Citrus Sinensis ID: 009463

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
MDATTSGTPAIQYHNIPDQPITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
cccccccccEEEEEcccccccEEEEccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEcccccccccccccccEEEcccccHHHHcccccEEEEccHHHHcccccccccccEEEEEEEEccccccccccEEEEccccEEEEEEccccEEEEcccccccccccccccEEEEEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccEEEccEEEcccccccEEEEEEcccEEEEEcccccEEEEEcccccccccccccccccEEccccccccccEEEEEcccccEEEEEEcccccEEEEEEccccccccccccccEEEEEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEccEEccccccccEEEEEEcccEEEEEEccccEEEEcccccccccccccccccccccccccccEEEEccccccccEEEEEEccccccccEEEEEEccccEEEEEcccccccccccccccccccccEEEEcccc
cccccccccEEEEcccccccccEEEccccccccccccccccccccccccHHcccHHHHHHHHcccccHHHHccccccHHHHccccccccccHHHHHHHEEEEEccccEEEEEEEccEEEEEcccccccccccccccccHHHHccccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHHcccEEEEEEEcccEEEEEEEcccccEEEEEcccccccccccccccccccEEEEEEEccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccccccccEHHHHHccccEEEEEEEccccccccEEEEEEcccEEEEEccccccccccccccccEEccccEEEEcccc
mdattsgtpaiqyhnipdqpitaiivapvptfqrnqrhcfgestpgefplaaspsIVLHVLTacnldpqdLAKLEATCSFfrqpanfapdyqlSISELAALDMCQKraifkpmtEAERQDLKQKCGGSWKLVLRFLLAGEACcrrensqaiagpghsiavTSKGvvysfgsnssgqlghgtteeewrprpirslQGIRIIQAAAGAGRTmlisdagqvyafgkdsfgeaeygvqgtklvtspqlVESLKNIFVVQAAIGNFFTAVLSregrvytfswgndarlghhtepndvephpllgtlenipvVQIAAGYCYLLALacqpsgmavysvgcglggklghgsrtdekhprLIEQFQLLNLQPVVVAAGAWHAAVvgqdgrvctwgwgrygclghgneecesVPKVVQALNDVKAIhvatgdyttfvvsedgdvysfgcgesaslghnaiadgqgnrhanvltPQLVTSLKQVNERVVQISLTNSIYWNAHTFaltesgklyafgagdkgqlGIELVNnqtergnpervdidls
mdattsgtpaiqyhnipdqpITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENsqaiagpghsiAVTSKGVVYSFGsnssgqlghgtteeewrprpIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELvnnqtergnpervdidls
MDATTSGTPAIQYHNIPDQPITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLqgiriiqaaagagrTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIaagycyllalacQPSGMAVYSVgcglggklghgSRTDEKHPRLIEQFQLLNLQPvvvaagawhaavvGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
**********IQYHNIPDQPITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFG*******************PIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGS****KHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELV*****************
************YHNIPDQPI******************************ASPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQD******GSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
********PAIQYHNIPDQPITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSN**************RPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
*******TPAIQYHNIPDQPITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNA****QG***ANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDID**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDATTSGTPAIQYHNIPDQPITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query534 2.2.26 [Sep-21-2011]
O95714 4834 E3 ubiquitin-protein liga yes no 0.629 0.069 0.289 1e-31
Q4U2R1 4836 E3 ubiquitin-protein liga yes no 0.629 0.069 0.289 1e-31
Q9FN03440 Ultraviolet-B receptor UV no no 0.636 0.772 0.302 3e-30
Q15751 4861 Probable E3 ubiquitin-pro no no 0.653 0.071 0.302 2e-29
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.529 0.267 0.332 6e-29
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.529 0.267 0.328 8e-29
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.529 0.267 0.328 2e-28
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.636 0.069 0.294 2e-28
Q15034 1050 Probable E3 ubiquitin-pro no no 0.582 0.296 0.317 4e-28
Q6P798 551 RCC1 and BTB domain-conta no no 0.604 0.586 0.286 1e-23
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function desciption
 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 175/359 (48%), Gaps = 23/359 (6%)

Query: 157  SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAG 216
            +++    G +Y +G N  GQLG     +   P P  +L  +R +Q   G      ++  G
Sbjct: 3945 TLSAGGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADG 4004

Query: 217  QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYT 274
            ++YA G  +      G+ GT+ V++P L+ES++++F+ + A+  G      LS EG VY+
Sbjct: 4005 KLYATGYGA--GGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYS 4062

Query: 275  FSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCG 334
            +    D +LGH        P  ++ +L  I VV +AAG  +    AC  +   +Y+ G G
Sbjct: 4063 WGEAEDGKLGHGNRSPCDRPR-VIESLRGIEVVDVAAGGAHS---ACVTAAGDLYTWGKG 4118

Query: 335  LGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLG 394
              G+LGH    D+  P+L+E  Q   +  +   +G      +  D  V +WG G YG LG
Sbjct: 4119 RYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLG 4178

Query: 395  HGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQ 454
             G  +   VP  + +L  +  + V  G   +  +++ G VY++G G+   LGH +     
Sbjct: 4179 RGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS----- 4233

Query: 455  GNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLG 513
                 +V  P+ V  L+   ++V+ I+ T S+    H    TE G++Y +G  D+GQLG
Sbjct: 4234 ---DDHVRRPRQVQGLQ--GKKVIAIA-TGSL----HCVCCTEDGEVYTWGDNDEGQLG 4282
E3 ubiquitin-protein ligase that regulates ubiquitin-dependent retention of repair proteins on damaged chromosomes. Recruited to sites of DNA damage in response to ionizing radiation (IR) and facilitates the assembly of UBE2N and RNF8 promoting DNA damage-induced formation of 'Lys-63'-linked ubiquitin chains. Acts as a mediator of binding specificity between UBE2N and RNF8. Involved in the maintenance of RNF168 levels. E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of XPA which influences the circadian oscillation of DNA excision repair activity.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
224135099538 predicted protein [Populus trichocarpa] 0.998 0.990 0.891 0.0
356567464535 PREDICTED: probable E3 ubiquitin-protein 0.998 0.996 0.891 0.0
225424560534 PREDICTED: probable E3 ubiquitin-protein 1.0 1.0 0.885 0.0
255547958537 RCC1 and BTB domain-containing protein, 0.996 0.990 0.903 0.0
147784312541 hypothetical protein VITISV_008041 [Viti 0.988 0.975 0.883 0.0
357463175535 RCC1 domain-containing protein [Medicago 0.998 0.996 0.872 0.0
356540207530 PREDICTED: probable E3 ubiquitin-protein 0.988 0.996 0.878 0.0
449435009534 PREDICTED: probable E3 ubiquitin-protein 0.998 0.998 0.839 0.0
297814848533 regulator of chromosome condensation fam 0.998 1.0 0.822 0.0
42572533532 regulator of chromosome condensation rep 0.996 1.0 0.814 0.0
>gi|224135099|ref|XP_002321983.1| predicted protein [Populus trichocarpa] gi|222868979|gb|EEF06110.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1009 bits (2609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/537 (89%), Positives = 507/537 (94%), Gaps = 4/537 (0%)

Query: 1   MDATTSGTPAIQYHNIPDQPITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHV 60
           MD+TTSGTP IQYHNI DQP+TAI+  PV T+QRNQRHCFG+S PGEFPLAA+PSIVLHV
Sbjct: 1   MDSTTSGTPTIQYHNITDQPVTAIVAVPVSTYQRNQRHCFGDSIPGEFPLAANPSIVLHV 60

Query: 61  LTACNLDPQDLAKLEA----TCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEA 116
           LT CNLDPQDLAKLEA    TCSFFRQPA+FAPDY+LS+SELAALDMCQKRAIFKPMT  
Sbjct: 61  LTTCNLDPQDLAKLEAKSIATCSFFRQPASFAPDYELSMSELAALDMCQKRAIFKPMTPE 120

Query: 117 ERQDLKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQ 176
           ERQDLKQ+CGGSWKLVLRFLLAGEACCRRE SQAIAGPGHSIAVTS GV YSFGSNSSGQ
Sbjct: 121 ERQDLKQRCGGSWKLVLRFLLAGEACCRRERSQAIAGPGHSIAVTSNGVAYSFGSNSSGQ 180

Query: 177 LGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGT 236
           LGHGTTEEEWRPR IRSLQGIRIIQAAAG GRTMLISDAG+VYAFGKDSFGEAEYGVQGT
Sbjct: 181 LGHGTTEEEWRPRQIRSLQGIRIIQAAAGPGRTMLISDAGEVYAFGKDSFGEAEYGVQGT 240

Query: 237 KLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHP 296
           K VT+PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGND +LGH TEPNDV PHP
Sbjct: 241 KTVTTPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDGKLGHQTEPNDVVPHP 300

Query: 297 LLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQF 356
           LLG LENIPVVQIAAGYCYLLALACQPSGM+VYSVGCGLGGKLGHGSRTDEK+PRLIEQF
Sbjct: 301 LLGALENIPVVQIAAGYCYLLALACQPSGMSVYSVGCGLGGKLGHGSRTDEKYPRLIEQF 360

Query: 357 QLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAI 416
           QLLNLQP+VVAAGAWHAAVVG+DGRVCTWGWGRYGCLGHGNEECESVPKVV AL+ VKA+
Sbjct: 361 QLLNLQPMVVAAGAWHAAVVGRDGRVCTWGWGRYGCLGHGNEECESVPKVVDALSKVKAV 420

Query: 417 HVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNER 476
           HVATGDYTTFVVS+DGDVYSFGCGESASLGHN   DGQGNRH NVL+P+LVTSLK+V ER
Sbjct: 421 HVATGDYTTFVVSDDGDVYSFGCGESASLGHNGDGDGQGNRHTNVLSPELVTSLKEVKER 480

Query: 477 VVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDL 533
           VVQISLTNS+YWNAHTFALTESGKL+AFGAGDKGQLG+ELVNNQTERGNPE+VD+DL
Sbjct: 481 VVQISLTNSVYWNAHTFALTESGKLFAFGAGDKGQLGMELVNNQTERGNPEQVDVDL 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356567464|ref|XP_003551939.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|225424560|ref|XP_002285332.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 isoform 1 [Vitis vinifera] gi|296081404|emb|CBI16837.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547958|ref|XP_002515036.1| RCC1 and BTB domain-containing protein, putative [Ricinus communis] gi|223546087|gb|EEF47590.1| RCC1 and BTB domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147784312|emb|CAN77314.1| hypothetical protein VITISV_008041 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357463175|ref|XP_003601869.1| RCC1 domain-containing protein [Medicago truncatula] gi|355490917|gb|AES72120.1| RCC1 domain-containing protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356540207|ref|XP_003538581.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|449435009|ref|XP_004135288.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] gi|449494867|ref|XP_004159669.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297814848|ref|XP_002875307.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297321145|gb|EFH51566.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|42572533|ref|NP_974362.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|9279617|dbj|BAB01075.1| unnamed protein product [Arabidopsis thaliana] gi|110740358|dbj|BAF02074.1| hypothetical protein [Arabidopsis thaliana] gi|332643596|gb|AEE77117.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query534
TAIR|locus:2092190532 AT3G26100 [Arabidopsis thalian 0.996 1.0 0.726 3.1e-209
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.822 0.899 0.303 1.8e-39
TAIR|locus:2146142396 AT5G16040 "AT5G16040" [Arabido 0.230 0.310 0.338 4.8e-24
TAIR|locus:2076889393 AT3G02510 "AT3G02510" [Arabido 0.230 0.312 0.345 1.6e-23
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.627 0.069 0.261 3e-21
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.627 0.092 0.261 6.7e-23
UNIPROTKB|F1M560 3643 Herc2 "Protein Herc2" [Rattus 0.627 0.091 0.261 6.8e-23
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.627 0.069 0.261 7.2e-23
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.627 0.069 0.261 7.2e-23
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.627 0.070 0.261 9.2e-23
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2023 (717.2 bits), Expect = 3.1e-209, P = 3.1e-209
 Identities = 388/534 (72%), Positives = 433/534 (81%)

Query:     1 MDATTSGTPAIQYHNIPDQPITAIIVAPVPTFQRNQRHCFGESTPGEFPLAASPSIVLHV 60
             MDAT SGTP++QY N+P+Q ++     PV  FQR +RHCFG++TPGEFPLAA+PSIVLHV
Sbjct:     1 MDAT-SGTPSLQYINLPEQSVSTTS-PPVSPFQRPKRHCFGDTTPGEFPLAANPSIVLHV 58

Query:    61 LTACNLDPQDLAKLEATCSFFRQPANFAPDYQLSISELAALDMCQKRAIFKPMTEAERQD 120
             LT C LDP+DLA LEATCSFF QPANFAPD  LS+SELAALDMC KR IFKPM E ERQ+
Sbjct:    59 LTECRLDPRDLANLEATCSFFSQPANFAPDINLSLSELAALDMCNKRVIFKPMNEEERQE 118

Query:   121 LKQKCGGSWKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHG 180
             +K++CGGSWKLVLRFLLAGEACCRRE SQA+AGPGHS+AVTSKG VY+FG N+SGQLGHG
Sbjct:   119 MKRRCGGSWKLVLRFLLAGEACCRREKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHG 178

Query:   181 TTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVT 240
              TE+E R +P+RSL              TMLISD G+VYA GK+SFGEAEYG QGTK VT
Sbjct:   179 HTEDEARIQPVRSLQGVRIIQAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVT 238

Query:   241 SPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT 300
             +PQLV SLKNIFVVQAAIGN+FTAVLSREG+VYTFSWGND RLGH TE  DVEP PLLG 
Sbjct:   239 TPQLVTSLKNIFVVQAAIGNYFTAVLSREGKVYTFSWGNDGRLGHQTEAADVEPRPLLGP 298

Query:   301 LENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXXXSRTDEKHPRLIEQFQLLN 360
             LEN+PVVQI            QP+GM+VYSV           SRTDEK+PR+IEQFQ+LN
Sbjct:   299 LENVPVVQIAAGYCYLLALACQPNGMSVYSVGCGLGGKLGHGSRTDEKYPRVIEQFQILN 358

Query:   361 LQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT 420
             LQP             GQDGRVCTWGWGRYGCLGHGNEECESVPKVV+ L+ VKA+HVAT
Sbjct:   359 LQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVEGLSHVKAVHVAT 418

Query:   421 GDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQI 480
             GDYTTFVVS+DGDVYSFGCGESASLGH+   D QGNRHANVL+P +VTSLKQVNER+VQI
Sbjct:   419 GDYTTFVVSDDGDVYSFGCGESASLGHHPSFDEQGNRHANVLSPTVVTSLKQVNERMVQI 478

Query:   481 SLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDIDLS 534
             SLTNSIYWNAHTFALTESGKL+AFGAGD+GQLG EL  NQ ER  PE+VDIDLS
Sbjct:   479 SLTNSIYWNAHTFALTESGKLFAFGAGDQGQLGTELGKNQKERCVPEKVDIDLS 532
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076889 AT3G02510 "AT3G02510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M560 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-30
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-24
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 5e-20
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-12
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-04
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 6e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 8e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  123 bits (309), Expect = 4e-30
 Identities = 98/398 (24%), Positives = 165/398 (41%), Gaps = 70/398 (17%)

Query: 156 HSIAVTSKGVVYSFGSNSSGQLGHGTTEE-EWRPR--PIRSLQGIRIIQAAAGAGRTMLI 212
           H+  +     VYS+GSN   +LG G  E    RP+  P   +    II+ A G   ++ +
Sbjct: 60  HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGL 119

Query: 213 SDAGQVYAFGKDSFGEAEYGVQGTK--------------LVTSPQLVE----SLKNIFVV 254
              G +Y++G +  G     +                  L ++P  V     +  ++ VV
Sbjct: 120 DHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179

Query: 255 QAAIGNFFTAVLSREGRVYTFSWG----NDARLGHHTEPND--VEPHPLLGTLENIPVVQ 308
           + A G   + +L+ +GRVY  SWG     +   G +       ++  PL    + I  VQ
Sbjct: 180 KLACGWEISVILTADGRVY--SWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAI--VQ 235

Query: 309 IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL--LNLQPVV- 365
           +AAG  +L+AL    +   VY  G    G+LG             E+ +L  L   P   
Sbjct: 236 LAAGADHLIALT---NEGKVYGWGSNQKGQLG---------RPTSERLKLVVLVGDPFAI 283

Query: 366 -----VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECE----SVPKVVQALNDVKAI 416
                VA G  H+  + +DG +  WG   +G LG G++       + P   Q L+ V   
Sbjct: 284 RNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTIC 343

Query: 417 HVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNER 476
            ++ G+  + ++ +DG +Y+FG G+   LG              V TP  ++       +
Sbjct: 344 SISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITID------VSTPTKLSVAI----K 393

Query: 477 VVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGI 514
           + Q++         H  A T+ G +Y++G G+ G LG 
Sbjct: 394 LEQVACGT-----HHNIARTDDGSVYSWGWGEHGNLGN 426

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 534
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.92
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.27
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.27
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.1
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.02
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.01
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.88
KOG3669 705 consensus Uncharacterized conserved protein, conta 94.4
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 93.94
KOG3669 705 consensus Uncharacterized conserved protein, conta 91.42
KOG0315311 consensus G-protein beta subunit-like protein (con 90.18
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 89.24
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 88.18
KOG0646 476 consensus WD40 repeat protein [General function pr 84.8
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 84.01
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 82.45
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 80.67
PLN02153341 epithiospecifier protein 80.58
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-51  Score=407.63  Aligned_cols=353  Identities=27%  Similarity=0.432  Sum_probs=290.3

Q ss_pred             CeEEEEEcCCcEEEEeCCCCCCcCCCCCcce-eeceeeccC--CCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCccc
Q 009463          155 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEE-WRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEY  231 (534)
Q Consensus       155 ~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~-~~P~~v~~~--~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~  231 (534)
                      .|...++.-..||+||+|..+|||.+..+.. ..|+..+..  ....|++++||+.|+++|++||+||+||.|..|+||.
T Consensus        59 ~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr  138 (476)
T COG5184          59 KHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGR  138 (476)
T ss_pred             cchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccc
Confidence            4445667888999999999999999987666 778888766  5678999999999999999999999999999999997


Q ss_pred             CCC--------------CeeeeecCeEecc----CCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCccc
Q 009463          232 GVQ--------------GTKLVTSPQLVES----LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVE  293 (534)
Q Consensus       232 g~~--------------~~~~~~~P~~v~~----l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~  293 (534)
                      -..              ......+|..|+.    ....++++++||++++++|+++|+||.||....+.++.+...+...
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k  218 (476)
T COG5184         139 DIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQK  218 (476)
T ss_pred             ccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccccc
Confidence            651              2234677888876    3345799999999999999999999999999998888884443332


Q ss_pred             ----ccccccccCCcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeC
Q 009463          294 ----PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG  369 (534)
Q Consensus       294 ----p~~v~~~~~~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G  369 (534)
                          +.++..  ....|+++++|..|.++|+.  +| ++|.||+|..||||.........+..+..+-... .|..|+||
T Consensus       219 ~~~~~~p~~v--~~~~i~qla~G~dh~i~lt~--~G-~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~-~i~~vacG  292 (476)
T COG5184         219 TSIQFTPLKV--PKKAIVQLAAGADHLIALTN--EG-KVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIR-NIKYVACG  292 (476)
T ss_pred             ceeeeeeeec--CchheeeeccCCceEEEEec--CC-cEEEecCCcccccCCchhhhcccccccCChhhhh-hhhhcccC
Confidence                333332  24569999999999999997  88 9999999999999998877766666665432222 36789999


Q ss_pred             CcEEEEEecCCcEEEEECCCCCccCCCC----CCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCC
Q 009463          370 AWHAAVVGQDGRVCTWGWGRYGCLGHGN----EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASL  445 (534)
Q Consensus       370 ~~hs~alt~~G~vy~wG~n~~GqLG~g~----~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqL  445 (534)
                      .+|++||+++|++|+||.|.+||||.+.    ......|.....+.++.|..+++|..|+++|..+|.||+||++..+||
T Consensus       293 ~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql  372 (476)
T COG5184         293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL  372 (476)
T ss_pred             cceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence            9999999999999999999999999982    112345566666677789999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCC
Q 009463          446 GHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGN  525 (534)
Q Consensus       446 G~~~~~~~~~~~~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~  525 (534)
                      |..+      .....+..|+++...    .++.+++|     |..|+++.+.+|+||.||+|++||||.|+.+  .....
T Consensus       373 g~~~------~~~~~~~~~~~ls~~----~~~~~v~~-----gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~--~~~~~  435 (476)
T COG5184         373 GIQE------EITIDVSTPTKLSVA----IKLEQVAC-----GTHHNIARTDDGSVYSWGWGEHGNLGNGPKE--ADVLV  435 (476)
T ss_pred             cCcc------cceeecCCccccccc----cceEEEEe-----cCccceeeccCCceEEecCchhhhccCCchh--hhccc
Confidence            9986      124556667666643    56899999     9999999999999999999999999999654  56666


Q ss_pred             ceEee
Q 009463          526 PERVD  530 (534)
Q Consensus       526 P~~v~  530 (534)
                      |+.+.
T Consensus       436 pt~i~  440 (476)
T COG5184         436 PTLIR  440 (476)
T ss_pred             ccccc
Confidence            66665

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 4e-21
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 4e-19
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 5e-19
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 8e-19
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 9e-19
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-08
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 5e-08
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 6e-06
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 3e-05
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 3e-04
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 150/357 (42%), Gaps = 23/357 (6%)
Query: 164 GVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLXXXXXXXXXXXXXXTMLISDAGQVYAFGK 223
           G +Y +G N  GQLG     +   P P  +L                 ++  G++YA G 
Sbjct: 20  GTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGY 79
Query: 224 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDA 281
            + G     + GT+ V++P L+ES++++F+ + A+  G      LS EG VY++    D 
Sbjct: 80  GAGGRLG--IGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDG 137
Query: 282 RLGHHTEPNDVEPHPLLGTLENIPVVQIXXXXXXXXXXXXQPSGMAVYSVXXXXXXXXXX 341
           +LGH        P  ++ +L  I VV +                  +Y+           
Sbjct: 138 KLGHGNRSPCDRPR-VIESLRGIEVVDVAAGGAHSACVTAAGD---LYTWGKGRYGRLGH 193
Query: 342 XSRTDEKHPRLIEQFQLLNLQPXXXXXXXXXXXXXGQDGRVCTWGWGRYGCLGHGNEECE 401
               D+  P+L+E  Q   +                 D  V +WG G YG LG G  +  
Sbjct: 194 SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGC 253
Query: 402 SVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANV 461
            VP  + +L  +  + V  G   +  +++ G VY++G G+   LGH +          +V
Sbjct: 254 KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHV 305
Query: 462 LTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVN 518
             P+ V  L+   ++V+ I+ T S+    H    TE G++Y +G  D+GQLG    N
Sbjct: 306 RRPRQVQGLQ--GKKVIAIA-TGSL----HCVCCTEDGEVYTWGDNDEGQLGDGTTN 355
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query534
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-113
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-86
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 8e-73
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-113
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-84
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-75
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-15
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-84
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-77
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-63
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-60
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-83
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-66
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-50
3of7_A473 Regulator of chromosome condensation; beta-propell 9e-45
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 5e-79
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-77
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-64
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-49
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 3e-41
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 6e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-28
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-21
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  341 bits (876), Expect = e-113
 Identities = 103/384 (26%), Positives = 173/384 (45%), Gaps = 26/384 (6%)

Query: 149 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGR 208
              +    ++     G +Y +G N  GQLG     +   P P  +L  +R +Q   G   
Sbjct: 5   HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQT 64

Query: 209 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVL 266
              ++  G++YA G  + G    G+ GT+ V++P L+ES++++F+ + A+  G      L
Sbjct: 65  LFAVTADGKLYATGYGAGGR--LGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122

Query: 267 SREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGM 326
           S EG VY++    D +LGH        P  +   L  I VV +AAG  +   +    +  
Sbjct: 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVT---AAG 178

Query: 327 AVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWG 386
            +Y+ G G  G+LGH    D+  P+L+E  Q   +  +   +G      +  D  V +WG
Sbjct: 179 DLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG 238

Query: 387 WGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLG 446
            G YG LG G  +   VP  + +L  +  + V  G   +  +++ G VY++G G+   LG
Sbjct: 239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLG 298

Query: 447 HNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 506
           H +          +V  P+ V  L+   ++V+ I+  +      H    TE G++Y +G 
Sbjct: 299 HGS--------DDHVRRPRQVQGLQ--GKKVIAIATGSL-----HCVCCTEDGEVYTWGD 343

Query: 507 GDKGQLGIELVNNQTERGNPERVD 530
            D+GQLG            P  V 
Sbjct: 344 NDEGQLGD---GTTNAIQRPRLVA 364
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.4
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 96.27
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.19
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 96.1
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.42
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.4
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 94.87
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 94.29
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.16
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 93.03
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 92.61
4g56_B357 MGC81050 protein; protein arginine methyltransfera 92.05
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 91.93
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 91.81
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 91.68
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 91.54
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 91.02
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 90.75
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 90.69
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 90.54
2xyi_A430 Probable histone-binding protein CAF1; transcripti 89.23
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 86.32
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 85.8
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 84.86
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 83.6
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 83.38
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 82.97
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 82.7
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 81.61
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1.3e-72  Score=589.48  Aligned_cols=361  Identities=30%  Similarity=0.502  Sum_probs=333.8

Q ss_pred             cccceEEEcCCCeEEEEEcCCcEEEEeCCCCCCcCCCCCcceeeceeeccCCCCcEEEEEeCCCeEEEEecCC-cEEEEe
Q 009463          144 RRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAG-QVYAFG  222 (534)
Q Consensus       144 ~~~i~~is~G~~h~~~l~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G-~vy~wG  222 (534)
                      .++|++|+||..|+++|+++|+||+||.|.+||||.++..+...|++++.+.+.+|++|+||..|+++|+++| +||+||
T Consensus        15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG   94 (406)
T 4d9s_A           15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWG   94 (406)
T ss_dssp             CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEE
T ss_pred             ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEc
Confidence            4578999999999999999999999999999999999999999999999998889999999999999999986 999999


Q ss_pred             cCCCCCcccCCCCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccC
Q 009463          223 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE  302 (534)
Q Consensus       223 ~n~~GqlG~g~~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~  302 (534)
                      .|.+||||.+.  ......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.. +.
T Consensus        95 ~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~  171 (406)
T 4d9s_A           95 WGDFGRLGHGN--SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FE  171 (406)
T ss_dssp             CCGGGTTCSSS--CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-GT
T ss_pred             CCCCcCCCCCC--CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-cC
Confidence            99999999986  3556778889888888999999999999999999999999999999999999988888988876 77


Q ss_pred             CcCEEEEEecceeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCCcCceeeeecccCCCCcEEEEeCCcEEEEEecCCcE
Q 009463          303 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRV  382 (534)
Q Consensus       303 ~~~i~~Ia~G~~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~Ia~G~~hs~alt~~G~v  382 (534)
                      +.+|++|+||.+|+++|++  +| +||+||.|.+||||.+.......|.++..+  ...+|++|+||.+|+++|+++|+|
T Consensus       172 ~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~i~~va~G~~ht~~l~~~G~v  246 (406)
T 4d9s_A          172 GIRIKMVAAGAEHTAAVTE--DG-DLYGWGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGAL  246 (406)
T ss_dssp             TCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSSSSCCEEEEEECCCS--TTCCEEEEEECSSEEEEEETTCCE
T ss_pred             CCcEEEEecCCCeEEEEeC--CC-CEEEeeCCCCCCCCCCCCCCcCccEEeccc--CCceEEEEEECCCcEEEEcCCCCE
Confidence            7889999999999999997  89 999999999999999998888889888764  346799999999999999999999


Q ss_pred             EEEECCCCCccCCCCCCCccccEEecccCCCcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCCccccc
Q 009463          383 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVL  462 (534)
Q Consensus       383 y~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~~~~~  462 (534)
                      |+||.|.+||||.++......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+.        .....
T Consensus       247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~  318 (406)
T 4d9s_A          247 YTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--------NLDQC  318 (406)
T ss_dssp             EEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------SSCEE
T ss_pred             EEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC--------CCCCc
Confidence            9999999999999999899999999999999999999999999999999999999999999999987        45567


Q ss_pred             cCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCCceEee
Q 009463          463 TPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD  530 (534)
Q Consensus       463 ~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P~~v~  530 (534)
                      .|.++..+  ...+|++|+|     |.+|++||+++|+||+||.|++||||+|..   .+...|++|+
T Consensus       319 ~p~~v~~~--~~~~v~~va~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~---~~~~~P~~v~  376 (406)
T 4d9s_A          319 SPVQVRFP--DDQKVVQVSC-----GWRHTLAVTERNNVFAWGRGTNGQLGIGES---VDRNFPKIIE  376 (406)
T ss_dssp             EEEEECCG--GGCCEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSC---CCEEEEEECG
T ss_pred             cCEEEecc--CCCcEEEEEe-----CCCeEEEEeCCCCEEEecCCCCCccCCCCC---CCCcCCEEee
Confidence            88888766  4578999999     999999999999999999999999999954   4566677765
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 534
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-34
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-30
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-14
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-10
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-09
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 8e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-04
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (328), Expect = 5e-34
 Identities = 85/394 (21%), Positives = 143/394 (36%), Gaps = 41/394 (10%)

Query: 156 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDA 215
           H    T  G+V + G    GQLG G    E R +P        ++QA AG   T+ +S +
Sbjct: 7   HRSHSTEPGLVLTLGQGDVGQLGLGENVME-RKKPALVSIPEDVVQAEAGGMHTVCLSKS 65

Query: 216 GQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTF 275
           GQVY+FG +  G    G   +   +     +      VVQ + G+  TA L+ +GRV+ +
Sbjct: 66  GQVYSFGCNDEG--ALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123

Query: 276 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGL 335
               D            +    +    ++PVV++A+G  +L+ L        +    CG 
Sbjct: 124 GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLG---CGE 180

Query: 336 GGKLGHGSRTDEKHPRLIEQFQLLNLQP--------------VVVAAGAWHAAVVGQDGR 381
            G+LG                +LL  +                    GA+    +  +G 
Sbjct: 181 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240

Query: 382 VCTWGWGRYGCLGHGNEECESVPKV--VQALNDVKAIHVATGDYTTFVVSEDGDVYSFGC 439
           V  +G   Y  LG    E   +P+       +    +  + G + T  +  +G  YS G 
Sbjct: 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300

Query: 440 GESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESG 499
                        G G        P L++ L      V  ++   S       +A+T+ G
Sbjct: 301 -------AEYGRLGLGEGAEEKSIPTLISRLP----AVSSVACGAS-----VGYAVTKDG 344

Query: 500 KLYAFGAGDKGQLGIELVNNQTERGNPERVDIDL 533
           +++A+G G   QLG        +  +P  +    
Sbjct: 345 RVFAWGMGTNYQLGT---GQDEDAWSPVEMMGKQ 375
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query534
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.22
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.77
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 95.14
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 93.55
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 87.17
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 86.97
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 86.57
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 84.57
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-58  Score=476.05  Aligned_cols=352  Identities=25%  Similarity=0.361  Sum_probs=287.6

Q ss_pred             CeEEEEEcCCcEEEEeCCCCCCcCCCCCc-ceeeceeeccCCCCcEEEEEeCCCeEEEEecCCcEEEEecCCCCCcccCC
Q 009463          155 GHSIAVTSKGVVYSFGSNSSGQLGHGTTE-EEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGV  233 (534)
Q Consensus       155 ~h~~~l~~~G~vy~wG~n~~GqLG~g~~~-~~~~P~~v~~~~~~~I~~Is~G~~h~~~Lt~~G~vy~wG~n~~GqlG~g~  233 (534)
                      .|+++++++|+||+||.|.+||||+++.. ....|.+|+.+.  +|++|+||..|++||+++|+||+||.|.+||||.+.
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~   83 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT   83 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCC
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccc
Confidence            69999999999999999999999999764 578899998765  699999999999999999999999999999999986


Q ss_pred             CCeeeeecCeEeccCCCceEEEEEecCceEEEEEcCCcEEEEeeCCCCCCCCCCCCCcccccccccccCCcCEEEEEecc
Q 009463          234 QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY  313 (534)
Q Consensus       234 ~~~~~~~~P~~v~~l~~~~I~~Va~G~~hs~~Lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~Ia~G~  313 (534)
                      ........|..+  ....+|++|+||..|+++++++|+||+||.+...+.+.........+........+.+|++|+||.
T Consensus        84 ~~~~~~~~~~~~--~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~  161 (401)
T d1a12a_          84 SVEGSEMVPGKV--ELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGN  161 (401)
T ss_dssp             CSTTGGGSCEEC--CCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECS
T ss_pred             cccccccccccc--ccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecc
Confidence            433333444444  456679999999999999999999999998876665543332222222222224556799999999


Q ss_pred             eeEEEeeeeCCCCeEEEeeeCCCccccCCCCCCC-----------cCceeeeec---ccCCCCcEEEEeCCcEEEEEecC
Q 009463          314 CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDE-----------KHPRLIEQF---QLLNLQPVVVAAGAWHAAVVGQD  379 (534)
Q Consensus       314 ~~~~~lt~~~~G~~vy~wG~n~~gqLG~g~~~~~-----------~~p~~i~~~---~~~~~~i~~Ia~G~~hs~alt~~  379 (534)
                      .|+++++.  +| ++|+||.|.+||||.......           ..|..+...   .....+|++|+||..|+++|+++
T Consensus       162 ~~~~~~~~--~g-~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~  238 (401)
T d1a12a_         162 DHLVMLTA--DG-DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHE  238 (401)
T ss_dssp             SEEEEEET--TS-CEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETT
T ss_pred             cceeeeec--CC-cccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecC
Confidence            99999997  88 999999999999998754321           123332211   11234789999999999999999


Q ss_pred             CcEEEEECCCCCccCCCCCCCccccEEecccCC--CcEEEEEecCceEEEEEeCCCEEEEeCCCCCCCCCCCCCCCCCCC
Q 009463          380 GRVCTWGWGRYGCLGHGNEECESVPKVVQALND--VKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNR  457 (534)
Q Consensus       380 G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~--~~i~~Va~G~~~t~alt~~G~vy~wG~n~~gqLG~~~~~~~~~~~  457 (534)
                      |+||.||.|.+|++|.........|..+..+..  ..++.+++|..|+++++++|+||+||.|.+||||.++       .
T Consensus       239 g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~-------~  311 (401)
T d1a12a_         239 GHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGE-------G  311 (401)
T ss_dssp             CCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCT-------T
T ss_pred             CeEeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCc-------c
Confidence            999999999999999998887777877776543  4699999999999999999999999999999999986       2


Q ss_pred             ccccccCeEeeecccccceEEEEEeeeccccccEEEEEEcCCCEEEEeCCCCCCCCCcCCCCCccCCCceEeecC
Q 009463          458 HANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVDID  532 (534)
Q Consensus       458 ~~~~~~P~~v~~l~~~~~~v~~I~~~~~~~G~~ht~alt~~G~vy~wG~n~~GqLG~g~~~~~~~~~~P~~v~~~  532 (534)
                      ......|+.++.+    .+|++|+|     |.+|++||+++|+||+||+|.+||||+|++   .+...|++|..+
T Consensus       312 ~~~~~~P~~i~~~----~~i~~Is~-----G~~hs~alt~dG~v~~WG~n~~GQLG~G~~---~~~~~P~~v~~~  374 (401)
T d1a12a_         312 AEEKSIPTLISRL----PAVSSVAC-----GASVGYAVTKDGRVFAWGMGTNYQLGTGQD---EDAWSPVEMMGK  374 (401)
T ss_dssp             CCCEEEEEECCSS----SSEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSC---SCEEEEEECCST
T ss_pred             cccccCCEEcCCC----CCeEEEEe-----eCCEEEEEeCCCeEEEEecCCCCCCCCCCC---CCEecCEEeecc
Confidence            3445678887755    56999999     999999999999999999999999999954   556678887643
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure