444   3455555555555543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00035  Score=75.41  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------------------------------HhCCHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---------------------------------VAHDYDRAEEYFKR  460 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---------------------------------~~GD~deAEe~FeK  460 (536)
                      |++++|+..|+++.-+||.+....--||.++..                                 ..+++.+|..+-+|
T Consensus       246 Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK  325 (564)
T KOG1174|consen  246 GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEK  325 (564)
T ss_pred             cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            777777777777777777777766666655431                                 23466778888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          461 AIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       461 ALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +|+.+|++..++..-|.+|... ++.++|+..|+.|+.+.|-.-..+..+-+.|...|+..+
T Consensus       326 ~I~~~~r~~~alilKG~lL~~~-~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  326 CIDSEPRNHEALILKGRLLIAL-ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             HhccCcccchHHHhccHHHHhc-cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence            8888888888888888877654 588888888888888888888888888887777776543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.52  E-value=0.00033  Score=70.60  Aligned_cols=128  Identities=18%  Similarity=0.244  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 009385          368 REEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV  447 (536)
Q Consensus       368 ~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~  447 (536)
                      =|+||     |++..+++-. ...+.+|..+++.-.-.+-  -|-.|-..-|.--|.++|.++|+-+++++-+|..+. .
T Consensus        41 lqqEV-----~iarlsqlL~-~~~l~~eeRA~l~fERGvl--YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~  111 (297)
T COG4785          41 LQQEV-----ILARMSQILA-SRALTDEERAQLLFERGVL--YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-Q  111 (297)
T ss_pred             HHHHH-----HHHHHHHHHH-hccCChHHHHHHHHHhcch--hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-h
Confidence            35666     3333333222 3456666666554422111  134478888999999999999999999999996555 6


Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385          448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY  505 (536)
Q Consensus       448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe  505 (536)
                      .|+++.|.+.|.-.+++||.+-.++.|-|..++- +|++.-|.+-|.+--+.||++|.
T Consensus       112 a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         112 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             cccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHhhHHHHHHHHhcCCCChH
Confidence            8999999999999999999999999999988775 57999999999999999999985

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.46  E-value=0.00044  Score=70.91  Aligned_cols=105  Identities=16%  Similarity=0.023  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH--DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G--D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      ++++.|.+.++++-+.+.+.......-|.+.. ..|  .+.+|.-.|+...+..|..+..++.++.+... .|++++|+.
T Consensus       145 ~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~  222 (290)
T PF04733_consen  145 NRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEE  222 (290)
T ss_dssp             T-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHH
Confidence            79999999999998887765544444443433 334  59999999999888778999999999988876 579999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      .+++|++.+|+++..+.|+..+...+|+.
T Consensus       223 ~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  223 LLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999976

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.45  E-value=0.00031  Score=47.99  Aligned_cols=33  Identities=27%  Similarity=0.506  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD  468 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd  468 (536)
                      .+++.+|.+++ ..|++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence            34445554444 3455555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.44  E-value=0.0016  Score=68.59  Aligned_cols=93  Identities=13%  Similarity=0.069  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+.++|..++.||++.||++..+-..+|.+.. ..|+|++|++.++++++.||+.. +++..|-.+|.. .|+.++.+..
T Consensus       194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~~~~f  271 (389)
T COG2956         194 SDVDRARELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAEGLNF  271 (389)
T ss_pred             hhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHHHHHH
Confidence            68999999999999999999999999999987 68999999999999999999984 677777776665 4799999999


Q ss_pred             HHHHHHhCCCCHHHHH
Q 009385          493 FLEAISADPTNSYYAA  508 (536)
Q Consensus       493 feKALeLDPdNpeal~  508 (536)
                      +.++++..++....+.
T Consensus       272 L~~~~~~~~g~~~~l~  287 (389)
T COG2956         272 LRRAMETNTGADAELM  287 (389)
T ss_pred             HHHHHHccCCccHHHH
Confidence            9999999887654433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.44  E-value=0.001  Score=66.37  Aligned_cols=85  Identities=15%  Similarity=-0.006  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---
Q 009385          432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESF---SKYASFLWRVRNDLWAAEETFLEAISADPTNSY---  505 (536)
Q Consensus       432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL---~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe---  505 (536)
                      ..+..++..|.-++ ..|++++|++.|++++...|+.+.+.   ..+|.+++.. +++++|+.+|++.++..|+++.   
T Consensus        30 ~~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~-~~y~~A~~~~e~fi~~~P~~~~~~~  107 (243)
T PRK10866         30 NPPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLNPTHPNIDY  107 (243)
T ss_pred             CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCcCCCchHH
Confidence            35666777787777 58999999999999999999998665   8899988875 6999999999999999999875   


Q ss_pred             HHHHHHHHHHHcC
Q 009385          506 YAANYANFLWNTG  518 (536)
Q Consensus       506 al~NyA~~L~elG  518 (536)
                      +++..|......+
T Consensus       108 a~Y~~g~~~~~~~  120 (243)
T PRK10866        108 VLYMRGLTNMALD  120 (243)
T ss_pred             HHHHHHHhhhhcc
Confidence            4566666554444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.41  E-value=0.00026  Score=48.94  Aligned_cols=32  Identities=28%  Similarity=0.542  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP  467 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd  467 (536)
                      .+|+++|.++. .+|++++|+.+|++||+++|+
T Consensus         2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcC
Confidence            34555555444 355555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.39  E-value=0.0012  Score=71.02  Aligned_cols=80  Identities=24%  Similarity=0.321  Sum_probs=73.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++..+|++.+.++|..+|.+..++...|.++. ..++++.|+++.++|+.+.|++-..|+.|+.+|... |++++|+..+
T Consensus       214 ~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~-~d~e~ALlaL  291 (395)
T PF09295_consen  214 NEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL-GDFENALLAL  291 (395)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence            56789999999999999999999999999988 689999999999999999999999999999988875 6999999766


Q ss_pred             HH
Q 009385          494 LE  495 (536)
Q Consensus       494 eK  495 (536)
                      ..
T Consensus       292 Ns  293 (395)
T PF09295_consen  292 NS  293 (395)
T ss_pred             hc
Confidence            53

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03077 Protein ECB2; Provisional

Probab=97.38  E-value=0.0017  Score=74.51  Aligned_cols=107  Identities=11%  Similarity=0.065  Sum_probs=86.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      ..|+.++|.++|+...+..+-  +...|..+..++. ..|++++|++.+++. .+.|+ +.+|..|-..+. ..++.+.|
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~-~~~~~e~~  676 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNACR-IHRHVELG  676 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHH-HcCChHHH
Confidence            348999999999998855322  4567777887777 689999999999985 46665 556666555443 46799999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +...+++++++|+++.++..++++|...|+.++
T Consensus       677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~  709 (857)
T PLN03077        677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDE  709 (857)
T ss_pred             HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH
Confidence            999999999999999999999999999998654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.37  E-value=0.00062  Score=79.29  Aligned_cols=91  Identities=16%  Similarity=0.183  Sum_probs=80.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV--RNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~--~GD~eEAee  491 (536)
                      .+|++|++..+++|+.||+|..++.-+|..++...++.++|.+.|..|.+++|++.-||-.|+.++-..  -.+++++-.
T Consensus        16 k~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~~dIl~ld~~~~   95 (1238)
T KOG1127|consen   16 KEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERYNDILDLDRAAK   95 (1238)
T ss_pred             ccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHccchhhhhhHhHH
Confidence            799999999999999999999999999999886556699999999999999999999999999865431  136899999


Q ss_pred             HHHHHHHhCCCCH
Q 009385          492 TFLEAISADPTNS  504 (536)
Q Consensus       492 ~feKALeLDPdNp  504 (536)
                      +|++++-+.|+..
T Consensus        96 ~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   96 CYQRAVLILENQS  108 (1238)
T ss_pred             HHHHHHHhhhhhh
Confidence            9999998877654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.32  E-value=0.0069  Score=50.96  Aligned_cols=88  Identities=25%  Similarity=0.376  Sum_probs=80.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPN-DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPd-n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      .+++.+|+..+.+++...+. ....+.+++..+. ..+++++|..++.+++...|.....+..++..+. ..+++++|..
T Consensus       180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  257 (291)
T COG0457         180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYL-KLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALE  257 (291)
T ss_pred             hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHH-HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHH
Confidence            37999999999999999999 7999999998777 5889999999999999999998888888888887 5678999999


Q ss_pred             HHHHHHHhCCC
Q 009385          492 TFLEAISADPT  502 (536)
Q Consensus       492 ~feKALeLDPd  502 (536)
                      .+.+++..+|.
T Consensus       258 ~~~~~~~~~~~  268 (291)
T COG0457         258 ALEKALELDPD  268 (291)
T ss_pred             HHHHHHHhCcc
Confidence            99999999998

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.32  E-value=0.00078  Score=65.73  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          451 YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR---------NDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       451 ~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~---------GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      ++.|.+.++.....+|+|++++++.|.+|.++.         .-+++|+.-|++||.++|+...+++++|++|...+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            678999999999999999999999999887752         136789999999999999999999999999988774

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0017  Score=66.61  Aligned_cols=91  Identities=20%  Similarity=0.291  Sum_probs=78.2

Q ss_pred             CCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ--------EPNDP----------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKY  475 (536)
Q Consensus       414 gdyeeAee~YqKALeL--------dPdn~----------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nL  475 (536)
                      ++|++|+..|+.||..        .|.++          .++.||++.+. ..|+|-++++.....|..+|.|..||+.-
T Consensus       192 ~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~frR  270 (329)
T KOG0545|consen  192 GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYFRR  270 (329)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            7888999988888643        56655          47889999877 68999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385          476 ASFLWRVRNDLWAAEETFLEAISADPTNSYY  506 (536)
Q Consensus       476 G~~L~e~~GD~eEAee~feKALeLDPdNpea  506 (536)
                      |......- +..+|++-|.++++++|.-...
T Consensus       271 akAhaa~W-n~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  271 AKAHAAVW-NEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHHHhhc-CHHHHHHHHHHHHhcChhhHHH
Confidence            98877665 7999999999999999976544

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.30  E-value=0.00055  Score=46.76  Aligned_cols=34  Identities=26%  Similarity=0.378  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385          469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN  503 (536)
Q Consensus       469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN  503 (536)
                      +.+++.+|.+++.. |++++|+++|++|++++|+|
T Consensus         1 a~~~~~lg~~~~~~-~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQL-GNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHCcCC
Confidence            56899999998875 69999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.26  E-value=0.0026  Score=69.97  Aligned_cols=94  Identities=17%  Similarity=0.255  Sum_probs=82.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFL  494 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~fe  494 (536)
                      =..+-...|++|+...+.|+.+|.+|..+.. ..+.+.+-.+.|.++|..+|++++.|...|.-.++.+-+.+.|.++|.
T Consensus        86 i~~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   86 IPNRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            3445677999999999999999999987655 566799999999999999999999999999888887766999999999


Q ss_pred             HHHHhCCCCHHHHHH
Q 009385          495 EAISADPTNSYYAAN  509 (536)
Q Consensus       495 KALeLDPdNpeal~N  509 (536)
                      ++|+.+|++|..+.-
T Consensus       165 rgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKE  179 (568)
T ss_pred             HHhhcCCCChHHHHH
Confidence            999999999987543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.22  E-value=0.00054  Score=47.36  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385          469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN  503 (536)
Q Consensus       469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN  503 (536)
                      +.+|+++|.++... |++++|+.+|++|++++|+|
T Consensus         1 a~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQL-GDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHh-CCchHHHHHHHHHHHHCcCC
Confidence            46899999988775 69999999999999999985

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.22  E-value=0.00085  Score=70.49  Aligned_cols=64  Identities=20%  Similarity=0.405  Sum_probs=42.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      .|+.++|..+|+.|++++|++++++..+|++.. ..++.-+|..||-+||.++|.|.+++.+-+.
T Consensus       129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E-~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFRE-MHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHH-hhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            366677777777777777777777777776655 3566666777777777777777776666554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.002  Score=65.97  Aligned_cols=84  Identities=24%  Similarity=0.239  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 009385          437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN---SYYAANY  510 (536)
Q Consensus       437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN---peal~Ny  510 (536)
                      +++.|.-++ ..|||+.|+..|..-|+..|+.   ++++++||..++.+ |++++|...|..+++--|++   |+.++.+
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            677777677 5899999999999999999998   58999999999975 69999999999999988776   5779999


Q ss_pred             HHHHHHcCCCcc
Q 009385          511 ANFLWNTGGEDT  522 (536)
Q Consensus       511 A~~L~elGr~E~  522 (536)
                      |.++.++|+.|+
T Consensus       222 g~~~~~l~~~d~  233 (262)
T COG1729         222 GVSLGRLGNTDE  233 (262)
T ss_pred             HHHHHHhcCHHH
Confidence            999999998654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.18  E-value=0.002  Score=71.38  Aligned_cols=82  Identities=29%  Similarity=0.347  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          438 ANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       438 ~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~el  517 (536)
                      +.+|+.+. ..|++++|.++.++||+..|..++.|...|.+|-+ .|++++|.++++.|..+|+.|-.+-...+.++.+.
T Consensus       198 ~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa  275 (517)
T PF12569_consen  198 YFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA  275 (517)
T ss_pred             HHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence            34455444 46777777777777777777777777777776655 35777777777777777777766666666666676


Q ss_pred             CCCc
Q 009385          518 GGED  521 (536)
Q Consensus       518 Gr~E  521 (536)
                      |+.+
T Consensus       276 ~~~e  279 (517)
T PF12569_consen  276 GRIE  279 (517)
T ss_pred             CCHH
Confidence            6654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.13  E-value=0.0042  Score=69.80  Aligned_cols=108  Identities=11%  Similarity=0.022  Sum_probs=85.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .|+.++|.++|+...+..+-  +...|..+..+|. ..|++++|++.+++. ...| +...|..+...+.. .|+++.|+
T Consensus       439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~-r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~-~g~~~~a~  514 (697)
T PLN03081        439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG-REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI-HKNLELGR  514 (697)
T ss_pred             CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH-hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-cCCcHHHH
Confidence            38999999999999875332  3445666777777 689999999999875 2344 45667777766655 57999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      ..+++.++++|++...+..+.++|...|+.+++.
T Consensus       515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence            9999999999999888899999999999876443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.12  E-value=0.0025  Score=71.99  Aligned_cols=104  Identities=14%  Similarity=0.073  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++.++|+++++++|+..|+...+|..+|+++. .+++.+.|.+.|...++.-|+....|..|+.+- +..|.+-+|...+
T Consensus       665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e-~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~il  742 (913)
T KOG0495|consen  665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEE-QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSIL  742 (913)
T ss_pred             hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHH-HHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHH
Confidence            57777888888888888888888888887766 577788888888888888888877777777643 3445777888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      ++|.--+|+|+..+...-.+-.+.|.
T Consensus       743 drarlkNPk~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  743 DRARLKNPKNALLWLESIRMELRAGN  768 (913)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHcCC
Confidence            88888888887766665555566664

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.10  E-value=0.00063  Score=54.73  Aligned_cols=50  Identities=24%  Similarity=0.406  Sum_probs=41.9

Q ss_pred             CCHHHHHHHHHHHHHh---C-CCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009385          414 ADYFRTELLYQTGLAQ---E-PND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAV  464 (536)
Q Consensus       414 gdyeeAee~YqKALeL---d-Pdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeL  464 (536)
                      |++++|+.+|++|+.+   . +++   ..++.++|.++. ..|++++|+++|++|+++
T Consensus        19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen   19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence            8999999999999976   2 222   567889998888 699999999999999986

...

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.10  E-value=0.0054  Score=69.45  Aligned_cols=113  Identities=20%  Similarity=0.292  Sum_probs=91.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------------------------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-------------------------  468 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-------------------------  468 (536)
                      +..-+|...+.++...||+|..+|...-++-+ ..|..+.|+...-+||+--|++                         
T Consensus       733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~El-R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk  811 (913)
T KOG0495|consen  733 GQLVRARSILDRARLKNPKNALLWLESIRMEL-RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK  811 (913)
T ss_pred             cchhhHHHHHHHHHhcCCCcchhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence            68889999999999999999999977666655 5899999999888888766554                         


Q ss_pred             -----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------CccccCCCC
Q 009385          469 -----AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG----------EDTCFPLSS  528 (536)
Q Consensus       469 -----aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr----------~E~clpl~~  528 (536)
                           +.++...|.++|..+ ++++|.++|.+|++++|++-.++..+-.+....|.          .++|-|.+-
T Consensus       812 kce~dphVllaia~lfw~e~-k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG  885 (913)
T KOG0495|consen  812 KCEHDPHVLLAIAKLFWSEK-KIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHG  885 (913)
T ss_pred             hccCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCC
Confidence                 455566777777654 89999999999999999999998888888888883          356666654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.99  E-value=0.0063  Score=58.64  Aligned_cols=83  Identities=16%  Similarity=0.094  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---H
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY---Y  506 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe---a  506 (536)
                      .+..++..|..++ ..|++++|++.|++.+...|+.   +.+...+|..++.. |++++|+..|++-++..|+++.   +
T Consensus         4 ~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-GDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             -HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            4677888898877 6999999999999999998876   47899999998875 6999999999999999999874   5


Q ss_pred             HHHHHHHHHHc
Q 009385          507 AANYANFLWNT  517 (536)
Q Consensus       507 l~NyA~~L~el  517 (536)
                      ++..|..++..
T Consensus        82 ~Y~~g~~~~~~   92 (203)
T PF13525_consen   82 LYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            66677666554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.98  E-value=0.0047  Score=68.53  Aligned_cols=111  Identities=22%  Similarity=0.215  Sum_probs=91.1

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      ..|++++|+.+..+||+..|..+++|...|.++- ..|++++|.++++.|-.+|+.|-..-...+..+.+ .|+.++|++
T Consensus       206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-a~~~e~A~~  283 (517)
T PF12569_consen  206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-AGRIEEAEK  283 (517)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-CCCHHHHHH
Confidence            3489999999999999999999999999999987 69999999999999999999999998888877765 579999999


Q ss_pred             HHHHHHHhC--CCC-------HHHHHHHHHHHHHcCCCcccc
Q 009385          492 TFLEAISAD--PTN-------SYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       492 ~feKALeLD--PdN-------peal~NyA~~L~elGr~E~cl  524 (536)
                      .+..-.+-+  |..       .++....|..+.+.|++..++
T Consensus       284 ~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL  325 (517)
T PF12569_consen  284 TASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL  325 (517)
T ss_pred             HHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            998887655  221       123345677777777654433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.98  E-value=0.0024  Score=64.80  Aligned_cols=86  Identities=20%  Similarity=0.301  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L  514 (536)
                      .+|..|.+++. ..+..+.|...|++|++..+-+.++|..+|.+-+...++.+.|...|+++++.-|.++.++..|..+|
T Consensus         2 ~v~i~~m~~~~-r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMR-RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            46778888877 45669999999999997667788999999988777667888899999999999999999999999999


Q ss_pred             HHcCCCc
Q 009385          515 WNTGGED  521 (536)
Q Consensus       515 ~elGr~E  521 (536)
                      ...|+.+
T Consensus        81 ~~~~d~~   87 (280)
T PF05843_consen   81 IKLNDIN   87 (280)
T ss_dssp             HHTT-HH
T ss_pred             HHhCcHH
Confidence            9999753

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.96  E-value=0.01  Score=63.70  Aligned_cols=81  Identities=25%  Similarity=0.304  Sum_probs=37.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++..=++..++.++..|+++.++..+|++++ ..+.+.+|..+|+.|+...|. +..+..+|.++-.. |+..+|.+.+
T Consensus       308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~-k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~-g~~~~A~~~r  384 (400)
T COG3071         308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLAL-KNKLWGKASEALEAALKLRPS-ASDYAELADALDQL-GEPEEAEQVR  384 (400)
T ss_pred             CCchHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHc-CChHHHHHHH
Confidence            34444444444555555555555555554444 344455555555555544443 22233444444332 3455555555


Q ss_pred             HHHH
Q 009385          494 LEAI  497 (536)
Q Consensus       494 eKAL  497 (536)
                      ++++
T Consensus       385 ~e~L  388 (400)
T COG3071         385 REAL  388 (400)
T ss_pred             HHHH
Confidence            5544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.91  E-value=0.0049  Score=58.31  Aligned_cols=82  Identities=22%  Similarity=0.187  Sum_probs=69.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 009385          441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS----YYAANYANFLWN  516 (536)
Q Consensus       441 A~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp----eal~NyA~~L~e  516 (536)
                      |..+. ..|+++.|++.|.++|.+-|.++.+|+|-+..+.. .|+.++|.+-+.+|+++.-+-.    +++...|.+|..
T Consensus        50 ~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   50 AIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            44555 47999999999999999999999999999998765 5799999999999999976554    356778899999


Q ss_pred             cCCCcccc
Q 009385          517 TGGEDTCF  524 (536)
Q Consensus       517 lGr~E~cl  524 (536)
                      .|+.|++.
T Consensus       128 ~g~dd~AR  135 (175)
T KOG4555|consen  128 LGNDDAAR  135 (175)
T ss_pred             hCchHHHH
Confidence            99876543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.90  E-value=0.00087  Score=70.40  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=60.2

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANF  513 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~  513 (536)
                      ..|+.++|...|+.|+.++|+|++++..+|.|.-+ .++.-+|-.||-+|+.++|.|.+++.|.+..
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            58999999999999999999999999999998765 4699999999999999999999998886643

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.80  E-value=0.011  Score=67.38  Aligned_cols=109  Identities=18%  Similarity=0.121  Sum_probs=82.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDP-----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~-----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      .|++++|..+++++++..|...     .++.++|.+++ ..|++++|+.++++++......      ..++.++|.+++.
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            3799999999999999655432     35566777766 6899999999999999864322      2456778887776


Q ss_pred             hcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCCccc
Q 009385          482 VRNDLWAAEETFLEAISADPT--------NSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPd--------Npeal~NyA~~L~elGr~E~c  523 (536)
                       .|++++|+.++++++++...        ....+..+|.+++..|+.+.+
T Consensus       544 -~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  592 (903)
T PRK04841        544 -QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA  592 (903)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence             57999999999999986221        223455788899999987654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.79  E-value=0.0085  Score=66.14  Aligned_cols=103  Identities=17%  Similarity=0.094  Sum_probs=71.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC---------------------C----
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP---------------------D----  468 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd---------------------d----  468 (536)
                      .+..+-+++.++||+++|+.+.+|.-||.   +...-..+|+++|+||++....                     +    
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAE---EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAE---EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhccc---ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            57777777888888888888888876663   2244567777777777764210                     1    


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCC
Q 009385          469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPT--NSYYAANYANFLWNTGGE  520 (536)
Q Consensus       469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd--Npeal~NyA~~L~elGr~  520 (536)
                      ..+...||.++++. |+.+||++.|+..++..|.  +-.++.|+...|.+++++
T Consensus       259 ~y~KrRLAmCarkl-Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y  311 (539)
T PF04184_consen  259 VYAKRRLAMCARKL-GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY  311 (539)
T ss_pred             hhhHHHHHHHHHHh-CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence            22345667777664 5888888888888887765  345778888888888865

The molecular function of this protein is uncertain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.76  E-value=0.012  Score=63.10  Aligned_cols=104  Identities=15%  Similarity=0.109  Sum_probs=87.4

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      +-+++++|.+..+.+++..-+.. +..-++.+   .-+|...=++..++.++.+|+++..+..||.+++.. +.+.+|..
T Consensus       275 ~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l---~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~-~~w~kA~~  349 (400)
T COG3071         275 RLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL---RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN-KLWGKASE  349 (400)
T ss_pred             HcCChHHHHHHHHHHHHhccChh-HHHHHhhc---CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh-hHHHHHHH
Confidence            45899999999999999876544 44445532   468999999999999999999999999999988764 69999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +|+.|++..|+.. .+..+|+++-.+|+.+
T Consensus       350 ~leaAl~~~~s~~-~~~~la~~~~~~g~~~  378 (400)
T COG3071         350 ALEAALKLRPSAS-DYAELADALDQLGEPE  378 (400)
T ss_pred             HHHHHHhcCCChh-hHHHHHHHHHHcCChH
Confidence            9999999988754 4677999999999753

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.74  E-value=0.011  Score=55.67  Aligned_cols=83  Identities=16%  Similarity=0.064  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---H
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY---A  507 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea---l  507 (536)
                      +..+++-|.-.. ..|+|++|++.|+......|...   .+...++..++.. +++++|+..+++-|++.|+++.+   +
T Consensus        10 ~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~-~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ-GDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            456777787666 58999999999999999998875   6788999999875 69999999999999999999853   5


Q ss_pred             HHHHHHHHHcC
Q 009385          508 ANYANFLWNTG  518 (536)
Q Consensus       508 ~NyA~~L~elG  518 (536)
                      +..|...+++.
T Consensus        88 Y~~gL~~~~~~   98 (142)
T PF13512_consen   88 YMRGLSYYEQD   98 (142)
T ss_pred             HHHHHHHHHHh
Confidence            55555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.72  E-value=0.057  Score=48.46  Aligned_cols=62  Identities=24%  Similarity=0.238  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAIS  498 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALe  498 (536)
                      .++..++..+. ..|++++|+..+++++.++|.|-.++..+-.++... |+..+|+..|++..+
T Consensus        63 ~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~-g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   63 DALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ-GRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT-T-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence            46666776666 689999999999999999999999999998888764 699999999998755

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.62  E-value=0.003  Score=63.87  Aligned_cols=74  Identities=26%  Similarity=0.279  Sum_probs=65.1

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ..|=.+-|.-.|.++|.+.|+-+++++.+|..+.. .|+++.|.+.|+..+++||.+-.++.|.|..++--|+++
T Consensus        77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~  150 (297)
T COG4785          77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK  150 (297)
T ss_pred             hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence            45666677788999999999999999999987765 579999999999999999999999999999888888763

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.59  E-value=0.043  Score=65.75  Aligned_cols=108  Identities=15%  Similarity=0.048  Sum_probs=51.0

Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQE-PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLd-Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      |++++|.+.|++..+.+ +.+...|+.+...|. ..|++++|.+.|++..+.  .|+ ...|..+...+.. .|++++|.
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k-~G~~eeA~  669 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH-AGDLDKAF  669 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-CCCHHHHH
Confidence            45555555555555443 223444444444433 345555555555555443  232 3344444444443 24555555


Q ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCcccc
Q 009385          491 ETFLEAISAD-PTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       491 e~feKALeLD-PdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      ++|++..+.. +-+...+..+...|.+.|+.+++.
T Consensus       670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            5555555532 223344555555555555555443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.59  E-value=0.004  Score=66.38  Aligned_cols=93  Identities=18%  Similarity=0.161  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      +-..|.-|+ .+|.|++|+.||-+++.++|.|+-.+.|.|..|+.++ ++..|+.-...|+.+|-.+..+|...+.+-..
T Consensus       100 iKE~GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen  100 IKERGNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-SFAQAEEDCEAAIALDKLYVKAYSRRMQARES  177 (536)
T ss_pred             HHHhhhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH-HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            344677777 6999999999999999999999999999999888875 89999999999999999888777766666655


Q ss_pred             cC-------CCccccCCCCCCC
Q 009385          517 TG-------GEDTCFPLSSPDS  531 (536)
Q Consensus       517 lG-------r~E~clpl~~~~~  531 (536)
                      +|       ++|..+.|++..+
T Consensus       178 Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  178 LGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             HhhHHHHHHhHHHHHhhCcccH
Confidence            55       4566777766543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.56  E-value=0.0041  Score=42.70  Aligned_cols=30  Identities=30%  Similarity=0.552  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEP  466 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDP  466 (536)
                      +|+.+|.++. ..|++++|.++|+++++++|
T Consensus         3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYE-QLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHH-HTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC
Confidence            4444554444 34555555555555555555

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.53  E-value=0.0061  Score=61.49  Aligned_cols=88  Identities=22%  Similarity=0.209  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQE--PND----PLLLANYAQFLYIVA-HDYDRAEEYFKRAIAVEP--PD----AESFSKYASFLWR  481 (536)
Q Consensus       415 dyeeAee~YqKALeLd--Pdn----~eAL~NLA~lL~e~~-GD~deAEe~FeKALeLDP--dd----aeAL~nLG~~L~e  481 (536)
                      ++.+|+.+|++|+.+.  -++    ..++.++|.++. .. +++++|.++|++|+++--  +.    ...+..+|.++..
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye-~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE-EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC-CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            5555666666665552  111    234455555444 23 566666666666665521  11    1234455555544


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCH
Q 009385          482 VRNDLWAAEETFLEAISADPTNS  504 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdNp  504 (536)
                      . |+|++|++.|++.....-+++
T Consensus       168 l-~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  168 L-GRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             T-T-HHHHHHHHHHHHHTCCCHC
T ss_pred             h-CCHHHHHHHHHHHHHHhhccc
Confidence            3 356666666666655544433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.49  E-value=0.021  Score=65.21  Aligned_cols=109  Identities=16%  Similarity=0.093  Sum_probs=82.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP--------DAESFSKYASF  478 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd--------daeAL~nLG~~  478 (536)
                      .|++++|..+|++++......      ..++.++|.+++ ..|++++|+.++++++.+-..        ....+..+|.+
T Consensus       504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  582 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL  582 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            389999999999999764321      245667888877 689999999999999986321        23446677888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCCccc
Q 009385          479 LWRVRNDLWAAEETFLEAISADPT-----NSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPd-----Npeal~NyA~~L~elGr~E~c  523 (536)
                      ++.. |++++|..++++++.+...     .+..+.+++.++...|+.+.+
T Consensus       583 ~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  631 (903)
T PRK04841        583 LWEW-ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA  631 (903)
T ss_pred             HHHh-cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence            8775 7999999999999886432     234566788888899986544

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.47  E-value=0.064  Score=64.34  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=88.2

Q ss_pred             cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          413 YADYFRTELLYQTGLAQ--EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       413 ~gdyeeAee~YqKALeL--dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      .|++++|..+|.+..+.  .|+ ...|..+...+. ..|++++|.++|++.++.. +.|...++.+...|.+. |++++|
T Consensus       627 ~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~-k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~-G~~eeA  703 (1060)
T PLN03218        627 KGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG-HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA-KNWKKA  703 (1060)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHH
Confidence            38999999999998887  564 667777777766 6899999999999999875 45678888888888764 699999


Q ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCccccCC
Q 009385          490 EETFLEAISA--DPTNSYYAANYANFLWNTGGEDTCFPL  526 (536)
Q Consensus       490 ee~feKALeL--DPdNpeal~NyA~~L~elGr~E~clpl  526 (536)
                      +++|++..+.  .|+ ...+..+...|.+.|+.++++.+
T Consensus       704 ~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlel  741 (1060)
T PLN03218        704 LELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEV  741 (1060)
T ss_pred             HHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999988764  554 45678888889999998877654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.011  Score=61.29  Aligned_cols=105  Identities=21%  Similarity=0.251  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hC--CCCHHHHHHHHHHHHHhcCCH
Q 009385          414 ADYFRTELLYQTGLAQE-PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA----VE--PPDAESFSKYASFLWRVRNDL  486 (536)
Q Consensus       414 gdyeeAee~YqKALeLd-Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe----LD--PddaeAL~nLG~~L~e~~GD~  486 (536)
                      ++|.-....|.+.++.+ |.++.+...+|.+.. ..||.+.|+.+|++.-+    ++  -++..++.+.+.++.- .+++
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg-~nn~  268 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLG-QNNF  268 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheec-ccch
Confidence            67777888888888887 667888888888766 47888888888884332    22  2334456666655543 3578


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          487 WAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       487 eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      .+|...|.+.++.||.++.+..|-|.++.-+|+.
T Consensus       269 a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  269 AEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             HHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            8888888888888888888888888888888865

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.43  E-value=0.022  Score=64.11  Aligned_cols=105  Identities=15%  Similarity=0.037  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--EPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--DPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      |++++|.+.|++..+  | |...|+.+...|. ..|+.++|++.|++.++.  .|+. ..+..+-..+.+ .|++++|.+
T Consensus       374 G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~-~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~-~g~~~~a~~  447 (697)
T PLN03081        374 GRMEDARNVFDRMPR--K-NLISWNALIAGYG-NHGRGTKAVEMFERMIAEGVAPNH-VTFLAVLSACRY-SGLSEQGWE  447 (697)
T ss_pred             CCHHHHHHHHHhCCC--C-CeeeHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhc-CCcHHHHHH
Confidence            556666666655432  2 4445555554444 456666666666665543  2432 223333333333 346666666


Q ss_pred             HHHHHHHh---CCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          492 TFLEAISA---DPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       492 ~feKALeL---DPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      +|++..+.   .|+ ...+..+...|.+.|+.++++.
T Consensus       448 ~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA~~  483 (697)
T PLN03081        448 IFQSMSENHRIKPR-AMHYACMIELLGREGLLDEAYA  483 (697)
T ss_pred             HHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHHHH
Confidence            66666542   222 2344556666666666655543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.37  E-value=0.0059  Score=41.91  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385          469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTN  503 (536)
Q Consensus       469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN  503 (536)
                      +.+++.+|.++.. .|++++|+.+|+++++++|+|
T Consensus         1 a~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    1 AEAYYNLGKIYEQ-LGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             -HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            3678999998876 579999999999999999965

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.33  E-value=0.0063  Score=61.40  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=66.5

Q ss_pred             CCHHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQE-----PND-PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPD----AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLd-----Pdn-~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--Pdd----aeAL~nLG~~L~e  481 (536)
                      +++++|..+|.+|..+.     +.+ ...+.+.+.++. ... +++|+.+|++|+++-  -++    +..+.++|.++..
T Consensus        49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~-~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~  126 (282)
T PF14938_consen   49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGD-PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE  126 (282)
T ss_dssp             T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred             hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhC-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            56666666666665552     222 455555555544 345 347777777777762  222    3567788876654


Q ss_pred             hcCCHHHHHHHHHHHHHhC--CCCH----HHHHHHHHHHHHcCCCcccc
Q 009385          482 VRNDLWAAEETFLEAISAD--PTNS----YYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLD--PdNp----eal~NyA~~L~elGr~E~cl  524 (536)
                      ..+++++|+++|++|+++-  -+.+    ..+.++|.++..+|+++++.
T Consensus       127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~  175 (282)
T PF14938_consen  127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI  175 (282)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            3168999999999999862  2222    34678899999999876543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.31  E-value=0.029  Score=61.28  Aligned_cols=106  Identities=24%  Similarity=0.189  Sum_probs=87.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----ESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----eAL~nLG~~L~e~~GD~eE  488 (536)
                      ..+.+.|++.++..++..|+....++..|+++. ..|+.++|++.|++++.....-.    -.++.+|..+..+ .++++
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~-~~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ-HDWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH-chHHH
Confidence            468999999999999999999999999999887 69999999999999996443332    3467788877665 59999


Q ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCC
Q 009385          489 AEETFLEAISADPT-NSYYAANYANFLWNTGGE  520 (536)
Q Consensus       489 Aee~feKALeLDPd-Npeal~NyA~~L~elGr~  520 (536)
                      |..+|.+.++.+.- .+.+.+..|.++...|+.
T Consensus       324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence            99999999997654 344567788888888876

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.24  E-value=0.02  Score=64.50  Aligned_cols=98  Identities=15%  Similarity=0.110  Sum_probs=84.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL-LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e-AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      |+...|.+++++|+...|.... .+.|||+++. .-+-.-+|-..+.++|.+.-..+-.++.+|..+...+ +.++|++.
T Consensus       621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~-~i~~a~~~  698 (886)
T KOG4507|consen  621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK-NISGALEA  698 (886)
T ss_pred             CCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh-hhHHHHHH
Confidence            7999999999999999998664 4778999877 4678889999999999999888888999998877664 89999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHH
Q 009385          493 FLEAISADPTNSYYAANYANF  513 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~  513 (536)
                      |++|+.++|+++.+...+-.+
T Consensus       699 ~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHhcCCCChhhHHHHHHH
Confidence            999999999999886555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.026  Score=60.22  Aligned_cols=105  Identities=13%  Similarity=0.044  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV-EPPD---AESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL-DPdd---aeAL~nLG~~L~e~~GD~eEA  489 (536)
                      |++.+|...+.+.|.-.|.|..++.---.+++ ..|+.+.-...++|.+-. +|+-   ..++..|+..|.+. |-|++|
T Consensus       117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~-g~y~dA  194 (491)
T KOG2610|consen  117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC-GIYDDA  194 (491)
T ss_pred             ccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh-ccchhH
Confidence            67778888888888888888877755444555 578888888888888876 5555   45566666666664 588888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      ++.-++|++++|.+..+.+..|+++-..|+.
T Consensus       195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~  225 (491)
T KOG2610|consen  195 EKQADRALQINRFDCWASHAKAHVLEMNGRH  225 (491)
T ss_pred             HHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence            8888888888888888888888888777764

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.20  E-value=0.086  Score=52.47  Aligned_cols=98  Identities=12%  Similarity=0.120  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-
Q 009385          414 ADYFRTELLYQTGLAQEPND-PLLLANYAQFLYIVAH--------DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR-  483 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn-~eAL~NLA~lL~e~~G--------D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~-  483 (536)
                      .|+.+|..+|++|.+..-.. ..+.+++|.++.  .|        +...|...|++|-...  ++.+..++|.++.... 
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G  202 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG  202 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC
Confidence            58999999999999985444 344777887655  34        4458999999998877  8899999998775532 


Q ss_pred             --CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          484 --NDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       484 --GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                        .|+++|..+|.+|.+...  ....++++ +++..|
T Consensus       203 v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         203 VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence              389999999999999877  77888888 666666

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.027  Score=59.79  Aligned_cols=88  Identities=19%  Similarity=0.219  Sum_probs=73.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND----PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn----~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      ++|..|+..|.++|+.+-.|    ..+|+|.|.+.+ ..|+|-.|+....+|+.++|.|..+++.-|.++++.. ++.+|
T Consensus        95 Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe-~~~~a  172 (390)
T KOG0551|consen   95 KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE-RFAEA  172 (390)
T ss_pred             hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH-HHHHH
Confidence            68999999999999996554    456888887766 6899999999999999999999999999999999875 77777


Q ss_pred             HHHHHHHHHhCCCC
Q 009385          490 EETFLEAISADPTN  503 (536)
Q Consensus       490 ee~feKALeLDPdN  503 (536)
                      ..+.+..+.++-+.
T Consensus       173 ~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  173 VNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHhhhhhhhHHH
Confidence            77777666655443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.18  E-value=0.0064  Score=64.12  Aligned_cols=92  Identities=13%  Similarity=0.222  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385          419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAIS  498 (536)
Q Consensus       419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALe  498 (536)
                      -.-.|.++-..-|+|+..|..|+.... ..+.+.+-...|-+++..+|.|++.|...+.+-+...++++.+...|.++++
T Consensus        92 ~~f~~~R~tnkff~D~k~w~~y~~Y~~-k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR  170 (435)
T COG5191          92 KIFELYRSTNKFFNDPKIWSQYAAYVI-KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLR  170 (435)
T ss_pred             eeEeeehhhhcCCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhc
Confidence            334566777789999999999985444 6789999999999999999999999988665555556799999999999999


Q ss_pred             hCCCCHHHHHHHH
Q 009385          499 ADPTNSYYAANYA  511 (536)
Q Consensus       499 LDPdNpeal~NyA  511 (536)
                      ++|++|.++..|-
T Consensus       171 ~N~~~p~iw~eyf  183 (435)
T COG5191         171 MNSRSPRIWIEYF  183 (435)
T ss_pred             cCCCCchHHHHHH
Confidence            9999998865543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=0.014  Score=65.33  Aligned_cols=103  Identities=18%  Similarity=0.118  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHH--HHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-AES--FSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-aeA--L~nLG~~L~e~~GD~eEAe  490 (536)
                      ++|++|.+...+.|...|++..++.---..+. ..+.|++|.    +.++.++-+ ...  .+.-++++|+. +..++|+
T Consensus        26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValI-q~~ky~~AL----k~ikk~~~~~~~~~~~fEKAYc~Yrl-nk~Deal   99 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALI-QLDKYEDAL----KLIKKNGALLVINSFFFEKAYCEYRL-NKLDEAL   99 (652)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhh-hhhHHHHHH----HHHHhcchhhhcchhhHHHHHHHHHc-ccHHHHH
Confidence            45555555555555555555554433222222 234444444    222222211 000  02334444443 3455555


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      ..++   -+|+.+...+.-.|.+++++|++++|+.
T Consensus       100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydeald  131 (652)
T KOG2376|consen  100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEALD  131 (652)
T ss_pred             HHHh---cccccchHHHHHHHHHHHHHhhHHHHHH
Confidence            5554   3344444444455555555555555543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.08  E-value=0.032  Score=58.90  Aligned_cols=111  Identities=19%  Similarity=0.130  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH----------------HH--------------H
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKR----------------AI--------------A  463 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeK----------------AL--------------e  463 (536)
                      .+|..|..+|++.-.+.|......+-+|+.+| ..+.+.+|......                ||              +
T Consensus        58 Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY-~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLve  136 (459)
T KOG4340|consen   58 QEFALAAECYEQLGQLHPELEQYRLYQAQSLY-KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVE  136 (459)
T ss_pred             HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH-HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHH
Confidence            68999999999999999998888888899888 47877777655322                22              2


Q ss_pred             hCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccCC
Q 009385          464 VEP--PDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPL  526 (536)
Q Consensus       464 LDP--ddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~clpl  526 (536)
                      .-|  ++++..++.|.++++ .|++++|.+-|+.|++..--+|-..+|+|.+.+..|+++.++.+
T Consensus       137 Qlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~  200 (459)
T KOG4340|consen  137 QLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKH  200 (459)
T ss_pred             hccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHH
Confidence            224  678889999988886 46999999999999999999999999999999999988766643

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.07  E-value=0.036  Score=64.54  Aligned_cols=118  Identities=14%  Similarity=0.060  Sum_probs=90.8

Q ss_pred             HHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385          395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK  474 (536)
Q Consensus       395 ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~n  474 (536)
                      ....|.+.||.-.+   |-++|.+|.+...+.++..|+-..+..--|..+. .+|+.++|..+++..-...++|-..+..
T Consensus         7 a~~err~rpi~d~l---d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~   82 (932)
T KOG2053|consen    7 AMSERRLRPIYDLL---DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQF   82 (932)
T ss_pred             ccHHHHHhHHHHHh---hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHH
Confidence            34455566664333   3479999999999999999998888888887777 6899999998888888888888888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       475 LG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      +-.+|.+. +++++|..+|++|+..+|+ -+.+..|=.++.+.+
T Consensus        83 l~~~y~d~-~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~  124 (932)
T KOG2053|consen   83 LQNVYRDL-GKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK  124 (932)
T ss_pred             HHHHHHHH-hhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence            88887775 5899999999999999998 554444444444433

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.071  Score=55.29  Aligned_cols=92  Identities=16%  Similarity=0.264  Sum_probs=77.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +.+.+|.-+|+..-+..|-.+.++++.|.+.. .++++++|+..++.||..++++++.+.|+-+.....+.+.+--.++.
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            46888999999988878888999998887665 68999999999999999999999999999876666666667777788


Q ss_pred             HHHHHhCCCCHHH
Q 009385          494 LEAISADPTNSYY  506 (536)
Q Consensus       494 eKALeLDPdNpea  506 (536)
                      .+.....|.++.+
T Consensus       266 ~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  266 SQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHhcCCcchHH
Confidence            8888888988865

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=0.037  Score=57.79  Aligned_cols=107  Identities=17%  Similarity=0.167  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA--SFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG--~~L~e~~GD~eEAee  491 (536)
                      +++.+|...|..++..+|++.++...|+..+. ..|+.+.|...+...=.-..++ .++..-+  .++-+.. +..+. .
T Consensus       148 e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa-~~~~~-~  223 (304)
T COG3118         148 EDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAA-ATPEI-Q  223 (304)
T ss_pred             cchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHh-cCCCH-H
Confidence            79999999999999999999999999999877 6899988888766532211111 1111111  1222211 22221 2


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      -+++.+..||+|.++.+.+|..|...|+.|.++
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al  256 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHLVGRNEAAL  256 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            356666778888888888888888888776554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.87  E-value=0.0029  Score=66.96  Aligned_cols=88  Identities=15%  Similarity=0.097  Sum_probs=77.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|+++.|++.|-+||.++|....+|.+.|.++. ..+....|++.+..|++++|+.+..|-.-|..... .|++++|..+
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~aa~d  204 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEAAHD  204 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHHHHH
Confidence            378999999999999999999999999999877 58999999999999999999999877666654443 4699999999


Q ss_pred             HHHHHHhCCC
Q 009385          493 FLEAISADPT  502 (536)
Q Consensus       493 feKALeLDPd  502 (536)
                      ++.|+++|=+
T Consensus       205 l~~a~kld~d  214 (377)
T KOG1308|consen  205 LALACKLDYD  214 (377)
T ss_pred             HHHHHhcccc
Confidence            9999998644

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.011  Score=60.31  Aligned_cols=81  Identities=21%  Similarity=0.309  Sum_probs=71.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       441 A~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      |.-++ ..+.|+.|+.+|-+||.++|..+..+.|-+..++.. ++++.+..-.++|++++|+.+..++.+|..+.....+
T Consensus        17 gnk~f-~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~-~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   17 GNKCF-IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL-KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             ccccc-chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh-hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            33344 457899999999999999999999999999888875 5999999999999999999999999999999988877


Q ss_pred             ccc
Q 009385          521 DTC  523 (536)
Q Consensus       521 E~c  523 (536)
                      +.+
T Consensus        95 ~ea   97 (284)
T KOG4642|consen   95 DEA   97 (284)
T ss_pred             cHH
Confidence            544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.83  E-value=0.1  Score=63.46  Aligned_cols=105  Identities=22%  Similarity=0.245  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP--DAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd--daeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      +.+++|.++|+..++.--+-...|..||.++. .+.+-++|...+.+||+.-|.  |.+.....|.+-+. .||.+.+..
T Consensus      1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRt 1621 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRT 1621 (1710)
T ss_pred             hcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHH
Confidence            68889999999999998888999999999888 567778999999999999998  88889999987776 479999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      +|+-.+...|.-.+.|.-|...-...|+.
T Consensus      1622 lfEgll~ayPKRtDlW~VYid~eik~~~~ 1650 (1710)
T KOG1070|consen 1622 LFEGLLSAYPKRTDLWSVYIDMEIKHGDI 1650 (1710)
T ss_pred             HHHHHHhhCccchhHHHHHHHHHHccCCH
Confidence            99999999999999888888877777653

>smart00028 TPR Tetratricopeptide repeats

Probab=95.63  E-value=0.02  Score=35.62  Aligned_cols=31  Identities=32%  Similarity=0.570  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP  467 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPd  467 (536)
                      ++.++|.++. ..+++++|+.+|+++++++|+
T Consensus         3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYL-KLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence            3444454444 345555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.52  E-value=0.054  Score=60.52  Aligned_cols=90  Identities=18%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      .....|+..|.+++...|+...+|-|+|.++.+  ..||.-.|+.....|+++||-...+|+.|+.+|.+.. ++.+|+.
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~-r~~eal~  466 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT-RYLEALS  466 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh-hHHHhhh
Confidence            467789999999999999999999999987763  2467789999999999999999999999999998874 8999999


Q ss_pred             HHHHHHHhCCCCH
Q 009385          492 TFLEAISADPTNS  504 (536)
Q Consensus       492 ~feKALeLDPdNp  504 (536)
                      +...+.-..|.+.
T Consensus       467 ~~~alq~~~Ptd~  479 (758)
T KOG1310|consen  467 CHWALQMSFPTDV  479 (758)
T ss_pred             hHHHHhhcCchhh
Confidence            9888888888554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.50  E-value=0.13  Score=55.33  Aligned_cols=107  Identities=23%  Similarity=0.217  Sum_probs=84.1

Q ss_pred             ccCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHh-
Q 009385          412 DYADYFRTELLYQTGLAQ----EPNDPLLLANYAQFLYIV---AHDYDRAEEYFKR-AIAVEPPDAESFSKYASFLWRV-  482 (536)
Q Consensus       412 d~gdyeeAee~YqKALeL----dPdn~eAL~NLA~lL~e~---~GD~deAEe~FeK-ALeLDPddaeAL~nLG~~L~e~-  482 (536)
                      |-.+|+.-+.+.+..=.+    -++.+.+.+.||.++. .   .||.++|+..+.. ....++.+++.+..+|.++-+. 
T Consensus       153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALn-Rrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~  231 (374)
T PF13281_consen  153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALN-RRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLF  231 (374)
T ss_pred             hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence            447888777777766665    5667788888998776 5   7999999999999 5556688999999999876432 


Q ss_pred             -------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          483 -------RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       483 -------~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                             ...+++|+.+|.+|.+++|+ ...--|++.+|.-.|..
T Consensus       232 ~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~  275 (374)
T PF13281_consen  232 LESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHD  275 (374)
T ss_pred             HHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCc
Confidence                   12478999999999999964 45567999999888863

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.30  E-value=0.03  Score=40.01  Aligned_cols=25  Identities=32%  Similarity=0.635  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 009385          437 LANYAQFLYIVAHDYDRAEEYFKRAI  462 (536)
Q Consensus       437 L~NLA~lL~e~~GD~deAEe~FeKAL  462 (536)
                      |.++|.++. ..|++++|+++|+++|
T Consensus         2 l~~Lg~~~~-~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYR-QQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence            556666555 4666666666666644

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.26  E-value=0.028  Score=60.51  Aligned_cols=114  Identities=17%  Similarity=0.149  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP----D------AESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd----d------aeAL~nLG~  477 (536)
                      +-|.++++.|++|++..-++.      .++..+|.++- ..+|+++|.-+..+|+++--.    |      ..+++.+++
T Consensus       136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaV  214 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAV  214 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHH
Confidence            578889999999998855443      34666787665 579999999999999886422    2      346677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCccccCCCCC
Q 009385          478 FLWRVRNDLWAAEETFLEAISAD------PTNSYYAANYANFLWNTGGEDTCFPLSSP  529 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeLD------PdNpeal~NyA~~L~elGr~E~clpl~~~  529 (536)
                      .|.. .|++-.|.++.++|.++.      |-.+....-+|.+|.+.|+.|.+|+.+|.
T Consensus       215 alR~-~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  215 ALRL-LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHH-hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence            6654 578999999999988763      12223356788999999999999988764

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.19  E-value=0.029  Score=61.20  Aligned_cols=109  Identities=10%  Similarity=0.045  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE----PPD--AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD----Pdd--aeAL~nLG~~L~e  481 (536)
                      |+|++|+.+-+.-|++.-..      ..++.|+|..+. ..|+++.|.++|++++.+.    -.-  +..-+.||..|..
T Consensus       209 Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl  287 (639)
T KOG1130|consen  209 GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL  287 (639)
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence            89999999888777764332      468999999877 6899999999999876553    222  3446678888876


Q ss_pred             hcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCcccc
Q 009385          482 VRNDLWAAEETFLEAISADPT------NSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPd------Npeal~NyA~~L~elGr~E~cl  524 (536)
                      .+ ++++|++|+++=+++.-.      ...+++.+|+.+..+|+.++++
T Consensus       288 l~-e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  288 LK-EVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence            54 899999999997765332      2345788999998888766544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.18  E-value=0.029  Score=61.17  Aligned_cols=106  Identities=14%  Similarity=0.164  Sum_probs=80.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Q 009385          413 YADYFRTELLYQTGLAQEPNDPL----LLANYAQFLYIVAHDYDRAEEYFKRAIAV------EPPDAESFSKYASFLWRV  482 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~e----AL~NLA~lL~e~~GD~deAEe~FeKALeL------DPddaeAL~nLG~~L~e~  482 (536)
                      .|++...+.+|++||+.--+|..    +|..||.+|+ ..+||++|.+|-..=|.+      .-..+.+-.|||..+-. 
T Consensus        30 ~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyf-yL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv-  107 (639)
T KOG1130|consen   30 MGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYF-YLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV-  107 (639)
T ss_pred             ccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhh-hHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh-
Confidence            38999999999999999888754    5667888887 689999999985543332      33445667789998754 


Q ss_pred             cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCC
Q 009385          483 RNDLWAAEETFLEAISADPT------NSYYAANYANFLWNTGGE  520 (536)
Q Consensus       483 ~GD~eEAee~feKALeLDPd------Npeal~NyA~~L~elGr~  520 (536)
                      +|.|++|+.+..+-+.+.-.      -..+++|+|++|...|+.
T Consensus       108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~  151 (639)
T KOG1130|consen  108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC  151 (639)
T ss_pred             hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc
Confidence            68999999999886665321      234689999999998864

>smart00028 TPR Tetratricopeptide repeats

Probab=95.17  E-value=0.037  Score=34.37  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385          470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTN  503 (536)
Q Consensus       470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN  503 (536)
                      .++.++|.++... +++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~-~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKL-GDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHH-hhHHHHHHHHHHHHccCCCC
Confidence            5678999888775 69999999999999999864

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.15  E-value=0.043  Score=36.94  Aligned_cols=31  Identities=42%  Similarity=0.581  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP  467 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPd  467 (536)
                      +++++|.++. ..|++++|.++|++.++..|+
T Consensus         2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcC
Confidence            4455555544 355555555555555555554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.10  E-value=0.37  Score=50.07  Aligned_cols=94  Identities=15%  Similarity=0.116  Sum_probs=70.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          421 LLYQTGLAQEPNDPLLLANYAQFLYIVAH-----------DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       421 e~YqKALeLdPdn~eAL~NLA~lL~e~~G-----------D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      .-|.+.++.+|+|..+|..|..+--....           -.+.-+.+|++||+.+|++...+..|=....+. -+.++.
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-~~~~~l   84 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-WDSEKL   84 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHH
Confidence            46788999999999999888865332111           146777889999999999998877776655554 378888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          490 EETFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      .+-+++++..+|+++..+..|-.+..
T Consensus        85 ~~~we~~l~~~~~~~~LW~~yL~~~q  110 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREYLDFRQ  110 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            88999999999999887666555443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.01  E-value=0.28  Score=42.38  Aligned_cols=49  Identities=20%  Similarity=0.188  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 009385          419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD  468 (536)
Q Consensus       419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd  468 (536)
                      .+..++++++.+|+|..+.+.+|..+. ..|++++|.+.+..+++.+|++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCccc
Confidence            456788999999999999999998877 6899999999999999999877

>PLN03077 Protein ECB2; Provisional

Probab=95.00  E-value=0.14  Score=59.06  Aligned_cols=102  Identities=15%  Similarity=0.035  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA--VEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe--LDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      |++++|...|...    +.|...|+.+...+. ..|+.++|++.|++.++  +.|+.......+ ..+.+ .|++++|..
T Consensus       538 G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~~-~g~v~ea~~  610 (857)
T PLN03077        538 GRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSR-SGMVTQGLE  610 (857)
T ss_pred             CCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHhh-cChHHHHHH
Confidence            6667777776664    446666666665555 46777777777777665  345544433333 23433 357777777


Q ss_pred             HHHHHHHh---CCCCHHHHHHHHHHHHHcCCCccc
Q 009385          492 TFLEAISA---DPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       492 ~feKALeL---DPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +|++..+.   .|+ ...+..+..+|.+.|+.+++
T Consensus       611 ~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA  644 (857)
T PLN03077        611 YFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEA  644 (857)
T ss_pred             HHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHH
Confidence            77777643   232 34556666777777765443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.93  E-value=0.17  Score=56.15  Aligned_cols=107  Identities=21%  Similarity=0.251  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND----PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn----~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      .|.+.+.+.|+.+|++-|.-    +.+|..||.+.. .+.++..|.+.+-.||..-|.+-.--... .+-... ++++..
T Consensus       380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~ARkiLG~AIG~cPK~KlFk~YI-elElqL-~efDRc  456 (677)
T KOG1915|consen  380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGARKILGNAIGKCPKDKLFKGYI-ELELQL-REFDRC  456 (677)
T ss_pred             hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHHHHHHHHhccCCchhHHHHHH-HHHHHH-hhHHHH
Confidence            68899999999999998874    567777888766 57888888888888888888875432222 222233 478888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ..+|++-|+-+|.|..++..||.+-..+|+.|.+
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa  490 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA  490 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence            8888888888888888888888888888876643

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.93  E-value=0.089  Score=53.07  Aligned_cols=82  Identities=20%  Similarity=0.224  Sum_probs=68.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDAE-----SFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       441 A~lL~e~~GD~deAEe~FeKALeLDPddae-----AL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      |.-++ ..|+|++|..-|..||++-|.-..     .|.|-|.++..+ +..+.|+.-..+||+++|.+-.++...|.+|-
T Consensus       102 GN~~F-~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl-~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  102 GNELF-KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL-RKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHhh-hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh-hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            44456 589999999999999999998753     456777777765 48999999999999999999999999999998


Q ss_pred             HcCCCcccc
Q 009385          516 NTGGEDTCF  524 (536)
Q Consensus       516 elGr~E~cl  524 (536)
                      ++.++|.++
T Consensus       180 k~ek~eeal  188 (271)
T KOG4234|consen  180 KMEKYEEAL  188 (271)
T ss_pred             hhhhHHHHH
Confidence            888776554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.87  E-value=0.34  Score=52.20  Aligned_cols=56  Identities=18%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             cCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHH---H-----hCCHHHHHHHHHHHHHhCCCC
Q 009385          413 YADYFRTELLYQT-GLAQEPNDPLLLANYAQFLYI---V-----AHDYDRAEEYFKRAIAVEPPD  468 (536)
Q Consensus       413 ~gdyeeAee~YqK-ALeLdPdn~eAL~NLA~lL~e---~-----~GD~deAEe~FeKALeLDPdd  468 (536)
                      .|+.++|+..+.. ....++.+++.+--+|+++-.   .     ...+++|+..|+++.+++|+.
T Consensus       195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            3666666666666 344455566666666665321   0     113566666666666666543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.87  E-value=0.17  Score=57.02  Aligned_cols=105  Identities=20%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--------------------------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP--------------------------  467 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd--------------------------  467 (536)
                      +..++|+..++   -+++.+..++.-.|+++| ..++|++|...|+..++-+-+                          
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~  168 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP  168 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence            55666666666   557777878888999999 689999999999988543322                          


Q ss_pred             -----CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCC-H-------HHHHHHHHHHHHcCCCccc
Q 009385          468 -----DAESFSKYASFLWRVRNDLWAAEETFLEAISA-------DPTN-S-------YYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       468 -----daeAL~nLG~~L~e~~GD~eEAee~feKALeL-------DPdN-p-------eal~NyA~~L~elGr~E~c  523 (536)
                           .-+.++|.|.++... |+|.+|++.+++|+++       +-.+ -       .+...++.+|..+|+.+++
T Consensus       169 ~v~e~syel~yN~Ac~~i~~-gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  169 EVPEDSYELLYNTACILIEN-GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             CCCcchHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence                 335667888777764 6999999999999432       1122 1       2577899999999986543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.84  E-value=0.39  Score=47.82  Aligned_cols=99  Identities=14%  Similarity=0.016  Sum_probs=74.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHh----cC-
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV---AHDYDRAEEYFKRAIAVEPPD-AESFSKYASFLWRV----RN-  484 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~---~GD~deAEe~FeKALeLDPdd-aeAL~nLG~~L~e~----~G-  484 (536)
                      .+..+|..+|+  ...+..++.+.++||.++..-   ..|+.+|..+|++|.+..-.. ..+...+|.++..-    .- 
T Consensus        91 ~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~  168 (292)
T COG0790          91 RDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA  168 (292)
T ss_pred             ccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence            57999999999  445677899999999887631   338999999999998775443 34588888766542    01 


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          485 -DLWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       485 -D~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                       +..+|..+|.+|....  ++.+..++|.+|.+
T Consensus       169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~  199 (292)
T COG0790         169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEK  199 (292)
T ss_pred             HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence             3458999999999886  77788889966643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.78  E-value=0.44  Score=48.96  Aligned_cols=92  Identities=21%  Similarity=0.257  Sum_probs=73.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhc---
Q 009385          413 YADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES---FSKYASFLWRVR---  483 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA---L~nLG~~L~e~~---  483 (536)
                      .|++++|+..|++.....|..+   .+...++.+++ ..+++++|+.+.++-+++.|+++++   ++..|...+..-   
T Consensus        47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~  125 (254)
T COG4105          47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDV  125 (254)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCcc
Confidence            4899999999999999999876   56777888888 6899999999999999999999764   444454433211   


Q ss_pred             -CC---HHHHHHHHHHHHHhCCCCHH
Q 009385          484 -ND---LWAAEETFLEAISADPTNSY  505 (536)
Q Consensus       484 -GD---~eEAee~feKALeLDPdNpe  505 (536)
                       +|   ..+|..-|+..|+--|+...
T Consensus       126 ~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105         126 TRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             ccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence             12   46788888999999999764

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.76  E-value=0.069  Score=57.52  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP-LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~-eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .||..|+.+++-++.++-..- .+-..+|..++ ..|||++|...|+-+..-+--+++...+||.+.+.. |.|.+|+..
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~f-hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL-g~Y~eA~~~  113 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYF-HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL-GQYIEAKSI  113 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHH-hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH-HHHHHHHHH
Confidence            477778888777776654433 23333565566 589999999999999998888889999999887765 589999887


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCCCC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTCFPLSSP  529 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~clpl~~~  529 (536)
                      -.+|    |++|-...-+=++-.++|+.++....+++
T Consensus       114 ~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~  146 (557)
T KOG3785|consen  114 AEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSS  146 (557)
T ss_pred             HhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            7665    77776544344444466776666555443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.73  E-value=0.13  Score=40.86  Aligned_cols=41  Identities=22%  Similarity=0.268  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA  476 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG  476 (536)
                      +.++.+|..++ ..|+|++|.++.+++|+++|+|..+.....
T Consensus         2 d~lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            34566666666 578888888888888888888877765544

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.72  E-value=0.72  Score=46.05  Aligned_cols=138  Identities=17%  Similarity=0.164  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 009385          369 EEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA  448 (536)
Q Consensus       369 e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~  448 (536)
                      -..+.-|+.+++.|+++|-  ......+-.|+-+.+          .-.+.++...+..+. -++|.+++    .++-..
T Consensus        58 l~~le~Y~kCielAa~Iq~--i~~~e~k~~R~~a~~----------~s~~~l~~L~~~tk~-S~dP~llY----y~Wsr~  120 (203)
T PF11207_consen   58 LEALEKYSKCIELAAQIQH--IKQKERKTDRFRALL----------HSYQELERLQEETKN-SQDPYLLY----YHWSRF  120 (203)
T ss_pred             HHHHHHHHHHHHHHhcCee--echHhHHHHHHHHHH----------HHHHHHHHHHHHHcc-CCCccHHH----HHhhcc
Confidence            4566778899999998774  233333333443333          233344444555553 33555442    234223


Q ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCccc
Q 009385          449 HDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPT----NSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       449 GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd----Npeal~NyA~~L~elGr~E~c  523 (536)
                      || +.|.+.|.++-.-. =++++..+.||.++..  .|.++|+.++.+++++.+.    ||+++..++.++..+|+.+.+
T Consensus       121 ~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~k--rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  121 GD-QEALRRFLQLEGTPELETAELQYALATYYTK--RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             Cc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            54 47887777664332 4678999999987753  5899999999999998644    589999999999999999887


Q ss_pred             cCC
Q 009385          524 FPL  526 (536)
Q Consensus       524 lpl  526 (536)
                      +..
T Consensus       198 Yiw  200 (203)
T PF11207_consen  198 YIW  200 (203)
T ss_pred             hhh
Confidence            753

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.68  E-value=0.41  Score=46.08  Aligned_cols=118  Identities=15%  Similarity=0.060  Sum_probs=85.4

Q ss_pred             HHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009385          394 HETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS  473 (536)
Q Consensus       394 ~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~  473 (536)
                      .+.+..++..+.+-+..   ++.++++..+...-.+.|+.+++-.--|.++. ..|++.+|+..|+.+.+-.|..+.+-.
T Consensus         7 ~~iv~gLie~~~~al~~---~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kA   82 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRL---GDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKA   82 (160)
T ss_pred             HHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHH
Confidence            34444455544333333   68999999999999999999999998887776 689999999999999999999998888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          474 KYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       474 nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      .++.+|+..+ |.+ =..+-+++++.++ ++....-...++...+
T Consensus        83 LlA~CL~~~~-D~~-Wr~~A~evle~~~-d~~a~~Lv~~Ll~~~~  124 (160)
T PF09613_consen   83 LLALCLYALG-DPS-WRRYADEVLESGA-DPDARALVRALLARAD  124 (160)
T ss_pred             HHHHHHHHcC-ChH-HHHHHHHHHhcCC-ChHHHHHHHHHHHhcc
Confidence            8898887654 332 2334555666544 5666555555554444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.66  E-value=0.44  Score=47.91  Aligned_cols=106  Identities=15%  Similarity=0.141  Sum_probs=81.9

Q ss_pred             CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----------------------
Q 009385          414 ADYFRTELLYQTGLAQEP----NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP----------------------  467 (536)
Q Consensus       414 gdyeeAee~YqKALeLdP----dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd----------------------  467 (536)
                      |.+..|..++.++...++    ..+.+.+.++.+++ ..|+..+|...++..+.....                      
T Consensus       160 g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (352)
T PF02259_consen  160 GNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVI  238 (352)
T ss_pred             CCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccc
Confidence            788889999988888652    25677888899999 689999999999988881111                      


Q ss_pred             ------------CHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          468 ------------DAESFSKYASFLWRV-----RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       468 ------------daeAL~nLG~~L~e~-----~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                                  -+.++..+|......     .++.+++..+|++|++++|++..+++.+|.++...-+.
T Consensus       239 ~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~  308 (352)
T PF02259_consen  239 SSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLES  308 (352)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHh
Confidence                        124566666655544     25889999999999999999999999999988765443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.45  E-value=0.18  Score=43.59  Aligned_cols=65  Identities=18%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 009385          454 AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN--SYYAANYANFLWNTGG  519 (536)
Q Consensus       454 AEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN--peal~NyA~~L~elGr  519 (536)
                      ....++++++.+|+|.++.+.+|..+.. .|++++|++.+.++++.+|++  ..+.-.+-.++-.+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4567899999999999999999998775 579999999999999999876  4455555555555554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.40  E-value=0.18  Score=52.73  Aligned_cols=89  Identities=18%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             CCHHHHHHHHHHHH----HhC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 009385          414 ADYFRTELLYQTGL----AQE--PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKAL----eLd--Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~e  487 (536)
                      ||.+.|..+|++.=    +++  -++...+.|.+.++. ..++|..|...|.+.++.||.++.+.++-|.++... |+..
T Consensus       226 GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l-g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl-g~l~  303 (366)
T KOG2796|consen  226 GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL-GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL-GKLK  303 (366)
T ss_pred             ccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee-cccchHHHHHHHhhccccCCCchhhhchHHHHHHHH-HHHH
Confidence            77777777777332    222  334456666665444 578888888888888888888888888888877765 5888


Q ss_pred             HHHHHHHHHHHhCCCCH
Q 009385          488 AAEETFLEAISADPTNS  504 (536)
Q Consensus       488 EAee~feKALeLDPdNp  504 (536)
                      .|++.++.++..+|...
T Consensus       304 DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  304 DALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHhccCCccc
Confidence            88888888888888754

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.36  E-value=0.15  Score=54.79  Aligned_cols=113  Identities=14%  Similarity=0.027  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHh-CCCCHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQ-EPNDPLL---LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeL-dPdn~eA---L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      |+...-...++|.+-. +|+-|-.   +=.|+.-+. ..|-|++|++..++|++++|.|..+....+.++- .+++++++
T Consensus       151 G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~-E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVle-m~~r~Keg  228 (491)
T KOG2610|consen  151 GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE-ECGIYDDAEKQADRALQINRFDCWASHAKAHVLE-MNGRHKEG  228 (491)
T ss_pred             cchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH-HhccchhHHHHHHhhccCCCcchHHHHHHHHHHH-hcchhhhH
Confidence            6777777888888888 7776432   223553344 5899999999999999999999999999999885 46799999


Q ss_pred             HHHHHHHHHhCCC-CHHH---HHHHHHHHHHcCCCccccCCCC
Q 009385          490 EETFLEAISADPT-NSYY---AANYANFLWNTGGEDTCFPLSS  528 (536)
Q Consensus       490 ee~feKALeLDPd-Npea---l~NyA~~L~elGr~E~clpl~~  528 (536)
                      .++..+-=..=-. .-.+   +...|.++.+.+++|.++-+.+
T Consensus       229 ~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  229 KEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9988764221111 1111   3446777888888887765543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=94.35  E-value=0.4  Score=58.66  Aligned_cols=109  Identities=16%  Similarity=0.201  Sum_probs=87.7

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      .||.-+.-.+.|++|-+..- -...|..|..+|. .-+.+++|.++|++-++.--+-..+|..||.+|..+ ++-++|..
T Consensus      1509 ~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~-k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~-ne~~aa~~ 1585 (1710)
T KOG1070|consen 1509 AYGTEESLKKVFERACQYCD-AYTVHLKLLGIYE-KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ-NEAEAARE 1585 (1710)
T ss_pred             hhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc-cHHHHHHH
Confidence            34555556667777776432 3455656666766 578899999999999998888899999999999875 47899999


Q ss_pred             HHHHHHHhCCC--CHHHHHHHHHHHHHcCCCccc
Q 009385          492 TFLEAISADPT--NSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       492 ~feKALeLDPd--Npeal~NyA~~L~elGr~E~c  523 (536)
                      .+.+|++--|.  +.+.....|.+.+..|+.|..
T Consensus      1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence            99999999998  777888999999999998874

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.34  E-value=0.33  Score=54.04  Aligned_cols=99  Identities=20%  Similarity=0.240  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK--YASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~n--LG~~L~e~~GD~eEAee  491 (536)
                      +++++-..+|++-|+-.|.|-.+|..||.+-. ..||.|+|...|+-|+....-+..-+..  |-.|-.. .|.+++|..
T Consensus       451 ~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~-~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~-~~E~ekaR~  528 (677)
T KOG1915|consen  451 REFDRCRKLYEKFLEFSPENCYAWSKYAELET-SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIE-EGEFEKARA  528 (677)
T ss_pred             hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhh-cchHHHHHH
Confidence            68888888888888888888888888887655 5788888888888888766555433333  3333333 257888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          492 TFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      +|++.|+..+... .+..+|.+-.
T Consensus       529 LYerlL~rt~h~k-vWisFA~fe~  551 (677)
T KOG1915|consen  529 LYERLLDRTQHVK-VWISFAKFEA  551 (677)
T ss_pred             HHHHHHHhcccch-HHHhHHHHhc
Confidence            8888888877665 6667776655

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.29  E-value=0.27  Score=50.48  Aligned_cols=71  Identities=17%  Similarity=0.090  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY  506 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea  506 (536)
                      +.-|++-|+... ..|++++|.++|+++...+|..+   .++..++..++. .+++++|+.++++-+++.|.++.+
T Consensus        34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCCh
Confidence            456666676655 58999999999999999998886   577888888887 469999999999999999999865

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.20  E-value=0.099  Score=35.12  Aligned_cols=33  Identities=21%  Similarity=0.281  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385          470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTN  503 (536)
Q Consensus       470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN  503 (536)
                      ++++++|.++.. .|++++|+.+|++.++..|++
T Consensus         1 ~a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYK-LGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcCC
Confidence            578999998887 479999999999999999975

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.10  E-value=0.64  Score=48.39  Aligned_cols=108  Identities=16%  Similarity=0.181  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR--NDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~--GD~eEAee  491 (536)
                      .-.+..+..|++||+.+|++..++..|=.... ...+-++..+-+++++..+|++...|..|=.+....-  -.+.+...
T Consensus        45 a~~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~  123 (321)
T PF08424_consen   45 ALAERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRD  123 (321)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence            35667788999999999999999988776665 5678999999999999999999999988865443211  24677777


Q ss_pred             HHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCCcc
Q 009385          492 TFLEAISADPT------------------NSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       492 ~feKALeLDPd------------------Npeal~NyA~~L~elGr~E~  522 (536)
                      .|.++++.-..                  -..+...++.++.+.|-.|.
T Consensus       124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~  172 (321)
T PF08424_consen  124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER  172 (321)
T ss_pred             HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence            77777764111                  11346789999999997653

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.91  E-value=0.54  Score=53.19  Aligned_cols=100  Identities=17%  Similarity=0.096  Sum_probs=81.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHHHHhcCCH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKY------ASFLWRVRNDL  486 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nL------G~~L~e~~GD~  486 (536)
                      .++...+......++..||++..+..|||..+....+.+..+....+.++...|+|...+..+      +.++... ++.
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~  158 (620)
T COG3914          80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLL-GRT  158 (620)
T ss_pred             cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHh-ccH
Confidence            367888999999999999999999999998877544455566666667999999999988877      7655543 689


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          487 WAAEETFLEAISADPTNSYYAANYANF  513 (536)
Q Consensus       487 eEAee~feKALeLDPdNpeal~NyA~~  513 (536)
                      .++..+.++++.+.|.++.....+...
T Consensus       159 ~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         159 AEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            999999999999999998765554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.90  E-value=1.4  Score=42.52  Aligned_cols=73  Identities=22%  Similarity=0.066  Sum_probs=66.4

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      ..++.++++..+...--+.|+.++....-|.++.. +|++.+|+.+|+.+.+-.|..+.+..-++.+|..+|+.
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            46899999999999999999999999999987776 57999999999999999999999999999999999874

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.87  E-value=0.069  Score=54.61  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=42.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE  470 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae  470 (536)
                      .+|.+.|.++|.+|+++.|+...-|+.+|.. .++.|+++.|.+.|++.|++||+|..
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~-~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEY-TEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchh-hhhcccHHHHHHHHHHHHcCCccccc
Confidence            3677777778888888888877777777743 34677788888888888888777643

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.85  E-value=1.5  Score=43.68  Aligned_cols=100  Identities=17%  Similarity=0.112  Sum_probs=68.1

Q ss_pred             CCHHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHhCCC--C----HHHHH
Q 009385          414 ADYFRTELLYQTGLAQ----EPND---PLLLANYAQFLYIVAHD-------YDRAEEYFKRAIAVEPP--D----AESFS  473 (536)
Q Consensus       414 gdyeeAee~YqKALeL----dPdn---~eAL~NLA~lL~e~~GD-------~deAEe~FeKALeLDPd--d----aeAL~  473 (536)
                      -.+++|++.|.-||-.    ..++   +.++..+|.++. ..++       +.+|.+.|++|++....  .    ...++
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR-~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYR-DLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            4788888888877764    2222   345666775554 5677       44567777777765533  2    45677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Q 009385          474 KYASFLWRVRNDLWAAEETFLEAISADPTNS--YYAANYANFLWN  516 (536)
Q Consensus       474 nLG~~L~e~~GD~eEAee~feKALeLDPdNp--eal~NyA~~L~e  516 (536)
                      .+|.+..+. |++++|+.+|.+.+.. |+..  ..+.+.|.=+|+
T Consensus       170 LigeL~rrl-g~~~eA~~~fs~vi~~-~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  170 LIGELNRRL-GNYDEAKRWFSRVIGS-KKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHHHHHh-CCHHHHHHHHHHHHcC-CCCCCcHHHHHHHHHHHH
Confidence            788876664 7999999999999985 4333  367777776665

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=93.83  E-value=0.69  Score=46.47  Aligned_cols=104  Identities=19%  Similarity=0.136  Sum_probs=82.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA-VEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe-LDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |.+++..-..+.++..|.... .+.||..+. ..|++.+|+..|++++. +-.+|+..+..++..+... +++.+|...+
T Consensus        71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~-elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~-~~~A~a~~tL  147 (251)
T COG4700          71 DPERHLREATEELAIAPTVQN-RYRLANALA-ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI-QEFAAAQQTL  147 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHHH-HHHHHHHHH-HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh-ccHHHHHHHH
Confidence            344455555667777776443 334677777 58999999999999986 5578889999999988886 5999999999


Q ss_pred             HHHHHhCCC--CHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPT--NSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPd--Npeal~NyA~~L~elGr~E  521 (536)
                      ++..+.+|.  .|....-||..|.-.|+++
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a  177 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYA  177 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCch
Confidence            999999885  4666788999999999865

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.81  E-value=0.59  Score=48.75  Aligned_cols=104  Identities=16%  Similarity=0.092  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .+++-|++..++...++-+  ..+..||..+..   ..+.+.+|.-+|+..=+.-|..+..++..+.+...+ ++++||+
T Consensus       151 ~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~-~~~eeAe  227 (299)
T KOG3081|consen  151 HRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL-GRYEEAE  227 (299)
T ss_pred             HHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh-cCHHHHH
Confidence            5777788888888877654  344445554321   234688999999999988888999999999887765 6999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      ...+.|+.-++++|+.+.|+-..-...|..
T Consensus       228 ~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  228 SLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999988888865

>PRK10941 hypothetical protein; Provisional

Probab=93.67  E-value=0.42  Score=49.24  Aligned_cols=57  Identities=14%  Similarity=0.015  Sum_probs=31.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES  471 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA  471 (536)
                      +++++|..+.++.+.++|+++.-+...|.+++ ..|.+..|...|+.-|+..|+++.+
T Consensus       195 ~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        195 KQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhH
Confidence            45555555555555555555555555554444 3555555555555555555555554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.62  E-value=0.22  Score=48.77  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR  481 (536)
Q Consensus       419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e  481 (536)
                      |+.+|.+|+.+.|++...|+.+|.+.. ..|+.=.|.=+|-|++-..-.++.|..||..++..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            788999999999999999999997766 68999999999999998887778999999887655

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.61  E-value=0.11  Score=37.00  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 009385          471 SFSKYASFLWRVRNDLWAAEETFLEAISAD  500 (536)
Q Consensus       471 AL~nLG~~L~e~~GD~eEAee~feKALeLD  500 (536)
                      ++.+||.++.. .|++++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~-~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQ-QGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHH-CT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence            57899998876 579999999999966543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.49  E-value=0.47  Score=52.99  Aligned_cols=92  Identities=20%  Similarity=0.094  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CCHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA--HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR---NDLWAA  489 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~--GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~---GD~eEA  489 (536)
                      |+..|..+|.+|-++..  +.+.+.+|.++..-.  +|+.+|.++|.+|.  .-.+..+.+++|.++..-.   .+.+.|
T Consensus       308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa--~~G~~~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAA--KAGHILAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHH--HcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence            56666666666666544  334444555444212  34566777776664  3456666667766544311   256677


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Q 009385          490 EETFLEAISADPTNSYYAANYAN  512 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~  512 (536)
                      ..+|++|.+..  ++.+...++.
T Consensus       384 ~~~~k~aA~~g--~~~A~~~~~~  404 (552)
T KOG1550|consen  384 FAYYKKAAEKG--NPSAAYLLGA  404 (552)
T ss_pred             HHHHHHHHHcc--ChhhHHHHHH
Confidence            77777777665  3444444443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=93.33  E-value=0.25  Score=48.42  Aligned_cols=62  Identities=16%  Similarity=0.280  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          454 AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       454 AEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      |+.||.+|+.+.|++...|+.+|.+... .|+.-.|+-+|-|++...--.+.+..|+..++-.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7899999999999999999999987765 5799999999999998765558889999998877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=93.26  E-value=0.35  Score=43.37  Aligned_cols=50  Identities=22%  Similarity=0.147  Sum_probs=43.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA  463 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe  463 (536)
                      .|++++|+.++++++..+|.|-.++..+-.++. ..|+..+|.+.|++..+
T Consensus        75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~-~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALA-AQGRRAEALRVYERYRR  124 (146)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHH
Confidence            389999999999999999999999999988888 69999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.14  E-value=0.36  Score=38.28  Aligned_cols=39  Identities=10%  Similarity=0.060  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385          470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN  509 (536)
Q Consensus       470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~N  509 (536)
                      +-++.+|..++.. |+|++|..+.+++++++|+|.++..-
T Consensus         2 d~lY~lAig~ykl-~~Y~~A~~~~~~lL~~eP~N~Qa~~L   40 (53)
T PF14853_consen    2 DCLYYLAIGHYKL-GEYEKARRYCDALLEIEPDNRQAQSL   40 (53)
T ss_dssp             HHHHHHHHHHHHT-T-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred             hhHHHHHHHHHHh-hhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3467778778875 69999999999999999999987543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.04  E-value=0.15  Score=52.21  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=60.3

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          442 QFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       442 ~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ..+. ..+|.+.|.+.|.+|+++.|++...|+.+|. +-+..|+++.|.+.|++.+++||.+-..   -++-|.-+|+.+
T Consensus         3 ~~~~-~~~D~~aaaely~qal~lap~w~~gwfR~g~-~~ekag~~daAa~a~~~~L~ldp~D~~g---aa~kLa~lg~~e   77 (287)
T COG4976           3 YMLA-ESGDAEAAAELYNQALELAPEWAAGWFRLGE-YTEKAGEFDAAAAAYEEVLELDPEDHGG---AALKLAVLGRGE   77 (287)
T ss_pred             chhc-ccCChHHHHHHHHHHhhcCchhhhhhhhcch-hhhhcccHHHHHHHHHHHHcCCcccccc---hhhhHHhhcCCC
Confidence            3344 4799999999999999999999999999997 4455689999999999999999987543   334444556554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.03  E-value=0.21  Score=53.98  Aligned_cols=104  Identities=15%  Similarity=0.098  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------------hCCCCH------------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA------------VEPPDA------------  469 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe------------LDPdda------------  469 (536)
                      |+|++|...|.-+...+--+.+++.|+|-..+ ..|.|.+|+..-.+|-+            ..-+|-            
T Consensus        71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD  149 (557)
T KOG3785|consen   71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD  149 (557)
T ss_pred             ccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh
Confidence            89999999999888887778889999987665 68888888877555421            011111            


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          470 --ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       470 --eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                        +-...||.+.+... .|.+|++.|.+.+.-+|+.-..-.++|.+++.+.=
T Consensus       150 ~~EdqLSLAsvhYmR~-HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  150 TLEDQLSLASVHYMRM-HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             hHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence              11122334444433 68999999999999888877666778888877663

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.98  E-value=0.22  Score=34.83  Aligned_cols=29  Identities=24%  Similarity=0.316  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAV  464 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeL  464 (536)
                      .++.|+|.++. ..|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~-~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYR-AQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHH-HCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hhhhcchhhHHHHHHHHH
Confidence            34555665555 456666666666666553

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.87  E-value=0.85  Score=43.41  Aligned_cols=93  Identities=13%  Similarity=0.047  Sum_probs=66.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--VAHDYDRAEEYFKRAIA-VEPPD-AESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--~~GD~deAEe~FeKALe-LDPdd-aeAL~nLG~~L~e~~GD~eEA  489 (536)
                      .++-...+.+++.-...--.....+|||..+-.  ...|..+.+.+|+..++ -+|.. -+-++.|+.-+++.+ +|++|
T Consensus        12 ~d~~~~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk-eY~~s   90 (149)
T KOG3364|consen   12 EDLIAGQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK-EYSKS   90 (149)
T ss_pred             hhhhHHHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh-hHHHH
Confidence            444445554544444432246778888877652  23567889999999997 55554 356677777788764 89999


Q ss_pred             HHHHHHHHHhCCCCHHHH
Q 009385          490 EETFLEAISADPTNSYYA  507 (536)
Q Consensus       490 ee~feKALeLDPdNpeal  507 (536)
                      +.|.+..++.+|+|.++.
T Consensus        91 ~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   91 LRYVDALLETEPNNRQAL  108 (149)
T ss_pred             HHHHHHHHhhCCCcHHHH
Confidence            999999999999999874

>PRK10941 hypothetical protein; Provisional

Probab=92.74  E-value=0.35  Score=49.77  Aligned_cols=69  Identities=12%  Similarity=0.073  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY  506 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea  506 (536)
                      .+.|+=.++. ..+++++|..+.++.+.++|+++.-+...|.++.+. |.+..|..-++.-++..|++|.+
T Consensus       183 ml~nLK~~~~-~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL-~c~~~A~~DL~~fl~~~P~dp~a  251 (269)
T PRK10941        183 LLDTLKAALM-EEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL-DCEHVALSDLSYFVEQCPEDPIS  251 (269)
T ss_pred             HHHHHHHHHH-HcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhCCCchhH
Confidence            3445555555 689999999999999999999999999999888765 69999999999999999999976

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=92.68  E-value=0.047  Score=60.03  Aligned_cols=78  Identities=22%  Similarity=0.177  Sum_probs=61.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          440 YAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       440 LA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      -|.-.. ..++++.|+..|-|||+++|+++..+.+-+..+.. .+++..|+.-+.+|++++|....+++.-|.+...+++
T Consensus        10 ean~~l-~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen   10 EANEAL-KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             HHhhhc-ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            344334 46899999999999999999999999888855554 4699999999999999999988766555555544443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=92.67  E-value=0.25  Score=52.79  Aligned_cols=83  Identities=13%  Similarity=0.110  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385          439 NYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE----SFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       439 NLA~lL~e~~GD~deAEe~FeKALeLDPddae----AL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L  514 (536)
                      .=|+-++ ..++|..|+.+|-++|...-.|++    .|.|.|.+.+.. |+|..|+.-..+|+.++|.+..+++.=|.++
T Consensus        86 eeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l-~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   86 EEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL-GNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            3577778 589999999999999998876654    466777766665 5899999999999999999999999999999


Q ss_pred             HHcCCCccc
Q 009385          515 WNTGGEDTC  523 (536)
Q Consensus       515 ~elGr~E~c  523 (536)
                      +++.+...|
T Consensus       164 ~eLe~~~~a  172 (390)
T KOG0551|consen  164 LELERFAEA  172 (390)
T ss_pred             HHHHHHHHH
Confidence            998885444

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.58  E-value=0.19  Score=55.96  Aligned_cols=102  Identities=14%  Similarity=0.120  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHH-HHHHhCCC---C-----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------hCC---------
Q 009385          414 ADYFRTELLYQ-TGLAQEPN---D-----PLLLANYAQFLYIVAHDYDRAEEYFKRAIA---------VEP---------  466 (536)
Q Consensus       414 gdyeeAee~Yq-KALeLdPd---n-----~eAL~NLA~lL~e~~GD~deAEe~FeKALe---------LDP---------  466 (536)
                      |+|.+|.+.+. --+...|.   -     --+|+|+|-+.| ..+.|..+..+|++||+         +.|         
T Consensus       254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n  332 (696)
T KOG2471|consen  254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN  332 (696)
T ss_pred             cchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence            77777777553 33444454   1     234678998888 58999999999999996         112         


Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          467 PDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       467 ddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~el  517 (536)
                      ..-++++|+|..+.+. |++.+|-++|.+|+..--.||..|..+|.+.+..
T Consensus       333 ks~eilYNcG~~~Lh~-grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLHS-GRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             cchhhHHhhhHHHHhc-CCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            2347899999887765 6999999999999999999999999999887653

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.49  E-value=1  Score=50.31  Aligned_cols=88  Identities=16%  Similarity=0.092  Sum_probs=58.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .|+.+|.++|..|...  .+..+.+++|.++..   ...+...|..+|++|.+.+  ++.+...++.++....+++..+.
T Consensus       342 ~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~  417 (552)
T KOG1550|consen  342 RDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTAL  417 (552)
T ss_pred             ccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHH
Confidence            4567888888887763  567788888866552   1237888888888888777  66666667665554335677777


Q ss_pred             HHHHHHHHhCCCCHH
Q 009385          491 ETFLEAISADPTNSY  505 (536)
Q Consensus       491 e~feKALeLDPdNpe  505 (536)
                      ..+....++.-..++
T Consensus       418 ~~~~~~a~~g~~~~q  432 (552)
T KOG1550|consen  418 ALYLYLAELGYEVAQ  432 (552)
T ss_pred             HHHHHHHHhhhhHHh
Confidence            666666666444433

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=0.64  Score=52.61  Aligned_cols=105  Identities=17%  Similarity=0.066  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANY--AQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NL--A~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .-..++.+|...+.++|.++.++..+  .. +....++.+.|.-.++.++..+|+++.++.+||..+...++....+..+
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLSI-LLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHHh-hccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            44447778888888999999986443  32 3335788889999999999999999999999999887655556666666


Q ss_pred             HHHHHHhCCCCHHHHHHH------HHHHHHcCCC
Q 009385          493 FLEAISADPTNSYYAANY------ANFLWNTGGE  520 (536)
Q Consensus       493 feKALeLDPdNpeal~Ny------A~~L~elGr~  520 (536)
                      -+-|..+.|+|.++....      +.++-.+|+.
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRT  158 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccH
Confidence            666999999999986666      6666555543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.63  E-value=0.47  Score=50.46  Aligned_cols=112  Identities=15%  Similarity=0.093  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      .+|.+|+++..--.+.+|.+...+..+|..|| ...++..|..||++.-.+.|........++.-+++. +.+..|....
T Consensus        24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A-~i~ADALrV~  101 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA-CIYADALRVA  101 (459)
T ss_pred             hhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-cccHHHHHHH
Confidence            78999999999999999999999999998888 589999999999999999999998888888888875 5788887766


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCFPLS  527 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~clpl~  527 (536)
                      ......+.-..+.+.--+-+.+..|+.-.|..|-
T Consensus       102 ~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLv  135 (459)
T KOG4340|consen  102 FLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLV  135 (459)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhcccccCcchHHHH
Confidence            5543221111122233445556667766665443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.58  E-value=0.38  Score=33.64  Aligned_cols=30  Identities=20%  Similarity=0.111  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385          469 AESFSKYASFLWRVRNDLWAAEETFLEAISA  499 (536)
Q Consensus       469 aeAL~nLG~~L~e~~GD~eEAee~feKALeL  499 (536)
                      +.+++++|.++... |++++|+.++++++++
T Consensus         2 a~~~~~la~~~~~~-g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQ-GRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-hhcchhhHHHHHHHHH
Confidence            35789999988875 7999999999999986

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.53  E-value=1.7  Score=47.78  Aligned_cols=124  Identities=18%  Similarity=0.017  Sum_probs=89.8

Q ss_pred             ccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------H--HhCCHHHHHHHHHH
Q 009385          392 LDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLY---------I--VAHDYDRAEEYFKR  460 (536)
Q Consensus       392 lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~---------e--~~GD~deAEe~FeK  460 (536)
                      +-|-.+.++++-+.      ..||.+.+++.+.++.+ .++-...+..+..+.|         .  ...+.+.|++.+++
T Consensus       186 lLPp~~~kll~~vG------F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~  258 (468)
T PF10300_consen  186 LLPPKVLKLLSFVG------FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEE  258 (468)
T ss_pred             hCCHHHHHHHhhcC------cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHH
Confidence            34556667888774      22899999999999988 4443333333222211         0  13468899999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCCccc
Q 009385          461 AIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY----YAANYANFLWNTGGEDTC  523 (536)
Q Consensus       461 ALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe----al~NyA~~L~elGr~E~c  523 (536)
                      .++..|+.+-.+..-|.++.. +|+.++|+++|++|+.....-++    .++.+++++.-+++.+++
T Consensus       259 ~~~~yP~s~lfl~~~gR~~~~-~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  259 MLKRYPNSALFLFFEGRLERL-KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             HHHhCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            999999999999999998765 57999999999999965444444    366788888877776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=91.43  E-value=0.91  Score=41.41  Aligned_cols=85  Identities=21%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAH----------DYDRAEEYFKRAIAVEPPDAESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~G----------D~deAEe~FeKALeLDPddaeAL~nLG~~L~  480 (536)
                      ||+.+|++..+..+...+++.   .++..-|.+++....          -+-.|+++|.+++.+.|+.+..++.+|.=+-
T Consensus        10 GnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~   89 (111)
T PF04781_consen   10 GNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLG   89 (111)
T ss_pred             cCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhh
Confidence            889999999999999988877   444445555442111          1345788888888888888888888876433


Q ss_pred             HhcCCHHHHHHHHHHHHHh
Q 009385          481 RVRNDLWAAEETFLEAISA  499 (536)
Q Consensus       481 e~~GD~eEAee~feKALeL  499 (536)
                      -. ..|+++..-.+++|.+
T Consensus        90 s~-~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   90 SV-KYYKKAVKKAKRGLSV  107 (111)
T ss_pred             hH-HHHHHHHHHHHHHhcc
Confidence            22 2577777777777764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=90.79  E-value=1.8  Score=49.89  Aligned_cols=106  Identities=20%  Similarity=0.302  Sum_probs=80.4

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH-HHHh-cCCHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPDAESFSKYASF-LWRV-RNDLW  487 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--PddaeAL~nLG~~-L~e~-~GD~e  487 (536)
                      -+|-++.....|.+.|.+.---|....|||.+|. ...-+++|.+.|+|.+.+-  |+--+.|+.|=.. ..+. +..++
T Consensus       489 s~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE  567 (835)
T KOG2047|consen  489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE  567 (835)
T ss_pred             HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence            3477888899999999999999999999999887 4778999999999999985  5556777766442 2222 24799


Q ss_pred             HHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcC
Q 009385          488 AAEETFLEAISADPT-NSY-YAANYANFLWNTG  518 (536)
Q Consensus       488 EAee~feKALeLDPd-Npe-al~NyA~~L~elG  518 (536)
                      .|..+|++|++.-|. ++. ++..||.+--+-|
T Consensus       568 raRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G  600 (835)
T KOG2047|consen  568 RARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG  600 (835)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999998882 111 2445665544444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.75  E-value=3.1  Score=45.80  Aligned_cols=109  Identities=19%  Similarity=0.083  Sum_probs=75.3

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCCHH---HHHHHHHHHHHhcC
Q 009385          411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV---EPPDAE---SFSKYASFLWRVRN  484 (536)
Q Consensus       411 Dd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL---DPddae---AL~nLG~~L~e~~G  484 (536)
                      ...|+++.|..|.++|....|.-+-++...-...+ ..||++.|++..+.....   .|+-++   +...-+.......-
T Consensus       165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda  243 (531)
T COG3898         165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA  243 (531)
T ss_pred             HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence            35588888999999999999987766643322334 478999998888755543   344332   11112222223335


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          485 DLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       485 D~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      |...|.+.-.+++++.|+......--+..|++.|+.
T Consensus       244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~  279 (531)
T COG3898         244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNL  279 (531)
T ss_pred             ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccch
Confidence            788899999999999999988888888888888864

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=90.74  E-value=2.2  Score=47.89  Aligned_cols=93  Identities=17%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCC-----
Q 009385          414 ADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV-EPPDAESFSKYASFLWRVRND-----  485 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeL-DPddaeAL~nLG~~L~e~~GD-----  485 (536)
                      |+.++|++.|+..++.+|.  +-.++.|+-..|. ..+.|+++...+.|==++ -|..+...+.-+.+..+.-+|     
T Consensus       273 Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e  351 (539)
T PF04184_consen  273 GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE  351 (539)
T ss_pred             CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch
Confidence            7888888888888887775  4456777777666 478888888887773222 144555555554433332222     


Q ss_pred             ----------HHHHHHHHHHHHHhCCCCHHHH
Q 009385          486 ----------LWAAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       486 ----------~eEAee~feKALeLDPdNpeal  507 (536)
                                -..|.+.+.||++.+|..|.++
T Consensus       352 ~a~rRGls~ae~~aveAi~RAvefNPHVp~YL  383 (539)
T PF04184_consen  352 AASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL  383 (539)
T ss_pred             hhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence                      1245677888888888877653

The molecular function of this protein is uncertain.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.40  E-value=2.3  Score=44.00  Aligned_cols=95  Identities=11%  Similarity=0.052  Sum_probs=67.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HH-----HHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLL------LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ES-----FSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eA------L~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eA-----L~nLG~~L~e  481 (536)
                      .+..+|..++++||++.-+-...      +..+|.+|.....|+++|+.+|++|-+.--.+- .+     +...+.+-..
T Consensus        87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            57889999999999986553332      335777666555899999999999998765542 22     2333333333


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385          482 VRNDLWAAEETFLEAISADPTNSYYAAN  509 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdNpeal~N  509 (536)
                       .++|.+|+..|++..+..-+|+...+.
T Consensus       167 -leqY~~Ai~iyeqva~~s~~n~LLKys  193 (288)
T KOG1586|consen  167 -LEQYSKAIDIYEQVARSSLDNNLLKYS  193 (288)
T ss_pred             -HHHHHHHHHHHHHHHHHhccchHHHhH
Confidence             358999999999999988888765433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.24  E-value=2.9  Score=40.24  Aligned_cols=68  Identities=16%  Similarity=0.092  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~  482 (536)
                      .+.++++..+...-.+.|+.+++-.--|.++. ..|++++|...|+...+-.|..+.+-..++.+|+-.
T Consensus        24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i-~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLI-ARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             CCHHHHHHHHHHHHHhCCCccccchhHHHHHH-HcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            57777777777777777777777766665555 577777777777777777777776666777666653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.13  E-value=2.3  Score=44.59  Aligned_cols=107  Identities=13%  Similarity=0.057  Sum_probs=84.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH-HHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLW-AAEETF  493 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~e-EAee~f  493 (536)
                      .-.+|.++-..+|.++|.|..+|.-.-.++.....|+.+-.+++.+.++-+|.|-.+|..--.++- ..|++. .=++..
T Consensus        58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive-~l~d~s~rELef~  136 (318)
T KOG0530|consen   58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVE-LLGDPSFRELEFT  136 (318)
T ss_pred             cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHH-HhcCcccchHHHH
Confidence            556788888889999999988887766676666678888889999999999999888887765554 445777 677888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      ++++..|..|..++...-+++...++.+.
T Consensus       137 ~~~l~~DaKNYHaWshRqW~~r~F~~~~~  165 (318)
T KOG0530|consen  137 KLMLDDDAKNYHAWSHRQWVLRFFKDYED  165 (318)
T ss_pred             HHHHhccccchhhhHHHHHHHHHHhhHHH
Confidence            88899888888888887888777776543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.06  E-value=1.8  Score=43.31  Aligned_cols=89  Identities=17%  Similarity=0.129  Sum_probs=66.0

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFLWRVRNDL  486 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L~e~~GD~  486 (536)
                      +.+++++|+..++.++.. |.|.    .+-..+|.++. ..|.+|+|.+.+.....  +... ......|.+|.. .||-
T Consensus       101 e~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~-kg~k  175 (207)
T COG2976         101 EANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQL-QQKKADAALKTLDTIKE--ESWAAIVAELRGDILLA-KGDK  175 (207)
T ss_pred             hhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHH-cCch
Confidence            458999999999999974 3332    33446888887 58999999988876542  2222 234456888876 5799


Q ss_pred             HHHHHHHHHHHHhCCCCHH
Q 009385          487 WAAEETFLEAISADPTNSY  505 (536)
Q Consensus       487 eEAee~feKALeLDPdNpe  505 (536)
                      ++|+..|++|++.+++++.
T Consensus       176 ~~Ar~ay~kAl~~~~s~~~  194 (207)
T COG2976         176 QEARAAYEKALESDASPAA  194 (207)
T ss_pred             HHHHHHHHHHHHccCChHH
Confidence            9999999999999866553

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=89.97  E-value=0.73  Score=50.03  Aligned_cols=107  Identities=13%  Similarity=0.044  Sum_probs=80.2

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDP-----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE------SFSKYASFLW  480 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~-----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae------AL~nLG~~L~  480 (536)
                      .+.+|.+++.+-..-+.+-..++     ..+..+|.+.. -.+-++++.++|++|+++.-++.+      ++..||.++.
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~  173 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA  173 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence            44688888888888887754444     34444665544 467899999999999999876654      4567888777


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCC
Q 009385          481 RVRNDLWAAEETFLEAISADPTNS----------YYAANYANFLWNTGGE  520 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDPdNp----------eal~NyA~~L~elGr~  520 (536)
                      ..+ |+++|..+..+|.++-....          .+++.++..|..+|+.
T Consensus       174 ~l~-D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~L  222 (518)
T KOG1941|consen  174 QLK-DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRL  222 (518)
T ss_pred             HHH-hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccc
Confidence            764 99999999999999854322          3477889999888865

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=89.93  E-value=2.6  Score=49.84  Aligned_cols=103  Identities=15%  Similarity=0.083  Sum_probs=74.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|..++|..+++..-...++|-..+--+-.+|. ..+.+++|..+|++++..+|+ -+.+..|=..+.+. +.|.+-.+.
T Consensus        56 ~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~-d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~-~~yk~qQka  132 (932)
T KOG2053|consen   56 LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR-DLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVRE-KSYKKQQKA  132 (932)
T ss_pred             hcCchhHHHHHhhhccCCCCchHHHHHHHHHHH-HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHH-HHHHHHHHH
Confidence            489999998888888888888888887776655 799999999999999999999 65555554444433 244443333


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      --+.-+.-|+++.+.++...++...-
T Consensus       133 a~~LyK~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen  133 ALQLYKNFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             HHHHHHhCCcccchHHHHHHHHHHhc
Confidence            33333478999998887776665543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.92  E-value=1.6  Score=45.41  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCH----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAV--------EPPDA----------ESFSKYASFLWRVRNDLWAAEETFLEA  496 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeL--------DPdda----------eAL~nLG~~L~e~~GD~eEAee~feKA  496 (536)
                      .++..-|+-+| ..|+|++|...|+.||..        .|.++          ..+.||..++... ++|-++++.....
T Consensus       179 ~~l~q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~-~e~yevleh~sei  256 (329)
T KOG0545|consen  179 PVLHQEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK-EEYYEVLEHCSEI  256 (329)
T ss_pred             HHHHHhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH-HHHHHHHHHHHHH
Confidence            45666777778 689999999999998753        46555          4567888877764 6999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHH
Q 009385          497 ISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       497 LeLDPdNpeal~NyA~~L~e  516 (536)
                      +..+|+|..+++..|.+...
T Consensus       257 L~~~~~nvKA~frRakAhaa  276 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAA  276 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHh
Confidence            99999999998887776543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.67  E-value=3.4  Score=46.97  Aligned_cols=111  Identities=15%  Similarity=0.108  Sum_probs=96.5

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .+|++......|++++.-=....+.|.+|+..+. ..|+.+-|...+.++.++. |.-+..+...+.+- +..|++..|.
T Consensus       309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~-e~~~n~~~A~  386 (577)
T KOG1258|consen  309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFE-ESNGNFDDAK  386 (577)
T ss_pred             hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH-HhhccHHHHH
Confidence            3489999999999999998999999999999887 5799999999999999887 66667777777654 5567999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      ..+++...--|+..++-......+...|..++|.
T Consensus       387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence            9999999977999998888888899999888776

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.61  E-value=1.1  Score=40.89  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=58.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHhCCCCHHHH
Q 009385          441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRN----------DLWAAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       441 A~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~G----------D~eEAee~feKALeLDPdNpeal  507 (536)
                      |.-++ ..||+-+|.+..+..+..++++.   ..+..-|.+++.+..          -+-.|.++|.++..+.|+.+..+
T Consensus         3 A~~~~-~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    3 AKDYF-ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHH-HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            44455 58999999999999999999988   455566776654432          25689999999999999998888


Q ss_pred             HHHHHHHH
Q 009385          508 ANYANFLW  515 (536)
Q Consensus       508 ~NyA~~L~  515 (536)
                      +.+|.-+.
T Consensus        82 ~~la~~l~   89 (111)
T PF04781_consen   82 FELASQLG   89 (111)
T ss_pred             HHHHHHhh
Confidence            88887543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=89.57  E-value=1.7  Score=48.74  Aligned_cols=64  Identities=20%  Similarity=0.397  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      +.+.+--..|.++|...|+++++|..-|...++..-+.+.|...|.++|+.+|+.+..+..|=.
T Consensus       119 ~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  119 KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence            3477777899999999999999999888877765555999999999999999999999877643

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.41  E-value=5  Score=40.36  Aligned_cols=68  Identities=22%  Similarity=0.265  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHh------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----------------CHHHHHHH
Q 009385          435 LLLANYAQFLYIVA------HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN----------------DLWAAEET  492 (536)
Q Consensus       435 eAL~NLA~lL~e~~------GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G----------------D~eEAee~  492 (536)
                      .++..+|.+.. ..      ++.+++.++|++|++++|+...+++.+|.++...-.                -...|+..
T Consensus       253 ~~~l~~a~w~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~  331 (352)
T PF02259_consen  253 KAFLLLAKWLD-ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEG  331 (352)
T ss_pred             HHHHHHHHHHH-hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence            45566676655 34      889999999999999999999999999986654311                12458899


Q ss_pred             HHHHHHhCCCC
Q 009385          493 FLEAISADPTN  503 (536)
Q Consensus       493 feKALeLDPdN  503 (536)
                      |-+|+.+.++.
T Consensus       332 y~~al~~~~~~  342 (352)
T PF02259_consen  332 YLKALSLGSKY  342 (352)
T ss_pred             HHHHHhhCCCc
Confidence            99999998883

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.93  E-value=0.092  Score=56.01  Aligned_cols=72  Identities=25%  Similarity=0.209  Sum_probs=59.6

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      ..|+++.|++.|-+||.++|..+..|...+.++..++ +..+|+.-+..|++++|+.+.-+-.-+.+..-+|+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~  197 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLK-KPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN  197 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeecc-CCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence            3688999999999999999999999999999888764 89999999999999999988654333333334443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.67  E-value=0.83  Score=51.15  Aligned_cols=102  Identities=13%  Similarity=0.095  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHhcCCHHH
Q 009385          418 RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA-IAVEPP--------DAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       418 eAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKA-LeLDPd--------daeAL~nLG~~L~e~~GD~eE  488 (536)
                      .+..--+.++.+..+.+.+++-.+++.| .+|+|.+|.+.+... +...|.        ..-.++|+|.+.+.. +.|..
T Consensus       224 ~~krevK~vmn~a~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~-~~y~~  301 (696)
T KOG2471|consen  224 LAKREVKHVMNIAQDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL-GCYQA  301 (696)
T ss_pred             HHHHhhhhhhhhcCCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh-hhHHH
Confidence            3334444566667788888888999999 699999999988754 333344        223568999998876 58999


Q ss_pred             HHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHcCCCc
Q 009385          489 AEETFLEAIS---------ADP---------TNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       489 Aee~feKALe---------LDP---------dNpeal~NyA~~L~elGr~E  521 (536)
                      +..+|.+|++         +.|         ..-+++||.|..|...|+.-
T Consensus       302 ~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl  352 (696)
T KOG2471|consen  302 SSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPL  352 (696)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcH
Confidence            9999999996         122         23467999999999999864

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.45  E-value=3.2  Score=35.49  Aligned_cols=54  Identities=20%  Similarity=0.175  Sum_probs=41.0

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPD---------AESFSKYASFLWRVRNDLWAAEETFLEAISADP  501 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPdd---------aeAL~nLG~~L~e~~GD~eEAee~feKALeLDP  501 (536)
                      ..+||.+|.+.+.+.+......         ..++.++|.+.... |++++|+..+++|+++.-
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~-G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF-GHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence            4799999977777777654222         45677888877664 799999999999999754

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=87.40  E-value=3  Score=49.40  Aligned_cols=84  Identities=21%  Similarity=0.243  Sum_probs=61.6

Q ss_pred             CCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------
Q 009385          414 ADYFRTELLYQTG----------LAQEPN----------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIA----------  463 (536)
Q Consensus       414 gdyeeAee~YqKA----------LeLdPd----------n~eAL~NLA~lL~e~~GD~deAEe~FeKALe----------  463 (536)
                      +|.+.|+++|+|+          |..+|.          ++.+|...|+.+. ..|++|.|+.+|..|-.          
T Consensus       872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~GemdaAl~~Y~~A~D~fs~VrI~C~  950 (1416)
T KOG3617|consen  872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDAALSFYSSAKDYFSMVRIKCI  950 (1416)
T ss_pred             ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh-cccchHHHHHHHHHhhhhhhheeeEee
Confidence            6888999999864          455554          4455555676555 68999999999987643          


Q ss_pred             -----------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385          464 -----------VEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISA  499 (536)
Q Consensus       464 -----------LDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeL  499 (536)
                                 -...|-.|-+.+|.-| +..|++.+|+.+|.+|-..
T Consensus       951 qGk~~kAa~iA~esgd~AAcYhlaR~Y-En~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  951 QGKTDKAARIAEESGDKAACYHLARMY-ENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             ccCchHHHHHHHhcccHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHH
Confidence                       3456677888888854 5567999999998886543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.92  E-value=4.6  Score=45.44  Aligned_cols=97  Identities=11%  Similarity=0.076  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCH----HHHHHHHHHHHHhc
Q 009385          414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVE---PPDA----ESFSKYASFLWRVR  483 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLD---Pdda----eAL~nLG~~L~e~~  483 (536)
                      -+..+++++.+..+...|.+.   ..+..+|.+++...++.+.|...+++|..+-   |+.-    +++..|+.++....
T Consensus        23 PkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~  102 (629)
T KOG2300|consen   23 PKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLA  102 (629)
T ss_pred             hhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhc
Confidence            488899999999999988753   4567789988878999999999999998875   5553    45566676666555


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385          484 NDLWAAEETFLEAISADPTNSYYAANY  510 (536)
Q Consensus       484 GD~eEAee~feKALeLDPdNpeal~Ny  510 (536)
                      +.+..|+..+++|+++.-++|....++
T Consensus       103 ~s~~~~KalLrkaielsq~~p~wsckl  129 (629)
T KOG2300|consen  103 QSFPPAKALLRKAIELSQSVPYWSCKL  129 (629)
T ss_pred             CCCchHHHHHHHHHHHhcCCchhhHHH
Confidence            578899999999999999998664443

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=86.59  E-value=1.6  Score=28.63  Aligned_cols=28  Identities=36%  Similarity=0.590  Sum_probs=14.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          450 DYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       450 D~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      +.++|...|++++...|.++..|..|..
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            4455555555555555555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=86.52  E-value=3.1  Score=48.03  Aligned_cols=29  Identities=21%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             hhcccchhhhhhhhhHHHHHHHHHhhhHH
Q 009385          172 EAGESAYCSVKKAFSSMVFIIRELHSFTL  200 (536)
Q Consensus       172 ~~~~~~~~s~~~afssmv~~i~~~~~~~l  200 (536)
                      +.-..++-+|++.|-+-+..++-|-+--+
T Consensus        78 ~~T~~~~~~vn~c~er~lv~mHkmpRIwl  106 (835)
T KOG2047|consen   78 CPTDPAYESVNNCFERCLVFMHKMPRIWL  106 (835)
T ss_pred             CCCChHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            55577888888888777776666665544

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=86.30  E-value=9.1  Score=40.93  Aligned_cols=49  Identities=10%  Similarity=0.049  Sum_probs=22.0

Q ss_pred             hCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009385          448 AHDYDRAEEYFKRAIAVEPP-DAESFSKYASFLWRVRNDLWAAEETFLEA  496 (536)
Q Consensus       448 ~GD~deAEe~FeKALeLDPd-daeAL~nLG~~L~e~~GD~eEAee~feKA  496 (536)
                      +|-+..|.++.+-.+.+||. |+-+...+=+.+....++++-=++.++..
T Consensus       116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~  165 (360)
T PF04910_consen  116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP  165 (360)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence            44455555555555555555 44443333333333334444444444433

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=86.26  E-value=1.9  Score=28.28  Aligned_cols=29  Identities=24%  Similarity=0.326  Sum_probs=15.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          485 DLWAAEETFLEAISADPTNSYYAANYANF  513 (536)
Q Consensus       485 D~eEAee~feKALeLDPdNpeal~NyA~~  513 (536)
                      ++++|...|++++...|.++.++..|+.+
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            34555555555555555555555555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=85.93  E-value=11  Score=38.41  Aligned_cols=93  Identities=15%  Similarity=0.094  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHHhC-CCCH-------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHh----C---CCCH-------H
Q 009385          414 ADYFRTELLYQTGLAQE-PNDP-------LLLANYAQFLYIVAH-DYDRAEEYFKRAIAV----E---PPDA-------E  470 (536)
Q Consensus       414 gdyeeAee~YqKALeLd-Pdn~-------eAL~NLA~lL~e~~G-D~deAEe~FeKALeL----D---Pdda-------e  470 (536)
                      |+++.|+.+|.|+=.+. ..++       ..++|.|.-++ ..+ +++.|...+++|+++    .   ...+       .
T Consensus         7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~   85 (278)
T PF08631_consen    7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS   85 (278)
T ss_pred             CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence            67777777777776654 3332       34555555555 456 777888888877776    2   1222       2


Q ss_pred             HHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHH
Q 009385          471 SFSKYASFLWRVR--NDLWAAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       471 AL~nLG~~L~e~~--GD~eEAee~feKALeLDPdNpeal  507 (536)
                      ++..++.++...+  ...++|..+.+.+-.--|+.+..+
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            3445555554432  123455555555555556666654

It is also involved in sporulation [].

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.84  E-value=4.5  Score=42.18  Aligned_cols=106  Identities=11%  Similarity=0.041  Sum_probs=71.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHH------HHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCH-HHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLA------NYAQFLYIVAHDYDRAEEYFKRAIAVE-----PPDA-ESFSKYASFLW  480 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~------NLA~lL~e~~GD~deAEe~FeKALeLD-----Pdda-eAL~nLG~~L~  480 (536)
                      .++|++|..++.+|++-.-+|...+.      ..|.+ .+....+.+++.+|+||..+.     |+-+ .++-.-|.++ 
T Consensus        44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaamL-ake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l-  121 (308)
T KOG1585|consen   44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAML-AKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL-  121 (308)
T ss_pred             hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-
Confidence            36999999999999977666654332      23333 335778999999999999875     3332 4455556555 


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCCc
Q 009385          481 RVRNDLWAAEETFLEAISADPTNS------YYAANYANFLWNTGGED  521 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDPdNp------eal~NyA~~L~elGr~E  521 (536)
                      + .-++++|+.+|++++++--.+-      +.+...+.+|....+++
T Consensus       122 e-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~  167 (308)
T KOG1585|consen  122 E-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT  167 (308)
T ss_pred             h-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence            3 2489999999999998643322      23455666676666553

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.33  E-value=7.3  Score=42.82  Aligned_cols=102  Identities=11%  Similarity=0.003  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC---HHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND---LWAAE  490 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD---~eEAe  490 (536)
                      -.++-+.+...+|+.+|+...+|+....++...-. ++..-....+++|++||.|-.+|..--.+.-.....   ..+=+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            55666778899999999999999999988773222 478899999999999999988876554443333222   56668


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      ++..++|.-++.|..++++...+|-.
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~  195 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLST  195 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHH
Confidence            89999999999999999988887763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=84.93  E-value=6.4  Score=46.82  Aligned_cols=62  Identities=26%  Similarity=0.378  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRA----------IAVEPP----------DAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKA----------LeLDPd----------daeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ...|++||.-|. ..+|.+.|++||+|+          |.-+|.          |...|...|..+ +-.|+.+.|+.+|
T Consensus       858 r~Tyy~yA~~Le-ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y  935 (1416)
T KOG3617|consen  858 RNTYYNYAKYLE-ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFY  935 (1416)
T ss_pred             hhhHHHHHHHHH-hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHH
Confidence            357889998777 689999999999985          222333          334455566543 4557899999988


Q ss_pred             HHHH
Q 009385          494 LEAI  497 (536)
Q Consensus       494 eKAL  497 (536)
                      ..|-
T Consensus       936 ~~A~  939 (1416)
T KOG3617|consen  936 SSAK  939 (1416)
T ss_pred             HHhh
Confidence            8764

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=84.49  E-value=14  Score=42.30  Aligned_cols=104  Identities=13%  Similarity=0.146  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH---HHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAE---EYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAE---e~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e  487 (536)
                      |++..|..+|++.....|+..++-.....+.+ ..|+.+.+.   +++...+.-.-++   ...+..++.+.+..+++.+
T Consensus       380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~-r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~  458 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEYPGLVEVVLRKINWER-RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDAD  458 (577)
T ss_pred             ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHH-HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHH
Confidence            79999999999999999998888777777777 578888887   3333333322222   2345677778888888999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          488 AAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       488 EAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      .|...+.+|+...|++...+..+-.+....+
T Consensus       459 ~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  459 LARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            9999999999999999988888888777666

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.33  E-value=4.4  Score=46.83  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=54.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385          441 AQFLYIVAHDYDRAEEYFKRAIAVEPPDA------ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       441 A~lL~e~~GD~deAEe~FeKALeLDPdda------eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L  514 (536)
                      |.-++ ..++|..+.+.|+..++.-|.|-      ....+++.+|.... +++.|.+++++|=+.||.++-.....-...
T Consensus       361 A~~~F-~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~-QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~  438 (872)
T KOG4814|consen  361 AKKLF-KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE-QLDNAVEVYQEAEEVDRQSPLCQLLMLQSF  438 (872)
T ss_pred             hHHHH-HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            43445 46788888888888888777663      45566776666654 788888888888888888876655444444


Q ss_pred             HHcCCCcccc
Q 009385          515 WNTGGEDTCF  524 (536)
Q Consensus       515 ~elGr~E~cl  524 (536)
                      ...|.-+.++
T Consensus       439 ~~E~~Se~AL  448 (872)
T KOG4814|consen  439 LAEDKSEEAL  448 (872)
T ss_pred             HHhcchHHHH
Confidence            4444444333

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=83.15  E-value=1.9  Score=49.23  Aligned_cols=100  Identities=17%  Similarity=0.120  Sum_probs=81.1

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009385          420 ELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE--SFSKYASFLWRVRNDLWAAEETFLEAI  497 (536)
Q Consensus       420 ee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae--AL~nLG~~L~e~~GD~eEAee~feKAL  497 (536)
                      -.....+++.+|.+..++. ++.+|+..+|+.-+|.+|+..|+-..|++..  ++..+|.+|.+. |...+|--.+..|+
T Consensus       199 ~~~~~~glq~~~~sw~lH~-~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~Ra-G~sadA~iILhAA~  276 (886)
T KOG4507|consen  199 GHLIHEGLQKNTSSWVLHN-MASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRA-GFSADAAVILHAAL  276 (886)
T ss_pred             HHHHHHhhhcCchhHHHHH-HHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHc-ccccchhheeehhc
Confidence            3455678888888776664 5668888899999999999999999888764  677889888775 68888888888998


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          498 SADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       498 eLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      .-.|.-+.-++.++.++..+|++.
T Consensus       277 ~dA~~~t~n~y~l~~i~aml~~~N  300 (886)
T KOG4507|consen  277 DDADFFTSNYYTLGNIYAMLGEYN  300 (886)
T ss_pred             cCCccccccceeHHHHHHHHhhhh
Confidence            888877777888889888888654

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=82.78  E-value=17  Score=34.34  Aligned_cols=84  Identities=15%  Similarity=0.048  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCCCCHHH---
Q 009385          414 ADYFRTELLYQTGLAQEPN------------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIA-------VEPPDAES---  471 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd------------n~eAL~NLA~lL~e~~GD~deAEe~FeKALe-------LDPddaeA---  471 (536)
                      +.|++|..-|++|++..-.            |...+..|+..+. ..|+|++++...++||.       ++-+....   
T Consensus        23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~-~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa  101 (144)
T PF12968_consen   23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALA-GLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA  101 (144)
T ss_dssp             T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence            7899999999999987422            3456777777777 58999887777777765       55555443   


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385          472 -FSKYASFLWRVRNDLWAAEETFLEAISA  499 (536)
Q Consensus       472 -L~nLG~~L~e~~GD~eEAee~feKALeL  499 (536)
                       .++-|..+-. .|+.++|...|++|.++
T Consensus       102 aVfsra~Al~~-~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  102 AVFSRAVALEG-LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence             3455555554 47999999999999875

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=82.40  E-value=14  Score=42.18  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      .-...|...|.+|-+..-.-..++..-|.+-|...+|.+-|.+.|+-.|+..++.+..-..|..+|... |+-..|..+|
T Consensus       380 eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~l-Ndd~N~R~LF  458 (656)
T KOG1914|consen  380 EGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHL-NDDNNARALF  458 (656)
T ss_pred             hhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHh-CcchhHHHHH
Confidence            355667778888877544433555555555444579999999999999999999999888888888876 4788899999


Q ss_pred             HHHHHh--CCCCH-HHHHHHHHHHHHcCCC
Q 009385          494 LEAISA--DPTNS-YYAANYANFLWNTGGE  520 (536)
Q Consensus       494 eKALeL--DPdNp-eal~NyA~~L~elGr~  520 (536)
                      ++++.-  +|+-. .++..+-.+-.+.|+.
T Consensus       459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL  488 (656)
T KOG1914|consen  459 ERVLTSVLSADKSKEIWDRMLEYESNVGDL  488 (656)
T ss_pred             HHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence            999886  44332 4555555555555543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=82.35  E-value=3.9  Score=30.01  Aligned_cols=30  Identities=23%  Similarity=0.305  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHH--HHHHHHhCCC
Q 009385          437 LANYAQFLYIVAHDYDRAEEY--FKRAIAVEPP  467 (536)
Q Consensus       437 L~NLA~lL~e~~GD~deAEe~--FeKALeLDPd  467 (536)
                      +..+|..++ ..|++++|++.  |+-+..++|.
T Consensus         4 ~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    4 LYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccc
Confidence            334444444 24444444444  3244444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=81.66  E-value=4.8  Score=40.50  Aligned_cols=115  Identities=10%  Similarity=0.081  Sum_probs=80.6

Q ss_pred             cccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHh
Q 009385          389 DESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI----VAHDYDRAEEYFKRAIAV  464 (536)
Q Consensus       389 d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e----~~GD~deAEe~FeKALeL  464 (536)
                      ..-.+|+....+.-.+++--     ++|++|...|++--.. -.++..-+.||..+..    ..+++..|.++|+.|-  
T Consensus        29 Y~EK~Pe~C~lLgdYlEgi~-----knF~~A~kv~K~nCde-n~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC--  100 (248)
T KOG4014|consen   29 YEEKRPESCQLLGDYLEGIQ-----KNFQAAVKVFKKNCDE-NSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIAC--  100 (248)
T ss_pred             cccCCchHHHHHHHHHHHHH-----HHHHHHHHHHHhcccc-cCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHh--
Confidence            34556777776666554322     5788888888776654 3467888888854331    1237899999999986  


Q ss_pred             CCCCHHHHHHHHHHHHHhc----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          465 EPPDAESFSKYASFLWRVR----N--DLWAAEETFLEAISADPTNSYYAANYANF  513 (536)
Q Consensus       465 DPddaeAL~nLG~~L~e~~----G--D~eEAee~feKALeLDPdNpeal~NyA~~  513 (536)
                      +-+.+.+-.++|.+++...    +  +.++|++|+.+|..++  +..+.++|...
T Consensus       101 ~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m  153 (248)
T KOG4014|consen  101 DANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTM  153 (248)
T ss_pred             ccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHH
Confidence            5788999999998777521    1  4889999999998774  45566666543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=81.63  E-value=2.3  Score=48.14  Aligned_cols=73  Identities=19%  Similarity=0.072  Sum_probs=63.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          449 HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV--RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       449 GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~--~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      .....|+..|.+++..-|+....|.+++.+++..  +|+.-.|+.-...|+++||..-.+++.++.+|.+++++.
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~  462 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYL  462 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHH
Confidence            4566889999999999999999999999877653  367778888899999999999999999999999999763

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=81.33  E-value=1.2  Score=47.69  Aligned_cols=64  Identities=11%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      +-|.+--..|..++...|.|.++|.--+..-+...++.+.+...|.++|+++|+++..|..|-.
T Consensus       121 k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr  184 (435)
T COG5191         121 KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR  184 (435)
T ss_pred             HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence            3455666788999999999999998755554446899999999999999999999999887643

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.20  E-value=6.1  Score=39.62  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCHHHHH
Q 009385          432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD----AESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd----aeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      ++++..+.+|.+|.  ..|.++|+..|.++|++.+.+    ++++..|+.+++.. |+++.|=
T Consensus       139 ~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~-~~~e~AY  198 (203)
T PF11207_consen  139 ETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL-KNYEQAY  198 (203)
T ss_pred             CCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh-cchhhhh
Confidence            57899999996544  799999999999999987544    89999999988875 5888773

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.74  E-value=5.6  Score=37.95  Aligned_cols=54  Identities=24%  Similarity=0.232  Sum_probs=45.6

Q ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q 009385          411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP  466 (536)
Q Consensus       411 Dd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP  466 (536)
                      .|.+.....+++.++.++..| ++..+.+++.++. ..|+.++|....+++..+-|
T Consensus       122 ~~~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~-~~G~~~eA~~~~~~~~~lyP  175 (193)
T PF11846_consen  122 PDPEMLEAYIEWAERLLRRRP-DPNVYQRYALALA-LLGDPEEARQWLARARRLYP  175 (193)
T ss_pred             CCHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence            344667778888889999889 6888888888877 68999999999999999999

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	536
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		8e-04

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS 473
            DY +    YQ  L  +PN+     N     Y    DY +A EY+++A+ ++P +A+++ 
Sbjct: 23  GDYQKAIEYYQKALELDPNNASAWYNLGN-AYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Query: 474 KYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
           +  +  ++ + D   A E + +A+  DP N+    N  N
Sbjct: 82  RRGNAYYK-QGDYQKAIEDYQKALELDPNNAKAKQNLGN 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	536
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	4e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-04
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-08
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	2e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-06
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-04
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	2e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-04

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 1/96 (1%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           Y+  L + PN+   L   A+ + +       A   +++ + +E  +  +     ++ +  
Sbjct: 77  YKELLQKAPNNVDCLEACAE-MQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT 135

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
                   ET  + +S+     Y           T 
Sbjct: 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 1/103 (0%)

Query: 419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF 478
           TE+ Y T + +       LA      Y    +YD+A  ++K  +   P + +     A  
Sbjct: 38  TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM 97

Query: 479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
               R     A   + + +  +  N        N+ + T  ++
Sbjct: 98  QVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 19/106 (17%)

Query: 428 AQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS---------- 477
            Q  ++ L   +      I A    +A  YF++ IA+     E +               
Sbjct: 1   GQSVDEMLQKVS----AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKL 56

Query: 478 -----FLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
                  ++   +   A   + E +   P N       A      G
Sbjct: 57  ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG 102

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 58.4 bits (141), Expect = 3e-09
 Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 4/105 (3%)

Query: 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYA---QFLYIVAHDYDRAEEYFKRAIAVEPP 467
           D++          +  +   P++  L    A     +     +    E+  + A+   P 
Sbjct: 186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245

Query: 468 DAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
             +     A F  R +++   A E   +A+   P N+Y       
Sbjct: 246 VTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQIGC 289

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES---FSKYASFL 479
            +       N   + +  A  L+ +A  Y+ AE YF++  + E           +Y +F 
Sbjct: 323 LKKADEANDNLFRVCSILAS-LHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYANFL 514
                    A   F+E +  +   S       + L
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQ-KSREKEKMKDKL 415

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 5/101 (4%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIV--AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLW 480
           ++  L ++P +P   +  A   Y +        A +  ++AI + P +       A  L 
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220

Query: 481 RVR---NDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           ++R    +    E+   EA+   P  +    + A F     
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 443 FLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN--DLWAAEETFLEAISAD 500
            L    +  +RA+  F++A+  +P + E  S  A   +R+ N      A +   +AI  +
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205

Query: 501 PTNSYYAANYANFLWNTGGED 521
           P N Y     A  L     E 
Sbjct: 206 PDNQYLKVLLALKLHKMREEG 226

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 19/117 (16%)

Query: 420 ELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
           E L +  L + P    +L + A+F      + D+A E  K+A+   P +A    +     
Sbjct: 233 EKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291

Query: 480 WRVRNDLWA------------------AEETFLEAISADPTNSYYAANYANFLWNTG 518
                 +                    A     +A  A+       +  A+      
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
           D  R  L  +  +   P D +     A    +   D    E   +R +A+ P   E+ ++
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLAD-AELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
               +   +     A     +A  A P +   A    + L + G
Sbjct: 63  LGR-VRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 1/80 (1%)

Query: 447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY 506
           +  D  R     + A+   P D  ++   A        D  A E      ++  P +   
Sbjct: 1   MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELG-MGDTTAGEMAVQRGLALHPGHPEA 59

Query: 507 AANYANFLWNTGGEDTCFPL 526
            A      W          L
Sbjct: 60  VARLGRVRWTQQRHAEAAVL 79

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
            +    +L Q      P  P +           A   + A   + RA  + P +    ++
Sbjct: 72  RHAEAAVLLQQASDAAPEHPGIALWLGH-ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQ 130

Query: 475 YASFLWRVRNDLWAAE 490
             ++  R+ +      
Sbjct: 131 LLNWRRRLCDWRALDV 146

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 19/110 (17%), Positives = 32/110 (29%)

Query: 414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS 473
             Y +   +Y   LA E  DP L+          A         FK+A          + 
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394

Query: 474 KYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC 523
             A   +    D   A + F   +        Y   Y ++L +   ++  
Sbjct: 395 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT 444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 55.1 bits (132), Expect = 2e-08
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 2/108 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLL-ANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS 473
            Y +   +Y   LA E  DP L+   Y +F    A         FK+A          + 
Sbjct: 114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYV 172

Query: 474 KYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
             A   +    D   A + F   +        Y   Y ++L +   ++
Sbjct: 173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 423 YQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
            +  L  +P +    L+ A   Q+L       D+A+E F++A++++P  AE  + Y  FL
Sbjct: 31  IEDALKSDPKNELAWLVRAEIYQYL----KVNDKAQESFRQALSIKPDSAEINNNYGWFL 86

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
               N    +   F +A+ ADPT         N
Sbjct: 87  CGRLNRPAESMAYFDKAL-ADPTYPTPYIANLN 118

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 3/98 (3%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPDAESFSKYASFLW 480
           ++  L+ +P+   +  NY  FL    +    +  YF +A+A    P    +         
Sbjct: 65  FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124

Query: 481 RVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           + +     AE     +++A P         A      G
Sbjct: 125 K-QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 450 DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN 509
           DY +A    + A+  +P +  ++   A     +      A+E+F +A+S  P ++    N
Sbjct: 23  DYRQATASIEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQALSIKPDSAEINNN 81

Query: 510 YANFLWNTGGE 520
           Y  FL      
Sbjct: 82  YGWFLCGRLNR 92

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 16/126 (12%), Positives = 42/126 (33%), Gaps = 6/126 (4%)

Query: 395 ETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRA 454
              +R   P+       +     +     Q  +   P +    A   +  Y+  +DY  +
Sbjct: 8   AEYQRQRDPLHQFASQQNPEAQLQA---LQDKIRANPQNSEQWALLGE-YYLWQNDYSNS 63

Query: 455 EEYFKRAIAVEPPDAESFSKYASFLWRVRNDLW--AAEETFLEAISADPTNSYYAANYAN 512
              +++A+ +   +AE ++  A+ L+   +            +A++ D          A+
Sbjct: 64  LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123

Query: 513 FLWNTG 518
             +   
Sbjct: 124 DAFMQA 129

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 392 LDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDY 451
           L  E  E + +  T            +T  +    LA + N+   L   A     +  +Y
Sbjct: 73  LRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA-SDAFMQANY 131

Query: 452 DRAEEYFKRAIAVEPPDAE 470
            +A E +++ + +  P   
Sbjct: 132 AQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           +Q   A+       L  +A        + +   +  +  I   P ++E ++      +  
Sbjct: 3   WQAVRAEYQRQRDPLHQFASQ-----QNPEAQLQALQDKIRANPQNSEQWALLGE-YYLW 56

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE 520
           +ND   +   + +A+     N+   A  A  L+    +
Sbjct: 57  QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ 94

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.3 bits (121), Expect = 4e-08
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 429 QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWA 488
           ++P DP      AQ  ++   +  RA   F+  +  +P    ++        R  +    
Sbjct: 2   EDPEDPFTRYALAQ-EHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDD 59

Query: 489 AEETFLEAISADP--TNSYYAANYANFLWNTGGED 521
           A +T+ + I            +   +      G +
Sbjct: 60  AIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLE 94

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
            +  LAQ  ++ LL     +  Y     +D A  + + A+  +P  + ++      L   
Sbjct: 8   LEAMLAQGTDNMLLRFTLGK-TYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG- 65

Query: 483 RNDLWAAEETFLEAISADPTNSYYAA--NYANFL 514
           + D   A + +   ++A  +            FL
Sbjct: 66  QGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL 99

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 2/99 (2%)

Query: 420 ELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
           E        QEP++  +L   +  ++      DR+  +   AI   P  AE++S   + +
Sbjct: 19  ERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN-V 76

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           ++ R  L  A E +  A+   P       N A  L   G
Sbjct: 77  YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.8 bits (107), Expect = 5e-05
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           Y+  L  +P+      N A    + A D + A + +  A+   P      S   + L   
Sbjct: 90  YRHALRLKPDFIDGYINLA-AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA- 147

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
              L  A+  +L+AI   P  +   +N        G
Sbjct: 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.5 bits (106), Expect = 6e-05
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           Y T L   P     L N A  +     + + A   +++A+ V P  A + S  AS L + 
Sbjct: 294 YNTALRLCPTHADSLNNLAN-IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ- 351

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           +  L  A   + EAI   PT +   +N  N L    
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           Y   +  +PN  +  +N    ++    +   A  +F++A+ ++P   +++    + L   
Sbjct: 158 YLKAIETQPNFAVAWSNLGC-VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE- 215

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
                 A   +L A+S  P ++    N A   +  G
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 450 DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN 509
           D++ AE +  +    EP +       +S  ++    L  +      AI  +P  +   +N
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSN 72

Query: 510 YANFLWNTG 518
             N     G
Sbjct: 73  LGNVYKERG 81

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 9e-04
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           Y   L+  PN  ++  N A  +Y      D A + ++RAI ++P   +++   A+ L   
Sbjct: 226 YLRALSLSPNHAVVHGNLA-CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE- 283

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           +  +  AE+ +  A+   P        +A+ L N  
Sbjct: 284 KGSVAEAEDCYNTALRLCP-------THADSLNNLA 312

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 423 YQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
            +  L  +P+       LA   Q       +   A+E +++A+A +  +A   + Y  FL
Sbjct: 60  LRKALEIDPSSADAHAALAVVFQTE----MEPKLADEEYRKALASDSRNARVLNNYGGFL 115

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
              +     A +  LEA   D      +  + N
Sbjct: 116 -YEQKRYEEAYQRLLEAS-QDTLYPERSRVFEN 146

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 450 DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN 509
           + ++A+   ++A+ ++P  A++ +  A        +   A+E + +A+++D  N+    N
Sbjct: 52  NTEQAKVPLRKALEIDPSSADAHAALAVVFQTE-MEPKLADEEYRKALASDSRNARVLNN 110

Query: 510 YANFL 514
           Y  FL
Sbjct: 111 YGGFL 115

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PPDAESFSKYASFLW 480
           Y+  LA +  +  +L NY  FLY     Y+ A +    A      P  +  F        
Sbjct: 94  YRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152

Query: 481 RVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           +       A+E F +++  +      A   A+ L+   
Sbjct: 153 Q-MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 3/88 (3%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           ++  L    N P +    A  L     +Y  A +Y+         +A S         +V
Sbjct: 164 FEKSLRLNRNQPSVALEMAD-LLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA-KV 221

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANY 510
             D   A    L+     P  S     +
Sbjct: 222 FEDRDTAASYGLQLKRLYP-GSLEYQEF 248

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 2/101 (1%)

Query: 422 LYQTGLAQEPNDPLLLANYAQF-LYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLW 480
             +    Q+ +  L     A   L         A   F+       P     +  A+   
Sbjct: 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211

Query: 481 RVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
             +    AAE    EA+  D  +     N      + G   
Sbjct: 212 A-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP 251

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
           ++Q    +     LLL   A   ++    ++ AE   + A+  +    E+          
Sbjct: 188 IFQEMADKCSPTLLLLNGQAA-CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH 246

Query: 482 VRNDLWAAEETFLEAISADPTNSY---YAANYANF 513
           +            +   A  ++ +   Y A   +F
Sbjct: 247 LGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDF 281

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.7 bits (108), Expect = 4e-06
 Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 2/104 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
                            +    L + A   Y     Y+ A   F+    ++  D+  F  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVLDHYDSRFFLG 60

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
             +   +       A  ++      D     +  + A  L   G
Sbjct: 61  LGACR-QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 11/93 (11%), Positives = 21/93 (22%), Gaps = 2/93 (2%)

Query: 420 ELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
             ++Q     +  D                 YD A   +     ++  +       A  L
Sbjct: 41  HXVFQALCVLDHYDSRFFLGLGA-CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
            +   +L  AE     A         +      
Sbjct: 100 LQ-XGELAEAESGLFLAQELIANXPEFXELSTR 131

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.9 bits (113), Expect = 7e-06
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 426 GLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND 485
           G    P     L N A        + + A   +++A+ V P  A + S  AS L + +  
Sbjct: 1   GPGSCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGK 58

Query: 486 LWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           L  A   + EAI   PT +   +N  N L    
Sbjct: 59  LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 91

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
           ++Q     +  D                 Y++A + +     ++  +       A    +
Sbjct: 40  IFQALCMLDHYDARYFLGLGA-CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98

Query: 482 VRNDLWAAEETFLEAISADPTNSYYAANYAN 512
           +  DL  AE  F  A +       + A  A 
Sbjct: 99  L-GDLDGAESGFYSARALAAAQPAHEALAAR 128

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
                    +    L       Y  A  +D A++ F+    ++  DA  F    +   + 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACR-QS 64

Query: 483 RNDLWAAEETFLEAISADPTNS---YYAAN 509
                 A +++      D       ++AA 
Sbjct: 65  LGLYEQALQSYSYGALMDINEPRFPFHAAE 94

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 3/96 (3%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
                    N  L L     F ++  ++   A+   + +I +  P   S+   A  L   
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLK-NNLLDAQVLLQESINLH-PTPNSYIFLALTLAD- 288

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           + +     + F +A+  +P       +     +   
Sbjct: 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 324

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 2/96 (2%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           +Q   +  P +       A  LY     +  +E +F       P   E  + +A  L   
Sbjct: 333 FQKAQSLNPENVYPYIQLACLLYKQG-KFTESEAFFNETKLKFPTLPEVPTFFAEILTD- 390

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           R D   A + +  A   +             +    
Sbjct: 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 4/99 (4%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAH---DYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
                   P+     A   +          +++ A +Y++ AI ++P +   +S  +   
Sbjct: 10  IAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNIS-AC 68

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           +    DL    E   +A+   P +S      A+   + G
Sbjct: 69  YISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 55/451 (12%), Positives = 129/451 (28%), Gaps = 132/451 (29%)

Query: 51  LVCRYVQGLDRSALFGPQLAKQPHRSRSCEYYPKPRIQHAVRRTC---------SASLDA 101
           +   +    D S+           R  S +   +  ++      C         + + +A
Sbjct: 209 IDPNWTSRSDHSS-------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 102 FDENENETNC------RD----NAVNSESESR----DSRDGFVDPPWEEDEIIQESIERK 147
           F+      +C      R     + +++ + +                E   ++ + ++ +
Sbjct: 262 FN-----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCR 314

Query: 148 ANSVDL--------PLSLRIIKRKLQ-----WQDGFREAGESAYCSVKKAFSSMVFIIRE 194
               DL        P  L II   ++     W D ++        ++ ++       +  
Sbjct: 315 PQ--DLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLTTIIESS------LNV 365

Query: 195 LHSFTLQMREILFYEDLQGIL---VRVQREMHASFVWLFQQVFSHTPTLMVYVMI--LLA 249
           L     +      ++ L  +      +   +  S +W    V      ++V  +    L 
Sbjct: 366 LEPAEYRKM----FDRL-SVFPPSAHIPTIL-LSLIW--FDVIKSDVMVVVNKLHKYSLV 417

Query: 250 N-------FTVHSMASNTSLAATPPPAAAYHEYASTVEVHNQRRHKFDSSSIKPFSV--- 299
                    ++ S+     L        A H   S V+ +N  +  FDS  + P  +   
Sbjct: 418 EKQPKESTISIPSIYL--ELKVKLENEYALH--RSIVDHYNIPK-TFDSDDLIPPYLDQY 472

Query: 300 -FSSRSGKTTSIGGNNGGGGKIRPIGSGTDGDGGIDRVDHFRTIVPDGA---SQLSSFGT 355
            +S                     IG         +R+  FR +  D      ++    T
Sbjct: 473 FYSH--------------------IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 356 TRDAESVSGQVDREEELNLWNSIVDEASQMQVTDESLDHE----TMERFVSPVTANIEAD 411
             +A      ++  ++L  +           + D    +E     +  F+  +  N+   
Sbjct: 513 AWNA--SGSILNTLQQLKFYKP--------YICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQ 442
            Y D      L +  L    ++ +    + Q
Sbjct: 563 KYTD------LLRIAL-MAEDEAIFEEAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 22/214 (10%), Positives = 49/214 (22%), Gaps = 75/214 (35%)

Query: 23  SSQALASAISSPSSKRRSRSSCSSDIGPLVCRYVQGLDRSALFGPQLAKQPHRSRSCEYY 82
               L   +         R   +    P            ++    +          + +
Sbjct: 303 VKSLLLKYLDCRPQDLP-REVLT--TNPRRL---------SIIAESIRDGLATW---DNW 347

Query: 83  PKPRIQHAVRRTCSASLDAFDENENETNCRDNAVNSESESRDSRDGFVDPPWEEDEIIQE 142
                   +     +SL+  +  E        +V            F             
Sbjct: 348 KHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSV------------FPP----------- 383

Query: 143 SIERKANSVDLPLS-LRIIKRKLQWQDGFREAGESAYCSVKKAFSSMVFIIRELHSFTL- 200
                  S  +P   L +I     W D  +                   ++ +LH ++L 
Sbjct: 384 -------SAHIPTILLSLI-----WFDVIKSDVMV--------------VVNKLHKYSLV 417

Query: 201 ---QMREILFYEDLQGILVRVQRE----MHASFV 227
                   +    +  + ++V+ E    +H S V
Sbjct: 418 EKQPKESTISIPSIY-LELKVKLENEYALHRSIV 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 71/610 (11%), Positives = 159/610 (26%), Gaps = 209/610 (34%)

Query: 87  IQHAVRRTCSASLDAFDENENETNCRD------NAVNSE-------SESRDSR------- 126
            Q+  +   S   DAF +N    +C+D      + ++ E       S+   S        
Sbjct: 14  HQYQYKDILSVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 127 ---------DGFVDPPWEED-EIIQESIERKANSVDLPLSLRIIKRKLQWQDGFREAGES 176
                      FV+     + + +   I+ +     +   + I +R   + D        
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN------- 123

Query: 177 AYCSVKKAFSSMVFIIR-ELHSFTLQMREILFYED-------LQG-------ILV----- 216
                 + F+    + R + +   L++R+ L  E        + G        +      
Sbjct: 124 ------QVFAKY-NVSRLQPY---LKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 217 --RVQREMHASFVWL-FQQVFSHTPTLMVYVMILLANFTVHSMASNTSLA--ATPPPAAA 271
             +VQ +M     WL  +    ++P     V+ +L         + TS +  ++      
Sbjct: 173 SYKVQCKMDFKIFWLNLKNC--NSPET---VLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 272 YHEYASTVEVHNQRRHK---------FDSSSIKPFSVFSSRSGKTTSIGGN----NGGGG 318
           +   A    +   + ++          ++ +   F+  S +   TT         +    
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATT 286

Query: 319 KIRPIGSGTDGDGGIDRVDHFRTIVPDGASQLSSFGTTRDAESVS-------GQVDREEE 371
               +   +      +        +      L      R+  + +        +  R+  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-----REVLTTNPRRLSIIAESIRDG- 340

Query: 372 LNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRT------------ 419
           L  W++         V  + L    +E  +      +E  +Y   F              
Sbjct: 341 LATWDNW------KHVNCDKLTT-IIESSL----NVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 420 ---ELLYQTGLAQEPND--------PLLLANYAQFLY----------------------I 446
               L++   +  +            L+     +                         I
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 447 VAHDYDRAEEYFKRAIAVEPPD-------------------AESFSK-YASFLW---RVR 483
           V H Y+  + +    +     D                      F   +  F +   ++R
Sbjct: 450 VDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 484 ND--LWAAEETFLEAIS-----------ADPTNSYYAANYANFLWNTG-----GEDTC-- 523
           +D   W A  + L  +             DP          +FL          + T   
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

Query: 524 -FPLSSPDSS 532
              L + D +
Sbjct: 569 RIALMAEDEA 578

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 2/109 (1%)

Query: 410 ADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA 469
           +    D   +    +   A   +    + +YA   Y      + AE +F+     +  + 
Sbjct: 12  STAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNV 70

Query: 470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           +     A+          AA+  +  A +    +     +         
Sbjct: 71  DYIMGLAAIYQIKEQFQQAADL-YAVAFALGKNDYTPVFHTGQCQLRLK 118

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 2/107 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
           +  +T    +  L     +   L    + L +       AE    +A+ +EP   E++++
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
                W+ + D+ +A   F  A++          N +  L     + 
Sbjct: 143 LGEVYWK-KGDVTSAHTCFSGALTHCKNKVSL-QNLSMVLRQLQTDS 187

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 2/99 (2%)

Query: 420 ELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
           + LY    +      +  A   +    V  + ++  +  +  +     +A++       L
Sbjct: 55  DRLYCFRDSYFETHSVEDA--GRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKAL 112

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
               +    AE    +A+  +P             W  G
Sbjct: 113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG 151

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 421 LLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLW 480
            L    +   P++P+       +  +V H  + A  Y  +A  +E     ++  Y     
Sbjct: 77  YLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSF- 135

Query: 481 RVRNDLWAAEETFLEAISADPTNSYYAANY 510
            V ++   A   +  A         +    
Sbjct: 136 AVESEHDQAMAAYFTAAQLMK--GCHLPML 163

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 12/104 (11%), Positives = 30/104 (28%), Gaps = 1/104 (0%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
           D+     L    + ++P     L  +   L    +  +       + + + P +  S+  
Sbjct: 37  DFKMCYKLTSVVMEKDPFHASCLPVHIGTLV-ELNKANELFYLSHKLVDLYPSNPVSWFA 95

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
              +   V +    A     +A + + T       Y +      
Sbjct: 96  VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES 139

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           Y T         L +       Y + ++   AE +F +A+++ P D     +     ++ 
Sbjct: 148 YFTAAQLMKGCHLPMLYIGL-EYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ- 205

Query: 483 RNDLWAAEETFLEAISADPT--NSYYAANYANFLWNTG 518
             +   AE+ FL+A+       N      +   L N G
Sbjct: 206 NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 13/101 (12%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 427 LAQEPNDPLLLANYAQFLYIVAH------DYDRAEEYFKRAIAVEPPDAESFSKYASFLW 480
             +   + + +  +   L  + H       Y  A +Y ++A+ + P +A ++S    ++ 
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIG-YIH 280

Query: 481 RVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
            +  +   A + F  A+     +++      + +    G+ 
Sbjct: 281 SLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 11/93 (11%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
            +   +  +P++ +     A  +++       A     + IA++     +  +    L +
Sbjct: 25  QFHAAVDGDPDNYIAYYRRA-TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83

Query: 482 VRNDLWAAEETFLEAISADPTNSYYAANYANFL 514
               L  AE+ F + + ++P+        +  +
Sbjct: 84  Q-GKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
            Y      +P +   + N A  +Y    DY++  E  ++AI V   + E + + A    R
Sbjct: 26  HYDKAKELDPTNMTYITNQAA-VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84

Query: 482 V------RNDLWAAEETFLEAISADPTNSYYAA 508
           +            A   + ++++   T      
Sbjct: 85  IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 9/96 (9%)

Query: 431 PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR------- 483
           P  P +   +A+ L     D+D+A + +  AI +E      +   A  + +         
Sbjct: 369 PEAPEVPNFFAEILTDKN-DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427

Query: 484 -NDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
             +   A     +A   DP +       A       
Sbjct: 428 VENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 3/96 (3%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
                  +    + L +   F ++  +D   A E  K+AI +  P   S+   A  +   
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFL-KNDPLGAHEDIKKAIELF-PRVNSYIYMALIMAD- 282

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           RND       F +A+  D  NS    +     +   
Sbjct: 283 RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 2/104 (1%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           +      +P +       A   Y     +D  E  F  A    P   E  + +A  L   
Sbjct: 327 FDKAKELDPENIFPYIQLACLAYREN-KFDDCETLFSEAKRKFPEAPEVPNFFAEILTD- 384

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFPL 526
           +ND   A + +  AI  +          A  +           +
Sbjct: 385 KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 9/97 (9%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAH--------DYDRAEEYFKRAIAVEPPDAESFSK 474
           Y   +  E     +    A  +             ++  A    ++A  ++P   ++   
Sbjct: 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYA 511
            A    + + D+  A   F E+     T         
Sbjct: 455 LAQMKLQ-QEDIDEAITLFEESADLARTMEEKLQAIT 490

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
            Y   +  +P++     N A  +Y     +    ++ ++A+ V       +   A  + R
Sbjct: 30  HYDKAIELDPSNITFYNNKAA-VYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88

Query: 482 V------RNDLWAAEETFLEAISADPTNSYYAA 508
                  +NDL  A + F  ++S          
Sbjct: 89  AGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKK 121

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAH---DYDRAEEYFKRAIAVEPPDAESFSKYASFL 479
           +       P    + +              DY++A E F +AI     DA  +  +A+ L
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 480 WRVRNDLWAAEETFLEAISADPTNSYYAANYAN 512
             V N+L  A   + +A+  D +    A  Y  
Sbjct: 68  SSV-NELERALAFYDKALELDSS---AATAYYG 96

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 12/102 (11%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES 471
            + D  R    Y + +        LL   A  L++    +        + + ++P + + 
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV-RSRFIDVLAITTKILEIDPYNLDV 341

Query: 472 FSKYASFLWRVRNDLWAAEETFLEAISADPTN--SYYA-ANY 510
           +  + + L     +         + +   P    ++ A   Y
Sbjct: 342 YPLHLASLHE-SGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 2/96 (2%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           Y T         L         ++   +   A EY + + A+   D    ++     +  
Sbjct: 430 YTTAARLFQGTHLPYLFLGM-QHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN- 487

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           ++D+  A   F  A+            +A    N G
Sbjct: 488 KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 28/153 (18%), Positives = 45/153 (29%), Gaps = 13/153 (8%)

Query: 369 EEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLA 428
           E   +   S VD   ++Q      + E M +  +     +   DY D   T   Y  G  
Sbjct: 4   ERAKSAIESDVDFWDKLQA-----ELEEMAKRDAEAHPWLS--DYDDL--TSATYDKGYQ 54

Query: 429 QEPNDPLLLANYAQFLYIVAH---DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND 485
            E  +PL          +      D   A   F+ A+  +P   E++    +       +
Sbjct: 55  FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114

Query: 486 LWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           L  A       +   P N       A    N  
Sbjct: 115 L-LAISALRRCLELKPDNQTALMALAVSFTNES 146

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 450 DYDRAEEYFKRAIAV---EPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY 506
              +A  Y+++AIA        AE +    S  +R   +   AE      +   P +   
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGS-TFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 507 AANYANFLWNTG 518
              YA  L+N G
Sbjct: 64  RVFYAMVLYNLG 75

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 2/90 (2%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
           YQ  + ++     +        +    ++  A +Y ++ I     D + F +     +  
Sbjct: 97  YQAAVDRDTTRLDMYGQIG-SYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY- 154

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYAN 512
             +   A+ +F++ +   P         A 
Sbjct: 155 NKEYVKADSSFVKVLELKPNIYIGYLWRAR 184

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 450 DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN 509
           ++D A E F   + ++P    +       L+        A++  L     DP + + +  
Sbjct: 92  NFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRDKLAQDDLLAFYQDDPNDPFRSLW 150

Query: 510 YANFLWNTGGED 521
                     + 
Sbjct: 151 LYLAEQKLDEKQ 162

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
           +  +    +     LL      LY        A   F +A+A+ P   E F+    +L +
Sbjct: 31  ILASRALTDDERAQLLYERG-VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89

Query: 482 VRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
              +  AA E F   +  DPT +Y   N    L+  G
Sbjct: 90  -AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 125

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 427 LAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF--LWRVRN 484
           L +  N  ++    A    +V    D + +     I +E     S+  Y     ++ ++ 
Sbjct: 270 LPELNNLSIIYQIKA-VSALVKGKTDESYQAINTGIDLEM----SWLNYVLLGKVYEMKG 324

Query: 485 DLWAAEETFLEAISADPTNSYY 506
               A + +L A +  P  +  
Sbjct: 325 MNREAADAYLTAFNLRPGANTL 346

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Length = 493

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 14/111 (12%), Positives = 27/111 (24%), Gaps = 2/111 (1%)

Query: 411 DDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE 470
            D    +                 LL  N+  ++ +     +   + F      E     
Sbjct: 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV-LKKRGLELFRKLFIELGN-EGVGPH 320

Query: 471 SFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED 521
            F   A   +            F   +   P ++     +  FL   G E+
Sbjct: 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEE 371

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 423 YQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV 482
               L     D  L    A+  +I   +  +A    K A  ++  + E+F K ++  +++
Sbjct: 166 LDKILEVCVWDAELRELRAE-CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224

Query: 483 RNDLWAAEETFLEAISADPTNSYYAANYAN 512
             D   +     E +  D  +    A+Y  
Sbjct: 225 -GDHELSLSEVRECLKLDQDHKRCFAHYKQ 253

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.9 bits (96), Expect = 8e-04
 Identities = 10/97 (10%), Positives = 24/97 (24%), Gaps = 2/97 (2%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
           L    L   P   + +A++            R      +A  + P    + + +      
Sbjct: 60  LTGAPLNLTPEQVVAIASHDGGKQ-ALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA 118

Query: 482 VRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
           +   +        +A    P      A++        
Sbjct: 119 L-ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	536
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.73
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.66
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.61
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.6
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.59
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.57
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.57
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.55
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.55
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.53
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.53
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.53
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.52
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.52
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.52
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.51
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.51
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.51
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.5
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.47
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.46
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.45
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.44
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.41
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.39
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.39
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.39
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.39
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.39
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.39
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.39
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.38
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.38
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.38
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.38
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.38
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.36
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.36
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.36
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.36
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.35
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.35
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.35
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.35
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.35
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.35
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.35
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.34
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.33
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.33
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.33
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.33
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.31
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.3
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.3
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.29
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.27
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.27
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.26
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.26
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.26
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.25
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.25
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.25
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.23
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.23
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.22
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.21
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.2
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.2
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.2
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.2
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.2
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.17
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.17
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.17
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.16
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.14
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.14
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.13
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.11
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.11
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.1
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.1
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.08
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.08
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.05
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.01
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.01
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.01
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.0
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.0
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.97
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.95
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.93
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.93
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.92
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.9
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.9
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.89
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.89
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.87
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.87
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.87
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.85
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.82
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.8
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.79
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.79
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.78
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.78
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.78
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.74
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.73
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.71
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.71
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.7
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.7
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.68
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.67
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.66
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.62
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.6
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.59
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.58
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.58
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.57
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.57
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.57
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.56
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.55
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.53
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.53
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.46
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.38
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.37
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.24
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.23
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.93
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.85
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.8
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.77
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.77
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.72
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.68
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.68
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.63
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.63
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.61
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.5
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.46
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.45
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.31
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.05
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.92
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.8
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.55
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.43
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.22
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.14
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.06
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.01
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.81
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.68
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.65
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.57
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.05
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.06
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.01
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.9
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.49
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.75
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.21
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.5
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	85.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.52

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.73  E-value=4.7e-17  Score=139.95  Aligned_cols=99  Identities=20%  Similarity=0.326  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |+|++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.+++++|.++... |++++|+++|
T Consensus        27 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~~~A~~~~  104 (126)
T 4gco_A           27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM-REWSKAQRAY  104 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-CCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999998875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 009385          494 LEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L  514 (536)
                      ++|++++|+|++++.+++.+|
T Consensus       105 ~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          105 EDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999998875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.66  E-value=2.1e-16  Score=138.82  Aligned_cols=104  Identities=15%  Similarity=0.128  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH-H
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE-T  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee-~  492 (536)
                      ++|++|+.+|+++|+++|+++.+|+++|.++. ..|++++|+.+|+++++++|++++++.++|.++... |++++|.. +
T Consensus        45 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~aa~~~  122 (150)
T 4ga2_A           45 KEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN-DVTDGRAKYW  122 (150)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CSSSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHH
Confidence            89999999999999999999999999998877 689999999999999999999999999999888775 47766554 5


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      +++|++++|+++.++...+.++...|+
T Consensus       123 ~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          123 VERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            689999999999998888988888876

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.65  E-value=1.9e-15  Score=132.66  Aligned_cols=107  Identities=20%  Similarity=0.194  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+..|++++..+|+++.+++++|.+++ ..|++++|+++|+++|+++|+++.++.++|.++... |++++|+.+|
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~~~A~~~~   88 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE-ENTDKAVECY   88 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             ChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CchHHHHHHH
Confidence            78999999999999999999999999999988 699999999999999999999999999999988775 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      ++|++++|+++.++.++|.++...|+.++
T Consensus        89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           89 RRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            99999999999999999999999998653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=2.9e-15  Score=138.20  Aligned_cols=109  Identities=14%  Similarity=0.007  Sum_probs=95.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA-----------HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR  481 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~-----------GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e  481 (536)
                      .|++++|+.+|+++++++|+++.+++++|.++. ..           |++++|+.+|+++++++|+++.++.++|.++..
T Consensus        52 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~  130 (217)
T 2pl2_A           52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL  130 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            388999999999999999999999999998877 57           899999999999999999999999999988876


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          482 VRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      . |++++|+++|++|++++ +++.++.++|.++..+|+.+++.
T Consensus       131 ~-g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~  171 (217)
T 2pl2_A          131 L-GERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEAL  171 (217)
T ss_dssp             T-TCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             c-CChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHH
Confidence            4 68999999999999999 89999999999999999876543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.61  E-value=7.8e-15  Score=135.27  Aligned_cols=112  Identities=18%  Similarity=0.169  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+..|++|++++|+++.++.++|.++. ..|++++|+.+|++|++++ +++.++.++|.++... |++++|+.+|
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~  174 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALE-DTPEIRSALAELYLSM-GRLDEALAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999999888 6999999999999999999 9999999999988875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccccCCCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCFPLSS  528 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~clpl~~  528 (536)
                      +++++++|+++.++.++|.++...|+.+++....+
T Consensus       175 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          175 AKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99999999999999999999999999887765443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.61  E-value=4.7e-15  Score=135.88  Aligned_cols=104  Identities=12%  Similarity=0.116  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLAN----------------YAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~N----------------LA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      |++++|+.+|+++++++|+++.++++                +|.++. ..|++++|+.+|+++++++|+++.++.++|.
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   96 (208)
T 3urz_A           18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAPNNVDCLEACAE   96 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            89999999999999999999999999                998887 6999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          478 FLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      ++... |++++|+.+|+++++++|+++.++.++|.+++..|+
T Consensus        97 ~~~~~-g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           97 MQVCR-GQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            98875 699999999999999999999999999999987764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=3.2e-14  Score=114.50  Aligned_cols=106  Identities=18%  Similarity=0.263  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++... |++++|+.+|
T Consensus        26 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~  103 (131)
T 2vyi_A           26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL-NKHVEAVAYY  103 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence            79999999999999999999999999999887 699999999999999999999999999999988774 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +++++++|+++.++.+++.++..+|+.+
T Consensus       104 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A          104 KKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999998864

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.60  E-value=1.3e-14  Score=161.03  Aligned_cols=109  Identities=18%  Similarity=0.156  Sum_probs=102.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|++++|+.+|++||+++|+++.+|+|+|.++. ..|++++|+++|++||+++|+++++++++|.++... |++++|+++
T Consensus        56 ~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~-g~~~eAi~~  133 (723)
T 4gyw_A           56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS-GNIPEAIAS  133 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            389999999999999999999999999999888 699999999999999999999999999999988774 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |++|++++|+++.++.++|.+|..+|+.+++
T Consensus       134 ~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          134 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            9999999999999999999999999987643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.60  E-value=2.2e-14  Score=147.07  Aligned_cols=107  Identities=8%  Similarity=0.025  Sum_probs=98.6

Q ss_pred             CC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 AD-YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gd-yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      ++ +++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+|..+|+++|.++... |++++|+++
T Consensus       145 g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~-g~~~eAl~~  222 (382)
T 2h6f_A          145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQY  222 (382)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc-CChHHHHHH
Confidence            65 999999999999999999999999999887 689999999999999999999999999999988875 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH-cCCCcc
Q 009385          493 FLEAISADPTNSYYAANYANFLWN-TGGEDT  522 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~e-lGr~E~  522 (536)
                      |++||+++|+++.+++++|.+|.. .|..++
T Consensus       223 ~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence            999999999999999999999999 444243

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.59  E-value=6.1e-15  Score=163.58  Aligned_cols=108  Identities=21%  Similarity=0.243  Sum_probs=103.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|++||+++|+++.+|+|+|.++. ..|++++|+++|++||+++|+++++++++|.++... |++++|+++|
T Consensus        23 G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~-g~~~~A~~~~  100 (723)
T 4gyw_A           23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM-QDVQGALQCY  100 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999998875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|++++|+++.++.++|.+|.++|+.+++
T Consensus       101 ~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A          101 TRAIQINPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999997654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.59  E-value=1.3e-15  Score=137.19  Aligned_cols=111  Identities=12%  Similarity=0.114  Sum_probs=93.6

Q ss_pred             cccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 009385          389 DESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD  468 (536)
Q Consensus       389 d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd  468 (536)
                      ...++|+....+.....+..   ..|++++|+.+|++++.++|+++.+|+++|.++. ..|++++|+.+|++|++++|++
T Consensus        28 al~l~p~~~~~~~~lg~~~~---~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           28 INAIPDDMMDDIYSYAYDFY---NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             GCCSCHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSC
T ss_pred             HhCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCC
Confidence            34566666654444332222   3389999999999999999999999999998887 6999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 009385          469 AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS  504 (536)
Q Consensus       469 aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp  504 (536)
                      +.+++++|.++... |++++|+.+|++|++++|+.+
T Consensus       104 ~~~~~~lg~~~~~l-g~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          104 YTPVFHTGQCQLRL-KAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHH
T ss_pred             cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence            99999999988874 699999999999999999876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=2.4e-14  Score=119.05  Aligned_cols=101  Identities=19%  Similarity=0.145  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~   95 (126)
T 3upv_A           18 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV-KEYASALETL   95 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH-hCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhC------CCCHHHHHHHHHHHHH
Q 009385          494 LEAISAD------PTNSYYAANYANFLWN  516 (536)
Q Consensus       494 eKALeLD------PdNpeal~NyA~~L~e  516 (536)
                      +++++++      |+++.++..++.+...
T Consensus        96 ~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           96 DAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            9999999      9999999888887654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.57  E-value=2.4e-14  Score=116.67  Aligned_cols=104  Identities=19%  Similarity=0.261  Sum_probs=98.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++.+|++..++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus        30 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~  107 (133)
T 2lni_A           30 GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM-KDYTKAMDVY  107 (133)
T ss_dssp             TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH-hhHHHHHHHH
Confidence            79999999999999999999999999999887 689999999999999999999999999999988774 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      +++++++|+++.++.+++.++...|+
T Consensus       108 ~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          108 QKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            99999999999999999999988774

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.57  E-value=2.9e-14  Score=124.42  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=90.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|++|+.+|+++++++|+++.+++++|.+++ ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+.+|
T Consensus        25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~  102 (164)
T 3sz7_A           25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM-ADYKGAKEAY  102 (164)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999998875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH
Q 009385          494 LEAISADPTNSYYAANYANF  513 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~  513 (536)
                      +++++++|+++.++.+.+..
T Consensus       103 ~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A          103 EKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHhCCCchHHHHHHHHH
Confidence            99999999998855554444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.55  E-value=5.1e-15  Score=130.25  Aligned_cols=94  Identities=13%  Similarity=0.104  Sum_probs=86.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|++++|+.+|++++.++|+++.+|+++|.++. ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+.+
T Consensus        34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~-g~~~~A~~~  111 (148)
T 2vgx_A           34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX-GELAEAESG  111 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc-CCHHHHHHH
Confidence            389999999999999999999999999998887 699999999999999999999999999999988774 699999999


Q ss_pred             HHHHHHhCCCCHHHHH
Q 009385          493 FLEAISADPTNSYYAA  508 (536)
Q Consensus       493 feKALeLDPdNpeal~  508 (536)
                      |++|++++|+++....
T Consensus       112 ~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A          112 LFLAQELIANXPEFXE  127 (148)
T ss_dssp             HHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHCcCCCcchH
Confidence            9999999999886543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.55  E-value=5.8e-14  Score=126.34  Aligned_cols=106  Identities=9%  Similarity=-0.015  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009385          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLE  495 (536)
Q Consensus       416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feK  495 (536)
                      +-.+-..|+++++++|+++.+++++|..++ ..|++++|+.+|+++++++|+|+.+|+++|.++... |++++|+.+|++
T Consensus        18 ~~~~~~~l~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~-g~~~~Ai~~~~~   95 (151)
T 3gyz_A           18 AINSGATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK-EQFQQAADLYAV   95 (151)
T ss_dssp             HHHTSCCTGGGCCSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHCCCCHHHHhCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-ccHHHHHHHHHH
Confidence            333445678999999999999999999888 699999999999999999999999999999988875 699999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          496 AISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       496 ALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |++++|+++.+++++|.+|..+|+.+++
T Consensus        96 al~l~P~~~~~~~~lg~~~~~lg~~~eA  123 (151)
T 3gyz_A           96 AFALGKNDYTPVFHTGQCQLRLKAPLKA  123 (151)
T ss_dssp             HHHHSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999997654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=2.3e-13  Score=108.60  Aligned_cols=103  Identities=28%  Similarity=0.441  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++++..+|++..++.++|.++. ..|++++|+.+|+++++.+|+++.++..+|.++... |++++|+.+|
T Consensus        23 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~  100 (125)
T 1na0_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYY  100 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence            89999999999999999999999999999887 689999999999999999999999999999988874 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      +++++++|+++.++.+++.++...|
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A          101 QKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999988765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.54  E-value=1.9e-14  Score=119.89  Aligned_cols=107  Identities=13%  Similarity=0.129  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ---EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeL---dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      |++++|+.+|++|+++   +|+++.+++++|.+++ ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~   81 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNL-GRYEQGV   81 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHc-CCHHHHH
Confidence            7899999999999999   6999999999999888 699999999999999999999999999999998875 6999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      .+|+++++++|+++.+......+....+..++
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~  113 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYADKLDE  113 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987666666666665554

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=1.2e-13  Score=120.92  Aligned_cols=109  Identities=13%  Similarity=0.015  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+..+++++..+|+++.++.++|.++. ..++++.|...++++++++|++..++..+|.++... |++++|+++|
T Consensus        53 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~  130 (184)
T 3vtx_A           53 GLPNDAIESLKKFVVLDTTSAEAYYILGSANF-MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSM-GEHDKAIEAY  130 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh-CCchhHHHHH
Confidence            78888888888888888888888888887766 578888899999999999999999999999888764 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      +++++++|+++.++.++|.++..+|+.+++.
T Consensus       131 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A          131 EKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999887654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.53  E-value=2e-14  Score=123.51  Aligned_cols=97  Identities=16%  Similarity=0.064  Sum_probs=88.6

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 009385          425 TGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS  504 (536)
Q Consensus       425 KALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp  504 (536)
                      ++..+||+.++++.++|..++ ..|++++|+++|++||+++|+++.++.++|.++... |++++|+..|++|++++|+++
T Consensus         4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL-MEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhhhhhh
Confidence            455689999999999999988 699999999999999999999999999999998875 699999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCccc
Q 009385          505 YYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       505 eal~NyA~~L~elGr~E~c  523 (536)
                      .++.++|.++..+|+.+++
T Consensus        82 ~a~~~lg~~~~~~~~~~~A  100 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSKA  100 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHH
Confidence            9999999999999987543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.53  E-value=2.6e-14  Score=125.18  Aligned_cols=109  Identities=12%  Similarity=0.112  Sum_probs=95.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCH--HHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDL--WAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~--eEAe  490 (536)
                      .+++++|+..|+++++.+|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++.++|.+++...|++  ++|+
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~  101 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR  101 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence            478999999999999999999999999998887 6899999999999999999999999999999844445788  9999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      .+|+++++++|+++.++.++|.++...|+.++
T Consensus       102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  133 (177)
T 2e2e_A          102 AMIDKALALDSNEITALMLLASDAFMQANYAQ  133 (177)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHH
Confidence            99999999999999999999999999998653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.53  E-value=4.4e-14  Score=144.87  Aligned_cols=109  Identities=10%  Similarity=0.014  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD-YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD-~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      +++++|+.+|++||+++|++..+|+++|.++. ..|+ +++|+.+|++||+++|+++.+|+++|.++... |++++|+.+
T Consensus       111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~-g~~~eAl~~  188 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPSQELEF  188 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHH
T ss_pred             CChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-cCHHHHHHH
Confidence            78999999999999999999999999999888 5886 99999999999999999999999999988875 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      |++||+++|+|+.+++++|.++..+|+.++++
T Consensus       189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl  220 (382)
T 2h6f_A          189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNEL  220 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence            99999999999999999999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.53  E-value=2.9e-13  Score=107.29  Aligned_cols=99  Identities=18%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus        18 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~   95 (118)
T 1elw_A           18 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL-NRFEEAKRTY   95 (118)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH-hhHHHHHHHH
Confidence            89999999999999999999999999999887 689999999999999999999999999999988764 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 009385          494 LEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L  514 (536)
                      +++++++|+++.++..++.+.
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           96 EEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHhh
Confidence            999999999999999888765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.52  E-value=8.2e-14  Score=119.74  Aligned_cols=98  Identities=13%  Similarity=0.057  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|++++.++|+++.+|+++|.++. ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+.+|
T Consensus        32 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~  109 (142)
T 2xcb_A           32 GKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL-GDLDGAESGF  109 (142)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH
Q 009385          494 LEAISADPTNSYYAANYANF  513 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~  513 (536)
                      +++++++|+++.+......+
T Consensus       110 ~~al~~~p~~~~~~~~~~~~  129 (142)
T 2xcb_A          110 YSARALAAAQPAHEALAARA  129 (142)
T ss_dssp             HHHHHHHHTCGGGHHHHHHH
T ss_pred             HHHHHhCCCCcchHHHHHHH
Confidence            99999999998765444333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.52  E-value=1.3e-13  Score=125.18  Aligned_cols=108  Identities=19%  Similarity=0.160  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEP-NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdP-dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      +++++|+.+|+++++++| .+..+++++|.++. ..|++++|+++|+++++++|+++.++.++|.++... |++++|+.+
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~   98 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDM-KNNQEYIAT   98 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc-ccHHHHHHH
Confidence            899999999999999999 99999999998887 699999999999999999999999999999998875 699999999


Q ss_pred             HHHHHHhCCCCH-------HHHHHHHHHHHHcCCCccc
Q 009385          493 FLEAISADPTNS-------YYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       493 feKALeLDPdNp-------eal~NyA~~L~elGr~E~c  523 (536)
                      |+++++++|+++       .++.++|.++...|+.+++
T Consensus        99 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  136 (228)
T 4i17_A           99 LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA  136 (228)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence            999999999999       6689999999999987654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.52  E-value=1e-13  Score=121.92  Aligned_cols=104  Identities=13%  Similarity=0.019  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009385          418 RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAI  497 (536)
Q Consensus       418 eAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKAL  497 (536)
                      .+...|++++.++|++..+++++|.+++ ..|++++|+.+|++++.++|+++.+++++|.++... |++++|+.+|++|+
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al   82 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM-GQYDLAIHSYSYGA   82 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence            3445789999999999999999999888 699999999999999999999999999999988764 69999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          498 SADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       498 eLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++|+++.+++++|.++..+|+.+++
T Consensus        83 ~l~p~~~~~~~~lg~~~~~~g~~~~A  108 (148)
T 2vgx_A           83 VMDIXEPRFPFHAAECLLQXGELAEA  108 (148)
T ss_dssp             HHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999987543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.51  E-value=6.4e-14  Score=130.27  Aligned_cols=100  Identities=15%  Similarity=0.169  Sum_probs=89.3

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD----------YDRAEEYFKRAIAVEPPDAESFSKYASFLWR  481 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD----------~deAEe~FeKALeLDPddaeAL~nLG~~L~e  481 (536)
                      ..+.|++|++.|++|++++|+++++|+++|.++. ..++          +++|+.+|++||+++|+++++|+++|.+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~-~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLL-ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3478999999999999999999999999999877 4555          5699999999999999999999999999987


Q ss_pred             hc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          482 VR----------NDLWAAEETFLEAISADPTNSYYAANYAN  512 (536)
Q Consensus       482 ~~----------GD~eEAee~feKALeLDPdNpeal~NyA~  512 (536)
                      .+          |++++|+++|++|++++|++..+..++..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            53          58999999999999999999988766554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.51  E-value=2.5e-14  Score=123.00  Aligned_cols=101  Identities=14%  Similarity=0.042  Sum_probs=91.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 009385          421 LLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISAD  500 (536)
Q Consensus       421 e~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLD  500 (536)
                      ..|++++.++|++..+++++|..++ ..|++++|+.+|++++.++|+++.++.++|.++... |++++|+.+|++|++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSL-GLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC
Confidence            5788999999999999999999888 699999999999999999999999999999988764 69999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCCccc
Q 009385          501 PTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       501 PdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |+++.+++++|.++..+|+.+++
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A  105 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGA  105 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999997644

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.51  E-value=1.7e-13  Score=116.06  Aligned_cols=108  Identities=14%  Similarity=0.193  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus        27 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~  104 (166)
T 1a17_A           27 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRDY  104 (166)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            89999999999999999999999999999887 699999999999999999999999999999988764 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHH--HHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANF--LWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~--L~elGr~E~c  523 (536)
                      +++++++|+++.++..++.+  +...|+.+++
T Consensus       105 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A  136 (166)
T 1a17_A          105 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERA  136 (166)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988555554  7677765543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.51  E-value=7.6e-14  Score=121.53  Aligned_cols=103  Identities=19%  Similarity=0.152  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ------------------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKY  475 (536)
Q Consensus       414 gdyeeAee~YqKALeL------------------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nL  475 (536)
                      |+|++|+.+|.+||.+                  +|.+..+++|+|.++. ..|++++|+.+|++||+++|+++.+++++
T Consensus        25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~  103 (162)
T 3rkv_A           25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKREETNEKALFRR  103 (162)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            8999999999999999                  7888899999999887 69999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcC
Q 009385          476 ASFLWRVRNDLWAAEETFLEAISADPTNS-YYAANYANFLWNTG  518 (536)
Q Consensus       476 G~~L~e~~GD~eEAee~feKALeLDPdNp-eal~NyA~~L~elG  518 (536)
                      |.++... |++++|+.+|++|++++|+++ .+...++.+....+
T Consensus       104 g~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~  146 (162)
T 3rkv_A          104 AKARIAA-WKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA  146 (162)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            9998875 699999999999999999999 66667777665544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.50  E-value=1.1e-13  Score=117.89  Aligned_cols=90  Identities=13%  Similarity=0.052  Sum_probs=79.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+..|+++++++|+++.+|+++|.++. ..|++++|+.+|++|++++|+++.++.++|.++... |++++|+.+|
T Consensus        31 g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~-g~~~~A~~~~  108 (121)
T 1hxi_A           31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE-HNANAALASL  108 (121)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999999887 699999999999999999999999999999988875 5999999999


Q ss_pred             HHHHHhCCCCHH
Q 009385          494 LEAISADPTNSY  505 (536)
Q Consensus       494 eKALeLDPdNpe  505 (536)
                      +++++++|+++.
T Consensus       109 ~~al~~~P~~~~  120 (121)
T 1hxi_A          109 RAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHC-------
T ss_pred             HHHHHhCcCCCC
Confidence            999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=3.5e-13  Score=118.03  Aligned_cols=90  Identities=11%  Similarity=0.022  Sum_probs=61.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++++.|...+.+++.++|++..++..+|.++. ..|++++|+++|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~  164 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK-GLRDEAVKYF  164 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC-CCHHHHHHHH
Confidence            56667777777777777777777777776655 467777777777777777777777777777666553 5677777777


Q ss_pred             HHHHHhCCCCHH
Q 009385          494 LEAISADPTNSY  505 (536)
Q Consensus       494 eKALeLDPdNpe  505 (536)
                      ++|++++|+++.
T Consensus       165 ~~al~~~p~~a~  176 (184)
T 3vtx_A          165 KKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHTTHHHHH
T ss_pred             HHHHhCCccCHH
Confidence            777777766543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.50  E-value=5.2e-13  Score=106.90  Aligned_cols=108  Identities=26%  Similarity=0.416  Sum_probs=101.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++.+|++..++.++|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|
T Consensus        15 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~   92 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYY   92 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHHHHHHH
Confidence            79999999999999999999999999998887 58999999999999999999999999999998876 47999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++++.+|+++.++..+|.++...|+.+++
T Consensus        93 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           93 QKALELDPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHccHHHH
Confidence            999999999999999999999999987654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.7e-13  Score=111.24  Aligned_cols=101  Identities=22%  Similarity=0.248  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      +++++|+.+|+++++++|++   ..++.++|.++. ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+
T Consensus        42 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~  119 (148)
T 2dba_A           42 GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL-GRLDQAV  119 (148)
T ss_dssp             TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-TCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc-CCHHHHH
Confidence            79999999999999999998   899999999887 699999999999999999999999999999988875 6999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      .+|+++++++|+++.++..++.+...
T Consensus       120 ~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          120 LDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            99999999999999999888877543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.49  E-value=2.9e-13  Score=121.58  Aligned_cols=106  Identities=15%  Similarity=0.112  Sum_probs=99.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP----------------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~----------------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      ++|++|+.+|++|+++.|+++                .++.++|.++. ..|++++|+.+|+++++++|+++.+++++|.
T Consensus        52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~  130 (198)
T 2fbn_A           52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV  130 (198)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            899999999999999999998                89999999887 6999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          478 FLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ++... |++++|+.+|++|++++|+++.++.+++.++...|+.+
T Consensus       131 ~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A          131 ANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             HHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHc-ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence            98875 69999999999999999999999999999998887553

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.48  E-value=6.7e-13  Score=112.57  Aligned_cols=109  Identities=15%  Similarity=0.108  Sum_probs=102.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++.+|+++.++..+|.++... |++++|+.+
T Consensus        55 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~  132 (186)
T 3as5_A           55 TGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL-GRFDEAIDS  132 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc-CcHHHHHHH
Confidence            389999999999999999999999999999887 689999999999999999999999999999988774 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |+++++.+|+++.++.++|.++...|+.+++
T Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A          133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999987654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.48  E-value=1.9e-13  Score=135.64  Aligned_cols=106  Identities=16%  Similarity=0.129  Sum_probs=100.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND---------------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---------------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~  478 (536)
                      +++++|+.+|++|++++|++               ..+++|+|.++. ..|++++|+.+|++||+++|+++.+++++|.+
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            89999999999999999999               699999999887 69999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +... |++++|+.+|++|++++|+++.++.+++.++..+|+.+
T Consensus       240 ~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  281 (336)
T 1p5q_A          240 HLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  281 (336)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence            8875 69999999999999999999999999999999988754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.47  E-value=5e-13  Score=114.42  Aligned_cols=95  Identities=15%  Similarity=0.274  Sum_probs=84.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-------ESFSKYASFLWRVRNDL  486 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-------eAL~nLG~~L~e~~GD~  486 (536)
                      |+|++|+.+|++||+++|+++.+|.|+|.++. ..|++++|+++|++||+++|++.       .++.++|.++.. .|++
T Consensus        22 ~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~   99 (127)
T 4gcn_A           22 KDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK-QNDL   99 (127)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH-cCCH
Confidence            89999999999999999999999999999888 69999999999999999999874       588899988776 4699


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385          487 WAAEETFLEAISADPTNSYYAANYA  511 (536)
Q Consensus       487 eEAee~feKALeLDPdNpeal~NyA  511 (536)
                      ++|+++|++|++.+|+ ++....+.
T Consensus       100 ~~A~~~~~kal~~~~~-~~~~~~l~  123 (127)
T 4gcn_A          100 SLAVQWFHRSLSEFRD-PELVKKVK  123 (127)
T ss_dssp             HHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcC-HHHHHHHH
Confidence            9999999999999885 55544443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.47  E-value=2.4e-13  Score=123.35  Aligned_cols=105  Identities=11%  Similarity=0.119  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhcCCH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-------ESFSKYASFLWRVRNDL  486 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-------eAL~nLG~~L~e~~GD~  486 (536)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++       .++.++|.++... |++
T Consensus        56 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~  133 (228)
T 4i17_A           56 KKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA-GNI  133 (228)
T ss_dssp             TCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT-TCH
T ss_pred             hcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh-ccH
Confidence            89999999999999999999999999999888 69999999999999999999999       6799999988764 699


Q ss_pred             HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCC
Q 009385          487 WAAEETFLEAISADPT--NSYYAANYANFLWNTGGE  520 (536)
Q Consensus       487 eEAee~feKALeLDPd--Npeal~NyA~~L~elGr~  520 (536)
                      ++|+.+|++|++++|+  ++.++.++|.++...|+.
T Consensus       134 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          134 EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999  999999999999998875

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.46  E-value=7.8e-13  Score=109.87  Aligned_cols=101  Identities=11%  Similarity=0.058  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++++.++|+++.+++++|.++. ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+.+|
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~  100 (137)
T 3q49_B           23 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM-ESYDEAIANL  100 (137)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH-hhHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCC-----CHHHHHHHHHHHHH
Q 009385          494 LEAISADPT-----NSYYAANYANFLWN  516 (536)
Q Consensus       494 eKALeLDPd-----Npeal~NyA~~L~e  516 (536)
                      ++|++++|+     +..+...+..+...
T Consensus       101 ~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B          101 QRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            999999998     67776666655443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.45  E-value=5.5e-13  Score=128.35  Aligned_cols=109  Identities=19%  Similarity=0.208  Sum_probs=103.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .|++++|+.+|+++++++|+  ++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+
T Consensus       190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~  267 (365)
T 4eqf_A          190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG-DRSEEAV  267 (365)
T ss_dssp             CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHH
Confidence            38999999999999999999  9999999999887 689999999999999999999999999999988874 6999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .+|+++++++|+++.++.++|.++..+|+.+++
T Consensus       268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999999999999999997654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.44  E-value=3.2e-12  Score=105.12  Aligned_cols=103  Identities=16%  Similarity=0.128  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~e  487 (536)
                      +++++|+..|+++++.+|+++   .+++++|.+++ ..|++++|+.+|+++++.+|++   +.+++++|.++... |+++
T Consensus        16 ~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~-g~~~   93 (129)
T 2xev_A           16 GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE-GKNT   93 (129)
T ss_dssp             TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc-CCHH
Confidence            899999999999999999999   89999999888 6999999999999999999999   99999999988874 6999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          488 AAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       488 EAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      +|+.+|+++++..|+++.+......+-...+
T Consensus        94 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           94 EAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            9999999999999999987666655544333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.43  E-value=1e-12  Score=137.50  Aligned_cols=114  Identities=13%  Similarity=0.169  Sum_probs=102.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.+++++|.++... |++++|+++
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~   96 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRD   96 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH-TCHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            489999999999999999999999999999888 699999999999999999999999999999988875 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHH--HHHcCCCccccCCCC
Q 009385          493 FLEAISADPTNSYYAANYANF--LWNTGGEDTCFPLSS  528 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~--L~elGr~E~clpl~~  528 (536)
                      |++|++++|+++.++.+++.+  +...|+.+++....+
T Consensus        97 ~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           97 YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999988  888888777766655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=8.9e-13  Score=111.79  Aligned_cols=108  Identities=17%  Similarity=0.130  Sum_probs=102.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++.+|+++.++..+|.++... |++++|+++|
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~   99 (186)
T 3as5_A           22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV-QKYDLAVPLL   99 (186)
T ss_dssp             TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHH
Confidence            89999999999999999999999999999887 699999999999999999999999999999988775 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++++++|+++.++.++|.++...|+.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A  129 (186)
T 3as5_A          100 IKVAEANPINFNVRFRLGVALDNLGRFDEA  129 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence            999999999999999999999999987654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=2.4e-12  Score=115.22  Aligned_cols=110  Identities=15%  Similarity=0.114  Sum_probs=100.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++... |++++|+.+
T Consensus       104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~  181 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE-GMLDEALSQ  181 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            389999999999999999999999999998877 689999999999999999999999999999988775 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      |+++++.+|+++.++.++|.++...|+.+++.
T Consensus       182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  213 (243)
T 2q7f_A          182 FAAVTEQDPGHADAFYNAGVTYAYKENREKAL  213 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence            99999999999999999999999999876543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=2.5e-12  Score=115.09  Aligned_cols=109  Identities=15%  Similarity=0.196  Sum_probs=103.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++.+|++..++.++|.++. ..|++++|+++|+++++.+|+++.++..+|.++... |++++|+.+|
T Consensus        71 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~  148 (243)
T 2q7f_A           71 NELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL-EQPKLALPYL  148 (243)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT-SCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            89999999999999999999999999999887 699999999999999999999999999999988764 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      +++++++|+++.++.++|.++...|+.+++.
T Consensus       149 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          149 QRAVELNENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999986543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.42  E-value=2.9e-12  Score=116.28  Aligned_cols=109  Identities=18%  Similarity=0.263  Sum_probs=100.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA--VEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALe--LDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .+++++|+.+|+++++.+|++..++.++|.++. ..|++++|+++|+++++  .+|.++.++..+|.++... |++++|+
T Consensus        84 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~  161 (252)
T 2ho1_A           84 EMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM-KKPAQAK  161 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc-CCHHHHH
Confidence            389999999999999999999999999998887 68999999999999999  8899999999999988764 6999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .+|+++++++|+++.++..+|.++...|+.+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          162 EYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999987544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.4e-12  Score=117.12  Aligned_cols=108  Identities=15%  Similarity=0.063  Sum_probs=96.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+..|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus       119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~  196 (258)
T 3uq3_A          119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADC  196 (258)
T ss_dssp             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCHHHHHHHH
Confidence            55666666666666689999999999999887 689999999999999999999999999999988764 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++++++|+++.++.++|.++...|+.+++
T Consensus       197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          197 NKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999999999987544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.42  E-value=1.9e-12  Score=104.33  Aligned_cols=103  Identities=13%  Similarity=0.190  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-------AESFSKYASFLWRVRNDL  486 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-------aeAL~nLG~~L~e~~GD~  486 (536)
                      +++++|+.+|++++..+|+++.++.++|.++. ..|++++|+.+|++++.++|++       +.++.++|.++... |++
T Consensus        18 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~   95 (131)
T 1elr_A           18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE-EKY   95 (131)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT-TCH
T ss_pred             cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHh-ccH
Confidence            89999999999999999999999999999887 6899999999999999999988       99999999988874 699


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          487 WAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       487 eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      ++|+.+|+++++++| ++.....++.++...++
T Consensus        96 ~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           96 KDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999999 68888888888766554

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=5.2e-13  Score=121.70  Aligned_cols=107  Identities=16%  Similarity=0.143  Sum_probs=85.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++... |++++|+.+
T Consensus        56 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~  133 (275)
T 1xnf_A           56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-GRDKLAQDD  133 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh-ccHHHHHHH
Confidence            378888888888888888888888888888777 588888888888888888888888888888877764 688888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      |+++++++|+++.....++.. ...|+.++
T Consensus       134 ~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~  162 (275)
T 1xnf_A          134 LLAFYQDDPNDPFRSLWLYLA-EQKLDEKQ  162 (275)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHHHCHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHH-HHhcCHHH
Confidence            888888888888665555443 44566543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.41  E-value=2.3e-12  Score=122.75  Aligned_cols=110  Identities=20%  Similarity=0.197  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus       231 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~  308 (368)
T 1fch_A          231 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHF  308 (368)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence            89999999999999999999999999999887 699999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCCC-----------HHHHHHHHHHHHHcCCCccccC
Q 009385          494 LEAISADPTN-----------SYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       494 eKALeLDPdN-----------peal~NyA~~L~elGr~E~clp  525 (536)
                      +++++++|++           +.++.++|.++..+|+.+.+..
T Consensus       309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            9999999998           8999999999999999876543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.39  E-value=2.1e-12  Score=134.79  Aligned_cols=107  Identities=20%  Similarity=0.191  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++|++++|+++.++.++|.++. ..|++++|+++|+++++++|+++.+++++|.++... |++++|+++|
T Consensus        37 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~  114 (568)
T 2vsy_A           37 GDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA-GQAEAAAAAY  114 (568)
T ss_dssp             TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988774 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc---CCCcc
Q 009385          494 LEAISADPTNSYYAANYANFLWNT---GGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~el---Gr~E~  522 (536)
                      ++|++++|+++.++.++|.++..+   |+.++
T Consensus       115 ~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~  146 (568)
T 2vsy_A          115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDV  146 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhccccHHH
Confidence            999999999999999999999999   87653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=2.1e-12  Score=125.73  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|+++++++|+++.++.++|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|+.+|
T Consensus       251 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~  328 (388)
T 1w3b_A          251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLY  328 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            67777888888888888887877777777766 57788888888888888888888887777776654 45788888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +++++++|+++.++.++|.++...|+.++
T Consensus       329 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~  357 (388)
T 1w3b_A          329 RKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence            88888778777777778888777777644

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.39  E-value=5.2e-13  Score=145.10  Aligned_cols=107  Identities=13%  Similarity=-0.029  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+..|+++++++|+++.+|+++|.++. ..|++++|+++|++|++++|+++.+++++|.++... |++++ +++|
T Consensus       447 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~-g~~~~-~~~~  523 (681)
T 2pzi_A          447 GDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELA-GNTDE-HKFY  523 (681)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH-TCCCT-TCHH
T ss_pred             CCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CChHH-HHHH
Confidence            89999999999999999999999999999888 689999999999999999999999999999988775 69999 9999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|++++|+++.+++++|.++..+|+.+++
T Consensus       524 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A  553 (681)
T 2pzi_A          524 QTVWSTNDGVISAAFGLARARSAEGDRVGA  553 (681)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999987543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.39  E-value=1.1e-12  Score=136.94  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++++|++..+++++|.++. ..|++++|+++|+++++++|+++.++.++|.++... |++++|+++|
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAEL-GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ-QRHAEAAVLL   80 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence            68999999999999999999999999999888 689999999999999999999999999999988775 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|++++|+++.++.++|.++...|+.+++
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A  110 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAA  110 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999987654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.39  E-value=2.5e-12  Score=122.55  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=102.3

Q ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      +++++|+.+|+++++++|+  ++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~  272 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-CCHHHHHH
Confidence            7999999999999999999  8999999999888 699999999999999999999999999999988874 69999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +|+++++++|+++.++.++|.++...|+.+++
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999987654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.39  E-value=8.6e-13  Score=136.64  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=95.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND---------------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---------------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~  478 (536)
                      ++|++|+.+|++||+++|++               ..+|+|+|.+++ ..|++++|+.+|++||+++|+++.+++++|.+
T Consensus       282 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          282 GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEA  360 (457)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            89999999999999999999               799999999888 69999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      +... |++++|+.+|++|++++|+++.++.+++.++..+|+.
T Consensus       361 ~~~~-g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          361 QLLM-NEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHT-TCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             HHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            8875 6999999999999999999999999999999888854

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.39  E-value=2.1e-12  Score=107.27  Aligned_cols=91  Identities=16%  Similarity=0.086  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385          431 PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANY  510 (536)
Q Consensus       431 Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~Ny  510 (536)
                      |.++..+.++|..++ ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|++|++++|+++.++.++
T Consensus         1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (126)
T 3upv_A            1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKDPNFVRAYIRK   78 (126)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            456788999999888 699999999999999999999999999999998875 699999999999999999999999999


Q ss_pred             HHHHHHcCCCccc
Q 009385          511 ANFLWNTGGEDTC  523 (536)
Q Consensus       511 A~~L~elGr~E~c  523 (536)
                      |.++..+|+.+++
T Consensus        79 g~~~~~~~~~~~A   91 (126)
T 3upv_A           79 ATAQIAVKEYASA   91 (126)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHHhCHHHH
Confidence            9999999997654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.38  E-value=4e-12  Score=104.57  Aligned_cols=100  Identities=15%  Similarity=0.145  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009385          418 RTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAI  497 (536)
Q Consensus       418 eAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKAL  497 (536)
                      +|+..|+++++.+|+++.+++++|.+++ ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+.+|++|+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ-GDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence            5889999999999999999999999887 699999999999999999999999999999988875 69999999999999


Q ss_pred             HhCCC--CHHHHHHHHHHHHHcCC
Q 009385          498 SADPT--NSYYAANYANFLWNTGG  519 (536)
Q Consensus       498 eLDPd--Npeal~NyA~~L~elGr  519 (536)
                      +++|+  +......+...+..+|+
T Consensus        81 ~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           81 AAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HhccccccHHHHHHHHHHHHHhcc
Confidence            99984  55666777777766654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.38  E-value=2.4e-12  Score=114.64  Aligned_cols=104  Identities=14%  Similarity=0.091  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++++  +| ++.+++++|.++. ..|++++|+++|+++++++|+++.+++++|.++... |++++|+.+|
T Consensus        20 ~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~   94 (213)
T 1hh8_A           20 KDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT-EKYDLAIKDL   94 (213)
T ss_dssp             TCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-ccHHHHHHHH
Confidence            89999999999996  45 7899999999887 699999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCCCH----------------HHHHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNS----------------YYAANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNp----------------eal~NyA~~L~elGr~E~  522 (536)
                      ++++++.|++.                .++.++|.++..+|+.++
T Consensus        95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  139 (213)
T 1hh8_A           95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK  139 (213)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHH
Confidence            99999998877                899999999999998653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.38  E-value=3.4e-13  Score=119.55  Aligned_cols=108  Identities=12%  Similarity=0.031  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|++++..+| ++..+..++.+.....++..+|+.+|+++++++|+++.+++++|.++... |++++|+.+|
T Consensus        54 g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~-g~~~~A~~~~  131 (176)
T 2r5s_A           54 KQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQV-GRDEEALELL  131 (176)
T ss_dssp             TCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-ccHHHHHHHH
Confidence            778888888888888888 77666555544332223344578888888888888888888888877664 6888888888


Q ss_pred             HHHHHhCCCC--HHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTN--SYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdN--peal~NyA~~L~elGr~E~c  523 (536)
                      +++++++|++  +.++.+++.++..+|+.+++
T Consensus       132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A          132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            8888888875  55788888888888877654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.38  E-value=6.1e-12  Score=122.38  Aligned_cols=110  Identities=15%  Similarity=0.192  Sum_probs=90.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+++++++.+|+++.+++++|.++. ..|++++|+++|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus        47 ~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~  124 (388)
T 1w3b_A           47 RRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK-ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA-GDMEGAVQAY  124 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-SCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            78888888888888888888888888888777 578888888888888888888888888888877764 5888888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      +++++++|+++.++.++|.++...|+.+++..
T Consensus       125 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  156 (388)
T 1w3b_A          125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKA  156 (388)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence            88888888888888888888888888766543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.38  E-value=4.3e-12  Score=116.21  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e  481 (536)
                      |++++|+.+|+++++++|+++.+++++|.++. ..|++++|+.+|+++++++|+++.+++++|.+++.
T Consensus        68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL  134 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999888 69999999999999999999999999999987754

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.38  E-value=4.5e-12  Score=111.39  Aligned_cols=112  Identities=15%  Similarity=0.098  Sum_probs=100.9

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA-HDYDRAEEYFKRAIA--VEPPDAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~-GD~deAEe~FeKALe--LDPddaeAL~nLG~~L~e~~GD~eE  488 (536)
                      ..+++++|+.+|+++++.+|++..++.++|.++. .. |++++|+.+|+++++  .+|++..++.++|.++... |++++
T Consensus        54 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~  131 (225)
T 2vq2_A           54 YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGL  131 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT-TCHHH
T ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc-CCHHH
Confidence            3489999999999999999999999999998887 68 999999999999999  7778889999999988764 69999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          489 AEETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       489 Aee~feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      |+.+|+++++.+|+++.++.++|.++...|+.+++..
T Consensus       132 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A          132 AEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999876543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.37  E-value=1.3e-12  Score=121.44  Aligned_cols=95  Identities=13%  Similarity=0.033  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCHHHH--
Q 009385          414 ADYFRTELLYQTGLAQEPN-------DPL-----LLANYAQFLYIVAHDYDRAEEYFKRAIAV-------EPPDAESF--  472 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd-------n~e-----AL~NLA~lL~e~~GD~deAEe~FeKALeL-------DPddaeAL--  472 (536)
                      |+|++|+..|++||+++|+       +..     +|.|+|.++. ..|++++|+.+|++||++       +|+++.+|  
T Consensus        25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~  103 (159)
T 2hr2_A           25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  103 (159)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHH
Confidence            8999999999999999999       544     9999999888 699999999999999999       99999999  


Q ss_pred             --HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385          473 --SKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANY  510 (536)
Q Consensus       473 --~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~Ny  510 (536)
                        ++.|.+|... |++++|+.+|++|++++|++..+...+
T Consensus       104 ~~~~rG~aL~~l-gr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A          104 AVYSRALALDGL-GRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             HHHhHHHHHHHC-CCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence              9999998875 699999999999999999987654333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=4.4e-12  Score=111.44  Aligned_cols=110  Identities=16%  Similarity=0.080  Sum_probs=97.4

Q ss_pred             cc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 009385          412 DY-ADYFRTELLYQTGLA--QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       412 d~-gdyeeAee~YqKALe--LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eE  488 (536)
                      .. +++++|+.+|+++++  .+|++..++.++|.++. ..|++++|+.+|+++++.+|+++.++..+|.++... |++++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~  165 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA-KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA-GQLGD  165 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH-TCHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc-CCHHH
Confidence            55 899999999999999  77777899999998877 689999999999999999999999999999988775 69999


Q ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCccc
Q 009385          489 AEETFLEAISADP-TNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       489 Aee~feKALeLDP-dNpeal~NyA~~L~elGr~E~c  523 (536)
                      |+.+|+++++++| +++.++..++.++...|+.+.+
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  201 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA  201 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence            9999999999999 9999988888888888887654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.36  E-value=6.1e-12  Score=104.44  Aligned_cols=94  Identities=16%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009385          428 AQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       428 eLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal  507 (536)
                      ..+|.++..++++|..++ ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|++|++++|+++.++
T Consensus         3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCchhHHHH
Confidence            467889999999999888 699999999999999999999999999999988875 699999999999999999999999


Q ss_pred             HHHHHHHHHcCCCccc
Q 009385          508 ANYANFLWNTGGEDTC  523 (536)
Q Consensus       508 ~NyA~~L~elGr~E~c  523 (536)
                      +++|.++..+|+.+++
T Consensus        81 ~~l~~~~~~~~~~~~A   96 (137)
T 3q49_B           81 FFLGQCQLEMESYDEA   96 (137)
T ss_dssp             HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhhHHHH
Confidence            9999999999987654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.36  E-value=6e-12  Score=116.88  Aligned_cols=109  Identities=24%  Similarity=0.312  Sum_probs=102.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+.+|
T Consensus       152 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  229 (327)
T 3cv0_A          152 NEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALDAY  229 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            79999999999999999999999999999887 69999999999999999999999999999998887 46999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      +++++++|+++.++.++|.++...|+.+++.
T Consensus       230 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          230 NRALDINPGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            9999999999999999999999999876543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.36  E-value=1.2e-12  Score=135.80  Aligned_cols=109  Identities=11%  Similarity=-0.027  Sum_probs=102.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHh
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA--------HDYDRAEEYFKRAIAVEP---PDAESFSKYASFLWRV  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~--------GD~deAEe~FeKALeLDP---ddaeAL~nLG~~L~e~  482 (536)
                      +++++|+.+|++|++++|+++.+|+++|.++. ..        |++++|+.+|++|++++|   +++.+++++|.++...
T Consensus       193 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~  271 (474)
T 4abn_A          193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYE  271 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHc
Confidence            79999999999999999999999999999887 57        999999999999999999   9999999999988875


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          483 RNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       483 ~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                       |++++|+++|++|++++|+++.++.+++.++..+|+.++++
T Consensus       272 -g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          272 -ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             -TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             69999999999999999999999999999999999776544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.36  E-value=4.6e-12  Score=122.29  Aligned_cols=108  Identities=18%  Similarity=0.141  Sum_probs=87.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHH----------------------------------HH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEY----------------------------------FK  459 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~----------------------------------Fe  459 (536)
                      |++++|+..|+++++++|+++.+++++|.++. ..|++++|+.+                                  |+
T Consensus       131 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~  209 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ  209 (287)
T ss_dssp             TCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence            89999999999999999999999999998877 57888876644                                  55


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCccc
Q 009385          460 RAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN--SYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       460 KALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN--peal~NyA~~L~elGr~E~c  523 (536)
                      ++++.+|+++++++++|.++.. .|++++|++.|+++++.+|++  +.++.+++.++..+|+.+.+
T Consensus       210 ~al~~~P~~~~~~~~la~~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          210 QQVAENPEDAALATQLALQLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhcCCccHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            5577788888888888887765 468888888888888888887  77788888888888876543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=4e-12  Score=138.20  Aligned_cols=108  Identities=13%  Similarity=-0.078  Sum_probs=102.3

Q ss_pred             cCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 009385          413 YADYFRTELLYQTGL--------AQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN  484 (536)
Q Consensus       413 ~gdyeeAee~YqKAL--------eLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G  484 (536)
                      .+++++|++.|++++        +.+|++..+++++|.++. ..|++++|+..|+++++++|+++.+++++|.++... |
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g  481 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT-G  481 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-T
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc-C
Confidence            389999999999999        999999999999999888 689999999999999999999999999999988875 6


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          485 DLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       485 D~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      ++++|+++|++|++++|+++.++.++|.++..+|++++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE  519 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence            99999999999999999999999999999999999876

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.36  E-value=7.3e-12  Score=116.29  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=103.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++... |++++|+.+|
T Consensus       186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~  263 (327)
T 3cv0_A          186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM-SQYDLAAKQL  263 (327)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988764 7999999999


Q ss_pred             HHHHHhCCC------------CHHHHHHHHHHHHHcCCCccccC
Q 009385          494 LEAISADPT------------NSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       494 eKALeLDPd------------Npeal~NyA~~L~elGr~E~clp  525 (536)
                      +++++++|+            ++.++.+++.++..+|+.+.+..
T Consensus       264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence            999999999            79999999999999998765443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=1.6e-12  Score=134.72  Aligned_cols=108  Identities=15%  Similarity=0.078  Sum_probs=77.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA---------HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV--  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~---------GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~--  482 (536)
                      |++++|+.+|++|++++|+ ..++.++|.++. ..         |++++|+++|++|++++|+++.+++++|.++...  
T Consensus       151 g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          151 GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             TCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            6777777777777777776 577777776665 46         7777777777777777777777777777766653  


Q ss_pred             ---c--CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCCccc
Q 009385          483 ---R--NDLWAAEETFLEAISADP---TNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       483 ---~--GD~eEAee~feKALeLDP---dNpeal~NyA~~L~elGr~E~c  523 (536)
                         .  |++++|+.+|++|++++|   +++.++.++|.++...|+++++
T Consensus       229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A  277 (474)
T 4abn_A          229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEA  277 (474)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence               0  367777777777777777   7777777777777777776543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.35  E-value=5.9e-12  Score=115.25  Aligned_cols=104  Identities=12%  Similarity=0.152  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|..++.. +++++|+.+|
T Consensus        88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~  165 (272)
T 3u4t_A           88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN-KEYVKADSSF  165 (272)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999434443 5999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      +++++++|+++.++.++|.++..+|+
T Consensus       166 ~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          166 VKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHhCccchHHHHHHHHHHHHcCc
Confidence            99999999999999999999999987

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=3.8e-12  Score=115.57  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++..+|.++.. .|++++|+++|
T Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  128 (252)
T 2ho1_A           51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRL  128 (252)
T ss_dssp             TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHHHHHHHHH
Confidence            78999999999999999999999999999887 69999999999999999999999999999998876 46999999999


Q ss_pred             HHHHH--hCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          494 LEAIS--ADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALe--LDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      +++++  .+|.++.++.++|.++...|+.+++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  161 (252)
T 2ho1_A          129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAK  161 (252)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            99999  88999999999999999999876543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.35  E-value=6e-12  Score=117.04  Aligned_cols=108  Identities=14%  Similarity=0.055  Sum_probs=95.1

Q ss_pred             C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 A-DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 g-dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      + ++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|++..++..+|.++... |++++|+.+
T Consensus       104 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~  181 (330)
T 3hym_B          104 GHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT-NNSKLAERF  181 (330)
T ss_dssp             CSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-hhHHHHHHH
Confidence            6 8899999999999999999999999998877 589999999999999999999999999999887764 689999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |+++++++|+++.++.++|.++...|+.+++
T Consensus       182 ~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A  212 (330)
T 3hym_B          182 FSQALSIAPEDPFVMHEVGVVAFQNGEWKTA  212 (330)
T ss_dssp             HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHcccHHHH
Confidence            9999999999999999999999999986543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.35  E-value=5.1e-12  Score=99.49  Aligned_cols=89  Identities=16%  Similarity=0.184  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhc-CCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP--DAESFSKYASFLWRVR-NDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd--daeAL~nLG~~L~e~~-GD~eEAe  490 (536)
                      +++++|+.+|+++++++|++..++.++|.++. ..|++++|+.+|+++++++|+  +..++.++|.++.. . |++++|+
T Consensus        20 ~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~A~   97 (112)
T 2kck_A           20 GNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY-IEGKEVEAE   97 (112)
T ss_dssp             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT-CSSCSHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH-HhCCHHHHH
Confidence            78999999999999999999999999998877 589999999999999999999  99999999987765 5 6899999


Q ss_pred             HHHHHHHHhCCCCH
Q 009385          491 ETFLEAISADPTNS  504 (536)
Q Consensus       491 e~feKALeLDPdNp  504 (536)
                      ++|++++..+|.++
T Consensus        98 ~~~~~~~~~~p~~~  111 (112)
T 2kck_A           98 IAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHGGGCCCCC
T ss_pred             HHHHHHhhcccCCC
Confidence            99999999988763

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.35  E-value=8.9e-12  Score=113.56  Aligned_cols=88  Identities=13%  Similarity=0.028  Sum_probs=41.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|++...+..++.. .. .|++++|+.+|
T Consensus        91 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~~A~~~~  167 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQ-KLDEKQAKEVL  167 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HH-HHCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCccccHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HH-hcCHHHHHHHH
Confidence            45555555555555555555555555554444 34555555555555555555554444433322 11 13455555555


Q ss_pred             HHHHHhCCCCH
Q 009385          494 LEAISADPTNS  504 (536)
Q Consensus       494 eKALeLDPdNp  504 (536)
                      ++++...|++.
T Consensus       168 ~~~~~~~~~~~  178 (275)
T 1xnf_A          168 KQHFEKSDKEQ  178 (275)
T ss_dssp             HHHHHHSCCCS
T ss_pred             HHHHhcCCcch
Confidence            55555544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.35  E-value=6.9e-12  Score=120.70  Aligned_cols=108  Identities=17%  Similarity=0.125  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------------------------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP---------------------------  466 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP---------------------------  466 (536)
                      |++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|                           
T Consensus       113 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g  191 (365)
T 4eqf_A          113 ENEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS  191 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence            78888999999999999988888888888776 57887777777777666554                           


Q ss_pred             -----------------C--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          467 -----------------P--DAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       467 -----------------d--daeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                                       +  ++.++.++|.++... |++++|+.+|+++++++|+++.++.++|.++...|+.+++
T Consensus       192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  266 (365)
T 4eqf_A          192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS-GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA  266 (365)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence                             4  788899999888764 6999999999999999999999999999999999987554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.35  E-value=4e-12  Score=110.81  Aligned_cols=92  Identities=14%  Similarity=0.107  Sum_probs=85.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385          430 EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN  509 (536)
Q Consensus       430 dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~N  509 (536)
                      ++.++..++++|.+++ ..|++++|+.+|+++++++|+++.+++++|.++... |++++|+.+|++|++++|+++.++++
T Consensus         7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS-GQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5667889999999888 699999999999999999999999999999998875 69999999999999999999999999


Q ss_pred             HHHHHHHcCCCccc
Q 009385          510 YANFLWNTGGEDTC  523 (536)
Q Consensus       510 yA~~L~elGr~E~c  523 (536)
                      +|.++..+|+++++
T Consensus        85 lg~~~~~~g~~~~A   98 (164)
T 3sz7_A           85 LGLARFDMADYKGA   98 (164)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHccCHHHH
Confidence            99999999987644

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.35  E-value=5.2e-12  Score=117.49  Aligned_cols=108  Identities=16%  Similarity=0.112  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH------
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWR------  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e------  481 (536)
                      |++++|+..|+++++.+|++   +.+++++|.+++ ..|++++|+.+|+++++++|++   +.+++.+|.++..      
T Consensus        29 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           29 GKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            89999999999999999999   999999999988 6999999999999999998865   6789999998876      


Q ss_pred             --hcCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCccc
Q 009385          482 --VRNDLWAAEETFLEAISADPTNSYYA-----------------ANYANFLWNTGGEDTC  523 (536)
Q Consensus       482 --~~GD~eEAee~feKALeLDPdNpeal-----------------~NyA~~L~elGr~E~c  523 (536)
                        . |++++|+.+|+++++.+|+++.+.                 +++|.++...|+++++
T Consensus       108 ~~~-~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  167 (261)
T 3qky_A          108 LDQ-TDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA  167 (261)
T ss_dssp             SCC-HHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccc-hhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence              5 599999999999999999997765                 8889999999997654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.35  E-value=2.8e-12  Score=117.38  Aligned_cols=105  Identities=17%  Similarity=0.250  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----ESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----eAL~nLG~~L~e~~GD~eEA  489 (536)
                      +++++|+.+|+++++.+|+++.++.++|.+++ ..|++++|+.+|+++++ .|+++    .++..+|.++... |++++|
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~-~~~~~A   93 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKK-GQDSLA   93 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHc-ccHHHH
Confidence            56666666666666666666666666666555 46666666666666666 33332    2366666655543 466666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +.+|+++++++|+++.++.++|.++...|+.+
T Consensus        94 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  125 (272)
T 3u4t_A           94 IQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP  125 (272)
T ss_dssp             HHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence            66666666666666666666666666666543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.34  E-value=2.3e-12  Score=130.88  Aligned_cols=106  Identities=12%  Similarity=0.104  Sum_probs=99.8

Q ss_pred             CCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLA----------------QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALe----------------LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      ++|++|+.+|++||+                ++|.+..+|+|+|.+++ ..|++++|+++|++||+++|+++.+++++|.
T Consensus       237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~  315 (370)
T 1ihg_A          237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  315 (370)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            899999999999999                88999999999999888 6999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          478 FLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ++... |++++|+.+|++|++++|+++.++..++.++..+++.+
T Consensus       316 ~~~~~-g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~  358 (370)
T 1ihg_A          316 GWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  358 (370)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            88875 69999999999999999999999999999998887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.34  E-value=4.2e-12  Score=113.91  Aligned_cols=109  Identities=17%  Similarity=0.146  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----------------------
Q 009385          414 ADYFRTELLYQTGLAQEPND-------PLLLANYAQFLYIVAHDYDRAEEYFKRAIA-----------------------  463 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn-------~eAL~NLA~lL~e~~GD~deAEe~FeKALe-----------------------  463 (536)
                      +++++|+.+|+++++++|++       +.++.++|.++. ..|++++|+.+|+++++                       
T Consensus        52 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~  130 (258)
T 3uq3_A           52 GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEA  130 (258)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHH
Confidence            89999999999999999988       799999999887 69999999999999999                       


Q ss_pred             ---hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          464 ---VEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       464 ---LDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                         .+|+++.++..+|.++... |++++|+.+|+++++++|+++.++.++|.++...|+.+++.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  193 (258)
T 3uq3_A          131 EAYVNPEKAEEARLEGKEYFTK-SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI  193 (258)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCcchHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHH
Confidence               7788889999999988875 69999999999999999999999999999999999876543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.33  E-value=3e-12  Score=100.79  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=86.5

Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHH
Q 009385          429 QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPT--NSYY  506 (536)
Q Consensus       429 LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd--Npea  506 (536)
                      ++|+++.++.++|.+++ ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|+++++++|+  ++.+
T Consensus         1 l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNL-ERYEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             CCCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             CCCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCcccchHHH
Confidence            47999999999999887 689999999999999999999999999999988875 6999999999999999999  9999


Q ss_pred             HHHHHHHHHHc-CCCccc
Q 009385          507 AANYANFLWNT-GGEDTC  523 (536)
Q Consensus       507 l~NyA~~L~el-Gr~E~c  523 (536)
                      +.++|.++... |+.+++
T Consensus        79 ~~~l~~~~~~~~~~~~~A   96 (112)
T 2kck_A           79 WAAKADALRYIEGKEVEA   96 (112)
T ss_dssp             HHHHHHHHTTCSSCSHHH
T ss_pred             HHHHHHHHHHHhCCHHHH
Confidence            99999999999 987644

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.33  E-value=9.4e-12  Score=115.69  Aligned_cols=108  Identities=10%  Similarity=0.031  Sum_probs=101.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      +++++|+.+|+++++.+|+++.++..+|.++. ..| ++++|+.+|+++++++|+++.++..+|.++... |++++|+.+
T Consensus        70 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~  147 (330)
T 3hym_B           70 NKANELFYLSHKLVDLYPSNPVSWFAVGCYYL-MVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVE-SEHDQAMAA  147 (330)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH-HSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHH-TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc-cCHHHHHHH
Confidence            89999999999999999999999999998887 688 999999999999999999999999999988875 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |+++++++|++...+.++|.++...|+.+++
T Consensus       148 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B          148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence            9999999999999999999999999987543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.33  E-value=9.8e-12  Score=116.23  Aligned_cols=109  Identities=11%  Similarity=0.130  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++... |++++|+.+|
T Consensus        17 g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~   94 (359)
T 3ieg_A           17 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ-GKLDEAEDDF   94 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc-CChHHHHHHH
Confidence            89999999999999999999999999999888 689999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCC---CCHHHHHHH------------HHHHHHcCCCcccc
Q 009385          494 LEAISADP---TNSYYAANY------------ANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALeLDP---dNpeal~Ny------------A~~L~elGr~E~cl  524 (536)
                      +++++++|   +++.++..+            |.++...|+.+++.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence            99999999   999888877            68889999876543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.33  E-value=1.4e-11  Score=95.25  Aligned_cols=86  Identities=27%  Similarity=0.407  Sum_probs=79.2

Q ss_pred             CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385          431 PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANY  510 (536)
Q Consensus       431 Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~Ny  510 (536)
                      |+++.+++++|.++. ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|+++++++|+++.++.++
T Consensus         6 ~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l   83 (91)
T 1na3_A            6 GNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAKQNL   83 (91)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            346789999998887 699999999999999999999999999999988874 699999999999999999999999999


Q ss_pred             HHHHHHcC
Q 009385          511 ANFLWNTG  518 (536)
Q Consensus       511 A~~L~elG  518 (536)
                      |.++...|
T Consensus        84 ~~~~~~~g   91 (91)
T 1na3_A           84 GNAKQKQG   91 (91)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.31  E-value=1.8e-11  Score=107.02  Aligned_cols=93  Identities=18%  Similarity=0.231  Sum_probs=86.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDY--DRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~--deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      +++++|+.+|+++++++|+++.++.++|.+++...|++  ++|+.+|+++++++|+++.++.++|.++... |++++|+.
T Consensus        58 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~  136 (177)
T 2e2e_A           58 NDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ-ANYAQAIE  136 (177)
T ss_dssp             TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-ccHHHHHH
Confidence            89999999999999999999999999999844368998  9999999999999999999999999988875 79999999


Q ss_pred             HHHHHHHhCCCCHHHH
Q 009385          492 TFLEAISADPTNSYYA  507 (536)
Q Consensus       492 ~feKALeLDPdNpeal  507 (536)
                      +|+++++++|+++...
T Consensus       137 ~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          137 LWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHTCCTTSCHH
T ss_pred             HHHHHHhhCCCCccHH
Confidence            9999999999987543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.30  E-value=2.1e-11  Score=97.38  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHH
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN------SYY  506 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN------pea  506 (536)
                      ++.++.++|..++ ..|++++|+++|+++++++|+++.++.++|.++... |++++|+++|++|++++|++      +.+
T Consensus         3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKL-GEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            4678999999888 689999999999999999999999999999988875 69999999999999999999      889


Q ss_pred             HHHHHHHHHHcCCCccccCC
Q 009385          507 AANYANFLWNTGGEDTCFPL  526 (536)
Q Consensus       507 l~NyA~~L~elGr~E~clpl  526 (536)
                      +.++|.++..+|+.+.+...
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhH
Confidence            99999999999987665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.30  E-value=2.5e-11  Score=118.15  Aligned_cols=105  Identities=14%  Similarity=0.002  Sum_probs=49.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQ--FLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~--lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      |++++|+..|+++++.+|++.......+.  ++. ..|++++|+.+|+++++.+|+++.+++++|.++... |++++|+.
T Consensus       144 g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~-~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~eA~~  221 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQDEDATLTQLATAWVSLAA-GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ-GRWEAAEG  221 (291)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHH
Confidence            45555555555555555554432222111  111 124455555555555555555555555555444432 35555555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      +|++|++++|+++.++.|+|.++...|+.
T Consensus       222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~  250 (291)
T 3mkr_A          222 VLQEALDKDSGHPETLINLVVLSQHLGKP  250 (291)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Confidence            55555555555555555555555555543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.29  E-value=1.1e-11  Score=119.49  Aligned_cols=106  Identities=19%  Similarity=0.217  Sum_probs=58.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL-LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e-AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      |++++|...|+++|+++|+++. +|.+||.++. ..|++++|..+|++|++.+|.+..++..++.+.+...|++++|+.+
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~  191 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4555555555555555555554 5555555544 3555555555555555555555555554443332223455555555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      |++|++++|+++.++.+|+.++...|+.
T Consensus       192 ~~~al~~~p~~~~~~~~~~~~~~~~g~~  219 (308)
T 2ond_A          192 FELGLKKYGDIPEYVLAYIDYLSHLNED  219 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence            5555555555555555555555555554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.29  E-value=3.5e-11  Score=117.09  Aligned_cols=94  Identities=11%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+++|+++|+++|+|+++++++|.++...++..++|.+++
T Consensus       180 ~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHM-AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             THHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            79999999999999999999999999998877 69999999999999999999999999999998887653334578999


Q ss_pred             HHHHHhCCCCHHHHH
Q 009385          494 LEAISADPTNSYYAA  508 (536)
Q Consensus       494 eKALeLDPdNpeal~  508 (536)
                      +++++++|+++.+..
T Consensus       259 ~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          259 SQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHHCTTCHHHHH
T ss_pred             HHHHHhCCCChHHHH
Confidence            999999999998754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.27  E-value=1.3e-11  Score=105.57  Aligned_cols=91  Identities=10%  Similarity=0.190  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-------
Q 009385          432 NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS-------  504 (536)
Q Consensus       432 dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp-------  504 (536)
                      +.+.++.++|..++ ..|++++|+.+|++||+++|+++.++.++|.++... |++++|+++|++|++++|++.       
T Consensus         6 d~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            6 DAAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            34567889999998 699999999999999999999999999999998875 699999999999999999874       


Q ss_pred             HHHHHHHHHHHHcCCCcccc
Q 009385          505 YYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       505 eal~NyA~~L~elGr~E~cl  524 (536)
                      .++.++|.++..+|+++++.
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~  103 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAV  103 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHH
Confidence            46888999999999876543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.27  E-value=1.1e-12  Score=130.11  Aligned_cols=108  Identities=10%  Similarity=0.099  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---------------AESFSKYASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---------------aeAL~nLG~~  478 (536)
                      .++++|+.+|++++..+|+++.++.++|.+++ ..|++++|+.+|++|++++|++               +.+++++|.+
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            57788999999999999999999999999988 6999999999999999999999               7999999998


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +... |++++|+.+|++|++++|+++.+++++|.+|..+|+++++
T Consensus       206 ~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  249 (336)
T 1p5q_A          206 HLKL-QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA  249 (336)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            8875 6999999999999999999999999999999999997654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.27  E-value=3.2e-11  Score=112.75  Aligned_cols=105  Identities=15%  Similarity=0.054  Sum_probs=52.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP---PDAESFSKY------------ASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP---ddaeAL~nL------------G~~  478 (536)
                      |++++|+.+|+++++++|++..++..+|.++. ..|++++|+.+|+++++++|   ++..++..+            |.+
T Consensus        51 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  129 (359)
T 3ieg_A           51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD  129 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555555554444 34555555555555555555   444444444            233


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      +.. .|++++|+.+|+++++.+|+++.++.++|.++...|+.
T Consensus       130 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (359)
T 3ieg_A          130 AFD-GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEP  170 (359)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCH
Confidence            332 23455555555555555555555555555555555543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.26  E-value=1.2e-11  Score=109.63  Aligned_cols=108  Identities=14%  Similarity=0.045  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+..|+++++++|+++.+++++|.++. ..|++++|+.+|+++++.+| ++..+..++.+.....++..+|+.+|
T Consensus        20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~   97 (176)
T 2r5s_A           20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRL   97 (176)
T ss_dssp             TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHH
Confidence            89999999999999999999999999999887 69999999999999999999 98887777755433222445689999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|++++|+++.+++++|.++...|+.+++
T Consensus        98 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A  127 (176)
T 2r5s_A           98 EQELAANPDNFELACELAVQYNQVGRDEEA  127 (176)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcccHHHH
Confidence            999999999999999999999999987643

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.26  E-value=8e-11  Score=104.74  Aligned_cols=104  Identities=14%  Similarity=0.077  Sum_probs=91.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----------------ESFSKYA  476 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----------------eAL~nLG  476 (536)
                      .|++++|+.+|+++++++|+++.+++++|.++. ..|++++|+++|++++++.|++.                .+++++|
T Consensus        50 ~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  128 (213)
T 1hh8_A           50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA  128 (213)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHH
Confidence            389999999999999999999999999999888 69999999999999999888877                9999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          477 SFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       477 ~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      .++... |++++|+.+|++|++++|++.......+.......
T Consensus       129 ~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~  169 (213)
T 1hh8_A          129 FMYAKK-EEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ  169 (213)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTT
T ss_pred             HHHHHc-cCHHHHHHHHHHHHHcCcccccchHHHHHHHHHhc
Confidence            988875 69999999999999999987665555554444433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.26  E-value=1.7e-11  Score=118.09  Aligned_cols=93  Identities=18%  Similarity=0.280  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 009385          417 FRTELLYQTGLA-QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE-SFSKYASFLWRVRNDLWAAEETFL  494 (536)
Q Consensus       417 eeAee~YqKALe-LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae-AL~nLG~~L~e~~GD~eEAee~fe  494 (536)
                      ++|...|++|++ ++|++..+|.+||.++. ..|++++|.+.|+++++++|+++. +|.++|.++... |++++|+.+|+
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-EGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence            444444555554 34444444444444433 344444555555555544444443 444444444332 24445555555


Q ss_pred             HHHHhCCCCHHHHHHHH
Q 009385          495 EAISADPTNSYYAANYA  511 (536)
Q Consensus       495 KALeLDPdNpeal~NyA  511 (536)
                      +|++++|.+..++..++
T Consensus       159 ~a~~~~p~~~~~~~~~a  175 (308)
T 2ond_A          159 KAREDARTRHHVYVTAA  175 (308)
T ss_dssp             HHHTSTTCCTHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHH
Confidence            55544444444433333

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.25  E-value=3.7e-11  Score=120.40  Aligned_cols=109  Identities=21%  Similarity=0.316  Sum_probs=101.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++... |++++|+.+
T Consensus       289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~  366 (537)
T 3fp2_A          289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ-GKFTESEAF  366 (537)
T ss_dssp             SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            389999999999999999999999999999887 699999999999999999999999999999988764 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |+++++++|+++.++.++|.++...|+.+++
T Consensus       367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            9999999999999999999999999987654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.25  E-value=8.1e-12  Score=120.46  Aligned_cols=89  Identities=12%  Similarity=0.112  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|++|++++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.+++++|.++... |++++|+.+|
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~   95 (281)
T 2c2l_A           18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM-ESYDEAIANL   95 (281)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCCCH
Q 009385          494 LEAISADPTNS  504 (536)
Q Consensus       494 eKALeLDPdNp  504 (536)
                      ++|++++|+++
T Consensus        96 ~~al~l~p~~~  106 (281)
T 2c2l_A           96 QRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHhCccch
Confidence            99999999763

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.25  E-value=5.9e-12  Score=125.25  Aligned_cols=102  Identities=14%  Similarity=0.076  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP-----------------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA  476 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~-----------------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG  476 (536)
                      ++|++|+.+|++|+.++|++.                 .+++|+|.++. ..|++++|+.+|++||+++|+++.+++++|
T Consensus       193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  271 (338)
T 2if4_A          193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEEEKNPKALFRRG  271 (338)
T ss_dssp             SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            899999999999999999988                 48999998887 699999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          477 SFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       477 ~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~el  517 (536)
                      .++.. .|++++|+.+|++|++++|+++.++.+++.+....
T Consensus       272 ~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          272 KAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHT-TTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            98876 47999999999999999999999999999885443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.25  E-value=2.1e-11  Score=103.64  Aligned_cols=86  Identities=14%  Similarity=-0.017  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      .++++|..+. ..|++++|+.+|+++++++|+++.+++.+|.++... |++++|+.+|++|++++|+++.++.++|.++.
T Consensus        19 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            4677888877 689999999999999999999999999999988864 79999999999999999999999999999999


Q ss_pred             HcCCCccc
Q 009385          516 NTGGEDTC  523 (536)
Q Consensus       516 elGr~E~c  523 (536)
                      ..|+.+++
T Consensus        97 ~~g~~~~A  104 (121)
T 1hxi_A           97 NEHNANAA  104 (121)
T ss_dssp             HHHHHHHH
T ss_pred             HcCCHHHH
Confidence            99987543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.23  E-value=3.4e-11  Score=97.88  Aligned_cols=92  Identities=22%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 009385          430 EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN  509 (536)
Q Consensus       430 dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~N  509 (536)
                      .|.+..+++++|..++ ..|++++|+++|+++++.+|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++.+
T Consensus        12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            5778899999999888 69999999999999999999999999999998876 479999999999999999999999999


Q ss_pred             HHHHHHHcCCCccc
Q 009385          510 YANFLWNTGGEDTC  523 (536)
Q Consensus       510 yA~~L~elGr~E~c  523 (536)
                      +|.++...|+.+++
T Consensus        90 la~~~~~~~~~~~A  103 (133)
T 2lni_A           90 KAAALEAMKDYTKA  103 (133)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhhHHHH
Confidence            99999999987654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.23  E-value=7e-11  Score=116.00  Aligned_cols=108  Identities=11%  Similarity=0.152  Sum_probs=98.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|+++++++|+++.++..+|.++... |++++|+.+|
T Consensus        40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~  117 (450)
T 2y4t_A           40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ-GKLDEAEDDF  117 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988874 6999999999


Q ss_pred             HHHHHhCCCCH---HHHHHH------------HHHHHHcCCCccc
Q 009385          494 LEAISADPTNS---YYAANY------------ANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNp---eal~Ny------------A~~L~elGr~E~c  523 (536)
                      +++++++|+++   .++..+            |.++...|+.+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  162 (450)
T 2y4t_A          118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA  162 (450)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999998   776555            6668888876554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.22  E-value=1.7e-10  Score=114.63  Aligned_cols=109  Identities=14%  Similarity=0.064  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ---------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--------EPPDAESFSKYA  476 (536)
Q Consensus       414 gdyeeAee~YqKALeL---------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--------DPddaeAL~nLG  476 (536)
                      |++++|+++|++|+++         +|+...+|.|+|.+++ .+|++++|+.+|++++++        +++.+.++.++|
T Consensus        65 G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g  143 (472)
T 4g1t_A           65 GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG  143 (472)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence            7888888888888876         6777788888888777 588888888888888876        345678888888


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCCccc
Q 009385          477 SFLWRVR-NDLWAAEETFLEAISADPTNSYYAANYANFLWN---TGGEDTC  523 (536)
Q Consensus       477 ~~L~e~~-GD~eEAee~feKALeLDPdNpeal~NyA~~L~e---lGr~E~c  523 (536)
                      ..+...+ +++++|+++|++|++++|+++.++.+++.++..   .|+.+++
T Consensus       144 ~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~a  194 (472)
T 4g1t_A          144 WTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA  194 (472)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred             HHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence            7665433 468888888888888888888888888877544   4444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.22  E-value=1.3e-10  Score=113.98  Aligned_cols=109  Identities=14%  Similarity=0.063  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKY------------ASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nL------------G~~  478 (536)
                      |++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|++.   .++..+            |.+
T Consensus        74 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  152 (450)
T 2y4t_A           74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN  152 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999998877 68999999999999999999888   776665            444


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      +.. .|++++|+.+|+++++++|+++.++.++|.++...|+.+++.
T Consensus       153 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  197 (450)
T 2y4t_A          153 AFG-SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI  197 (450)
T ss_dssp             HHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGH
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHH
Confidence            655 468999999999999999998888888999998888877654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.22  E-value=9.4e-11  Score=119.70  Aligned_cols=109  Identities=8%  Similarity=0.063  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|+++++++|++..+|++++.++. ..|++++|+++|+++++.+|+++.++..+|.++... |++++|+++|
T Consensus       387 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~  464 (597)
T 2xpi_A          387 NKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL-GNILLANEYL  464 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999998887 689999999999999999999999999999988775 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      +++++++|+++.++.+++.++...|+.+++.
T Consensus       465 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  495 (597)
T 2xpi_A          465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAI  495 (597)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence            9999999999999999999999999876554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.21  E-value=5e-11  Score=95.68  Aligned_cols=94  Identities=16%  Similarity=0.184  Sum_probs=85.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009385          428 AQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       428 eLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal  507 (536)
                      +.+|+++.++..+|..++ ..|++++|+.+|+++++.+|+++.++..+|.++... |++++|+.+|+++++++|+++.++
T Consensus         6 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKL-GNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hcchhhhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCccCHHHH
Confidence            456778899999999888 699999999999999999999999999999988764 699999999999999999999999


Q ss_pred             HHHHHHHHHcCCCccc
Q 009385          508 ANYANFLWNTGGEDTC  523 (536)
Q Consensus       508 ~NyA~~L~elGr~E~c  523 (536)
                      .++|.++...|+.+++
T Consensus        84 ~~~~~~~~~~~~~~~A   99 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEA   99 (131)
T ss_dssp             HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCCHHHH
Confidence            9999999999987543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.20  E-value=1.6e-10  Score=91.36  Aligned_cols=89  Identities=15%  Similarity=0.050  Sum_probs=81.9

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN  512 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~  512 (536)
                      .+..++++|..+. ..|++++|+.+|++++..+|+++.++.++|.++... |++++|+.+|+++++++|+++.++.++|.
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4678889998887 699999999999999999999999999999988875 69999999999999999999999999999


Q ss_pred             HHHHcCCCccc
Q 009385          513 FLWNTGGEDTC  523 (536)
Q Consensus       513 ~L~elGr~E~c  523 (536)
                      ++...|+.+++
T Consensus        81 ~~~~~~~~~~A   91 (118)
T 1elw_A           81 ALEFLNRFEEA   91 (118)
T ss_dssp             HHHHTTCHHHH
T ss_pred             HHHHHhhHHHH
Confidence            99999987543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.20  E-value=2.8e-11  Score=109.35  Aligned_cols=108  Identities=22%  Similarity=0.251  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ--------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--------EPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeL--------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--------DPddaeAL~nLG~  477 (536)
                      +++++|+.+|++++++        +|....++.++|.++. ..|++++|+++|++++++        +|....++.++|.
T Consensus        57 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  135 (283)
T 3edt_B           57 NKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL  135 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            8999999999999988        4667789999999887 699999999999999999        5788899999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCccc
Q 009385          478 FLWRVRNDLWAAEETFLEAISA--------DPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeL--------DPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++.. .|++++|+.+|++++++        +|....++.++|.++...|+.+++
T Consensus       136 ~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  188 (283)
T 3edt_B          136 LCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA  188 (283)
T ss_dssp             HHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            8876 47999999999999999        777788899999999999987644

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.20  E-value=1.4e-10  Score=118.38  Aligned_cols=108  Identities=14%  Similarity=0.143  Sum_probs=89.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHhcCCH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV------EPPD-AESFSKYASFLWRVRNDL  486 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL------DPdd-aeAL~nLG~~L~e~~GD~  486 (536)
                      |++++|+++|+++++.+|+++.++.++|.++. ..|++++|+++|++++++      +|++ +.++..+|.++... |++
T Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~  532 (597)
T 2xpi_A          455 GNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL-KMY  532 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT-TCH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh-cCH
Confidence            78888888888888888888888888888777 588888888888888888      6665 78888888887764 688


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          487 WAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       487 eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|+++|+++++++|+++.++..++.++...|+.+++
T Consensus       533 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            8888888888888888888888888888888876543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.20  E-value=5.6e-11  Score=109.50  Aligned_cols=109  Identities=14%  Similarity=0.125  Sum_probs=95.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-----
Q 009385          414 ADYFRTELLYQTGLAQEPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE---SFSKYASFLWRV-----  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae---AL~nLG~~L~e~-----  482 (536)
                      |++++|+..|+++++.+|+++   .+++++|.+++ ..|++++|+..|+++++.+|+++.   +++.+|.++...     
T Consensus        18 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~   96 (225)
T 2yhc_A           18 GNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL   96 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence            899999999999999999874   78999999988 699999999999999999999975   889999887652     


Q ss_pred             ------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCCccc
Q 009385          483 ------------RNDLWAAEETFLEAISADPTNSYYA-----------------ANYANFLWNTGGEDTC  523 (536)
Q Consensus       483 ------------~GD~eEAee~feKALeLDPdNpeal-----------------~NyA~~L~elGr~E~c  523 (536)
                                  .|++++|+..|+++++.+|+++.+.                 ..+|.++...|+++++
T Consensus        97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A  166 (225)
T 2yhc_A           97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV  166 (225)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence                        3589999999999999999998654                 5778889999987544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.20  E-value=2.3e-10  Score=91.40  Aligned_cols=88  Identities=27%  Similarity=0.472  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++.+|++..++..+|.++.. .|++++|+.+|
T Consensus        49 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~  126 (136)
T 2fo7_A           49 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYY  126 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-HccHHHHHHHH
Confidence            79999999999999999999999999999887 68999999999999999999999999999998876 57999999999


Q ss_pred             HHHHHhCCCC
Q 009385          494 LEAISADPTN  503 (536)
Q Consensus       494 eKALeLDPdN  503 (536)
                      +++++++|++
T Consensus       127 ~~~~~~~~~~  136 (136)
T 2fo7_A          127 QKALELDPRS  136 (136)
T ss_dssp             HHHHHHSTTC
T ss_pred             HHHHccCCCC
Confidence            9999999974

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.20  E-value=1.8e-10  Score=91.63  Aligned_cols=93  Identities=26%  Similarity=0.432  Sum_probs=82.5

Q ss_pred             hCCCC-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 009385          429 QEPND-PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYA  507 (536)
Q Consensus       429 LdPdn-~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal  507 (536)
                      .+|.+ ..+++++|.++. ..|++++|+++|+++++.+|++..++..+|.++... |++++|+.+|+++++++|+++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             ----CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCccHHHH
Confidence            46766 788999998877 699999999999999999999999999999988774 699999999999999999999999


Q ss_pred             HHHHHHHHHcCCCccc
Q 009385          508 ANYANFLWNTGGEDTC  523 (536)
Q Consensus       508 ~NyA~~L~elGr~E~c  523 (536)
                      .++|.++...|+.+++
T Consensus        81 ~~la~~~~~~~~~~~A   96 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEA   96 (125)
T ss_dssp             HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcCHHHH
Confidence            9999999999987544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.19  E-value=5.8e-11  Score=110.42  Aligned_cols=103  Identities=18%  Similarity=0.059  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHhCCCCHHHH----------
Q 009385          414 ADYFRTELLYQTGLAQEPND---PLLLANYAQFLYIV--------AHDYDRAEEYFKRAIAVEPPDAESF----------  472 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---~eAL~NLA~lL~e~--------~GD~deAEe~FeKALeLDPddaeAL----------  472 (536)
                      |++++|+..|+++++++|++   +.+++++|.+++ .        .|++++|+.+|+++++.+|++..+.          
T Consensus        66 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           66 KEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence            89999999999999998865   678999998877 6        8999999999999999999997766          


Q ss_pred             -------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcC
Q 009385          473 -------SKYASFLWRVRNDLWAAEETFLEAISADPT---NSYYAANYANFLWNTG  518 (536)
Q Consensus       473 -------~nLG~~L~e~~GD~eEAee~feKALeLDPd---Npeal~NyA~~L~elG  518 (536)
                             +.+|.++... |++++|+.+|+++++..|+   .+.+++++|.++..+|
T Consensus       145 ~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g  199 (261)
T 3qky_A          145 AKLARKQYEAARLYERR-ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA  199 (261)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence                   7889988764 7999999999999999999   4568999999999873

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.17  E-value=8.8e-11  Score=117.66  Aligned_cols=107  Identities=20%  Similarity=0.309  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|+++++++|+ ..++.++|.++. ..|++++|+++|+++++.+|+++.++..+|.++... |++++|+.+|
T Consensus       257 ~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~  333 (537)
T 3fp2_A          257 NNLLDAQVLLQESINLHPT-PNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL-QDYKNAKEDF  333 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence            8999999999999999999 999999999877 689999999999999999999999999999988864 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++++++|+++.++.++|.++...|+.+++
T Consensus       334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  363 (537)
T 3fp2_A          334 QKAQSLNPENVYPYIQLACLLYKQGKFTES  363 (537)
T ss_dssp             HHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999997654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-10  Score=96.29  Aligned_cols=94  Identities=18%  Similarity=0.134  Sum_probs=86.5

Q ss_pred             HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 009385          428 AQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNS  504 (536)
Q Consensus       428 eLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNp  504 (536)
                      ..+|.+...++.+|..++ ..|++++|+++|+++++++|++   ..++.++|.++... |++++|+.+|+++++++|+++
T Consensus        22 ~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSCCH
T ss_pred             ccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCccCH
Confidence            457889999999999888 6899999999999999999998   89999999988775 699999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCccc
Q 009385          505 YYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       505 eal~NyA~~L~elGr~E~c  523 (536)
                      .+++++|.++...|+.+++
T Consensus       100 ~~~~~~a~~~~~~~~~~~A  118 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQA  118 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHH
Confidence            9999999999999987544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.17  E-value=1.4e-10  Score=94.93  Aligned_cols=89  Identities=16%  Similarity=0.225  Sum_probs=75.8

Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHH
Q 009385          429 QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPT--NSYY  506 (536)
Q Consensus       429 LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd--Npea  506 (536)
                      .+|+++.+++++|.+++ ..|++++|+++|+++++++|+++.+++++|.++... |++++|+++|++|++++|+  +...
T Consensus         2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYERL-DRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhhcCCchhH
Confidence            58999999999999888 699999999999999999999999999999988774 7999999999999999874  4566


Q ss_pred             HHHHHHHHHHcCC
Q 009385          507 AANYANFLWNTGG  519 (536)
Q Consensus       507 l~NyA~~L~elGr  519 (536)
                      ...+..+|...+.
T Consensus        80 ~~~l~~~l~~~~~   92 (100)
T 3ma5_A           80 LSELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccc
Confidence            6677777765543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.17  E-value=6.2e-12  Score=130.25  Aligned_cols=108  Identities=8%  Similarity=0.079  Sum_probs=101.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD---------------AESFSKYASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd---------------aeAL~nLG~~  478 (536)
                      +++++|+..|+++++.+|+++.++.++|..++ ..|+|++|+.+|++||+++|++               ..+++++|.+
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            57778999999999999999999999999988 6999999999999999999999               7999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +... |++++|+.+|++|++++|+++.+++++|.+|..+|+++++
T Consensus       327 ~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A  370 (457)
T 1kt0_A          327 YLKL-REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA  370 (457)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHh-cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHH
Confidence            8875 6999999999999999999999999999999999987543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=6.8e-11  Score=113.63  Aligned_cols=106  Identities=13%  Similarity=0.085  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVA-HDYDRAEEYFKRAIAVEPPD------AESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~-GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~  480 (536)
                      |++++|+.+|++|+++.|..      ..++.++|.++. .. |++++|+.+|++|+++.|++      ..++.++|.++.
T Consensus        91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  169 (292)
T 1qqe_A           91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            89999999999999998764      568999998877 65 99999999999999999876      578999999888


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCCc
Q 009385          481 RVRNDLWAAEETFLEAISADPTNSY-------YAANYANFLWNTGGED  521 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDPdNpe-------al~NyA~~L~elGr~E  521 (536)
                      .. |++++|+.+|+++++++|++..       ++.++|.++..+|+.+
T Consensus       170 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~  216 (292)
T 1qqe_A          170 LD-GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAV  216 (292)
T ss_dssp             HT-TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             Hh-CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHH
Confidence            75 6999999999999999998764       5789999999999863

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=1.5e-10  Score=106.73  Aligned_cols=109  Identities=11%  Similarity=0.011  Sum_probs=95.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----------------hCCHHHHHHHHHHHHHhCCCCHHHH-
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL---LLANYAQFLYIV-----------------AHDYDRAEEYFKRAIAVEPPDAESF-  472 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e---AL~NLA~lL~e~-----------------~GD~deAEe~FeKALeLDPddaeAL-  472 (536)
                      +++++|+..|+++++.+|+++.   +++.+|.+++..                 .|++++|+..|+++++.+|+++.+. 
T Consensus        55 ~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           55 ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            8999999999999999999975   788899877631                 4789999999999999999998665 


Q ss_pred             ----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCCccc
Q 009385          473 ----------------SKYASFLWRVRNDLWAAEETFLEAISADPTNS---YYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       473 ----------------~nLG~~L~e~~GD~eEAee~feKALeLDPdNp---eal~NyA~~L~elGr~E~c  523 (536)
                                      ..+|.++.. .|++++|+..|+++++..|+++   .++..+|.++.++|+.+.+
T Consensus       135 a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A  203 (225)
T 2yhc_A          135 ATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA  203 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence                            567777776 4699999999999999999997   5699999999999987654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.16  E-value=8.8e-11  Score=116.66  Aligned_cols=104  Identities=15%  Similarity=0.136  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      +++++|+..|++|++++|+++.++.++|..+..   ..+++++|+++|++++.++|+++.++.++|.++.. .|++++|+
T Consensus       189 ~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~  267 (472)
T 4g1t_A          189 PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAI  267 (472)
T ss_dssp             CCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             hHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH-cCchHHHH
Confidence            455556666666666666666666666644331   23456666666666666666666666666666554 34666666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      .+|++|++++|+++.++.++|.++...+
T Consensus       268 ~~~~~al~~~p~~~~~~~~lg~~y~~~~  295 (472)
T 4g1t_A          268 ELLKKALEYIPNNAYLHCQIGCCYRAKV  295 (472)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence            6666666666666666666666665443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.15  E-value=1.9e-11  Score=109.70  Aligned_cols=108  Identities=9%  Similarity=-0.033  Sum_probs=94.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----------------ESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----------------eAL~nLG~  477 (536)
                      +++++|.+.|.......+.....+.++|..++ ..|++++|+.+|++++++.|+++                .++.++|.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~   96 (198)
T 2fbn_A           18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT   96 (198)
T ss_dssp             ----CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence            67777777777777777888889999999888 69999999999999999999998                89999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          478 FLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++... |++++|+.+|++|++++|+++.+++++|.++..+|+++++
T Consensus        97 ~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  141 (198)
T 2fbn_A           97 CYNKN-KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA  141 (198)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHh-cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHH
Confidence            88774 6999999999999999999999999999999999987644

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.14  E-value=1e-10  Score=115.82  Aligned_cols=109  Identities=19%  Similarity=0.228  Sum_probs=95.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHh--cCC
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE------SFSKYASFLWRV--RND  485 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae------AL~nLG~~L~e~--~GD  485 (536)
                      |++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.      ++..+|.++...  .|+
T Consensus       352 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  430 (514)
T 2gw1_A          352 NKFDDCETLFSEAKRKFPEAPEVPNFFAEILT-DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN  430 (514)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred             CCHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence            78999999999999999999999999998877 689999999999999999998865      889999877651  468


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          486 LWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       486 ~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++|+.+|+++++++|+++.++.++|.++...|+.+++
T Consensus       431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  468 (514)
T 2gw1_A          431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA  468 (514)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999999999987544

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.14  E-value=1.9e-10  Score=103.93  Aligned_cols=110  Identities=20%  Similarity=0.274  Sum_probs=97.4

Q ss_pred             cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQ--------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--------EPPDAESFSKYA  476 (536)
Q Consensus       413 ~gdyeeAee~YqKALeL--------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--------DPddaeAL~nLG  476 (536)
                      .+++++|+.+|++++.+        +|....++.++|.+++ ..|++++|+.+|++++++        +|....++.++|
T Consensus        98 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  176 (283)
T 3edt_B           98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA  176 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            38999999999999999        5778899999999888 699999999999999999        888889999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh-------------------------------------------------CCCCHHHH
Q 009385          477 SFLWRVRNDLWAAEETFLEAISA-------------------------------------------------DPTNSYYA  507 (536)
Q Consensus       477 ~~L~e~~GD~eEAee~feKALeL-------------------------------------------------DPdNpeal  507 (536)
                      .++... |++++|+.+|++++++                                                 .|..+.++
T Consensus       177 ~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (283)
T 3edt_B          177 SCYLKQ-GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL  255 (283)
T ss_dssp             HHHHHH-TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            988875 6999999999999997                                                 24556678


Q ss_pred             HHHHHHHHHcCCCcccc
Q 009385          508 ANYANFLWNTGGEDTCF  524 (536)
Q Consensus       508 ~NyA~~L~elGr~E~cl  524 (536)
                      .++|.++...|+.+++.
T Consensus       256 ~~la~~~~~~g~~~~A~  272 (283)
T 3edt_B          256 RSLGALYRRQGKLEAAH  272 (283)
T ss_dssp             HHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHH
Confidence            89999999999887654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.13  E-value=2e-10  Score=99.87  Aligned_cols=89  Identities=20%  Similarity=0.216  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV------------------EPPDAESFSKYASFLWRVRNDLWAAEETFL  494 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeL------------------DPddaeAL~nLG~~L~e~~GD~eEAee~fe  494 (536)
                      .+..+.+.|..++ ..|++++|+.+|++||++                  +|.++.++.++|.++... |++++|+.+|+
T Consensus        10 ~a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~~~~   87 (162)
T 3rkv_A           10 SVEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-GDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence            3567889999888 699999999999999999                  788889999999998875 69999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          495 EAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       495 KALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +|++++|+++.+++++|.++..+|+++.+
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A  116 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEA  116 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHH
Confidence            99999999999999999999999987644

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.13  E-value=1.8e-10  Score=92.71  Aligned_cols=91  Identities=16%  Similarity=0.195  Sum_probs=82.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------
Q 009385          431 PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTN-------  503 (536)
Q Consensus       431 Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN-------  503 (536)
                      |..+..++++|..++ ..|++++|+.+|+++++.+|+++.++.++|.++... |++++|+.+|+++++++|++       
T Consensus         1 ~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~   78 (131)
T 1elr_A            1 GKQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQI   78 (131)
T ss_dssp             CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             ChHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccccchhHHHH
Confidence            345678899998887 699999999999999999999999999999988775 69999999999999999988       


Q ss_pred             HHHHHHHHHHHHHcCCCccc
Q 009385          504 SYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       504 peal~NyA~~L~elGr~E~c  523 (536)
                      +.++.++|.++...|+.+++
T Consensus        79 ~~~~~~la~~~~~~~~~~~A   98 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDA   98 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHH
Confidence            89999999999999987544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.12  E-value=8.3e-11  Score=113.04  Aligned_cols=110  Identities=9%  Similarity=-0.091  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPN------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd------n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      |++++|+.+|++|+++.+.      .+.++.++|.++. ..|++++|+.+|++|+++.|..      +.++.++|.++..
T Consensus        51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~  129 (292)
T 1qqe_A           51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (292)
T ss_dssp             TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999999542      2678999998877 6999999999999999998865      5689999998876


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCcccc
Q 009385          482 VRNDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr~E~cl  524 (536)
                      ..|++++|+.+|++|+++.|++      ..++.++|.++..+|+++++.
T Consensus       130 ~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A          130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            3269999999999999998865      567889999999999986554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.11  E-value=5.5e-10  Score=94.34  Aligned_cols=89  Identities=19%  Similarity=0.114  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN  512 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~  512 (536)
                      .+..+.++|..++ ..|++++|+.+|+++++++|+++.++.++|.++... |++++|+.+|+++++++|+++.++.++|.
T Consensus        12 ~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           12 RAEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            3577888998887 699999999999999999999999999999988764 69999999999999999999999999999


Q ss_pred             HHHHcCCCccc
Q 009385          513 FLWNTGGEDTC  523 (536)
Q Consensus       513 ~L~elGr~E~c  523 (536)
                      ++...|+.+++
T Consensus        90 ~~~~~~~~~~A  100 (166)
T 1a17_A           90 SNMALGKFRAA  100 (166)
T ss_dssp             HHHHTTCHHHH
T ss_pred             HHHHhccHHHH
Confidence            99999987654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.11  E-value=2.8e-10  Score=109.70  Aligned_cols=91  Identities=16%  Similarity=0.125  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 009385          431 PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANY  510 (536)
Q Consensus       431 Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~Ny  510 (536)
                      |+++.++.++|..++ ..|++++|+.+|++|++++|+++.+++++|.++... |++++|+.+|++|++++|+++.+++++
T Consensus         1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            678899999999888 699999999999999999999999999999988875 699999999999999999999999999


Q ss_pred             HHHHHHcCCCccc
Q 009385          511 ANFLWNTGGEDTC  523 (536)
Q Consensus       511 A~~L~elGr~E~c  523 (536)
                      |.++..+|+.+++
T Consensus        79 g~~~~~~g~~~~A   91 (281)
T 2c2l_A           79 GQCQLEMESYDEA   91 (281)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHH
Confidence            9999999987654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.10  E-value=3.7e-10  Score=92.69  Aligned_cols=87  Identities=16%  Similarity=0.142  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 009385          435 LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA---ESFSKYASFLWRVRNDLWAAEETFLEAISADPTN---SYYAA  508 (536)
Q Consensus       435 eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda---eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdN---peal~  508 (536)
                      .+++++|..++ ..|++++|+.+|+++++.+|+++   .+++.+|.++... |++++|+.+|+++++.+|++   +.+++
T Consensus         3 ~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            3 RTAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             CCHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            35778898887 69999999999999999999999   8999999988875 69999999999999999999   88999


Q ss_pred             HHHHHHHHcCCCccc
Q 009385          509 NYANFLWNTGGEDTC  523 (536)
Q Consensus       509 NyA~~L~elGr~E~c  523 (536)
                      ++|.++..+|+.+++
T Consensus        81 ~la~~~~~~g~~~~A   95 (129)
T 2xev_A           81 KLGLSQYGEGKNTEA   95 (129)
T ss_dssp             HHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHcCCHHHH
Confidence            999999999987644

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.10  E-value=9.5e-11  Score=93.34  Aligned_cols=81  Identities=11%  Similarity=0.071  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL-LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e-AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      +++++|+.+|+++++.+|+++. +++++|.+++ ..|++++|+++|+++++++|+++.++.+         +.+.+|+.+
T Consensus        14 ~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~---------~~~~~a~~~   83 (99)
T 2kc7_A           14 GDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR---------KMVMDILNF   83 (99)
T ss_dssp             TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH---------HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH---------HHHHHHHHH
Confidence            5666666666666666666666 6666666555 4566666666666666666666665432         135566666


Q ss_pred             HHHHHHhCCCCH
Q 009385          493 FLEAISADPTNS  504 (536)
Q Consensus       493 feKALeLDPdNp  504 (536)
                      |++++..+|+++
T Consensus        84 ~~~~~~~~p~~~   95 (99)
T 2kc7_A           84 YNKDMYNQLEHH   95 (99)
T ss_dssp             HCCTTHHHHCCS
T ss_pred             HHHHhccCcccc
Confidence            666666666543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.09  E-value=8.3e-11  Score=116.52  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=90.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++++..+|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.++.. .|++++|+.+|
T Consensus       284 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  361 (514)
T 2gw1_A          284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF-ILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR-ENKFDDCETLF  361 (514)
T ss_dssp             SCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            77888888888888888888888888888777 58888888888888888888888888888887765 46888888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++++.+|+++.++.++|.++...|+.+++
T Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  391 (514)
T 2gw1_A          362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKA  391 (514)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHCCCHHHH
Confidence            888888888888888888888888876544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.08  E-value=3.7e-10  Score=105.00  Aligned_cols=89  Identities=20%  Similarity=0.127  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP-------DAE-----SFSKYASFLWRVRNDLWAAEETFLEAISA--  499 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd-------dae-----AL~nLG~~L~e~~GD~eEAee~feKALeL--  499 (536)
                      ...+.+.|..++ ..|+|++|+.+|++||+++|+       +..     +|.++|.++... |++++|+.+|++||++  
T Consensus        11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhh
Confidence            567888999888 689999999999999999999       544     999999999876 6999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHcCCCcccc
Q 009385          500 -----DPTNSYYA----ANYANFLWNTGGEDTCF  524 (536)
Q Consensus       500 -----DPdNpeal----~NyA~~L~elGr~E~cl  524 (536)
                           +|+++.++    ++.|.+|..+|++++++
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl  122 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAM  122 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH
Confidence                 99999999    99999999999986543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.08  E-value=1.4e-09  Score=101.25  Aligned_cols=105  Identities=11%  Similarity=0.110  Sum_probs=84.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCC
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV----AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RND  485 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~----~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD  485 (536)
                      .+++++|+.+|++|++++  ++.+++++|.++. .    .+++++|+++|++|++.  +++.+++++|.++...   .++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~  129 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYY-SGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD  129 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHh-CCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC
Confidence            578888888888888875  7888888887766 6    78888888888888887  4888888888877650   358


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCcccc
Q 009385          486 LWAAEETFLEAISADPTNSYYAANYANFLWN----TGGEDTCF  524 (536)
Q Consensus       486 ~eEAee~feKALeLDPdNpeal~NyA~~L~e----lGr~E~cl  524 (536)
                      +++|+.+|++|++++  ++.++.++|.++..    .++.++++
T Consensus       130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~  170 (273)
T 1ouv_A          130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKAL  170 (273)
T ss_dssp             HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            888998998888876  57788888888887    66665544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.05  E-value=1.4e-09  Score=103.79  Aligned_cols=108  Identities=12%  Similarity=-0.011  Sum_probs=93.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAI---AVEPPDA----ESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKAL---eLDPdda----eAL~nLG~~L~  480 (536)
                      +++++|+.+|++|+++.+..      ..+++++|.++. ..|++++|+.+|++|+   +..|++.    .+++++|.++.
T Consensus       129 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 2qfc_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence            79999999999999876654      668999998887 6999999999999999   5677754    68999999888


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCccc
Q 009385          481 RVRNDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr~E~c  523 (536)
                      .. |++++|+.+|++|+++.++.      +.++.++|.++..+|+.+++
T Consensus       208 ~~-~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          208 LD-SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HH-hhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            75 69999999999999986541      67899999999999998765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.01  E-value=9.6e-10  Score=113.55  Aligned_cols=108  Identities=19%  Similarity=0.231  Sum_probs=95.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDP-LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~-eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      .|++++|...|+++++++|+++ .+|.+++.++. ..|++++|.++|++|++..|.+...+...+.+.+...|++++|..
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence            4899999999999999999996 69999998877 589999999999999999999888887777665545679999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +|++|++.+|+++.++.+|+.++...|+.+
T Consensus       413 ~~e~al~~~p~~~~~~~~~~~~~~~~g~~~  442 (530)
T 2ooe_A          413 IFELGLKKYGDIPEYVLAYIDYLSHLNEDN  442 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTTTCHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHhCCCHh
Confidence            999999999999999999999999999764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.01  E-value=2.9e-10  Score=104.75  Aligned_cols=109  Identities=22%  Similarity=0.232  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ--------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--------PPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeL--------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--------PddaeAL~nLG~  477 (536)
                      +++++|+.+|++++.+        +|....++.++|.++. ..|++++|+.+|++++++.        |....++.++|.
T Consensus        83 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~  161 (311)
T 3nf1_A           83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL  161 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            8999999999999998        4667789999999887 6999999999999999984        667788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          478 FLWRVRNDLWAAEETFLEAISA--------DPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeL--------DPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      ++.. .|++++|+.+|++++++        +|..+.++.++|.++...|+.+++.
T Consensus       162 ~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  215 (311)
T 3nf1_A          162 LCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE  215 (311)
T ss_dssp             HHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            8876 47999999999999999        7777888999999999999876543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.01  E-value=4.6e-10  Score=92.49  Aligned_cols=109  Identities=13%  Similarity=0.136  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      +++++|+.+|++++++.+...      .++.++|.++. ..|++++|+++|++++++.+..      ..++.++|.++..
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           23 GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            799999999999999876433      48889998887 6999999999999999987654      6789999998877


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCcccc
Q 009385          482 VRNDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr~E~cl  524 (536)
                      . |++++|+.+|++++++.+..      +.++.++|.++...|+.+++.
T Consensus       102 ~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A          102 L-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             H-hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence            4 69999999999999874322      456889999999999876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.00  E-value=4e-10  Score=103.81  Aligned_cols=110  Identities=22%  Similarity=0.301  Sum_probs=97.2

Q ss_pred             cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQE--------PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV--------EPPDAESFSKYA  476 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLd--------Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL--------DPddaeAL~nLG  476 (536)
                      .+++++|+.+|++++++.        |....++.++|.++. ..|++++|+++|++++++        +|....++..+|
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  202 (311)
T 3nf1_A          124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA  202 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            389999999999999984        667788999999887 689999999999999999        888889999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh-------------------------------------------------CCCCHHHH
Q 009385          477 SFLWRVRNDLWAAEETFLEAISA-------------------------------------------------DPTNSYYA  507 (536)
Q Consensus       477 ~~L~e~~GD~eEAee~feKALeL-------------------------------------------------DPdNpeal  507 (536)
                      .++... |++++|+.+|++++++                                                 +|.++.++
T Consensus       203 ~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  281 (311)
T 3nf1_A          203 SCYLKQ-GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTL  281 (311)
T ss_dssp             HHHHHH-TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHH
Confidence            988875 6999999999999985                                                 46677789


Q ss_pred             HHHHHHHHHcCCCcccc
Q 009385          508 ANYANFLWNTGGEDTCF  524 (536)
Q Consensus       508 ~NyA~~L~elGr~E~cl  524 (536)
                      .++|.++...|+.+++.
T Consensus       282 ~~la~~~~~~g~~~~A~  298 (311)
T 3nf1_A          282 KNLGALYRRQGKFEAAE  298 (311)
T ss_dssp             HHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHH
Confidence            99999999999876654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.00  E-value=4.3e-09  Score=97.88  Aligned_cols=105  Identities=17%  Similarity=0.139  Sum_probs=92.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCC
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV----AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RND  485 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~----~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD  485 (536)
                      .+++++|+.+|++|++.+  ++.+++++|.++. .    .+++++|+++|++|++.+  ++.++.++|.++...   .++
T Consensus        91 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~  165 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDLK--YAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD  165 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred             ccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC
Confidence            689999999999999984  8999999998877 6    899999999999999976  789999999987751   469


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCcccc
Q 009385          486 LWAAEETFLEAISADPTNSYYAANYANFLWN----TGGEDTCF  524 (536)
Q Consensus       486 ~eEAee~feKALeLDPdNpeal~NyA~~L~e----lGr~E~cl  524 (536)
                      +++|+.+|++|++.  +++.++.++|.++..    .++.++++
T Consensus       166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~  206 (273)
T 1ouv_A          166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEAL  206 (273)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            99999999999987  468899999999999    88776654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.00  E-value=2.3e-10  Score=91.24  Aligned_cols=80  Identities=14%  Similarity=0.110  Sum_probs=71.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e~~GD~e  487 (536)
                      +++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|+++++++|++      ..++..+|.++... |+++
T Consensus        18 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~   95 (111)
T 2l6j_A           18 GLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAV-GSVQ   95 (111)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHH-HCCC
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH-HhHh
Confidence            89999999999999999999999999999888 6999999999999999999999      89999999887765 4777


Q ss_pred             HHHHHHHH
Q 009385          488 AAEETFLE  495 (536)
Q Consensus       488 EAee~feK  495 (536)
                      +|+..|++
T Consensus        96 ~a~~~~~~  103 (111)
T 2l6j_A           96 IPVVEVDE  103 (111)
T ss_dssp             CCSSSSSS
T ss_pred             hhHhHHHH
Confidence            77665544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.00  E-value=4.5e-10  Score=109.19  Aligned_cols=104  Identities=14%  Similarity=0.180  Sum_probs=95.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhc
Q 009385          414 ADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRAEEYFKRAIAV------EPPDAESFSKYASFLWRVR  483 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~----eAL~NLA~lL~e~~GD~deAEe~FeKALeL------DPddaeAL~nLG~~L~e~~  483 (536)
                      |++++|+.+|+++++++|+++    .++.++|.+++ ..|++++|+.+|++++++      +|..+.++.++|.++... 
T Consensus        62 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-  139 (411)
T 4a1s_A           62 GDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM-  139 (411)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred             CcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC-
Confidence            899999999999999999998    58889998888 689999999999999999      788899999999988764 


Q ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q 009385          484 NDLWAAEETFLEAISA------DPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       484 GD~eEAee~feKALeL------DPdNpeal~NyA~~L~elGr  519 (536)
                      |++++|+.+|++|+++      .|....++.++|.++...|+
T Consensus       140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            7999999999999999      67777789999999999998

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.98  E-value=4.7e-09  Score=83.44  Aligned_cols=86  Identities=13%  Similarity=0.097  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHH
Q 009385          438 ANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE-SFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYA--ANYANFL  514 (536)
Q Consensus       438 ~NLA~lL~e~~GD~deAEe~FeKALeLDPddae-AL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal--~NyA~~L  514 (536)
                      ++.|..+. ..|++++|+++|+++++.+|+++. +++++|.++... |++++|+++|++|++++|+++.++  ..++.++
T Consensus         4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~   81 (99)
T 2kc7_A            4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIELNPDSPALQARKMVMDIL   81 (99)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56787777 689999999999999999999999 999999988875 699999999999999999999987  6677766


Q ss_pred             HHcCCCccccC
Q 009385          515 WNTGGEDTCFP  525 (536)
Q Consensus       515 ~elGr~E~clp  525 (536)
                      ....+....-|
T Consensus        82 ~~~~~~~~~~p   92 (99)
T 2kc7_A           82 NFYNKDMYNQL   92 (99)
T ss_dssp             HHHCCTTHHHH
T ss_pred             HHHHHHhccCc
Confidence            66555444333

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.97  E-value=9e-10  Score=105.14  Aligned_cols=107  Identities=14%  Similarity=0.001  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAV-------EPPDAESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKALeL-------DPddaeAL~nLG~~L~  480 (536)
                      +++++|+.+|++|+.+.+..      ..++.++|.++. ..|++++|+.+|++|++.       .+..+.+++++|.++.
T Consensus       129 ~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 3u3w_A          129 VDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             SCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            79999999999999975443      347999998887 699999999999999952       2333568999999988


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCC-cc
Q 009385          481 RVRNDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGGE-DT  522 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr~-E~  522 (536)
                      .. |++++|+.+|++|+++.+..      +.++.++|.++..+|+. ++
T Consensus       208 ~~-~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~  255 (293)
T 3u3w_A          208 LD-SRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HH-hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            75 69999999999999987655      77899999999999953 44

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.97  E-value=1.8e-10  Score=95.70  Aligned_cols=76  Identities=21%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             hCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          448 AHDYDRAEEYFKRAIAV---EPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       448 ~GD~deAEe~FeKALeL---DPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      .|++++|+.+|++++++   +|+++.++.++|.++... |++++|+.+|++|++++|+++.++.++|.++..+|+.+++.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            68999999999999999   699999999999988875 69999999999999999999999999999999999976543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.95  E-value=6.3e-09  Score=80.24  Aligned_cols=67  Identities=28%  Similarity=0.463  Sum_probs=63.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e  481 (536)
                      +++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++.++|.++..
T Consensus        23 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            79999999999999999999999999999888 69999999999999999999999999999987764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.95  E-value=1.2e-09  Score=107.21  Aligned_cols=108  Identities=11%  Similarity=0.046  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND-------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA------ESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn-------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda------eAL~nLG~~L~  480 (536)
                      |++++|+.+|++|+++.+..       ..++.++|.++. ..|++++|+++|++|+++.|...      .++.++|.++.
T Consensus       157 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  235 (383)
T 3ulq_A          157 KQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN  235 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            67777777777777774333       346777776666 57777777777777777754332      46777777666


Q ss_pred             HhcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCCccc
Q 009385          481 RVRNDLWAAEETFLEAIS-----AD-PTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       481 e~~GD~eEAee~feKALe-----LD-PdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .. |++++|+.+|++|++     .+ |..+.++.++|.++..+|+.+++
T Consensus       236 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          236 SQ-SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HC-CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence            53 577777777777777     45 66677777777777777776543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=4.3e-09  Score=101.48  Aligned_cols=94  Identities=20%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHH------------------
Q 009385          429 QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAE------------------  490 (536)
Q Consensus       429 LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAe------------------  490 (536)
                      .-|++...++.+|..+. ..|++++|+..|+++++++|+++.+++++|.++... |++++|+                  
T Consensus       112 ~lp~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~-g~~~~A~~~l~~~~~~~p~~~~~~~  189 (287)
T 3qou_A          112 VLPREEELXAQQAMQLM-QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIAL-NRSEDAEAVLXTIPLQDQDTRYQGL  189 (287)
T ss_dssp             HSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHT-TCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred             HcCCchhhHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHC-CCHHHHHHHHHhCchhhcchHHHHH
Confidence            34999999999999887 699999999999999999999999999999988764 5777765                  


Q ss_pred             ----------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          491 ----------------ETFLEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       491 ----------------e~feKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                                      +.|++|++++|+++.+++++|.+|...|+.+++.
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~  239 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL  239 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH
Confidence                            4566668889999999999999999999876543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.93  E-value=2.9e-09  Score=98.04  Aligned_cols=100  Identities=16%  Similarity=0.041  Sum_probs=87.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHh---cC
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV----AHDYDRAEEYFKRAIAVEP--PDAESFSKYASFLWRV---RN  484 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~----~GD~deAEe~FeKALeLDP--ddaeAL~nLG~~L~e~---~G  484 (536)
                      .++++|+.+|++|++  ++++.+++++|.++. .    .+|+++|+++|++|++.+|  +++.++++||.++...   .+
T Consensus        67 ~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~  143 (212)
T 3rjv_A           67 ADYPQARQLAEKAVE--AGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE  143 (212)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred             CCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence            489999999999964  689999999998765 4    6799999999999999998  4699999999988761   35


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          485 DLWAAEETFLEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       485 D~eEAee~feKALeLDPdNpeal~NyA~~L~el  517 (536)
                      ++++|+.+|++|+++ |+++.+++++|.+|..-
T Consensus       144 d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          144 DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence            899999999999998 78888999999988764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.93  E-value=1e-09  Score=100.70  Aligned_cols=107  Identities=13%  Similarity=0.140  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhc
Q 009385          414 ADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRAEEYFKRAIAV------EPPDAESFSKYASFLWRVR  483 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~----eAL~NLA~lL~e~~GD~deAEe~FeKALeL------DPddaeAL~nLG~~L~e~~  483 (536)
                      |++++|+.+|+++++.+|+++    .++.++|.+++ ..|++++|+.+|++++++      .|..+.++..+|.++.. .
T Consensus        19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~   96 (338)
T 3ro2_A           19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L   96 (338)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-c
Confidence            899999999999999999994    67889998887 699999999999999998      66778899999998876 4


Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCcc
Q 009385          484 NDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       484 GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr~E~  522 (536)
                      |++++|+.+|++|+++.|..      ..++.++|.++...|+.+.
T Consensus        97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  141 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG  141 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccc
Confidence            79999999999999987654      3378899999999998433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.93  E-value=1.2e-08  Score=109.86  Aligned_cols=149  Identities=13%  Similarity=0.016  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCcccc-------------CC----------HHHHHHHHH
Q 009385          368 REEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDY-------------AD----------YFRTELLYQ  424 (536)
Q Consensus       368 ~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~-------------gd----------yeeAee~Yq  424 (536)
                      .+..+..|...++..-...+ ....+.++++-+...+  ++.|++|             ++          +++|+.+|.
T Consensus        21 ~~~k~~~y~~~~~~~~~~~~-~~~~~eeal~~~~~~l--~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~   97 (567)
T 1dce_A           21 REQKLKLYQSATQAVFQKRQ-AGELDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLE   97 (567)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-TTCCSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHH
Confidence            45566667665544333222 3356667666544444  4455433             34          899999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 009385          425 TGLAQEPNDPLLLANYAQFLYIVAH--DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPT  502 (536)
Q Consensus       425 KALeLdPdn~eAL~NLA~lL~e~~G--D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd  502 (536)
                      ++|+.+|++..+|++.+.++. ..+  ++++|.+++++++++||.|..+|+..+.++...+..+++|+++++++++.+|.
T Consensus        98 ~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~  176 (567)
T 1dce_A           98 SCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS  176 (567)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC
Confidence            999999999999999998877 578  77999999999999999999999999988877543899999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCC
Q 009385          503 NSYYAANYANFLWNTGGE  520 (536)
Q Consensus       503 Npeal~NyA~~L~elGr~  520 (536)
                      |..++++.+.++..+++.
T Consensus       177 n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          177 NYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             CHHHHHHHHHHHHHHSCC
T ss_pred             CccHHHHHHHHHHhhccc
Confidence            999999999999887543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.93  E-value=1.3e-09  Score=95.43  Aligned_cols=108  Identities=11%  Similarity=0.103  Sum_probs=90.5

Q ss_pred             CCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLA------QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV---EPPD----AESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALe------LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL---DPdd----aeAL~nLG~~L~  480 (536)
                      |++++|+.+|++++.      ..|....++.++|.++. ..|++++|+++|++++++   .+++    +.++.++|.++.
T Consensus        40 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A           40 DRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL  118 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence            899999999999999      56667789999998887 699999999999999999   4533    567899999888


Q ss_pred             HhcCCHHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHcCCCccc
Q 009385          481 RVRNDLWAAEETFLEAISADP--TNSY----YAANYANFLWNTGGEDTC  523 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDP--dNpe----al~NyA~~L~elGr~E~c  523 (536)
                      .. |++++|+.+|++|+++.+  +++.    ++.++|.++...|+.+++
T Consensus       119 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  166 (203)
T 3gw4_A          119 HF-GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEA  166 (203)
T ss_dssp             HH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             Hh-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHH
Confidence            75 699999999999998643  3332    368999999999987654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.92  E-value=1.7e-09  Score=99.60  Aligned_cols=97  Identities=22%  Similarity=0.135  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---hcCCH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH----DYDRAEEYFKRAIAVEPPDAESFSKYASFLWR---VRNDL  486 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G----D~deAEe~FeKALeLDPddaeAL~nLG~~L~e---~~GD~  486 (536)
                      +++++|+.+|++|++.  +++.+++++|.++. . +    |+++|+++|++|+  +++++.++++||.++..   ..+++
T Consensus        32 ~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~  105 (212)
T 3rjv_A           32 GDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDV  105 (212)
T ss_dssp             TCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCH
Confidence            7999999999999875  68999999998876 3 6    9999999999995  57899999999987764   13599


Q ss_pred             HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Q 009385          487 WAAEETFLEAISADP--TNSYYAANYANFLWN  516 (536)
Q Consensus       487 eEAee~feKALeLDP--dNpeal~NyA~~L~e  516 (536)
                      ++|+.+|++|++..|  +++.+++++|.+|..
T Consensus       106 ~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A          106 AHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            999999999999988  468999999999988

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.90  E-value=3.6e-09  Score=109.24  Aligned_cols=92  Identities=18%  Similarity=0.290  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009385          418 RTELLYQTGLA-QEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFLWRVRNDLWAAEETFLE  495 (536)
Q Consensus       418 eAee~YqKALe-LdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L~e~~GD~eEAee~feK  495 (536)
                      +|...|++|++ ++|++..+|.+||.++. ..|++++|...|+++++++|+++ .+|.++|.++... |++++|+++|++
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~  381 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA-EGIKSGRMIFKK  381 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh-cCHHHHHHHHHH
Confidence            45555555554 45555555555554443 34555555555555555555553 3555555544432 345555555555


Q ss_pred             HHHhCCCCHHHHHHHH
Q 009385          496 AISADPTNSYYAANYA  511 (536)
Q Consensus       496 ALeLDPdNpeal~NyA  511 (536)
                      |++..|.+...+...+
T Consensus       382 Al~~~~~~~~~~~~~a  397 (530)
T 2ooe_A          382 AREDARTRHHVYVTAA  397 (530)
T ss_dssp             HHTCTTCCTHHHHHHH
T ss_pred             HHhccCCchHHHHHHH
Confidence            5555554444433333

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.90  E-value=1.1e-09  Score=107.44  Aligned_cols=109  Identities=10%  Similarity=0.104  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-------AESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALeL------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-------aeAL~nLG~~L~  480 (536)
                      |++++|+.+|++|+++      ++..+.+++++|.+++ ..|++++|+.+|++|+++.+..       +.++.++|.++.
T Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            8999999999999998      3335689999999888 6999999999999999995443       568999999888


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCCcccc
Q 009385          481 RVRNDLWAAEETFLEAISADPTNS------YYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDPdNp------eal~NyA~~L~elGr~E~cl  524 (536)
                      .. |++++|+++|++|+++.|...      .++.++|.++..+|+.+++.
T Consensus       196 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  244 (383)
T 3ulq_A          196 DL-KQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI  244 (383)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             Hh-cCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            75 699999999999999866443      47899999999999976543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.90  E-value=1.6e-08  Score=96.51  Aligned_cols=109  Identities=15%  Similarity=0.042  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL------LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e------AL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      ++|++|+..|+++++..|....      .++++|.++. ..|++++|+.+|++|+++.+..      ..+++++|.++..
T Consensus        89 ~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 2qfc_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            8999999999999999887663      3556676655 5789999999999999876655      6799999998887


Q ss_pred             hcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCCcccc
Q 009385          482 VRNDLWAAEETFLEAI---SADPTNS----YYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       482 ~~GD~eEAee~feKAL---eLDPdNp----eal~NyA~~L~elGr~E~cl  524 (536)
                      . |++++|+.+|++|+   +..|++.    .++.|+|.++..+|++++++
T Consensus       168 ~-~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          168 N-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             c-CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence            4 69999999999999   5577754    57899999999999987654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.89  E-value=2e-09  Score=103.00  Aligned_cols=104  Identities=13%  Similarity=0.162  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhc
Q 009385          414 ADYFRTELLYQTGLAQEPNDP----LLLANYAQFLYIVAHDYDRAEEYFKRAIAV------EPPDAESFSKYASFLWRVR  483 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~----eAL~NLA~lL~e~~GD~deAEe~FeKALeL------DPddaeAL~nLG~~L~e~~  483 (536)
                      |++++|+.+|+++++++|+++    .++.++|.+++ ..|++++|+.+|++++.+      .|..+.++..+|.++.. .
T Consensus        23 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~  100 (406)
T 3sf4_A           23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV-L  100 (406)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-c
Confidence            899999999999999999995    67889998887 699999999999999998      56668899999998876 4


Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 009385          484 NDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGG  519 (536)
Q Consensus       484 GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr  519 (536)
                      |++++|+.+|++|+++.|..      +.++.++|.++...|+
T Consensus       101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            79999999999999997754      4478899999999998

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.89  E-value=1.5e-09  Score=103.81  Aligned_cols=108  Identities=13%  Similarity=0.099  Sum_probs=80.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL------LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e------AL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      |++++|+.+|++++++.|+...      ++.++|.++. ..|++++|+.+|++++++.|..      +.++.++|.++..
T Consensus       201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  279 (406)
T 3sf4_A          201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  279 (406)
T ss_dssp             TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence            7888888888888877665543      7777887766 5788888888888888877766      6777888877765


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCccc
Q 009385          482 VRNDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr~E~c  523 (536)
                       .|++++|+.+|++|+++.+..      +.++.++|.++...|+.+++
T Consensus       280 -~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          280 -LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             -hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence             458888888888888875544      55677888888888876544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.87  E-value=1.9e-09  Score=104.25  Aligned_cols=109  Identities=12%  Similarity=0.025  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPN--D----PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd--n----~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      +++++|+.+|++|+++.+.  +    ..++.++|.++. . |++++|+++|++|+++.|.+      ..++.++|.++..
T Consensus        90 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  167 (307)
T 2ifu_A           90 QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR  167 (307)
T ss_dssp             TCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence            7888888888888887432  2    356778887765 4 88888888888888887754      5678888887776


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCCccccC
Q 009385          482 VRNDLWAAEETFLEAISADPTNS------YYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdNp------eal~NyA~~L~elGr~E~clp  525 (536)
                      . |++++|+.+|++|+++.|++.      .++.+++.++..+|+.+.+..
T Consensus       168 ~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          168 Q-QKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             c-CCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4 688888888888888888885      356777778888888776654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.87  E-value=4.6e-09  Score=91.80  Aligned_cols=109  Identities=18%  Similarity=0.096  Sum_probs=89.9

Q ss_pred             cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhcCC
Q 009385          413 YADYFRTELLYQTGLAQEP-NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIA------VEPPDAESFSKYASFLWRVRND  485 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdP-dn~eAL~NLA~lL~e~~GD~deAEe~FeKALe------LDPddaeAL~nLG~~L~e~~GD  485 (536)
                      .|++++|++.++.... +| ....++.++|.++. ..|++++|+.+|+++++      ..|..+.++.++|.++... |+
T Consensus         5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~   81 (203)
T 3gw4_A            5 AHDYALAERQAQALLA-HPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA-GN   81 (203)
T ss_dssp             --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TC
T ss_pred             cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc-CC
Confidence            3899999996655544 55 77899999998887 69999999999999999      5667788999999988764 79


Q ss_pred             HHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCCcccc
Q 009385          486 LWAAEETFLEAISA---DPTN----SYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       486 ~eEAee~feKALeL---DPdN----peal~NyA~~L~elGr~E~cl  524 (536)
                      +++|+.+|++|+++   .+++    ..++.++|.++...|+.+++.
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  127 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR  127 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            99999999999998   4543    456889999999999976543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.87  E-value=1.1e-09  Score=108.92  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=48.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .++|++|+.+|++||+++|++..+|+++|.++. ..|++++|+.+|+++++++|++..++.+++.+.....++.++|..+
T Consensus       243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999999999999999999888 6999999999999999999999999999998866666788999999


Q ss_pred             HHHHHHhCCCCHH
Q 009385          493 FLEAISADPTNSY  505 (536)
Q Consensus       493 feKALeLDPdNpe  505 (536)
                      |.+++..+|+++.
T Consensus       322 ~~~~l~~~p~~~~  334 (338)
T 2if4_A          322 YKGIFKGKDEGGA  334 (338)
T ss_dssp             -------------
T ss_pred             HHHhhCCCCCCCC
Confidence            9999999998875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.85  E-value=8.4e-09  Score=86.36  Aligned_cols=74  Identities=20%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385          430 EPNDPLLLANYAQFLYIVAHD---YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY  505 (536)
Q Consensus       430 dPdn~eAL~NLA~lL~e~~GD---~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe  505 (536)
                      +|+|+.++..||.+++ ..++   .++|...|++||++||+++.++..+|..+++ .|+|++|+.+|+++++.+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~-~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLY-YLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHH-HTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcc
Confidence            7999999999999987 4555   7999999999999999999999999998887 57999999999999999998544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.85  E-value=2.5e-09  Score=103.41  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=83.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA------ESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda------eAL~nLG~~L~e  481 (536)
                      +++++|+.+|++|+++.|..      ..++.++|.++. ..|++++|+.+|++++++.|++.      .++.++|.++..
T Consensus       129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~  207 (307)
T 2ifu_A          129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV-RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH  207 (307)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence            89999999999999998765      578999999887 69999999999999999977653      477788877765


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHcCCC
Q 009385          482 VRNDLWAAEETFLEAISADPTNSYY-----AANYANFLWNTGGE  520 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdNpea-----l~NyA~~L~elGr~  520 (536)
                       .|++++|+.+|++++ ++|+....     +..++..+ ..|+.
T Consensus       208 -~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~  248 (307)
T 2ifu_A          208 -RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDE  248 (307)
T ss_dssp             -TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCH
T ss_pred             -cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCH
Confidence             469999999999999 99999743     33444433 45554

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.82  E-value=2.7e-09  Score=97.93  Aligned_cols=109  Identities=13%  Similarity=0.121  Sum_probs=93.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      +++++|+.+|++++++.+...      .++.++|.++. ..|++++|+++|++++++.|..      ..++..+|.++..
T Consensus       197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  275 (338)
T 3ro2_A          197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  275 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence            899999999999999866543      38899998887 6899999999999999998776      7889999998876


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCcccc
Q 009385          482 VRNDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr~E~cl  524 (536)
                      . |++++|+.+|++|+++.|..      ..++.++|.++...|+.+++.
T Consensus       276 ~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          276 L-QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             h-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            4 79999999999999986643      447889999999999876543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.80  E-value=4.8e-08  Score=98.32  Aligned_cols=103  Identities=8%  Similarity=-0.001  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHh---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFL----YIVA---HDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLW  487 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL----~e~~---GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~e  487 (536)
                      ++++++.++.++|..+|++..+|+..+.++    . ..   ++++++.+++.++++.+|.|..+|+..+.++... ++++
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~-~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l-~~~~  161 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME-LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF-DLHN  161 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH-HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCTT
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH-hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cccC
Confidence            777777777777777777777777777666    3 23   5677777777777777777777777777766554 4666


Q ss_pred             --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          488 --AAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       488 --EAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                        +++++++++++.||.|..++++.+.++...|+
T Consensus       162 ~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              77777777777777777777777777766654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.79  E-value=6.6e-09  Score=85.24  Aligned_cols=71  Identities=15%  Similarity=0.021  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          452 DRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       452 deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      ++|+.+|+++++.+|+++.+++++|.++... |++++|+.+|++|++++|+++.++.++|.++...|+.+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   72 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEH-EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA   72 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            3688999999999999999999999988774 6999999999999999999999999999999999987654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.79  E-value=8.9e-09  Score=98.22  Aligned_cols=110  Identities=13%  Similarity=0.040  Sum_probs=88.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLL------LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eA------L~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      +++++|+.+|+++++..+.++..      +.++|.++. ..+++++|+.+|++|+.+.+..      ..+++++|.++..
T Consensus        89 ~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  167 (293)
T 3u3w_A           89 KRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE  167 (293)
T ss_dssp             TCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence            89999999999999998887762      334666555 5679999999999999976543      3479999998887


Q ss_pred             hcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          482 VRNDLWAAEETFLEAISA-------DPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       482 ~~GD~eEAee~feKALeL-------DPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      . |++++|+.+|++|++.       .+..+.+++|+|.++..+|+++++..
T Consensus       168 ~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~  217 (293)
T 3u3w_A          168 N-GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY  217 (293)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             c-CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5 6999999999999953       12234578999999999999876643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.79  E-value=3.1e-08  Score=106.79  Aligned_cols=102  Identities=13%  Similarity=-0.005  Sum_probs=94.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD----------YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN  484 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD----------~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G  484 (536)
                      ..++|+++|.++|+++|++..+|++.+.++. ..++          +++|.++++++++.+|.+..+|+..+.++.. .+
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~-~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQ-HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHH-hcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cc
Confidence            4468999999999999999999999999887 4666          9999999999999999999999999998876 46


Q ss_pred             --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          485 --DLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       485 --D~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                        ++++|++++++++++||.|..++.+.++++..+|
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~  157 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAA  157 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcC
Confidence              6799999999999999999999999999999999

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.78  E-value=4.3e-09  Score=102.30  Aligned_cols=108  Identities=15%  Similarity=0.157  Sum_probs=78.2

Q ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV------EPPDAESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeL------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL------DPddaeAL~nLG~~L~e  481 (536)
                      |++++|+.+|++++++      +|....++.++|.++. ..|++++|+.+|++++++      .|..+.++.++|.++..
T Consensus       100 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A          100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            7788888888888777      5666777777887766 578888888888888877      56667777777777766


Q ss_pred             hcCC-----------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCCccc
Q 009385          482 VRND-----------------LWAAEETFLEAISAD------PTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       482 ~~GD-----------------~eEAee~feKALeLD------PdNpeal~NyA~~L~elGr~E~c  523 (536)
                      . |+                 +++|+.+|++++++.      |..+.++.++|.++...|+.+++
T Consensus       179 ~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  242 (411)
T 4a1s_A          179 K-GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA  242 (411)
T ss_dssp             H-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             c-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            4 47                 777888877777763      23344677777777777776544

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.78  E-value=1e-08  Score=103.98  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIA----------------VEPPDAESFSKYASFLWRVRNDLWAAEETFLEAI  497 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALe----------------LDPddaeAL~nLG~~L~e~~GD~eEAee~feKAL  497 (536)
                      ...+.++|..++ ..|++++|+++|++||+                ++|.++.+++++|.++... |++++|+++|++|+
T Consensus       223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al  300 (370)
T 1ihg_A          223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM-SDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence            466888998888 69999999999999999                8899999999999988875 69999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          498 SADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       498 eLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++|+++.+++++|.+|..+|+++++
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA  326 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQA  326 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHH
Confidence            99999999999999999999997654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.78  E-value=8.2e-09  Score=101.55  Aligned_cols=108  Identities=18%  Similarity=-0.009  Sum_probs=84.3

Q ss_pred             CCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPN-------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP------PDAESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd-------n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP------ddaeAL~nLG~~L~  480 (536)
                      +++++|+.+|++|+++.+.       ...++.++|.++. ..|++++|+++|++|+++.+      ..+.++.++|.++.
T Consensus       155 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  233 (378)
T 3q15_A          155 KQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD  233 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            7888888888888887543       2456778887776 68888899999988888743      12457888888777


Q ss_pred             HhcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          481 RVRNDLWAAEETFLEAIS-----ADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       481 e~~GD~eEAee~feKALe-----LDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .. |++++|+.+|++|++     .+|..+.++.++|.++...|+.+++
T Consensus       234 ~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  280 (378)
T 3q15_A          234 RS-GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA  280 (378)
T ss_dssp             HH-TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HC-CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHH
Confidence            64 688899999998888     7787788888888888888886543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.74  E-value=2.1e-09  Score=112.41  Aligned_cols=89  Identities=19%  Similarity=0.114  Sum_probs=80.3

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN  512 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~  512 (536)
                      .+.++.++|..++ ..|++++|+++|++|++++|+++.+++++|.++... |++++|+++|++|++++|+++.+++++|.
T Consensus         5 ~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            5 RAEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHTTSSSSSSSTT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3455667787777 589999999999999999999999999999988875 69999999999999999999999999999


Q ss_pred             HHHHcCCCccc
Q 009385          513 FLWNTGGEDTC  523 (536)
Q Consensus       513 ~L~elGr~E~c  523 (536)
                      ++..+|+.+++
T Consensus        83 ~~~~~g~~~eA   93 (477)
T 1wao_1           83 SNMALGKFRAA   93 (477)
T ss_dssp             HHHHHTCHHHH
T ss_pred             HHHHcCCHHHH
Confidence            99999987654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.73  E-value=1e-07  Score=95.83  Aligned_cols=106  Identities=9%  Similarity=0.055  Sum_probs=98.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYD--RAEEYFKRAIAVEPPDAESFSKYASFLWRVRND------  485 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~d--eAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD------  485 (536)
                      +++.+++.++.++|+.+|+|..+|.+.+.++. ..++++  ++.++++++|+.||.|..||++.+.++... ++      
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l-~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK-KHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS-GGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-cccchhhh
Confidence            57899999999999999999999999998877 589888  999999999999999999999999888764 45      


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          486 LWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       486 ~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +++++++++++|.++|+|..++++++.++...|+..
T Consensus       202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~  237 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSI  237 (306)
T ss_dssp             HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCCh
Confidence            999999999999999999999999999999999753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.71  E-value=7.8e-08  Score=83.88  Aligned_cols=80  Identities=14%  Similarity=0.065  Sum_probs=40.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV----AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RNDLW  487 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~----~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD~e  487 (536)
                      ..++|+.+|++|.+.  +++.+++++|.++. .    .+|+++|.++|++|.+.  +++.++++||.++..-   .+|++
T Consensus        40 ~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~  114 (138)
T 1klx_A           40 NKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  114 (138)
T ss_dssp             CHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHH
Confidence            444455555555554  44555555554443 2    34555555555555544  4555555555544430   23555


Q ss_pred             HHHHHHHHHHHh
Q 009385          488 AAEETFLEAISA  499 (536)
Q Consensus       488 EAee~feKALeL  499 (536)
                      +|+.+|++|.+.
T Consensus       115 ~A~~~~~~Aa~~  126 (138)
T 1klx_A          115 QAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
Confidence            555555555554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.71  E-value=1.8e-07  Score=81.51  Aligned_cols=100  Identities=10%  Similarity=0.042  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD~eEAe  490 (536)
                      +++++|+.+|++|.+.......    +|.++. ..+..++|.++|++|.+.  +++.++++||.++..-   .+|+++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5899999999999998754444    887766 567899999999999987  8999999999988761   36999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCcc
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWN----TGGEDT  522 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~e----lGr~E~  522 (536)
                      .+|++|.+.  .++.+.+++|.+|..    .++.++
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~  115 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQ  115 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHH
Confidence            999999987  789999999999988    555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.70  E-value=4e-07  Score=93.08  Aligned_cols=146  Identities=12%  Similarity=0.002  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCcccc-------------CC----------HHHHHHHHHH
Q 009385          369 EEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDY-------------AD----------YFRTELLYQT  425 (536)
Q Consensus       369 e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~-------------gd----------yeeAee~YqK  425 (536)
                      +.++..|...++..-..-+ ....++++++-....+  .+.|++|             +.          +.+++.++.+
T Consensus        23 ~~ki~~y~~~~~~~~~~~~-~~e~s~eaL~~t~~~L--~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~   99 (331)
T 3dss_A           23 EQKLKLYQSATQAVFQKRQ-AGELDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLES   99 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-TTCCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHH
Confidence            4556666665555433222 3356667766444444  5556533             12          6889999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCC
Q 009385          426 GLAQEPNDPLLLANYAQFLYIVAH--DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND-LWAAEETFLEAISADPT  502 (536)
Q Consensus       426 ALeLdPdn~eAL~NLA~lL~e~~G--D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD-~eEAee~feKALeLDPd  502 (536)
                      +|..+|++..+|++.+.++. ..+  +++++..++.++++.||.|..+|+..+.++... ++ +++++++++++++.+|.
T Consensus       100 ~L~~~PKny~aW~hR~wlL~-~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l-~~~~~eel~~~~~~I~~~p~  177 (331)
T 3dss_A          100 CLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVAPAEELAFTDSLITRNFS  177 (331)
T ss_dssp             HHHHCTTCHHHHHHHHHHHH-HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCSC
T ss_pred             HHHhCCCCHHHHHHHHHHHh-ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHCCC
Confidence            99999999999999998877 567  599999999999999999999999999988765 46 69999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCC
Q 009385          503 NSYYAANYANFLWNTGG  519 (536)
Q Consensus       503 Npeal~NyA~~L~elGr  519 (536)
                      |..++++.+.++..++.
T Consensus       178 N~SAW~~R~~ll~~l~~  194 (331)
T 3dss_A          178 NYSSWHYRSCLLPQLHP  194 (331)
T ss_dssp             CHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHhhh
Confidence            99999999999988743

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.70  E-value=2e-08  Score=93.30  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          448 AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRND----------LWAAEETFLEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       448 ~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD----------~eEAee~feKALeLDPdNpeal~NyA~~L~el  517 (536)
                      .+.+++|++.|++|++++|+++++|+++|.++.... +          +++|+..|++||+++|+++.+++++|.+|..+
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~-~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELS-QFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-ccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999888754 4          56999999999999999999999999999987


Q ss_pred             C
Q 009385          518 G  518 (536)
Q Consensus       518 G  518 (536)
                      |
T Consensus        94 g   94 (158)
T 1zu2_A           94 A   94 (158)
T ss_dssp             H
T ss_pred             c
Confidence            6

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.70  E-value=3.7e-08  Score=100.15  Aligned_cols=89  Identities=13%  Similarity=0.178  Sum_probs=80.5

Q ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCC
Q 009385          414 ADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIV-----AHDYDRAEEYFKRAIAVEPPD-AESFSKYASFLWRVRND  485 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~-----~GD~deAEe~FeKALeLDPdd-aeAL~nLG~~L~e~~GD  485 (536)
                      +...+|...+++||++||+  +..+|.-+|.+|+ .     -|+.++|+++|+|||+++|+. .++++.||.++....+|
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~-~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYA-AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH-hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence            4677899999999999999  7789999998776 4     399999999999999999985 99999999999876679


Q ss_pred             HHHHHHHHHHHHHhCCCC
Q 009385          486 LWAAEETFLEAISADPTN  503 (536)
Q Consensus       486 ~eEAee~feKALeLDPdN  503 (536)
                      +++|++++++|++++|..
T Consensus       256 ~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          256 RAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHHcCCCCC
Confidence            999999999999998873

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.68  E-value=4e-08  Score=95.25  Aligned_cols=108  Identities=17%  Similarity=0.153  Sum_probs=90.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHh
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL-----LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA------ESFSKYASFLWRV  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e-----AL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda------eAL~nLG~~L~e~  482 (536)
                      |++++|+.++++++...|.+..     ++.++|.++. ..|++++|+.+|++++++.|...      .++.++|.++.. 
T Consensus        28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-  105 (373)
T 1hz4_A           28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-  105 (373)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            8999999999999999886632     6778888777 68999999999999999876543      347789988876 


Q ss_pred             cCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCCccc
Q 009385          483 RNDLWAAEETFLEAISAD--------PTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       483 ~GD~eEAee~feKALeLD--------PdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .|++++|+.+|++++++.        |....++.++|.+++..|+.+++
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  154 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence            479999999999999985        33456788899999999987644

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.67  E-value=9.3e-08  Score=88.55  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH---DYDRAEEYFKRAIAVE-P-PDAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G---D~deAEe~FeKALeLD-P-ddaeAL~nLG~~L~e~~GD~eE  488 (536)
                      +....+++.|.+++..+|.+.++.++||..|. ..+   +.++++.+|+..++.+ | ++.+.++++|..+++. ++|++
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv-~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl-~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL-KEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-SCHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc-cCHHH
Confidence            57889999999999999999999999998887 455   7889999999999999 8 6799999999999875 69999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHH
Q 009385          489 AEETFLEAISADPTNSYYAANYA  511 (536)
Q Consensus       489 Aee~feKALeLDPdNpeal~NyA  511 (536)
                      |+.+++++++++|+|.++..-.-
T Consensus        90 A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHH
Confidence            99999999999999998865433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.66  E-value=4.3e-08  Score=95.04  Aligned_cols=108  Identities=18%  Similarity=0.103  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--------PPDAESFSKYASFL  479 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~------eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--------PddaeAL~nLG~~L  479 (536)
                      |++++|+.+|++++.+.|...      .++.++|.++. ..|++++|+.+|++++++.        |....++.++|.++
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            899999999999999866543      34678898877 6999999999999999976        44567788899988


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCCccc
Q 009385          480 WRVRNDLWAAEETFLEAISADPTN-----SYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       480 ~e~~GD~eEAee~feKALeLDPdN-----peal~NyA~~L~elGr~E~c  523 (536)
                      +.. |++++|+.+|++++++.|..     ...+.++|.++...|+.+++
T Consensus       146 ~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          146 WAW-ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             HHT-TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHh-cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            875 79999999999999998753     45688899999999987654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.62  E-value=1.9e-07  Score=96.33  Aligned_cols=106  Identities=11%  Similarity=-0.009  Sum_probs=97.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-CHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN-DLWAAEET  492 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G-D~eEAee~  492 (536)
                      ..++|++++.++|.++|++..+|+..+.++. ..+ ++++++++++++|..+|.+..+|+..+.++....+ ++++++++
T Consensus        69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           69 KSERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            4568999999999999999999999999887 577 69999999999999999999999999999887635 89999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +.++++++|.|..++.+.++++...|+.+
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999998888655

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.60  E-value=1.1e-07  Score=97.87  Aligned_cols=95  Identities=18%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLY--IVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RNDLWA  488 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~--e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD~eE  488 (536)
                      +++++|+.+|++|+   |+++.+++++|.+++  ...+|+++|+.+|++|++  ++++.++++||.++...   ..|+++
T Consensus       231 ~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~  305 (452)
T 3e4b_A          231 PDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA--ADQPRAELLLGKLYYEGKWVPADAKA  305 (452)
T ss_dssp             CCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            57778888888877   778888888887644  346788888888888774  44778888888766531   027888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          489 AEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       489 Aee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      |+.+|++|+   |+++.+++++|.+|..
T Consensus       306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          306 AEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            888888887   7788888888876655

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.59  E-value=2.5e-08  Score=100.19  Aligned_cols=94  Identities=10%  Similarity=-0.167  Sum_probs=69.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhcCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND--PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE--PP-DAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn--~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD--Pd-daeAL~nLG~~L~e~~GD~eE  488 (536)
                      +++++|+.+|++++...+..  ..+++++|.++. ..|++++|+.+|++++.-.  |. .+++++++|.+|..+ |+.++
T Consensus       149 ~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~l-Gr~de  226 (282)
T 4f3v_A          149 ERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQ-GNESA  226 (282)
T ss_dssp             TCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHH-TCHHH
T ss_pred             CCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHc-CCHHH
Confidence            78888888888776643221  347788887776 5888888888888887544  55 567888888877765 58888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHH
Q 009385          489 AEETFLEAISADPTNSYYAANY  510 (536)
Q Consensus       489 Aee~feKALeLDPdNpeal~Ny  510 (536)
                      |...|+++++.+|+ +.+...+
T Consensus       227 A~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          227 AVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHhcCCc-HHHHHHH
Confidence            88888888888888 6654443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.58  E-value=1.8e-07  Score=96.38  Aligned_cols=95  Identities=16%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cC
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-----DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RN  484 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-----D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~G  484 (536)
                      .+++++|+.+|++|++.  +++.+++++|.++.  .|     |+++|+++|++|+   |+++.++++||.++...   ..
T Consensus       264 ~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~--~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~  336 (452)
T 3e4b_A          264 LGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY--EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKV  336 (452)
T ss_dssp             GCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH--HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSC
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH--cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCc
Confidence            47999999999999865  48999999997765  46     9999999999998   99999999999876542   23


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          485 DLWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       485 D~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      |+++|+.+|++|.+  ++++.+.+++|.+|..
T Consensus       337 d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          337 YPQKALDHLLTAAR--NGQNSADFAIAQLFSQ  366 (452)
T ss_dssp             CHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence            89999999999976  5677888899997754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.58  E-value=1.9e-07  Score=98.14  Aligned_cols=95  Identities=13%  Similarity=0.152  Sum_probs=80.7

Q ss_pred             ccCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQ-----EPNDPL---LLANYAQFLYIVAHDYDRAEEYFKRAIAV-----EPPDA---ESFSKY  475 (536)
Q Consensus       412 d~gdyeeAee~YqKALeL-----dPdn~e---AL~NLA~lL~e~~GD~deAEe~FeKALeL-----DPdda---eAL~nL  475 (536)
                      .+|+|++|+.+|+++|++     .|+|+.   .+.|+|.+|. .+|+|++|+.+|+++|++     .|+|+   ..+++|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            568999999999999996     577764   5788998887 699999999999999986     46666   468999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 009385          476 ASFLWRVRNDLWAAEETFLEAISA-----DPTNSYYAA  508 (536)
Q Consensus       476 G~~L~e~~GD~eEAee~feKALeL-----DPdNpeal~  508 (536)
                      |.+++.+ |++++|+.+|++|+++     -|++|....
T Consensus       389 a~~~~~q-g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          389 GRLYMGL-ENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHhc-cCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            9988875 6999999999999985     688887644

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.57  E-value=5.4e-07  Score=75.18  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVE-------PPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSY  505 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLD-------PddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpe  505 (536)
                      .+.-.+.+|..++ ..++|+.|+..|++|++..       +..++++.+||.+++.. |++++|+.++++|++++|+++.
T Consensus         4 sa~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            4 TAEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCCHH
Confidence            3456678999888 6899999999999999974       45688999999998875 6999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 009385          506 YAANYANFLW  515 (536)
Q Consensus       506 al~NyA~~L~  515 (536)
                      ++.|++.+-.
T Consensus        82 ~~~n~~~~~~   91 (104)
T 2v5f_A           82 ANGNLKYFEY   91 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHhhHHHHHH
Confidence            9998885443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.57  E-value=4.2e-07  Score=92.87  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH---DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G---D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD~e  487 (536)
                      +++++|+.+|++|++.  +++.+++++|.++. ..|   ++++|+++|++|++.  +++.++++||.++...   .++++
T Consensus       310 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~-~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~  384 (490)
T 2xm6_A          310 KNREQAISWYTKSAEQ--GDATAQANLGAIYF-RLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ  384 (490)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHH-hCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence            7899999999999886  56889999998776 335   889999999999987  7899999999887651   35899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCCcc
Q 009385          488 AAEETFLEAISADPTNSYYAANYANFLWN----TGGEDT  522 (536)
Q Consensus       488 EAee~feKALeLDPdNpeal~NyA~~L~e----lGr~E~  522 (536)
                      +|+.+|++|++.  +++.+++++|.++..    .++.++
T Consensus       385 ~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~  421 (490)
T 2xm6_A          385 QAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQ  421 (490)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             HHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence            999999999886  468899999999987    565543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.57  E-value=1.6e-07  Score=92.35  Aligned_cols=105  Identities=14%  Similarity=0.008  Sum_probs=84.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPN------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIA-----VEPPDAESFSKYASFLWR  481 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPd------n~eAL~NLA~lL~e~~GD~deAEe~FeKALe-----LDPddaeAL~nLG~~L~e  481 (536)
                      .|++++|+.+|++|+++.+.      ...++.++|.++. ..|++++|+.+|++|++     .+|..+.++.++|.++..
T Consensus       195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            38999999999999997431      2467889998887 69999999999999999     889999999999999887


Q ss_pred             hcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC
Q 009385          482 VRNDLWAAEETFLEAISADPT-----NSYYAANYANFLWNTGG  519 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPd-----Npeal~NyA~~L~elGr  519 (536)
                      . |++++|+.+|++|+++.+.     ....+..++.++...|+
T Consensus       274 ~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~  315 (378)
T 3q15_A          274 A-GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD  315 (378)
T ss_dssp             T-TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred             C-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence            5 6999999999999998443     23333444444444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.56  E-value=2.2e-07  Score=76.26  Aligned_cols=87  Identities=9%  Similarity=0.094  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP------DAESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd------daeAL~nLG~~L~e  481 (536)
                      +++++|+.+|++++++.+..      ..++.++|.++. ..|++++|+++|++++++.+.      .+.++.++|.++..
T Consensus        63 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           63 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence            89999999999999987654      678889998887 699999999999999988432      25688899998877


Q ss_pred             hcCCHHHHHHHHHHHHHhCCC
Q 009385          482 VRNDLWAAEETFLEAISADPT  502 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPd  502 (536)
                      . |++++|+++|++|+++...
T Consensus       142 ~-g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          142 L-GNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             H-TCHHHHHHHHHHHHHHHTT
T ss_pred             c-cCHHHHHHHHHHHHHHHHH
Confidence            5 6999999999999997554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.55  E-value=1.3e-07  Score=100.78  Aligned_cols=106  Identities=14%  Similarity=0.141  Sum_probs=87.3

Q ss_pred             ccCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQ-----EPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAV-----EPPDA---ESFSKY  475 (536)
Q Consensus       412 d~gdyeeAee~YqKALeL-----dPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeL-----DPdda---eAL~nL  475 (536)
                      ..|+|++|+.+|+++|++     .|+|+   .++.|+|.+|. .+|+|++|+.+|+++|++     .|+|+   ..+++|
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  399 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS-YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA  399 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            348999999999999987     46665   56888998877 699999999999999986     47776   468899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHcCC
Q 009385          476 ASFLWRVRNDLWAAEETFLEAISA-----DPTNSYY---AANYANFLWNTGG  519 (536)
Q Consensus       476 G~~L~e~~GD~eEAee~feKALeL-----DPdNpea---l~NyA~~L~elGr  519 (536)
                      |.+++.+ |++++|+.+|++|+++     -|++|..   +.+++.++.++|.
T Consensus       400 a~~~~~~-G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          400 GLTNWHA-GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHC-CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence            9988875 7999999999999985     7888865   4567777766654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.53  E-value=7.5e-07  Score=91.05  Aligned_cols=104  Identities=13%  Similarity=0.013  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-
Q 009385          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHD----------YDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRN-  484 (536)
Q Consensus       416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD----------~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~G-  484 (536)
                      .++|+.++.++|.++|++..+|+..+.++. ..++          ++++..++.++|..+|.+..+|+..+.++...+. 
T Consensus        46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~-~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           46 DESVLELTSQILGANPDFATLWNCRREVLQ-HLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             SHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHH-HhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence            347999999999999999999999998876 3444          7899999999999999999999999998876542 


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          485 DLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       485 D~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      +++++++++.+++++||.|..++.+.++++...|..
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~  160 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVA  160 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcC
Confidence            589999999999999999999999999999999873

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.53  E-value=7.9e-07  Score=90.89  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=66.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCC
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV----AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RND  485 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~----~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD  485 (536)
                      .+++++|+.+|++|++.  +++.+++++|.++. .    .+++++|+++|++|++.  +++.++++||.++...   .++
T Consensus        92 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d  166 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALK--GLPQAQQNLGVMYH-EGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRD  166 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence            46777777777777664  46777777776655 4    46777777777777654  5677777777766541   347


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          486 LWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       486 ~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      +++|+++|++|++.  +++.++.++|.++..
T Consensus       167 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          167 YVMAREWYSKAAEQ--GNVWSCNQLGYMYSR  195 (490)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence            77777777777765  467777777777766

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.46  E-value=9.2e-07  Score=92.28  Aligned_cols=106  Identities=9%  Similarity=-0.061  Sum_probs=57.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HhC--C---HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhc
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--VAH--D---YDRAEEYFK--RAIAVEPPDAESFSKYASFLWRVR  483 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--~~G--D---~deAEe~Fe--KALeLDPddaeAL~nLG~~L~e~~  483 (536)
                      ..++.+|+.+|++|++++|+++.++..++..+..  ..+  .   .......++  .++..+|.++.++..++..++. .
T Consensus       212 ~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-~  290 (372)
T 3ly7_A          212 DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-K  290 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-C
Confidence            3678999999999999999999999876654321  011  0   000001111  1223445555555555544432 2


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          484 NDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       484 GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      |++++|+.++++|++++|+ ..++..+|.++...|+.
T Consensus       291 gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~  326 (372)
T 3ly7_A          291 GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMN  326 (372)
T ss_dssp             TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCH
Confidence            4555555555555555543 34444555555555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.44  E-value=8.5e-07  Score=91.47  Aligned_cols=104  Identities=12%  Similarity=-0.003  Sum_probs=95.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHH------
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH-DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLW------  487 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G-D~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~e------  487 (536)
                      .+++++.++.++|..+|++..+|++.+.++....+ +++++++++.++|+.+|.|..+|+..+.++...+ +++      
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~-~~~~~~~~~  182 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS-TLGRISEAQ  182 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH-HTTCCCHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-cccccchhh
Confidence            69999999999999999999999999988874327 8999999999999999999999999999887654 565      


Q ss_pred             --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          488 --AAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       488 --EAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                        +++++++++++.+|.|..++++.+.++..+|+
T Consensus       183 ~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              99999999999999999999999999999886

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.38  E-value=1.1e-06  Score=91.92  Aligned_cols=103  Identities=10%  Similarity=-0.083  Sum_probs=84.6

Q ss_pred             cCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHH
Q 009385          413 YADYFRTELLYQTGLAQ-----EPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAV-----EPPDAE---SFSKYA  476 (536)
Q Consensus       413 ~gdyeeAee~YqKALeL-----dPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeL-----DPddae---AL~nLG  476 (536)
                      .++|++|+..|+++|++     .|+|+   .++.|+|.+|. .+|+|++|+.+++++|++     .|+|+.   .+++||
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~-~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa  378 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI-NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG  378 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence            37999999999999976     46776   56788888877 699999999999999986     477764   688999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHc
Q 009385          477 SFLWRVRNDLWAAEETFLEAISA-----DPTNSYY---AANYANFLWNT  517 (536)
Q Consensus       477 ~~L~e~~GD~eEAee~feKALeL-----DPdNpea---l~NyA~~L~el  517 (536)
                      .+++.+ |++++|+.+|++|+++     -|++|..   +.+++.++.++
T Consensus       379 ~~~~~~-g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          379 KLQLHQ-GMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            988875 6999999999999985     7888875   45676666543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.37  E-value=5.2e-07  Score=73.58  Aligned_cols=59  Identities=15%  Similarity=0.075  Sum_probs=52.4

Q ss_pred             hCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          464 VEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       464 LDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      .+|+++.+++++|.+++.. |++++|+.+|++|++++|+++.++.++|.++..+|+.+++
T Consensus         2 ~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKH-DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            4899999999999988874 6999999999999999999999999999999999997654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.27  E-value=2.3e-06  Score=85.91  Aligned_cols=109  Identities=12%  Similarity=-0.057  Sum_probs=93.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHhcCCHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP-D-AESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd-d-aeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .|+|++|.+.|..++..+|++. +++.+|.+++ ..+++++|+.+|++++...++ . ..+++++|.++... |++++|+
T Consensus       115 ~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L-G~~~eAl  191 (282)
T 4f3v_A          115 QGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL-ALFTEAE  191 (282)
T ss_dssp             HTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC-CCHHHHH
Confidence            3899999999999999999999 9999998877 699999999999999875322 2 45899999988765 6999999


Q ss_pred             HHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCCcccc
Q 009385          491 ETFLEAISAD--PT-NSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       491 e~feKALeLD--Pd-Npeal~NyA~~L~elGr~E~cl  524 (536)
                      .+|++++...  |. .+.+++++|.+|.++|+.+++.
T Consensus       192 ~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~  228 (282)
T 4f3v_A          192 RRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV  228 (282)
T ss_dssp             HHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999654  65 6679999999999999986543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.24  E-value=2.5e-06  Score=86.86  Aligned_cols=92  Identities=13%  Similarity=0.035  Sum_probs=76.2

Q ss_pred             CCCCHHHHHHHHHHHHHH----hC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh----cCCHHHHHHHH
Q 009385          430 EPNDPLLLANYAQFLYIV----AH------DYDRAEEYFKRAIAVEPP--DAESFSKYASFLWRV----RNDLWAAEETF  493 (536)
Q Consensus       430 dPdn~eAL~NLA~lL~e~----~G------D~deAEe~FeKALeLDPd--daeAL~nLG~~L~e~----~GD~eEAee~f  493 (536)
                      +|+++++++..|......    .+      ...+|+..++||+++||+  +..+|..||.+++..    .|+.++|+++|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            577788888877754321    12      468999999999999999  777999999887763    58999999999


Q ss_pred             HHHHHhCCCC-HHHHHHHHHHHHHc-CCCc
Q 009385          494 LEAISADPTN-SYYAANYANFLWNT-GGED  521 (536)
Q Consensus       494 eKALeLDPdN-peal~NyA~~L~el-Gr~E  521 (536)
                      ++|++++|+. ...++.||.+|... |+.+
T Consensus       228 erAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            9999999975 99999999999885 7654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.23  E-value=5e-06  Score=69.29  Aligned_cols=63  Identities=24%  Similarity=0.332  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQE-------PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLd-------Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      ++|.+|+.+|++|++..       +..+.++.+||.+++ ..|++++|..++++|++++|+|..++.+++.
T Consensus        19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~   88 (104)
T 2v5f_A           19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (104)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhHHH
Confidence            89999999999999974       456889999999988 6999999999999999999999999999984

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.93  E-value=6.4e-06  Score=80.78  Aligned_cols=109  Identities=12%  Similarity=0.090  Sum_probs=82.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPL-----------------LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE------  470 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~e-----------------AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae------  470 (536)
                      |+|++|++.|+++++.+|+...                 ++.++|.++. ..|++++|.++|++++.+.+....      
T Consensus        18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   96 (434)
T 4b4t_Q           18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-TMGAKDKLREFIPHSTEYMMQFAKSKTVKV   96 (434)
T ss_dssp             TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence            7899999999999999887643                 5788898877 689999999999999887766533      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCcccc
Q 009385          471 SFSKYASFLWRVRNDLWAAEETFLEAISADPT------NSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       471 AL~nLG~~L~e~~GD~eEAee~feKALeLDPd------Npeal~NyA~~L~elGr~E~cl  524 (536)
                      +...+|.++. ..|++++|+.++++++...+.      -...+.++|.++...|+++++.
T Consensus        97 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (434)
T 4b4t_Q           97 LKTLIEKFEQ-VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL  155 (434)
T ss_dssp             HHHHHHHHCS-CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence            3445565443 356899999999998876432      2456788899999998876554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.85  E-value=2.3e-05  Score=65.35  Aligned_cols=59  Identities=14%  Similarity=0.041  Sum_probs=53.2

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          465 EPPDAESFSKYASFLWRVRND--LWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       465 DPddaeAL~nLG~~L~e~~GD--~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +|+|++++..+|.+++...+.  .++|+.++++|+++||+++.++..+|..+++.|+++++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~A   62 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEA   62 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHH
Confidence            799999999999999765432  79999999999999999999999999999999998644

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.80  E-value=5.7e-05  Score=80.58  Aligned_cols=87  Identities=10%  Similarity=0.034  Sum_probs=72.1

Q ss_pred             ccCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCHHH---HHHH
Q 009385          412 DYADYFRTELLYQTGLAQ-----EPNDP---LLLANYAQFLYIVAHDYDRAEEYFKRAIAV-----EPPDAES---FSKY  475 (536)
Q Consensus       412 d~gdyeeAee~YqKALeL-----dPdn~---eAL~NLA~lL~e~~GD~deAEe~FeKALeL-----DPddaeA---L~nL  475 (536)
                      +.|+|++|+.+|+++|++     .|+++   ..++|+|.+|. .+|++++|+.+|++|+++     .|+|+..   +.++
T Consensus       363 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l  441 (490)
T 3n71_A          363 YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR  441 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            349999999999999987     46666   46889998887 699999999999999985     5888654   5677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhC
Q 009385          476 ASFLWRVRNDLWAAEETFLEAISAD  500 (536)
Q Consensus       476 G~~L~e~~GD~eEAee~feKALeLD  500 (536)
                      +.++.+++ .+++|+..|++|.+..
T Consensus       442 ~~~~~e~~-~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          442 MQTEMELR-MFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            77776654 8999999999998754

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.77  E-value=0.00011  Score=66.17  Aligned_cols=93  Identities=14%  Similarity=0.099  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH---DYDRAEEYFKRAIAVE-P-PDAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G---D~deAEe~FeKALeLD-P-ddaeAL~nLG~~L~e~~GD~eE  488 (536)
                      .....+++.|.+++..++....+.++||..|. ...   +..+++..++..++.+ | ..-+.++.||..+++. |+|++
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv-~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl-g~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLV-RTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL-KEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHT-TSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT-TCHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh-hhHHH
Confidence            46778889999999999999999999998776 344   3455999999999987 6 5678999999999886 69999


Q ss_pred             HHHHHHHHHHhCCCCHHHHH
Q 009385          489 AEETFLEAISADPTNSYYAA  508 (536)
Q Consensus       489 Aee~feKALeLDPdNpeal~  508 (536)
                      |..+++..|+++|+|.++..
T Consensus        93 A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999998754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.77  E-value=0.00012  Score=67.82  Aligned_cols=101  Identities=14%  Similarity=0.149  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHH
Q 009385          369 EEELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQE-P-NDPLLLANYAQFLYI  446 (536)
Q Consensus       369 e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeLd-P-dn~eAL~NLA~lL~e  446 (536)
                      .+++.-+..-..++..  . + ..+.++.=++.--+   +...+..++.+++.+++..++.+ | ++.++++++|..++ 
T Consensus        11 ~~~l~~~~~~y~~e~~--~-~-~~~~~~~F~ya~~L---v~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-   82 (152)
T 1pc2_A           11 VEDLLKFEKKFQSEKA--A-G-SVSKSTQFEYAWCL---VRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-   82 (152)
T ss_dssp             HHHHHHHHHHHHHHHH--T-T-CCCHHHHHHHHHHH---HTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHc--c-C-CCcHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-
Confidence            3455555555555432  1 2 24555544443322   22233468899999999999999 8 67999999999988 


Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      ..++|++|.++++++|+++|+|..+....-.
T Consensus        83 kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           83 RLKEYEKALKYVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            6999999999999999999999999776554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.72  E-value=9.1e-05  Score=75.34  Aligned_cols=105  Identities=11%  Similarity=0.054  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHh-cC
Q 009385          414 ADYFRTELLYQTGLAQEP--NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP----DAESFSKY--ASFLWRV-RN  484 (536)
Q Consensus       414 gdyeeAee~YqKALeLdP--dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd----daeAL~nL--G~~L~e~-~G  484 (536)
                      |++++|++++.++|..+|  ++.+++.-+++++. ..|+.+.|.+.+++..+.+|+    +-.++.+|  |++.... ++
T Consensus       114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~  192 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE  192 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence            899999999999999997  88999998998877 699999999999999999994    23333444  4334333 23


Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCcc
Q 009385          485 DLWAAEETFLEAISADPT--NSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       485 D~eEAee~feKALeLDPd--Npeal~NyA~~L~elGr~E~  522 (536)
                      ++.+|..+|+++....|+  .+..++|   ++..+|+.++
T Consensus       193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~e  229 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAE  229 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHH
T ss_pred             cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHH
Confidence            899999999999888887  4556666   6888888654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.68  E-value=0.00012  Score=81.17  Aligned_cols=105  Identities=19%  Similarity=0.147  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAE-EYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAE-e~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ..++....|++||...|.++.+|+.||.++. ..|+.++|. ..|++|+...|.+...+..++.+... .|++++|.+.|
T Consensus       324 ~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iy  401 (679)
T 4e6h_A          324 HKARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTI  401 (679)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHH
Confidence            3557788999999999999999999999887 578989996 99999999999999999999987665 57999999999


Q ss_pred             HHHHHh-----------CCC-----------CHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISA-----------DPT-----------NSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeL-----------DPd-----------Npeal~NyA~~L~elGr~E  521 (536)
                      ++++..           .|.           .+.++..|+.+..+.|+.+
T Consensus       402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~  451 (679)
T 4e6h_A          402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA  451 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence            999985           253           3457888888888877654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.68  E-value=4.1e-05  Score=80.47  Aligned_cols=78  Identities=6%  Similarity=-0.115  Sum_probs=66.6

Q ss_pred             hCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHH
Q 009385          448 AHDYDRAEEYFKRAIAV-----EPPDA---ESFSKYASFLWRVRNDLWAAEETFLEAISA-----DPTNSYY---AANYA  511 (536)
Q Consensus       448 ~GD~deAEe~FeKALeL-----DPdda---eAL~nLG~~L~e~~GD~eEAee~feKALeL-----DPdNpea---l~NyA  511 (536)
                      .|+|++|+..|+++|++     .|+|+   ..++++|.++..+ |+|++|+.+|++++++     -|++|..   +.|+|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            57999999999999995     57876   4578999988775 7999999999999975     6777764   88999


Q ss_pred             HHHHHcCCCccccCC
Q 009385          512 NFLWNTGGEDTCFPL  526 (536)
Q Consensus       512 ~~L~elGr~E~clpl  526 (536)
                      .+|+.+|+++++.++
T Consensus       390 ~~~~~qg~~~eA~~~  404 (433)
T 3qww_A          390 RLYMGLENKAAGEKA  404 (433)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHhccCHHHHHHH
Confidence            999999999877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.63  E-value=7.2e-05  Score=73.32  Aligned_cols=108  Identities=8%  Similarity=0.037  Sum_probs=85.4

Q ss_pred             cCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEP------NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV------EPPDAESFSKYASFLW  480 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdP------dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeL------DPddaeAL~nLG~~L~  480 (536)
                      .+++++|+.+|++++...+      .-..++.++|.++. ..|++++|..++++++..      .|...+++..+|.++.
T Consensus       108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (434)
T 4b4t_Q          108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH  186 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            3899999999999998743      23678899999887 689999999999999986      4555789999999887


Q ss_pred             HhcCCHHHHHHHHHHHHHhCC---CCH----HHHHHHHHHHHHcCCCcc
Q 009385          481 RVRNDLWAAEETFLEAISADP---TNS----YYAANYANFLWNTGGEDT  522 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDP---dNp----eal~NyA~~L~elGr~E~  522 (536)
                      .. |++++|+.+|++|+.+.+   +.+    .++.++|.++...|++++
T Consensus       187 ~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~  234 (434)
T 4b4t_Q          187 KL-RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT  234 (434)
T ss_dssp             HT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred             Hh-CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence            65 699999999999998754   332    235566666666666544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.63  E-value=0.00012  Score=81.14  Aligned_cols=108  Identities=12%  Similarity=0.159  Sum_probs=84.9

Q ss_pred             cCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CCCCH
Q 009385          413 YADYFRTELLYQTGLAQ-----------EPN-----------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAV-EPPDA  469 (536)
Q Consensus       413 ~gdyeeAee~YqKALeL-----------dPd-----------n~eAL~NLA~lL~e~~GD~deAEe~FeKALeL-DPdda  469 (536)
                      .+++++|...|++++..           .|.           ...+|..|+.+.. ..++.+.|...|.+|++. .+...
T Consensus       391 ~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er-R~~~l~~AR~vf~~A~~~~~~~~~  469 (679)
T 4e6h_A          391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK-RIQGLAASRKIFGKCRRLKKLVTP  469 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHTGGGSCT
T ss_pred             hCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhcCCCCh
Confidence            37889999999999875           253           3557888887766 578889999999999887 44556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          470 ESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       470 eAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      .++...|.+-+..+++++.|...|+++++..|+++.++..|+.+++..|+.+
T Consensus       470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~  521 (679)
T 4e6h_A          470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES  521 (679)
T ss_dssp             HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence            7777777666555556899999999999999999988888999888888754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.61  E-value=0.00015  Score=86.74  Aligned_cols=94  Identities=13%  Similarity=0.046  Sum_probs=71.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|.++++++     +.+.+|++||.++. ..|++++|+.+|.+|     +|+.++.+.|.++.+ .|++++|+++|
T Consensus      1090 ~nldrAiE~Aerv-----n~p~vWsqLAKAql-~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1090 GNLDRAYEFAERC-----NEPAVWSQLAKAQL-QKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYL 1157 (1630)
T ss_pred             hhHHHHHHHHHhc-----CCHHHHHHHHHHHH-hCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            5677777776654     77999999998877 689999999999886     889999999988766 46999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      ++|++.+++. .+-..+|..|.++++.
T Consensus      1158 ~mArk~~~e~-~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A         1158 QMARKKARES-YVETELIFALAKTNRL 1183 (1630)
T ss_pred             HHHHhhcccc-cccHHHHHHHHhhcCH
Confidence            9999887543 2222355555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.50  E-value=0.00043  Score=72.31  Aligned_cols=99  Identities=17%  Similarity=0.038  Sum_probs=64.8

Q ss_pred             HHHHhCCCCHHHHHHHHH--HHHHH--hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--C-----CHHHHHHHH
Q 009385          425 TGLAQEPNDPLLLANYAQ--FLYIV--AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR--N-----DLWAAEETF  493 (536)
Q Consensus       425 KALeLdPdn~eAL~NLA~--lL~e~--~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~--G-----D~eEAee~f  493 (536)
                      ++...-|.++.+|-.|-+  -+...  ..++.+|..+|++|+++||+++.++..++.++....  +     ..+.....+
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~  264 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI  264 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence            455566777666554332  22211  234689999999999999999999998776554211  1     111111222


Q ss_pred             H--HHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          494 L--EAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 e--KALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +  .++.++|.++.++..++..++..|+.+.+
T Consensus       265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A  296 (372)
T 3ly7_A          265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDES  296 (372)
T ss_dssp             HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHH
Confidence            2  23467899999999999999988987654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.46  E-value=0.00026  Score=71.97  Aligned_cols=98  Identities=16%  Similarity=0.071  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009385          419 TELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEP--PDAESFSKYASFLWRVRNDLWAAEETFLEA  496 (536)
Q Consensus       419 Aee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDP--ddaeAL~nLG~~L~e~~GD~eEAee~feKA  496 (536)
                      |+..+++.++..+.+..++..+|.++. ..|++++|++.+.+.|..+|  ++.+++..++.++.. .|+.+.|++.+++.
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            678888888877677777788898887 68999999999999999997  889999999988876 47999999999999


Q ss_pred             HHhCCC----CHHHHHHH--HHHHHHcC
Q 009385          497 ISADPT----NSYYAANY--ANFLWNTG  518 (536)
Q Consensus       497 LeLDPd----Npeal~Ny--A~~L~elG  518 (536)
                      .+.+|+    +-.++.++  +++....|
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g  190 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATN  190 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhC
Confidence            999993    22234444  44466666

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.45  E-value=0.00021  Score=74.71  Aligned_cols=79  Identities=5%  Similarity=-0.069  Sum_probs=66.9

Q ss_pred             HhCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHH
Q 009385          447 VAHDYDRAEEYFKRAIAV-----EPPDA---ESFSKYASFLWRVRNDLWAAEETFLEAISA-----DPTNSYY---AANY  510 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeL-----DPdda---eAL~nLG~~L~e~~GD~eEAee~feKALeL-----DPdNpea---l~Ny  510 (536)
                      .+|++++|++.|+++|++     .|+|+   ..++++|.++..+ |++++|+.++++++++     -|++|..   ++|+
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            479999999999999985     57776   5688899888775 6999999999999975     5778764   8899


Q ss_pred             HHHHHHcCCCccccCC
Q 009385          511 ANFLWNTGGEDTCFPL  526 (536)
Q Consensus       511 A~~L~elGr~E~clpl  526 (536)
                      |.+|+.+|+++++.++
T Consensus       378 a~~~~~~g~~~eA~~~  393 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKN  393 (429)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHH
Confidence            9999999998876654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.31  E-value=0.0014  Score=69.27  Aligned_cols=107  Identities=12%  Similarity=0.177  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------------------HHHHhCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQF----------------------------------------LYIVAHDYDR  453 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~l----------------------------------------L~e~~GD~de  453 (536)
                      ++.++|...|++|+.. |.+..++..|+.+                                        +. ..++.++
T Consensus       227 ~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~-r~~~~~~  304 (493)
T 2uy1_A          227 GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL-KKRGLEL  304 (493)
T ss_dssp             TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHH-HHHCHHH
T ss_pred             CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH-HcCCHHH
Confidence            6778888888888888 8776666555543                                        22 2567899


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          454 AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       454 AEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      |...|++| +..+.....+...|.+-+..+++++.|...|++|++.-|+++..+..|+.++...|+.+.+
T Consensus       305 AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a  373 (493)
T 2uy1_A          305 FRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA  373 (493)
T ss_dssp             HHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999 4444466777777877776666899999999999999999999888899988888876544

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.05  E-value=0.0036  Score=66.06  Aligned_cols=100  Identities=13%  Similarity=0.073  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------
Q 009385          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF-----------------  478 (536)
Q Consensus       416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~-----------------  478 (536)
                      .++....|+++|...|.++.+|.+|+.++. ..|+.++|...|++|+.. |.+...+..++.+                 
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~-~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~  272 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLI-GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMG  272 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence            567888999999999999999999999877 689999999999999999 9997766666543                 


Q ss_pred             -----------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          479 -----------------------LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       479 -----------------------L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                                             +... ++.++|...|++| +..+.....+..+|.+.+..|+
T Consensus       273 ~~~~~~~~~~~~~~~lw~~y~~~~~r~-~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~  334 (493)
T 2uy1_A          273 EAESAEKVFSKELDLLRINHLNYVLKK-RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG  334 (493)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHc-CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC
Confidence                                   1122 3688899999999 4333355566666766666553

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.95  E-value=0.0018  Score=69.10  Aligned_cols=93  Identities=10%  Similarity=0.001  Sum_probs=65.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |+|.+|++.|++|     +++..|.....++. ..|+++.|..+..+ |..+|++..   .+..++ +..|++++|+.++
T Consensus       162 g~yq~AVea~~KA-----~~~~~Wk~v~~aCv-~~~ef~lA~~~~l~-L~~~ad~l~---~lv~~Y-ek~G~~eEai~lL  230 (449)
T 1b89_A          162 GEYQAAVDGARKA-----NSTRTWKEVCFACV-DGKEFRLAQMCGLH-IVVHADELE---ELINYY-QDRGYFEELITML  230 (449)
T ss_dssp             TCHHHHHHHHHHH-----TCHHHHHHHHHHHH-HTTCHHHHHHTTTT-TTTCHHHHH---HHHHHH-HHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHc-----CCchhHHHHHHHHH-HcCcHHHHHHHHHH-HHhCHhhHH---HHHHHH-HHCCCHHHHHHHH
Confidence            6677777777777     46666666665555 46777777666665 334554433   344444 4567999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          494 LEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~el  517 (536)
                      ++++.+++.+..++..+|.++.+-
T Consensus       231 e~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          231 EAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHhc
Confidence            999999999999888888877653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.92  E-value=0.0014  Score=78.69  Aligned_cols=110  Identities=9%  Similarity=0.066  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHHHHHhCC-------------------------CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q 009385          414 ADYFRTELLYQTGLAQEP-------------------------NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD  468 (536)
Q Consensus       414 gdyeeAee~YqKALeLdP-------------------------dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd  468 (536)
                      |++++|+++|++|...++                         .+++-+..++..| +..|.+++|+.+|+++|.++|.|
T Consensus      1235 ge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yY-e~~G~feEAI~LlE~aL~LeraH 1313 (1630)
T 1xi4_A         1235 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYY-QDRGYFEELITMLEAALGLERAH 1313 (1630)
T ss_pred             CCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHH-HHcCCHHHHHHHHHHHhccChhH
Confidence            678888888888744333                         1333444444444 36899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCCcccc
Q 009385          469 AESFSKYASFLWRVR-NDLWAAEETFLEAISADP-----TNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       469 aeAL~nLG~~L~e~~-GD~eEAee~feKALeLDP-----dNpeal~NyA~~L~elGr~E~cl  524 (536)
                      ...+..||.++.+.+ +++.++.++|...+.+.|     .++..+..+..+|.+.|+++.+.
T Consensus      1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            999988888776543 467888889998888877     77777888888888888776554

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.80  E-value=0.00068  Score=72.33  Aligned_cols=106  Identities=8%  Similarity=0.095  Sum_probs=87.4

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CCHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR-NDLWAAE  490 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~-GD~eEAe  490 (536)
                      +.++++.|..+..+ |..+|++..   .+..+|. ..|.+++|..+|+++|.+++.|..++..||.++.+.+ +++.+++
T Consensus       189 ~~~ef~lA~~~~l~-L~~~ad~l~---~lv~~Ye-k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl  263 (449)
T 1b89_A          189 DGKEFRLAQMCGLH-IVVHADELE---ELINYYQ-DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL  263 (449)
T ss_dssp             HTTCHHHHHHTTTT-TTTCHHHHH---HHHHHHH-HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCcHHHHHHHHHH-HHhCHhhHH---HHHHHHH-HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            34899999988886 446666544   4554444 7999999999999999999999999999998877543 4678889


Q ss_pred             HHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCCcc
Q 009385          491 ETFLEAISADP-----TNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       491 e~feKALeLDP-----dNpeal~NyA~~L~elGr~E~  522 (536)
                      +.|...+.+.|     .++..+..+..+|.+.++.|.
T Consensus       264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            99999999988     888889999999999998764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.55  E-value=0.0064  Score=56.95  Aligned_cols=88  Identities=15%  Similarity=0.126  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHH
Q 009385          417 FRTELLYQTGLAQEPN--------DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWA  488 (536)
Q Consensus       417 eeAee~YqKALeLdPd--------n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eE  488 (536)
                      ++-.+.|++|+..-|-        ...+|..||.+ . ..+|.++|...|+.++.++...+.+|..+|.|-..+ |++.+
T Consensus        36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq-gnl~k  112 (161)
T 4h7y_A           36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-K-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ-GNVKK  112 (161)
T ss_dssp             HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-H-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT-TCHHH
T ss_pred             HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-H-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-ccHHH
Confidence            7888999999999875        35678888865 3 469999999999999999999999999999988764 69999


Q ss_pred             HHHHHHHHHHhCCCCHHHH
Q 009385          489 AEETFLEAISADPTNSYYA  507 (536)
Q Consensus       489 Aee~feKALeLDPdNpeal  507 (536)
                      |.+.+.+|+.+.|...+.+
T Consensus       113 ARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A          113 SKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHHhccCCCcHHHH
Confidence            9999999999999987753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.43  E-value=0.0098  Score=54.81  Aligned_cols=93  Identities=10%  Similarity=-0.064  Sum_probs=72.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV--AHDYDRAEEYFKRAIAVEPP-DAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~--~GD~deAEe~FeKALeLDPd-daeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .+.....+-|.+-+. +.-.+.+.++||..|...  ..+..+++..++..++.+|. .-+-++.+|..+++. |+|++|.
T Consensus        20 eeL~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl-~~Y~~Ar   97 (144)
T 1y8m_A           20 QQLEILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAK   97 (144)
T ss_dssp             HHHHHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHh-hhHHHHH
Confidence            355556666655422 355789999999877631  23567899999999999995 567889999888875 6999999


Q ss_pred             HHHHHHHHhCCCCHHHHH
Q 009385          491 ETFLEAISADPTNSYYAA  508 (536)
Q Consensus       491 e~feKALeLDPdNpeal~  508 (536)
                      .+.+..|+++|+|.++..
T Consensus        98 ~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           98 RYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             HHHHHHHHTCCCCHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHH
Confidence            999999999999998754

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.22  E-value=0.018  Score=53.89  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=53.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFS  473 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~  473 (536)
                      +|.++|.+.|+.++.+....+.+|..+|++-. .+|+.++|.+.+.+|+.+.|...+.+.
T Consensus        74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEi-Rqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKFAFVHISFAQFEL-SQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            58889999999999998889999999999877 699999999999999999999887654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.14  E-value=0.021  Score=52.07  Aligned_cols=94  Identities=10%  Similarity=-0.072  Sum_probs=72.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV--AHDYDRAEEYFKRAIAVEPP-DAESFSKYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~--~GD~deAEe~FeKALeLDPd-daeAL~nLG~~L~e~~GD~eEAe  490 (536)
                      .+....++-|++=+.-.| .+.+.++||..|...  ..+..+++..++..++.+|. .-+-++.+|..+++. |+|++|.
T Consensus        21 eeL~~l~~qy~~E~~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~ykl-gdY~~Ar   98 (134)
T 3o48_A           21 QQLEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAK   98 (134)
T ss_dssp             HHHHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh-hhHHHHH
Confidence            455666666666442223 578999999877632  22566899999999999995 478899999888886 5999999


Q ss_pred             HHHHHHHHhCCCCHHHHHH
Q 009385          491 ETFLEAISADPTNSYYAAN  509 (536)
Q Consensus       491 e~feKALeLDPdNpeal~N  509 (536)
                      .+.+..++++|+|.++..-
T Consensus        99 ~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           99 RYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             HHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHhhCCCCHHHHHH
Confidence            9999999999999987543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.06  E-value=0.0074  Score=54.31  Aligned_cols=65  Identities=15%  Similarity=0.147  Sum_probs=56.8

Q ss_pred             ccCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQE-P-NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLd-P-dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      ...+..+++.+++..+..+ | ...+.++.+|..++ ..|+|++|..+++..|+++|+|..|......
T Consensus        50 ~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           50 YNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             SHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3467778999999999987 6 67899999999888 6999999999999999999999999776543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.01  E-value=0.02  Score=53.94  Aligned_cols=99  Identities=18%  Similarity=0.094  Sum_probs=70.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---C--------------
Q 009385          413 YADYFRTELLYQTGLAQEPNDPL---------LLANYAQFLYIVAHDYDRAEEYFKRAIAVE---P--------------  466 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~e---------AL~NLA~lL~e~~GD~deAEe~FeKALeLD---P--------------  466 (536)
                      .+.|+-|+..+..++.+..++++         ++..+|.+++ ..++|.+|+.+|++||++.   |              
T Consensus        33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf-~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss  111 (167)
T 3ffl_A           33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLF-HDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAS  111 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHCC---------------
T ss_pred             hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCC
Confidence            37899999999887777544444         7888999999 6999999999999997642   1              


Q ss_pred             --------CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385          467 --------PDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       467 --------ddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L  514 (536)
                              .+.+..+.++.++.+. +++++|+..++.. -..-..+.+...+|.+|
T Consensus       112 ~p~s~~~~~e~Elkykia~C~~~l-~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          112 TPQSQCLPSEIEVKYKLAECYTVL-KQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHT-TCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             CcccccccchHHHHHHHHHHHHHH-CCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                    1236778888888776 4889988876543 11234455555555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.81  E-value=0.29  Score=51.84  Aligned_cols=148  Identities=17%  Similarity=0.148  Sum_probs=101.9

Q ss_pred             ChHHHHHHHHHHHHHHhccccccccccHHHHHHhcCcc-ccc-c-CccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q 009385          367 DREEELNLWNSIVDEASQMQVTDESLDHETMERFVSPV-TAN-I-EADDYADYFRTELLYQTGLAQE--PNDPLLLANYA  441 (536)
Q Consensus       367 ~~e~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV-~Ae-L-epDd~gdyeeAee~YqKALeLd--Pdn~eAL~NLA  441 (536)
                      +.++-+.+|..|.++       +...|..++.-++... .+. . +....++.++|.+.|++..+..  | |...|+.+-
T Consensus        41 ~~~~A~~lf~~M~~~-------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI  112 (501)
T 4g26_A           41 DVLEALRLYDEARRN-------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGA  112 (501)
T ss_dssp             CHHHHHHHHHHHHHH-------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHH
Confidence            455667778777654       3456666666665432 111 0 1112356889999999887763  4 667777777


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Q 009385          442 QFLYIVAHDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRVRNDLWAAEETFLEAISA--DPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       442 ~lL~e~~GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~~GD~eEAee~feKALeL--DPdNpeal~NyA~~L~elG  518 (536)
                      ..+. ..|++++|++.|++..+.. ..|...|+.+=..+.. .|++++|.++|++..+.  .|+ ...+..+-..+.+.|
T Consensus       113 ~~~~-~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g  189 (501)
T 4g26_A          113 RLAV-AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTK  189 (501)
T ss_dssp             HHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTT
T ss_pred             HHHH-hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCC
Confidence            6777 5899999999999988753 3366677766666665 47999999999998875  454 445677888888999


Q ss_pred             CCccccC
Q 009385          519 GEDTCFP  525 (536)
Q Consensus       519 r~E~clp  525 (536)
                      +.++++-
T Consensus       190 ~~d~A~~  196 (501)
T 4g26_A          190 NADKVYK  196 (501)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            8776543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.68  E-value=0.025  Score=51.50  Aligned_cols=65  Identities=12%  Similarity=0.004  Sum_probs=57.3

Q ss_pred             ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPN-DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPd-n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      +..+..+++.+++..++.+|. ..+.++.+|..++ ..|+|++|.++.+++|+++|+|..|......
T Consensus        55 ~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           55 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            446888999999999999994 5789999998888 6999999999999999999999999776554

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.65  E-value=0.1  Score=52.55  Aligned_cols=63  Identities=19%  Similarity=0.309  Sum_probs=57.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYA  476 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG  476 (536)
                      .++.++|+...+..|+.+|.|......|.++|+ ..|++++|.+.++-+.+++|+.......|-
T Consensus        10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr   72 (273)
T 1zbp_A           10 EGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLR   72 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            389999999999999999999999999999999 699999999999999999999987655543

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.57  E-value=0.045  Score=58.90  Aligned_cols=65  Identities=18%  Similarity=0.142  Sum_probs=41.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL  479 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L  479 (536)
                      ..+..|..+|.+|+.++|++...++.+|.+.. ..|+.-+|.-+|-|+|.....++.+..|+..++
T Consensus       166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            34556666666666666666666666665444 456666666666666666666666666666544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.05  E-value=0.068  Score=49.23  Aligned_cols=65  Identities=12%  Similarity=0.000  Sum_probs=56.8

Q ss_pred             ccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEP-NDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdP-dn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      ...+..+++.+++..+..+| +..+.++.+|..++ ..|+|++|.++.+..|+++|+|..|......
T Consensus        54 ~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           54 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            34688899999999999999 46788999998888 6999999999999999999999998765543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.06  E-value=0.095  Score=49.33  Aligned_cols=81  Identities=9%  Similarity=-0.013  Sum_probs=63.4

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCC------
Q 009385          442 QFLYIVAHDYDRAEEYFKRAIAVEPPDAE---------SFSKYASFLWRVRNDLWAAEETFLEAISAD---PTN------  503 (536)
Q Consensus       442 ~lL~e~~GD~deAEe~FeKALeLDPddae---------AL~nLG~~L~e~~GD~eEAee~feKALeLD---PdN------  503 (536)
                      ..++ ..+.|+.|+.....++.+..++++         ++..+|..++.. ++|.+|+.+|++||++.   |.+      
T Consensus        28 k~L~-d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~-~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           28 RDMA-AAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD-KEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHH-HTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHH-HhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3455 479999999999998887655554         889999999985 59999999999997642   222      


Q ss_pred             ----------------HHHHHHHHHHHHHcCCCcccc
Q 009385          504 ----------------SYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       504 ----------------peal~NyA~~L~elGr~E~cl  524 (536)
                                      .+..+..|.++.++|+.+.++
T Consensus       106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A          106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence                            267899999999999876554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.01  E-value=0.14  Score=57.84  Aligned_cols=106  Identities=12%  Similarity=-0.018  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HH-hCCHHHHHHHHHHHHH--------hCCCCH----------HHHHHH
Q 009385          416 YFRTELLYQTGLAQEPNDPLLLANYAQFLY-IV-AHDYDRAEEYFKRAIA--------VEPPDA----------ESFSKY  475 (536)
Q Consensus       416 yeeAee~YqKALeLdPdn~eAL~NLA~lL~-e~-~GD~deAEe~FeKALe--------LDPdda----------eAL~nL  475 (536)
                      ++.|+.++++..+.+|.+...+.. +.+.. .. ..+--+|.....++++        +.+.+.          ..+..=
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~-~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q  343 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKT-AMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ  343 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence            678999999999999977544432 22211 11 1234467777777764        234443          234444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          476 ASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       476 G~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +.||.. +|+++-|+++.++|+.+.|.....++.|+.+|..+|++|.+
T Consensus       344 a~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~A  390 (754)
T 4gns_B          344 TNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKA  390 (754)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHH
Confidence            666665 67999999999999999999999999999999999998754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.90  E-value=0.3  Score=51.85  Aligned_cols=107  Identities=11%  Similarity=0.101  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHH-------
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA--------IAVEPPDAESFSKYASF-------  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKA--------LeLDPddaeAL~nLG~~-------  478 (536)
                      +++++|.+.+     ...+++..|.++|..+. ..++++.|+++|.++        |....++.+.+..++..       
T Consensus       666 ~~~~~A~~~~-----~~~~~~~~W~~la~~al-~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~  739 (814)
T 3mkq_A          666 GQLTLARDLL-----TDESAEMKWRALGDASL-QRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKF  739 (814)
T ss_dssp             TCHHHHHHHH-----TTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHH-----HhhCcHhHHHHHHHHHH-HcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCch
Confidence            5666665553     34578999999998877 699999999999986        22234555544444322       


Q ss_pred             -----HHHhcCCHHHHHHHHHH------HHH----hCCCC---HHHHHHHHHHHHHcCCCccccCC
Q 009385          479 -----LWRVRNDLWAAEETFLE------AIS----ADPTN---SYYAANYANFLWNTGGEDTCFPL  526 (536)
Q Consensus       479 -----L~e~~GD~eEAee~feK------ALe----LDPdN---peal~NyA~~L~elGr~E~clpl  526 (536)
                           ++...|++++|+++|.+      |+.    ..|..   +.+...|+.-|...|+.+.+--+
T Consensus       740 ~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l  805 (814)
T 3mkq_A          740 NLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVSERV  805 (814)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHHTTB
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHHHhh
Confidence                 22224678888877755      333    34544   35677888888888865433333

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.49  E-value=0.17  Score=54.53  Aligned_cols=80  Identities=14%  Similarity=0.208  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      .+..+|.+.. ....++.|..+|++|+.+.|++...++.||.+... .|+.-+|.-+|-|++....-.+.+..|+..++-
T Consensus       154 ~l~~LGDL~R-Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHH-HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            6778898766 68899999999999999999999999999986655 578999999999999988888999999998876


Q ss_pred             Hc
Q 009385          516 NT  517 (536)
Q Consensus       516 el  517 (536)
                      ..
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.75  E-value=2.9  Score=44.21  Aligned_cols=120  Identities=10%  Similarity=-0.003  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHhccccccccccHHHHHHhcCccccccCccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Q 009385          370 EELNLWNSIVDEASQMQVTDESLDHETMERFVSPVTANIEADDYADYFRTELLYQTGLAQ--EPNDPLLLANYAQFLYIV  447 (536)
Q Consensus       370 ~EvaLwnsmvaEA~~mQ~~d~~lD~ea~krlvspV~AeLepDd~gdyeeAee~YqKALeL--dPdn~eAL~NLA~lL~e~  447 (536)
                      .-..+|+.|.++       +...|..++.-++....      ..|++++|.++|++..+.  .| |...|+.+-..+. .
T Consensus        88 ~A~~lf~~M~~~-------G~~Pd~~tyn~lI~~~~------~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~-~  152 (501)
T 4g26_A           88 RGFDIFKQMIVD-------KVVPNEATFTNGARLAV------AKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFC-R  152 (501)
T ss_dssp             HHHHHHHHHHHT-------TCCCCHHHHHHHHHHHH------HHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHh-------CCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHH-H
Confidence            445577776653       33456666665554331      228999999999998876  45 5666666655666 6


Q ss_pred             hCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHH
Q 009385          448 AHDYDRAEEYFKRAIAVE-PPDAESFSKYASFLWRVRNDLWAAEETFLEAISA--DPTNSY  505 (536)
Q Consensus       448 ~GD~deAEe~FeKALeLD-PddaeAL~nLG~~L~e~~GD~eEAee~feKALeL--DPdNpe  505 (536)
                      .|+.++|.+.|++..+.. ..|...|+.+-..+... |+.++|.++|++..+.  .|+...
T Consensus       153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~-g~~d~A~~ll~~Mr~~g~~ps~~T  212 (501)
T 4g26_A          153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT-KNADKVYKTLQRLRDLVRQVSKST  212 (501)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHhCCCcCHHH
Confidence            899999999999998864 33566777777777764 7999999999998774  565443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.21  E-value=2.6  Score=43.09  Aligned_cols=61  Identities=5%  Similarity=-0.058  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAIS  498 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALe  498 (536)
                      ++..++..+. ..|++++|+..+++++..+|-+-.++..+-.+|+. .|+..+|++.|++..+
T Consensus       173 a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~-~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          173 AHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            3444555555 58999999999999999999999999888887776 4799999999988755

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.50  E-value=1.1  Score=45.07  Aligned_cols=66  Identities=23%  Similarity=0.251  Sum_probs=58.3

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANF  513 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~  513 (536)
                      ..|++++|++.....|+.+|.|++....|-.+|+. .|++++|.+-++-+.+++|+.......|-.+
T Consensus         9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            47999999999999999999999999999998886 4799999999999999999987765555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=85.87  E-value=2  Score=48.67  Aligned_cols=59  Identities=19%  Similarity=0.098  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEA  496 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKA  496 (536)
                      ++.--+.+|. .+|+++-|+++.++|+.+.|.+-..|+.|+.+|... ||++.|+-.+.-+
T Consensus       339 LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l-~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIKK-EEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHS
T ss_pred             HHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh-ccHHHHHHHHhcC
Confidence            4444566776 589999999999999999999999999999999875 6999999665543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.52  E-value=13  Score=34.93  Aligned_cols=42  Identities=12%  Similarity=-0.024  Sum_probs=33.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRA  461 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKA  461 (536)
                      |+++.|.+..+..     ++..-|..+|.... ..|+++-|+++|.++
T Consensus        19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           19 GNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ   60 (177)
T ss_dssp             TCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence            7888888776554     67888999998766 589999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	536
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-06
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	2e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	5e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
                E  Y T L   P     L N A  +     + + A   +++A+ V P  A + S 
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLAN-IKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
            AS L + +  L  A   + EAI   PT +   +N  N L    
Sbjct: 345 LASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
           D+   E        QEP++  +L   +  ++      DR+  +   AI   P  AE++S 
Sbjct: 14  DFEAAERHCMQLWRQEPDNTGVLLLLSS-IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72

Query: 475 YASFLWRVRNDLW 487
             +          
Sbjct: 73  LGNVYKERGQLQE 85

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 4e-06
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 5/92 (5%)

Query: 434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF 493
           P+ LA+        A D++ AE +  +    EP +       +S  ++    L  +    
Sbjct: 2   PMELAH----REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFS 56

Query: 494 LEAISADPTNSYYAANYANFLWNTGGEDTCFP 525
             AI  +P  +   +N  N     G       
Sbjct: 57  TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 2/104 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
            + R    Y   L+  PN  ++  N A  +Y      D A + ++RAI ++P   +++  
Sbjct: 218 IFDRAVAAYLRALSLSPNHAVVHGNLAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276

Query: 475 YASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
            A+ L   +  +  AE+ +  A+   PT++    N AN     G
Sbjct: 277 LANALKE-KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSK 474
           +      LY+  L   P      +N A  +         A  ++K AI + P  A+++S 
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTFADAYSN 378

Query: 475 YASFLWRVRN 484
             + L  +++
Sbjct: 379 MGNTLKEMQD 388

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 450 DYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAAN 509
              +A E    AI   P DA   S +   L     D   A+E  +++I   P     A+ 
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 510 YANFLWNTGGEDTCF 524
             + +          
Sbjct: 70  LRHLVKAAQARKDFA 84

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 46.6 bits (110), Expect = 3e-06
 Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 422 LYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWR 481
           L    +   P D  L +++ + L  +  D++RA+E   ++I + P      S+    +  
Sbjct: 18  LLIEAIKASPKDASLRSSFIE-LLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 76

Query: 482 VRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG 518
            +     A+      +  +      +    N    + 
Sbjct: 77  AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ 113

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 16/130 (12%)

Query: 409 EADDYADYFRTELLYQTGLAQEPNDPLLLANYAQFL-------------YIVAHDYDRAE 455
             D      R    Y+  L    + P +    AQ+L                    D A 
Sbjct: 25  TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84

Query: 456 EYFKRAIAVEPPDAESF-SKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAA-NYANF 513
             ++RAI+            YA +              +   ++ +  +       Y  F
Sbjct: 85  NIYERAISTLLKKNMLLYFAYADYEESRMKYEK-VHSIYNRLLAIEDIDPTLVYIQYMKF 143

Query: 514 LWNTGGEDTC 523
                G  + 
Sbjct: 144 ARRAEGIKSG 153

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 3/92 (3%)

Query: 415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVA--HDYDRAEEYFKRAIAVEPPDAESF 472
           D  + E  +Q+  A           YA  L       D  +     +  +     + +  
Sbjct: 14  DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRD 73

Query: 473 SKYA-SFLWRVRNDLWAAEETFLEAISADPTN 503
             +  +       +   A +     +  +P N
Sbjct: 74  YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 105

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 454 AEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANF 513
           + +Y ++A  ++    +S    A  +W  R  L   ++ + + +  D             
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAE-VWTSRQAL---QDLYQKMLVTDL-EYALDKKVEQD 59

Query: 514 LWNTG 518
           LWN  
Sbjct: 60  LWNHA 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	536
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.6
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.55
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.53
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.52
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.51
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.47
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.46
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.42
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.42
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.41
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.39
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.39
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.37
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.37
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.26
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.26
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.19
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.15
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.08
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.07
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.96
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.95
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.91
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.87
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.79
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.76
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.75
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.69
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.64
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.64
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.61
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.5
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.49
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.28
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.23
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.21
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.12
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.05
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.86
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.71

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-15  Score=127.73  Aligned_cols=99  Identities=18%  Similarity=0.234  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |+|++|+.+|.++|+.+|+++.+|.++|.++. ..|++++|+.+|+++++++|+++.+|+++|.++... |++++|+.+|
T Consensus        17 g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~-~~~~~A~~~~   94 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL-NRFEEAKRTY   94 (117)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHHc-cCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988764 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHH
Q 009385          494 LEAISADPTNSYYAANYANFL  514 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L  514 (536)
                      ++|++++|+++.++.+++.+.
T Consensus        95 ~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          95 EEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.6e-15  Score=128.61  Aligned_cols=100  Identities=15%  Similarity=0.188  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|++|+.+|++||+++|+++.+|+++|.++. ..|++++|+.+|++||+++|+++.++.++|.++... |++++|+.+|
T Consensus        24 ~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~-g~~~eA~~~~  101 (159)
T d1a17a_          24 KDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL-GKFRAALRDY  101 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            89999999999999999999999999999888 699999999999999999999999999999988875 6999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHH
Q 009385          494 LEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~  515 (536)
                      ++|++++|+++.++..++.+..
T Consensus       102 ~~a~~~~p~~~~~~~~l~~~~~  123 (159)
T d1a17a_         102 ETVVKVKPHDKDAKMKYQECNK  123 (159)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHH
Confidence            9999999999999888776643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=2.9e-15  Score=131.40  Aligned_cols=90  Identities=12%  Similarity=0.111  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |+|++|+.+|++||+++|+++.+|.++|.++. ..|++++|+.+|++||+++|+++.+|+++|.++... |++++|+.+|
T Consensus        18 g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~-~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l-~~~~~A~~~~   95 (201)
T d2c2la1          18 RKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM-ESYDEAIANL   95 (201)
T ss_dssp             TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHh-hhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence            89999999999999999999999999999877 699999999999999999999999999999998875 6999999999


Q ss_pred             HHHHHhCCCCHH
Q 009385          494 LEAISADPTNSY  505 (536)
Q Consensus       494 eKALeLDPdNpe  505 (536)
                      ++|++++|++..
T Consensus        96 ~~al~l~p~~~~  107 (201)
T d2c2la1          96 QRAYSLAKEQRL  107 (201)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHhCcccHH
Confidence            999999986553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=5.3e-14  Score=127.23  Aligned_cols=105  Identities=15%  Similarity=0.136  Sum_probs=96.8

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|++++|+..|++||+++|+++.+|+++|.++. ..|++++|+++|+++++++|+++.++.++|.++... |++++|+.+
T Consensus        50 ~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~  127 (259)
T d1xnfa_          50 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG-GRDKLAQDD  127 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH-hhHHHHHHH
Confidence            389999999999999999999999999998887 699999999999999999999999999999988875 699999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          493 FLEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       493 feKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      |+++++++|+++.....++......+.
T Consensus       128 ~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         128 LLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            999999999999887777777666653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=2.6e-14  Score=125.45  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=93.4

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---------VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV  482 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---------~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~  482 (536)
                      ..+.|++|+..|++|++++|+|+.+++++|.++..         ..+.+++|+.+|++||+++|+++.+++++|.++..+
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            34679999999999999999999999999998762         235678999999999999999999999999988754


Q ss_pred             c----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          483 R----------NDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       483 ~----------GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      +          +++++|+++|++|++++|+|..++.+++...-..+
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~  134 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  134 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHH
Confidence            2          25799999999999999999999999998764443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.3e-14  Score=130.96  Aligned_cols=104  Identities=26%  Similarity=0.233  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++.+|+..|++++...|.+...+..+|.++. ..|++++|+++|+++++++|+++.++.++|.++.. .|++++|+.+|
T Consensus       285 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~  362 (388)
T d1w3ba_         285 GSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHY  362 (388)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT-TTCCHHHHHHH
T ss_pred             CCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            67777777777777777777777777777766 57788888888888888888888888888877765 45788888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGG  519 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr  519 (536)
                      ++|++++|+++.++.++|.+|.++|+
T Consensus       363 ~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         363 KEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            88888888888888888888877775

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=125.08  Aligned_cols=103  Identities=13%  Similarity=0.036  Sum_probs=90.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--VAHDYDRAEEYFKRAIAVEPPD--AESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--~~GD~deAEe~FeKALeLDPdd--aeAL~nLG~~L~e~~GD~eEA  489 (536)
                      +++++|++.|++||.++|+++.+++|||.+|..  ..+|+++|+++|+++++.+|++  +++++++|.+++.. |++++|
T Consensus        13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~-g~~~~A   91 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL-KEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH-hhhHHH
Confidence            689999999999999999999999999998762  1346778999999999999876  56899999988875 799999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~el  517 (536)
                      +++|++|++++|+|..++...+.+.-..
T Consensus        92 ~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          92 LKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999988887766543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=134.14  Aligned_cols=104  Identities=9%  Similarity=0.023  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFL  494 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~fe  494 (536)
                      ++++|+.+|+++|+++|++..+|.++|.++. ..|++++|+++|+++++++|+|..+|.++|.++... +++++|+.+|+
T Consensus        93 ~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~-~~~~~Al~~~~  170 (315)
T d2h6fa1          93 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF-KLWDNELQYVD  170 (315)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence            5788888888888888888888888887766 578888888888888888888888888888777664 57888888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          495 EAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       495 KALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      +||+++|.|..+++++|.++...|+.
T Consensus       171 ~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         171 QLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHCCccHHHHHHHHHHHHHcccc
Confidence            88888888888888888887777764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-13  Score=125.09  Aligned_cols=107  Identities=19%  Similarity=0.197  Sum_probs=101.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|++|++++|+++.++.++|.++. ..|++++|+++|++++...|+++.++..+|.++.. .|++++|+++|
T Consensus       251 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~  328 (388)
T d1w3ba_         251 GLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLY  328 (388)
T ss_dssp             TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-CCCHHHHHHHH
Confidence            89999999999999999999999999999888 68999999999999999999999999999998876 47999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      ++|++++|+++.++.++|.++...|+.++
T Consensus       329 ~~al~~~p~~~~~~~~la~~~~~~g~~~~  357 (388)
T d1w3ba_         329 RKALEVFPEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999998754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.4e-13  Score=124.34  Aligned_cols=107  Identities=21%  Similarity=0.202  Sum_probs=95.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++++|+.+|++++..+|+++.+|.++|.++. ..|++++|+++|+++++++|+++.++.++|.++... |++++|+.+|
T Consensus       186 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~  263 (323)
T d1fcha_         186 GEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL-GAHREAVEHF  263 (323)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHH
T ss_pred             HHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHC-CCHHHHHHHH
Confidence            89999999999999999999999999999887 699999999999999999999999999999998875 6999999999


Q ss_pred             HHHHHhCCCCHHH-----------HHHHHHHHHHcCCCcc
Q 009385          494 LEAISADPTNSYY-----------AANYANFLWNTGGEDT  522 (536)
Q Consensus       494 eKALeLDPdNpea-----------l~NyA~~L~elGr~E~  522 (536)
                      ++|++++|++..+           +.+++.++..+|+.|.
T Consensus       264 ~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~  303 (323)
T d1fcha_         264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  303 (323)
T ss_dssp             HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999998864           3567778888887653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-12  Score=116.93  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP---------------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~---------------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~  478 (536)
                      ++|++|+.+|++||...|.+.               .++.|+|.+++ ..|++++|+.++++||+++|+++.+++++|.+
T Consensus        27 ~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  105 (170)
T d1p5qa1          27 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSNNEKGLSRRGEA  105 (170)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhccccchhhhHHHHHH
Confidence            899999999999999988653               56788998877 69999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      +... |++++|+.+|++|++++|+|+.+...++.+....+
T Consensus       106 ~~~~-g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1         106 HLAV-NDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHh-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            8875 69999999999999999999999999988865544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=2.9e-13  Score=122.26  Aligned_cols=107  Identities=21%  Similarity=0.188  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQ----EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeL----dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEA  489 (536)
                      ...+.|+..+.+++..    +|..+.+++++|.++. ..|++++|+.+|++||+++|+++.+++++|.++... |++++|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~-g~~~~A   90 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQA-GNFDAA   90 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHH-HHHHHh
Confidence            4677888888898875    3455679999998887 699999999999999999999999999999988764 699999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          490 EETFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       490 ee~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +.+|++|++++|+++.++.++|.++..+|+.+.
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~  123 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL  123 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999999998754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-12  Score=122.26  Aligned_cols=108  Identities=19%  Similarity=0.281  Sum_probs=99.2

Q ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPN--DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPd--n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      +.+.+|+..|+++++++|+  ++.++.++|.++. ..|++++|+.+|++++..+|+++.++.++|.++... |++++|+.
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~  227 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG-NQSEEAVA  227 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcccccccchhhHHHHH-HHHHHhhhhcccccccccccccccchhhhhhccccc-ccchhHHH
Confidence            4678899999999999998  4678889998877 699999999999999999999999999999988874 69999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +|++|++++|+++.++.++|.++..+|+.+++
T Consensus       228 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         228 AYRRALELQPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999987544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.41  E-value=2e-12  Score=113.32  Aligned_cols=103  Identities=16%  Similarity=0.119  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP----------------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~----------------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      ++|.+|+..|++||..-|...                .++.|+|.+++ .+|++++|+++|++||+++|+++.+|+++|.
T Consensus        31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~  109 (153)
T d2fbna1          31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNNVKALYKLGV  109 (153)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-HhcccchhhhhhhccccccchhhhhhHHhHH
Confidence            799999999999998766433                46789998887 6999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          478 FLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      ++... |++++|+.+|++|++++|+|+.+...+..+...+.
T Consensus       110 ~~~~l-g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         110 ANMYF-GFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             HHHHH-TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99876 69999999999999999999999999988876543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-12  Score=119.06  Aligned_cols=105  Identities=13%  Similarity=0.070  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      ++|++|++.|.+   +.|.++.+|+|+|.+++ ..|++++|+++|++||+++|+++.+++++|.++.+. |++++|++.|
T Consensus        19 ~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~-g~~~~A~~~~   93 (192)
T d1hh8a_          19 KDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT-EKYDLAIKDL   93 (192)
T ss_dssp             TCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             CCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh-ccHHHHHHHH
Confidence            899999999986   46778999999999888 699999999999999999999999999999998875 6999999999


Q ss_pred             HHHHHhCCCC----------------HHHHHHHHHHHHHcCCCccc
Q 009385          494 LEAISADPTN----------------SYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       494 eKALeLDPdN----------------peal~NyA~~L~elGr~E~c  523 (536)
                      ++|+...|.|                .++++++|.++..+|+.+++
T Consensus        94 ~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A  139 (192)
T d1hh8a_          94 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKA  139 (192)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHH
Confidence            9999987765                36788999999999987544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.39  E-value=8.8e-13  Score=116.22  Aligned_cols=103  Identities=13%  Similarity=0.098  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQ----------------EPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       414 gdyeeAee~YqKALeL----------------dPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      ++|.+|+..|++||+.                +|.+..++.|+|.++. ..|++++|+.+|.+||+++|+++.+|+++|.
T Consensus        41 ~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~  119 (169)
T d1ihga1          41 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDPSNTKALYRRAQ  119 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhhhhhhHHHhHHH
Confidence            7999999999999864                5778888999998877 6999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          478 FLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       478 ~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      ++... |++++|+..|++|++++|+|+.+...++.+.....
T Consensus       120 ~~~~l-~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1         120 GWQGL-KEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             HHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99875 69999999999999999999999999988876543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=7.5e-13  Score=115.72  Aligned_cols=90  Identities=17%  Similarity=0.131  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          433 DPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYAN  512 (536)
Q Consensus       433 n~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~  512 (536)
                      ++..+.+.|..++ ..|+|++|+.+|++||+++|+++.+|.++|.++... |++++|+.+|++|++++|+++.++.++|.
T Consensus         3 ~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~-~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKM-QQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhh-hhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            4667888999998 699999999999999999999999999999998775 69999999999999999999999999999


Q ss_pred             HHHHcCCCcccc
Q 009385          513 FLWNTGGEDTCF  524 (536)
Q Consensus       513 ~L~elGr~E~cl  524 (536)
                      ++..+|+++.++
T Consensus        81 ~~~~l~~~~~A~   92 (201)
T d2c2la1          81 CQLEMESYDEAI   92 (201)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHCCCHHHHH
Confidence            999999986553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.5e-12  Score=126.22  Aligned_cols=110  Identities=11%  Similarity=0.030  Sum_probs=90.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +.+++|+++|++||+++|++..+|+++|.++....+++++|+.+|+++++++|++..+|+++|.++... |++++|+++|
T Consensus        57 e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l-~~~~eAl~~~  135 (315)
T d2h6fa1          57 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWL-RDPSQELEFI  135 (315)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCCTTHHHHH
T ss_pred             CchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhh-ccHHHHHHHH
Confidence            577888888888888888888888888887763234688888888888888888888888888877664 6888888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCcccc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E~cl  524 (536)
                      ++|++++|+|..++.++|+++..+|+.+.++
T Consensus       136 ~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al  166 (315)
T d2h6fa1         136 ADILNQDAKNYHAWQHRQWVIQEFKLWDNEL  166 (315)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             hhhhhhhhcchHHHHHHHHHHHHHHhhHHHH
Confidence            8888888888888888888888888876543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.37  E-value=2.2e-12  Score=107.66  Aligned_cols=82  Identities=13%  Similarity=0.038  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      |++.+|+.+|+++++++|+++.+|.++|.++. ..+++++|+.+|++|++++|+++.++.++|.++... |++++|+++|
T Consensus        30 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~-g~~~~A~~~l  107 (112)
T d1hxia_          30 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE-HNANAALASL  107 (112)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhcccccccchhhhhhhhhhh-hhhhHHHhhcccccccccccccccchHHHHHHHHHC-CCHHHHHHHH
Confidence            89999999999999999999999999998876 689999999999999999999999999999988875 5899999999


Q ss_pred             HHHH
Q 009385          494 LEAI  497 (536)
Q Consensus       494 eKAL  497 (536)
                      ++.|
T Consensus       108 ~~~l  111 (112)
T d1hxia_         108 RAWL  111 (112)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9876

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.32  E-value=7.6e-12  Score=110.72  Aligned_cols=103  Identities=13%  Similarity=0.173  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPND---------------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASF  478 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn---------------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~  478 (536)
                      |+|.+|+.+|.+||..-|..               ..++.|+|.+++ ..|++++|+.+++++|+++|++..+++++|.+
T Consensus        29 ~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~  107 (168)
T d1kt1a1          29 GKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEA  107 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHHHHHHHH
Confidence            89999999999999865442               245778998877 69999999999999999999999999999998


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          479 LWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       479 L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      +... |++++|+.+|++|++++|+|+.+...++.+....+
T Consensus       108 ~~~l-~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  146 (168)
T d1kt1a1         108 QLLM-NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK  146 (168)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            8875 69999999999999999999999988888776554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.5e-11  Score=104.67  Aligned_cols=95  Identities=15%  Similarity=0.268  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhcCCH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAE-------SFSKYASFLWRVRNDL  486 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddae-------AL~nLG~~L~e~~GD~  486 (536)
                      ++|++|+.+|.++|+++|+++.++.|+|.++. ..|++++|+.+|++||+++|++..       ++..+|.++.. .+++
T Consensus        18 ~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~-~~~~   95 (128)
T d1elra_          18 KDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK-EEKY   95 (128)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH-hCCH
Confidence            89999999999999999999999999999988 699999999999999999999865       45556666655 4699


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHH
Q 009385          487 WAAEETFLEAISADPTNSYYAANYA  511 (536)
Q Consensus       487 eEAee~feKALeLDPdNpeal~NyA  511 (536)
                      ++|+.+|++++..+|+ +..+..+.
T Consensus        96 ~~A~~~~~kal~~~~~-~~~~~~l~  119 (128)
T d1elra_          96 KDAIHFYNKSLAEHRT-PDVLKKCQ  119 (128)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHH
Confidence            9999999999999875 55554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-11  Score=106.84  Aligned_cols=85  Identities=20%  Similarity=0.141  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          437 LANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       437 L~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      +...|..++ ..|+|++|+.+|++||+++|+++.+|.++|.++... |++++|+..|++|++++|+++.++.++|.++..
T Consensus        13 l~~~gn~~~-~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          13 LKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT-ECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhc-cccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            444677777 699999999999999999999999999999988875 699999999999999999999999999999999


Q ss_pred             cCCCccc
Q 009385          517 TGGEDTC  523 (536)
Q Consensus       517 lGr~E~c  523 (536)
                      +|+.+.+
T Consensus        91 ~g~~~eA   97 (159)
T d1a17a_          91 LGKFRAA   97 (159)
T ss_dssp             TTCHHHH
T ss_pred             cCCHHHH
Confidence            9997654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.26  E-value=8e-12  Score=104.21  Aligned_cols=87  Identities=14%  Similarity=-0.009  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      .++++|..++ ..|++++|+.+|+++++++|+++.++..+|.++... +++++|+.+|++|++++|+++.++.++|.++.
T Consensus        18 ~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          18 NPMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhh-hhHHHhhcccccccccccccccchHHHHHHHH
Confidence            3567888777 699999999999999999999999999999988764 69999999999999999999999999999999


Q ss_pred             HcCCCcccc
Q 009385          516 NTGGEDTCF  524 (536)
Q Consensus       516 elGr~E~cl  524 (536)
                      ..|+.++++
T Consensus        96 ~~g~~~~A~  104 (112)
T d1hxia_          96 NEHNANAAL  104 (112)
T ss_dssp             HHHHHHHHH
T ss_pred             HCCCHHHHH
Confidence            999876543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.8e-11  Score=102.65  Aligned_cols=85  Identities=15%  Similarity=0.066  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          436 LLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLW  515 (536)
Q Consensus       436 AL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~  515 (536)
                      -+.+.|..++ ..|++++|+.+|+++|+++|+++.++.++|.++... |++++|+.+|++|++++|+++.+++++|.++.
T Consensus         5 ~l~~~g~~~~-~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           5 ELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchhhhhccccccccc-ccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            3556788888 699999999999999999999999999999998875 69999999999999999999999999999999


Q ss_pred             HcCCCcc
Q 009385          516 NTGGEDT  522 (536)
Q Consensus       516 elGr~E~  522 (536)
                      .+|+.++
T Consensus        83 ~~~~~~~   89 (117)
T d1elwa_          83 FLNRFEE   89 (117)
T ss_dssp             HTTCHHH
T ss_pred             HccCHHH
Confidence            9998753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5e-11  Score=97.10  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-------AESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYY  506 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-------aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpea  506 (536)
                      ++-.+++|.+++ ..|+|++|+.+|++|+++.|.+       ++++.++|.+++.. |++++|+++|++||+++|+++.+
T Consensus         5 addc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~-g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc-CChHHHHHHHHHHHHhCcCCHHH
Confidence            456789999998 6999999999999999997665       68999999998875 69999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 009385          507 AANYANFLWNT  517 (536)
Q Consensus       507 l~NyA~~L~el  517 (536)
                      +.|++.+...+
T Consensus        83 ~~Nl~~~~~~l   93 (95)
T d1tjca_          83 NGNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999877654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.9e-10  Score=103.03  Aligned_cols=104  Identities=14%  Similarity=0.093  Sum_probs=87.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD----------------AESFSKYA  476 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd----------------aeAL~nLG  476 (536)
                      .|++++|+.+|++||+++|+++.+|+++|.+++ .+|++++|++.|++|+...|.+                .++++++|
T Consensus        49 ~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a  127 (192)
T d1hh8a_          49 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA  127 (192)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHH
Confidence            389999999999999999999999999999887 6999999999999999987765                47889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 009385          477 SFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTG  518 (536)
Q Consensus       477 ~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elG  518 (536)
                      .++.. .|++++|++.|++|+++.|+........+.-....+
T Consensus       128 ~~~~~-~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~~  168 (192)
T d1hh8a_         128 FMYAK-KEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQ  168 (192)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHTT
T ss_pred             HHHHH-CCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhh
Confidence            88776 479999999999999999886544444444333444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=3.8e-10  Score=107.18  Aligned_cols=110  Identities=10%  Similarity=-0.061  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhcCCHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAH--DYDRAEEYFKRAIAVEPPDAESFS-KYASFLWRVRNDLWAAE  490 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~G--D~deAEe~FeKALeLDPddaeAL~-nLG~~L~e~~GD~eEAe  490 (536)
                      +.+.+|+.+|+++++.+|+++.+|+++|.++. ..+  ++++|+.+++++++++|++..++. ..|.++ ...+++++|+
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~Al  164 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEEL  164 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH-HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHH-HhccccHHHH
Confidence            45889999999999999999999999998766 344  589999999999999999999875 455544 4567999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccC
Q 009385          491 ETFLEAISADPTNSYYAANYANFLWNTGGEDTCFP  525 (536)
Q Consensus       491 e~feKALeLDPdNpeal~NyA~~L~elGr~E~clp  525 (536)
                      .+++++++++|++..+++++|.++..+|+.+++..
T Consensus       165 ~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999999999876543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.1e-10  Score=99.08  Aligned_cols=83  Identities=18%  Similarity=0.199  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANF  513 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~  513 (536)
                      +..+-++|..++ ..|+|++|+.+|.++|+++|+++.++.++|.++... |++++|+.+|++|++++|+++..+.++|.+
T Consensus         4 a~~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           4 ALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHc-CchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            345668999888 689999999999999999999999999999999875 699999999999999999987655555555


Q ss_pred             HHHcC
Q 009385          514 LWNTG  518 (536)
Q Consensus       514 L~elG  518 (536)
                      +..+|
T Consensus        82 ~~~lg   86 (128)
T d1elra_          82 YARIG   86 (128)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.96  E-value=6.7e-10  Score=96.59  Aligned_cols=88  Identities=14%  Similarity=0.018  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-----------CHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP------------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPP-----------DAE  470 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~------------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPd-----------dae  470 (536)
                      |+|++|+..|++||+++|+.+            .+|.|+|.++. ..|++++|..+++++|++.|.           ...
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  101 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQDEGKLWIS  101 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhcccccccccccccchhHH
Confidence            899999999999999998753            67899999887 699999999999999987543           245


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 009385          471 SFSKYASFLWRVRNDLWAAEETFLEAISADPTN  503 (536)
Q Consensus       471 AL~nLG~~L~e~~GD~eEAee~feKALeLDPdN  503 (536)
                      +++++|.++... |++++|+++|++|+++.|..
T Consensus       102 a~~~~g~~~~~l-g~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1         102 AVYSRALALDGL-GRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhhHHHHHHH-HHHHHHHHHHHHHHHhhHHh
Confidence            789999988775 69999999999999997754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.95  E-value=5.5e-10  Score=97.40  Aligned_cols=73  Identities=15%  Similarity=0.167  Sum_probs=66.0

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---------RNDLWAAEETFLEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---------~GD~eEAee~feKALeLDPdNpeal~NyA~~L~el  517 (536)
                      ..+.+++|+..|++|++++|+|+++++++|.++...         .+++++|+.+|++|++++|+++.+++++|.+|..+
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            467799999999999999999999999999988742         23578999999999999999999999999999988


Q ss_pred             CC
Q 009385          518 GG  519 (536)
Q Consensus       518 Gr  519 (536)
                      |+
T Consensus        89 g~   90 (145)
T d1zu2a1          89 AF   90 (145)
T ss_dssp             HH
T ss_pred             cc
Confidence            75

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.7e-10  Score=96.82  Aligned_cols=84  Identities=15%  Similarity=0.082  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 009385          439 NYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV--RNDLWAAEETFLEAISADPTN--SYYAANYANFL  514 (536)
Q Consensus       439 NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~--~GD~eEAee~feKALeLDPdN--peal~NyA~~L  514 (536)
                      +++..+. ..+++++|++.|+++|.++|++++++++||.+|...  .+++++|+.+|+++++.+|++  +.+++++|.++
T Consensus         4 ~l~n~~~-~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELV-SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4555555 578999999999999999999999999999988642  246788999999999999876  45899999999


Q ss_pred             HHcCCCccc
Q 009385          515 WNTGGEDTC  523 (536)
Q Consensus       515 ~elGr~E~c  523 (536)
                      .++|+++++
T Consensus        83 ~~~g~~~~A   91 (122)
T d1nzna_          83 YRLKEYEKA   91 (122)
T ss_dssp             HHTTCHHHH
T ss_pred             HHHhhhHHH
Confidence            999997543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.4e-09  Score=109.69  Aligned_cols=107  Identities=10%  Similarity=0.074  Sum_probs=86.4

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee  491 (536)
                      ..+++.+|+..|++++..+|.  .++.++|.++. ..+++++|+.+|++|++++|+++.+|++||.++.. .|++.+|+.
T Consensus       132 ~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~-~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-~~~~~~A~~  207 (497)
T d1ya0a1         132 KQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIAR-YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIF  207 (497)
T ss_dssp             -----------CCHHHHHHHH--HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             hCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-cCCHHHHHH
Confidence            347899999999999998874  67888999877 69999999999999999999999999999998776 579999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCcc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~  522 (536)
                      +|.||+.++|..+.++.|++.++-...+...
T Consensus       208 ~y~ral~~~~~~~~a~~nL~~~~~~~~~~~~  238 (497)
T d1ya0a1         208 YYCRSIAVKFPFPAASTNLQKALSKALESRD  238 (497)
T ss_dssp             HHHHHHSSSBCCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999999999998877655433

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.7e-09  Score=85.82  Aligned_cols=66  Identities=24%  Similarity=0.326  Sum_probs=60.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPND-------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFL  479 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn-------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L  479 (536)
                      .|+|.+|+.+|++|+++.|.+       ..++.++|.+++ ..|++++|+.+|++||+++|+|+.+++|++.+.
T Consensus        18 ~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~   90 (95)
T d1tjca_          18 EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNLKYFE   90 (95)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            389999999999999997654       688999999888 699999999999999999999999999998644

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-08  Score=89.27  Aligned_cols=69  Identities=14%  Similarity=0.214  Sum_probs=64.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR  483 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~  483 (536)
                      ++|++|+.+|++||+++|+++.+++++|.+++ ..|++++|+.+|++|++++|+|+.+...++.+.....
T Consensus        76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             hhcccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999988 6999999999999999999999999999998765543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=3.2e-08  Score=93.64  Aligned_cols=107  Identities=13%  Similarity=-0.027  Sum_probs=90.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-C
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---------VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVR-N  484 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---------~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~-G  484 (536)
                      ..++|+.+|+++|+++|++..+|+..+.++..         ..+++++|+.+|+++++.+|+++.++..+|.++...+ +
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            44799999999999999999999888776542         2334899999999999999999999999998876643 3


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCCc
Q 009385          485 DLWAAEETFLEAISADPTNSYYA-ANYANFLWNTGGED  521 (536)
Q Consensus       485 D~eEAee~feKALeLDPdNpeal-~NyA~~L~elGr~E  521 (536)
                      ++++|+.+++++++++|.+..++ +..+.++...|..+
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH
Confidence            68999999999999999999875 56778887788754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.5e-08  Score=96.02  Aligned_cols=113  Identities=12%  Similarity=0.117  Sum_probs=92.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .+++++|...|++|++..|.+...+..+|.+.+...|+.+.|..+|++++...|+++..+..|+.++... |++++|..+
T Consensus       147 ~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~-g~~~~aR~~  225 (308)
T d2onda1         147 AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL-NEDNNTRVL  225 (308)
T ss_dssp             HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc-CChHHHHHH
Confidence            3788889999999999999999988888876554458888999999999999999999999998887764 689999999


Q ss_pred             HHHHHHhCCCCH----HHHHHHHHHHHHcCCCccccCC
Q 009385          493 FLEAISADPTNS----YYAANYANFLWNTGGEDTCFPL  526 (536)
Q Consensus       493 feKALeLDPdNp----eal~NyA~~L~elGr~E~clpl  526 (536)
                      |++|++..|.++    .++..|..+....|+.+.+..+
T Consensus       226 fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~  263 (308)
T d2onda1         226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV  263 (308)
T ss_dssp             HHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999877654    3677888888888887765543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.76  E-value=1.7e-08  Score=88.26  Aligned_cols=68  Identities=19%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~  482 (536)
                      +++++|+..|.+||+++|+++.+|+++|.++. ..|++++|+.+|++|++++|+|..++..++.+....
T Consensus        91 ~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          91 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999988 699999999999999999999999999998876543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.75  E-value=2.9e-08  Score=87.16  Aligned_cols=83  Identities=10%  Similarity=0.159  Sum_probs=70.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +++++|+.+|.++|.++|++..+++++|.++. ..|++++|+.+|+++++++|+|+.++..++.+........+...+.|
T Consensus        78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~  156 (168)
T d1kt1a1          78 REYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTY  156 (168)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            89999999999999999999999999999888 69999999999999999999999999999987655432233444444


Q ss_pred             HHHH
Q 009385          494 LEAI  497 (536)
Q Consensus       494 eKAL  497 (536)
                      .+..
T Consensus       157 ~~~f  160 (168)
T d1kt1a1         157 ANMF  160 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.73  E-value=2.9e-09  Score=102.48  Aligned_cols=107  Identities=13%  Similarity=0.120  Sum_probs=82.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEET  492 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~  492 (536)
                      .|++++|+..|+++|+.+|+|+.++.+||.+|+ ..|++++|++.|+++++++|++..++.+|+.++... +..+++...
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~-~~~~~a~~~   86 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA-QARKDFAQG   86 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HHHHHHTTS
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc-cccHHHHHH
Confidence            389999999999999999999999999999988 699999999999999999999999999999876543 244444444


Q ss_pred             HHHHHH-hCCCCHHHHHHHHHHHHHcCCCc
Q 009385          493 FLEAIS-ADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       493 feKALe-LDPdNpeal~NyA~~L~elGr~E  521 (536)
                      +.++.. .+|.+...+...+..+...|+.+
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~  116 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMVSQDYE  116 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHhCCCHH
Confidence            433322 23444444555566666666543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.6e-09  Score=111.12  Aligned_cols=104  Identities=11%  Similarity=-0.053  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETF  493 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~f  493 (536)
                      +.|..|+..|++++.++|++..++.++|..+. ..+++++|...+++++..+|.  .++.++|.++.. ++++++|+.+|
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~-~~~~~~A~~~y  175 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISN-KQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARY-RNQTSQAESYY  175 (497)
T ss_dssp             HHHHHHHHHHTC--------------------------------CCHHHHHHHH--HHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHH-hCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH-cccHHHHHHHH
Confidence            67888888899999999999999999998877 689999999999999998875  688899998766 57999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCCc
Q 009385          494 LEAISADPTNSYYAANYANFLWNTGGED  521 (536)
Q Consensus       494 eKALeLDPdNpeal~NyA~~L~elGr~E  521 (536)
                      ++|++++|+++.+++++|.++...|+..
T Consensus       176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~  203 (497)
T d1ya0a1         176 RHAAQLVPSNGQPYNQLAILASSKGDHL  203 (497)
T ss_dssp             HHHHHHCTTBSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCchHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999999999864

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=9.8e-09  Score=96.63  Aligned_cols=110  Identities=9%  Similarity=-0.091  Sum_probs=86.5

Q ss_pred             CCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQE------PNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWR  481 (536)
Q Consensus       414 gdyeeAee~YqKALeLd------Pdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e  481 (536)
                      ++|++|+.+|.+|+++.      ++-..+|.++|.++. ..|++++|+++|++++++.+.+      ..++.++|.++..
T Consensus        51 ~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (290)
T d1qqea_          51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (290)
T ss_dssp             TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence            78999999999999873      333467888898776 6899999999999999987766      5678888877655


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCCcccc
Q 009385          482 VRNDLWAAEETFLEAISADPTN------SYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       482 ~~GD~eEAee~feKALeLDPdN------peal~NyA~~L~elGr~E~cl  524 (536)
                      ..|++++|+.+|++|+++.+..      ..++.++|.++..+|++++++
T Consensus       130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~  178 (290)
T d1qqea_         130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (290)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence            4578999999999998874432      344788999999999876543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.64  E-value=6.8e-08  Score=83.87  Aligned_cols=66  Identities=15%  Similarity=0.082  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLW  480 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~  480 (536)
                      +++++|+.+|++||+++|++..+|+++|.+++ ..|++++|+.+|+++++++|+|..+...++.+..
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999988 6999999999999999999999999999987654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.64  E-value=1.1e-07  Score=85.96  Aligned_cols=98  Identities=9%  Similarity=0.024  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDP----------------------LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAES  471 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~----------------------eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeA  471 (536)
                      |++++|+.+|.+||.+.+++.                      .++.+++.++. ..|++++|+.+++++|+++|.+..+
T Consensus        25 g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~al~~~P~~e~~  103 (179)
T d2ff4a2          25 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREPL  103 (179)
T ss_dssp             TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             CCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHhCCccHHH
Confidence            899999999999999877653                      56788888877 6999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHH
Q 009385          472 FSKYASFLWRVRNDLWAAEETFLEA-------ISADPTNSYYAANYANFL  514 (536)
Q Consensus       472 L~nLG~~L~e~~GD~eEAee~feKA-------LeLDPdNpeal~NyA~~L  514 (536)
                      |.+++.+++.. |++.+|+..|+++       +-++|. +....-+..++
T Consensus       104 ~~~l~~al~~~-Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~l~~l~~~il  151 (179)
T d2ff4a2         104 WTQLITAYYLS-DRQSDALGAYRRVKTTLADDLGIDPG-PTLRALNERIL  151 (179)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHSCCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHH
Confidence            99999998874 7999999999998       446785 44444444444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=4.9e-08  Score=92.29  Aligned_cols=90  Identities=14%  Similarity=0.168  Sum_probs=61.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCCHHHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----ESFSKYASFLWRVRNDLWAA  489 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----eAL~nLG~~L~e~~GD~eEA  489 (536)
                      ++.+.|...|++++...|+++.+|..|+.++. ..|++++|..+|++|++..|.++    ..+..+..+-.. .|+.+.+
T Consensus       183 ~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~-~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~-~G~~~~~  260 (308)
T d2onda1         183 KDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS-HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN-IGDLASI  260 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH-HSCHHHH
T ss_pred             cCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH-cCCHHHH
Confidence            56777777777777777777777777777666 46777777777777777666443    355555554433 3577777


Q ss_pred             HHHHHHHHHhCCCCHH
Q 009385          490 EETFLEAISADPTNSY  505 (536)
Q Consensus       490 ee~feKALeLDPdNpe  505 (536)
                      .+.++++.++.|+...
T Consensus       261 ~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         261 LKVEKRRFTAFREEYE  276 (308)
T ss_dssp             HHHHHHHHHHTTTTTS
T ss_pred             HHHHHHHHHHCccccc
Confidence            7777777777776654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=7.7e-08  Score=86.14  Aligned_cols=107  Identities=16%  Similarity=0.124  Sum_probs=88.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHh
Q 009385          414 ADYFRTELLYQTGLAQEPNDP-----LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLWRV  482 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~-----eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~e~  482 (536)
                      |++++|+.+|++||+..|++.     .++.++|.+++ ..|++++|+.+|++++++.|.+      ..++.+++.++.. 
T Consensus        26 g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-  103 (366)
T d1hz4a_          26 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-  103 (366)
T ss_dssp             TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-
T ss_pred             CCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH-
Confidence            899999999999999999873     57888998888 6899999999999999986544      3567778877766 


Q ss_pred             cCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCCcc
Q 009385          483 RNDLWAAEETFLEAISADPT--------NSYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       483 ~GD~eEAee~feKALeLDPd--------Npeal~NyA~~L~elGr~E~  522 (536)
                      .+++.+|...+.+++.+.+.        ...++..+|.++...|+.+.
T Consensus       104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  151 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE  151 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhh
Confidence            47999999999999986432        22457788999999998653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.50  E-value=7.1e-08  Score=83.51  Aligned_cols=89  Identities=19%  Similarity=0.030  Sum_probs=71.7

Q ss_pred             HHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 009385          434 PLLLANY--AQFLYIVAHDYDRAEEYFKRAIAVEPPD------------AESFSKYASFLWRVRNDLWAAEETFLEAISA  499 (536)
Q Consensus       434 ~eAL~NL--A~lL~e~~GD~deAEe~FeKALeLDPdd------------aeAL~nLG~~L~e~~GD~eEAee~feKALeL  499 (536)
                      ..++.++  |..++ ..|+|++|+..|++||+++|++            +.+|+++|.++... |++++|+..|++|+++
T Consensus         7 a~a~~~l~~g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l-g~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           7 VGAYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc-CccchhhHhhhhhhhc
Confidence            3455555  55666 5799999999999999999875            36789999998875 6999999999999998


Q ss_pred             CCCC-----------HHHHHHHHHHHHHcCCCcccc
Q 009385          500 DPTN-----------SYYAANYANFLWNTGGEDTCF  524 (536)
Q Consensus       500 DPdN-----------peal~NyA~~L~elGr~E~cl  524 (536)
                      .|.+           ..+++++|.+|..+|+.|+++
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~  120 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM  120 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHH
Confidence            6532           336889999999999987544

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1.9e-07  Score=87.56  Aligned_cols=107  Identities=13%  Similarity=0.058  Sum_probs=88.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHH
Q 009385          413 YADYFRTELLYQTGLAQEPND------PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD------AESFSKYASFLW  480 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn------~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd------aeAL~nLG~~L~  480 (536)
                      .+++++|+.+|++++++.+++      ..++.++|.++....|++++|+++|++|+++.+.+      ..++.++|.++.
T Consensus        90 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~  169 (290)
T d1qqea_          90 GGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA  169 (290)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence            389999999999999997766      57788888877644699999999999999885432      466899999888


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCC
Q 009385          481 RVRNDLWAAEETFLEAISADPTNS-------YYAANYANFLWNTGGE  520 (536)
Q Consensus       481 e~~GD~eEAee~feKALeLDPdNp-------eal~NyA~~L~elGr~  520 (536)
                      .. |++++|+.+|++++.+.|.++       .++.+.+.++...|+.
T Consensus       170 ~~-g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~  215 (290)
T d1qqea_         170 LD-GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA  215 (290)
T ss_dssp             HT-TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred             Hc-ChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccH
Confidence            75 699999999999999998875       3456777777778864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.28  E-value=4.9e-07  Score=86.64  Aligned_cols=73  Identities=21%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 009385          447 VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRVRNDLWAAEETFLEAISADPTNSYYAANYANFLWNTGGE  520 (536)
Q Consensus       447 ~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~~GD~eEAee~feKALeLDPdNpeal~NyA~~L~elGr~  520 (536)
                      ..|++++|+..|+++|+.+|+|+.++.+||.+|... |++++|++.|+++++++|++..++.+|+.++...+..
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~-G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~   80 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCID-GDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR   80 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence            479999999999999999999999999999998875 7999999999999999999999999999988766543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.23  E-value=2.2e-06  Score=77.14  Aligned_cols=88  Identities=7%  Similarity=-0.072  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHhcCCHHHHHH
Q 009385          434 PLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDA----------------------ESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       434 ~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdda----------------------eAL~nLG~~L~e~~GD~eEAee  491 (536)
                      -+.+.+.|..+. ..|++++|..+|.+||.+.|++.                      .++.+++.++... |++++|+.
T Consensus        11 f~~~~~~g~~~~-~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~-g~~~~Al~   88 (179)
T d2ff4a2          11 FVAEKTAGVHAA-AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIAC-GRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCchHHHH
Confidence            356777887777 68999999999999999987663                      5678888888764 79999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCccc
Q 009385          492 TFLEAISADPTNSYYAANYANFLWNTGGEDTC  523 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~elGr~E~c  523 (536)
                      +++++++++|.+..++.+++.+|...|+.+++
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eA  120 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDA  120 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHH
Confidence            99999999999999999999999999986543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.3e-06  Score=77.92  Aligned_cols=93  Identities=17%  Similarity=0.095  Sum_probs=75.6

Q ss_pred             HhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 009385          428 AQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPD-----AESFSKYASFLWRVRNDLWAAEETFLEAISADPT  502 (536)
Q Consensus       428 eLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPdd-----aeAL~nLG~~L~e~~GD~eEAee~feKALeLDPd  502 (536)
                      ..++-+++++.-.|.++. ..|++++|+++|+++|+..|++     ..++..+|.++... |++++|+.+|++|+++.|.
T Consensus         6 ~~~~~~ae~~~lrA~~~~-~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~~~   83 (366)
T d1hz4a_           6 REDTMHAEFNALRAQVAI-NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQ   83 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHh
Confidence            334445677777888877 6999999999999999999987     45888999988875 7999999999999998654


Q ss_pred             C------HHHHHHHHHHHHHcCCCcc
Q 009385          503 N------SYYAANYANFLWNTGGEDT  522 (536)
Q Consensus       503 N------peal~NyA~~L~elGr~E~  522 (536)
                      .      ...+.+++.++...|+.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (366)
T d1hz4a_          84 HDVWHYALWSLIQQSEILFAQGFLQT  109 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3      2357788999999998644

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=6.2e-06  Score=69.53  Aligned_cols=93  Identities=10%  Similarity=0.047  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RNDLWAAEE  491 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD~eEAee  491 (536)
                      |+++|+.+|++|.+.+  ++.+.++++..   ...++++|.++|+++.+  .+++.+.++||.++..-   ..|+++|++
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~~---~~~~~~~a~~~~~~aa~--~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVSN---SQINKQKLFQYLSKACE--LNSGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHTC---TTSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhccc---cccCHHHHHHHHhhhhc--ccchhhhhhHHHhhhhccccchhhHHHHH
Confidence            5566666666666543  44455555531   23556666666666654  34566666666554431   125566666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH
Q 009385          492 TFLEAISADPTNSYYAANYANFLWN  516 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA~~L~e  516 (536)
                      +|++|.+.  .++.+.+++|.++..
T Consensus        81 ~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          81 YYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHhhhhcc--CcchHHHHHHHHHHc
Confidence            66666553  445556666665543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=5.3e-06  Score=72.49  Aligned_cols=95  Identities=9%  Similarity=-0.079  Sum_probs=74.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCCHHHHHH
Q 009385          415 DYFRTELLYQTGLAQEPNDPLLLANYAQFLYI--VAHDYDRAEEYFKRAIAVEPPDA-ESFSKYASFLWRVRNDLWAAEE  491 (536)
Q Consensus       415 dyeeAee~YqKALeLdPdn~eAL~NLA~lL~e--~~GD~deAEe~FeKALeLDPdda-eAL~nLG~~L~e~~GD~eEAee  491 (536)
                      ++..-..-|.+.+.-.|. ..+.++||..|..  ...+.++|+.+|+++++.+|.+. +.+++||..+++. |+|++|+.
T Consensus        17 el~~~~~q~~~e~~~~~s-~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yykl-gdy~~A~~   94 (124)
T d2pqrb1          17 QLEILRQQVVSEGGPTAT-IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKL-GEYSMAKR   94 (124)
T ss_dssp             HHHHHHHHHHHTTGGGSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCC-cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH-hhHHHHHH
Confidence            444445555555444454 7899999987762  23467899999999999999875 8999999999885 69999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHH
Q 009385          492 TFLEAISADPTNSYYAANYA  511 (536)
Q Consensus       492 ~feKALeLDPdNpeal~NyA  511 (536)
                      +++++|+++|+|.++..-.-
T Consensus        95 ~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          95 YVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHccCCCcHHHHHHHH
Confidence            99999999999999865443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.05  E-value=2.6e-05  Score=65.61  Aligned_cols=84  Identities=14%  Similarity=0.072  Sum_probs=71.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD~e  487 (536)
                      .++++|+.+|++|.+.  +++.+.+++|.++..   ...|+++|.++|++|.+.  .++.+.++||.++..-   .+|++
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence            6899999999999875  689999999987652   135799999999999865  6899999999987762   35899


Q ss_pred             HHHHHHHHHHHhCC
Q 009385          488 AAEETFLEAISADP  501 (536)
Q Consensus       488 EAee~feKALeLDP  501 (536)
                      +|+.+|++|.++..
T Consensus       113 ~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         113 QAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999998754

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.86  E-value=8.1e-05  Score=67.17  Aligned_cols=99  Identities=9%  Similarity=0.120  Sum_probs=78.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCH
Q 009385          413 YADYFRTELLYQTGLAQEPNDPLLLANYAQFLYI---VAHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RNDL  486 (536)
Q Consensus       413 ~gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e---~~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD~  486 (536)
                      .+|+.+|+++|++|.+.  +|+.++++||.++..   ...++..|..+++++..  ++++.+..++|.++...   ..+.
T Consensus        15 ~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l~~~~~~~~~~~~~~   90 (265)
T d1ouva_          15 EKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLLGNLYYSGQGVSQNT   90 (265)
T ss_dssp             TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhccccccccccccchhh
Confidence            47999999999999775  689999999988763   15689999999999874  55889999999876542   2578


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 009385          487 WAAEETFLEAISADPTNSYYAANYANFLWNT  517 (536)
Q Consensus       487 eEAee~feKALeLDPdNpeal~NyA~~L~el  517 (536)
                      ++|..+|++++...+  ..+..+++..+...
T Consensus        91 ~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~  119 (265)
T d1ouva_          91 NKALQYYSKACDLKY--AEGCASLGGIYHDG  119 (265)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhhhhhh--hhHHHhhcccccCC
Confidence            999999999988654  55667777777653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=2.8e-05  Score=67.77  Aligned_cols=65  Identities=12%  Similarity=0.004  Sum_probs=58.1

Q ss_pred             ccCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 009385          412 DYADYFRTELLYQTGLAQEPNDP-LLLANYAQFLYIVAHDYDRAEEYFKRAIAVEPPDAESFSKYAS  477 (536)
Q Consensus       412 d~gdyeeAee~YqKALeLdPdn~-eAL~NLA~lL~e~~GD~deAEe~FeKALeLDPddaeAL~nLG~  477 (536)
                      +..+..+++.+++.+++.+|.+. +.++++|..++ ..|+|++|.++++++|+++|+|..+....-.
T Consensus        50 ~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          50 DVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            44689999999999999999775 89999999988 6999999999999999999999999765543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.71  E-value=6.7e-05  Score=67.74  Aligned_cols=86  Identities=10%  Similarity=0.081  Sum_probs=71.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---cCCHH
Q 009385          414 ADYFRTELLYQTGLAQEPNDPLLLANYAQFLYIV---AHDYDRAEEYFKRAIAVEPPDAESFSKYASFLWRV---RNDLW  487 (536)
Q Consensus       414 gdyeeAee~YqKALeLdPdn~eAL~NLA~lL~e~---~GD~deAEe~FeKALeLDPddaeAL~nLG~~L~e~---~GD~e  487 (536)
                      .+...+..+++++.+  ++++.+++++|.++...   .+|+++|+.+|++|.+.  +++.++++||.++..-   .+|++
T Consensus       160 ~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~  235 (265)
T d1ouva_         160 KDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEK  235 (265)
T ss_dssp             CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCST
T ss_pred             cccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHH
Confidence            688899999999886  56899999999876621   46899999999999887  5899999999877642   23899


Q ss_pred             HHHHHHHHHHHhCCCC
Q 009385          488 AAEETFLEAISADPTN  503 (536)
Q Consensus       488 EAee~feKALeLDPdN  503 (536)
                      +|+++|++|..+....
T Consensus       236 ~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         236 QAIENFKKGCKLGAKG  251 (265)
T ss_dssp             THHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHCcCHH
Confidence            9999999999987644