Citrus Sinensis ID: 009433

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-----

MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDAVSDGRRSEYREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWESNRKGMIVFPSKRKASMDNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL

cccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccEEcccccccEEEccccccHHHHHHcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccc

cccccHHHHHHHHHHcccccEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccHHHHHHccccccccccEEEEEEEEEcccccccccccccccccccccHHccccccccccccccEEEHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHcHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccEccccccccccccccHccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHcHHHccccccccEEEcc

MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTvltandvdsalnlrnvepiygfasgdsLRFKRAsglkdlyyiddkdvelrnvietplpkapldtsVAVHWLAIegvqpaipenapvdavsdgrrseyredgisvdirlpVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAmdsglhplvpyFTYFISEEVVTRSLKNFSLLFALMRVARSLlrnphihiepylhqmmPSVITCLVSkrlgnrfsdnhWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAfldptkslsQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAaglcvydrlktvllrppkqsrwesnrkgmivfpskrkasmdnlmlqppvkkmatlgpmgvmpvnsmavnmqgpsggfstpvegprAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFgesmfsftrkselyffl

MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPiygfasgdslrfKRASGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEgvqpaipenapvdavsdgRRSEyredgisvdirlpvkhVLSKELQLYFDKIReltvsrsnSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLlrppkqsrwesnrkgmivfpskrkasmdNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL

*******TIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAI*******************DGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLR***********************************************************************************************TSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFF*

****PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIE***************************************LSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEP**************EAWRVYGALQCAAGLCV**********************************************************************************************************************EGGHLLASLYELFGESMFSFTRKSELYFFL

*SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDAV************ISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRPPKQSRWESNRKGMI*********************************************************************************STVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSELYFFL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		535	2.2.26 [Sep-21-2011]
O74462		452	Transcription initiation	yes	no	0.682	0.807	0.437	8e-86
Q91857		618	Transcription initiation	N/A	no	0.644	0.558	0.393	3e-74
Q62311		678	Transcription initiation	yes	no	0.646	0.510	0.379	1e-72
Q63801		678	Transcription initiation	no	no	0.646	0.510	0.379	2e-72
P49848		677	Transcription initiation	yes	no	0.646	0.511	0.377	3e-72
P49847		606	Transcription initiation	yes	no	0.667	0.589	0.388	4e-69
P53040		516	Transcription initiation	yes	no	0.629	0.653	0.364	6e-65
Q8R2K4		616	TAF6-like RNA polymerase	no	no	0.656	0.569	0.303	3e-39
Q9Y6J9		622	TAF6-like RNA polymerase	no	no	0.656	0.564	0.301	1e-37

>sp\|O74462\|TAF6_SCHPO Transcription initiation factor TFIID subunit 6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=taf6 PE=1 SV=1	Back alignment and function desciption

 Score =  318 bits (814), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 174/398 (43%), Positives = 254/398 (63%), Gaps = 33/398 (8%)

Query: 7   ETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALN 66
           E+I+ +A+ +G+ NL+ + A A+A D+EYR+ +++QEA K M H+ RTVLT+ D+ SAL 
Sbjct: 9   ESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSALR 68

Query: 67  LRNVEPIYGFASGDSLRFKRAS---GLKDLYYIDDKDVELRNVIETPLPKAPLDTSVAVH 123
             NVEP+YGF +   L F  A+   G   LYY+DD++V+   +I  PLPK P + S + H
Sbjct: 69  TLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSAH 128

Query: 124 WLAIEGVQPAIPEN-APVD------------AVSDGRRSEYRE--DGIS----VDIRLPV 164
           WLAIEGVQPAIP+N  P D             V  G  +  +E  +G++    V+I+  V
Sbjct: 129 WLAIEGVQPAIPQNPTPSDHTVGEWASKGTSGVMPGASTAAKEARNGVTSMDNVEIKPLV 188

Query: 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRS 224
           +HVLSKELQLYF++I    +  +N  +   AL SL  D GLH L+PYF  F+S+ V TR+
Sbjct: 189 RHVLSKELQLYFERITSALLDETNVELRDAALSSLRDDPGLHQLLPYFIMFLSDSV-TRN 247

Query: 225 LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDN-HWDLRNF 283
           L N  +L  LM +A +LL NP++ +EPY+ Q+MPS++TCLV+KRLG+  +++ H+ LR+ 
Sbjct: 248 LGNLVVLTTLMHMAWALLDNPNLFVEPYVQQLMPSILTCLVAKRLGSDPNNHEHYALRDL 307

Query: 284 VADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLI 343
            A L+  +C RFG+VY  L+ RVTRT L AFLD TK  S HYGAI+GL  +G   + +L+
Sbjct: 308 AAFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPYSTHYGAIKGLKTMGKEAIRVLV 367

Query: 344 LPNLELYLKFLEPEMLLEKQKNEMKRHEAWRVYGALQC 381
           +PN+++Y      E+L+ K   +    E   +Y A +C
Sbjct: 368 VPNIKVY------EVLVRKTLEKGNEEE---IYEANKC 396

TAFs are components of the transcription factor IID (TFIID) complex that are essential for mediating regulation of RNA polymerase transcription.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp\|Q91857\|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis GN=taf6 PE=2 SV=3	Back alignment and function description

>sp\|Q62311\|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus GN=Taf6 PE=2 SV=1	Back alignment and function description

>sp\|Q63801\|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus norvegicus GN=Taf6 PE=2 SV=1	Back alignment and function description

>sp\|P49848\|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens GN=TAF6 PE=1 SV=1	Back alignment and function description

>sp\|P49847\|TAF6_DROME Transcription initiation factor TFIID subunit 6 OS=Drosophila melanogaster GN=Taf6 PE=1 SV=2	Back alignment and function description

>sp\|P53040\|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1 SV=1	Back alignment and function description

>sp\|Q8R2K4\|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2 SV=1	Back alignment and function description

>sp\|Q9Y6J9\|TAF6L_HUMAN TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		535
225460839		543	PREDICTED: transcription initiation fact	0.996	0.981	0.708	0.0
297737507		547	unnamed protein product [Vitis vinifera]	0.996	0.974	0.701	0.0
224056415		529	predicted protein [Populus trichocarpa]	0.970	0.981	0.687	0.0
115436920		541	Os01g0510800 [Oryza sativa Japonica Grou	0.998	0.987	0.636	0.0
225446952		543	PREDICTED: transcription initiation fact	0.996	0.981	0.644	0.0
219887973		545	unknown [Zea mays] gi\|413956299\|gb\|AFW88	0.998	0.979	0.626	0.0
357157836		545	PREDICTED: transcription initiation fact	0.990	0.972	0.62	0.0
326488229		547	predicted protein [Hordeum vulgare subsp	0.992	0.970	0.626	0.0
356499648		544	PREDICTED: transcription initiation fact	0.998	0.981	0.647	0.0
224129098		532	predicted protein [Populus trichocarpa]	0.979	0.984	0.642	0.0

>gi\|225460839\|ref\|XP_002276969.1\| PREDICTED: transcription initiation factor TFIID subunit 6-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/545 (70%), Positives = 449/545 (82%), Gaps = 12/545 (2%)

Query: 1   MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
           MSIVPKETIEVIAQSIG+ N S DVA ALA DVEYRVREIMQEAIKCMRH+ RT+LT ND
Sbjct: 1   MSIVPKETIEVIAQSIGISNFSPDVAPALATDVEYRVREIMQEAIKCMRHSKRTILTVND 60

Query: 61  VDSALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDDKDVELRNVIETPLPKAPLDTSV 120
           VDSAL LRNVEP+YGF SG   +FKRA+G KDL+Y+DDKDVE +++IE PLPK PLDT V
Sbjct: 61  VDSALKLRNVEPLYGFTSGGPRQFKRAAGHKDLFYVDDKDVEFKDLIEAPLPKTPLDTGV 120

Query: 121 AVHWLAIEGVQPAIPENAPVDAV---SDGRRSEYREDGISVDIRLPVKHVLSKELQLYFD 177
             HWLAIEGVQPAI ENAP++A+   SD ++SEY+EDG+ VD +LPVKHVLS+ELQLYFD
Sbjct: 121 ITHWLAIEGVQPAISENAPIEALAVPSDNKKSEYKEDGLPVDTKLPVKHVLSRELQLYFD 180

Query: 178 KIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRV 237
           KI+ELT+SRS+S +FK+AL+SLA DSG+HPLVPYFTYFI++EV TR+L +FS+LFALMRV
Sbjct: 181 KIKELTLSRSDSILFKEALVSLATDSGIHPLVPYFTYFIADEV-TRNLNDFSILFALMRV 239

Query: 238 ARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGH 297
           ARSLL+N  IHIEPYLHQ+MPS+ITCLV+KRLG+RFSDNHW+LR+F A+L+AS+C R+GH
Sbjct: 240 ARSLLQNQQIHIEPYLHQLMPSIITCLVAKRLGSRFSDNHWELRSFTANLVASVCKRYGH 299

Query: 298 VYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPE 357
           VY NLQ RVTRTLLHAFLDPTK+L QHYGAIQGLAA GPSVV LLILPNLE YL+ LEPE
Sbjct: 300 VYHNLQPRVTRTLLHAFLDPTKALPQHYGAIQGLAAFGPSVVRLLILPNLEPYLRLLEPE 359

Query: 358 MLLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTV--LLRPPKQSRWESNRKGMIVFP 415
           M LEKQKN MKRHEAWRVYGAL CAAG C+YDRLKT   LL PP ++  +SN+K +   P
Sbjct: 360 MQLEKQKNGMKRHEAWRVYGALLCAAGTCMYDRLKTFPNLLSPPTRAILKSNKKILPTKP 419

Query: 416 SKRKASMDNLMLQPPVKKMATLGPMGVMPVNSMAVNMQGPSGGFSTPVEGPRAGV---SM 472
           SKRKAS DNLM QPP+KK+AT G MGVMP+NS+AV+ QG +GGFST      + V   SM
Sbjct: 420 SKRKASTDNLMQQPPLKKLATDGSMGVMPINSLAVDKQGLTGGFSTSTAVGSSDVGLSSM 479

Query: 473 LRHLQNEKML--RREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMFSFTRKSE 530
            + L +E +   RREV  +ALK S VLAQAWK D   G L ASL+E FGESMF FT   E
Sbjct: 480 SQQLASENISGGRREVGTRALKASAVLAQAWK-DVNAGQLSASLFEYFGESMFCFTPSPE 538

Query: 531 LYFFL 535
           L  FL
Sbjct: 539 LSLFL 543

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297737507\|emb\|CBI26708.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224056415\|ref\|XP_002298845.1\| predicted protein [Populus trichocarpa] gi\|222846103\|gb\|EEE83650.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|115436920\|ref\|NP_001043168.1\| Os01g0510800 [Oryza sativa Japonica Group] gi\|20804496\|dbj\|BAB92191.1\| putative TAF6 [Oryza sativa Japonica Group] gi\|113532699\|dbj\|BAF05082.1\| Os01g0510800 [Oryza sativa Japonica Group] gi\|215768003\|dbj\|BAH00232.1\| unnamed protein product [Oryza sativa Japonica Group] gi\|222618539\|gb\|EEE54671.1\| hypothetical protein OsJ_01969 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|225446952\|ref\|XP_002264290.1\| PREDICTED: transcription initiation factor TFIID subunit 6 [Vitis vinifera] gi\|297739126\|emb\|CBI28777.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|219887973\|gb\|ACL54361.1\| unknown [Zea mays] gi\|413956299\|gb\|AFW88948.1\| putative TATA binding protein family protein [Zea mays]	Back alignment and taxonomy information

>gi\|357157836\|ref\|XP_003577929.1\| PREDICTED: transcription initiation factor TFIID subunit 6-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|326488229\|dbj\|BAJ93783.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|356499648\|ref\|XP_003518649.1\| PREDICTED: transcription initiation factor TFIID subunit 6-like [Glycine max]	Back alignment and taxonomy information

>gi\|224129098\|ref\|XP_002320500.1\| predicted protein [Populus trichocarpa] gi\|222861273\|gb\|EEE98815.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		535
TAIR\|locus:2010667		549	TAFII59 "TATA BOX ASSOCIATED F	0.994	0.969	0.572	2.9e-158
DICTYBASE\|DDB_G0288471		542	taf6 "TATA-binding protein-ass	0.420	0.415	0.473	1.1e-88
ASPGD\|ASPL0000017134		445	AN8232 [Emericella nidulans (t	0.693	0.833	0.393	3.8e-69
UNIPROTKB\|Q91857		618	taf6 "Transcription initiation	0.442	0.383	0.376	3.7e-68
FB\|FBgn0010417		606	Taf6 "TBP-associated factor 6"	0.377	0.333	0.414	1.1e-63
CGD\|CAL0005584		519	TAF60 [Candida albicans (taxid	0.385	0.396	0.370	1.9e-62
UNIPROTKB\|Q5A2V7		519	TAF6 "Putative uncharacterized	0.385	0.396	0.370	1.9e-62
SGD\|S000003080		516	TAF6 "Subunit (60 kDa) of TFII	0.435	0.451	0.354	2.3e-60
POMBASE\|SPCC16C4.18c		452	taf6 "histone H4-like TAF Taf6	0.585	0.692	0.385	5.2e-49
UNIPROTKB\|G8JLM6		601	TAF6 "Transcription initiation	0.439	0.391	0.366	1.5e-48

TAIR\|locus:2010667 TAFII59 "TATA BOX ASSOCIATED FACTOR II 59" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1542 (547.9 bits), Expect = 2.9e-158, P = 2.9e-158
 Identities = 316/552 (57%), Positives = 399/552 (72%)

Query:     1 MSIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTAND 60
             MSIVPKET+EVIAQSIG+ NL  + AL LAPDVEYRVREIMQEAIKCMRH+ RT LTA+D
Sbjct:     1 MSIVPKETVEVIAQSIGITNLLPEAALMLAPDVEYRVREIMQEAIKCMRHSKRTTLTASD 60

Query:    61 VDSALNLRNVEPIYGFASGDSLRFKRASGLKDLYYIDDKDVELRNVIETPLPKAPLDTSV 120
             VD ALNLRNVEPIYGFASG   RF++A G +DL+Y DD++V+ ++VIE PLPKAPLDT +
Sbjct:    61 VDGALNLRNVEPIYGFASGGPFRFRKAIGHRDLFYTDDREVDFKDVIEAPLPKAPLDTEI 120

Query:   121 AVHWLAIEGVQPAIPENAPVDAVSDGRRSEYRE--DGISVDIRLPVKHVLSKELQLYFDK 178
               HWLAIEGVQPAIPENAP++ +     ++  E  DG  +D+RLPVKHVLS+ELQLYF K
Sbjct:   121 VCHWLAIEGVQPAIPENAPLEVIRAPAETKIHEQKDGPLIDVRLPVKHVLSRELQLYFQK 180

Query:   179 IRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVA 238
             I EL +S+SN  ++K+AL+SLA DSGLHPLVPYFT FI++EV +  L +F LLF LM + 
Sbjct:   181 IAELAMSKSNPPLYKEALVSLASDSGLHPLVPYFTNFIADEV-SNGLNDFRLLFNLMHIV 239

Query:   239 RSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHV 298
             RSLL+NPHIHIEPYLHQ+MPSV+TCLVS++LGNRF+DNHW+LR+F A+L++ IC R+G V
Sbjct:   240 RSLLQNPHIHIEPYLHQLMPSVVTCLVSRKLGNRFADNHWELRDFAANLVSLICKRYGTV 299

Query:   299 YQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM 358
             Y  LQSR+TRTL++A LDP K+L+QHYGAIQGLAALG +VV LLIL NLE YL  LEPE+
Sbjct:   300 YITLQSRLTRTLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPEL 359

Query:   359 LLEKQKNEMKRHEAWRVYGALQCAAGLCVYDRLKTVLLRP-PKQSRWESNR-KGMIVF-- 414
               EKQKN+MK +EAWRVYGAL  AAGLC++ RLK     P P  S     + KG I+   
Sbjct:   360 NAEKQKNQMKIYEAWRVYGALLRAAGLCIHGRLKIFPPLPSPSPSFLHKGKGKGKIISTD 419

Query:   415 PSKRKASMDNLMLQPPVKKMATL-GPMGV----------MPVNSMAVNMQGPSGGFSTPV 463
             P KRK S+D+   Q P K++ T+ GP GV          M V++   N   P      P 
Sbjct:   420 PHKRKLSVDSSENQSPQKRLITMDGPDGVHSQDQSGSAPMQVDNPVENDNPPQNSVQ-PS 478

Query:   464 EGPRAGVSMLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESMF 523
                +A  +     +N K+ +    ++A+    +L Q WK+D + G LL  L+EL+G+ + 
Sbjct:   479 SSEQASDANESESRNGKV-KESGRSRAITMKAILDQIWKDDLDSGRLLVKLHELYGDRIL 537

Query:   524 SFTRKSELYFFL 535
              F   +E+  FL
Sbjct:   538 PFIPSTEMSVFL 549

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA;ISS

GO:0051090 "regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0009860 "pollen tube growth" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

DICTYBASE\|DDB_G0288471 taf6 "TATA-binding protein-associated-factor" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000017134 AN8232 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q91857 taf6 "Transcription initiation factor TFIID subunit 6" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

FB\|FBgn0010417 Taf6 "TBP-associated factor 6" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

CGD\|CAL0005584 TAF60 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5A2V7 TAF6 "Putative uncharacterized protein TAF6" [Candida albicans SC5314 (taxid:237561)]	Back alignment and assigned GO terms

SGD\|S000003080 TAF6 "Subunit (60 kDa) of TFIID and SAGA complexes" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

POMBASE\|SPCC16C4.18c taf6 "histone H4-like TAF Taf6, SAGA complex subunit" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

UNIPROTKB\|G8JLM6 TAF6 "Transcription initiation factor TFIID subunit 6" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027245001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (523 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034077001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (177 aa)	•	•	•	0.772
	GSVIVG00032691001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (676 aa)	•	•	•	0.738
	GSVIVG00024845001	RecName- Full=TATA-box-binding protein; (211 aa)	•	•	•	0.637

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		535
cd08050		343	cd08050, TAF6, TATA Binding Protein (TBP) Associat	1e-149
COG5095		450	COG5095, TAF6, Transcription initiation factor TFI	1e-112
pfam07571		92	pfam07571, DUF1546, Protein of unknown function (D	4e-36
pfam02969		66	pfam02969, TAF, TATA box binding protein associate	7e-27
smart00803		65	smart00803, TAF, TATA box binding protein associat	1e-25
COG2036		91	COG2036, HHT1, Histones H3 and H4 [Chromatin struc	2e-04
pfam00125		75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	7e-04

>gnl\|CDD\|173968 cd08050, TAF6, TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

 Score =  430 bits (1107), Expect = e-149
 Identities = 181/344 (52%), Positives = 244/344 (70%), Gaps = 10/344 (2%)

Query: 5   PKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSA 64
           P+E+I++IA+S+G+ +LS +VA  LA DVEYR+REI+QEA K MRH+ R  LT +DV+ A
Sbjct: 1   PQESIKLIAESLGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHA 60

Query: 65  LNLRNVEPIYGFASGDSLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSVAVH 123
           L LRNVEP+YGF+S + L F+ ++G  ++LYY++DK+++L+++I TPLPK PLD SV  H
Sbjct: 61  LRLRNVEPLYGFSSSEPLPFRVSTGGGQELYYVEDKEIDLKDLINTPLPKVPLDVSVKAH 120

Query: 124 WLAIEGVQPAIPENAPVDAVSDGRRSEYREDGI-------SVDIRLPVKHVLSKELQLYF 176
           WLAIEGVQP IPEN P  A+   ++       +        V ++  V+HVLSKELQLYF
Sbjct: 121 WLAIEGVQPLIPENPPPSAIEVQKKESLANAAVKRLKKDEQVLLKPLVRHVLSKELQLYF 180

Query: 177 DKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMR 236
           ++I E  V  SN    ++AL SL  D GL  L+PYF  FI+E V     +N +LL  LMR
Sbjct: 181 EEITEALVG-SNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMR 239

Query: 237 VARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASICTRF 295
           + R+LL NP++H+EPYLHQ++PSV+TCLV+K+L +R   DNHW LR++ A L+A IC +F
Sbjct: 240 MVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKF 299

Query: 296 GHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVV 339
              Y  LQ R+TRTLL A LDP K L+ HYGAI GL+ALGP  V
Sbjct: 300 STSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALGPEAV 343

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as activator-binding sites, core-promoter recognition or a role in essential catalytic activity. These TAFs, with the help of specific activators, are required only for expression of a subset of genes and are not universally involved for transcription as are GTFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. Several TAFs interact via histone-fold (HFD) motifs; the HFD is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamers. The minimal HFD contains three alpha-helices linked by two loops and is found in core histones, TAFs and many other transcription factors. TFIID has a histone octamer-like substructure. TAF6 is a shared subunit of histone acetyltransferase complex SAGA and TFIID complexes. TAF6 domain interacts with TAF9 and makes a novel histone-like heterodimer that is structurally related to histones H4 and H3. TAF6 may also interact with the downstream core promoter element (DPE). Length = 343

>gnl\|CDD\|227426 COG5095, TAF6, Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>gnl\|CDD\|203686 pfam07571, DUF1546, Protein of unknown function (DUF1546)	Back alignment and domain information

>gnl\|CDD\|145884 pfam02969, TAF, TATA box binding protein associated factor (TAF)	Back alignment and domain information

>gnl\|CDD\|129039 smart00803, TAF, TATA box binding protein associated factor	Back alignment and domain information

>gnl\|CDD\|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		535
KOG2549		576	consensus Transcription initiation factor TFIID, s	100.0
COG5095		450	TAF6 Transcription initiation factor TFIID, subuni	100.0
cd08050		343	TAF6 TATA Binding Protein (TBP) Associated Factor	100.0
PF07571		92	DUF1546: Protein of unknown function (DUF1546); In	99.96
PF02969		66	TAF: TATA box binding protein associated factor (T	99.92
smart00803		65	TAF TATA box binding protein associated factor. TA	99.81
cd00076		85	H4 Histone H4, one of the four histones, along wit	99.48
PLN00035		103	histone H4; Provisional	99.48
PTZ00015		102	histone H4; Provisional	99.43
COG2036		91	HHT1 Histones H3 and H4 [Chromatin structure and d	98.94
smart00417		74	H4 Histone H4.	98.89
cd07979		117	TAF9 TATA Binding Protein (TBP) Associated Factor	98.69
smart00576		77	BTP Bromodomain transcription factors and PHD doma	98.41
PF00125		75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	98.25
PF00808		65	CBFD_NFYB_HMF: Histone-like transcription factor (	98.15
cd07981		72	TAF12 TATA Binding Protein (TBP) Associated Factor	98.08
KOG3467		103	consensus Histone H4 [Chromatin structure and dyna	97.92
PF07524		77	Bromo_TP: Bromodomain associated; InterPro: IPR006	97.79
cd00074		115	H2A Histone 2A; H2A is a subunit of the nucleosome	97.67
smart00428		105	H3 Histone H3.	97.64
PF02291		129	TFIID-31kDa: Transcription initiation factor IID,	97.23
PF15630		76	CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C	97.11
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.81
PLN00160		97	histone H3; Provisional	96.43
PTZ00018		136	histone H3; Provisional	96.36
PLN00121		136	histone H3; Provisional	96.36
PLN00161		135	histone H3; Provisional	96.32
KOG3334		148	consensus Transcription initiation factor TFIID, s	96.28
KOG0869		168	consensus CCAAT-binding factor, subunit A (HAP3) [	95.9
cd08048		85	TAF11 TATA Binding Protein (TBP) Associated Factor	95.66
PF15511		414	CENP-T: Centromere kinetochore component CENP-T; P	94.89
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	94.49
COG5094		145	TAF9 Transcription initiation factor TFIID, subuni	94.31
KOG1142		258	consensus Transcription initiation factor TFIID, s	94.24
PF03847		68	TFIID_20kDa: Transcription initiation factor TFIID	94.21
KOG4336		323	consensus TBP-associated transcription factor Prod	93.46
smart00414		106	H2A Histone 2A.	93.38
KOG2389		353	consensus Predicted bromodomain transcription fact	93.16
COG5262		132	HTA1 Histone H2A [Chromatin structure and dynamics	92.95
KOG0870		172	consensus DNA polymerase epsilon, subunit D [Trans	92.85
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	92.76
PLN00154		136	histone H2A; Provisional	92.58
PF04719		90	TAFII28: hTAFII28-like protein conserved region; I	92.12
KOG1756		131	consensus Histone 2A [Chromatin structure and dyna	92.09
smart00427		89	H2B Histone H2B.	91.79
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.78
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	90.96
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	90.9
PTZ00017		134	histone H2A; Provisional	90.82
PTZ00463		117	histone H2B; Provisional	90.37
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	89.75
PLN00158		116	histone H2B; Provisional	89.64
KOG0212		675	consensus Uncharacterized conserved protein [Funct	89.23
PLN00157		132	histone H2A; Provisional	89.22
PLN00156		139	histone H2AX; Provisional	89.17
KOG1745		137	consensus Histones H3 and H4 [Chromatin structure	88.84
PLN00153		129	histone H2A; Provisional	88.24
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	87.23
KOG1824		1233	consensus TATA-binding protein-interacting protein	87.12
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	86.4
PF02269		93	TFIID-18kDa: Transcription initiation factor IID,	85.67
KOG1242		569	consensus Protein containing adaptin N-terminal re	85.0
PF05236		264	TAF4: Transcription initiation factor TFIID compon	84.07
PRK07452		326	DNA polymerase III subunit delta; Validated	84.05
cd07978		92	TAF13 The TATA Binding Protein (TBP) Associated Fa	83.99
cd08045		212	TAF4 TATA Binding Protein (TBP) Associated Factor	83.51
PTZ00252		134	histone H2A; Provisional	82.97
KOG0871		156	consensus Class 2 transcription repressor NC2, bet	82.87
PF09415		72	CENP-X: CENP-S associating Centromere protein X; I	82.84
KOG3423		176	consensus Transcription initiation factor TFIID, s	81.5
PF14911		373	MMS22L_C: S-phase genomic integrity recombination	80.73
PRK06585		343	holA DNA polymerase III subunit delta; Reviewed	80.53
TIGR01128		302	holA DNA polymerase III, delta subunit. subunit ar	80.38
PRK05574		340	holA DNA polymerase III subunit delta; Reviewed	80.28

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.4e-115  Score=924.78  Aligned_cols=529  Identities=40%  Similarity=0.602  Sum_probs=449.9

Q ss_pred             CCCC-hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhccCCCCCCCCCCCC
Q 009433            2 SIVP-KETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNLRNVEPIYGFASGD   80 (535)
Q Consensus         2 s~~~-~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~   80 (535)
                      ++|+ +|+++.+|||+||++|+||+|+.||+||||||+||+|+|.|||+|+||++||++||+.||+++|+||+|||.+++
T Consensus         9 ~v~s~~Es~k~vAEslGi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~nVep~yg~~s~~   88 (576)
T KOG2549|consen    9 TVVSPKESVKVVAESLGITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLNVEPLYGFGAQE   88 (576)
T ss_pred             cccCcHHHHHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcccccccCcccCc
Confidence            4666 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceecCCC-CceeeecCcccChHHhhcCCCCCCCCCCceeEEEEEeccccCCCCCCCCCcC--------CccCcc---
Q 009433           81 SLRFKRASGL-KDLYYIDDKDVELRNVIETPLPKAPLDTSVAVHWLAIEGVQPAIPENAPVDA--------VSDGRR---  148 (535)
Q Consensus        81 pl~f~~~~g~-~~ly~~eD~evdl~~ii~~~lPk~P~~~s~~aHWLaIeGvQP~IPeNp~~~~--------p~~~k~---  148 (535)
                      +++|+++.|+ +++||.+|+||||++++++|+||+|+++++++|||+||||||+|||||++..        +....+   
T Consensus        89 ~i~fr~a~~~~r~ly~~~d~EVD~d~~i~~plpkvP~d~~i~sHWL~iEGVQP~iPeNp~p~~~~~~~~~~~~~~~~~~~  168 (576)
T KOG2549|consen   89 IIPFRKASGGGRELYYPEDEEVDLDEIINAPLPKVPLDVSIKSHWLAIEGVQPAIPENPPPLEKNVQKKEVIEPAIKAPE  168 (576)
T ss_pred             eeeccccCCCCceeecCchhhcchhhhhcCCCCCCCccceeeeeeeeeccccccCCCCCCccccchhhhcccchhhhccC
Confidence            9999998544 8999999999999999999999999999999999999999999999997521        000000   


Q ss_pred             ----------cc---cccCCceeeccCCccccCcHHHHHHHHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhh
Q 009433          149 ----------SE---YREDGISVDIRLPVKHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYF  215 (535)
Q Consensus       149 ----------~~---~k~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~F  215 (535)
                                ++   ....+.++.+||.++|+||+|||+||++||++|++ +++.+|++||++|+||+|||||||||++|
T Consensus       169 ~~~~~~~~~~~~~~~~~k~~e~~~~Kp~~~h~LS~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~TDsGL~~LlPyFv~f  247 (576)
T KOG2549|consen  169 GNNPGASTKSSDAVKTLKIGEPVELKPSSKHVLSVELQLYYKEITEACTG-SDEPLRQEALQSLETDSGLQQLLPYFVTF  247 (576)
T ss_pred             CCCCCccccccccccccccCCcccccccchhhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhccCccHHHHHHHHHHH
Confidence                      00   01235678899999999999999999999999998 66778999999999999999999999999


Q ss_pred             hhchhhhcc--cCChHHHHHHHHHHHHhhcCCCcccccchhhhHHHHHHHHhccccCCCC-CCcchHHHHHHHHHHHHHH
Q 009433          216 ISEEVVTRS--LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRF-SDNHWDLRNFVADLIASIC  292 (535)
Q Consensus       216 I~e~vV~~n--l~nl~~L~~Lmrmv~ALl~Np~L~IepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~  292 (535)
                      |+|+ |+.|  ++|+..|+++|+|++||++||+|++|||||+||||||||+|+|++|.++ .||||+|||+||++|+.||
T Consensus       248 Iae~-vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~  326 (576)
T KOG2549|consen  248 IAEG-VSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQIC  326 (576)
T ss_pred             Hhhh-eeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHH
Confidence            9999 9999  8999999999999999999999999999999999999999999999974 7999999999999999999


Q ss_pred             HHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhChhhhHhhcccchHHHHHhhhhhhhhHhhhhhhhHHHH
Q 009433          293 TRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILPNLELYLKFLEPEMLLEKQKNEMKRHEA  372 (535)
Q Consensus       293 ~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l~~~~~~~~~~r~ea  372 (535)
                      ++|++.|.+|++||++||.|+|+|+++++++|||||+||++||.++|+.+|+|+|..|+..|++++..+..+|.+.+.||
T Consensus       327 k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea  406 (576)
T KOG2549|consen  327 KNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEA  406 (576)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhh--ccCCCccccccccC-cccccCCCCccCccccccCCCCcccccccCC-CCcccc--C
Q 009433          373 WRVYGALQCAAGLCVYDRLKTV--LLRPPKQSRWESNR-KGMIVFPSKRKASMDNLMLQPPVKKMATLGP-MGVMPV--N  446 (535)
Q Consensus       373 ~~v~~aLl~a~g~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~  446 (535)
                      ++||++|+.|+..|+++++...  ...|-.+...++.| .++.....+|+++-++..-.-|.+.+. +++ +..++.  .
T Consensus       407 ~~v~~~llk~~~~ii~~~l~~~~~~~~~~~r~~~~~~g~~l~~e~~~~r~~~l~~~~~~~~~~~l~-~~p~~~~~~~~~~  485 (576)
T KOG2549|consen  407 NKVYGALLKAENPIIRDKLNSAPDNPVPALRRLRGSLGESLLSEVVKKRQAPLDSSSVTLPVQQLV-APPVMSSAQSLTS  485 (576)
T ss_pred             hhHHHHHHHHhhHHHHhhhccccCCCCCcchhhcccccHHHHHHHHhhccCccccccccccccccc-CCccccccccccc
Confidence            9999999999999999999998  33555677777777 888899999987755554444555554 222 111111  1


Q ss_pred             cccccCCCCCCCCCcccCCCCCcc--c--hhhhhhhhhhhhcccccchhhHHHHHHHHhhhccCccchhHHHHHHhcccc
Q 009433          447 SMAVNMQGPSGGFSTPVEGPRAGV--S--MLRHLQNEKMLRREVSNQALKTSTVLAQAWKEDAEGGHLLASLYELFGESM  522 (535)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~s~~l~q~wk~d~~~g~ll~sl~elfge~~  522 (535)
                      .+.+.+.-+..|.|..+..|.+..  +  .-++.+  ..+.+.|-.++...-+..++.|+++.+++..|....+..+.+.
T Consensus       486 ~~~v~~~~~~~g~p~~~t~p~~~~~~~~~~~~~~~--~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~  563 (576)
T KOG2549|consen  486 TQQVSSPTEAPGSPSTSTGPVTSEVPSVVTESTSG--PKVVGPGKSRVVSLPSTGDGKGGATSHSRGVLPPASSPAPLSG  563 (576)
T ss_pred             cceecCCCCCCCCCccCCCCcccCCCCcccccccC--CccccCCCceeeecccccccccCCCCCCCCccccccCCCCCCc
Confidence            111222211112222221111111  0  001111  1333444667777788899999999999999999999999999


Q ss_pred             ccccCCccccccC
Q 009433          523 FSFTRKSELYFFL  535 (535)
Q Consensus       523 l~f~p~~e~~~fl  535 (535)
                      .+|.++.+++.|.
T Consensus       564 ~~~~~~~q~~~~~  576 (576)
T KOG2549|consen  564 SPACGSKQESVDS  576 (576)
T ss_pred             cccccccccccCC
Confidence            9999999999774

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)	Back alignment and domain information

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex	Back alignment and domain information

>smart00803 TAF TATA box binding protein associated factor	Back alignment and domain information

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Back alignment and domain information

>PLN00035 histone H4; Provisional	Back alignment and domain information

>PTZ00015 histone H4; Provisional	Back alignment and domain information

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]	Back alignment and domain information

>smart00417 H4 Histone H4	Back alignment and domain information

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins	Back alignment and domain information

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]	Back alignment and domain information

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin	Back alignment and domain information

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]	Back alignment and domain information

>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)	Back alignment and domain information

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome	Back alignment and domain information

>smart00428 H3 Histone H3	Back alignment and domain information

>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []	Back alignment and domain information

>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PLN00160 histone H3; Provisional	Back alignment and domain information

>PTZ00018 histone H3; Provisional	Back alignment and domain information

>PLN00121 histone H3; Provisional	Back alignment and domain information

>PLN00161 histone H3; Provisional	Back alignment and domain information

>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]	Back alignment and domain information

>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []	Back alignment and domain information

>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]	Back alignment and domain information

>smart00414 H2A Histone 2A	Back alignment and domain information

>KOG2389 consensus Predicted bromodomain transcription factor [Transcription]	Back alignment and domain information

>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]	Back alignment and domain information

>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN00154 histone H2A; Provisional	Back alignment and domain information

>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex	Back alignment and domain information

>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]	Back alignment and domain information

>smart00427 H2B Histone H2B	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PTZ00017 histone H2A; Provisional	Back alignment and domain information

>PTZ00463 histone H2B; Provisional	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PLN00158 histone H2B; Provisional	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN00157 histone H2A; Provisional	Back alignment and domain information

>PLN00156 histone H2AX; Provisional	Back alignment and domain information

>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]	Back alignment and domain information

>PLN00153 histone H2A; Provisional	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18)	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site	Back alignment and domain information

>PRK07452 DNA polymerase III subunit delta; Validated	Back alignment and domain information

>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex	Back alignment and domain information

>PTZ00252 histone H2A; Provisional	Back alignment and domain information

>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]	Back alignment and domain information

>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex	Back alignment and domain information

>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]	Back alignment and domain information

>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal	Back alignment and domain information

>PRK06585 holA DNA polymerase III subunit delta; Reviewed	Back alignment and domain information

>TIGR01128 holA DNA polymerase III, delta subunit	Back alignment and domain information

>PRK05574 holA DNA polymerase III subunit delta; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		535
4atg_A		196	Taf6 C-Terminal Domain From Antonospora Locustae Le		1e-26
1taf_B		70	Drosophila Tbp Associated Factors Dtafii42DTAFII62		3e-08

>pdb|4ATG|A Chain A, Taf6 C-Terminal Domain From Antonospora Locustae Length = 196

Back alignment and structure

Iteration: 1

Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 11/185 (5%) Query: 166 HVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSL 225 H+L KELQLYFDKI +S S + A+ L +SGL LVPYF ISE ++ +S Sbjct: 3 HMLPKELQLYFDKI----LSMIKSDMKDIAIECLEKESGLQQLVPYFIQHISE-LILKSF 57 Query: 226 KNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVA 285 K +L + + SL++N H+ I+PYLHQ++PS++TC++ K + + D+R A Sbjct: 58 KEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSA 111 Query: 286 DLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLILP 345 D++ I + Y+ L RV +TL ++DP +S YGA+ L+ L +VV+ +I Sbjct: 112 DIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIRE 171 Query: 346 NLELY 350 + E Y Sbjct: 172 HAEEY 176

PyMOL of 4atg

>pdb|1TAF|B Chain B, Drosophila Tbp Associated Factors Dtafii42DTAFII62 HETEROTETRAMER Length = 70

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		535
4atg_A		196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	4e-76
1taf_B		70	TFIID TBP associated factor 62; transcription init	6e-25
2yfw_B		103	Histone H4, H4; cell cycle, kinetochore, centromer	2e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04
1id3_B		102	Histone H4; nucleosome core particle, chromatin, p	1e-08
1tzy_D		103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	1e-08
1ku5_A		70	HPHA, archaeal histon; histone fold, DNA binding p	2e-08
2hue_C		84	Histone H4; mini beta sheet, elongated beta sandwh	2e-07
1b67_A		68	Protein (histone HMFA); DNA binding protein; 1.48A	3e-04
2l5a_A		235	Histone H3-like centromeric protein CSE4, protein	5e-04

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Length = 196	Back alignment and structure

 Score =  237 bits (607), Expect = 4e-76
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 11/206 (5%)

Query: 165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRS 224
            H+L KELQLYFDKI  +      S +   A+  L  +SGL  LVPYF   ISE +  +S
Sbjct: 2   SHMLPKELQLYFDKILSMI----KSDMKDIAIECLEKESGLQQLVPYFIQHISELI-LKS 56

Query: 225 LKNFSLLFALMRVARSLLRNPHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFV 284
            K   +L   + +  SL++N H+ I+PYLHQ++PS++TC++ K + +       D+R   
Sbjct: 57  FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMS 110

Query: 285 ADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQHYGAIQGLAALGPSVVHLLIL 344
           AD++  I   +   Y+ L  RV +TL   ++DP +S    YGA+  L+ L  +VV+ +I 
Sbjct: 111 ADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIR 170

Query: 345 PNLELYLKFLEPEMLLEKQKNEMKRH 370
            + E Y + +  + +     N +  H
Sbjct: 171 EHAEEYKRTIGKKKVTNLLDNVLNVH 196

PyMOL of 4atg

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Length = 70	Back alignment and structure

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} Length = 103	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Length = 102	Back alignment and structure

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... Length = 103	Back alignment and structure

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Length = 70	Back alignment and structure

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B Length = 84	Back alignment and structure

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Length = 68	Back alignment and structure

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		535
4atg_A		196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	100.0
1taf_B		70	TFIID TBP associated factor 62; transcription init	99.91
2hue_C		84	Histone H4; mini beta sheet, elongated beta sandwh	99.72
1id3_B		102	Histone H4; nucleosome core particle, chromatin, p	99.69
2yfw_B		103	Histone H4, H4; cell cycle, kinetochore, centromer	99.64
1tzy_D		103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	99.64
1ku5_A		70	HPHA, archaeal histon; histone fold, DNA binding p	99.21
2ly8_A		121	Budding yeast chaperone SCM3; centromere protein,	99.01
1f1e_A		154	Histone fold protein; archaeal histone protein, DN	98.93
2l5a_A		235	Histone H3-like centromeric protein CSE4, protein	98.9
1b67_A		68	Protein (histone HMFA); DNA binding protein; 1.48A	98.87
1taf_A		68	TFIID TBP associated factor 42; transcription init	98.8
3b0c_T		111	CENP-T, centromere protein T; histone fold, DNA bi	98.74
1f1e_A		154	Histone fold protein; archaeal histone protein, DN	98.66
1n1j_A		93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	98.42
3b0c_W		76	CENP-W, centromere protein W; histone fold, DNA bi	98.41
2hue_B		77	Histone H3; mini beta sheet, elongated beta sandwh	98.37
4dra_A		113	Centromere protein S; DNA binding complex, DNA dam	98.37
3b0b_B		107	CENP-S, centromere protein S; histone fold, DNA bi	98.35
3nqj_A		82	Histone H3-like centromeric protein A; alpha helix	98.3
3v9r_A		90	MHF1, uncharacterized protein YOL086W-A; histone f	98.2
3vh5_A		140	CENP-S; histone fold, chromosome segregation, DNA	98.05
1jfi_B		179	DR1 protein, transcription regulator NC2 beta chai	98.01
2byk_B		128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	97.98
1n1j_B		97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	97.9
2yfv_A		100	Histone H3-like centromeric protein CSE4; cell cyc	97.82
3nqu_A		140	Histone H3-like centromeric protein A; alpha helix	97.8
1tzy_C		136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	97.76
2nqb_C		123	Histone H2A; nucleosome, NCP, chromatin, structura	97.72
2f8n_G		120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	97.72
3r45_A		156	Histone H3-like centromeric protein A; histone fol	97.68
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.65
1tzy_A		129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	97.65
2f8n_K		149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	97.62
1id3_C		131	Histone H2A.1; nucleosome core particle, chromatin	97.56
1jfi_A		98	Transcription regulator NC2 alpha chain; histone,	97.56
1f66_C		128	Histone H2A.Z; nucleosome, chromatin, histone vari	97.42
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	97.37
4g92_C		119	HAPE; transcription factor, nucleosome, minor groo	97.35
2jss_A		192	Chimera of histone H2B.1 and histone H2A.Z; histon	97.23
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.22
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.22
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	97.12
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.08
1qgr_A		876	Protein (importin beta subunit); transport recepto	97.07
2nqb_D		123	Histone H2B; nucleosome, NCP, chromatin, structura	96.77
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	96.75
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.74
1tzy_B		126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	96.66
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	96.46
2byk_A		140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	96.04
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	95.9
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	95.73
2jss_A		192	Chimera of histone H2B.1 and histone H2A.Z; histon	95.62
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	95.53
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	95.26
1h3o_B		76	Transcription initiation factor TFIID 20/15 kDa su	95.25
1bh9_B		89	TAFII28; histone fold, tata binding protein, trans	94.99
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	94.82
2l5a_A		235	Histone H3-like centromeric protein CSE4, protein	94.27
4ffb_C		278	Protein STU2; tubulin fold, heat repeats, cytoskel	91.87
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	91.83
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	91.4
4dra_E		84	Centromere protein X; DNA binding complex, DNA dam	91.4
2of3_A		266	ZYG-9; multifunctional macromolecule, kinetochore,	90.44
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	89.66
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	89.26
1h3o_A		75	Transcription initiation factor TFIID 135 kDa subu	89.26
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	89.24
3b0b_C		81	CENP-X, centromere protein X; histone fold, DNA bi	89.05
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	88.83
2x1g_F		971	Cadmus; transport protein, developmental protein,	87.48
2x19_B		963	Importin-13; nuclear transport, protein transport;	87.38
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	86.78
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	86.72
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	86.44
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	86.4
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	85.95
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	85.59
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	85.27
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	85.04
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	84.61
3ltm_A		211	Alpha-REP4; protein engineering, heat-like repeat,	84.3
3ltj_A		201	Alpharep-4; protein engineering, heat-like repeat,	83.45
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	82.99
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	82.83
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	80.76
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	80.16
2x19_B		963	Importin-13; nuclear transport, protein transport;	80.02

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}	Back alignment and structure

Probab=100.00  E-value=9.5e-59  Score=446.75  Aligned_cols=183  Identities=37%  Similarity=0.632  Sum_probs=177.7

Q ss_pred             cccCcHHHHHHHHHHHHHHccCCchHHHHHHHHhhhccCCcccccchhhhhhhchhhhcccCChHHHHHHHHHHHHhhcC
Q 009433          165 KHVLSKELQLYFDKIRELTVSRSNSTVFKQALLSLAMDSGLHPLVPYFTYFISEEVVTRSLKNFSLLFALMRVARSLLRN  244 (535)
Q Consensus       165 kh~LSkElQ~Yf~kIt~all~~~~~~~r~~AL~sL~tD~gL~qLLPYfv~FI~e~vV~~nl~nl~~L~~Lmrmv~ALl~N  244 (535)
                      ||+||+|+|+||++||++|++    ..|++||++|++|||||||+|||++||+++ |++|++|+..|.++|+|++||++|
T Consensus         2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~-v~~nl~~l~~L~~lm~~~~ALl~N   76 (196)
T 4atg_A            2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISEL-ILKSFKEAEVLKTCIALYFSLIKN   76 (196)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHH-HHHCTTCHHHHHHHHHHHHHHHHC
T ss_pred             CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHcC
Confidence            799999999999999999997    468999999999999999999999999999 999999999999999999999999


Q ss_pred             CCcccccchhhhHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhh
Q 009433          245 PHIHIEPYLHQMMPSVITCLVSKRLGNRFSDNHWDLRNFVADLIASICTRFGHVYQNLQSRVTRTLLHAFLDPTKSLSQH  324 (535)
Q Consensus       245 p~L~IepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tL~k~lldp~k~l~t~  324 (535)
                      |+++||||+|||||++|||+|++++|+.      +|||+||++|+.||++||++|++|++||+++|.|+|+||++|+++|
T Consensus        77 ~~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~  150 (196)
T 4atg_A           77 KHVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQ  150 (196)
T ss_dssp             TTCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHH
Confidence            9999999999999999999999999875      9999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhChhhhHhhcccchHHHHHhhhhhh
Q 009433          325 YGAIQGLAALGPSVVHLLILPNLELYLKFLEPEM  358 (535)
Q Consensus       325 YGAI~GL~aLG~~aVr~lllP~L~~y~~~Le~~l  358 (535)
                      ||||+||++||++|||.+|+|+++.|++.++..-
T Consensus       151 YGAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~~  184 (196)
T 4atg_A          151 YGALYCLSILSKNVVNTVIREHAEEYKRTIGKKK  184 (196)
T ss_dssp             HHHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999887654

PyMOL of 4atg

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3	Back alignment and structure

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B	Back alignment and structure

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1	Back alignment and structure

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}	Back alignment and structure

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...	Back alignment and structure

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2	Back alignment and structure

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2	Back alignment and structure

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A	Back alignment and structure

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3	Back alignment and structure

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T	Back alignment and structure

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2	Back alignment and structure

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3	Back alignment and structure

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W	Back alignment and structure

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}	Back alignment and structure

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A	Back alignment and structure

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}	Back alignment and structure

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}	Back alignment and structure

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A	Back alignment and structure

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3	Back alignment and structure

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B	Back alignment and structure

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3	Back alignment and structure

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A	Back alignment and structure

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A	Back alignment and structure

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...	Back alignment and structure

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*	Back alignment and structure

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C	Back alignment and structure

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...	Back alignment and structure

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1	Back alignment and structure

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1	Back alignment and structure

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3	Back alignment and structure

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*	Back alignment and structure

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3	Back alignment and structure

>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J	Back alignment and structure

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}	Back alignment and structure

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		535
d1tafb_		70	a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila mel	2e-28
d2huec1		82	a.22.1.1 (C:20-101) Histone H4 {African clawed fro	9e-21
d1f1ea_		151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	4e-13
d1f1ea_		151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	5e-05
d1htaa_		68	a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth	6e-13

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 70	Back information, alignment and structure


class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  105 bits (264), Expect = 2e-28
 Identities = 29/66 (43%), Positives = 44/66 (66%)

Query: 2  SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDV 61
          S +  E+++VIA+SIGV +LS D A  LA DV  +++ I+Q+A K M HA R  L+  D+
Sbjct: 5  SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDI 64

Query: 62 DSALNL 67
          D +L +
Sbjct: 65 DMSLKV 70

PyMOL of d1tafb_

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 82	Back information, alignment and structure

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151	Back information, alignment and structure

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151	Back information, alignment and structure

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		535
d1tafb_		70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	99.93
d2huec1		82	Histone H4 {African clawed frog (Xenopus laevis) [	99.78
d1htaa_		68	Archaeal histone {Archaeon Methanothermus fervidus	99.46
d1f1ea_		151	Archaeal histone {Archaeon Methanopyrus kandleri [	98.96
d1ku5a_		66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	98.79
d1f1ea_		151	Archaeal histone {Archaeon Methanopyrus kandleri [	98.27
d1n1ja_		87	Nuclear transcription factor Y subunit beta (Nf-Yb	98.1
d1jfia_		66	Negative cofactor 2, NC2, alpha chain {Human (Homo	97.88
d1q9ca_		172	Histone domain of Son of sevenless protein {Human	97.87
d2bykb1		89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	97.75
d1n1jb_		78	Nuclear transcription factor Y subunit gamma (Nf-Y	97.67
d1tafa_		68	TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta	97.66
d1jfib_		135	Negative cofactor 2, NC2, beta chain {Human (Homo	97.58
d1tzyc_		95	Histone H3 {Chicken (Gallus gallus), erythrocytes	97.13
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.44
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.17
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	95.99
d1b3ua_		588	Constant regulatory domain of protein phosphatase	95.38
d1b3ua_		588	Constant regulatory domain of protein phosphatase	95.26
d1f66c_		103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	95.07
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.04
d1h3ob_		74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	94.5
d2byka1		72	Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax	94.49
d1bh9b_		89	TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}	94.13
d1u35c1		106	macro-H2A.1, histone domain {Human (Homo sapiens)	94.11
d1tzya_		106	Histone H2A {Chicken (Gallus gallus), erythrocytes	93.68
d1tzyb_		92	Histone H2B {Chicken (Gallus gallus), erythrocytes	93.62
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	93.48
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	93.39
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.18
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	93.03
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	93.0
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	92.52
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	88.59
d1h3oa_		50	TAF(II)-135, (TAF(II)-130, hTAF4), histone fold do	88.07
d1w5sa2		287	CDC6-like protein APE0152, N-terminal domain {Aero	83.81
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	81.16

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=2.4e-26  Score=183.61  Aligned_cols=66  Identities=44%  Similarity=0.637  Sum_probs=64.2

Q ss_pred             CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHhhHHHHhhc
Q 009433            2 SIVPKETIEVIAQSIGVYNLSSDVALALAPDVEYRVREIMQEAIKCMRHAHRTVLTANDVDSALNL   67 (535)
Q Consensus         2 s~~~~e~V~~iAes~Gi~~lsdeaa~~La~dveyrireIiqeA~KfmrhskR~~Lt~~DI~~AL~~   67 (535)
                      |.+|.|+||+||||+||.+|+||+++.||+||||||+||+|+|.||||||||++||++|||+|||+
T Consensus         5 S~~~~esik~iAeS~Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALkv   70 (70)
T d1tafb_           5 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV   70 (70)
T ss_dssp             CCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred             ccCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHcC
Confidence            789999999999999999999999999999999999999999999999999999999999999984

PyMOL of d1tafb_

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}	Back information, alignment and structure

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}	Back information, alignment and structure

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}	Back information, alignment and structure

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}	Back information, alignment and structure

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}	Back information, alignment and structure

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}	Back information, alignment and structure