Citrus Sinensis ID: 009470
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LN22 | 537 | Pentatricopeptide repeat- | yes | no | 0.994 | 0.988 | 0.703 | 0.0 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.735 | 0.760 | 0.323 | 1e-61 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.760 | 0.796 | 0.318 | 2e-59 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.807 | 0.675 | 0.272 | 3e-57 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.734 | 0.615 | 0.275 | 2e-54 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.846 | 0.864 | 0.298 | 3e-54 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.741 | 0.662 | 0.273 | 1e-53 | |
| Q9S7R4 | 482 | Pentatricopeptide repeat- | no | no | 0.672 | 0.744 | 0.294 | 3e-52 | |
| Q0WP85 | 509 | Pentatricopeptide repeat- | no | no | 0.771 | 0.809 | 0.293 | 3e-52 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.705 | 0.508 | 0.287 | 3e-49 |
| >sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/540 (70%), Positives = 447/540 (82%), Gaps = 9/540 (1%)
Query: 1 MALIKSNHRLPFSLS---QQIPKAYSFFSS--LAPLNEDDDGDCVTNPNSSPDTPFLSPE 55
MAL++S L +LS +PK +S ++ L+ D+ +T S P +P L+PE
Sbjct: 1 MALLRSKLHLSRTLSFISPLLPKTFSTSATSLLSDHENDESAATITAAVSVPISPLLTPE 60
Query: 56 ETLISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHV 115
+T EKFHS+IKDH+RKNP +S ++ LNP T+ +LSL FSQI T+ +SPS VR V
Sbjct: 61 DTQTVEKFHSIIKDHYRKNP--TSPNDAILNPSLTLHALSLDFSQIETSQ-VSPSVVRCV 117
Query: 116 IEKSCGVRHGIPLLQVLSFFNWVTARPEFVH-SPDLYHEMINLAGKVRQFDLAWHFIDLM 174
IEK VRHGIPL Q L+FFNW T+R ++ H SP Y+EMI+L+GKVRQFDLAWH IDLM
Sbjct: 118 IEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLM 177
Query: 175 KSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234
KSRNVEI+++TF+IL+RRYVRAGLA+EAVH FNRME+YGC PDKIAFSIVIS L RKRRA
Sbjct: 178 KSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRA 237
Query: 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVI 294
SEAQSFFDSLKD+FEPDVIVYTNLVRGWCRAG ISEAE+VF+EMK+AGI+PNVYTYSIVI
Sbjct: 238 SEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVI 297
Query: 295 DALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE 354
DALCRCGQI+RAHDVFA+ML+ GC PN+ITFNNLMRVHVKA RTEKVLQVYNQMK+LGCE
Sbjct: 298 DALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCE 357
Query: 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRM 414
DTITYNFLI+ HC+D LE+A+KVLN+M++K C NASTFN IFR I K DVNGAHRM
Sbjct: 358 PDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRM 417
Query: 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG 474
Y KM + KCEPNTVTYNILM+MF SKSTDMVLK+KKEM++ EVEPNVNTYR+L+TM+CG
Sbjct: 418 YSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCG 477
Query: 475 MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
MGHWNNAYK +EM+EEKCL P S+YEMVL QLRRAGQL+KHEELVEKM+ +G ARPL
Sbjct: 478 MGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVARPL 537
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/396 (32%), Positives = 220/396 (55%), Gaps = 3/396 (0%)
Query: 129 LQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSI 188
L FF W + + HS YH MI K+RQ+ L W I+ M+ + + + V+TF I
Sbjct: 115 LLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKM-LNVETFCI 173
Query: 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKF 248
++R+Y RA EA++AFN ME+Y P+ +AF+ ++S LC+ + +AQ F++++D+F
Sbjct: 174 VMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRF 233
Query: 249 EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHD 308
PD Y+ L+ GW + N+ +A VFREM AG P++ TYSI++D LC+ G++ A
Sbjct: 234 TPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALG 293
Query: 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC 368
+ M C+P + ++ L+ + +R E+ + + +M+R G +AD +N LI C
Sbjct: 294 IVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFC 353
Query: 369 KDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428
K ++++ +VL M KG PN+ + N+I R + + G+ + A ++ KM + CEP+
Sbjct: 354 KANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKV-CEPDAD 412
Query: 429 TYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488
TY ++++MF K + K+ K M + V P+++T+ +LI C A + EM
Sbjct: 413 TYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEM 472
Query: 489 IEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524
IE ++P + + Q L + + + L EKM
Sbjct: 473 IEMG-IRPSGVTFGRLRQLLIKEEREDVLKFLNEKM 507
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 221/421 (52%), Gaps = 15/421 (3%)
Query: 107 ISPSTVRHVIEK--SCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQF 164
+SP+ + V++K + GV LS F W + F H+ Y+ +I GK++QF
Sbjct: 92 LSPALIEEVLKKLSNAGV-------LALSVFKWAENQKGFKHTTSNYNALIESLGKIKQF 144
Query: 165 DLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224
L W +D MK++ + ++ +TF+++ RRY RA EA+ AF++MEE+G + F+ +
Sbjct: 145 KLIWSLVDDMKAKKL-LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRM 203
Query: 225 ISILCRKRRASEAQSFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI 283
+ L + R +AQ FD +K K FEPD+ YT L+ GW + N+ + V REMK G
Sbjct: 204 LDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGF 263
Query: 284 QPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQ 343
+P+V Y I+I+A C+ + A F EM + C+P+ F +L+ + L+
Sbjct: 264 EPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALE 323
Query: 344 VYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403
+ + K G + TYN L+ +C ++EDA K ++ M KG PNA T+++I +
Sbjct: 324 FFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLI 383
Query: 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVN 463
++ A+ +Y M CEP TY I+++MF + DM +K+ EM+ V P ++
Sbjct: 384 RMQRSKEAYEVYQTM---SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMH 440
Query: 464 TYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEK 523
+ LIT C + A +Y EM++ PG ++ + Q L G+ K +LV K
Sbjct: 441 MFSSLITALCHENKLDEACEYFNEMLDVGIRPPG-HMFSRLKQTLLDEGRKDKVTDLVVK 499
Query: 524 M 524
M
Sbjct: 500 M 500
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/458 (27%), Positives = 227/458 (49%), Gaps = 27/458 (5%)
Query: 61 EKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHVIEKSC 120
EK + ++++HH + +P L L ++ + + P + V+ + C
Sbjct: 68 EKIYRILRNHHSR-----------------VPKLELALNE--SGIDLRPGLIIRVLSR-C 107
Query: 121 GVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE 180
G + FF W T +P + HS ++ M+ + K+RQF W I+ M+ N E
Sbjct: 108 GDAGNLGY----RFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPE 163
Query: 181 -ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQS 239
I + F +L+RR+ A + +AV + M +YG PD+ F ++ LC+ EA
Sbjct: 164 LIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASK 223
Query: 240 FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299
F+ +++KF P++ +T+L+ GWCR G + EA+ V +MK AG++P++ ++ ++
Sbjct: 224 VFEDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAH 283
Query: 300 CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA-SRTEKVLQVYNQMKRLGCEADTI 358
G++ A+D+ +M + G EPN + L++ + R ++ ++V+ +M+R GCEAD +
Sbjct: 284 AGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIV 343
Query: 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKM 418
TY LI CK G ++ VL+ M +KG P+ T+ I K + KM
Sbjct: 344 TYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKM 403
Query: 419 KDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHW 478
K C P+ + YN+++++ ++L EME N + P V+T+ I+I + G
Sbjct: 404 KRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFL 463
Query: 479 NNAYKYIREMIEEKCLK-PGSSVYEMVLQQLRRAGQLQ 515
A + +EM+ P + +L L R +L+
Sbjct: 464 IEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLE 501
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 205/400 (51%), Gaps = 8/400 (2%)
Query: 91 IPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDL 150
+P L L ++ + + P + V+ + CG + FF W +P + HS ++
Sbjct: 97 VPKLELALNE--SGVELRPGLIERVLNR-CGDAGNLGY----RFFVWAAKQPRYCHSIEV 149
Query: 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRM 209
Y M+ + K+RQF W I+ M+ N + I + F +LV+R+ A + +A+ + M
Sbjct: 150 YKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEM 209
Query: 210 EEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269
++G PD+ F ++ LC+ +A F+ ++ +F ++ +T+L+ GWCR G +
Sbjct: 210 PKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMM 269
Query: 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329
EA+ V +M AG +P++ Y+ ++ G++ A+D+ +M G EPN+ + L+
Sbjct: 270 EAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLI 329
Query: 330 RVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN 389
+ K R E+ ++V+ +M+R CEAD +TY L+ CK GK++ VL+ M++KG
Sbjct: 330 QALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLM 389
Query: 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKL 449
P+ T+ I K + KM+ ++ P+ YN+++++ ++L
Sbjct: 390 PSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRL 449
Query: 450 KKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMI 489
EMEEN + P V+T+ I+I G A + +EM+
Sbjct: 450 WNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMV 489
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 139/466 (29%), Positives = 229/466 (49%), Gaps = 14/466 (3%)
Query: 63 FHSLIKDHHRKNPNPS-SNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHVIEKSCG 121
F +L+ D P+P N + D P L + ++ + +S + V V+++
Sbjct: 25 FSTLLHD----PPSPDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKN 80
Query: 122 VRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN-VE 180
+ G P + FF W P+F HS + YH ++ + G +QF L W F+ + N E
Sbjct: 81 L--GFPAHR---FFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFE 135
Query: 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSF 240
I+ F I+ R Y RA L +EA AFNRM E+G P ++ LC K+ + AQ F
Sbjct: 136 ISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEF 195
Query: 241 FDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299
F K P Y+ LVRGW R + S A +VF EM ++ Y+ ++DALC+
Sbjct: 196 FGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCK 255
Query: 300 CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTIT 359
G + + +F EM +G +P++ +F + + A +V ++MKR + T
Sbjct: 256 SGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYT 315
Query: 360 YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419
+N +I CK+ K++DA +L+ M++KG NP+ T+N I +VN A ++ +M
Sbjct: 316 FNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMD 375
Query: 420 DLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILI-TMYCGMGHW 478
KC P+ TYN+++++ D ++ + M E + P V TY ++I + G
Sbjct: 376 RTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKL 435
Query: 479 NNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524
A +Y MI+E + P S+ EM+ +L GQ+ + L KM
Sbjct: 436 EEACRYFEMMIDEG-IPPYSTTVEMLRNRLVGWGQMDVVDVLAGKM 480
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 213/402 (52%), Gaps = 6/402 (1%)
Query: 132 LSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVR 191
LS + ++ P+ V + + + +GK++Q A +D M R+ V T++IL+
Sbjct: 192 LSVLDRMSVSPDVVTYNTILRSLCD-SGKLKQ---AMEVLDRMLQRDCYPDVITYTILIE 247
Query: 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSL-KDKFEP 250
R A+ + M + GC PD + ++++++ +C++ R EA F + + +P
Sbjct: 248 ATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQP 307
Query: 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVF 310
+VI + ++R C G +AE++ +M G P+V T++I+I+ LCR G + RA D+
Sbjct: 308 NVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDIL 367
Query: 311 AEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD 370
+M + GC+PNS+++N L+ K + ++ ++ +M GC D +TYN ++ CKD
Sbjct: 368 EKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427
Query: 371 GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTY 430
GK+EDA+++LN + KGC+P T+N + ++K G A ++ +M+ +P+T+TY
Sbjct: 428 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 487
Query: 431 NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490
+ L+ + D +K E E + PN T+ ++ C + A ++ MI
Sbjct: 488 SSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMIN 547
Query: 491 EKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTAR 532
C KP + Y ++++ L G ++ EL+ ++ ++G +
Sbjct: 548 RGC-KPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/363 (29%), Positives = 188/363 (51%), Gaps = 4/363 (1%)
Query: 108 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLA 167
+P+ V V+++ HG LQ F + E+VH + I++A ++
Sbjct: 55 TPNLVNSVLKRLWN--HGPKALQFFHFLD--NHHREYVHDASSFDLAIDIAARLHLHPTV 110
Query: 168 WHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI 227
W I M+S + + TF+I+ RY AG +AV F M E+GC D +F+ ++ +
Sbjct: 111 WSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDV 170
Query: 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV 287
LC+ +R +A F +L+ +F D + Y ++ GWC +A V +EM GI PN+
Sbjct: 171 LCKSKRVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNL 230
Query: 288 YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQ 347
TY+ ++ R GQI A + F EM + CE + +T+ ++ A ++ V+++
Sbjct: 231 TTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDE 290
Query: 348 MKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGD 407
M R G TYN +I CK +E+A+ + MVR+G PN +T+N++ R + G+
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350
Query: 408 VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRI 467
+ + +M++ CEPN TYN++++ ++ + L L ++M + PN++TY I
Sbjct: 351 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNI 410
Query: 468 LIT 470
LI+
Sbjct: 411 LIS 413
|
Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 206 bits (525), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 228/440 (51%), Gaps = 28/440 (6%)
Query: 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFD 165
S++P+ + + + +RH + LSFF ++ + P +P ++ +I++ G+VRQFD
Sbjct: 68 SLTPNLIHQTLLR---LRHNSKI--ALSFFQYLRSLPSPSTTPTSFNLIIDILGRVRQFD 122
Query: 166 LAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK-----IA 220
+ I M + + +TF ILV+R + AGL +AV AF+ + C + +
Sbjct: 123 VVRQLIVEMD----QTSPETFLILVKRLIAAGLTRQAVRAFD---DAPCFLENRRFRLVE 175
Query: 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280
F ++ LC+ A F+ K++F D VYT L+ GWC+ I AE+ EM
Sbjct: 176 FGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLVEMIE 235
Query: 281 AGIQPNVYTYSIVIDALCRCGQ----------ITRAHDVFAEMLEVGCEPNSITFNNLMR 330
+GI+PNV TY+++++ +CR + A VF EM + G EP+ +F+ ++
Sbjct: 236 SGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLH 295
Query: 331 VHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390
++ +A + E L MK G TY ++ C C G+LE+A ++L +MV G +P
Sbjct: 296 MYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISP 355
Query: 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLK 450
+++T+N F+ D NGA +Y KMK+ C+P+T TYN+L+ F + V ++
Sbjct: 356 SSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETVKEIW 415
Query: 451 KEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR 510
+++ +E P++++Y L+ C W A Y EMIE L P +E + + L +
Sbjct: 416 DDLKASETGPDLDSYTSLVHGLCSKEKWKEACGYFVEMIERGFL-PQKLTFETLYKGLIQ 474
Query: 511 AGQLQKHEELVEKMVDRGFT 530
+ +++ L +K+ + T
Sbjct: 475 SNKMRTWRRLKKKLDEESIT 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (499), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 109/379 (28%), Positives = 194/379 (51%), Gaps = 2/379 (0%)
Query: 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRME 210
Y+ +I+ ++ + A H + LM+ + V ++S +V Y R G + M+
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMK 308
Query: 211 EYGCAPDKIAFSIVISILCRKRRASEAQ-SFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269
G P+ + +I +LCR + +EA+ +F + ++ PD +VYT L+ G+C+ G+I
Sbjct: 309 RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIR 368
Query: 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329
A + F EM I P+V TY+ +I C+ G + A +F EM G EP+S+TF L+
Sbjct: 369 AASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428
Query: 330 RVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN 389
+ KA + +V+N M + GC + +TY LID CK+G L+ A ++L+ M + G
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQ 488
Query: 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKL 449
PN T+N I + K G++ A ++ G+ + +TVTY LM + S D ++
Sbjct: 489 PNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEI 548
Query: 450 KKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLR 509
KEM ++P + T+ +L+ +C G + K + M+ K + P ++ + +++Q
Sbjct: 549 LKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML-AKGIAPNATTFNSLVKQYC 607
Query: 510 RAGQLQKHEELVEKMVDRG 528
L+ + + M RG
Sbjct: 608 IRNNLKAATAIYKDMCSRG 626
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | ||||||
| 18394846 | 537 | pentatricopeptide repeat-containing prot | 0.994 | 0.988 | 0.703 | 0.0 | |
| 255565671 | 528 | pentatricopeptide repeat-containing prot | 0.985 | 0.996 | 0.716 | 0.0 | |
| 225459754 | 531 | PREDICTED: pentatricopeptide repeat-cont | 0.986 | 0.992 | 0.721 | 0.0 | |
| 224085950 | 480 | predicted protein [Populus trichocarpa] | 0.897 | 0.997 | 0.75 | 0.0 | |
| 297844992 | 537 | pentatricopeptide repeat-containing prot | 0.990 | 0.985 | 0.702 | 0.0 | |
| 147767652 | 1563 | hypothetical protein VITISV_033177 [Viti | 0.988 | 0.337 | 0.718 | 0.0 | |
| 357467093 | 530 | Pentatricopeptide repeat-containing prot | 0.986 | 0.994 | 0.696 | 0.0 | |
| 449437410 | 534 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.994 | 0.690 | 0.0 | |
| 356517665 | 564 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.932 | 0.683 | 0.0 | |
| 302141714 | 496 | unnamed protein product [Vitis vinifera] | 0.921 | 0.991 | 0.669 | 0.0 |
| >gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20300, mitochondrial; Flags: Precursor gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201 from Arabidopsis thaliana BAC T3P18 gb|AC005698 and contains multiple PPR PF|01535 repeats [Arabidopsis thaliana] gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana] gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana] gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/540 (70%), Positives = 447/540 (82%), Gaps = 9/540 (1%)
Query: 1 MALIKSNHRLPFSLS---QQIPKAYSFFSS--LAPLNEDDDGDCVTNPNSSPDTPFLSPE 55
MAL++S L +LS +PK +S ++ L+ D+ +T S P +P L+PE
Sbjct: 1 MALLRSKLHLSRTLSFISPLLPKTFSTSATSLLSDHENDESAATITAAVSVPISPLLTPE 60
Query: 56 ETLISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHV 115
+T EKFHS+IKDH+RKNP +S ++ LNP T+ +LSL FSQI T+ +SPS VR V
Sbjct: 61 DTQTVEKFHSIIKDHYRKNP--TSPNDAILNPSLTLHALSLDFSQIETSQ-VSPSVVRCV 117
Query: 116 IEKSCGVRHGIPLLQVLSFFNWVTARPEFVH-SPDLYHEMINLAGKVRQFDLAWHFIDLM 174
IEK VRHGIPL Q L+FFNW T+R ++ H SP Y+EMI+L+GKVRQFDLAWH IDLM
Sbjct: 118 IEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLM 177
Query: 175 KSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234
KSRNVEI+++TF+IL+RRYVRAGLA+EAVH FNRME+YGC PDKIAFSIVIS L RKRRA
Sbjct: 178 KSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRA 237
Query: 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVI 294
SEAQSFFDSLKD+FEPDVIVYTNLVRGWCRAG ISEAE+VF+EMK+AGI+PNVYTYSIVI
Sbjct: 238 SEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVI 297
Query: 295 DALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE 354
DALCRCGQI+RAHDVFA+ML+ GC PN+ITFNNLMRVHVKA RTEKVLQVYNQMK+LGCE
Sbjct: 298 DALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCE 357
Query: 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRM 414
DTITYNFLI+ HC+D LE+A+KVLN+M++K C NASTFN IFR I K DVNGAHRM
Sbjct: 358 PDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRM 417
Query: 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG 474
Y KM + KCEPNTVTYNILM+MF SKSTDMVLK+KKEM++ EVEPNVNTYR+L+TM+CG
Sbjct: 418 YSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCG 477
Query: 475 MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
MGHWNNAYK +EM+EEKCL P S+YEMVL QLRRAGQL+KHEELVEKM+ +G ARPL
Sbjct: 478 MGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVARPL 537
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/536 (71%), Positives = 436/536 (81%), Gaps = 10/536 (1%)
Query: 1 MALIKSNHRLPFSLSQQIPKAYSFFSSLAPLNEDDDGDCVTNPNSSPD--TPFLSPEETL 58
MA IK++ R+P LS P FSS + + + D P LS EET
Sbjct: 1 MAAIKASLRVPAPLSHLSPTFLRSFSSSITTSSSSSSIISQSQHLEEDYINPSLSFEETT 60
Query: 59 ISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHVIEK 118
++ KFHSLIKDHHR+NPN S + PS SLSL FS ST+ +SPS V HVIEK
Sbjct: 61 LANKFHSLIKDHHRRNPNFSLPNTPS-------HSLSLDFSHFSTS-PVSPSLVSHVIEK 112
Query: 119 SCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN 178
VRHGIP Q LSFFNW T+RP F H P+ Y+EMI+LAGKVR FDL W IDLMK+RN
Sbjct: 113 CAAVRHGIPFFQALSFFNWATSRPGFTHHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARN 172
Query: 179 VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238
VEI+++TFSIL+RRYVRAGLA+EAVHAFNRME+Y C PDKIAFSI+ISILCRKRRA+EAQ
Sbjct: 173 VEISIETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQ 232
Query: 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298
SFFDSLKDKFEPDVIVYTNLVRGWCRAGNI EAERVF EMK+AG PNVYTY+IVIDALC
Sbjct: 233 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALC 292
Query: 299 RCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTI 358
RCGQITRAHDVFAEML+VGCEPNSITFNNL+RVHVKA RTEKVLQVYNQMKR+GC DT+
Sbjct: 293 RCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTV 352
Query: 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKM 418
TYNFLI+ HCKDG L++A+KVLNSMV+KGC+PNASTFN +F I+KL DVNGAHR+Y KM
Sbjct: 353 TYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKM 412
Query: 419 KDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHW 478
K+LKC+ NTVTYNILM+MF +KSTDMVLKLKKEM+E++VEPNVNTY +LI MYCGMGHW
Sbjct: 413 KELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGHW 472
Query: 479 NNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
NNAYK+ REM+EEKCLKP VYE VLQQLR+AGQL+KHEELV MVDRGF RPL
Sbjct: 473 NNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVDRGFATRPL 528
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/538 (72%), Positives = 444/538 (82%), Gaps = 11/538 (2%)
Query: 1 MALIKSNHRLP---FSLSQQIPKAYSFFSSLAPLNEDDDGDCVTNPNSSPDTPFLSPEET 57
MAL+KS RL +SLS ++ +SS + +E++D V +S LS EET
Sbjct: 1 MALVKSKVRLSLLRYSLSPVSQHSFRLYSSSSEASEEEDE--VKESGNSAVNIVLSSEET 58
Query: 58 LISEKFHSLIKDHHRKNPNPSSNSNP-SLNPDFTIPSLSLGFSQISTAHSISPSTVRHVI 116
L+ EKFHSLIK H RKN NP +P S NP +TI SLS FSQIS+A S+S + VR VI
Sbjct: 59 LVVEKFHSLIKSHQRKNTNP----DPISPNPHYTIASLSFDFSQISSADSVSSAIVRRVI 114
Query: 117 EKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKS 176
EK GVRHGIP Q L+FFNW T EF HSP+ Y EMI+LAGKVRQFDLAW IDLMK+
Sbjct: 115 EKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKT 174
Query: 177 RNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASE 236
RNVEI V+TF+ILVRRYV+AGLAAEAVHAFNRME+YGC PDKIAFS+VIS L +KRRA E
Sbjct: 175 RNVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIE 234
Query: 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296
AQSFFDSLKD+FEPDV+VYT+LV GWCRAGNISEAERVF EMKMAGIQPNVYTYSIVIDA
Sbjct: 235 AQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDA 294
Query: 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD 356
LCR GQITRAHDVF+EM++VGC+PN+ITFNNLMRVHVKA RTEKVLQVYNQMKRLGC D
Sbjct: 295 LCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPD 354
Query: 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG 416
ITYNFLI+ HC+D LE+A+K+LNS V+KGCN NAS+FN IF CISKLGDVN AHRM+
Sbjct: 355 AITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFA 413
Query: 417 KMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMG 476
KMKDLKC PNTVTYNILM+MFA KSTDMVLKL+KEM+ENE+EPN NTYR+LI+ +CG+G
Sbjct: 414 KMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIG 473
Query: 477 HWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
HWNNAY + +EMIEEKCL+P VYEMVLQQLR+AGQL+KHEELVEKMV+RGF RPL
Sbjct: 474 HWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFVTRPL 531
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa] gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/484 (75%), Positives = 422/484 (87%), Gaps = 5/484 (1%)
Query: 52 LSPEETLISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQI-STAHSISPS 110
LSPE+TLI+EKFHSL+K+H+ NP + P +P +TI SLSL FSQI ST SISPS
Sbjct: 1 LSPEDTLIAEKFHSLMKEHYLSNPRKT----PPPDPTYTISSLSLDFSQIISTVRSISPS 56
Query: 111 TVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHF 170
VRHVI +S VRHGIP+ QVL+FFNW + + F SP+ Y+EM++ +G+V FD+AW+F
Sbjct: 57 IVRHVIAQSSAVRHGIPVPQVLAFFNWASNQDGFRKSPEAYNEMVDFSGQVMMFDVAWYF 116
Query: 171 IDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR 230
IDLMK+RNV++TV+TF IL+RRYVRAGLAAEA+HAFNRME+Y C PDKIAFSI+ISILCR
Sbjct: 117 IDLMKARNVDVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCR 176
Query: 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTY 290
+RRAS+AQ FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVF EMK+AGI+PNVYTY
Sbjct: 177 ERRASQAQEFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTY 236
Query: 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKR 350
SIVID+LCRCGQITRAHD+FAEML+ GC+PNSIT+N+LMR+HVKA RTEKVLQVYNQMKR
Sbjct: 237 SIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKR 296
Query: 351 LGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNG 410
LGCE DT+TYNFLI+ HCKD LEDAIKV+ M +KGC PNASTFN +F CI+KLGDVN
Sbjct: 297 LGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNA 356
Query: 411 AHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470
AHRMY KMK+L CE NTVTYN LM+MF SKSTDMVLKLK EM+EN++EPNVNTY++LIT
Sbjct: 357 AHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLIT 416
Query: 471 MYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFT 530
MYCGMGHWNNAYK+ REMI+EKCL+P VY+MVLQQLR+AGQL+KHEELVEKMVDRGF
Sbjct: 417 MYCGMGHWNNAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAGQLKKHEELVEKMVDRGFV 476
Query: 531 ARPL 534
RPL
Sbjct: 477 TRPL 480
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/542 (70%), Positives = 446/542 (82%), Gaps = 13/542 (2%)
Query: 1 MALIKSNHRLPFSLS---QQIPKAYSFFSSLAPLNE---DDDGDCVTNPNSSPDTPFLSP 54
MAL++S L +LS ++PK +S S + LN+ D+ VT S P + L+P
Sbjct: 1 MALLRSKLHLSRTLSFISPRLPKPFST-SPTSLLNDHENDESAATVTGVVSVPVSSLLTP 59
Query: 55 EETLISEKFHSLIKDHHRKNP-NPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVR 113
E+T EKFHS+IKDH+RKNP NP+ + LNP T+P+LSL FSQI A ISPS VR
Sbjct: 60 EDTQTVEKFHSIIKDHYRKNPTNPN---DAVLNPSLTLPALSLDFSQID-ASRISPSVVR 115
Query: 114 HVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVH-SPDLYHEMINLAGKVRQFDLAWHFID 172
VIEK VRHGIPL Q L+FFNW T+R ++ SP Y+EMI+LAGKVRQFDLAWH ID
Sbjct: 116 CVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDQKSPHPYNEMIDLAGKVRQFDLAWHLID 175
Query: 173 LMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR 232
LMKSRNVEI+++TF+IL+RRYVRAGLA+EAVH FNRME+YGC PD+IAFSIVIS L RKR
Sbjct: 176 LMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKR 235
Query: 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSI 292
RASEAQSFFDSLKD+FEPDVIVYTNLVRGWCRAG ISEAE+VF++MK+AGI+PNVYTYSI
Sbjct: 236 RASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSI 295
Query: 293 VIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352
VIDALCRCGQI+RAHDVFA+ML+ GC PN+ITFNNLMRVHVKA R EKVLQVYNQMK+LG
Sbjct: 296 VIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLG 355
Query: 353 CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAH 412
CE DTITYNFLI+ HC+D LE+A+KVLN+M++K C NASTFN IFR I K DVNGAH
Sbjct: 356 CEPDTITYNFLIETHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAH 415
Query: 413 RMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472
RMY KM + KCEPNTVTYNILM+MFA SKSTDMVLK+KK+M++ EVEPNVNTYR+L+TM+
Sbjct: 416 RMYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMF 475
Query: 473 CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTAR 532
CGMGHWNNAYK +EM+EEKCL P S+YEMVL QLRRAGQL+KHEELVEKM+ +G R
Sbjct: 476 CGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVTR 535
Query: 533 PL 534
PL
Sbjct: 536 PL 537
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/537 (71%), Positives = 441/537 (82%), Gaps = 9/537 (1%)
Query: 1 MALIKSNHRLP---FSLSQQIPKAYSFFSSLAPLNEDDDGDCVTNPNSSPDTPFLSPEET 57
MAL+KS RL +SLS ++ +SS + +E++D V +S LS EET
Sbjct: 1033 MALVKSKVRLSLLRYSLSPVSQHSFRLYSSSSEASEEEDE--VKESGNSAVNIVLSSEET 1090
Query: 58 LISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHVIE 117
L+ EKFHSLIK H RKN NP S NP +TI SLS FSQIS+A S+S + VR VIE
Sbjct: 1091 LVVEKFHSLIKSHQRKNTNPDPISP---NPHYTIASLSFDFSQISSADSVSSAIVRRVIE 1147
Query: 118 KSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR 177
K GVRHGIP Q L+FFNW T EF HSP+ Y EMI+LAGKVRQFDLAW IDLMK+R
Sbjct: 1148 KCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTR 1207
Query: 178 NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEA 237
NVEI V+TF+ILVRRYV+AGLAAEAVHAFNRME+YGC PDKIAFS+VIS L +KRRA EA
Sbjct: 1208 NVEIPVETFTILVRRYVKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEA 1267
Query: 238 QSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDAL 297
QSFFDSLKD+FEPDV+VYT+LV GWCRAGNISEAERVF EMKMAGI PNVYTYSIVIDAL
Sbjct: 1268 QSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDAL 1327
Query: 298 CRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT 357
CR GQITRAHDVF+EM++VGC+PN+ITFNNLMRVHVKA RTEKVLQVYNQMKRLGC D
Sbjct: 1328 CRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDA 1387
Query: 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417
ITYNFLI+ HC+D LE+A+K+LNS V+KGCN NAS+FN IF CISKLGDVN AHRM+ K
Sbjct: 1388 ITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAK 1446
Query: 418 MKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477
MKDLKC PNTVTYNILM+MFA KSTDMVLKL+KEM+ENE+EPN NTYR+LI+ +CG+GH
Sbjct: 1447 MKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGH 1506
Query: 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
WNNAY + +EMIEEKCL+P VYEMVLQQLR+AGQL+KHEELVEKMV+RGF RPL
Sbjct: 1507 WNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFVTRPL 1563
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/537 (69%), Positives = 441/537 (82%), Gaps = 10/537 (1%)
Query: 1 MALIKS--NHRLPFSLSQQIPKAYSFFSSLAPLNEDDDGDCVTNPNSSPDTPFLSPEETL 58
MA IKS N L SLS +P + SS ++E D D N++P LSPE+T
Sbjct: 1 MAFIKSRVNFHLHHSLSPFLPHTFRLCSSSPLVSEHDTND----NNTTPQNTNLSPEDTH 56
Query: 59 ISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHVIEK 118
I +KFH++IKDH+RKNPNP++ S PSLN +IP LS+ FS+IST +S+SPS R IEK
Sbjct: 57 IVDKFHTIIKDHYRKNPNPNAVS-PSLN--LSIPDLSIEFSKISTVYSVSPSITRRAIEK 113
Query: 119 SCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN 178
GVRHGIP LQ L+FFNW T F SP+ Y+EMI+LAGK+R FDLAWH IDLMKSR
Sbjct: 114 CSGVRHGIPFLQSLAFFNWATTLEGFPSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRG 173
Query: 179 VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238
V ITV TFS+LVRRYVRAGLAAEAVHAFNRME+YGC PDK++FSIVIS LC+KRRASEA+
Sbjct: 174 VRITVSTFSVLVRRYVRAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAE 233
Query: 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298
FFDSLK KFEPDVIVYT+LV GWCRAG+I++AE VF +MK AG++PNVYTYSIVID+LC
Sbjct: 234 LFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLC 293
Query: 299 RCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTI 358
RCGQITRAHDVF+EM++ GC+PN++TFN+LMRVHVKA RTEKVLQVYNQMKRLGC ADTI
Sbjct: 294 RCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTI 353
Query: 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKM 418
+YNFLI+ HCKD L++A+KVL++MV+KG PNASTFN IF CI++L DVNGAHRMY KM
Sbjct: 354 SYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKM 413
Query: 419 KDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHW 478
K+LKC PNT+TYNILM+MFA SKS DMVLKLKKEM+E+EVEPNVNTYRILI M+C GHW
Sbjct: 414 KELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGHW 473
Query: 479 NNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTA-RPL 534
NNAY ++EM+EEKCLKP S+YE VL+ LR AGQL+KHEELVEKMV RGF + RPL
Sbjct: 474 NNAYNLMKEMVEEKCLKPNLSIYETVLELLRNAGQLKKHEELVEKMVARGFVSPRPL 530
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Cucumis sativus] gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/537 (69%), Positives = 432/537 (80%), Gaps = 6/537 (1%)
Query: 1 MALIKSNHRLP---FSLSQQIPKAYSFFSSLAPLNEDDDGDCVTNPNSSPDTPFLSPEET 57
MALIKS LP SLS +I SF SS + + D T+ + P LSPE+
Sbjct: 1 MALIKSKLNLPPFLSSLSHRIQNHRSFSSSPSISDPPLQDDLATDSPQNASIPLLSPEQI 60
Query: 58 LISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHVIE 117
+SEKFH+LIK+++R+NP P +S P P+FTI SLS SQIS HS+SP+ VR+VIE
Sbjct: 61 QVSEKFHALIKEYYRRNPGP--DSTPPC-PNFTISSLSNDLSQISAPHSVSPAVVRYVIE 117
Query: 118 KSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR 177
KS VRHGIP L L+FFNW TA F HSP Y+EMI+LAGKV+QF LAW+ IDLMK+R
Sbjct: 118 KSGAVRHGIPFLPALAFFNWATAGEGFEHSPQPYNEMIDLAGKVKQFGLAWYLIDLMKAR 177
Query: 178 NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEA 237
NVEITV TFS+LVRRYVRAGLAAEAVHAFNRME+YGC D IAFS VISILC+KRRA EA
Sbjct: 178 NVEITVVTFSMLVRRYVRAGLAAEAVHAFNRMEDYGCNADIIAFSNVISILCKKRRAVEA 237
Query: 238 QSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDAL 297
QSFFD+LK KFEPDVIVYT+LV GWCRAG+ISEAE VFREMKMAGI PNVYTYSIVIDAL
Sbjct: 238 QSFFDNLKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDAL 297
Query: 298 CRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT 357
CR GQITRAHDVFAEML+ GC PNS+TFNNL+RVH++A RTEKVLQVYNQMKRL C AD
Sbjct: 298 CRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADL 357
Query: 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417
ITYNFLI+ HCKD L +AIKVLNSM + C PNAS+FN IFRCI+K DVNGAHRM+ +
Sbjct: 358 ITYNFLIETHCKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFAR 417
Query: 418 MKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477
MK++ C+PNTVTYNILM+MFA KS DM+ KLKKEM+E EVEPN NTYR LI +YCGMGH
Sbjct: 418 MKEVGCKPNTVTYNILMRMFAVPKSADMIFKLKKEMDEEEVEPNFNTYRELIALYCGMGH 477
Query: 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
WN+AY + REMI+EKC+KP +Y+MVL++LR+AGQL+KHEELV+KMV+RGF +R L
Sbjct: 478 WNHAYMFFREMIDEKCIKPSMPLYKMVLEELRKAGQLKKHEELVDKMVERGFASRNL 534
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/537 (68%), Positives = 436/537 (81%), Gaps = 11/537 (2%)
Query: 1 MALIKSNHRLPFSLSQQIPKAYSFFSSLAPLNEDDDGDCVTNPNSSPDTPF---LSPEET 57
MA IK + R SLS + + +SS A V + PDTP LSPEET
Sbjct: 36 MAFIKPSARFRHSLSPLLSPTFKPYSSSA-------SALVPELDIQPDTPQNPNLSPEET 88
Query: 58 LISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTVRHVIE 117
+++KFH+ IK+HHR+NP P+ N+ P + TIP LSL FS IS AH ISPS VIE
Sbjct: 89 TLADKFHAAIKEHHRRNPTPNPNAPPPTP-NLTIPDLSLAFSAISAAHPISPSVAHRVIE 147
Query: 118 KSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR 177
K GVRHGIP LQ L+FFNW ++ F SP+ Y+EM++LAGK+RQFDLAWH IDLMKSR
Sbjct: 148 KCGGVRHGIPFLQSLAFFNWSSSLDGFPASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSR 207
Query: 178 NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEA 237
VEITV TFS LVRRYVRAGLAAEAVHAFNRME+YGC PD +AFSIVIS LC+KRRA+EA
Sbjct: 208 GVEITVHTFSALVRRYVRAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEA 267
Query: 238 QSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDAL 297
QSFFDSLK +FEPDV+VYT+LV GWCRAG+IS+AE VF +MKMAGI+PNVYTYSIVID+L
Sbjct: 268 QSFFDSLKHRFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSL 327
Query: 298 CRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT 357
CRCGQITRAHDVF+EM++ GC+PN++TFN+LMRVHVKA RTEKVL+VYNQMKRLGC ADT
Sbjct: 328 CRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADT 387
Query: 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417
I+YNF+I+ HC+D LE+A K+LN MV+KG PNASTFN IF CI+KL DVNGAHRMY +
Sbjct: 388 ISYNFIIESHCRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYAR 447
Query: 418 MKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477
MK+L C+PNT+TYNILM+MFA S+STDMVLK+KKEM+E++VEPNVNTYRILI+M+C M H
Sbjct: 448 MKELNCQPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKH 507
Query: 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
WNNAYK + EM+EEKCL+P SVYE VL+ LR+AGQL+KHEELV+KMV RGF RPL
Sbjct: 508 WNNAYKLMMEMVEEKCLRPNLSVYETVLELLRKAGQLKKHEELVDKMVARGFVTRPL 564
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/538 (66%), Positives = 412/538 (76%), Gaps = 46/538 (8%)
Query: 1 MALIKSNHRLP---FSLSQQIPKAYSFFSSLAPLNEDDDGDCVTNPNSSPDTPFLSPEET 57
MAL+KS RL +SLS ++ +SS + +E++D V +S LS EET
Sbjct: 1 MALVKSKVRLSLLRYSLSPVSQHSFRLYSSSSEASEEEDE--VKESGNSAVNIVLSSEET 58
Query: 58 LISEKFHSLIKDHHRKNPNPSSNSNP-SLNPDFTIPSLSLGFSQISTAHSISPSTVRHVI 116
L+ EKFHSLIK H RKN NP +P S NP +TI SLS FSQIS+A S+S + VR VI
Sbjct: 59 LVVEKFHSLIKSHQRKNTNP----DPISPNPHYTIASLSFDFSQISSADSVSSAIVRRVI 114
Query: 117 EKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKS 176
EK GVRHGIP Q L+FFNW T EF HSP+ Y EMI+LAGK
Sbjct: 115 EKCGGVRHGIPFPQTLAFFNWATNLEEFGHSPEPYMEMIDLAGK---------------- 158
Query: 177 RNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASE 236
AGLAAEAVHAFNRME+YGC PDKIAFS+VIS L +KRRA E
Sbjct: 159 -------------------AGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIE 199
Query: 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296
AQSFFDSLKD+FEPDV+VYT+LV GWCRAGNISEAERVF EMKMAGIQPNVYTYSIVIDA
Sbjct: 200 AQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDA 259
Query: 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD 356
LCR GQITRAHDVF+EM++VGC+PN+ITFNNLMRVHVKA RTEKVLQVYNQMKRLGC D
Sbjct: 260 LCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPD 319
Query: 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG 416
ITYNFLI+ HC+D LE+A+K+LNS V+KGCN NAS+FN IF CISKLGDVN AHRM+
Sbjct: 320 AITYNFLIESHCRDDNLEEAVKILNS-VKKGCNLNASSFNPIFGCISKLGDVNSAHRMFA 378
Query: 417 KMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMG 476
KMKDLKC PNTVTYNILM+MFA KSTDMVLKL+KEM+ENE+EPN NTYR+LI+ +CG+G
Sbjct: 379 KMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIG 438
Query: 477 HWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
HWNNAY + +EMIEEKCL+P VYEMVLQQLR+AGQL+KHEELVEKMV+RGF RPL
Sbjct: 439 HWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNRGFVTRPL 496
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 534 | ||||||
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.992 | 0.986 | 0.670 | 4.3e-189 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.767 | 0.803 | 0.305 | 4.9e-53 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.792 | 0.663 | 0.263 | 9.5e-50 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.807 | 0.824 | 0.297 | 2.5e-49 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.737 | 0.701 | 0.292 | 1.1e-48 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.730 | 0.652 | 0.272 | 7.7e-48 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.634 | 0.532 | 0.273 | 1.8e-46 | |
| TAIR|locus:2204913 | 491 | AT1G02420 "AT1G02420" [Arabido | 0.777 | 0.845 | 0.266 | 2e-45 | |
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.698 | 0.615 | 0.245 | 4.3e-43 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.756 | 0.652 | 0.274 | 2.2e-41 |
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1833 (650.3 bits), Expect = 4.3e-189, P = 4.3e-189
Identities = 363/541 (67%), Positives = 424/541 (78%)
Query: 1 MALIKSNHRLPFSLS---QQIPKAYSFFS-SLAPLNEDDDGDC-VTNPNSSPDTPFLSPE 55
MAL++S L +LS +PK +S + SL +E+D+ +T S P +P L+PE
Sbjct: 1 MALLRSKLHLSRTLSFISPLLPKTFSTSATSLLSDHENDESAATITAAVSVPISPLLTPE 60
Query: 56 ETLISEKFHSLIKDHHRKXXXXXXXXXXXXXXDFTIPSLSLGFSQISTAHSISPSTVRHV 115
+T EKFHS+IKDH+RK T+ +LSL FSQI T+ +SPS VR V
Sbjct: 61 DTQTVEKFHSIIKDHYRKNPTSPNDAILNPS--LTLHALSLDFSQIETSQ-VSPSVVRCV 117
Query: 116 IEKSCG-VRHGIPLLQVLSFFNWVTARPEFVH-SPDLYHEMINLAGKVRQFDLAWHFIDL 173
IEK CG VRHGIPL Q L+FFNW T+R ++ H SP Y+EMI+L+GKVRQFDLAWH IDL
Sbjct: 118 IEK-CGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDL 176
Query: 174 MKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233
MKSRNVEI+++TF+IL+RRYVRAGLA+EAVH FNRME+YGC PDKIAFSIVIS L RKRR
Sbjct: 177 MKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRR 236
Query: 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIV 293
ASEAQSFFDSLKD+FEPDVIVYTNLVRGWCRAG ISEAE+VF+EMK+AGI+PNVYTYSIV
Sbjct: 237 ASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIV 296
Query: 294 IDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC 353
IDALCRCGQI+RAHDVFA+ML+ GC PN+ITFNNLMRVHVKA RTEKVLQVYNQMK+LGC
Sbjct: 297 IDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGC 356
Query: 354 EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHR 413
E DTITYNFLI+ HC+D LE+A+KVLN+M++K C NASTFN IFR I K DVNGAHR
Sbjct: 357 EPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHR 416
Query: 414 MYGKMKDLKCEPNTVTYNILMQMFATSKSTDXXXXXXXXXXXXXXXXXXXTYRILITMYC 473
MY KM + KCEPNTVTYNILM+MF SKSTD TYR+L+TM+C
Sbjct: 417 MYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFC 476
Query: 474 GMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARP 533
GMGHWNNAYK +EM+EEKCL P S+YEMVL QLRRAGQL+KHEELVEKM+ +G ARP
Sbjct: 477 GMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVARP 536
Query: 534 L 534
L
Sbjct: 537 L 537
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 129/422 (30%), Positives = 211/422 (50%)
Query: 107 ISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDL 166
+SP+ + V++K G+ LS F W + F H+ Y+ +I GK++QF L
Sbjct: 92 LSPALIEEVLKKLSNA--GV---LALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKL 146
Query: 167 AWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226
W +D MK++ + ++ +TF+++ RRY RA EA+ AF++MEE+G + F+ ++
Sbjct: 147 IWSLVDDMKAKKL-LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLD 205
Query: 227 ILCRKRRASEAQSFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285
L + R +AQ FD +K K FEPD+ YT L+ GW + N+ + V REMK G +P
Sbjct: 206 TLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEP 265
Query: 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY 345
+V Y I+I+A C+ + A F EM + C+P+ F +L+ + L+ +
Sbjct: 266 DVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFF 325
Query: 346 NQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405
+ K G + TYN L+ +C ++EDA K ++ M KG PNA T+++I + ++
Sbjct: 326 ERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRM 385
Query: 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDXXXXXXXXXXXXXXXXXXXTY 465
A+ +Y M CEP TY I+++MF + D +
Sbjct: 386 QRSKEAYEVYQTMS---CEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMF 442
Query: 466 RILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525
LIT C + A +Y EM++ PG ++ + Q L G+ K +LV KM
Sbjct: 443 SSLITALCHENKLDEACEYFNEMLDVGIRPPGH-MFSRLKQTLLDEGRKDKVTDLVVKM- 500
Query: 526 DR 527
DR
Sbjct: 501 DR 502
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 114/433 (26%), Positives = 209/433 (48%)
Query: 91 IPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDL 150
+P L L ++ + + P + V+ + CG + FF W T +P + HS ++
Sbjct: 81 VPKLELALNE--SGIDLRPGLIIRVLSR-CGDAGNLGY----RFFLWATKQPGYFHSYEV 133
Query: 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRM 209
M+ + K+RQF W I+ M+ N E I + F +L+RR+ A + +AV + M
Sbjct: 134 CKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEM 193
Query: 210 EEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269
+YG PD+ F ++ LC+ EA F+ +++KF P++ +T+L+ GWCR G +
Sbjct: 194 PKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYGWCREGKLM 253
Query: 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329
EA+ V +MK AG++P++ ++ ++ G++ A+D+ +M + G EPN + L+
Sbjct: 254 EAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLI 313
Query: 330 RVHVKAS-RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC 388
+ + R ++ ++V+ +M+R GCEAD +TY LI CK G ++ VL+ M +KG
Sbjct: 314 QALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGV 373
Query: 389 NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDXXXX 448
P+ T+ I K + KMK C P+ + YN+++++
Sbjct: 374 MPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVR 433
Query: 449 XXXXXXXXXXXXXXXTYRILITMYCGMGHWNNAYKYIREMIEEKCLK-PGSSVYEMVLQQ 507
T+ I+I + G A + +EM+ P + +L
Sbjct: 434 LWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNN 493
Query: 508 LRRAGQLQKHEEL 520
L R +L+ +++
Sbjct: 494 LVRDDKLEMAKDV 506
|
|
| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 131/440 (29%), Positives = 210/440 (47%)
Query: 88 DFTIPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHS 147
D P L + ++ + +S + V V+ K C G P + FF W P+F HS
Sbjct: 47 DHRNPKDDLEHTLVAYSPRVSSNLVEQVL-KRCK-NLGFPAHR---FFLWARRIPDFAHS 101
Query: 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNV-EITVDTFSILVRRYVRAGLAAEAVHAF 206
+ YH ++ + G +QF L W F+ + N EI+ F I+ R Y RA L +EA AF
Sbjct: 102 LESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAF 161
Query: 207 NRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRA 265
NRM E+G P ++ LC K+ + AQ FF K P Y+ LVRGW R
Sbjct: 162 NRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARI 221
Query: 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITF 325
+ S A +VF EM ++ Y+ ++DALC+ G + + +F EM +G +P++ +F
Sbjct: 222 RDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSF 281
Query: 326 NNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385
+ + A +V ++MKR + T+N +I CK+ K++DA +L+ M++
Sbjct: 282 AIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQ 341
Query: 386 KGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDX 445
KG NP+ T+N I +VN A ++ +M KC P+ TYN+++++ D
Sbjct: 342 KGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDR 401
Query: 446 XXXXXXXXXXXXXXXXXXTYRILIT-MYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMV 504
TY ++I + G A +Y MI+E + P S+ EM+
Sbjct: 402 ATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEG-IPPYSTTVEML 460
Query: 505 LQQLRRAGQLQKHEELVEKM 524
+L GQ+ + L KM
Sbjct: 461 RNRLVGWGQMDVVDVLAGKM 480
|
|
| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 120/410 (29%), Positives = 195/410 (47%)
Query: 130 QVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE---ITVDTF 186
Q FF W ++ +VHS Y+ M+++ GK R FDL W ++ M ++N E +T+DT
Sbjct: 148 QAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEM-NKNEESKLVTLDTM 206
Query: 187 SILVRRYVRAGLAAEAVHAFNRMEE-YGCAPDKIAFSIVISILCRKRRASEAQSFFDSLK 245
S ++RR ++G +AV AF ME+ YG D IA + ++ L ++ A F L
Sbjct: 207 SKVMRRLAKSGKYNKAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLF 266
Query: 246 DKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305
D +PD + L+ G+C+A +A + MK+ P+V TY+ ++A C+ G R
Sbjct: 267 DTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRR 326
Query: 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365
+++ EM E GC PN +T+ +M K+ + + L VY +MK GC D Y+ LI
Sbjct: 327 VNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIH 386
Query: 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFN-MIFRCISKLGDVNGAHRMYGKMKDLK-- 422
K G+ +DA ++ M +G + +N MI + D A R+ +M+D +
Sbjct: 387 ILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRD-EMALRLLKRMEDEEGE 445
Query: 423 -CEPNTVTYNILMQMFATSKSTDXXXXXXXXXXXXXXXXXXXTYRILITMYCGMGHWNNA 481
C PN TY L++M K TY +LI C G A
Sbjct: 446 SCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEA 505
Query: 482 YKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQ---KHEELVEK--MVD 526
+ E + K + P S +M++ +L + + K + LV+ M+D
Sbjct: 506 CLFFEEAVR-KGMVPRDSTCKMLVDELEKKNMAEAKLKIQSLVQSKTMID 554
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
Identities = 109/400 (27%), Positives = 207/400 (51%)
Query: 132 LSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVR 191
LS + ++ P+ V + + + +GK++Q A +D M R+ V T++IL+
Sbjct: 192 LSVLDRMSVSPDVVTYNTILRSLCD-SGKLKQ---AMEVLDRMLQRDCYPDVITYTILIE 247
Query: 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK-FEP 250
R A+ + M + GC PD + ++++++ +C++ R EA F + + +P
Sbjct: 248 ATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQP 307
Query: 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVF 310
+VI + ++R C G +AE++ +M G P+V T++I+I+ LCR G + RA D+
Sbjct: 308 NVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDIL 367
Query: 311 AEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD 370
+M + GC+PNS+++N L+ K + ++ ++ +M GC D +TYN ++ CKD
Sbjct: 368 EKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427
Query: 371 GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKM--KDLKCEPNTV 428
GK+EDA+++LN + KGC+P T+N + ++K G A ++ +M KDLK P+T+
Sbjct: 428 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLK--PDTI 485
Query: 429 TYNILMQMFATSKSTDXXXXXXXXXXXXXXXXXXXTYRILITMYCGMGHWNNAYKYIREM 488
TY+ L+ + D T+ ++ C + A ++ M
Sbjct: 486 TYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFM 545
Query: 489 IEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528
I C KP + Y ++++ L G ++ EL+ ++ ++G
Sbjct: 546 INRGC-KPNETSYTILIEGLAYEGMAKEALELLNELCNKG 584
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 95/347 (27%), Positives = 180/347 (51%)
Query: 91 IPSLSLGFSQISTAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDL 150
+P L L ++ + P + V+ + CG + FF W +P + HS ++
Sbjct: 97 VPKLELALNESGV--ELRPGLIERVLNR-CGDAGNLGY----RFFVWAAKQPRYCHSIEV 149
Query: 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRM 209
Y M+ + K+RQF W I+ M+ N + I + F +LV+R+ A + +A+ + M
Sbjct: 150 YKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEM 209
Query: 210 EEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269
++G PD+ F ++ LC+ +A F+ ++ +F ++ +T+L+ GWCR G +
Sbjct: 210 PKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMM 269
Query: 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329
EA+ V +M AG +P++ Y+ ++ G++ A+D+ +M G EPN+ + L+
Sbjct: 270 EAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLI 329
Query: 330 RVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN 389
+ K R E+ ++V+ +M+R CEAD +TY L+ CK GK++ VL+ M++KG
Sbjct: 330 QALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLM 389
Query: 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQM 436
P+ T+ I K + KM+ ++ P+ YN+++++
Sbjct: 390 PSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRL 436
|
|
| TAIR|locus:2204913 AT1G02420 "AT1G02420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
Identities = 114/427 (26%), Positives = 209/427 (48%)
Query: 102 STAHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKV 161
S+ +S + V+ K HG P+ Q L F+ + +A F HS M+ + G+
Sbjct: 64 SSGIHLSKDLIDRVL-KRVRFSHGNPI-QTLEFYRYASAIRGFYHSSFSLDTMLYILGRN 121
Query: 162 RQFDLAWHFIDLMKSRNVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD--- 217
R+FD W + K ++ I+ T +++ R + + V +F + + PD
Sbjct: 122 RKFDQIWELLIETKRKDRSLISPRTMQVVLGRVAKLCSVRQTVESFWKFKRL--VPDFFD 179
Query: 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFRE 277
F+ ++ LC+++ ++A++ + SLK +F+PD+ + L+ GW + EAE F E
Sbjct: 180 TACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGWKSS---EEAEAFFEE 236
Query: 278 MKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337
MK G++P+V TY+ +ID C+ +I +A+ + +M E P+ IT+ ++ +
Sbjct: 237 MKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQ 296
Query: 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNM 397
+K +V +MK GC D YN I C +L DA K+++ MV+KG +PNA+T+N+
Sbjct: 297 PDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNATTYNL 356
Query: 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDXXXXXXXXXXXXX 457
FR +S D+ + +Y +M +C PNT + L++MF + D
Sbjct: 357 FFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDMVVKG 416
Query: 458 XXXXXXTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKH 517
+L+ + C + A K + EM+E K +P + ++ + + A + +
Sbjct: 417 FGSYSLVSDVLLDLLCDLAKVEEAEKCLLEMVE-KGHRPSNVSFKRIKLLMELANKHDEV 475
Query: 518 EELVEKM 524
L++KM
Sbjct: 476 NNLIQKM 482
|
|
| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 4.3e-43, Sum P(3) = 4.3e-43
Identities = 93/379 (24%), Positives = 195/379 (51%)
Query: 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYG 213
MI L + R D+ + + ++++ R ++ V TF++++ + G +A M+ YG
Sbjct: 195 MIALLKENRSADVEYVYKEMIR-RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYG 253
Query: 214 CAPDKIAFSIVISILCR---KRRASEAQSFF-DSLKDKFEPDVIVYTNLVRGWCRAGNIS 269
C+P+ ++++ +I C+ + +A + + +++ P++ + L+ G+ + N+
Sbjct: 254 CSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLP 313
Query: 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329
+ +VF+EM ++PNV +Y+ +I+ LC G+I+ A + +M+ G +PN IT+N L+
Sbjct: 314 GSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALI 373
Query: 330 RVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN 389
K ++ L ++ +K G T YN LID +CK GK++D + M R+G
Sbjct: 374 NGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIV 433
Query: 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDXXXXX 449
P+ T+N + + + G++ A +++ ++ K P+ VT++ILM+ + +
Sbjct: 434 PDVGTYNCLIAGLCRNGNIEAAKKLFDQLTS-KGLPDLVTFHILMEGYCRKGESRKAAML 492
Query: 450 XXXXXXXXXXXXXXTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLR 509
TY I++ YC G+ A +M +E+ L+ + Y ++LQ
Sbjct: 493 LKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYS 552
Query: 510 RAGQLQKHEELVEKMVDRG 528
+ G+L+ L+ +M+++G
Sbjct: 553 QKGKLEDANMLLNEMLEKG 571
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 113/412 (27%), Positives = 196/412 (47%)
Query: 122 VRHGIPLLQV---LSFF-NWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR 177
+R+GI ++V + F + + +RP + +P ++ + + + +Q+DL F M+
Sbjct: 42 LRNGIVDIKVNDAIDLFESMIQSRP--LPTPIDFNRLCSAVARTKQYDLVLGFCKGMELN 99
Query: 178 NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEA 237
+E + T +I++ Y R A R + G PD I FS +++ C + R SEA
Sbjct: 100 GIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEA 159
Query: 238 QSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296
+ D + + K PD++ + L+ G C G +SEA + M G QP+ TY V++
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219
Query: 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD 356
LC+ G A D+F +M E + + + ++ ++ K + L ++N+M+ G +AD
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG 416
+TY+ LI C DGK +D K+L M+ + P+ TF+ + K G + A +Y
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 417 KMKDLKCEPNTVTYNILMQMFATSKSTDXXXXXXXXXXXXXXXXXXXTYRILITMYCGMG 476
+M P+T+TYN L+ F TY ILI YC
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 399
Query: 477 HWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528
++ + RE I K L P + Y ++ ++G+L +EL ++MV RG
Sbjct: 400 RVDDGMRLFRE-ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRG 450
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LN22 | PPR54_ARATH | No assigned EC number | 0.7037 | 0.9943 | 0.9888 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 534 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-26
Identities = 81/330 (24%), Positives = 150/330 (45%), Gaps = 13/330 (3%)
Query: 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRM 209
LY +I+ K + D + M + VE V TF L+ RAG A+A A+ M
Sbjct: 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533
Query: 210 EEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFE-----PDVIVYTNLVRGWC 263
PD++ F+ +IS C ++ FD L + K E PD I L++
Sbjct: 534 RSKNVKPDRVVFNALISA-CG--QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 264 RAGNISEAERVFREMKMAGIQ--PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPN 321
AG + A+ V++ + I+ P VYT I +++ + G A ++ +M + G +P+
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
Query: 322 SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381
+ F+ L+ V A +K ++ ++ G + T++Y+ L+ + A+++
Sbjct: 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708
Query: 382 SMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441
+ P ST N + + + + A + +MK L PNT+TY+IL+
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768
Query: 442 STDMVLKLKKEMEENEVEPNVNTYRILITM 471
D+ L L + +E+ ++PN+ R + +
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 2e-21
Identities = 63/288 (21%), Positives = 123/288 (42%), Gaps = 9/288 (3%)
Query: 248 FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307
+ D +YT L+ ++G + VF EM AG++ NV+T+ +ID R GQ+ +A
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
Query: 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA-----DTITYNF 362
+ M +P+ + FN L+ ++ ++ V +MK E D IT
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK---AETHPIDPDHITVGA 584
Query: 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLK 422
L+ G+++ A +V + + + S+ GD + A +Y MK
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 423 CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAY 482
+P+ V ++ L+ + + D ++ ++ + ++ +Y L+ +W A
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704
Query: 483 KYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFT 530
+ + E I+ L+P S ++ L QL K E++ +M G
Sbjct: 705 E-LYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.4 bits (197), Expect = 1e-18
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 250 PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299
PDV+ Y L+ G+C+ G + EA ++F EMK GI+PNVYTYSI+ID LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 6e-15
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK 404
D +TYN LID +CK GK+E+A+K+ N M ++G PN T++++ + K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 6e-14
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCK 369
P+ +T+N L+ + K + E+ L+++N+MK+ G + + TY+ LID CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 285 PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK 334
P+V TY+ +ID C+ G++ A +F EM + G +PN T++ L+ K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-13
Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 44/298 (14%)
Query: 197 GLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKF-------- 248
G +A+ M+E D+ A+ + LC +RA E S S
Sbjct: 65 GQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 249 -------------------------EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI 283
E D+ + LV G+ +AG EA ++ M AG+
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 284 QPNVYTYSIVIDALCRCGQI---TRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK 340
+P+VYT+ V L CG I R +V A ++ G E + N L+ ++VK
Sbjct: 184 RPDVYTFPCV---LRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 341 VLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFR 400
V+++M R D I++N +I + ++G+ + +++ +M +P+ T +
Sbjct: 241 ARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEV 458
LGD M+G + + N L+QM+ + S K+ ME +
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 4e-13
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 425 PNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473
P+ VTYN L+ + + LKL EM++ ++PNV TY ILI C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 5e-13
Identities = 73/365 (20%), Positives = 136/365 (37%), Gaps = 86/365 (23%)
Query: 193 YVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS-------------------------- 226
Y + GL +A+ + ME+ +PD+I + V+S
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423
Query: 227 ---------ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFRE 277
+ + + +A F ++ +K DVI +T+++ G EA FR+
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 278 MKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337
M + ++PN T + A R G + ++ A +L G + N L+ ++V+ R
Sbjct: 481 MLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNM 397
+N E D +++N L+ + GK A+++ N MV G NP+ TF
Sbjct: 540 MNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594
Query: 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE 457
+ S+ G V + M++ +
Sbjct: 595 LLCACSRSGMVTQGLEYFHSMEE----------------------------------KYS 620
Query: 458 VEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKH 517
+ PN+ Y ++ + G AY +I +M + P +V+ +L R + +H
Sbjct: 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMP----ITPDPAVWGALLNACR----IHRH 672
Query: 518 EELVE 522
EL E
Sbjct: 673 VELGE 677
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 7e-13
Identities = 82/362 (22%), Positives = 143/362 (39%), Gaps = 32/362 (8%)
Query: 172 DLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231
D M RN+ ++ ++ V AG EA F M E G + F +++
Sbjct: 182 DEMPERNLA----SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML------ 231
Query: 232 RRASEA--------QSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI 283
RAS Q LK D V L+ + + G+I +A VF M
Sbjct: 232 -RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---- 286
Query: 284 QPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQ 343
+ ++ ++ G A ++ EM + G + TF+ ++R+ + + E Q
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 344 VYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403
+ + R G D + L+D + K G++EDA V + M RK N ++N +
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYG 402
Query: 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-VEPNV 462
G A M+ +M PN VT+ ++ S ++ ++ + M EN ++P
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVE 522
Y +I + G + AY IR KP +++ +L R L+ E
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIR----RAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518
Query: 523 KM 524
K+
Sbjct: 519 KL 520
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 8e-13
Identities = 84/403 (20%), Positives = 150/403 (37%), Gaps = 85/403 (21%)
Query: 193 YVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS---ILCRKRRASEAQSFFDSLKDKFE 249
Y G E + F M E PD + + VIS +L +R E + +K F
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY--VVKTGFA 320
Query: 250 PDVIVYTNLVRGWCRAGNISEAERVF-------------------------------REM 278
DV V +L++ + G+ EAE+VF M
Sbjct: 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 279 KMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITF----NNLMRVHVK 334
+ + P+ T + V+ A G + DV ++ E+ I++ N L+ ++ K
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDL----DVGVKLHELAERKGLISYVVVANALIEMYSK 436
Query: 335 ASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394
+K L+V++ + E D I++ +I + + +A+ M+ PN+ T
Sbjct: 437 CKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVT 491
Query: 395 FNMIFRCISKLGDV----------------------NGAHRMY---GKMKDL-----KCE 424
+++G + N +Y G+M E
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551
Query: 425 PNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGM---GHWNNA 481
+ V++NIL+ + M ++L M E+ V P+ T+ I++ C G
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF---ISLLCACSRSGMVTQG 608
Query: 482 YKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524
+Y M E+ + P Y V+ L RAG+L + + KM
Sbjct: 609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 86/459 (18%), Positives = 174/459 (37%), Gaps = 35/459 (7%)
Query: 72 RKNPNPSSNSN---------PSLNPDFTIPSLSLGFSQISTAHSISPSTVR--HVIEK-- 118
K P S + + P L P+ +S I S V IEK
Sbjct: 39 TKTPFSSISCSSVEQGLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLV 98
Query: 119 SCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN 178
+CG RH + L F + A F Y ++ ++ ++S
Sbjct: 99 ACG-RHR----EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 179 VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFS--IVISILCRKRRASE 236
E + ++ +V+ G+ +A F+ M P++ S +I L E
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYRE 207
Query: 237 AQSFFDSLKDKF-EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVID 295
A + F + + + + + ++R G+ +++ + G+ + + +ID
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 296 ALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA 355
+CG I A VF M E ++ +N+++ + +E+ L +Y +M+ G
Sbjct: 268 MYSKCGDIEDARCVFDGM----PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415
D T++ +I + LE A + ++R G + + SK G + A ++
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383
Query: 416 GKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGM 475
+M N +++N L+ + +++ + M V PN T+ +++
Sbjct: 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
Query: 476 GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQL 514
G ++ + M E +KP + Y +++ L R G L
Sbjct: 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 5e-12
Identities = 57/283 (20%), Positives = 118/283 (41%), Gaps = 41/283 (14%)
Query: 209 MEEYGCAPDK--IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 266
+E + P+K I+++ +I+ L R EA FF + +P+ + + R G
Sbjct: 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIG 503
Query: 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFN 326
+ + + + GI + + + ++D RCG++ A + F E + +++N
Sbjct: 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-----SHEKDVVSWN 558
Query: 327 NLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC-KDGKLEDAIKVLNSMVR 385
L+ +V + ++++N+M G D +T+ L+ C C + G + ++ +SM
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACSRSGMVTQGLEYFHSMEE 617
Query: 386 K-GCNPNASTFNMIFRCISKLGDVNGAHRMYGKM-------------------------- 418
K PN + + + + G + A+ KM
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677
Query: 419 ----KDLKCEPNTVTYNILM-QMFATSKSTDMVLKLKKEMEEN 456
+ +PN+V Y IL+ ++A + D V +++K M EN
Sbjct: 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 6e-11
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 5/199 (2%)
Query: 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIK 378
P TFN LM V + + L+V ++ G +AD Y LI K GK++ +
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493
Query: 379 VLNSMVRKGCNPNASTFN-MIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF 437
V + MV G N TF +I C ++ G V A YG M+ +P+ V +N L+
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGC-ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
Query: 438 ATSKSTDMVLKLKKEM--EENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLK 495
S + D + EM E + ++P+ T L+ G + A K + +MI E +K
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA-KEVYQMIHEYNIK 611
Query: 496 PGSSVYEMVLQQLRRAGQL 514
VY + + + G
Sbjct: 612 GTPEVYTIAVNSCSQKGDW 630
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 1e-09
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 352 GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384
G + D +TYN LID C+ G++++A+++L+ M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 55/271 (20%)
Query: 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNR 208
LY+EM + + QF TFSI++R + R L A A
Sbjct: 311 CLYYEMRDSGVSIDQF--------------------TFSIMIRIFSRLALLEHAKQAHAG 350
Query: 209 MEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268
+ G D +A + ++ + + R +A++ FD + K ++I + L+ G+ G
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NLISWNALIAGYGNHGRG 407
Query: 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV-GCEPNS----- 322
++A +F M G+ PN T+ V+ A G + ++F M E +P +
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467
Query: 323 -----------------------ITFNNLMRVHVKASRTEKVLQV--YNQMKRLGCEADT 357
N+ + A R K L++ K G +
Sbjct: 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527
Query: 358 I-TYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387
+ Y L++ + G+ +A KV+ ++ RKG
Sbjct: 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 9e-09
Identities = 50/212 (23%), Positives = 90/212 (42%), Gaps = 51/212 (24%)
Query: 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC---RKRRASEAQS 239
V +++IL+ YV G + AV FNRM E G PD++ F IS+LC R ++
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF---ISLLCACSRSGMVTQGLE 610
Query: 240 FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299
+F S+++K+ I PN+ Y+ V+D L R
Sbjct: 611 YFHSMEEKY---------------------------------SITPNLKHYACVVDLLGR 637
Query: 300 CGQITRAHDVFAEMLEVGCEPNSITFNNLM---RVHVKASRTEKVLQVYNQMKRLGCEAD 356
G++T A++ +M P+ + L+ R+H E Q ++ + +
Sbjct: 638 AGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL-----DPN 689
Query: 357 TITYNFLI-DCHCKDGKLEDAIKVLNSMVRKG 387
++ Y L+ + + GK ++ +V +M G
Sbjct: 690 SVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 1e-08
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 248 FEPDVIVYTNLVRGWCRAGNISEAERVFREMK 279
+PDV+ Y L+ G CRAG + EA + EM+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 282 GIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313
G++P+V TY+ +ID LCR G++ A ++ EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 6e-08
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA 392
+TYN LID CK G++E+A+++ M +G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-07
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 288 YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS 322
TY+ +ID LC+ G++ A ++F EM E G EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-07
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR 230
T++ L+ Y + G EA+ FN M++ G P+ +SI+I LC+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-07
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC 388
+TYN LI +CK GKLE+A+++ M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV 287
+ Y L+ G C+AG + EA +F+EMK GI+P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGI 283
+ Y +L+ G+C+AG + EA +F+EMK G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (110), Expect = 1e-05
Identities = 42/261 (16%), Positives = 93/261 (35%), Gaps = 6/261 (2%)
Query: 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE-VGCEPNSITF 325
++ A + E + + + L G++ A ++ E LE + +
Sbjct: 3 DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62
Query: 326 NNLMRVHVKASRTEKVLQVYNQMKRLGCEA-DTITYNFLIDCHCKDGKLEDAIKVLNSMV 384
L +K R E+ L++ + L L GK E+A+++L +
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 385 RKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL--KCEPNTVTYNILMQMFATSKS 442
+P+ + + + +LGD A +Y K +L + L +
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYE 502
+ L+L ++ + + + L +Y +G + A +Y + +E +
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALY 240
Query: 503 MVLQQLRRAGQLQKHEELVEK 523
+ L G+ ++ E +EK
Sbjct: 241 NLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 4e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 287 VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP 320
+ TY+ ++ AL + G A V EM G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 6e-05
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 323 ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT 357
+T+N L+ KA R E+ L+++ +MK G E D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 288 YTYSIVIDALCRCGQITRAHDVFAEMLEVGC 318
TY+ +I C+ G++ A ++F EM E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD 217
T++ L+ +AG EA+ F M+E G PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 4e-04
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 460 PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKC 493
P+V TY LI YC G A K EM +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI 34
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT 427
T+N + + K G V A ++ +MK+ EP+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 4e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 252 VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285
+ Y L+ +AG+ A V EMK +G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 9e-04
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR 195
+I+ K + + A + MK R ++ V T+SIL+ +
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 323 ITFNNLMRVHVKASRTEKVLQVYNQMKRLGC 353
+T+N+L+ + KA + E+ L+++ +MK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390
TYN L+ K G + A+ VL M G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP 216
++T++ L+ +AG A+ M+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV 462
VTYN L+ + + L+L KEM+E +EP+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.61 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.2 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.17 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.17 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.17 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.14 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.13 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.91 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.9 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.77 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.73 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.71 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.71 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.66 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.59 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.51 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.42 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.37 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.18 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.08 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.9 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.89 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.86 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.85 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.8 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.78 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.69 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.69 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.67 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.62 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.61 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.59 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.59 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.56 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.55 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.55 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.48 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.47 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.45 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.44 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.44 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.37 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.34 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.33 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.31 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.29 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.22 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.16 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.15 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.15 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.1 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.08 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.07 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.06 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.06 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.97 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.87 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.76 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.72 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.69 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.66 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.63 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.38 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.37 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.31 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.27 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.21 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.19 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.19 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.18 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.15 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.11 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.07 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.04 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.96 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.9 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.88 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.87 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.78 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.76 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.62 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.62 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.62 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.55 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.53 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.45 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.43 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.42 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.41 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.28 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.25 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.16 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.12 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.11 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.06 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.0 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.94 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.92 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.76 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.64 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.61 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.45 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.26 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.99 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.81 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.78 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.75 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.74 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.25 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.12 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.02 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.69 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.62 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.52 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.51 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.49 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.36 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.0 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.87 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.78 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.66 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.21 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.11 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.86 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.62 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.29 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.06 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.96 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.63 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.17 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.86 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 88.8 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.9 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.51 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.27 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.73 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 86.66 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.46 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.42 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.3 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.03 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 86.01 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.0 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.99 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.76 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.67 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 85.5 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.45 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 85.24 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.04 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 84.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 84.71 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 84.65 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.62 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.61 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.6 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 84.59 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.23 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.14 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.27 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.72 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 82.44 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 81.95 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.74 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 81.61 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.55 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.48 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.4 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.38 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.35 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.01 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-61 Score=509.14 Aligned_cols=414 Identities=20% Similarity=0.335 Sum_probs=393.9
Q ss_pred HHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 112 VRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVR 191 (534)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 191 (534)
+..++..+. ..+++..|+++|++|....-..++...++.++..|.+.|.+++|+.+++.|.. |+..+|+.++.
T Consensus 373 ~~~~y~~l~---r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~ 445 (1060)
T PLN03218 373 YIDAYNRLL---RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS 445 (1060)
T ss_pred HHHHHHHHH---HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 344444443 34578999999999997655667777888999999999999999999999975 78999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ++.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 9999999999999999999999999999999999999999999999999999975 688999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE--VGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 578999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 009470 349 KRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428 (534)
Q Consensus 349 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (534)
.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 429 TYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 429 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|+++|++|.+.+ +.||..+|+.++.+|
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCC
Q 009470 509 RRAGQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 509 ~~~g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
++.|++++|.+++++|.+.|+.|+.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=504.80 Aligned_cols=403 Identities=17% Similarity=0.306 Sum_probs=386.2
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVH 204 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 204 (534)
.+.+..|+.+|..+.. ++..+|+.++.+|++.|+++.|+++|++|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 419 ~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred CCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3458899999998763 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--C
Q 009470 205 AFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM--A 281 (534)
Q Consensus 205 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 281 (534)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ++.||..+|+.||.+|++.|++++|.++|++|.+ .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999975 6899999999999999999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 282 GIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 282 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (534)
.+|.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----c------
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR----A------ 511 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------ 511 (534)
++++|.+++++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.+ +.||..+|+.++..|.+ .
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~~y~ka~~l~~~ 812 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLRRFEKACALGEP 812 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999987 89999999999876532 1
Q ss_pred -------------CCHHHHHHHHHHHHHcCCCCCC
Q 009470 512 -------------GQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 512 -------------g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
+..++|..+|++|++.|+.|+.
T Consensus 813 v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 813 VVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred hhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 2346899999999999999974
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-56 Score=474.76 Aligned_cols=401 Identities=20% Similarity=0.284 Sum_probs=299.6
Q ss_pred CChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009470 107 ISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTF 186 (534)
Q Consensus 107 ~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 186 (534)
+++.++..++..|...+ .+..+..++..+.+. |+.++..+|+.++.+|++.|+++.|.++|++|.+ +|..+|
T Consensus 121 ~~~~t~~~ll~a~~~~~---~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~ 192 (697)
T PLN03081 121 LPASTYDALVEACIALK---SIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASW 192 (697)
T ss_pred CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeH
Confidence 44555556665554332 345566666665543 5666666666666666666666666666666653 345666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhc
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~ 265 (534)
+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+ ++.+|..+|++|+.+|++.
T Consensus 193 n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 666666666666666666666666666666666666666666666666666666665543 5667777788888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY 345 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (534)
|++++|.++|++|.+ +|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++
T Consensus 273 g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~ 348 (697)
T PLN03081 273 GDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAH 348 (697)
T ss_pred CCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHH
Confidence 888888888888753 5777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 009470 346 NQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP 425 (534)
Q Consensus 346 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (534)
..|.+.|+.+|..+|+.||.+|++.|++++|.++|++|.+ +|..+||.|+.+|++.|+.++|.++|++|.+.|+.|
T Consensus 349 ~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 349 AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8888888888888888888888888888888888888754 577788888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEE-NEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMV 504 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 504 (534)
|..||+.++.+|++.|.+++|.++|++|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~L 500 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAAL 500 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHH
Confidence 888888888888888888888888888865 578888888888888888888888888877665 257888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 009470 505 LQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 505 ~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+.+|...|+++.|.++++++.+.
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCC
Confidence 88888888888888888877643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=467.10 Aligned_cols=407 Identities=17% Similarity=0.291 Sum_probs=382.7
Q ss_pred CCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH
Q 009470 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDT 185 (534)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 185 (534)
.+++.+...++.... ..+.++.|.++|+.+.+ ++..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+
T Consensus 155 ~~~~~~~n~Li~~y~---k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 155 EPDQYMMNRVLLMHV---KCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred CcchHHHHHHHHHHh---cCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 455666666765544 34568999999998863 4778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
|+.++.+|++.|+.+.+.+++..+.+.|+.+|..+|+.++.+|++.|++++|.++|++|.. +|..+||+++.+|++.
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~ 303 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALH 303 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999975 5999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY 345 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (534)
|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++.+|++.|++++|.++|
T Consensus 304 g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCC
Q 009470 346 NQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD-LKCE 424 (534)
Q Consensus 346 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 424 (534)
++|. .+|..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.
T Consensus 384 ~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 384 DRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred HhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 9997 4789999999999999999999999999999999999999999999999999999999999999975 6999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-CHHHHHH
Q 009470 425 PNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP-GSSVYEM 503 (534)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~ 503 (534)
|+..+|+.++++|++.|++++|.+++++| ++.|+..+|+.++.+|+..|+++.|.++++++.+. .| +..+|..
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~---~p~~~~~y~~ 533 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM---GPEKLNNYVV 533 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC---CCCCCcchHH
Confidence 99999999999999999999999998776 57899999999999999999999999999999864 45 4678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 009470 504 VLQQLRRAGQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 504 l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
+++.|.+.|++++|.+++++|.++|+.+.|
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 999999999999999999999999998655
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-54 Score=467.80 Aligned_cols=315 Identities=17% Similarity=0.249 Sum_probs=218.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+.+..|+++|+.+.. ++..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|++.++++.+.++
T Consensus 135 g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~ 209 (857)
T PLN03077 135 GELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREV 209 (857)
T ss_pred CChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHH
Confidence 456677777777653 356678888888888888888888888888778888888877777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
+..|.+.|+.||..+++.++.+|++.|++++|.++|++|.. +|..+||+++.+|++.|++++|+++|++|.+.|+.|
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 77777777777777778888888888888888888888864 577888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
|..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.+|.
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~ 362 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMIS 362 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHH
Confidence 8777777777777777777777777777777777777777776666666666666666666654 345555666666
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+|++.|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666655555555555555555555555555555555555555554444444444444444444444
Q ss_pred HHHHHHH
Q 009470 446 VLKLKKE 452 (534)
Q Consensus 446 a~~l~~~ 452 (534)
|.++|++
T Consensus 443 A~~vf~~ 449 (857)
T PLN03077 443 ALEVFHN 449 (857)
T ss_pred HHHHHHh
Confidence 4444433
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=459.33 Aligned_cols=385 Identities=18% Similarity=0.251 Sum_probs=265.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF 206 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 206 (534)
+++.|..+|+.+.. ++..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.|.+++
T Consensus 237 ~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 237 DVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred CHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 34555555555432 2445566666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 207 NRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 207 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+||.++.+|++.|++++|+++|++|.+.|+.||
T Consensus 312 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 6666666666666666666666666666666666666653 4666677777777777777777777777766666667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 287 VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 287 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|..+|+.+|.+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~ 464 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAG 464 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHH
Confidence 6677666666666666666666666666666666666666666666666666666666666642 445556666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------------------
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC----------------------- 423 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----------------------- 423 (534)
|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 465 ~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 6666666666666666654 3556666665555544444444444444444333332
Q ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009470 424 -------EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP 496 (534)
Q Consensus 424 -------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 496 (534)
.+|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|.+..++.|
T Consensus 544 ~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 544 WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 4577788888888888899999999999999989999999999999999999999999999999986666889
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 497 GSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
+..+|+.++++|.+.|++++|.+++++|
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 9999999999999999999999998887
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-26 Score=250.60 Aligned_cols=386 Identities=12% Similarity=0.078 Sum_probs=231.6
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+++..|...|+.+.... +.+...+..+..++.+.|++++|..+++++.+.+ +.+...+..++..|.+.|++++|+++
T Consensus 513 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 34445555555544321 2234455555555555555555555555554443 23444555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
++++.+.. +.+...|..+...+...|++++|...|+++.+..+.+...+..++..+.+.|++++|..+++++.+.. +.
T Consensus 590 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 667 (899)
T TIGR02917 590 LNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PD 667 (899)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 55555432 33445555555555556666666666655554444455555555566666666666666665555432 12
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+++.+.+ |+..++..++.
T Consensus 668 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 34555555566666666666666666665554 3345555556666666666666666666666543 33355555666
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
++.+.|++++|.+.++++.+... .+...+..+...+...|+.++|.+.|+++.+.. +.+...++.+...+...|+ ++
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HH
Confidence 66666666666666666665532 355666666666667777777777777776654 3456666666777777776 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
|+..++++.+.. +-+..++..+...+...|++++|.++++++++.+ +.+..++..+..++.+.|+.++|.+++++|+
T Consensus 822 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 822 ALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA--PEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 777777666642 3345556667777777888888888888887765 3367777778888888888888888887775
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-25 Score=243.29 Aligned_cols=390 Identities=14% Similarity=0.145 Sum_probs=278.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+++.+|...|+.+.+.. +.+...+..+...+.+.|++++|.+.++.+.+.+ +.+..++..+...+.+.|++++|..+
T Consensus 479 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44556666666555432 2344455556666666666666666666666554 34556666666666667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
++++.+.+ +.+...+..++..+.+.|++++|.++++.+....+.+..+|..++..+.+.|++++|...|+++.+.+ +.
T Consensus 556 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 633 (899)
T TIGR02917 556 LEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PD 633 (899)
T ss_pred HHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 76665543 34455566667777777777777777777766666677777777777777777777777777776653 22
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
+...+..+...+.+.|++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 45566677777777777777777777777654 3456677777777777777777777777777665 456667777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
.+...|++++|.+.++++...+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 7888888888888888887764 344666777778888888888888888877654 3467777888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
|..+++++.+.. +.+...+..+...+...|+ .+|+.+++++.+.. +.+...+..+...+...|++++|.+.+++++
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA--PNIPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888764 5677778888888888888 77888888888753 3455667778888888999999999999998
Q ss_pred HcCC
Q 009470 526 DRGF 529 (534)
Q Consensus 526 ~~g~ 529 (534)
+.+.
T Consensus 865 ~~~~ 868 (899)
T TIGR02917 865 NIAP 868 (899)
T ss_pred hhCC
Confidence 8764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-22 Score=198.94 Aligned_cols=297 Identities=14% Similarity=0.178 Sum_probs=163.7
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN---VYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A 306 (534)
..|++++|...|+++....+.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444443333444445555555555555555555555444321111 12344445555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHHcCChHHHHHHHHH
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD----TITYNFLIDCHCKDGKLEDAIKVLNS 382 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (534)
.++|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...+++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555555432 23444555555555555555555555555554331111 11234455555666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 383 MVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV 462 (534)
Q Consensus 383 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 462 (534)
+.+... .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|+..|++++|...++++.+. .|+.
T Consensus 206 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 282 (389)
T PRK11788 206 ALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA 282 (389)
T ss_pred HHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 665431 2344555666666666666666666666665432222345566666777777777777777776664 3455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCC
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR---AGQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
..+..++..+.+.|++++|.++++++++. .|+...+..++..+.. .|+.+++..++++|.++++.|+|
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 55566666777777777777777776663 4666666666665553 34666777777777776666665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-21 Score=192.77 Aligned_cols=301 Identities=12% Similarity=0.072 Sum_probs=181.0
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 009470 156 NLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD---KIAFSIVISILCRKR 232 (534)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g 232 (534)
..+...|+++.|...|+++.+.+ +.+..++..+...+...|++++|+++++.+.+.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34556678888888888887765 34566777788888888888888888887776432111 234566667777777
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV----YTYSIVIDALCRCGQITRAHD 308 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~A~~ 308 (534)
++++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++++.+.+..+.. ..+..+...+.+.|++++|.+
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777776655556667777777777777777777777777665432211 123445555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC 388 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 388 (534)
.++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|+..|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 666666543 223445555566666666666666666666554311113345555566666666666666666655542
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 009470 389 NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT---SKSTDMVLKLKKEMEENEVEPNV 462 (534)
Q Consensus 389 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~l~~~m~~~~~~p~~ 462 (534)
|+...+..++..+.+.|++++|.++++++.+. .|+...++.++..++. .|+.+++..++++|.++++.|+.
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33344455555556666666666666555543 3555555555554443 33555566666655554444433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-20 Score=176.93 Aligned_cols=366 Identities=17% Similarity=0.215 Sum_probs=309.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI-VI 225 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll 225 (534)
-.++|..+..++-..|++++|+.+++.+.+.. +..++.|..+..++...|+.+.|.+.|....+. .|+.....+ +.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45689999999999999999999999999886 457889999999999999999999999998874 476654443 44
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 304 (534)
..+-..|++++|..-+.+..+..+--...|..|...+-..|+...|++.|++.... .|+ ...|-.|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 44556899999999988877766666788999999999999999999999999874 454 567888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD-TITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
+|+..|.+..... +.....+..+...|...|.+|.|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+++.
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 9999999887764 335677888888899999999999999999886 344 678999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 009470 384 VRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN-TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN- 461 (534)
Q Consensus 384 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~- 461 (534)
..... -.....+.+..++...|.+++|.++|....+.. |. ...++.|...|-+.|++++|+..+++... +.|+
T Consensus 347 L~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 347 LRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 88743 256788899999999999999999999988753 33 45688899999999999999999999887 4665
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 462 VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
...|+.+...|-..|+.+.|++.+.+++. +.|. .+.++.|...+...|+..+|.+-++..++..
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 46889999999999999999999999988 4455 4667889999999999999999999988753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-18 Score=182.21 Aligned_cols=400 Identities=11% Similarity=0.069 Sum_probs=285.2
Q ss_pred hhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 009470 118 KSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG 197 (534)
Q Consensus 118 ~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 197 (534)
.+..+...+.+..|+..|+.+... .+++..|..+..+|.+.|+++.|++.++...+.+ +.+...|..+..+|...|
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 333444556788888888888754 3456778888888888888888888888887765 456778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--------------------------C
Q 009470 198 LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEP--------------------------D 251 (534)
Q Consensus 198 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--------------------------~ 251 (534)
++++|+..|......+- .+......++..+........+...++.-....+. +
T Consensus 209 ~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 209 KYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 88888888876654321 12222222222211111112222222111000000 0
Q ss_pred H---HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 009470 252 V---IVYTNLVRG---WCRAGNISEAERVFREMKMAG-IQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSI 323 (534)
Q Consensus 252 ~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 323 (534)
. ..+..+... ....+++++|.+.|++..+.+ ..| ....|+.+...+...|++++|+..+++..+.. +.+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHH
Confidence 0 000011100 122367999999999998764 223 45678888888999999999999999998874 33466
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 403 (534)
.|..+...+...|++++|...|+++.+.. +.+..+|..+...+...|++++|...|++..+... .+...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHH
Confidence 88888899999999999999999998774 55678899999999999999999999999998753 35677888889999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhCCC
Q 009470 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVN------TYRILITMYCGMGH 477 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~------~~~~li~~~~~~g~ 477 (534)
+.|++++|+..+++..+.. +.+...|+.+...+...|++++|.+.+++..+..-..+.. .++..+..+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999998754 3367889999999999999999999999988753111111 11222223344799
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+++|.++++++++.. +.+...+..+...+.+.|++++|.+.+++..+..
T Consensus 524 ~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 524 FIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999999998853 2344568889999999999999999999987653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-19 Score=185.83 Aligned_cols=329 Identities=8% Similarity=0.007 Sum_probs=176.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
++..+.+.|++++|..+++...... +-+...+..++.+....|++++|++.|+++.+.. +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3344445566666666665555543 2334445555555555666666666666665532 2334455555555666666
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+++|...+++.....+.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 666666666655544555556666666666666666666666655443222 12222222 2355566666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHH----HHHHHHHHHHCCCC
Q 009470 314 LEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLED----AIKVLNSMVRKGCN 389 (534)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~ 389 (534)
.+....++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++ |...++++.+...
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P- 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS- 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-
Confidence 544322233333344455556666666666666655543 3345555555666666666554 5566666555432
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV-NTYRIL 468 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~~~~~l 468 (534)
.+...+..+...+.+.|++++|...+++..+... .+...+..+...+.+.|++++|...++.+.+. .|+. ..+..+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~ 358 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYA 358 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHH
Confidence 2445555666666666666666666666655432 23444555555666666666666666665553 2222 222233
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
..++...|++++|++.|+++++.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 44555666666666666666553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-18 Score=194.61 Aligned_cols=394 Identities=11% Similarity=0.049 Sum_probs=262.6
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CHHHH------------HHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEI-TVDTF------------SILVR 191 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~------------~~li~ 191 (534)
.+++.+|+..|+.+.+.. +.++..+..+..++.+.|++++|...|++..+..... ....| .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 456778888888887642 3467788888888888888888888888877654221 11112 12244
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.+.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|++.|+++....+.+...+..+...|. .++.++|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHH
Confidence 5677888888888888887753 3456677778888888888888888888877665666666655555543 2344555
Q ss_pred HHHHHHHHHCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 009470 272 ERVFREMKMAGIQ--------PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQ 343 (534)
Q Consensus 272 ~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 343 (534)
+.+++.+...... .....+..+...+...|++++|++.+++..+.. +-+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5554433211000 001123334445555666666666666665553 2234445555556666666666666
Q ss_pred HHHHHHHcCCCCChhhHHH--------------------------------------------HHHHHHHcCChHHHHHH
Q 009470 344 VYNQMKRLGCEADTITYNF--------------------------------------------LIDCHCKDGKLEDAIKV 379 (534)
Q Consensus 344 ~~~~~~~~g~~~~~~~~~~--------------------------------------------li~~~~~~g~~~~A~~~ 379 (534)
.++++.+.. +.+...+.. +...+...|+.++|.++
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 666655432 222222222 23445555666666665
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE 459 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 459 (534)
++. .+.+...+..+...+.+.|++++|++.|+++.+.. +.+...+..++..|...|++++|.+.++...+.. +
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 551 23455667788889999999999999999998875 3467888999999999999999999999887652 3
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCC
Q 009470 460 PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP----GSSVYEMVLQQLRRAGQLQKHEELVEKMVD-RGFTA 531 (534)
Q Consensus 460 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~g~~~ 531 (534)
.+...+..+..++...|++++|.+++++++....-.| +...+..+...+...|++++|.+.+++.+. .|+.|
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4556677788889999999999999999987542112 224566678888999999999999999864 34443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-18 Score=189.31 Aligned_cols=368 Identities=11% Similarity=0.017 Sum_probs=279.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHH----------
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP-DKIAF---------- 221 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~---------- 221 (534)
.....+...|++++|...|++..+.+ +.+...+..+...+.+.|++++|++.|++..+..-.. ....+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 34566778999999999999998875 4578899999999999999999999999998754211 11111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 009470 222 --SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299 (534)
Q Consensus 222 --~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (534)
......+.+.|++++|++.|+++....+.+...+..+...+...|++++|++.|+++.+... .+...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-
Confidence 12244677899999999999999888788889999999999999999999999999987632 24556666666664
Q ss_pred cCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 009470 300 CGQITRAHDVFAEMLEVGCE--------PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDG 371 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 371 (534)
.++.++|+.+++.+...... .....+..+...+...|++++|++.|++..+.. +.+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 56789999988765432100 012245566778889999999999999998875 446778888999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC------------------------------
Q 009470 372 KLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL------------------------------ 421 (534)
Q Consensus 372 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------------------------------ 421 (534)
++++|...++++.+.... +...+..+...+.+.|+.++|...++.+...
T Consensus 510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999999876422 3333333333334444444444444332110
Q ss_pred ---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 422 ---------KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 422 ---------~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
..+.+...+..+...+.+.|++++|++.+++..+.. +.+...+..++..+...|++++|++.++.+.+..
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 113455567778888999999999999999998864 5567888899999999999999999999888743
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 493 CLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 493 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+.+...+..+..++...|++++|.+++++++...
T Consensus 668 --p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 668 --NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred --CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 3345667778888899999999999999988753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-19 Score=182.79 Aligned_cols=360 Identities=9% Similarity=0.035 Sum_probs=286.0
Q ss_pred HccCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSR--NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASE 236 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 236 (534)
.+..+++..--+|....+. .-..+..-...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 3445555444444433222 001123345567788889999999999999998764 3345566666677788999999
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|.+.++++....|.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999998888899999999999999999999999999998753 225677888999999999999999999988776
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009470 317 GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFN 396 (534)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 396 (534)
... +...+..+ ..+...|++++|...++.+.+..-.++...+..+..++.+.|++++|...++++.+... .+...+.
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~ 250 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRR 250 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 432 33344333 34788999999999999988764334455556667889999999999999999998753 3677888
Q ss_pred HHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 397 MIFRCISKLGDVNG----AHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 397 ~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
.+...+...|++++ |...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 89999999999986 899999998865 3367889999999999999999999999999864 44566778888999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPGSS-VYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
.+.|++++|++.++++.+.. |+.. .+..+..++...|+.++|...++++.+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999854 5543 34445678899999999999999988763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-17 Score=173.34 Aligned_cols=360 Identities=11% Similarity=0.009 Sum_probs=262.7
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 123 RHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEA 202 (534)
Q Consensus 123 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 202 (534)
...+++..|+..++.+.+.. +.....+..+..++...|++++|...|..+...+...+ .....++..+........+
T Consensus 171 ~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~a~~~~ 247 (615)
T TIGR00990 171 NALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLKKFAESKA 247 (615)
T ss_pred HHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHH
Confidence 34467899999999998753 45677899999999999999999998877655532222 2222222222221111222
Q ss_pred HHHHHHHHHcCCCCCHH------------------------------HHHHHHHH---HHhcCCHHHHHHHHHHhhcc--
Q 009470 203 VHAFNRMEEYGCAPDKI------------------------------AFSIVISI---LCRKRRASEAQSFFDSLKDK-- 247 (534)
Q Consensus 203 ~~~~~~m~~~g~~~~~~------------------------------~~~~ll~~---~~~~g~~~~A~~~~~~~~~~-- 247 (534)
...++.-.. ..|... .+..+... ....+++++|.+.|++....
T Consensus 248 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~ 325 (615)
T TIGR00990 248 KEILETKPE--NLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK 325 (615)
T ss_pred HHHHhcCCC--CCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC
Confidence 222111000 000000 00000000 01236789999999987653
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 248 -FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 248 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
.+.....|+.+...+...|++++|+..+++..+... -....|..+...+...|++++|...++++.+.. +.+...|.
T Consensus 326 ~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 403 (615)
T TIGR00990 326 LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYY 403 (615)
T ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 244567889999999999999999999999987632 236678888999999999999999999998875 44678899
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG 406 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 406 (534)
.+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +-+...++.+...+...|
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 99999999999999999999999875 4567778888999999999999999999998864 335788999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTV------TYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 480 (534)
++++|.+.|++..+.....+.. .++..+..+...|++++|.+++++..+.. +.+...+..+...+.+.|++++
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999988754221111 12222233445799999999999988764 3445678889999999999999
Q ss_pred HHHHHHHHHHcC
Q 009470 481 AYKYIREMIEEK 492 (534)
Q Consensus 481 A~~~~~~~~~~~ 492 (534)
|+++|+++.+..
T Consensus 561 Ai~~~e~A~~l~ 572 (615)
T TIGR00990 561 ALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHh
Confidence 999999998853
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-17 Score=176.84 Aligned_cols=409 Identities=11% Similarity=0.058 Sum_probs=312.8
Q ss_pred CCCCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 009470 104 AHSISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITV 183 (534)
Q Consensus 104 ~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 183 (534)
...++|..|...+.... ..++..+|+..+..+... -+.+...+..+...+.+.|++++|..++++..+.. +.+.
T Consensus 10 ~~~~~~~~~~d~~~ia~---~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~ 83 (765)
T PRK10049 10 KSALSNNQIADWLQIAL---WAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQND 83 (765)
T ss_pred ccCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 34567777777665543 345678899888888752 23456679999999999999999999999988875 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++....|.+...+..++..+.
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888899999999999999999999998763 44556 8888889999999999999999999988889999889999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCHH-HH--
Q 009470 264 RAGNISEAERVFREMKMAGIQPNV------YTYSIVIDALC-----RCGQI---TRAHDVFAEMLEV-GCEPNSI-TF-- 325 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~-- 325 (534)
..|+.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+
T Consensus 162 ~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 162 NNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 99999999999986653 2221 11122222222 22334 7788899988864 2223221 11
Q ss_pred --HHHHHHHHHcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 009470 326 --NNLMRVHVKASRTEKVLQVYNQMKRLGCE-ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP---NASTFNMIF 399 (534)
Q Consensus 326 --~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~l~ 399 (534)
...+..+...|++++|+..|+++.+.+.. |+ .....+...|...|++++|...|+++.+..... .......+.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11134556789999999999999987632 22 222335778999999999999999988753221 134566677
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKC-----------EPN---TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTY 465 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~ 465 (534)
.++.+.|++++|.+.++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +-+...+
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~ 396 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLR 396 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 788999999999999999987531 123 2345667788899999999999999998863 6667888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 466 RILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
..+...+...|++++|++.++++++.. +.+...+...+..+.+.|++++|+.+++++++.
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999853 334566777778899999999999999999875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-18 Score=166.25 Aligned_cols=385 Identities=16% Similarity=0.118 Sum_probs=314.1
Q ss_pred ChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 009470 108 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS 187 (534)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 187 (534)
.|..-+..-.....++..+.+..|+..+..+.+.. +...+.|-.+..++...|+.+.|.+.|.+..+.+ +.......
T Consensus 112 ~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s 188 (966)
T KOG4626|consen 112 NPQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARS 188 (966)
T ss_pred cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhc
Confidence 34333333333344556678899999999998753 2356789999999999999999999999988875 22333444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN 267 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 267 (534)
.+...+-..|+.++|...|.+..+.. +--..+|..|...+-..|+.-.|++.|++...-.+.-...|-.|...|-..+.
T Consensus 189 ~lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 189 DLGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred chhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 55556666899999999998887743 22356788888889999999999999999887666667899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 268 ISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 268 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
+++|...|.+.... .|+ ...+..+...|...|.++-|+..|++.++.. +.-...|+.|..++-..|+..+|.+.|.
T Consensus 268 ~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 268 FDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred chHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 99999999998765 344 6678888888999999999999999999874 3347899999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 009470 347 QMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN 426 (534)
Q Consensus 347 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (534)
+..... +.-....+.|...|...|.+++|..+|....+-... -...++.+...|-+.|++++|+..|++..+. .|+
T Consensus 345 kaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~ 420 (966)
T KOG4626|consen 345 KALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPT 420 (966)
T ss_pred HHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--Cch
Confidence 998764 445678899999999999999999999998876321 3567899999999999999999999999875 455
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 009470 427 -TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS-SVYEM 503 (534)
Q Consensus 427 -~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~ 503 (534)
...|+.+...|-..|+++.|++.+.+.+.. .|. ...++.|...|-..|++.+|++-+++.++ ++||. ..|..
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk---lkPDfpdA~cN 495 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK---LKPDFPDAYCN 495 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc---cCCCCchhhhH
Confidence 568899999999999999999999999875 443 56788999999999999999999999998 45653 45666
Q ss_pred HHHHH
Q 009470 504 VLQQL 508 (534)
Q Consensus 504 l~~~~ 508 (534)
++.++
T Consensus 496 llh~l 500 (966)
T KOG4626|consen 496 LLHCL 500 (966)
T ss_pred HHHHH
Confidence 65554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-16 Score=170.64 Aligned_cols=375 Identities=13% Similarity=0.051 Sum_probs=287.8
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 144 FVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI 223 (534)
Q Consensus 144 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 223 (534)
.+.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.++|++..+.. +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 35677778888889999999999999999988743 4566789999999999999999999999988753 445677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQI 303 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 303 (534)
+...+...|+.++|+..++++....+.+.. +..+...+...|+.++|+..++++.+.... +...+..+...+...|..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 888999999999999999999888888888 999999999999999999999999986433 455666778888889999
Q ss_pred HHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----HcCCh---hHHHHHHHHHHHc-CCCCChh-hHH----HH
Q 009470 304 TRAHDVFAEMLEVGCEPNS------ITFNNLMRVHV-----KASRT---EKVLQVYNQMKRL-GCEADTI-TYN----FL 363 (534)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~~~~~-g~~~~~~-~~~----~l 363 (534)
++|++.++.... .|+. .....+++... ..+++ ++|++.++.+.+. ...|+.. .+. ..
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999998886654 2221 11122222222 22234 7788888888754 2223221 111 11
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHh
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRKGCN-PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP---NTVTYNILMQMFAT 439 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~ 439 (534)
+..+...|++++|...|+.+.+.+.. |+. ....+...+...|++++|+..|+++.+..... .......+..++.+
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 34556779999999999999987532 332 22335778999999999999999987653211 13456667778899
Q ss_pred cCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 440 SKSTDMVLKLKKEMEENE-----------VEPN---VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 440 ~g~~~~a~~l~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
.|++++|.++++.+.+.. -.|+ ...+..+...+...|++++|+++++++.... +.+...+..+.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--P~n~~l~~~lA 400 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--PGNQGLRIDYA 400 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 999999999999998752 1123 2345667778899999999999999999864 55677888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 009470 506 QQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 506 ~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
..+...|++++|++.++++++..
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999998753
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-15 Score=157.72 Aligned_cols=393 Identities=11% Similarity=0.073 Sum_probs=278.8
Q ss_pred CCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHS-PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
.+++..|+..|+.+.+..+ .+ +.++ .++.+++..|+.++|+..+++..... +........+...|...|++++|+
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred CCCHHHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4566788888888876432 22 2334 77778888888888888888877322 233444444566888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI 283 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 283 (534)
++|+++.+.. +-+...+..++..+...++.++|++.++++....+ +...+..++..+...++..+|++.++++.+.+.
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 8888888754 34456666777788888888888888888876543 344444444444445666668888888887642
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH------------------------------------------------HHHHHHHHHH
Q 009470 284 QPNVYTYSIVIDALCRCGQITR------------------------------------------------AHDVFAEMLE 315 (534)
Q Consensus 284 ~p~~~~~~~ll~~~~~~g~~~~------------------------------------------------A~~~~~~m~~ 315 (534)
. +...+..++..+.+.|-... |+.-++.+..
T Consensus 201 ~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 T-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred C-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 2 34444444444444443332 3333333332
Q ss_pred c-CCCCCH-HH----HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--
Q 009470 316 V-GCEPNS-IT----FNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG-- 387 (534)
Q Consensus 316 ~-~~~~~~-~~----~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 387 (534)
. +-.|.. .. ..-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+++++|..+++++....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 111321 11 223345778899999999999999998877677788999999999999999999999987653
Q ss_pred ---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------CCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 009470 388 ---CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC-------------EPNTV-TYNILMQMFATSKSTDMVLKLK 450 (534)
Q Consensus 388 ---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~li~~~~~~g~~~~a~~l~ 450 (534)
..++......|.-++...+++++|..+++++.+... .||-. .+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122444467889999999999999999999987321 12222 3345677788899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 451 KEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 451 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+++.... +-|......+...+...|.+.+|.+.++.+.... +-+..+....+..+...|++++|..+.+.+.+.
T Consensus 440 e~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~--P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 440 EDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA--PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC--CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9998764 7788899999999999999999999998777643 334566777888889999999999999887654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-14 Score=151.02 Aligned_cols=375 Identities=10% Similarity=0.058 Sum_probs=278.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
..+.+...-+-...+.|+++.|++.|++..+.+..-....+ .++..+...|+.++|+..+++.... .+.....+..+.
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA 109 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAA 109 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHH
Confidence 34555555666778999999999999999887632112233 8888889999999999999998721 122334444446
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
..+...|++++|+++|+++.+..+.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 68888999999999999999988889999999999999999999999999999875 4565566445444445667767
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH----------------------------------------
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY---------------------------------------- 345 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~---------------------------------------- 345 (534)
|++.++++.+.. +-+...+..++.++.+.|-...|.++.
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999999999885 335555566666665555443333332
Q ss_pred --------HHHHHc-CCCCCh-hhH----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009470 346 --------NQMKRL-GCEADT-ITY----NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGA 411 (534)
Q Consensus 346 --------~~~~~~-g~~~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 411 (534)
+.+... +-.|.. ..| .-.+.++...|++.++.+.++.+...+.+.-..+-..+..+|...++.++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 222221 111221 112 234456788899999999999999888665666888999999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCH-HHHHHHHHHH
Q 009470 412 HRMYGKMKDLK-----CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-------------VEPNV-NTYRILITMY 472 (534)
Q Consensus 412 ~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-------------~~p~~-~~~~~li~~~ 472 (534)
+.+|+.+.... ..++......|.-+|...+++++|..+++.+.+.. ..||- ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999986543 12234445778889999999999999999998731 11222 2344566778
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
...|+..+|.+.++++.... +-|......+.+.+...|++.+|++.++.+...
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a--P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA--PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 89999999999999998875 567888889999999999999999999776554
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-14 Score=130.80 Aligned_cols=397 Identities=13% Similarity=0.203 Sum_probs=287.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc--CChH-HHHHHHHHHHhCC-------------------CCCCHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKV--RQFD-LAWHFIDLMKSRN-------------------VEITVD 184 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~-~A~~~~~~m~~~~-------------------~~~~~~ 184 (534)
.+.++.-+++.+... +.+.++.+-..+++.-+-. .++. .-|+.|-.|...| .+-+..
T Consensus 130 EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e 208 (625)
T KOG4422|consen 130 EVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE 208 (625)
T ss_pred ccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence 455666777777744 6677777666655543322 2211 1223333333221 234567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~ 263 (534)
++..||.++++--..+.|.+++++-.....+.+..+||.+|.+-.-..+ .+++.+|.. +..||..|+|+++.+..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 9999999999999999999999999887779999999999987553322 566677654 68999999999999999
Q ss_pred hcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc----CCC----CCHHHHHHHHH
Q 009470 264 RAGNISE----AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR-AHDVFAEMLEV----GCE----PNSITFNNLMR 330 (534)
Q Consensus 264 ~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-A~~~~~~m~~~----~~~----~~~~~~~~li~ 330 (534)
+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++... .++ -|...|...+.
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 9998765 56788999999999999999999999999887644 44555554432 222 25666778888
Q ss_pred HHHHcCChhHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 331 VHVKASRTEKVLQVYNQMKRLG----CEAD---TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403 (534)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 403 (534)
.|.+..+.+-|.++..-+.... +.++ ..-|..+..+.|+....+.-...|+.|.-.-+-|+..+...++++..
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD 444 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence 8989999999988877665321 2232 23466788888999999999999999999888899999999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------HH-----HHHH-------HHHHHHCCCCCCH
Q 009470 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK-ST--------DM-----VLKL-------KKEMEENEVEPNV 462 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----a~~l-------~~~m~~~~~~p~~ 462 (534)
-.|.++-.-+++..++..|..-+...-.-++..+++.+ .. .. |..+ -.+|.+. ....
T Consensus 445 v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~ 522 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPA 522 (625)
T ss_pred hcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCCh
Confidence 99999999999999998875555555555555555544 11 10 1111 1223333 4455
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYE---MVLQQLRRAGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 530 (534)
...+.+.-.+.+.|++++|.++|....+++.--|.....+ .+++.-.+..+.-.|...++.|...++.
T Consensus 523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 6667777788999999999999999876654444444444 5666677889999999999999877654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-13 Score=146.86 Aligned_cols=218 Identities=8% Similarity=0.039 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 009470 301 GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVL 380 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (534)
|+.++|+..+.+.... .|+......+...+...|++++|...|+++... .++...+..+..++.+.|+.++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555566655555544 344433333444456778888888888876544 344445566677778888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP 460 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 460 (534)
++..+.+. .+...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|...+++..+.. +.
T Consensus 566 ~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 88877642 23333333344444568899999999888876 3567888888888999999999999999988864 55
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 461 NVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 461 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+...+..+..++...|++++|+..++++++.. +-+...+..+..++...|++++|+..+++.++..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66778888888999999999999999998854 3456778888889999999999999999988754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.6e-14 Score=129.79 Aligned_cols=373 Identities=15% Similarity=0.218 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HcCCHHH-HHHHHHHHHHcC------------
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYV--RAGLAAE-AVHAFNRMEEYG------------ 213 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~-A~~~~~~m~~~g------------ 213 (534)
++-|.++.+. ..|.+.++.-+|+.|...|++.+...-..|++.-+ ...++-- -.+.|-.|...|
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3455555544 56889999999999999999988877766665432 2222221 123344443332
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 214 -------CAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 214 -------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
.+.+..++..+|.++|+--..+.|.+++++-.. +.+.+..+||.+|.+-.-..+ .+++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 355678999999999999999999999998764 467789999999876543322 68899999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHH----cCCC--
Q 009470 286 NVYTYSIVIDALCRCGQITR----AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK-VLQVYNQMKR----LGCE-- 354 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~----~g~~-- 354 (534)
|..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++.. ..+.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 99999999999999998765 56788899999999999999999999999888754 4444444432 2222
Q ss_pred --CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 009470 355 --ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG----CNPN---ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP 425 (534)
Q Consensus 355 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (534)
.|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-+-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 245556777777888889998988877665431 1222 2345667778888889999999999998777788
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CH--------HH-----HHHHH------
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMG-HW--------NN-----AYKYI------ 485 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----A~~~~------ 485 (534)
+..+...++++..-.|.++-.-++|..++..|...+...-.-+...+|+.. +. .. |..++
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~ 511 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQ 511 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999886666666666666666654 11 11 11111
Q ss_pred -HHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 486 -REMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 486 -~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.++.+ ..-.....+..+-.+.+.|+.++|.+++..+.++|-
T Consensus 512 ~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 512 PIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 11221 123344567777788999999999999999977653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-13 Score=145.74 Aligned_cols=355 Identities=12% Similarity=0.098 Sum_probs=268.3
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC---H
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY--GCAPDKIAFSIVISILCRKRR---A 234 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~---~ 234 (534)
..+...++...++.|.+.. +-+.....-+.-...+.|+.++|.++|+..... +...+.....-++..|.+.+. .
T Consensus 354 ~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred ccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 3466777777777777663 335566666777778899999999999887652 112344445567777776655 2
Q ss_pred HHHHHH-------------------------HHHhhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 235 SEAQSF-------------------------FDSLKDKFEP--DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV 287 (534)
Q Consensus 235 ~~A~~~-------------------------~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 287 (534)
.++..+ +.......++ +...|..+..++.. ++.++|...+.+.... .|+.
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~ 509 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDA 509 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCch
Confidence 223222 2222222355 78889999988887 8999999988888765 3565
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009470 288 YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCH 367 (534)
Q Consensus 288 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 367 (534)
.....+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...+++..+.. +.+...+..+....
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 54444455557899999999999998665 4455556677888899999999999999998765 33333444444455
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
.+.|++++|...+++..+.. |+...+..+..++.+.|+.++|+..+++..+.. +.+...++.+...+...|+.++|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 56699999999999999874 578889999999999999999999999999876 336778888888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS-SVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
..+++..+.. +-+...+..+..++...|++++|+..++++++. .|+. .+.........+..+++.+.+-+++...
T Consensus 664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l---~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD---IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998863 556788999999999999999999999999984 4554 5566667777777888888887777655
Q ss_pred cC
Q 009470 527 RG 528 (534)
Q Consensus 527 ~g 528 (534)
.+
T Consensus 740 ~~ 741 (987)
T PRK09782 740 FS 741 (987)
T ss_pred cC
Confidence 43
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-14 Score=144.16 Aligned_cols=423 Identities=14% Similarity=0.134 Sum_probs=248.0
Q ss_pred hhhccccCCCCChHHHHHHHHhhh---cccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 009470 97 GFSQISTAHSISPSTVRHVIEKSC---GVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDL 173 (534)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 173 (534)
+...+..+.+++|..+..++...- .......+..++..+..+-.. ...+|.+.+.+...+.-.|+++.++.+...
T Consensus 218 a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 218 ALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 333444445667766665554431 112223344555555555442 235666777777777777777777777766
Q ss_pred HHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 174 MKSRNV--EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI--AFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 174 m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
+..... ..-...|--+.++|-..|++++|...|.+..+. .++.+ .+..+.+.+.+.|+++.+...|+.+....+
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 655421 112345666777777777777777777655543 23332 233456666677777777666666655555
Q ss_pred CCHHHHHHHHHHHHhcC----CHHHH---------------------------------HHHHHHHH----HCCCCCCHH
Q 009470 250 PDVIVYTNLVRGWCRAG----NISEA---------------------------------ERVFREMK----MAGIQPNVY 288 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g----~~~~A---------------------------------~~~~~~m~----~~g~~p~~~ 288 (534)
.+..+...|...|...+ ..+.| +.+|.... ..+..+...
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 55555555555444443 22333 33333222 223334455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hh
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEV---GCEPNS------ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD-TI 358 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~ 358 (534)
..|.+...+...|++++|...|...... ...++. .+-..+.+.+-..++.+.|.++|..+.+.. |. ..
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId 531 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYID 531 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHH
Confidence 5555666666667777777776665543 111222 122223444445555666666665555431 22 11
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------------------------------CCCCHHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKG-----------------------------------CNPNASTFNMIFRCIS 403 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------------------------------~~~~~~~~~~l~~~~~ 403 (534)
.|--++......+...+|...+++....+ ..+|......|.+.|.
T Consensus 532 ~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 532 AYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 12222211122234444544444443221 1133333344444332
Q ss_pred ------------hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 404 ------------KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 404 ------------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
..+..++|+++|.++.+... -|...-|.+.-.++..|++++|..+|.+..+.. .-...+|-.+.++
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~ 689 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHC 689 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHH
Confidence 23456778888888887653 377777888888889999999999999998864 3345678888899
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 472 YCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
|...|+|..|++.|+...++..-..+..+...|.+++.+.|++.+|.+.+...+..
T Consensus 690 ~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 690 YVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999998887755567788889999999999999999988877664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-13 Score=135.66 Aligned_cols=394 Identities=12% Similarity=0.121 Sum_probs=245.7
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKV---RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
....|+..|..+.+..+ -+..++-.|..+-... ..+..+..++...-..+ ..++...+.|...|.-.|+++.+.
T Consensus 214 ~~~~a~~a~~ralqLdp--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDP--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred chhhHHHHHHHHHhcCh--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHH
Confidence 34578888888876432 2233333333333333 34556666666665554 456789999999999999999999
Q ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 204 HAFNRMEEYGC--APDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPD-VIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 204 ~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
++...+..... ..-...|-.+.++|-..|++++|...|.+.....+.+ +..+.-+.+.|.+.|+++++...|+...+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k 370 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK 370 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH
Confidence 99998876432 1224568889999999999999999999877654444 55667789999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH----HHcC
Q 009470 281 AGIQPNVYTYSIVIDALCRCG----QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM----KRLG 352 (534)
Q Consensus 281 ~g~~p~~~~~~~ll~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~----~~~g 352 (534)
.. +-+..+..+|...|...+ ..++|..++.+..+.- +.|...|-.+...+....-+ .++..|... ...+
T Consensus 371 ~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 371 QL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKG 447 (1018)
T ss_pred hC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcC
Confidence 53 224566666666666554 4455666665555443 33555555555544433322 224444332 2334
Q ss_pred CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhc------------------
Q 009470 353 CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK---GCNPNA------STFNMIFRCISKL------------------ 405 (534)
Q Consensus 353 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~l~~~~~~~------------------ 405 (534)
-.+.....|.+...+...|++++|...|+..... ...++. .+-..+...+-..
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp 527 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP 527 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence 4455566666666666666666666666655443 111111 1111122222222
Q ss_pred ----------------CChhHHHHHHHHHHhCC-CCC----------------------------------CHHHHHHHH
Q 009470 406 ----------------GDVNGAHRMYGKMKDLK-CEP----------------------------------NTVTYNILM 434 (534)
Q Consensus 406 ----------------g~~~~A~~~~~~m~~~~-~~p----------------------------------~~~~~~~li 434 (534)
+...+|...++...+.. -.| |..+...|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 33444444444433211 111 222222222
Q ss_pred HHHH------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 009470 435 QMFA------------TSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYE 502 (534)
Q Consensus 435 ~~~~------------~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 502 (534)
..|. ..+..++|+++|.+..... +-|...-+.+...++..|++.+|..+|.+..+.. .....+|-
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~l 684 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWL 684 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceee
Confidence 2222 1234567777777777653 5566666777778888999999999999988864 34556788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 503 MVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 503 ~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.+.++|...|++-.|.++|+...+.-+
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999998877644
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-13 Score=134.24 Aligned_cols=285 Identities=11% Similarity=0.090 Sum_probs=174.9
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYS--IVIDALCRCGQITRAHD 308 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~A~~ 308 (534)
.|++++|++.+....+..+.....|........+.|+++.|.+.+.++.+. .|+...+. .....+...|++++|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 456666665555433321111222222233445666666666666666543 23322221 22445566666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHHcCChHHHHHHHH
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT-------ITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666554 334555566666666666666666666666665433211 122222333333344455555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 382 SMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN 461 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~ 461 (534)
.+.+. .+.+......+...+...|+.++|.+++++..+. .+|.... ++.+.+..++.+++.+..+...+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 55433 2346777778888888888888888888887763 3454322 2334445688888888888887763 555
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 462 VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
...+..+...|.+.|++++|.+.|+.+.+ ..|+...+..+...+.+.|+.++|.+.+++....
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66677888888888888888888888887 4688888888888888888888888888877654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-14 Score=131.28 Aligned_cols=389 Identities=17% Similarity=0.203 Sum_probs=182.0
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCCHHHHH
Q 009470 128 LLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEI----TVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 128 ~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 203 (534)
..+|+..++.+.+..-|+..-..--.+..++.+.+++.+|+++|+.....-... .+...+.+...+.+.|++++|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 345555555555443343333333344556667777788888776655442111 2344555556677788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-------------CCCCHHHHHH-----HHHHHHhc
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK-------------FEPDVIVYTN-----LVRGWCRA 265 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~~~~-----li~~~~~~ 265 (534)
..|+...+. .|+..+-..|+-++.-.|+.++..+.|.+|..- ..|+....+. .+.-+-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 888877664 366655444555555677777777777776421 1223222222 12222222
Q ss_pred CCHHHHHHHH---HHHHHCCCCCCHHH-------------HHH--------HHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 009470 266 GNISEAERVF---REMKMAGIQPNVYT-------------YSI--------VIDALCRCGQITRAHDVFAEMLEVGCEPN 321 (534)
Q Consensus 266 g~~~~A~~~~---~~m~~~g~~p~~~~-------------~~~--------ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 321 (534)
++ ..|++.+ -+++.--+.|+... +.- -...|.+.|+++.|++++.-+....-+.-
T Consensus 375 ~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~ 453 (840)
T KOG2003|consen 375 NK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA 453 (840)
T ss_pred hh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh
Confidence 11 1111111 11111111121100 000 01234556666666665555443321110
Q ss_pred HHHHHHH------------------------------------HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 322 SITFNNL------------------------------------MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 322 ~~~~~~l------------------------------------i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
...-+.+ .+.....|++++|.+.|++.....-.- ....-.+.-
T Consensus 454 saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfnigl 532 (840)
T KOG2003|consen 454 SAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGL 532 (840)
T ss_pred HHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcc
Confidence 0000000 001112345555555555555432111 111111222
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
.+-..|+.++|++.|-++...- .-+..+...+...|....+...|++++.+.... ++.|+....-|...|-+.|+-.+
T Consensus 533 t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 3445556666665555443221 124444555555555555555555555554332 23345555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL-RRAGQLQKHEELVEKM 524 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 524 (534)
|.+.+-+--.. ++-+..+...|...|....-+++|+.+|+++.- +.|+..-|..++..| .+.|++++|.++++..
T Consensus 611 afq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 611 AFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55544333322 344555555555555555555555555555443 455555555544332 4445555555555554
Q ss_pred HH
Q 009470 525 VD 526 (534)
Q Consensus 525 ~~ 526 (534)
.+
T Consensus 687 hr 688 (840)
T KOG2003|consen 687 HR 688 (840)
T ss_pred HH
Confidence 43
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-13 Score=133.93 Aligned_cols=289 Identities=10% Similarity=0.073 Sum_probs=160.4
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
..|+++.|.+.+.+..+..+.....+-.....+.+.|+.+.|.+.+.+..+....+.....-.....+...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555555443322223333444455555566666666665554432111111222234445555666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH-HHHHHHH---HHcCChHHHHHHHHHHHH
Q 009470 310 FAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITY-NFLIDCH---CKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 310 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~---~~~g~~~~A~~~~~~m~~ 385 (534)
++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+ ..-..++ ...+..+++.+.+..+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66665554 224445555555666666666666666666555432 22222 1111111 222233333334444444
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 386 KGC---NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVT---YNILMQMFATSKSTDMVLKLKKEMEENEVE 459 (534)
Q Consensus 386 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 459 (534)
... +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+.. +
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 321 1266667777777777777777777777777653 33221 1111122233466777777777776642 3
Q ss_pred CCH--HHHHHHHHHHHhCCCHHHHHHHHHH--HHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 460 PNV--NTYRILITMYCGMGHWNNAYKYIRE--MIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 460 p~~--~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
-|. .....+.+.+.+.|++++|.++|+. ..+ ..|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344 5666788888888888888888884 444 468888888888888888888888888887644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-12 Score=129.00 Aligned_cols=361 Identities=12% Similarity=0.129 Sum_probs=160.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFF 241 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 241 (534)
|++++|.+++.++.+.. +.....|..|...|-..|+.+++...+-..--.. +-|...|..+.....+.|.+++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 44444444444444443 2233444444444444444444444332222111 223344444444444444444444444
Q ss_pred HHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 242 DSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTY----SIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 242 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
.+..+..|++...+---+..|-+.|+...|..-|.++.....+.|..-+ -.++..|...++.+.|.+.++.....+
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 4444444444444444444444444444444444444443211111111 112233333344444444444433311
Q ss_pred -CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---------------------------CCCCChhhHHHHHHHHHH
Q 009470 318 -CEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL---------------------------GCEADTITYNFLIDCHCK 369 (534)
Q Consensus 318 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------------------g~~~~~~~~~~li~~~~~ 369 (534)
-..+...++.++..+.+...++.|......+... ++.++..+ --++-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 1122333444444444444444444444433331 01111111 112222333
Q ss_pred cCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 370 DGKLEDAIKVLNSMVRKG--CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 370 ~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
....+....+.....+.. +.-+...|.-+..++...|++.+|.++|..+......-+...|-.+..+|...|.+++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 333333333333333333 223344555566666666666666666666655443344555666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK-------CLKPGSSVYEMVLQQLRRAGQLQKHEEL 520 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 520 (534)
+.++...... +-+...--.|...+.+.|+.++|.+.+..+..-+ .+.|+........+.+...|+.++-...
T Consensus 470 e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 470 EFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6666665532 2233333444445556666666666665543111 1334444444455556666666665555
Q ss_pred HHHHHH
Q 009470 521 VEKMVD 526 (534)
Q Consensus 521 ~~~~~~ 526 (534)
...|+.
T Consensus 549 ~~~Lv~ 554 (895)
T KOG2076|consen 549 ASTLVD 554 (895)
T ss_pred HHHHHH
Confidence 555543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=129.57 Aligned_cols=290 Identities=10% Similarity=0.073 Sum_probs=137.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 009470 161 VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFS--IVISILCRKRRASEAQ 238 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~A~ 238 (534)
.|+++.|.+.+....+..-. ....|........+.|+++.|.+.+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 36666666555554433111 1122323333345666666666666666542 23332221 2244555666666666
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC 318 (534)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 318 (534)
+.++++.+..|.+...+..+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 6666666555556666666666666666666666666666655433111 111000
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMI 398 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 398 (534)
..+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|.+++++..+. .++.... +
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~ 300 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--L 300 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--H
Confidence 001112222222222333333333333221 1234444455555555555555555555555443 2222111 1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 009470 399 FRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHW 478 (534)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 478 (534)
+.+.+..++.+++.+..+...+.. +-|...+..+.+.+.+.|++++|.+.|+.+.+. .|+...+..+...+.+.|+.
T Consensus 301 l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 301 LIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCH
Confidence 222223355555555555554433 224444555555555555555555555555543 45555555555555555555
Q ss_pred HHHHHHHHHHH
Q 009470 479 NNAYKYIREMI 489 (534)
Q Consensus 479 ~~A~~~~~~~~ 489 (534)
++|.+++++..
T Consensus 378 ~~A~~~~~~~l 388 (398)
T PRK10747 378 EEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-12 Score=129.45 Aligned_cols=329 Identities=13% Similarity=0.136 Sum_probs=260.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
...-.|+.++|.+++.+..+.. +-....|.+|...|-..|+.+++...+-......|.|...|..+.....+.|+++.|
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3344599999999999998864 567889999999999999999999988887777788999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCChhHHHHHHHH
Q 009470 272 ERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSI----TFNNLMRVHVKASRTEKVLQVYNQ 347 (534)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~ 347 (534)
.-.|.+.++... ++...+---+..|-+.|+...|.+-|.++.+...+.|.. ..-.+++.+...++-+.|.+.++.
T Consensus 227 ~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999998743 355555566778899999999999999999875322322 233345667778888999998887
Q ss_pred HHHc-CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHHHH
Q 009470 348 MKRL-GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC---------------------------NPNASTFNMIF 399 (534)
Q Consensus 348 ~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~~~~~~~~~l~ 399 (534)
.... +-..+...++.++..+.+...++.|......+..... .++..+ ..++
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence 7652 2355677889999999999999999999888876211 122222 2334
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLK--CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
-++...+..+....+.....+.. +.-+...|.-+..+|...|++.+|+.++..+......-+...|..+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 44556666666666666665554 3445678889999999999999999999999987656677899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
+++|++.++.++... +.+...--.|...+.+.|+.++|.+.++.+.
T Consensus 465 ~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999964 3344556678888999999999999998865
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-12 Score=129.64 Aligned_cols=132 Identities=9% Similarity=-0.020 Sum_probs=71.5
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHH
Q 009470 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST---FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT--VTY 430 (534)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 430 (534)
+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.+++..+.. +-|. ...
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHH
Confidence 45555555556666666666666666655542 22211 0111111223355566666666655442 1133 344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 431 NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 431 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566666666777777777666433333356666666666666777777777766666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=145.29 Aligned_cols=262 Identities=15% Similarity=0.208 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAG-IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA 335 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 335 (534)
.+...+.+.|++++|++++++..... ..-|..-|..+.......|++++|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 34555666666666666664443332 122333334444445556666666666666665542 244455555555 566
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG-CNPNASTFNMIFRCISKLGDVNGAHRM 414 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 414 (534)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655443 2444555566666666777777777776665432 234556666677777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCL 494 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 494 (534)
+++..+... -|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|++++|+.++++..+..
T Consensus 169 ~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-- 244 (280)
T PF13429_consen 169 YRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-- 244 (280)
T ss_dssp HHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc--
Confidence 777766531 246666677777777777777777776666542 4455566677777777777777777777777653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 495 KPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 495 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
+.|+.+...+.+++...|+.++|.++..++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 44666667777777777777777777666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=140.21 Aligned_cols=261 Identities=12% Similarity=0.153 Sum_probs=98.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRN-VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 231 (534)
.+..++.+.|++++|+++++...... .+.+...|..+.......|+++.|++.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 45777778888888888885544333 244566677777777778888888888888876552 345566666666 677
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 232 RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG-IQPNVYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 232 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
+++++|.++++..-+.. ++...+..++..+.+.++++++.++++++.... ...+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888877654432 456667777778888888888888888876532 3446667777777888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009470 311 AEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390 (534)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 390 (534)
++..+.. +-|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 8887764 2256667777778888888888777777776654 4556667777888888888888888888877754 23
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
|..+...+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 67777777788888888888887777654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-12 Score=113.14 Aligned_cols=289 Identities=13% Similarity=0.204 Sum_probs=172.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC----CCHHHHHHHHHHHHhcCCHHHH
Q 009470 196 AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE----PDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 271 (534)
.++.++|+++|-+|.+.. +-+..+--+|.+.|-+.|..+.|+.+...+.+.-. .-..+.-.|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 455666666666666532 22333444555666666666666666666554311 1123344566667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHH
Q 009470 272 ERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS----ITFNNLMRVHVKASRTEKVLQVYNQ 347 (534)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~ 347 (534)
+++|..+.+.|.. -......|+..|-...+|++|++.-+++...+-.+.. ..|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7777777664322 3445666777777777777777777777766544331 2344455555556677777777777
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 009470 348 MKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT 427 (534)
Q Consensus 348 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (534)
..+.+ +..+..--.+.+.+...|++++|.+.++...+.+..--..+...+..+|.+.|+.++...++.++.+.. +..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence 76653 233334444556677777777777777777776555455666777777777777777777777776653 233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC---GMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~ 491 (534)
..-..+.+.-....-.+.|...+.+-... .|+...+..++..-. ..|...+-+..++.|+.+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 33334444434444445555555444443 677777777776443 234566666666666653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-10 Score=110.79 Aligned_cols=349 Identities=10% Similarity=0.090 Sum_probs=213.9
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 128 LLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDL----MKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 128 ~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
++.|..+.+.+.+ .++-++..|-....+--.+|+.+....++++ +...|+..+...|-.=...|-..|..-.+.
T Consensus 422 YenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 4455556666554 3566777887777777888888888887764 445688888888888888888888888888
Q ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 204 HAFNRMEEYGCAPD--KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 204 ~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
.+.......|+.-. ..||..-.+.|.+.+.++-|..+|....+-++.+...|...+..--..|..++...++++....
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888777776432 4577777778888888888888888777777777777777777666777777777777777664
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 282 GIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 282 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
++-....|-.....+-..|++..|..++....+.. +-+...|-..+.......++++|..+|.+.... .++..+|.
T Consensus 580 -~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~m 655 (913)
T KOG0495|consen 580 -CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWM 655 (913)
T ss_pred -CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhH
Confidence 23344555555666666777777777777776664 235666666667777777777777777766654 35555555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (534)
--+...--.+..++|.+++++..+. ++--...|..+.+.+-+.++++.|.+.|..-.+. ++-....|-.|.+.=-+.|
T Consensus 656 Ks~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 656 KSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence 5555555566666676666666554 1112334444555555555555555444433221 1112223333333333334
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
.+-.|..+++...-++ +-+...|...|+.=.+.|+.+.|..++
T Consensus 734 ~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 734 QLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred chhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444433332 223333444444444444444443333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-10 Score=107.96 Aligned_cols=391 Identities=15% Similarity=0.165 Sum_probs=285.9
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+++.+|..+|+.++... ..+..+|-.-++.-.+++.+..|..++++....-...| ..|-..+..=-..|+...|.++
T Consensus 87 ~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHHHHH
Confidence 45778889999888643 33556788888999999999999999999887632222 4565666666678999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA-GI- 283 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~- 283 (534)
|++-.+ ..|+...|.+.|+.=.+.+..+.|..++++..- +.|++.+|--.++.-.+.|++..|..+|+...+. |-
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 998776 579999999999999999999999999998764 3489999999999999999999999999887653 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------------------------HcCCC
Q 009470 284 QPNVYTYSIVIDALCRCGQITRAHDVFAEML--------------------------------------------EVGCE 319 (534)
Q Consensus 284 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--------------------------------------------~~~~~ 319 (534)
.-+...+.+....=.++..++.|.-+|.-.+ ..+ +
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p 319 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence 0112222222222222333333333333222 121 3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHH-----HH---HHcCChHHHHHHHHHHHHCCCC
Q 009470 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT--ITYNFLID-----CH---CKDGKLEDAIKVLNSMVRKGCN 389 (534)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~--~~~~~li~-----~~---~~~g~~~~A~~~~~~m~~~~~~ 389 (534)
-|-.+|-..++.-...|+.+...++|++....- +|-. ..|.-.|. ++ ....+++.+.++++...+. ++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cC
Confidence 355666667777777888888888888887652 3311 11222221 11 3467888888888888874 33
Q ss_pred CCHHHHHHHH----HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009470 390 PNASTFNMIF----RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTY 465 (534)
Q Consensus 390 ~~~~~~~~l~----~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~ 465 (534)
-...||..+- ....++.++..|.+++...+ |..|-..++...|..=.+.+++|.+..+++...+-+ +-+..+|
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W 474 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAW 474 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHH
Confidence 3445554443 33456788999999998876 457889999999999999999999999999999975 6677888
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 466 RILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 466 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
......=...|+.+.|..+|.-++....+......|...|+.=...|.+++|..+++++++..
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 888888888999999999999999866454555678888888889999999999999998753
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-10 Score=110.82 Aligned_cols=362 Identities=11% Similarity=0.104 Sum_probs=211.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
+|..-.+.|.+.+-++-|+.+|....+-. +.+...|...+..=-..|..+....+|++.... ++-....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHH
Confidence 44444555555555555555555544432 334455555555555556666666666665543 2333344444445555
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
..|+...|..++...-+..+.+..+|-.-+.....+..+++|..+|.+.... .|+...|..-+..---.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 5566666666666655555555666666666666666666666666665543 34444554444444455666666666
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 009470 310 FAEMLEVGCEPN-SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC 388 (534)
Q Consensus 310 ~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 388 (534)
+++.++. .|+ ...|-.+...+-+.++++.|.+.|..-.+. ++.....|-.|...--+.|.+-.|..++++..-++.
T Consensus 674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 6665554 233 334444555566666666666665544432 233344455555555556666666666666665543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 389 NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRIL 468 (534)
Q Consensus 389 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~l 468 (534)
. +...|...++.-.+.|..+.|..++.+..+. ++-+...|..-|...-+.++-......+ .+ ..-|......+
T Consensus 751 k-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---kk--ce~dphVllai 823 (913)
T KOG0495|consen 751 K-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KK--CEHDPHVLLAI 823 (913)
T ss_pred C-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---Hh--ccCCchhHHHH
Confidence 3 5556666666666666666666666655542 3334455555555554444433333222 22 24466666777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
...+....++++|.+.|.+.++.+ +.+..+|.-+...+.+.|.-++-.+++.+....
T Consensus 824 a~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 824 AKLFWSEKKIEKAREWFERAVKKD--PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC--CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 777888889999999999999865 345677888888889999888888888877653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-12 Score=111.02 Aligned_cols=290 Identities=14% Similarity=0.192 Sum_probs=229.0
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN------VYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~g~~~ 304 (534)
.++.++|.+.|-+|.+..+.+..+--+|.+.|-+.|..|.|+++.+.+.++ || ......|..-|...|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 568899999999998876777778888999999999999999999999875 34 233456677888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHcCChHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADT----ITYNFLIDCHCKDGKLEDAIKVL 380 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~ 380 (534)
.|+.+|..+.+.| .--.....-++..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+++.|..++
T Consensus 125 RAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999865 334567788999999999999999999999887644332 34566666677788999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP 460 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 460 (534)
.+..+.+.+ .+..-..+.+.....|++++|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+. .+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NT 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cC
Confidence 999987543 455566678889999999999999999998865555677889999999999999999999999886 33
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCC
Q 009470 461 NVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR---AGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 461 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~ 530 (534)
+...-..+...-....-.+.|..++.+-+.+ +|+...+..+++.-.. .|...+-..+++.|+..-++
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 4444445555444455567787877777774 6999999999986533 35677777778888765443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-11 Score=114.13 Aligned_cols=377 Identities=11% Similarity=0.121 Sum_probs=255.1
Q ss_pred ChHHHHHHHHHHHhCC-CCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 127 PLLQVLSFFNWVTARP-EFVHS--PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~-~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
.+..|+.|+..++.+- .+..+ ....+.+...+.+.|++++|+.-|+.+.+.. |+..+-..|+-++.--|+.++..
T Consensus 252 ~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmk 329 (840)
T KOG2003|consen 252 EFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMK 329 (840)
T ss_pred hHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHH
Confidence 4678899998887542 11111 1245666667789999999999999988764 45444444445555678999999
Q ss_pred HHHHHHHHcCCCC------------CHHHHHHHHH-----HHHhcC--CHHHHHHHHHHhhc-cCCCCHHH---------
Q 009470 204 HAFNRMEEYGCAP------------DKIAFSIVIS-----ILCRKR--RASEAQSFFDSLKD-KFEPDVIV--------- 254 (534)
Q Consensus 204 ~~~~~m~~~g~~~------------~~~~~~~ll~-----~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~--------- 254 (534)
+.|.+|......+ +....+..+. ..-+.+ +.++++-.--++.. -+.|+-..
T Consensus 330 eaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l 409 (840)
T KOG2003|consen 330 EAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL 409 (840)
T ss_pred HHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH
Confidence 9999997643322 3333333322 111111 12222221112111 11222110
Q ss_pred ----H--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----------------------------
Q 009470 255 ----Y--------TNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVI---------------------------- 294 (534)
Q Consensus 255 ----~--------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll---------------------------- 294 (534)
+ -.-...|.+.|+++.|.++++-+.+..-+.-...-+.|.
T Consensus 410 k~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn 489 (840)
T KOG2003|consen 410 KASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYN 489 (840)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccC
Confidence 0 112345788999999999888776542221111111110
Q ss_pred --------HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 295 --------DALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 295 --------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
......|++++|.+.|++.......-....|| +.-.+-..|+.++|++.|-++... +..+..+...+.+.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qiani 567 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANI 567 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Confidence 00112578999999999998664221222232 333567899999999999887643 23567778888899
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
|-...+..+|.+++.+.... ++.|+.+...+...|-+.|+-..|.+.+-+--+ -++-+..+...|...|....-++++
T Consensus 568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999887765 456889999999999999999999987765443 2456888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMY-CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQ 513 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 513 (534)
+..|++..- +.|+..-|..+|..| .+.|++.+|.+++++.-.+ ++.|.....-|++.+...|-
T Consensus 646 i~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 646 INYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhccccc
Confidence 999998765 589999999998855 5689999999999999886 57788888888888876663
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.5e-11 Score=110.53 Aligned_cols=330 Identities=13% Similarity=0.103 Sum_probs=235.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHH--HHH
Q 009470 180 EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIV--YTN 257 (534)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~ 257 (534)
..|...+-.....+.+.|....|++.|...... -+..|...+...--.-+.+ ....+..+.+.|... --.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e----~~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIE----ILSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHH----HHHHHHhcCcccchHHHHHH
Confidence 334444444445556667777777777666542 1122333222221122222 222222222222111 123
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHc
Q 009470 258 LVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCE--PNSITFNNLMRVHVKA 335 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~ 335 (534)
+..++-...+.+++.+-.+.....|+.-+...-+....+.....++++|+.+|+++.+...- -|..+|..++-+ +.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hh
Confidence 44566666788888888888888887766666666667777889999999999999987411 256777766633 32
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
.+..-+. +-......+ +-.+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-|
T Consensus 311 ~~skLs~-LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLSY-LAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHHH-HHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2222111 111111111 445678888889999999999999999999998643 5678899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 009470 416 GKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLK 495 (534)
Q Consensus 416 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 495 (534)
++..+.. +-|...|-.|.++|.-.+...=|+-.|++..+.. +.|...|.+|..+|.+.++.++|++.|+.++.-+ .
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--d 463 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--D 463 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--c
Confidence 9999876 4589999999999999999999999999998864 6788999999999999999999999999999876 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 496 PGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 496 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
.+...+..|.+.+.+.++.++|...+++-++
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4667899999999999999999999988776
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-12 Score=128.00 Aligned_cols=283 Identities=13% Similarity=0.093 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 198 LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKF---EPDVIVYTNLVRGWCRAGNISEAERV 274 (534)
Q Consensus 198 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (534)
+..+|+..|+++.+. +.-...+...+..+|...+++++|+++|+.+.... ..+..+|.+.+-.+-+.=... -+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls---~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS---YL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH---HH
Confidence 455666666664443 22233555666667777777777777777665431 234555655544332221111 11
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009470 275 FREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE 354 (534)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 354 (534)
-+++.+.. +-...+|.++.++|.-+++.+.|++.|++.++.+ +....+|+.+..-+....++|.|...|+...... +
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 12222211 2245667777777777777777777777766653 2256666666666666666777777776665321 1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009470 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM 434 (534)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (534)
-+...|.-+.-.|.+.++++.|+-.|+.+.+.+.. +.+....+...+-+.|+.|+|+++++++...... |+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 12223333455566777777777777766665432 4555556666666667777777777766655433 333333344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|--|.+
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 4455566777777777776664 233445566666666677777777666666665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-13 Score=128.07 Aligned_cols=287 Identities=14% Similarity=0.132 Sum_probs=225.6
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG--IQPNVYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
+..+|...|+++.+...-+..+...+.++|...+++++|+++|+.+.+.. ..-+...|.+.+..+-+.- +---+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHHH
Confidence 56789999999877777777888899999999999999999999998753 1225677887775443321 111223
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009470 311 AEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390 (534)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 390 (534)
+++.... +-.+.+|.++.++|.-.++.+.|++.|++..+.+ +-...+|+.+..-+....++|.|...|+.......+
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 3344433 4568899999999999999999999999999864 337889999999999999999999999998875322
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+-..|..+...|.+.++++.|+-.|+++.+.+. -+.+....+...+-+.|+.|+|+.+++++.... +-|...--..+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHH
Confidence 334455567789999999999999999998763 367777888888999999999999999998765 334444445566
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 471 MYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.+...+++++|++.++++.+. .+.+..+|..+...|.+.|+.+.|..-|.-+.+..-
T Consensus 566 il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 778889999999999999884 333456677888999999999999988888776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-11 Score=110.41 Aligned_cols=293 Identities=12% Similarity=0.123 Sum_probs=159.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 196 AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERV 274 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (534)
.|+|.+|.++..+-.+.+- -....|.....+.-..|+.+.+-.++.++.+. ..++...+-+..+.....|++..|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4666666666666555442 22333444445555556666666666555443 233444555555555556666666655
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 009470 275 FREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE 354 (534)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~ 354 (534)
++++.+.+.. +.........+|.+.|++.+...++..|.+.|.--+...-.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 5555554332 33444555555666666666666666655555333221100
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009470 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM 434 (534)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (534)
....+|..+++-....+..+.-...+++...+ .+-++..-..++.-+.++|+.++|.++.++..+.+..|. .. ..
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~ 301 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RL 301 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HH
Confidence 00112333333333333333333333333322 223455555666666677777777777776666554433 11 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQL 514 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 514 (534)
-.+.+-++.+.-++..++-.+. .+-+...+.+|...|.+.+.|.+|.+.|+..++ ..|+..+|..+.+++.+.|+.
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCCh
Confidence 2334556665555555554443 233446677777777777777777777777766 457777777777777777777
Q ss_pred HHHHHHHHHHHHc
Q 009470 515 QKHEELVEKMVDR 527 (534)
Q Consensus 515 ~~a~~~~~~~~~~ 527 (534)
++|.++.++....
T Consensus 378 ~~A~~~r~e~L~~ 390 (400)
T COG3071 378 EEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-10 Score=109.32 Aligned_cols=388 Identities=13% Similarity=0.119 Sum_probs=251.1
Q ss_pred CCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHS-PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
.+.+++|+.+++|+++. .|+ +..|......|...|+|+...+.--+..+.+ +--+..+..-..++-..|++.+|+
T Consensus 128 ~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred cccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHHHH
Confidence 45789999999999964 345 7788999999999999999988887777765 223566777777888888888887
Q ss_pred HHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH---------------------
Q 009470 204 HAFNRME-EYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG--------------------- 261 (534)
Q Consensus 204 ~~~~~m~-~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~--------------------- 261 (534)
.-..-.- -.|+ .+..+--.+=+.+-+.+ ..++.+-+..=....-|......+....
T Consensus 204 ~D~tv~ci~~~F-~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 204 FDVTVLCILEGF-QNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred HhhhHHHHhhhc-ccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH
Confidence 5433221 1111 11111111111111111 1112211110000011222221111111
Q ss_pred --HH--hcC---CHHHHHHHHHHHHHC---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 009470 262 --WC--RAG---NISEAERVFREMKMA---GIQPN---------VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS 322 (534)
Q Consensus 262 --~~--~~g---~~~~A~~~~~~m~~~---g~~p~---------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 322 (534)
+- ..+ .+..|...+.+-... ....+ ..+.......+.-.|+...|..-|+..+..... +.
T Consensus 282 ~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~-~~ 360 (606)
T KOG0547|consen 282 EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPA-FN 360 (606)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcc-cc
Confidence 11 011 233333333222111 00111 112222223344568888999999999887533 33
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 323 ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCI 402 (534)
Q Consensus 323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 402 (534)
..|..+...|....+.++..+.|.+..+.+ +.|..+|..-.+.+.-.+++++|..-|++.+..... +...|..+..+.
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCAL 438 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHH
Confidence 337777888999999999999999998876 667888888888888899999999999999887533 566777777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHH--HHHHHHHHhC
Q 009470 403 SKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-----VEPNVNTY--RILITMYCGM 475 (534)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-----~~p~~~~~--~~li~~~~~~ 475 (534)
.+.++++++...|++.++. ++--+..|+...+.+...++++.|.+.|+..++.. +..+...+ -.++ .+.-.
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk 516 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchh
Confidence 8889999999999999875 34467889999999999999999999999887742 11122221 1111 22245
Q ss_pred CCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 476 GHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 476 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
+++..|.++++++++. .|. ...|..|.....+.|+.++|.++|++...
T Consensus 517 ~d~~~a~~Ll~KA~e~---Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 EDINQAENLLRKAIEL---DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHHcc---CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8999999999999984 453 45688899999999999999999998654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-10 Score=107.71 Aligned_cols=288 Identities=14% Similarity=0.131 Sum_probs=175.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHhcCCHH
Q 009470 193 YVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE---PDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 269 (534)
+-...+.+++++-.+.....|++-....-+....+.-...++++|+.+|+++....| .|..+|..++..--...++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 334445556666666666666544444444444445556677777777777665422 24455555443322211111
Q ss_pred -HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 270 -EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 270 -~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
-|..++. . . +--..|+.++.+.|.-.++.++|...|++..+.+ +-....|+.|..-|....+...|.+-|+..
T Consensus 317 ~LA~~v~~-i--d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 317 YLAQNVSN-I--D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHH-h--c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 1111111 1 1 1123455566667777777778888887777765 335566777777777777777888877777
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 009470 349 KRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428 (534)
Q Consensus 349 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (534)
++.. +.|...|-.|.++|.-.+...=|+-.|++..+... -|...|.+|..+|.+.++.++|++.|.+....|- .+..
T Consensus 391 vdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~ 467 (559)
T KOG1155|consen 391 VDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGS 467 (559)
T ss_pred HhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchH
Confidence 7664 56777777777888777777777777777776642 3677777778888888888888888877776652 3556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 429 TYNILMQMFATSKSTDMVLKLKKEMEE----NEVEPN--VNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 429 ~~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
.+..|.+.|-+.++.++|...+++..+ .|...+ ...-.-|..-+.+.+++++|..+.....
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 777777777777777777777766544 222212 1111223444556666766655544443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-10 Score=107.08 Aligned_cols=295 Identities=10% Similarity=0.052 Sum_probs=188.9
Q ss_pred HHHHHHHHH--ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 151 YHEMINLAG--KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 151 ~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
-..+.+++. -.|+|.+|.++..+-.+.+ +.....|..-+++.-+.|+.+.+-.++.+..+..-.++...+-+.....
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 334445554 3499999999999977776 3445677777888889999999999999998863356677788888899
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcC
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV-------YTYSIVIDALCRCG 301 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g 301 (534)
...|+...|..-.+++.+..+..........++|.+.|++.+...++.+|.+.|.--+. .+|..+++-....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888889999999999999999999999999999998865443 23444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
..+.-...++..... .+.++..-..++.-+.+.|+.++|.++.++..+.+..+. -...-.+.+-++.+.-.+..+
T Consensus 244 ~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 244 GSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred cchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHH
Confidence 444444444444332 122344444555555666666666666666555544333 111112333444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 382 SMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
+..+.. +-++..+.++...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.++.++..
T Consensus 319 ~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 319 KWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 433331 113344555555555555555555555544433 3555555555555555555555555555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-10 Score=118.54 Aligned_cols=251 Identities=14% Similarity=0.157 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALC---------RCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
++++|...|++..+.... +...|..+..++. ..+++++|...+++..+.+ +-+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 356777777777664221 2344444444333 2234677888888777765 3356677777777777888
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009470 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (534)
+++|...|++..+.+ +.+...+..+..++...|++++|...++++.+.+.. +...+..++..+...|++++|.+.+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888877764 445666777777788888888888888888776433 222333344445567778888888877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009470 418 MKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP 496 (534)
Q Consensus 418 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 496 (534)
+.+...+-+...+..+...+...|+.++|...++++... .|+ ....+.+...|+..| ++|...++.+.+.....+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765432224445666677777788888888888776554 333 334445555666666 466666666655432233
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 497 GSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
....+..+ .+.-.|+.+.+..+ +++.+.|
T Consensus 508 ~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 33333333 33344555555555 6666654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.4e-10 Score=116.84 Aligned_cols=268 Identities=8% Similarity=0.026 Sum_probs=185.1
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHhhc
Q 009470 181 ITVDTFSILVRRYVR-----AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC---------RKRRASEAQSFFDSLKD 246 (534)
Q Consensus 181 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~ 246 (534)
.+...|...+++... .+..++|++.|++..+.. +-+...|..+..++. ..++.++|...+++..+
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 455666666665322 234678999999888753 223455655554443 23457899999999888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 247 KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
..+.+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|+..+++..+.... +...+.
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 77888999999999999999999999999999886422 4667888888899999999999999999887522 333334
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG 406 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 406 (534)
.++..+...|++++|...++++.+..-+.+...+..+..++...|++++|...+.++.... ..+....+.+...++..|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence 4455567789999999999988765423345567778888889999999999998876652 123444555666667777
Q ss_pred ChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 407 DVNGAHRMYGKMKDLK-CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
++|...++.+.+.. ..+....+ +-..|.-.|+-+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47777777665421 12222222 33344556777666655 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-10 Score=105.18 Aligned_cols=197 Identities=11% Similarity=0.071 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 444445555555555555555555554432 2233444445555555555555555555544444444455555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009470 264 RAGNISEAERVFREMKMAGI-QPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVL 342 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (534)
..|++++|.+.+++...... ......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555544211 1122334444445555555555555555554442 123334444455555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
..+++..+.. +.+...+..++..+...|+.++|..+.+.+
T Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 190 AYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555544431 223334444444444555555555544444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-08 Score=99.26 Aligned_cols=390 Identities=12% Similarity=0.127 Sum_probs=263.9
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVH 204 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 204 (534)
.+++...+.+.+.+.+ .++...++.....-.+...|+-++|.+....-...+ .-+...|..+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 3456677888888876 344556666666666778899999988887766654 3466789999988988999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 009470 205 AFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG-I 283 (534)
Q Consensus 205 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~ 283 (534)
.|......+ +.|...+.-+.-.-++.|+++........+.+..+.....|..++.++.-.|+...|..++++..+.. -
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999988765 45667777777666778888887777777766666677889999999999999999999999887754 2
Q ss_pred CCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009470 284 QPNVYTYSIVI------DALCRCGQITRAHDVFAEMLEVGCEPNSI-TFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD 356 (534)
Q Consensus 284 ~p~~~~~~~ll------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 356 (534)
.|+...|.... ....+.|..++|++.+..-... ..|.. .-.+-...+.+.++.++|..++..+... .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 45555554332 3345677888888777665433 22322 2334556778888999999999988877 366
Q ss_pred hhhHHHH-HHHHHHcCChHHHH-HHHHHHH----------------------------------HCCCCCCHHHHHHHHH
Q 009470 357 TITYNFL-IDCHCKDGKLEDAI-KVLNSMV----------------------------------RKGCNPNASTFNMIFR 400 (534)
Q Consensus 357 ~~~~~~l-i~~~~~~g~~~~A~-~~~~~m~----------------------------------~~~~~~~~~~~~~l~~ 400 (534)
..-|... ..++.+-.+.-++. .+|.... ++|+++ ++..+..
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~S 328 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRS 328 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHH
Confidence 5555444 34443333333333 4443333 233221 1222222
Q ss_pred HHHhcCChhHHHHHHHHHH----hCC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 009470 401 CISKLGDVNGAHRMYGKMK----DLK----------CEPNTVTY--NILMQMFATSKSTDMVLKLKKEMEENEVEPNV-N 463 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~~~--~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~ 463 (534)
.|-.-...+-..++.-.+. ..| -+|....| -.+++.|-+.|+++.|...++...++ .|+. .
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE 406 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE 406 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence 2211111111111111111 111 13444444 45778889999999999999999986 5554 4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.|.+-.+.+...|++++|..++++..+.. .+|..+-..-+.-..++.+.++|.++..+..+.|.
T Consensus 407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 407 LYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 56666788999999999999999998865 46665555677778899999999999999888875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-10 Score=102.88 Aligned_cols=199 Identities=12% Similarity=0.144 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVH 332 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (534)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444444555555555554444332 1123344444444445555555555555444433 22333444444455
Q ss_pred HHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHH
Q 009470 333 VKASRTEKVLQVYNQMKRLGC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGA 411 (534)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A 411 (534)
...|++++|.+.+++..+... ......+..+..++...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443211 11233444455555556666666666665555432 1344555555666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 412 HRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
.+.+++..+.. ..+...+..++..+...|+.++|..+++.+..
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666655542 23444455555555566666666666555543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-08 Score=94.00 Aligned_cols=369 Identities=11% Similarity=0.141 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK-IAFSIVIS 226 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~ 226 (534)
...|-.-..--...+++..|..+|++....+ .-+...|..-+..=.++.....|..++++.... -|.+ ..|--.+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 3344444445556788999999999998876 346678888899999999999999999998874 3433 34444555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
.=-..|++..|.++|++-.+ ..|+...|.+.|..-.+-+.++.|..+|++..- +.|++.+|-.....=.+.|++.-|
T Consensus 150 mEE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 55568999999999998665 578999999999999999999999999999976 469999999888888899999999
Q ss_pred HHHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------------------------C--------
Q 009470 307 HDVFAEMLEV-GC-EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL------------------------G-------- 352 (534)
Q Consensus 307 ~~~~~~m~~~-~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------------------g-------- 352 (534)
..+|+..++. |- ..+...+.+....-.++..++.|.-+|+-..+. |
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999887654 20 112334444444444455556555555544432 0
Q ss_pred -----------CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-H------HHHH---HHHHHHhcCChhHH
Q 009470 353 -----------CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA-S------TFNM---IFRCISKLGDVNGA 411 (534)
Q Consensus 353 -----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~------~~~~---l~~~~~~~g~~~~A 411 (534)
-+.|..+|--.+..-...|+.+...++|++++..- +|-. . +|.- .+-.-....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 12344555555666666677777777777777652 3311 1 1111 11111345677777
Q ss_pred HHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 412 HRMYGKMKDLKCEPNTVTY----NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 412 ~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
.++|+...+. ++-...|+ -...+--.++.++..|.+++...+. ..|...+|...|..=.+.+++|...+++++
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 7777777662 22233333 3333344566778888888777664 478888888888888888889999999998
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 488 MIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 488 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
.++-+ +-+-.+|......=...|+.+.|..+|+-+++..
T Consensus 463 fle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 463 FLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 88843 3355667777777777889999998888877653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-09 Score=107.50 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFA 438 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (534)
++..+...|-..|++++|++++++.+++.. ..+..|..-.+.+-+.|++++|.+.++.....+.. |...=+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 445556667777777777777777777632 13566777777777777777777777777766533 6666666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPNVN------TY--RILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
++|++++|.+++......+..|-.. .| .-...+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777776654322221 11 2234567777777777776665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-08 Score=90.06 Aligned_cols=368 Identities=10% Similarity=0.071 Sum_probs=248.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-C-HHH-------------HHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-L-AAE-------------AVHAFNRMEE 211 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~-~~~-------------A~~~~~~m~~ 211 (534)
+.+.-...+..|...++-+.|...+......-.. .-.+.++..+.+.| + .+. |++.+.-..+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~---p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~ 172 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRS---PRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLE 172 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccc---hhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHH
Confidence 4556677888888899999998888766544222 22333333333322 1 111 1122222222
Q ss_pred cC---------------CCCCHHHHHHHHHHHHh--cCCHHHHHH--HHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 212 YG---------------CAPDKIAFSIVISILCR--KRRASEAQS--FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAE 272 (534)
Q Consensus 212 ~g---------------~~~~~~~~~~ll~~~~~--~g~~~~A~~--~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (534)
.+ ++|...+....+.++.. .++...|.. ++-+....++.|+.....+...+...|+.++|+
T Consensus 173 l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~ 252 (564)
T KOG1174|consen 173 LGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAE 252 (564)
T ss_pred HhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHH
Confidence 22 22333333334444433 344444433 344445678889999999999999999999999
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 273 RVFREMKMAGIQPNV-YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 273 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
..|++..-. .|+. .......-.+.+.|+++....+...+.... +-....|-.-........+++.|+.+-++.++.
T Consensus 253 ~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 253 DIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 999988754 2322 222222333567888988888888877543 223344444455566778889999988888766
Q ss_pred CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 009470 352 GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYN 431 (534)
Q Consensus 352 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 431 (534)
. +.+...|-.-...+...|++++|.-.|+...... +-+...|..++..|...|+..+|.-+-....+. ...+..+..
T Consensus 330 ~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt 406 (564)
T KOG1174|consen 330 E-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT 406 (564)
T ss_pred C-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh
Confidence 4 4455566666678889999999999999988764 247789999999999999999988777665542 133556665
Q ss_pred HHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 432 ILM-QMFA-TSKSTDMVLKLKKEMEENEVEPNV-NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 432 ~li-~~~~-~~g~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
.+. ..+. ...--++|.++++..... .|+. ...+.+...|...|++++++.++++.+.. .||....+.|.+.+
T Consensus 407 L~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 407 LFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII---FPDVNLHNHLGDIM 481 (564)
T ss_pred hhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh---ccccHHHHHHHHHH
Confidence 552 2222 233457788888877664 5554 45667777888999999999999999884 58999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 009470 509 RRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 509 ~~~g~~~~a~~~~~~~~~~g 528 (534)
...+.+++|.+.|..+++.+
T Consensus 482 ~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 482 RAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999887754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-09 Score=103.00 Aligned_cols=355 Identities=15% Similarity=0.086 Sum_probs=228.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT-VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-KIAFSIVISI 227 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~ 227 (534)
.+....+-+.++|++++|++.|....+.. |+ ...|.....+|...|+|+++++.-.+..+. .|+ .-.+..-..+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHH
Confidence 45555666778888888888888877763 34 567778888888888888888877777664 455 3455566666
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------HHHCC--CCCCHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFRE---------MKMAG--IQPNVYTYSIVIDA 296 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~~g--~~p~~~~~~~ll~~ 296 (534)
+-..|++++|+.-... ..+..++....-.-.+.+++.+ |.+.+ +.|.....++....
T Consensus 193 ~E~lg~~~eal~D~tv------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTV------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred HHhhccHHHHHHhhhH------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 6677777776533222 1222222222212222222221 11111 22333332222221
Q ss_pred HH-----------------------H--cC---CHHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHHHHcC
Q 009470 297 LC-----------------------R--CG---QITRAHDVFAEMLEV---GCEP---N------SITFNNLMRVHVKAS 336 (534)
Q Consensus 297 ~~-----------------------~--~g---~~~~A~~~~~~m~~~---~~~~---~------~~~~~~li~~~~~~g 336 (534)
+- . .+ .+.+|...+.+-... .... | ..+...-...+.-.|
T Consensus 261 F~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 261 FHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred ccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 11 0 01 223333332221110 0001 1 111111122344578
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG 416 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 416 (534)
+.-.|.+-|+..++... .+...|--+..+|....+.++.++.|++..+.+.. +..+|..-.+.+.-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999988753 23333777778899999999999999999998754 77788888888888899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009470 417 KMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP 496 (534)
Q Consensus 417 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 496 (534)
+.+.... -+...|..+.-+..+.+++++++..|++.+++ ++--...|+.....+...++++.|.+.|+.+++. .|
T Consensus 419 Kai~L~p-e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L---E~ 493 (606)
T KOG0547|consen 419 KAISLDP-ENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL---EP 493 (606)
T ss_pred HHhhcCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh---cc
Confidence 9998652 25566666666777889999999999999987 5667789999999999999999999999999984 44
Q ss_pred C-------H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 497 G-------S--SVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 497 ~-------~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+ . .+...++ .+.-.+++..|.+++.++++.+
T Consensus 494 ~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D 533 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD 533 (606)
T ss_pred ccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC
Confidence 4 1 1112222 2223489999999999988754
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-09 Score=100.80 Aligned_cols=288 Identities=11% Similarity=0.034 Sum_probs=217.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 214 CAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIV 293 (534)
Q Consensus 214 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 293 (534)
..-+......-.+-+...+++.+..++++.+.+..++....+..-|.++...|+..+-..+=.+|.+.- +-...+|-.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 344555566666677788899999999999888888888888888888899998888888888887763 3357788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCh
Q 009470 294 IDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKL 373 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 373 (534)
.-.|.-.|+..+|.+.|.+....+ +.-...|-.+...|.-.|..|+|+..|...-+.- +-...-+--+.--|.+.+..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 888888899999999998877654 2235578888888888999999998888776541 11111222333447778899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC--CCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 374 EDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL----KC--EPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 374 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~--~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
+-|.+.|.+..... +-|+..++-+.-.....+.+.+|..+|+...+. +. .--..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999888764 347777888877777788899999988877521 10 113456788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLR 509 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 509 (534)
..++...... +-+..++..+.-.|...|+++.|++.|.+.+. +.|+..+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCccHHHHHHHHHHH
Confidence 9999888763 66888888888888899999999999998887 5687766666665443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=116.35 Aligned_cols=273 Identities=17% Similarity=0.204 Sum_probs=142.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 170 FIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 170 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
++-.+...|+.|+..+|..+|..|+..|+.+.|- +|.-|+-...+.+...|+.++......++.+.+. .
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------e 80 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------E 80 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------C
Confidence 3455666677777777777777777777777776 7777665555666677777777766666666654 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHH
Q 009470 250 PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE-VGCEPNSITFNNL 328 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l 328 (534)
|...+|..|..+|...||+.. ++..++ ..-.+...+...|.-..-..++..+.- .+.-||..+ .
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~ 145 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A 145 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence 566777777777777777654 121221 011122223333333333333322211 112223222 2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD-GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGD 407 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 407 (534)
+....-.|-++.+++++..+-........ ..+++-+... ..+++-..+.+...+ .++..+|..++.+-...|+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~p~---~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPF---QVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccchH---HHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCc
Confidence 23333444455555544433221100000 0012211111 112222222222222 3566666666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 408 VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
.+.|..++.+|++.|++.+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+..+..+|.
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66666666666666666666655555544 55666666666666666666666666666666555444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-08 Score=102.34 Aligned_cols=298 Identities=11% Similarity=0.126 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI-VISI 227 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~ 227 (534)
++.-....++...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+...|.. +..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 34444556678889999999999775444 34446677888899999999999999999999876 56655544 4444
Q ss_pred HHh-----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 228 LCR-----KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI-SEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 228 ~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
..- ..+.+...++++++...+|... ....+.-.+.....+ ..+..++..+...|++ .+|+.+-..|....
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~-~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSD-APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPE 157 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCcccc-chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChh
Confidence 422 2356778888998877664322 222222222222223 3455666677777765 24555666666566
Q ss_pred CHHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 302 QITRAHDVFAEMLEV----G----------CEPNSI--TFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
+.+-..+++...... + -.|... ++..+...|...|++++|++.+++.++.. +..+..|..-..
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kar 236 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 666666666665432 1 123333 44556778889999999999999998873 334778888899
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV------TY--NILMQMF 437 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~ 437 (534)
.+-+.|++++|.+.++.....+.. |...-+..+..+.+.|++++|.+++......+..|-.. .| .....+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654 77777888889999999999999999887665433221 12 3345678
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009470 438 ATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~m~~ 455 (534)
.+.|++..|++-+..+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 889999888877665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-10 Score=102.47 Aligned_cols=227 Identities=15% Similarity=0.156 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHc
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITF-NNLMRVHVKA 335 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~ 335 (534)
.+.++|.+.|.+.+|.+.++.-.+. .|-+.||-.|-..|.+..+.+.|+.++.+-.+. .|..+|| ..+.+.+-..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 4445555555555555555444433 233344444455555555555555555444433 2222222 2344444445
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
++.++|.++|+...+.. +.++.....+...|.-.++++-|+.+++++...|+. +...|+.+.-+|...+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 55555555555544432 333444444444444455555555555555555443 4444555554555555555555544
Q ss_pred HHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 416 GKMKDLKCEPN--TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 416 ~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
++....--.|+ ...|..+.......|++..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..++..+..
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 44433221122 1234344444444455555555554444432 22344444444444445555555555444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-10 Score=102.21 Aligned_cols=229 Identities=14% Similarity=0.146 Sum_probs=150.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (534)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-+.|.+..+.+.|+.++.+..+.+|-|+....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 56677777888888888877776653 4666777777778888888888888877777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
+.++|.++|++..+.. ..++.....+...|.-.++.+-|+.+++++.+.|+. +...|+.+.-+|.-.+++|-++.-|.
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 7777777777776642 224555555666666777777777777777777744 66667777667777777777777776
Q ss_pred HHHHcCCCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 347 QMKRLGCEAD--TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 347 ~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
+....--.|+ ..+|..+.......|++..|.+.|+-....+.. +...++.+.-.-.+.|++++|..++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6654432222 234555555555556666666666655554322 445555555555556666666666555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-10 Score=115.25 Aligned_cols=279 Identities=16% Similarity=0.166 Sum_probs=200.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
.++..+...|+.|+..||..+|.-||..|+.+.|- +|.-|+- ..+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667888999999999999999999999999998 8888875 36677889999999999999887776
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-HcCCCCChhhHH
Q 009470 283 IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMK-RLGCEADTITYN 361 (534)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~ 361 (534)
.|-..+|..|..+|...|++.- |+...+ -...+...+...|.-.....++..+. ..+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 5788999999999999999876 333222 12233445556665555555555433 223334433
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (534)
..+......|-++.+.+++..+...... .. +..+++-+... ..-.+++....+...-.|+..+|..++..-...|
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 3444455667778888877666433111 11 11123333222 2233344443333222589999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHE 518 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 518 (534)
+.+.|..++.+|.+.|++.+..-|..++-+ .|+..-+..+++-|.+.| +.|+.+|+...+-.+...|....+.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~ 291 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGE 291 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhcc
Confidence 999999999999999999999988888866 788888888888888877 8999999998888777766544443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-09 Score=105.30 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=102.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCC-CCH-H
Q 009470 328 LMRVHVKASRTEKVLQVYNQMKRL-----G--CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK-----GCN-PNA-S 393 (534)
Q Consensus 328 li~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~~-~ 393 (534)
+...|...+++++|..+|+++... | .+--..+++.|..+|++.|++++|...+++..+- |.. +.+ .
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344455555555555555554321 1 0111233444445555555555555555544321 111 111 2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CC
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKD-----LKCE--PNTVTYNILMQMFATSKSTDMVLKLKKEMEEN-----E--VE 459 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~--~~ 459 (534)
.++.+...++..+++++|..++++..+ .|.. --..+++.|...|...|++++|.+++++.... | ..
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 234455556666666666666665432 1111 11345666777777777777777777665432 1 11
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 460 PNVNTYRILITMYCGMGHWNNAYKYIREMIE----EKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 460 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
-....++.+...|.+.+++.+|.++|.+... -|.-.|+ ..+|..|...|.+.|++++|.++.+.+.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1234556666667777777766666665432 1111222 2456667777777777777777766654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-08 Score=92.75 Aligned_cols=296 Identities=13% Similarity=0.087 Sum_probs=224.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEY-GCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
+.+..++...|...+-.+... -++-|......+...+...|+.++|+..|++...-.+.+..........+.+.|+++.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 344456666666666555432 3466778889999999999999999999999876555555566666677788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
...+...+.... +-....|-.-+......++++.|+.+-++.++.. +.+...|..-.+.+...++.++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 988888886532 1233444444555667889999999999988775 34566666666788899999999999998887
Q ss_pred cCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHH-HhcCChhHHHHHHHHHHhCCCCCC-H
Q 009470 351 LGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIF-RCI-SKLGDVNGAHRMYGKMKDLKCEPN-T 427 (534)
Q Consensus 351 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~m~~~~~~p~-~ 427 (534)
.. +-+...|.-|+.+|...|++.+|..+-+...+. ...+..+...+. ..+ ..-..-++|.+++++.... .|+ .
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 64 567889999999999999999999888877665 223555555542 222 2233457899999988765 454 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 498 (534)
...+.+...+...|..+.++.+++..... .||....+.|...+...+.+.+|++.|..++.. .|+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~---dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ---DPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---Cccc
Confidence 55677888899999999999999998774 789999999999999999999999999999884 4554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=82.30 Aligned_cols=49 Identities=51% Similarity=1.120 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 250 PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-09 Score=104.29 Aligned_cols=242 Identities=18% Similarity=0.242 Sum_probs=173.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 009470 248 FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA-----GI-QPNVY-TYSIVIDALCRCGQITRAHDVFAEMLEV---- 316 (534)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~~---- 316 (534)
.|.-..+...+...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3334456666888999999999999998887653 21 22332 2344677888899999999999988653
Q ss_pred -CC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 317 -GC-EP-NSITFNNLMRVHVKASRTEKVLQVYNQMKRL-----GC-EADT-ITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 317 -~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
|- .| -..+++.|...|++.|++++|...++...+. |. .+.. ..++.++..++..+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 21 11 2346677777899999999888877765432 21 1222 33566777888999999999998876543
Q ss_pred -----CCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 387 -----GCN--PNASTFNMIFRCISKLGDVNGAHRMYGKMKDL----KCE--P-NTVTYNILMQMFATSKSTDMVLKLKKE 452 (534)
Q Consensus 387 -----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~a~~l~~~ 452 (534)
|.. .-..+++.+...|.+.|++++|+++++++... +.. + ....++.+...|.+.+++++|.++|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 111 12467899999999999999999999987542 111 1 244678888899999999999998877
Q ss_pred HHH----CCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 453 MEE----NEV-EPN-VNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 453 m~~----~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
... .|. .|+ ..+|..|...|...|++++|.++.+.+.
T Consensus 435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 543 221 223 4678999999999999999999988776
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-08 Score=98.18 Aligned_cols=284 Identities=13% Similarity=0.084 Sum_probs=229.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
-+.+....-.+.+...+++.+..++++.+.+.. ++....+..-|..+...|+..+-..+=.++.+..|..+.+|-++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 345666677778888999999999999998764 6677777778889999999998888888899999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCh
Q 009470 261 GWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV--GCEPNSITFNNLMRVHVKASRT 338 (534)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 338 (534)
.|.-.|+..+|.+.|.+....+.. =...|-.....|.-.|..++|+..+...-+. |+. ..+--+.--|.+.++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h---lP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH---LPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---chHHHHHHHHHHhccH
Confidence 999999999999999988654211 2456888888999999999999998877654 321 1122334457889999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhcCChhHHH
Q 009470 339 EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----G--CNPNASTFNMIFRCISKLGDVNGAH 412 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~ 412 (534)
+.|.+.|.+....- +.|+.+++-+.-.....+.+.+|..+|+..... + ...-..+++.+..++.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999988764 678888888888888899999999999987732 1 1123456889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
..+++..... +-+..++.++.-.|...|+++.|.+.|.+... +.|+..+...++..+.
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999998865 44889999999999999999999999999886 4777766666665443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=81.55 Aligned_cols=50 Identities=36% Similarity=0.663 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 009470 285 PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK 334 (534)
Q Consensus 285 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 334 (534)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56667777777777777777777777777777777777777777766653
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-07 Score=92.71 Aligned_cols=302 Identities=12% Similarity=0.078 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGC-APDK-IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
.|..+...+...|+.+.+.+.+.+..+... ..+. .........+...|++++|.+.+++.....|.|...+.. ...+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence 344444444455555555444444332211 1111 111122223445566666666666655544444444432 1122
Q ss_pred Hh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 263 CR----AGNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 263 ~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
.. .+..+.+.+.+... .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22 23333333333331 111222 2233344455566666666666666666654 3344555566666666666
Q ss_pred hhHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCChhH
Q 009470 338 TEKVLQVYNQMKRLGC-EADT--ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC-NPNASTF-N--MIFRCISKLGDVNG 410 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~ 410 (534)
+++|...+++..+..- .++. ..|..+...+...|++++|..+++++..... .+..... + .++..+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 6666666666554321 1121 2344556666677777777777766643321 1111111 1 22222233333333
Q ss_pred HHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C-----CHHHHHHHHHHHHhCCCH
Q 009470 411 AHRM--Y-GKMKDLKC-EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE---P-----NVNTYRILITMYCGMGHW 478 (534)
Q Consensus 411 A~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~---p-----~~~~~~~li~~~~~~g~~ 478 (534)
+.++ . ........ ............++...|+.++|..+++.+...... - .....-....++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3332 1 11111100 011112224555667778888888888777653211 0 111112222345577888
Q ss_pred HHHHHHHHHHHH
Q 009470 479 NNAYKYIREMIE 490 (534)
Q Consensus 479 ~~A~~~~~~~~~ 490 (534)
++|.+.+.+.+.
T Consensus 324 ~~A~~~L~~al~ 335 (355)
T cd05804 324 ATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHH
Confidence 888888877765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-07 Score=92.74 Aligned_cols=306 Identities=9% Similarity=0.013 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDV---IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVI 294 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 294 (534)
...|..+...+...|+.+.+.+.+.......+.+. .........+...|++++|.+.+++..+... .+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-h
Confidence 44566666777777888887777776654433332 2233345567788999999999999887632 23434442 2
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 009470 295 DALCR----CGQITRAHDVFAEMLEVGCEPN-SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCK 369 (534)
Q Consensus 295 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 369 (534)
..+.. .|..+.+.+.++. ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 23333 3455555555544 1122333 3444556678899999999999999999875 5567788889999999
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCC
Q 009470 370 DGKLEDAIKVLNSMVRKGCN-PNA--STFNMIFRCISKLGDVNGAHRMYGKMKDLKC-EPNTVTY-N--ILMQMFATSKS 442 (534)
Q Consensus 370 ~g~~~~A~~~~~~m~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~ 442 (534)
.|++++|...+++....... ++. ..|..+...+...|++++|.+++++...... .+..... + .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 99999999999998876321 232 3456788889999999999999999864332 1112111 1 23333344454
Q ss_pred HHHHHHH--HHHHHHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-----CC--CHHHHHHHHHHHHHc
Q 009470 443 TDMVLKL--KKEMEENEVE--PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCL-----KP--GSSVYEMVLQQLRRA 511 (534)
Q Consensus 443 ~~~a~~l--~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~p--~~~~~~~l~~~~~~~ 511 (534)
.+.+.++ +........+ ...........++...|+.++|.++++.+.....- .. .........-++.+.
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~ 320 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAE 320 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHc
Confidence 4433333 1111111111 11122235666788999999999999988663311 00 111222233345788
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009470 512 GQLQKHEELVEKMVDRG 528 (534)
Q Consensus 512 g~~~~a~~~~~~~~~~g 528 (534)
|+.++|.+.+...+..+
T Consensus 321 g~~~~A~~~L~~al~~a 337 (355)
T cd05804 321 GNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-07 Score=88.19 Aligned_cols=375 Identities=12% Similarity=0.161 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSR-NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
|..|-.-+..+.+.|+...-+..|+..... .+......|...+.-....|-++-+++++++..+. ++..-+.-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 446666666677777777777777765543 33334456777777777777777777777777653 2333555666
Q ss_pred HHHhcCCHHHHHHHHHHhhcc-------CCCCHHH--------------------------------------HHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDK-------FEPDVIV--------------------------------------YTNLVRG 261 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~--------------------------------------~~~li~~ 261 (534)
.+++.++.++|.+.+..+... .+.+-.. |++|+..
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 667777777777766654321 2223333 4444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHH----
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSIT-------FNNLMR---- 330 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~-------~~~li~---- 330 (534)
|.+.|.++.|..+|++.... ..++.-|..+-+.|..-..-.-+..+=-.-.+.|-.-+... +..+++
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 55555555555555444432 12333334444444332211111100000000111111111 111111
Q ss_pred ----HHH----------------HcCChhHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 331 ----VHV----------------KASRTEKVLQVYNQMKRLGCEA------DTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 331 ----~~~----------------~~g~~~~a~~~~~~~~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
.++ ..|+..+....|.+..+. +.| -...|..+...|-..|+.+.|..+|++..
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 011 122233444444444432 111 12346677778888888888888888887
Q ss_pred HCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----------CCC------CHHHHHHHHHHHHhcCCHH
Q 009470 385 RKGCNPN---ASTFNMIFRCISKLGDVNGAHRMYGKMKDLK-----------CEP------NTVTYNILMQMFATSKSTD 444 (534)
Q Consensus 385 ~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----------~~p------~~~~~~~li~~~~~~g~~~ 444 (534)
+...+-- ..+|..-...-.+..+++.|.++.++....- .++ +...|..+++.--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7644322 2344444555556777888888777664311 011 2234555555555567777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR---AGQLQKHEELV 521 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~ 521 (534)
....+++.+.+..+. +..........+-.+.-++++.+++++-+.....+.-..+|+..+.-+.+ .-+++.|+.+|
T Consensus 495 stk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 778888887775433 22222222223444555677777777666654222223455555554433 24567777777
Q ss_pred HHHHHcCCCC
Q 009470 522 EKMVDRGFTA 531 (534)
Q Consensus 522 ~~~~~~g~~~ 531 (534)
+++++ |+.|
T Consensus 574 EqaL~-~Cpp 582 (835)
T KOG2047|consen 574 EQALD-GCPP 582 (835)
T ss_pred HHHHh-cCCH
Confidence 77777 5554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-06 Score=84.28 Aligned_cols=395 Identities=13% Similarity=0.126 Sum_probs=232.6
Q ss_pred HHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 114 HVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRY 193 (534)
Q Consensus 114 ~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 193 (534)
.++.......+.+.+.+|+...+.+... .+.+...+..-+-++.+.+.|++|+.+.+.-... ..+...+---..+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 3444444445667788899888888753 3556777888888888999999998555432211 11111112223444
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC----------------------
Q 009470 194 VRAGLAAEAVHAFNRMEEYGCAP-DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEP---------------------- 250 (534)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---------------------- 250 (534)
.+.++.++|+..++ |+.+ +..+...-.+.+.+.|++++|.++|+.+.....+
T Consensus 90 Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 57888999998887 3333 3446667777888899999999999877322111
Q ss_pred ---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHHcCCHHHHH
Q 009470 251 ---------DVIVYTNLVRGWCRAGNISEAERVFREMKMAG-------------IQPNVY-TYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 251 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~-~~~~ll~~~~~~g~~~~A~ 307 (534)
+-..+......+...|++.+|+++++...+.+ +.-+.. .-..+.-.+...|+-++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 11122233455677889999999988873211 010111 1223445566789999999
Q ss_pred HHHHHHHHcCCCCCHHH----HHHHHHHHHHcCChh-------------HHHHHHHHHHH--------------------
Q 009470 308 DVFAEMLEVGCEPNSIT----FNNLMRVHVKASRTE-------------KVLQVYNQMKR-------------------- 350 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~-------------~a~~~~~~~~~-------------------- 350 (534)
.++...++.. .+|... -|.++..-....-++ -+..+...+..
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9998888875 334322 122221100000000 00000000000
Q ss_pred ---------c-CCCCChhhHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--
Q 009470 351 ---------L-GCEADTITYNFLIDCH--CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG-- 416 (534)
Q Consensus 351 ---------~-g~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-- 416 (534)
. +..|. ..+.+++..+ ++...+.+|.+++...-+....-...+.-.++......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0 11122 2233333332 2223466777777776665433234566667778889999999999999
Q ss_pred ------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH----HHHHHHHHHHhCCCHHHHHHH
Q 009470 417 ------KMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN--EVEPNVN----TYRILITMYCGMGHWNNAYKY 484 (534)
Q Consensus 417 ------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~ 484 (534)
.+.+.+..|- +...+...+.+.++.+.|..++.+.... .-.+... ++...+..-.+.|+.++|..+
T Consensus 403 ~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 5555554444 4455666777878777777777666431 0111222 333344444567999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 485 IREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 485 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
++++++.. +++..+...++.+|++. +.+.|..+-.++
T Consensus 481 leel~k~n--~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFN--PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhC--CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999965 67888888899888875 467777665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-08 Score=89.68 Aligned_cols=292 Identities=12% Similarity=0.096 Sum_probs=179.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI-VISIL 228 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-ll~~~ 228 (534)
-+..++..+.+..++++|++++....+++ +-+......+..+|.+..++..|-+.++++-.. .|...-|.. -.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 46677777788888888888888777775 336677888888888888888888888888663 455555543 34556
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLV--RGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
.+.+.+..|+++...|.+. ++...-..-+ ......+++..+..++++....| +..+.+...-...+.|++++|
T Consensus 89 Y~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 6778888888888877653 1111111112 22345677777877777765332 334444444445678888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChh----------------------------
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTI---------------------------- 358 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~---------------------------- 358 (534)
++-|+...+.+--.....|+..+ +..+.|+.+.|++...+++++|+...+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 88888887765444556676555 4456788888888888888888653111
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRK-GCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF 437 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (534)
.+|.-...+.+.|+++.|.+.+.+|.-+ ....|+.|...+.-.- ..+++.+..+-+.-+.+... -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 0122222234566666666666666433 2234555554433221 12334444444444444432 3445666666667
Q ss_pred HhcCCHHHHHHHHHH
Q 009470 438 ATSKSTDMVLKLKKE 452 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~ 452 (534)
|++.-++.|..++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 776666666666544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.9e-08 Score=83.72 Aligned_cols=197 Identities=16% Similarity=0.092 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
..-|.-.|...|++..|.+-+++..+.. +-+..++..+...|.+.|+.+.|.+.|++.....+.+..+.|...-.+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3334455555555555555555555543 223445555555555555555555555555554455555555555555666
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 009470 266 GNISEAERVFREMKMAGIQ-PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQV 344 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 344 (534)
|++++|...|++....-.- -...+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.+...+.|++..|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666555543111 113345555555555556666665555555543 12233444555555555555555555
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 345 YNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 345 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
++.....+. ++....-..|..--..|+.+.+.+.=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555542 5555555555555555555555554444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.3e-08 Score=83.07 Aligned_cols=208 Identities=13% Similarity=0.115 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC 368 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 368 (534)
+...|.-+|...|+...|.+-+++.++.. +-+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456667777888888888888877764 3356677777777888888888888888777664 455667777777778
Q ss_pred HcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 369 KDGKLEDAIKVLNSMVRKG-CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|++..+.... ...+...+.+...+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888777652 1223456777777777888888888888887776522 4455666777777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEM 503 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 503 (534)
..++.....+ .++.......|+.--+.|+.+.+-++=.++... -|...-|..
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~---fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL---FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHh
Confidence 8888777765 377777777777777788888777766666654 355444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.1e-07 Score=100.87 Aligned_cols=378 Identities=10% Similarity=0.050 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
..+......+...|++..|...+....... .-..............|+++.+.++++.+.......+..........+
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 345555566667777777665554432211 001112223344556788888777777653211112222333444555
Q ss_pred HhcCCHHHHHHHHHHhhccCC-------CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFE-------PD--VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN----VYTYSIVID 295 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~-------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~ 295 (534)
...|++++|...++....... +. ......+...+...|++++|...+++..+.-...+ ....+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 678999999998887643211 11 12223344556789999999999998876311112 134455666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCC--C-ChhhHHHH
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGC---EP--NSITFNNLMRVHVKASRTEKVLQVYNQMKRL----GCE--A-DTITYNFL 363 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~--~-~~~~~~~l 363 (534)
.+...|++++|...+++.....- .+ ...++..+...+...|++++|...+++.... +.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 77889999999999988764311 11 1234455667788899999999998876542 211 1 22345556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHH-----HHH
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRK----GCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP-NTVTY-----NIL 433 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~-----~~l 433 (534)
...+...|++++|...+.+.... +.......+..+...+...|+.++|.+.+++........ ....+ ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 66778889999999999887653 111123344556677888999999999998875421110 11111 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC-CHHHHHHHHH
Q 009470 434 MQMFATSKSTDMVLKLKKEMEENEVEPNV---NTYRILITMYCGMGHWNNAYKYIREMIEEK---CLKP-GSSVYEMVLQ 506 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~ 506 (534)
+..+...|+.+.|.+++............ ..+..+..++...|++++|...++++.+.. +... ...+...+..
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 24445678999999887775542211111 123456677889999999999999887632 1111 1234556677
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC
Q 009470 507 QLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 507 ~~~~~g~~~~a~~~~~~~~~~g 528 (534)
++.+.|+.++|.+.+.++++..
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 8899999999999999987753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-06 Score=84.64 Aligned_cols=367 Identities=14% Similarity=0.105 Sum_probs=190.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
+...|+.+.-++...+++++|+..|......+ +.|...|.-+.-.-++.|+++.....-..+.+.. +-....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 44455555555555566666666666555544 3445555555555555555555555554444421 122334444444
Q ss_pred HHHhcCCHHHHHHHHHHhhccC--CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKF--EPDVIVYTNLV------RGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
++.-.|+...|..+.+...+.. .|+...|.... ....+.|..++|.+.+..-... +.-....-.+-...+.
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~ 230 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLM 230 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHH
Confidence 5555555555555555544322 23443333222 2233444455554444433221 1101111122334445
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCh-----------------------------------hHHH
Q 009470 299 RCGQITRAHDVFAEMLEVGCEPNSITFNNLM-RVHVKASRT-----------------------------------EKVL 342 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~~-----------------------------------~~a~ 342 (534)
+.+++++|..++..++.. .||...|...+ .++.+-.+. +...
T Consensus 231 kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 231 KLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHH
Confidence 555555555555555554 23333333222 222211111 2233
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC--C------------CCCCHH--HHHHHHHHHHhcC
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK--G------------CNPNAS--TFNMIFRCISKLG 406 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~------------~~~~~~--~~~~l~~~~~~~g 406 (534)
+++..+.+.|+++ ++..+...|-.-...+--.++...+... | -+|... ++..++..+-+.|
T Consensus 309 kyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g 385 (700)
T KOG1156|consen 309 KYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLG 385 (700)
T ss_pred HHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcc
Confidence 3344444444432 2333333332222222111222222111 1 134443 4456778888999
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPN-TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
+++.|...++...+. .|+ ...|..-.+.+...|++++|..++++..+.. .+|...-..-+.-..++++.++|.++.
T Consensus 386 ~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 386 DYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred cHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHH
Confidence 999999999999875 344 3455566688899999999999999999876 566665556667777889999999999
Q ss_pred HHHHHcCC-CCCC----HHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q 009470 486 REMIEEKC-LKPG----SSVYEMV--LQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 486 ~~~~~~~~-~~p~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 524 (534)
....+.|. ..-+ .-.|..+ ..+|.++|++-+|.+-+..+
T Consensus 463 skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 463 SKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 88877651 1011 1123222 34677777777776655544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-08 Score=92.37 Aligned_cols=95 Identities=17% Similarity=-0.002 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
|..+...+...|+.++|...|++..+..+.+...|+.+...+...|++++|...|++..+.... +...|..+...+...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 3334444444455555555554444444444455555555555555555555555555443211 233444444444455
Q ss_pred CCHHHHHHHHHHHHHc
Q 009470 301 GQITRAHDVFAEMLEV 316 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~ 316 (534)
|++++|++.++...+.
T Consensus 146 g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 146 GRYELAQDDLLAFYQD 161 (296)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555554443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.7e-08 Score=92.52 Aligned_cols=218 Identities=14% Similarity=0.051 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRN---VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 238 (534)
+..+.++.-+.++.... .......|..+...|...|++++|+..|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555331 11123456666667777777777777777776643 334566777777777777777777
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC 318 (534)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 318 (534)
+.|++..+..+.+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|...+++.....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777666555566777777777777777777777777776643 322211122222334566777777776544332
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---C---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009470 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG---C---EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 387 (534)
.++...+ .......|+...+ +.+..+.+.. . +.....|..+...+.+.|++++|...|++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222111 1222234444433 2333333210 0 1123456666666666677777777766666554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.9e-06 Score=81.64 Aligned_cols=372 Identities=11% Similarity=0.162 Sum_probs=224.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN------VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC--APDK 218 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~ 218 (534)
+|..-+--|..+.+.+++++|-+.+....... .+-+...|..+-+...++-+.-..+.+=.-| +.|+ -+|.
T Consensus 168 ~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaii-R~gi~rftDq 246 (835)
T KOG2047|consen 168 APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAII-RGGIRRFTDQ 246 (835)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHH-HhhcccCcHH
Confidence 55566777788888888888888887665431 1334556777766666665544433332222 2222 2343
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHH
Q 009470 219 --IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG----------------------NISEAERV 274 (534)
Q Consensus 219 --~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~A~~~ 274 (534)
..|++|.+-|.+.|.+++|..+|++....+ .++.-|+.+-..|..-. +++-.+.-
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 468899999999999999999999876531 12333444444443221 12222333
Q ss_pred HHHHHHCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCC
Q 009470 275 FREMKMAGI-----------QPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP------NSITFNNLMRVHVKASR 337 (534)
Q Consensus 275 ~~~m~~~g~-----------~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~~~~~li~~~~~~g~ 337 (534)
|+.+.+.+. .-++..|..-+. +..|+..+-...+.+..+. +.| -...|..+.+.|-..|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~ 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGD 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCc
Confidence 333332210 112222222221 2346667777777777654 122 23467888899999999
Q ss_pred hhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------C------CHHHHHH
Q 009470 338 TEKVLQVYNQMKRLGCEAD---TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-----------P------NASTFNM 397 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~------~~~~~~~ 397 (534)
.+.|..+|++..+...+.- ..+|..-...-.+..+++.|+++++......-. + +...|..
T Consensus 403 l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 403 LDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 9999999999987643322 455666666667788899999988877543111 1 2234556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh--
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV-NTYRILITMYCG-- 474 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~-~~~~~li~~~~~-- 474 (534)
.++..-..|-++....+|+++.+..+. ++.........+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh
Confidence 666666788899999999999887754 4444333444455666778888888776654334443 456665554443
Q ss_pred -CCCHHHHHHHHHHHHHcCCCCCCHH-H-HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 475 -MGHWNNAYKYIREMIEEKCLKPGSS-V-YEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 475 -~g~~~~A~~~~~~~~~~~~~~p~~~-~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
....+.|..+|+++++ +| +|... + |......=.+-|-...|..+++++..
T Consensus 562 gg~klEraRdLFEqaL~-~C-pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALD-GC-PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3467889999999988 43 34322 1 21222222344777777777777543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-06 Score=88.23 Aligned_cols=378 Identities=12% Similarity=0.082 Sum_probs=253.1
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH
Q 009470 144 FVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP-DKIAFS 222 (534)
Q Consensus 144 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~ 222 (534)
+.-++.+|..+.-.+...|+++.+-+.|++....-+ .....|..+...|...|.-..|+.+++.-....-.| |...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 445788999999999999999999999998765532 345789999999999999999999988765432224 344444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhhcc-----CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCC-
Q 009470 223 IVISILCR-KRRASEAQSFFDSLKDK-----FEPDVIVYTNLVRGWCRA-----------GNISEAERVFREMKMAGIQ- 284 (534)
Q Consensus 223 ~ll~~~~~-~g~~~~A~~~~~~~~~~-----~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~- 284 (534)
..-..|.+ .+..++++.+-.++... ..-....|-.+.-+|... ....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44444443 46666666666554431 112334444444444322 2346788888888776433
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCC---------
Q 009470 285 PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL-GCE--------- 354 (534)
Q Consensus 285 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~--------- 354 (534)
|++.- .+.--|+..++++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. |..
T Consensus 478 p~~if--~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIF--YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHH--HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 33333 334457788889999999998888865678888888888888888998888888765442 210
Q ss_pred ---------CChhhHHHHHHHHHH------c-----------------CChHHHHHHHHHHH--------HCC-------
Q 009470 355 ---------ADTITYNFLIDCHCK------D-----------------GKLEDAIKVLNSMV--------RKG------- 387 (534)
Q Consensus 355 ---------~~~~~~~~li~~~~~------~-----------------g~~~~A~~~~~~m~--------~~~------- 387 (534)
.-..|...++..+-. . ++..+|......+. ..|
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 001122222221110 0 01111111111110 001
Q ss_pred --C--CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 388 --C--NPN------ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 388 --~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
. .|+ ...|......+.+.+..++|...+.+..... ......|......+...|..++|.+.|......+
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0 011 1234455566777888888888888876643 3456667777777888899999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 458 VEPNVNTYRILITMYCGMGHWNNAYK--YIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 458 ~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
+-+......+...+.+.|+..-|.. ++.++++.+ +.+...|..+...+.+.|+.+.|-+.|....+..
T Consensus 715 -P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 715 -PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred -CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 4456678899999999998887777 999999976 5678899999999999999999999999887753
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-07 Score=81.24 Aligned_cols=385 Identities=11% Similarity=0.064 Sum_probs=218.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF 206 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 206 (534)
++.-|+.+.+....... .-...+-..+...+...|++++|...+..+.+.. .++...+..+...+.-.|.+.+|..+.
T Consensus 37 DytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred cchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 45667777776653221 2223455567778889999999999999887765 456678888888888899999998876
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 207 NRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 207 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
.+. +.++..-..++..--+.|+-++-..+.+.+.+. ..---+|.......-.+++|++++.+....+ |+
T Consensus 115 ~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~e 183 (557)
T KOG3785|consen 115 EKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PE 183 (557)
T ss_pred hhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hh
Confidence 543 234444555666666778887777777766542 2333455555555667899999999988753 44
Q ss_pred HHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH--------------HHHc
Q 009470 287 VYTYSIV-IDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQ--------------MKRL 351 (534)
Q Consensus 287 ~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------------~~~~ 351 (534)
-...|.- .-+|.+..-++-+.++++-..+.- +-+....|.......+.=.-..|.+-.+. +.+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rH 262 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRH 262 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHc
Confidence 4444443 345677888888888888776652 22334444333322221111111111111 1111
Q ss_pred C------------CCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HhcCChh
Q 009470 352 G------------CEA-----DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCI-----SKLGDVN 409 (534)
Q Consensus 352 g------------~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-----~~~g~~~ 409 (534)
+ +-| =+..--.|+-.|.+.+++.+|..+.+++.-. .|.......+..+- .....+.
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 1 001 1122334555678999999999998876532 23332222222221 1111233
Q ss_pred HHHHHHHHHHhCCCC----CCHH----------------HH---------------HHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 410 GAHRMYGKMKDLKCE----PNTV----------------TY---------------NILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 410 ~A~~~~~~m~~~~~~----p~~~----------------~~---------------~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
-|.+.|+..-+.+.. |... +| -.+.++++..|++.+|.++|-.+.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 455555544333221 1111 11 234566666777777777776665
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 009470 455 ENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTA 531 (534)
Q Consensus 455 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 531 (534)
...++.+..-...+.++|.+.|+.+-|++++-++-. +.+ ......+.+-|.+.+++--|.+.|+.+...+..|
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 544333333334445567777777777665433321 111 2233444556777777777777777666554433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.2e-07 Score=85.37 Aligned_cols=356 Identities=14% Similarity=0.113 Sum_probs=190.0
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 123 RHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEA 202 (534)
Q Consensus 123 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 202 (534)
-..+++..|+..|..++... +++...|..-...|.+.|++++|++--.+-.+.+ |.-...|.....++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHH
Confidence 35678999999999998754 3477899999999999999999987777766664 44578899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------Hhhcc----CCCCHHHHHHHHHHHHhc-------
Q 009470 203 VHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFD------SLKDK----FEPDVIVYTNLVRGWCRA------- 265 (534)
Q Consensus 203 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~------~~~~~----~~~~~~~~~~li~~~~~~------- 265 (534)
+..|.+-.+.. +-+...+..+..++.... .+.+.|. .+... .......|..++..+-+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999988754 445666777777762111 1111111 11110 000111222222222111
Q ss_pred ---CCHHHHHHHHHHH-----HHCC-------CCCC----------------------HHHHHHHHHHHHHcCCHHHHHH
Q 009470 266 ---GNISEAERVFREM-----KMAG-------IQPN----------------------VYTYSIVIDALCRCGQITRAHD 308 (534)
Q Consensus 266 ---g~~~~A~~~~~~m-----~~~g-------~~p~----------------------~~~~~~ll~~~~~~g~~~~A~~ 308 (534)
.++..|...+... ...| ..|. ..-...+.++..+..+++.|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 1111121111100 0001 1110 1113445666667777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH-------HHHHHHHcCChHHHHHHHH
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF-------LIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-------li~~~~~~g~~~~A~~~~~ 381 (534)
-+....+.. -+..-++....+|...|.+.+....-....+.|- -...-|+. +..+|.+.++++.|...|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 777777654 3444555566677777777766666665555541 11122222 3335556677777777777
Q ss_pred HHHHCCCCCCHHHHH-------------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009470 382 SMVRKGCNPNASTFN-------------------------MIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQM 436 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~-------------------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 436 (534)
+.......|+...-. .-...+.+.|++..|++.|.+++... +-|...|....-+
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac 401 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAAC 401 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHH
Confidence 765543332221110 01122334445555555555544443 2244445444445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
|.+.|.+..|++-.+...+.. ++....|..=..++....+|++|++.|++.++
T Consensus 402 ~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 402 YLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555544444444431 22222233333333334445555555554444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-06 Score=79.90 Aligned_cols=368 Identities=15% Similarity=0.144 Sum_probs=216.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
..-.=++.+.+.|++++|.+..+.+...+ +.+...+..-+.+.++.+++++|+.+.+.-.. ...+...+-.-..+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHH
Confidence 33445677889999999999999998876 67888899999999999999999966544321 1112222112233444
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----------------------
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP-N---------------------- 286 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~---------------------- 286 (534)
+.+..++|+..++-... .|..+...-.+.+.+.|++++|+++|+.+.+.+.+- +
T Consensus 91 rlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 78999999998883332 355677777889999999999999999986553210 0
Q ss_pred ----HHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCC------CCC---HHHH-----HHHHHHHHHcCChhHHHHHH
Q 009470 287 ----VYTYSIV---IDALCRCGQITRAHDVFAEMLEVGC------EPN---SITF-----NNLMRVHVKASRTEKVLQVY 345 (534)
Q Consensus 287 ----~~~~~~l---l~~~~~~g~~~~A~~~~~~m~~~~~------~~~---~~~~-----~~li~~~~~~g~~~~a~~~~ 345 (534)
..+|..+ ...+...|++.+|+++++...+.+. ..+ ...= .-+.-++-..|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1122222 2334567888888888887733210 111 1111 11233566788888888888
Q ss_pred HHHHHcCCCCChhhH----HHHHHHHHHcCChH----------------HHHHHH-------------------------
Q 009470 346 NQMKRLGCEADTITY----NFLIDCHCKDGKLE----------------DAIKVL------------------------- 380 (534)
Q Consensus 346 ~~~~~~g~~~~~~~~----~~li~~~~~~g~~~----------------~A~~~~------------------------- 380 (534)
....+.. .+|.... |.|+..-....-++ .+...+
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 8888765 3333221 11111100000000 000000
Q ss_pred HHHHHC--CCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----
Q 009470 381 NSMVRK--GCNPNASTFNMIFRCIS--KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKK----- 451 (534)
Q Consensus 381 ~~m~~~--~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~----- 451 (534)
++.... +..|.. .+..++..+. +.....+|.+++...-+....-.....-.+++.....|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 327 RELSASLPGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHhCCccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 000000 111222 2223332222 222355666666666554322234455667778888999999999998
Q ss_pred ---HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 452 ---EMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKC-LKPGS----SVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 452 ---~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
.+.+.+..|. +...++..+.+.++.+.|..++.++++.-. -.+.. .++..++..=.+.|+-++|..++++
T Consensus 406 ~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 406 WKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 5555544444 445566667777777767777766654210 01111 2233334444667999999999999
Q ss_pred HHHc
Q 009470 524 MVDR 527 (534)
Q Consensus 524 ~~~~ 527 (534)
+.+.
T Consensus 484 l~k~ 487 (652)
T KOG2376|consen 484 LVKF 487 (652)
T ss_pred HHHh
Confidence 9884
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.8e-06 Score=73.98 Aligned_cols=309 Identities=11% Similarity=0.044 Sum_probs=214.6
Q ss_pred CCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-H
Q 009470 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITV-D 184 (534)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~ 184 (534)
..+|..+..-+.....+...+++..||.-|..+.+. -+.+-.++..-...|...|+-..|+.-+.+..+.. ||- .
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ 107 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMA 107 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHH
Confidence 356777777777776666667788899988888753 12233355555678888999999988888887763 432 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHH------------HHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP--DKIA------------FSIVISILCRKRRASEAQSFFDSLKDKFEP 250 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~------------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 250 (534)
+...-...+.+.|.+++|..-|+...+....- .... ....+..+...|+...|+.+...+.+-.+.
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence 22223346789999999999999998764211 1111 122334456678999999999999998899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNL-- 328 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-- 328 (534)
|+..|..-..+|...|++..|+.-++...+..- -+..++..+-..+...|+.+.++...++..+. .||...+-..
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 999999999999999999999887777665432 25666667778888999999999999998876 4554433221
Q ss_pred -----------HHHHHHcCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009470 329 -----------MRVHVKASRTEKVLQVYNQMKRLGCEADT---ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394 (534)
Q Consensus 329 -----------i~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 394 (534)
+......++|.++++..+...+..-.... ..+..+-.++...|++.+|++...+..+.. +-|+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHH
Confidence 11234456666777776666655322112 233445566677788888888888877653 224777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 009470 395 FNMIFRCISKLGDVNGAHRMYGKMKDLK 422 (534)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 422 (534)
+.--..+|.-..+++.|+.-|+...+.+
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777778887788888888888877654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-06 Score=79.93 Aligned_cols=366 Identities=13% Similarity=0.086 Sum_probs=223.6
Q ss_pred hhhhhhccccCCCCChHHHHHHHHhhhc--ccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 009470 94 LSLGFSQISTAHSISPSTVRHVIEKSCG--VRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFI 171 (534)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 171 (534)
+..+...++.+..++|. .|||...+. +...+++..|+.--....+ -.+.-+..|+.....+.-.|++++|+.-|
T Consensus 18 ~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred HHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 33445555566677776 566644332 2222344444432222221 12334568999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHcC---CCCCHHHHHHHHHHHH----------hcC
Q 009470 172 DLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF------NRMEEYG---CAPDKIAFSIVISILC----------RKR 232 (534)
Q Consensus 172 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~------~~m~~~g---~~~~~~~~~~ll~~~~----------~~g 232 (534)
.+=.+.. +.+...++.+..++.... .+.+.| ..+...- .......|..++..+- ...
T Consensus 94 ~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 94 SEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 9887775 456677777777772111 011111 1111000 0001112222222211 111
Q ss_pred CHHHHHHHHHHhh------c-------cCCC----------------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 233 RASEAQSFFDSLK------D-------KFEP----------------------DVIVYTNLVRGWCRAGNISEAERVFRE 277 (534)
Q Consensus 233 ~~~~A~~~~~~~~------~-------~~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (534)
++..|.-.+.... . ...| -..-+..+.....+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1222222211100 0 0011 112245677888888899999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHH
Q 009470 278 MKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNL-------MRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 278 m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~~~~ 350 (534)
..+.. -+..-++....+|...|.+.+.....+...+.|.. ...-|+.+ ..+|.+.++++.++..|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 88764 35666777888899999998888888887776622 33333333 3356667788888888887655
Q ss_pred cCCCCChhh-------------------------HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009470 351 LGCEADTIT-------------------------YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 351 ~g~~~~~~~-------------------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 405 (534)
....|+... ...-.+.+.+.|++..|.+.|.+++++. +-|...|....-+|.+.
T Consensus 327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL 405 (539)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Confidence 433332221 1222456778999999999999999997 34789999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009470 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG 474 (534)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 474 (534)
|.+..|++--+..++.. ++....|..=..++.-..+++.|.+.|.+..+. .|+..-+..-+.-|..
T Consensus 406 ~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 99999999988888764 334455655566666778999999999999886 4554444333333333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-06 Score=77.79 Aligned_cols=398 Identities=12% Similarity=0.093 Sum_probs=250.9
Q ss_pred hHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH-
Q 009470 109 PSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS- 187 (534)
Q Consensus 109 ~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~- 187 (534)
..-...++.++- +..++.+|++....-.++. +.+....+.+...|....++..|-+.++.+-... |...-|.
T Consensus 10 EGeftaviy~lI---~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrl 82 (459)
T KOG4340|consen 10 EGEFTAVVYRLI---RDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRL 82 (459)
T ss_pred CCchHHHHHHHH---HHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHH
Confidence 344667776553 3345777887777666543 2366788889999999999999999999987764 3333332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI--LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
--...+.+.+.+.+|+++...|... ++...-..-+.+ ....+++..+..+.+++... .+..+.+.......+.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--Cccchhccchheeecc
Confidence 3456677899999999999888642 232222222222 23467888888888887632 2666777777788899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------------CH----------
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP-------------NS---------- 322 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~-------------~~---------- 322 (534)
|++++|.+-|+...+-+---....|+..+. ..+.|+++.|++...++++.|++. |+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 999999999999988654446678886664 556789999999999999998762 21
Q ss_pred -----HHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009470 323 -----ITFNNLMRVHVKASRTEKVLQVYNQMKRL-GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFN 396 (534)
Q Consensus 323 -----~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 396 (534)
..+|.-...+.+.|+++.|.+.+..|.-+ ....|+.|...+.-. -..+++.+..+-+.-+...+. .-..||.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHH
Confidence 12333334567889999999988888532 235677776655432 224566666776777766654 4567899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 009470 397 MIFRCISKLGDVNGAHRMYGKMKDLKC-EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGM 475 (534)
Q Consensus 397 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~ 475 (534)
.++-.||+..-++.|-+++.+-..... -.+...|+.|=......-..+++.+-++.+... +.-......+-+.--...
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~ 393 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHN 393 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence 999999999999999888865432211 123444443333233345677777776666542 000111111112211122
Q ss_pred CC---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 476 GH---WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 476 g~---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
++ ...|++-+++..+.. ..+.......+.+..++..++++|..-.+.
T Consensus 394 ~dd~a~R~ai~~Yd~~LE~Y-----LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 394 RDDEAIRKAVNEYDETLEKY-----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred ccHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 22 122333333333322 112223344566778899999999876653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6e-06 Score=75.33 Aligned_cols=385 Identities=13% Similarity=0.096 Sum_probs=223.1
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--------------C---------
Q 009470 124 HGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNV--------------E--------- 180 (534)
Q Consensus 124 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--------------~--------- 180 (534)
|.+++.+|+..+..+.+.. .++.+.+-.+.-.+.-.|.+.+|..+.....+... +
T Consensus 69 hLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred hhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3457899999999888744 34455555555555566777777766654332210 0
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 181 --ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI-SILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 181 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
.+..--.++.......-.+++|++++.+....+ |+-...|.-+ -+|.+..-++-+.++++.....++.++.+.|.
T Consensus 147 LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NL 224 (557)
T KOG3785|consen 147 LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNL 224 (557)
T ss_pred HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHH
Confidence 000111122222222334667777777776532 5555555433 34456666777777777766667777777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC--C--------C---------------------HHHHHHHHHHHHHcCCHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKMAGIQ--P--------N---------------------VYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~--p--------~---------------------~~~~~~ll~~~~~~g~~~~A 306 (534)
.+....+.=+-..|++-..++.+.+-. | + +..--.|+-.|.+.+++.+|
T Consensus 225 kacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA 304 (557)
T KOG3785|consen 225 KACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEA 304 (557)
T ss_pred HHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHH
Confidence 666666544434444444555443210 0 0 00011223345667777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHHcCChHHHHH
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASR-------TEKVLQVYNQMKRLGCEADT-ITYNFLIDCHCKDGKLEDAIK 378 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~ 378 (534)
..+.+++. +.++.-|..-.-.+...|+ ..-|.+.|+..-+.+..-|. ..-..+..++.-..++++.+.
T Consensus 305 ~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~ 380 (557)
T KOG3785|consen 305 ISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLT 380 (557)
T ss_pred HHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 77766654 2223222222222233332 23344444444444433332 234556666666777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 379 VLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTY-NILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 379 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
.++.+..--..-|...+ .+.++.+..|.+.+|+++|-++....++ |..+| ..|.++|.+++..+.|+.++-++..
T Consensus 381 YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-- 456 (557)
T KOG3785|consen 381 YLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-- 456 (557)
T ss_pred HHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--
Confidence 88777665333333333 4788899999999999999988766555 44555 5567789999999999877665532
Q ss_pred CCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 009470 458 VEPNVNTYR-ILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARP 533 (534)
Q Consensus 458 ~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 533 (534)
+.+..... .+.+-|.+.+++=-|-+.|+.+.. +.|+++.|..- .-....+|..+....-+|.|
T Consensus 457 -~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~---lDP~pEnWeGK---------RGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 457 -PSERFSLLQLIANDCYKANEFYYAAKAFDELEI---LDPTPENWEGK---------RGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---cCCCccccCCc---------cchHHHHHHHHHcCCCCCCc
Confidence 33444444 445578889998888888988766 57888887632 22333455555555444544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3e-06 Score=94.05 Aligned_cols=336 Identities=11% Similarity=0.058 Sum_probs=214.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHH
Q 009470 157 LAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC------APD--KIAFSIVISIL 228 (534)
Q Consensus 157 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~~~--~~~~~~ll~~~ 228 (534)
.+...|+++.+..+++.+.......+..........+...|++++|..+++.....-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445577777777766653221111222334455566788999999999988754210 111 11222333455
Q ss_pred HhcCCHHHHHHHHHHhhccCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEP-D----VIVYTNLVRGWCRAGNISEAERVFREMKMA----GI-QPNVYTYSIVIDALC 298 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~ll~~~~ 298 (534)
...|++++|...++......+. + ....+.+...+...|++++|...+++.... |. ......+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999886543222 2 234566777788899999999999888643 11 111234556677788
Q ss_pred HcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCC--ChhhHHHHHHHH
Q 009470 299 RCGQITRAHDVFAEMLEV----GCE--P-NSITFNNLMRVHVKASRTEKVLQVYNQMKRLG--CEA--DTITYNFLIDCH 367 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~--~~~~~~~li~~~ 367 (534)
..|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886543 211 1 22334555667788899999999998875431 112 233445566778
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNP-NASTF-----NMIFRCISKLGDVNGAHRMYGKMKDLKCEPN---TVTYNILMQMFA 438 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 438 (534)
...|++++|.+.+.++....... ....+ ...+..+...|+.+.|.+++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 89999999999998875431111 11111 1122444568899999999877654221111 112345667788
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 439 TSKSTDMVLKLKKEMEEN----EVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
..|+.++|...+++..+. |...+ ..+...+..++.+.|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 899999999999887653 32222 2456667778899999999999999998864
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-06 Score=75.78 Aligned_cols=313 Identities=12% Similarity=0.124 Sum_probs=188.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 171 IDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-KIAFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 171 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
|+-....+-+.++.-..-+...+...|++.+|+.-|....+.+ |+ -.++-.-...|...|+-..|+.-++++.+. +
T Consensus 26 ~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-K 102 (504)
T KOG0624|consen 26 LEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-K 102 (504)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-C
Confidence 3333333433455556677788888899999998888887632 33 233444455677788888888888877663 4
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHH------------HHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 250 PDVI-VYTNLVRGWCRAGNISEAERVFREMKMAGIQPN--VYTY------------SIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 250 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~------------~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
||-. .--.-...+.+.|.+++|..-|+...+....-+ ...+ ...+..+.-.|+...|++....++
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll 182 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL 182 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence 4432 233345567888999999999988887642111 1111 122334455677777777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009470 315 EVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 394 (534)
+.. +.|...|..-..+|...|++..|+.=++...+.. ..+..++--+-..+...|+.+.++..+++..+.+ ||...
T Consensus 183 Ei~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~ 258 (504)
T KOG0624|consen 183 EIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKL 258 (504)
T ss_pred hcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhh
Confidence 664 4466666666777777777777777666665554 3445555556667777777777777777777653 44322
Q ss_pred HHH----H---------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 395 FNM----I---------FRCISKLGDVNGAHRMYGKMKDLKCEPNTVT---YNILMQMFATSKSTDMVLKLKKEMEENEV 458 (534)
Q Consensus 395 ~~~----l---------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 458 (534)
.-. + +......+++.++.+-.+...+......... +..+-.++...+++.+|++...+..+..
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d- 337 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID- 337 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-
Confidence 111 1 1112334555555555555554432211222 2333445555667777777777766642
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+.|..++.--..+|.-...|++|+.-|+.+.+.
T Consensus 338 ~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 338 PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 233666666666776667777777777777663
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-08 Score=93.33 Aligned_cols=255 Identities=13% Similarity=0.093 Sum_probs=162.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKF-EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 304 (534)
+.+.-.|++..++.-.+ ..... ..+......+.+++...|+.+.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788888886665 32221 223445667788899999877554 3443332 566666655554444334555
Q ss_pred HHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITF-NNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
.++.-+++....+...+..++ ......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555544433323222233 23334566788999998887642 45667777889999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 384 VRKGCNPNASTFNMIFRCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE 459 (534)
Q Consensus 384 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 459 (534)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. +.++..+.+.+..++...|++++|.+++++..+.+ +
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8763 33444445444432 34689999999998664 45788888889999999999999999999887654 4
Q ss_pred CCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCCHH
Q 009470 460 PNVNTYRILITMYCGMGHW-NNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 460 p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~p~~~ 499 (534)
-+..++..+|.+....|+. +.+.+++.++... .|+..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~---~p~h~ 270 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS---NPNHP 270 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH---TTTSH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh---CCCCh
Confidence 4566777777777788877 6677888888774 35543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-08 Score=90.25 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=74.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH----HcC
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC----KDG 371 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g 371 (534)
.+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+.+ .| .+...+..++. ..+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344455555555555431 234444455555666666666666666655432 22 22222333322 223
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 009470 372 KLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKST-DMVLKLK 450 (534)
Q Consensus 372 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~l~ 450 (534)
.+.+|..+|+++.++ ..+++.+.+.+..+....|++++|.+++.+..+.+. -+..+...++.+....|+. +.+.+.+
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 466666666665544 334556666666666666666666666666554432 2444555555555555554 4455566
Q ss_pred HHHHH
Q 009470 451 KEMEE 455 (534)
Q Consensus 451 ~~m~~ 455 (534)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 66554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.9e-05 Score=78.09 Aligned_cols=346 Identities=12% Similarity=0.092 Sum_probs=234.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC--CCCHHH
Q 009470 177 RNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKF--EPDVIV 254 (534)
Q Consensus 177 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 254 (534)
..+..+...|..+.-+..+.|+++.+.+.|++.... .--....|..+...|...|.-..|..+++.-...- ++|...
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344457788999999999999999999999998754 23456778888889999999999999988754432 555666
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcC-
Q 009470 255 YTNLVRGWCR-AGNISEAERVFREMKMA--GI--QPNVYTYSIVIDALCRC-----------GQITRAHDVFAEMLEVG- 317 (534)
Q Consensus 255 ~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~m~~~~- 317 (534)
+-.....|.+ -+.+++++++-.+.... |. ......|..+.-+|... ....++++.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 6555555554 47788888777777652 11 12344555555555432 23467888888888775
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC-------
Q 009470 318 CEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK-GCN------- 389 (534)
Q Consensus 318 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~------- 389 (534)
-.|++..| +.--|...++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...+. |..
T Consensus 476 ~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred CCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 23333333 34456778999999999999998865788899999999999999999999999877654 210
Q ss_pred -----------CCHHHHHHHHHHHHh-----------------------cCChhHHHHHHHHH--------HhCC-----
Q 009470 390 -----------PNASTFNMIFRCISK-----------------------LGDVNGAHRMYGKM--------KDLK----- 422 (534)
Q Consensus 390 -----------~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~m--------~~~~----- 422 (534)
-...|...++..+-. .++..+|.+....+ +..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 011122222222210 00111111111111 0011
Q ss_pred ----C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 423 ----C--EPN------TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 423 ----~--~p~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
. .|+ ...|......+.+.+..++|...+.+..... +.....|......+...|++++|.+.|..+..
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 0 111 1234455667788888899998888887652 44556677777778889999999999999988
Q ss_pred cCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCC
Q 009470 491 EKCLKPG-SSVYEMVLQQLRRAGQLQKHEE--LVEKMVDRGF 529 (534)
Q Consensus 491 ~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~g~ 529 (534)
- .|+ +.....+...+.+.|+...|.. ++..+++.+.
T Consensus 713 l---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 713 L---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred c---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 4 454 5667889999999998888888 8888888764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-05 Score=80.04 Aligned_cols=332 Identities=14% Similarity=0.160 Sum_probs=195.3
Q ss_pred CCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CC
Q 009470 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTA-RPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE--IT 182 (534)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--~~ 182 (534)
+.++.++..||..-..++ ..+.+.+.. .-+...+|+..+..+.++...+-..+.+++++++.-.+.. -+
T Consensus 949 R~D~~LW~~VL~e~n~~r--------RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~ 1020 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYR--------RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN 1020 (1666)
T ss_pred ccChHHHHHHHhccChHH--------HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc
Confidence 468888999986543322 223333332 2233457888888899999999999999999988754322 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC-----------------------APDKIAFSIVISILCRKRRASEAQS 239 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------------------~~~~~~~~~ll~~~~~~g~~~~A~~ 239 (534)
...-|.|+-...+. +..+..+..+++...+. ..+..+.+.++. ..+.++.|.+
T Consensus 1021 ~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1021 RNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred hhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHH
Confidence 33344455444433 33445555555544331 111222222221 1233444444
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 240 FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCE 319 (534)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 319 (534)
+-++.. ....|..+..+-.+.|.+.+|++-|-+.. |...|.-+++...+.|.|++-.+++....+..-.
T Consensus 1097 fAe~~n-----~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1097 FAERCN-----EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred HHHhhC-----ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 433332 35677778888888888877777665432 5667777888888888888888777766665544
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIF 399 (534)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 399 (534)
|.+. +.+|-+|++.++..+.++.+ ..||......+.+-|...|.++.|.-+|... .-|..+.
T Consensus 1166 ~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La 1227 (1666)
T KOG0985|consen 1166 PYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLA 1227 (1666)
T ss_pred ccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHH
Confidence 4443 35677777777776655543 1466666666777777777777776666533 3466666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
..+...|++..|.+.-++. .+..||..+-.+|...+.+.-| +|-..++.....-..-++..|...|-++
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 7777777777776654433 2555666666666555444322 2222223334445556666666666666
Q ss_pred HHHHHHHHHH
Q 009470 480 NAYKYIREMI 489 (534)
Q Consensus 480 ~A~~~~~~~~ 489 (534)
+-+.+++..+
T Consensus 1297 ElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1297 ELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHhhh
Confidence 6666665543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7e-06 Score=82.64 Aligned_cols=240 Identities=17% Similarity=0.188 Sum_probs=158.6
Q ss_pred CHHHHHHHH--HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC--------C
Q 009470 147 SPDLYHEMI--NLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY-GC--------A 215 (534)
Q Consensus 147 ~~~~~~~li--~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~ 215 (534)
++.+-.+++ ..|..-|++|.|.+-.+.++.. .+|..|...|.+..+.+-|.-.+..|... |. .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 444555555 3456779999998777665543 58999999999988888777766666421 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 216 PDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVID 295 (534)
Q Consensus 216 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 295 (534)
++ .+-..+.-.....|.+++|+.+|++-+. |..|=..|...|.+++|+++-+.--+ +. =..||.....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAK 866 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHH
Confidence 22 2222233344677889999999887654 55666677788999999887654322 11 1245656666
Q ss_pred HHHHcCCHHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 009470 296 ALCRCGQITRAHDVFAEM----------LEVG---------CEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD 356 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~ 356 (534)
.+-..++++.|++.|++. .... -..|...|.-....+-..|+.+.|+.+|....+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 666778888888877653 1111 012444455555555667777777777766653
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
|-.+++..|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|.+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 456677777888888888876653 266677778888889999999998887764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-07 Score=89.79 Aligned_cols=239 Identities=15% Similarity=0.138 Sum_probs=183.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 249 EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNL 328 (534)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 328 (534)
+|--..-..+...+...|-..+|..+++++. .|.-++.+|+..|+..+|..+.....++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444455667888889999999999998775 4667888899999999999988888774 7888888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDV 408 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 408 (534)
.+......-+++|.++.++.... .-..+.....+.++++++.+.++.-.+.+ .....+|-....+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888765433 12222233345789999999999877764 23567888888888899999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 409 NGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
+.|.+.|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999888754 3356789999999999999999999999999877 556677888888888999999999999988
Q ss_pred HHcCCCCCCHHHHHHHHHHH
Q 009470 489 IEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 489 ~~~~~~~p~~~~~~~l~~~~ 508 (534)
.+.....-|..+...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 76443233444444444433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-05 Score=77.87 Aligned_cols=331 Identities=12% Similarity=0.170 Sum_probs=185.6
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYG--CAPDKIAF 221 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~ 221 (534)
.+++.|+.++.- .-..-+++.+...+.+++ -|.......+.++...+-+.+-+++++++.-.. +.-+...-
T Consensus 950 ~D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQ 1024 (1666)
T KOG0985|consen 950 SDPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQ 1024 (1666)
T ss_pred cChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhh
Confidence 467788877631 112234566666666544 356778888999999999999999999986322 11222333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------------------
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG------------------- 282 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------------------- 282 (534)
|.++-...+ -+..+..+..+++..-..|+ +.......+-+++|+.+|++....+
T Consensus 1025 nLLiLtAik-ad~trVm~YI~rLdnyDa~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~ef 1097 (1666)
T KOG0985|consen 1025 NLLILTAIK-ADRTRVMEYINRLDNYDAPD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEF 1097 (1666)
T ss_pred hhHHHHHhh-cChHHHHHHHHHhccCCchh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHH
Confidence 444433333 34555666666665432232 2233444455566666555432100
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 009470 283 --IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITY 360 (534)
Q Consensus 283 --~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 360 (534)
-.-....|..+..+-.+.|.+.+|++-|-+. -|+..|..+++...+.|.+++..+.+....+..-.|.. =
T Consensus 1098 Ae~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d 1169 (1666)
T KOG0985|consen 1098 AERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--D 1169 (1666)
T ss_pred HHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--h
Confidence 0002334555555555556666555544322 24555666666666666666666666555554433332 2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009470 361 NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS 440 (534)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (534)
..||-+|++.++..+-.+.+. -|+......+.+-|...|.++.|.-+|... ..|..|...+...
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHH
Confidence 455666666666555443331 255555566666666666666665555433 3355666666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 441 KSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEEL 520 (534)
Q Consensus 441 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 520 (534)
|++..|...-++. .+..||..+-.+|...+.+.-| +|...+ +-....-...++..|...|-+++...+
T Consensus 1234 geyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~-iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLN-IIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred HHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCce-EEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence 7777666544433 2557788777788777766544 222222 223444566677777777777777766
Q ss_pred HHHH
Q 009470 521 VEKM 524 (534)
Q Consensus 521 ~~~~ 524 (534)
++..
T Consensus 1302 ~Ea~ 1305 (1666)
T KOG0985|consen 1302 LEAG 1305 (1666)
T ss_pred HHhh
Confidence 6643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00015 Score=70.18 Aligned_cols=130 Identities=12% Similarity=0.208 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP-NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
+|...++...+...++.|..+|.+..+.+..+ +...+++++..|| .++.+-|.++|+--.++ +.-+..--...+..+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 45555555555566666666666666655444 4555566666555 35556666666654433 122233334555555
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPG--SSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
...++-..|..+|++.+... +.++ ..+|..+++.=..-|+++.+.++-+++..
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~-l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSV-LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHhCcchhHHHHHHHHHhcc-CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666652 3333 35566666666666666666666555543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.4e-05 Score=75.79 Aligned_cols=142 Identities=11% Similarity=0.051 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR-RASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
++..+-..+...++.++|+.+.+++.+.. +-+..+|+..-.++...| ++++++..++++....+.+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH
Confidence 44444445555566666666666666532 222334444444444444 3566666666655555555555555544444
Q ss_pred hcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 264 RAGNI--SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329 (534)
Q Consensus 264 ~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 329 (534)
+.|+. ++++.+++++.+...+ +..+|+.....+.+.|+++++++.++++++.+. -|...|+...
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~ 183 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRY 183 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHH
Confidence 44442 4455555555544322 455555555555555555555555555555542 2444444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.4e-06 Score=83.02 Aligned_cols=292 Identities=17% Similarity=0.183 Sum_probs=159.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.-...+..+...|+-++|-++- ... .--.+.|..|.+.|.+.+|......-.. +..|......+..++.
T Consensus 591 lk~sy~q~l~dt~qd~ka~elk----~sd-----gd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~ali 659 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAELK----ESD-----GDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALI 659 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhhc----ccc-----CccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHH
Confidence 4445556666677776665432 221 1112457778888888777765432222 2345555555555555
Q ss_pred hcCCHHHHHHHHHHhhcc-----------------------CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 230 RKRRASEAQSFFDSLKDK-----------------------FEPDVIVY-TNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
+..-+++|-.+|+++..- +|..+++. ......+...|+++.|..-|-+..
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~------ 733 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN------ 733 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh------
Confidence 544445555555444320 11111111 122223333444444444443321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
.....+.+......|.+|+.+++.+.... .-..-|..+...|...|+++.|.++|.+.- .++-.|.
T Consensus 734 ---~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~ 799 (1636)
T KOG3616|consen 734 ---CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAID 799 (1636)
T ss_pred ---hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHH
Confidence 12233455556677888888888777653 233456667778888888888888876542 2455677
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
.|.+.|++++|.++-.+... .......|.+-..-+-+.|++.+|+++|-.+. .|+ ..|++|-+.|..+.
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~dd 868 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDD 868 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchH
Confidence 78888888888887766543 34455666666666777777777777764443 233 23566667777666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIR 486 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 486 (534)
.+++.++-.... -..|...+..-|-..|+..+|...|-
T Consensus 869 mirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 869 MIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred HHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHH
Confidence 666655432110 11233344444445555555554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-05 Score=76.65 Aligned_cols=209 Identities=8% Similarity=0.004 Sum_probs=138.6
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009470 156 NLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234 (534)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 234 (534)
.++.+.++.++|+.+.+++.+.+ +-+..+|+.....+...| +++++++.++++.+.. +.+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445567778888888777765 345567776666666677 5788888888887654 34455666555455555553
Q ss_pred --HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCH----HH
Q 009470 235 --SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC---GQI----TR 305 (534)
Q Consensus 235 --~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~----~~ 305 (534)
++++.+++++.+..+.+..+|+...-.+...|+++++++.++++++.+.. |...|+.....+.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 56778887877777778888888888888888899999999988887654 566666665555443 222 45
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKA----SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCK 369 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 369 (534)
.++...+++... +-|...|+.+...+... ++..+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666666666654 34666777777666652 33455767666665543 3455666667776664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-05 Score=76.86 Aligned_cols=224 Identities=15% Similarity=0.202 Sum_probs=134.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CC-------CCCHHHHHHHHHHHHHcCC
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR-NV-------EITVDTFSILVRRYVRAGL 198 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~-------~~~~~~~~~li~~~~~~g~ 198 (534)
..+.|.+-...+. +..+|..|..++.+.++.|-|.-.+-.|... |. ..+...=..........|.
T Consensus 743 ~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 743 SMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred cHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 4555555555443 4569999999999999999988777666432 11 0111222223334456788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
.++|..+|++-++.+ .|=..|-..|.+++|.++-+.-. ++. -..||......+-..++++.|++.|++.
T Consensus 816 lEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~D-RiH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKD-RIH-LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcc-cee-hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 999999998887643 44456667888888888765421 111 2345666677777778888888777653
Q ss_pred H----------HCC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 009470 279 K----------MAG---------IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTE 339 (534)
Q Consensus 279 ~----------~~g---------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (534)
. ... -..|...|..-...+-..|+.+.|+.+|..... |-.+++..|-.|+.+
T Consensus 885 ~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 885 GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTD 955 (1416)
T ss_pred CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCch
Confidence 1 111 011333344444444456777777777766542 444555666666666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 340 KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 340 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
+|-++-++- -|......|.+.|-..|++.+|...|.+.
T Consensus 956 kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 956 KAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666554432 24445555666666666666666666544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-05 Score=79.53 Aligned_cols=167 Identities=18% Similarity=0.229 Sum_probs=95.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 304 (534)
+.+......+.+|+.+++.+..+ +.-...|..+...|...|+++.|+++|.+.- .++-.|.+|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdq-k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ-KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh-ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 33444556677777777766543 1223446677778888888888888876542 3455677788888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
.|.++-++... .......|.+-..-+-+.|++.+|.++|-.+. .|+. .|..|-+.|..+...++..+-.
T Consensus 809 da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 88877766542 23344555555555666777777766654332 2322 3455666666665555554332
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 385 RKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
.. .-..|...+..-+...|++..|+.-|
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 11 11223334444444455555554444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-06 Score=83.97 Aligned_cols=217 Identities=15% Similarity=0.118 Sum_probs=95.6
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 238 (534)
.+.|+...|.-.|+...+.+ |-+...|..|......+++-..|+..+++..+.. +-+..++-.|.-.|...|.-.+|.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 34555555555555555554 3345555555555555555555555555555532 223444555555555555555555
Q ss_pred HHHHHhhccCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 239 SFFDSLKDKFEP---------DVIVYTNLVRGWCRAGNISEAERVFREMK-MAGIQPNVYTYSIVIDALCRCGQITRAHD 308 (534)
Q Consensus 239 ~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 308 (534)
+.++.-...-++ +...-+. ..+.....+....++|-++. ..+..+|...+..|.-.|.-.|++++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 555443211000 0000000 01111111222233333332 22222344444444444555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD-TITYNFLIDCHCKDGKLEDAIKVLNS 382 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 382 (534)
.|+..+... +-|...||.|...+....+.++|+..|.+..+. .|+ +.+...|.-+|...|.+++|.+.|-.
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 555554443 224444555555555555555555555555443 222 22333334444555555555544443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-06 Score=84.97 Aligned_cols=218 Identities=11% Similarity=0.124 Sum_probs=143.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDA 376 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 376 (534)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 556777888877777777764 3366777777777777777777777777777764 45566777777778888877788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCChhHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009470 377 IKVLNSMVRKGCNPNASTFNMIF-----------RCISKLGDVNGAHRMYGKM-KDLKCEPNTVTYNILMQMFATSKSTD 444 (534)
Q Consensus 377 ~~~~~~m~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (534)
+++++.-+...++ |..+. ..+.....+....++|-++ .+.+-.+|......|.-.|.-.|+++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8777776554211 00000 0111111233344444444 33443466777777777777788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS-SVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
+|...|+.+.... +-|..+||.|...+....+.++|+..++++++ +.|+. .....|.-.|...|.+++|.+.+-.
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 8888888877753 55667788888888888888888888888877 45653 3444566677777888877776655
Q ss_pred HH
Q 009470 524 MV 525 (534)
Q Consensus 524 ~~ 525 (534)
++
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 44
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-05 Score=85.12 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEV-GCEP---NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
....|-..|......++.++|.++.++.... ++.. -...|.++++....-|.-+...++|+++.+. .....+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4566888888889999999999999998753 1111 2346777788778888888999999999875 34456788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN---TVTYNILMQMFA 438 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~ 438 (534)
.|...|.+.+.+++|.++++.|.++- ......|...+..+.+.++-+.|.+++.+..+. -|. .....-.++.-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 99999999999999999999999872 357788999999999999999999999998764 333 334455666677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS--SVYEMVLQQLRRAGQLQK 516 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 516 (534)
+.|+.+.+..+|+..... .+-....|+.+|+.=.++|+.+.+..+|++++..+ +.|.. ..|..++..=...|+-+.
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhHhHHHHHHHHHHHHhcCchhh
Confidence 899999999999998875 35567889999999999999999999999999977 65543 456677766666677666
Q ss_pred HHHHHHHHH
Q 009470 517 HEELVEKMV 525 (534)
Q Consensus 517 a~~~~~~~~ 525 (534)
++.+=.++.
T Consensus 1690 vE~VKarA~ 1698 (1710)
T KOG1070|consen 1690 VEYVKARAK 1698 (1710)
T ss_pred HHHHHHHHH
Confidence 655544443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-05 Score=80.34 Aligned_cols=130 Identities=13% Similarity=0.063 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYG-CAPDKIAFSIVISIL 228 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~ll~~~ 228 (534)
.|..|...|....+...|...|+...+.+ .-+...+....+.|++..+++.|..+.-..-+.. .......|..+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 56666666666666666666666666654 3355566666666666666666666522221110 000111122223334
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.+.++...|...|+....-.|.|...|..+..+|.+.|++..|.++|.+...
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 4556666666666655554555566666666666666666666666655544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=8.3e-06 Score=81.42 Aligned_cols=241 Identities=13% Similarity=0.127 Sum_probs=184.3
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009470 142 PEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAF 221 (534)
Q Consensus 142 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 221 (534)
++++|-...-..+.+.+.+.|-...|..+++++ ..|.-+|..|...|+..+|..+..+..+ -+||...|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly 460 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY 460 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH
Confidence 345556667778888999999999999999875 4677799999999999999998887776 36888999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
..+.+......-+++|.++++....+ +-..+.......++++++.+.|+.-.+.+ ..-..+|-.+..+..+.+
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 99888888777888999888876443 22333333445789999999998876653 225667878888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
+++.|.+.|....... +-+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-...+.|.+++|.+.+.
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999888764 3357789999999999999999999999998877 5566677777777889999999999998
Q ss_pred HHHHCCC-CCCHHHHHHHHHHH
Q 009470 382 SMVRKGC-NPNASTFNMIFRCI 402 (534)
Q Consensus 382 ~m~~~~~-~~~~~~~~~l~~~~ 402 (534)
++..... ..|..+...++...
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHH
Confidence 8765311 12444444444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=84.68 Aligned_cols=238 Identities=14% Similarity=0.163 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009470 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK-IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLV 259 (534)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 259 (534)
.+...|..|+..|...|++++|.++.+...+. .|+. ..|-.+...+...++.+++.-+ .++
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l 90 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------NLI 90 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh----------------hhh
Confidence 35678889999999999999999998876664 3443 3333333356666665554433 333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 009470 260 RGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTE 339 (534)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (534)
.......++.....+...|.+.+ -+-..+..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... +.+
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 34444455544555555555532 234467778888889999999999999998887 55788888888888888 889
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 340 KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 340 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
+|.+++.+.... +...+++.++..+|.++....+. +...+. ++.+.+.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHH
Confidence 998888887764 56667888888888888776322 222222 2222222
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 420 DL-KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 420 ~~-~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
.. |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 11 112233455556666777778888888888887764 335555555665554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-08 Score=58.94 Aligned_cols=32 Identities=41% Similarity=0.922 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 282 GIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 282 g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3e-05 Score=68.32 Aligned_cols=249 Identities=10% Similarity=0.071 Sum_probs=146.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
+-+.-.|.+..++..-+..... +.+...-.-+.++|...|.+..... ++.... .|.......+......-++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 3444567777766655544322 1345555556677777776654433 332222 3444444444444444455444
Q ss_pred HHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 306 AHD-VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 306 A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
.+. +.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 33344433333333333334456778888888887776522 22333333455667778888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 385 RKGCNPNASTFNMIFRCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP 460 (534)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p 460 (534)
+.. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..++++...+. .-
T Consensus 165 ~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred ccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 753 55666666666553 34577788888888663 36777788888888888888888888888887764 44
Q ss_pred CHHHHHHHHHHHHhCCCHHHH-HHHHHHHHH
Q 009470 461 NVNTYRILITMYCGMGHWNNA-YKYIREMIE 490 (534)
Q Consensus 461 ~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 490 (534)
+..+...+|-.-...|.-.++ .+.+.+...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 566666666555555654443 445555555
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-06 Score=74.87 Aligned_cols=189 Identities=15% Similarity=0.076 Sum_probs=129.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-HHH
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCA-PD-KIA 220 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~ 220 (534)
......+......+.+.|+++.|...|+++...... ....++..+...+...|++++|+..++++.+.... +. ..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 446677888888899999999999999988776421 11357788889999999999999999999865321 11 124
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009470 221 FSIVISILCRK--------RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSI 292 (534)
Q Consensus 221 ~~~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 292 (534)
+..+..++... |+.++|.+.|+.+....+.+...+..+..... .... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH------HH--------HHHHH
Confidence 44445555544 67888888888887766655544433322111 0000 00 01124
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEVGC--EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
+...|.+.|++++|+..+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55678888999999999998887631 223567888888999999999999988887764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.8e-06 Score=75.31 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK---IAFSIVISILCRKRRASEAQSFFDSLKDKF 248 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 248 (534)
....+..+...+...|++++|...|+++.+.. +.+. .++..+..++...|++++|...++++.+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 44556666666666666666666666665432 1111 244455555566666666666666655443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00092 Score=68.81 Aligned_cols=220 Identities=14% Similarity=0.119 Sum_probs=156.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINL--AGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
+.+.+|+.-.+.+.++.+.. .|..++.+ +.+.|+.++|..+++.....+. .|..+...+-..|...|+.++|.
T Consensus 23 ~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 45778888888888765433 34444444 4588999999999988877763 48899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC----------CHHHHHH
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG----------NISEAER 273 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~ 273 (534)
.+|++.... -|+......+..+|++.+.+.+-.+.--++-+.++.+...+=+++..+...- -..-|.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999999874 4778888889999999988887666555555555556665555555554332 1334666
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 274 VFREMKMAG-IQPNVYTYSIVIDALCRCGQITRAHDVFA-EMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 274 ~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
.++.+.+.+ ..-+..-...-...+-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 777776654 21122222233344557889999999994 4444433445555667778888999999999999999888
Q ss_pred C
Q 009470 352 G 352 (534)
Q Consensus 352 g 352 (534)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 6
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-05 Score=82.27 Aligned_cols=236 Identities=11% Similarity=0.107 Sum_probs=180.1
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 241 FDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA-GIQP---NVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|+++....|-....|-..+......++.++|.++.++.... ++.- -...|.++++.-..-|.-+...++|+++.+.
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 34444445666778888899999999999999999998753 1111 1345777777777778888889999999875
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHH
Q 009470 317 GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-PNASTF 395 (534)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ 395 (534)
- -.-..|..|...|.+.+..++|.++++.|.+.- ......|...+..+.+..+-++|..++.++.+.-.+ -.....
T Consensus 1527 c--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1527 C--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFI 1603 (1710)
T ss_pred c--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHH
Confidence 2 234467788999999999999999999998763 356788999999999999999999999998876322 134555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHH
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV--NTYRILITMYC 473 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~ 473 (534)
...+..-.+.|+.+.+..+|+.......+ -...|+.++++-.++|+.+.+..+|++....++.+.. ..|...+..=-
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 66677778899999999999998876433 5678999999999999999999999999998877654 34444444434
Q ss_pred hCCCHHH
Q 009470 474 GMGHWNN 480 (534)
Q Consensus 474 ~~g~~~~ 480 (534)
..|+-+.
T Consensus 1683 ~~Gde~~ 1689 (1710)
T KOG1070|consen 1683 SHGDEKN 1689 (1710)
T ss_pred hcCchhh
Confidence 4455433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.2e-05 Score=66.87 Aligned_cols=250 Identities=12% Similarity=0.095 Sum_probs=146.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 191 RRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
+-+.-.|++..++..-+..... +.+...-..+.++|...|..... ...++.+-.+.......+.......++.++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKEGKATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---ccccccccCChHHHHHHHHHHhhCcchhHH
Confidence 3444456666666554444322 13344444455666666654332 233333333333444444444444444444
Q ss_pred HH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 271 AE-RVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 271 A~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
-+ .+.+.+......-+......-...|++.|++++|++...... +......=..++.+..+.+-|.+.+++|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 334444443333333333444556788888888888776622 22222223445667778888888888888
Q ss_pred HcCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 009470 350 RLGCEADTITYNFLIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP 425 (534)
Q Consensus 350 ~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 425 (534)
+. .+..+.+-|..++.+ .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..+++........
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 64 355666666666543 45788888888888875 4678888888888888889999999999888876543
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 009470 426 NTVTYNILMQMFATSKST-DMVLKLKKEMEEN 456 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~-~~a~~l~~~m~~~ 456 (534)
++.+...++-.-...|.- +...+.+.+++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 566665555544444543 4445566666553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.6e-08 Score=57.64 Aligned_cols=32 Identities=41% Similarity=0.737 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 457 EVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 457 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
|+.||..+|+.+|.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.8e-05 Score=69.85 Aligned_cols=125 Identities=13% Similarity=0.163 Sum_probs=84.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 009470 370 DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF-ATSKS--TDMV 446 (534)
Q Consensus 370 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a 446 (534)
.++.+++...++...+.+. .+...|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4555666666666666542 3667777777777777777777777777776653 2566666666653 55565 4777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
.+++++..+.+ +-+...+..+...+.+.|++++|+..|+++++.. +|+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~--~~~~~ 179 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN--SPRVN 179 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcc
Confidence 77777777764 4456677777777777788888888887777754 44443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-05 Score=69.91 Aligned_cols=155 Identities=9% Similarity=0.121 Sum_probs=97.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH
Q 009470 190 VRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (534)
+..|...|+++.+....+.+.. |. ..+...++.+++...++......+.|...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 3456667776665544433221 10 01112455566666666666666777777777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 270 EAERVFREMKMAGIQPNVYTYSIVIDA-LCRCGQ--ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 270 ~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
+|...|++..+.... +...+..+..+ +...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777765432 55566666655 355565 477777777777765 3356667777777777777777777777
Q ss_pred HHHHcCCCCChhh
Q 009470 347 QMKRLGCEADTIT 359 (534)
Q Consensus 347 ~~~~~g~~~~~~~ 359 (534)
++.+.. +|+..-
T Consensus 169 ~aL~l~-~~~~~r 180 (198)
T PRK10370 169 KVLDLN-SPRVNR 180 (198)
T ss_pred HHHhhC-CCCccH
Confidence 777664 344433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.4e-05 Score=70.46 Aligned_cols=160 Identities=14% Similarity=0.034 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (534)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...|.+....-++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 45555666667766666666664432 23455556667777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
++++|..-|.+..+.... +...++.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777777765322 44556666666777777777777777776664 3355556666667777777777777665
Q ss_pred HHH
Q 009470 347 QMK 349 (534)
Q Consensus 347 ~~~ 349 (534)
+-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5e-05 Score=80.20 Aligned_cols=171 Identities=6% Similarity=0.053 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
+.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++..++.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 3455789999999999999999999999777664 34455666666688888887776665 3322
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 304 (534)
......++.-...+...+.. ...+..++..++.+|-+.|+.++|..+|+++.+... -|....|.+...|... +++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --hcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHH
Confidence 22222223222222222222 333455777788888888888888888888887763 3677788888888877 888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
+|.+++.+.... +...+++..+.++|.++...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 888887776643 44555666666666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00018 Score=74.58 Aligned_cols=86 Identities=16% Similarity=0.000 Sum_probs=36.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.|.+.++...|+..|+...+.. +-|...|..+..+|.+.|++..|.++|.+...--|.+...-.-..-..|..|.+.+|
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence 3444444444444444444332 223344444444555555555555555444332222222222233333444444444
Q ss_pred HHHHHHH
Q 009470 272 ERVFREM 278 (534)
Q Consensus 272 ~~~~~~m 278 (534)
+..+...
T Consensus 650 ld~l~~i 656 (1238)
T KOG1127|consen 650 LDALGLI 656 (1238)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=4e-05 Score=67.59 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 222 SIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 222 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
..+-..+...|+-+....+........+.|....+.++....+.|++.+|...+++.... -++|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 444555556666666666666655555556666666777777777777777777776554 2446667777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
++++|..-|.+..+.. .-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777776666653 2245556666666666777777777776666554 3355556666666666677766666655
Q ss_pred HH
Q 009470 382 SM 383 (534)
Q Consensus 382 ~m 383 (534)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00018 Score=63.15 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 196 AGLAAEAVHAFNRMEE---YG-CAPDKIA-FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~---~g-~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
..+.++.++++..+.. .| ..++..+ |..++-+....|+.+.|...++.+..+++.+..+-..-.-.+-..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 3456777777777642 23 4455543 44555566677888888888888777775555544444444555777788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
|+++++.+.+.+ +.|.++|.--+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888777765 335666666666666667766777777666654 245777777777777777777777777777765
Q ss_pred cCCCCChhhHHHHHHHHHHcC---ChHHHHHHHHHHHHC
Q 009470 351 LGCEADTITYNFLIDCHCKDG---KLEDAIKVLNSMVRK 386 (534)
Q Consensus 351 ~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 386 (534)
.. +.+...+..+...+.-.| +.+-|.++|.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 43 344444555555443333 455566666666654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-05 Score=80.12 Aligned_cols=184 Identities=9% Similarity=0.048 Sum_probs=129.9
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 143 EFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFS 222 (534)
Q Consensus 143 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 222 (534)
.+.++++.+-.+..+..+.|.+++|..+++...+.. +.+...+..++..+.+.+++++|+..+++..... +-+.....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 456778888888888888888888888888888775 4567778888888888888888888888888754 34566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 009470 223 IVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ 302 (534)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 302 (534)
.+..++.+.|++++|..+|+++....+.+..++..+...+.+.|+.++|...|++..+.. .+....|+.++ ++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~ 231 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HH
Confidence 777788888888888888888877656668888888888888888888888888887642 23444554433 23
Q ss_pred HHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHc
Q 009470 303 ITRAHDVFAEMLEVG----CEPNSITFNNLMRVHVKA 335 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~ 335 (534)
+..-..+++++.-.+ .+.......-+|.-+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 344445555554332 222334444455544443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0001 Score=77.16 Aligned_cols=213 Identities=11% Similarity=0.082 Sum_probs=157.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKS--RNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI 227 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 227 (534)
+...+=..+.+.+.+..+..-+-++.. +..+.+...+..|.....+.|.+++|..+++...+.. +-+......+...
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~ 129 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRG 129 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHH
Confidence 444444555555555554444443332 2445678999999999999999999999999998853 3345677888899
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 307 (534)
+.+.+++++|+..+++.....+.+....+.+..++.+.|++++|..+|+++...+. -+..++..+...+-+.|+.++|.
T Consensus 130 L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 130 VKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999998888999999999999999999999999999998432 35788888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCCChhhHHHHHHHHHHcC
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG----CEADTITYNFLIDCHCKDG 371 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g 371 (534)
..|+...+.. .+....|+..+ ++...-...++.+.-.+ .+........+|..|.+..
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 209 DVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred HHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 9999998764 34555665544 23444455666654433 3333445566666565443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.8e-05 Score=71.50 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=108.1
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 009470 157 LAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-KIAFSIVISILCRKRRAS 235 (534)
Q Consensus 157 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~ 235 (534)
.+...|+++.|+..++.+...- +.|...+....+.+.+.|+..+|.+.++++... .|+ ....-.+..+|.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 3446788888888888876653 567778888888888888888888888888774 355 555666778888888888
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 236 EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 236 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
+|+.+++......+.|...|..|.++|...|+..++.....++ |...|++++|+..+....+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHH
Confidence 8888888888778888888888888888888888777665543 4557888888888877766
Q ss_pred cC
Q 009470 316 VG 317 (534)
Q Consensus 316 ~~ 317 (534)
..
T Consensus 454 ~~ 455 (484)
T COG4783 454 QV 455 (484)
T ss_pred hc
Confidence 53
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00017 Score=69.27 Aligned_cols=148 Identities=16% Similarity=0.154 Sum_probs=112.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCh
Q 009470 330 RVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN-ASTFNMIFRCISKLGDV 408 (534)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~ 408 (534)
-.+...|++++|+..++.+...- +-|..........+.+.++.++|.+.++.+.... |+ ......+..++.+.|+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCCh
Confidence 34557888899999998887763 4445555566688889999999999999988874 44 56667778888999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 409 NGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
.+|++++++..... +-|...|..|.++|...|+..++..-..+ +|...|++++|+..+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 99999998887654 45888899999999999988777654443 466678999998888888
Q ss_pred HHcCCCCCCHHHH
Q 009470 489 IEEKCLKPGSSVY 501 (534)
Q Consensus 489 ~~~~~~~p~~~~~ 501 (534)
.+.. +.+...|
T Consensus 452 ~~~~--~~~~~~~ 462 (484)
T COG4783 452 SQQV--KLGFPDW 462 (484)
T ss_pred HHhc--cCCcHHH
Confidence 7764 3444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-05 Score=64.84 Aligned_cols=95 Identities=9% Similarity=-0.121 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009470 395 FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG 474 (534)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~ 474 (534)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...++...+.. +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666777788888888888777665 3366777777777888888888888888887754 5566777777777888
Q ss_pred CCCHHHHHHHHHHHHHc
Q 009470 475 MGHWNNAYKYIREMIEE 491 (534)
Q Consensus 475 ~g~~~~A~~~~~~~~~~ 491 (534)
.|++++|+..|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888888774
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-05 Score=63.99 Aligned_cols=101 Identities=8% Similarity=-0.095 Sum_probs=52.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR 232 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 232 (534)
.....+...|++++|...|+.....+ +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444555555555555555555443 3345555555555555555555555555555432 334445555555555555
Q ss_pred CHHHHHHHHHHhhccCCCCHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVY 255 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~ 255 (534)
+.++|...|+......+.+...|
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHH
Confidence 55555555555544444444444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0033 Score=64.94 Aligned_cols=225 Identities=11% Similarity=0.126 Sum_probs=149.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI--LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (534)
.....+++.+|++...++.+.. |+.. |..++.+ +.+.|+.++|..+++......+.|..|...+-.+|...|+.+
T Consensus 18 d~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence 3446788999999988876542 4432 2233333 468899999998888877655668899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-h---------h
Q 009470 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR-T---------E 339 (534)
Q Consensus 270 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~---------~ 339 (534)
+|..+|+..... .|+......+..+|.+.+++.+-.+.--+|-+. .+-+...+-.++..+.+.-. . .
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999998765 466777777778888888877655554444443 23355555566666554321 1 2
Q ss_pred HHHHHHHHHHHcC-CCCChhhHHHHHHHHHHcCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009470 340 KVLQVYNQMKRLG-CEADTITYNFLIDCHCKDGKLEDAIKVL-NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417 (534)
Q Consensus 340 ~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (534)
-|.+.++.+.+.+ -..+..-.-.-...+-..|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566655443 1111111222223345678899999988 4444444444555556777888888999998888888
Q ss_pred HHhCC
Q 009470 418 MKDLK 422 (534)
Q Consensus 418 m~~~~ 422 (534)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88876
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.6e-05 Score=62.01 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
....+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...++......+.+...+..+...+..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33444444444555555555554444432 22344444444444444555555555544444334444444444455555
Q ss_pred cCCHHHHHHHHHHHHH
Q 009470 265 AGNISEAERVFREMKM 280 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~ 280 (534)
.|++++|.+.|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0005 Score=60.41 Aligned_cols=164 Identities=18% Similarity=0.205 Sum_probs=107.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
+|..++-+....|+.+.|...++.+..+- +-+..+-..-...+-..|++++|+++++.+.+.+ +.|..++..-+...-
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 55666666667778888888887777663 4344444444444556677888888888777655 455666666666666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG---QITRA 306 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A 306 (534)
..|+--+|++-+....+.+..|...|.-+...|...|+++.|.-.++++.-... -+...+..+.+.+.-.| +++-+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP-FNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 677777777777777777777788888888888888888888777777765421 13334444444444433 45556
Q ss_pred HHHHHHHHHc
Q 009470 307 HDVFAEMLEV 316 (534)
Q Consensus 307 ~~~~~~m~~~ 316 (534)
.++|.+..+.
T Consensus 211 rkyy~~alkl 220 (289)
T KOG3060|consen 211 RKYYERALKL 220 (289)
T ss_pred HHHHHHHHHh
Confidence 6666666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.4e-05 Score=62.07 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
.....+...+...|++++|.+.|+.+....+.+...|..+...+.+.|++++|..++++..+.+ +.+...+..+...|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 4455556666677777777777777666556667777777777777777777777777766553 224555666666777
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 009470 299 RCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~ 316 (534)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.3e-05 Score=72.38 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (534)
..++..+...++++.|+++|+++.+.. |+ ....+++.+...++-.+|.+++.+.....+.+......-+..+.+.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 334444444555555666655555432 33 22234455555555555555555555544555555555555566666
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 267 NISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
+++.|+++.+++.+. .| +..+|..|..+|.+.|++++|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666665553 22 33456666666666666666665555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0083 Score=58.62 Aligned_cols=396 Identities=12% Similarity=0.146 Sum_probs=222.1
Q ss_pred HHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 009470 110 STVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSIL 189 (534)
Q Consensus 110 ~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 189 (534)
..+..+++.. +..+++++..+++.+.. .|+.++..|..-|....+.++++....+|.+....- .+.+.|..-
T Consensus 21 ~sw~~lire~----qt~~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 21 DSWSQLIREA----QTQPIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred HHHHHHHHHH----ccCCHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 3445555543 23478899999998875 477888999999999999999999999999988763 356777777
Q ss_pred HHHHHHc-CCH----HHHHHHHHHH-HHcCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHhhccCCC---
Q 009470 190 VRRYVRA-GLA----AEAVHAFNRM-EEYGCAPD-KIAFSIVISI---------LCRKRRASEAQSFFDSLKDKFEP--- 250 (534)
Q Consensus 190 i~~~~~~-g~~----~~A~~~~~~m-~~~g~~~~-~~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~~~~~--- 250 (534)
+..-.+. |+. +...+.|+-. .+.|+.+- -..|+..+.. +....+++...+++.++...--.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 6644432 222 2333444443 34454332 2334444432 23344566666677665432000
Q ss_pred ----CHHHHHHHHHH-----H--HhcCCHHHHHHHHHHHHH--CCCCCCHHH---------------HHHHHH-------
Q 009470 251 ----DVIVYTNLVRG-----W--CRAGNISEAERVFREMKM--AGIQPNVYT---------------YSIVID------- 295 (534)
Q Consensus 251 ----~~~~~~~li~~-----~--~~~g~~~~A~~~~~~m~~--~g~~p~~~~---------------~~~ll~------- 295 (534)
|-..|..=|.. + -+...+..|.++++++.. .|...+..+ |..+|.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11111111111 1 112234455555555432 121111100 111110
Q ss_pred ---------------------H--------------HHHcCC--------------HHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 296 ---------------------A--------------LCRCGQ--------------ITRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 296 ---------------------~--------------~~~~g~--------------~~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
. +...++ -+++..+++..+..-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111 233333333333222122233333
Q ss_pred HHHHHHHHcC---ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 009470 327 NLMRVHVKAS---RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP-NASTFNMIFRCI 402 (534)
Q Consensus 327 ~li~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~ 402 (534)
.+...--..- ..+.....++++...-...-..+|..+++.-.+..-+..|..+|.++.+.+..+ ++.++++++..+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3222111111 244455555555544323334567777777778888888888888888876665 677777788776
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHH
Q 009470 403 SKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV--NTYRILITMYCGMGHWNN 480 (534)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~ 480 (534)
| .++.+-|.++|+--...- .-++.--...+.-+...++-..+..+|+.....++.++. ..|..++.-=..-|+...
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 6 467788888887654431 223444456677777788888888888888877655553 678888887788888888
Q ss_pred HHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCHH
Q 009470 481 AYKYIREMIEEKC--LKPGSSVYEMVLQQLRRAGQLQ 515 (534)
Q Consensus 481 A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 515 (534)
++++-+++..... ..+....-..+++-|.-.+...
T Consensus 491 i~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 491 ILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred HHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 8888888777542 2233344455555555544443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00025 Score=59.26 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=8.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 009470 260 RGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~ 280 (534)
..+...|++++|...|+....
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHh
Confidence 333333444444444444333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00018 Score=69.74 Aligned_cols=120 Identities=16% Similarity=0.279 Sum_probs=58.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS 442 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 442 (534)
|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+..... +-+...+..-.+.+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3344444455555555555555542 22 22334444444555555555555554332 2234444444444555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
++.|..+.+++.+.. +-+..+|..|..+|.+.|++++|+-.++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555531 223345555555555555555555554433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00026 Score=59.18 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=55.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHH
Q 009470 405 LGDVNGAHRMYGKMKDLKCEPN---TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV--NTYRILITMYCGMGHWN 479 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 479 (534)
.++...+.+.++.+.+.... + ....-.+...+...|++++|...|+...+....++. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555555555543211 1 112222334555556666666666665554311111 12333445555666666
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 480 NAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 480 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
+|+..++..... ......+....+++.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE---AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc---chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666543221 22333455555666666666666666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.014 Score=58.62 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHHcCC
Q 009470 128 LLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR-NVEI--------TVDTFSILVRRYVRAGL 198 (534)
Q Consensus 128 ~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~ 198 (534)
+++|.+|.+ + .|.+..|..+.+...+.-.++.|...|-+...- |++. +...-.+=+.+ --|.
T Consensus 679 ledA~qfiE----d---nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~ 749 (1189)
T KOG2041|consen 679 LEDAIQFIE----D---NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGE 749 (1189)
T ss_pred hHHHHHHHh----c---CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcc
Confidence 556666654 2 357889999999999989999999888776543 3321 11111122222 2488
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK--FEPDVIVYTNLVRGWCRAGNISEAERVFR 276 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 276 (534)
+++|.++|-+|.++. ..+..+.+.|++-...++++.-..+ ...-..+|+.+...+.....|++|.+.|.
T Consensus 750 feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988776543 3455566677776666665542211 11123556667666666666776666665
Q ss_pred H
Q 009470 277 E 277 (534)
Q Consensus 277 ~ 277 (534)
.
T Consensus 821 ~ 821 (1189)
T KOG2041|consen 821 Y 821 (1189)
T ss_pred h
Confidence 4
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.4e-06 Score=49.18 Aligned_cols=33 Identities=42% Similarity=0.895 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.7e-05 Score=47.85 Aligned_cols=33 Identities=36% Similarity=0.602 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD 217 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 217 (534)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.9e-05 Score=47.29 Aligned_cols=33 Identities=33% Similarity=0.610 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP 216 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 216 (534)
.+|+.++.+|++.|+++.|.++|+.|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777778888888888888888777777765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=2e-05 Score=47.16 Aligned_cols=32 Identities=38% Similarity=0.704 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00029 Score=68.63 Aligned_cols=123 Identities=16% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 009470 213 GCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK---FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYT 289 (534)
Q Consensus 213 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 289 (534)
+.+.+......+++.+....+++.+..++.+.... ...-..|..++++.|.+.|..++++.+++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777788888887777643 222234556889999999999999999988888899999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA 335 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 335 (534)
+|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888777666777777777766665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.004 Score=58.75 Aligned_cols=240 Identities=13% Similarity=0.061 Sum_probs=112.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-KIAFSIVISILCRKR 232 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g 232 (534)
....+.+..++..|+..+....+.. +.+...|..-...+...|++++|.--.+.-.+. ++. .......-+++...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhH
Confidence 3445556666666666666666554 334555555555666666666665555444332 111 112222333333333
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI-QPNVYTYSIV-IDALCRCGQITRAHDVF 310 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l-l~~~~~~g~~~~A~~~~ 310 (534)
+..+|.+.++ +...| ....|+..++....... +|...++..+ ..++.-.|++++|...-
T Consensus 132 ~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 132 DLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 3333433333 11111 11222222333322221 1333333333 24455677888887777
Q ss_pred HHHHHcCCCCCHHHHHHHHH--HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH-------------HHHHcCChHH
Q 009470 311 AEMLEVGCEPNSITFNNLMR--VHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID-------------CHCKDGKLED 375 (534)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~-------------~~~~~g~~~~ 375 (534)
-..++.. ....+...++ ++.-.++.+.+..-|++.+..+ |+...-..+-. -..+.|++.+
T Consensus 193 ~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 193 IDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 7666553 1222333333 3334667777777777777653 44333222111 1134455555
Q ss_pred HHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 376 AIKVLNSMVRK---GCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 376 A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
|.+.|.+.+.. +..++...|........+.|+.++|+.--++..+
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 55555555543 2233444444444455555555555555554443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=68.99 Aligned_cols=124 Identities=14% Similarity=0.123 Sum_probs=101.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009470 317 GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL--GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394 (534)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 394 (534)
+.+.+...+..+++.+....+.+.+..++.+.... ....-..|..++|+.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44667778888888888888888899988888765 2333455667999999999999999999999889999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009470 395 FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS 440 (534)
Q Consensus 395 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (534)
+|.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999888777666777777666666655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00038 Score=52.73 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=38.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (534)
+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|.+.++......+.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 3444444444555554444444322 112233334444444444444444444444333333334444444444444444
Q ss_pred HHHHHHHHHH
Q 009470 269 SEAERVFREM 278 (534)
Q Consensus 269 ~~A~~~~~~m 278 (534)
++|...+.+.
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 4444444444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00038 Score=52.73 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Q 009470 431 NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR 510 (534)
Q Consensus 431 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 510 (534)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHH
Confidence 334445555566666666666555432 2233445555555555666666666666655543 2233455555556666
Q ss_pred cCCHHHHHHHHHHHHH
Q 009470 511 AGQLQKHEELVEKMVD 526 (534)
Q Consensus 511 ~g~~~~a~~~~~~~~~ 526 (534)
.|+.++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.01 Score=54.18 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDT---FSILVRRYVRAGLAAEAVHAFNRMEEY 212 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (534)
++..+......+.+.|++++|.+.|+.+..... -+... .-.++.++.+.|++++|+..+++..+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 344444455555667888888888888776532 22222 245566777788888888888887764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00093 Score=53.49 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=7.7
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 009470 190 VRRYVRAGLAAEAVHAFNRM 209 (534)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m 209 (534)
+..+.+.|++++|.+.|+++
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~ 28 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAF 28 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00072 Score=54.17 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNV--EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC--APDKIAFSIV 224 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~l 224 (534)
+++......+.+.|++++|.+.|+.+..... +.....+..+...+.+.|++++|++.|+.+..... ......+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4667778888899999999999999887642 12245677788999999999999999999876431 1124567777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
..++.+.|+.++|.+.++++....+.+..+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 778888899999999988888776666655544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00046 Score=64.63 Aligned_cols=131 Identities=8% Similarity=0.049 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK-LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQM 436 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 436 (534)
.+|..+++..-+.+..+.|..+|.++.+.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777776432 2233344433333222 34555577777766553 23456666666676
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNV---NTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+...|+.+.|..+|+..... +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654 22222 36666666666667777777777666663
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0048 Score=58.04 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLM 174 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m 174 (534)
+.|......|-..|++++|.+.|.+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHH
Confidence 35555556666666666666666553
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.047 Score=55.66 Aligned_cols=358 Identities=13% Similarity=0.147 Sum_probs=203.4
Q ss_pred CCCHHHHHHHHHHH------HccCChHHHHHHHHHHH--------hCCCCCCHHHHH-----HHHHHHHHcCCHHHHHHH
Q 009470 145 VHSPDLYHEMINLA------GKVRQFDLAWHFIDLMK--------SRNVEITVDTFS-----ILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 145 ~~~~~~~~~li~~~------~~~~~~~~A~~~~~~m~--------~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~ 205 (534)
...|+....|+++. .+..++++-.++..+++ ..|++.+..-|. .++..+...+.+..|+++
T Consensus 380 ef~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQv 459 (829)
T KOG2280|consen 380 EFQPEEQKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQV 459 (829)
T ss_pred ccCHHHHHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHH
Confidence 34455555555432 34456666655554432 347777766664 567778888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRR---ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
-..+...-..- ..+|.....-+.+..+ .+.+..+-+++.... -....|..+++-...+|+.+-|.++++.=...+
T Consensus 460 a~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~ 537 (829)
T KOG2280|consen 460 AKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSG 537 (829)
T ss_pred HHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCcc
Confidence 88775322222 5677777777776632 222333333333321 356778888998999999999988876422221
Q ss_pred CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHH--------HHHHcCChh
Q 009470 283 IQ----PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG-----------CEPNSITFNNLMR--------VHVKASRTE 339 (534)
Q Consensus 283 ~~----p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~~~~~li~--------~~~~~g~~~ 339 (534)
.. .+..-+...+.-..+.|+.+-...++-.+.+.- .+.....|.-+++ .+.+.++-.
T Consensus 538 ~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~ 617 (829)
T KOG2280|consen 538 EQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH 617 (829)
T ss_pred chhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccch
Confidence 11 112223444555566777776666665554321 0111111211111 001111111
Q ss_pred HHHHHH--HHHHHcC-CCCChhhHHHHHHHHHHcCChH---HH-------HHHHHHHHHC-CCCCCHHHHHHHHHHHHhc
Q 009470 340 KVLQVY--NQMKRLG-CEADTITYNFLIDCHCKDGKLE---DA-------IKVLNSMVRK-GCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 340 ~a~~~~--~~~~~~g-~~~~~~~~~~li~~~~~~g~~~---~A-------~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~ 405 (534)
++..-| +...... +.+-........+.+.+..... +| +++.+.+... |......+.+--+.-+...
T Consensus 618 ~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~ 697 (829)
T KOG2280|consen 618 QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILI 697 (829)
T ss_pred hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHc
Confidence 111111 1100000 0111112223333444433311 11 1122222221 3333444556666667788
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
|+..+|.++-.+.+ .||...|..-+.+++..+++++-+++-+.+.. ..-|.-++.+|.+.|+.+||.+++
T Consensus 698 g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 698 GQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred cchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhh
Confidence 99999999888776 58999999999999999999988777665542 345778889999999999999988
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 486 REMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
-+.-. . ...+.+|.+.|++.+|.++.-+-
T Consensus 768 prv~~---l-------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 768 PRVGG---L-------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccCC---h-------HHHHHHHHHhccHHHHHHHHHHh
Confidence 65422 1 15678888889999888765543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00048 Score=52.61 Aligned_cols=78 Identities=19% Similarity=0.377 Sum_probs=50.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGI-QPNVYTYSIVIDALCRCG--------QITRAHDVFAEMLEVGCEPNSITFNN 327 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (534)
..|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|++|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777777666542 23345566666666666666666666
Q ss_pred HHHHHHH
Q 009470 328 LMRVHVK 334 (534)
Q Consensus 328 li~~~~~ 334 (534)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=64.35 Aligned_cols=89 Identities=13% Similarity=-0.009 Sum_probs=53.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
..+...|++++|++.|+++++... -+...|..+..+|...|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 334455666666666666665442 245555566666666666666666666666542 334555666666666666666
Q ss_pred HHHHHHHHHHH
Q 009470 480 NAYKYIREMIE 490 (534)
Q Consensus 480 ~A~~~~~~~~~ 490 (534)
+|+..|+++++
T Consensus 88 eA~~~~~~al~ 98 (356)
T PLN03088 88 TAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHH
Confidence 66666666666
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00051 Score=62.07 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=57.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
+.+.+++++|+..|.+.++.... |.+.|..-..+|++.|.++.|++--+..+..+. -...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHH
Confidence 55566666666666666665422 555556666666666666666666666555431 1345566666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHH
Q 009470 447 LKLKKEMEENEVEPNVNTYR 466 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~ 466 (534)
++.|++..+ +.|+..+|.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 666666655 355555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.001 Score=62.35 Aligned_cols=128 Identities=9% Similarity=0.130 Sum_probs=51.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR-AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
|-.++....+.+..+.|+.+|.+..+.+ ..+..+|......-.+ .++.+.|.++|+...+. +..+...|...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 3334444444444445555554444322 1222333333222112 33333344444444332 2334444444444444
Q ss_pred hcCCHHHHHHHHHHhhccCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDV---IVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+.|+.+.|..+|++.....+.+. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444443322222 3444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=57.06 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAP--DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
...|..+...+...|++++|+..|++.......+ ...++..+...+...|+.++|++.+++.....+.....+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3455556666666666666666666665432111 12355556666666666666666666655444444444555554
Q ss_pred HHH-------hcCCHHHHHHHHH
Q 009470 261 GWC-------RAGNISEAERVFR 276 (534)
Q Consensus 261 ~~~-------~~g~~~~A~~~~~ 276 (534)
.+. +.|++++|+..++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 444 4455554444333
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00085 Score=51.30 Aligned_cols=74 Identities=19% Similarity=0.365 Sum_probs=36.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcC--------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLGC-EADTITYNFLIDCHCKDG--------KLEDAIKVLNSMVRKGCNPNASTFNMIF 399 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 399 (534)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555544332 1223344445555555555555555555
Q ss_pred HHH
Q 009470 400 RCI 402 (534)
Q Consensus 400 ~~~ 402 (534)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.4e-05 Score=44.09 Aligned_cols=29 Identities=41% Similarity=0.886 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.011 Score=53.92 Aligned_cols=54 Identities=7% Similarity=0.146 Sum_probs=28.0
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVY---TNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
+...|++++|.+.|+.+....|-+.... -.++.++.+.+++++|...+++..+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445555555555555555444333332 23445555556666666666555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.002 Score=53.18 Aligned_cols=99 Identities=9% Similarity=-0.009 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 392 ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
....-.+...+...|++++|.++|+.+..... -+..-|-.|.-++-..|++++|+..+....... +-|...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34444555667788888888888888776543 356667777777778888888888888887765 4567777778888
Q ss_pred HHhCCCHHHHHHHHHHHHHcC
Q 009470 472 YCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+...|+.+.|.+.|+.++...
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 888888888888888887754
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0042 Score=53.59 Aligned_cols=88 Identities=11% Similarity=0.091 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD--KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
.+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 444455555555555555555555543321111 234445555555555555555555555444444455555555555
Q ss_pred HhcCCHHHHH
Q 009470 263 CRAGNISEAE 272 (534)
Q Consensus 263 ~~~g~~~~A~ 272 (534)
...|+...+.
T Consensus 117 ~~~g~~~~a~ 126 (172)
T PRK02603 117 HKRGEKAEEA 126 (172)
T ss_pred HHcCChHhHh
Confidence 5555544333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=53.83 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 440 SKSTDMVLKLKKEMEENEVE-PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHE 518 (534)
Q Consensus 440 ~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 518 (534)
.|+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|+.++++ .+.+ ..+......+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666654211 1333444456666666666666666665 2211 112233334456666666666666
Q ss_pred HHHHH
Q 009470 519 ELVEK 523 (534)
Q Consensus 519 ~~~~~ 523 (534)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=6.7e-05 Score=43.69 Aligned_cols=29 Identities=45% Similarity=0.773 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00018 Score=53.69 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=6.4
Q ss_pred HHHHHhcCCHHHHHHHH
Q 009470 259 VRGWCRAGNISEAERVF 275 (534)
Q Consensus 259 i~~~~~~g~~~~A~~~~ 275 (534)
..++.+.|++++|++++
T Consensus 65 a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp HHHHHHTT-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH
Confidence 33344444444444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0055 Score=50.61 Aligned_cols=96 Identities=9% Similarity=0.021 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF 437 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (534)
...-.+..-+...|++++|.++|+.+...++. +..-|..|..++...|++++|+..|.......+ -|+..+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 34444555567778888888888877776533 556666777777778888888888887777663 4677777777778
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009470 438 ATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~m~~ 455 (534)
...|+.+.|.+.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888887776655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.07 Score=50.29 Aligned_cols=286 Identities=13% Similarity=0.086 Sum_probs=166.5
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG--WCRAGNISEAERVFREMKMAGIQPNVYT--YSIVIDALCRCGQITR 305 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~~~~ 305 (534)
..|+-..|.++-.+-...+..|....-.++.+ -.-.|+++.|.+-|+.|.+. |.... ...|.-.-.+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35666667666665544444454444444433 34467888888888888752 22211 1122222345677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCChhh--HHHHHHHHH---HcCChHHHHHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG-CEADTIT--YNFLIDCHC---KDGKLEDAIKV 379 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~--~~~li~~~~---~~g~~~~A~~~ 379 (534)
|..+-++.-... +--.-.+...+...|..|+|+.|+++++.-.... +.++..- -..|+.+-. -.-+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 777777665543 2234456677777788888888888887655432 2233211 112222211 12345556665
Q ss_pred HHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 009470 380 LNSMVRKGCNPNAST-FNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN-E 457 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~ 457 (534)
-.+..+. .||..- -..-..++.+.|+..++-.+++.+-+... .+..+... .+.+.|+. ++.-++..... .
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP--HP~ia~lY--~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP--HPDIALLY--VRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC--ChHHHHHH--HHhcCCCc--HHHHHHHHHHHHh
Confidence 5555554 344322 22345677888888899899988887654 44333322 23344543 33333332210 1
Q ss_pred C-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC
Q 009470 458 V-EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA-GQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 458 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~ 530 (534)
+ +.+......+..+-...|++..|..--+...+ ..|....|..|.+.-... |+-.++..++.+.++.--.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 2 33556677777888888888888877777766 468888888888776554 8888888888887765333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0067 Score=48.23 Aligned_cols=105 Identities=19% Similarity=0.159 Sum_probs=66.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPD--KIAFSIVISILCRKRRASEAQSFFDSLKDKFEP---DVIVYTNLVRGWC 263 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~ 263 (534)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++....++. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45566677888888888888777765443 234555666777778888888888776665444 3344444555667
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDAL 297 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (534)
..|+.++|+.++-..... +...|.--|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 777888777777665432 333444444444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0056 Score=52.84 Aligned_cols=130 Identities=15% Similarity=0.195 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009470 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM 434 (534)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (534)
...+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+... -+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 34456666666777777777777777765432221 34566666666777777777777776665431 2344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCC
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQ 513 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 513 (534)
..+...|+...+..-++... +.+++|.++++++.+. .|+. |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~---~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRL---APNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhh---Cchh--HHHHHHHHHhcCc
Confidence 56666665554443332221 1256777777777663 3443 4445554444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.081 Score=50.25 Aligned_cols=109 Identities=17% Similarity=0.252 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
.+.+..+.-+...|+...|.++-.+.. .||...|...+.+++..+++++-.++... +. .+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHH
Confidence 345556677788899988888877664 58999999999999999999988776542 21 336788999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVE 522 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 522 (534)
.+.|+..+|..++.++ + +..-+..|.+.|++.+|.+..-
T Consensus 248 ~~~~~~~eA~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999888762 1 2345667778888888766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0029 Score=61.53 Aligned_cols=90 Identities=8% Similarity=-0.057 Sum_probs=52.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 191 RRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
..+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..++++....+.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34445566666666666665543 23445555555566666666666666666555555555566666666666666666
Q ss_pred HHHHHHHHHHC
Q 009470 271 AERVFREMKMA 281 (534)
Q Consensus 271 A~~~~~~m~~~ 281 (534)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.027 Score=53.02 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=79.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCA---PD--KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~---~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
....|...|++++|.+.|.+..+.... +. ...|......| +.+++++|.+.+ ...+..|.
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~--------------~~A~~~y~ 105 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY--------------EKAIEIYR 105 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH--------------HHHHHHHH
Confidence 455666677777777777665321100 00 01122222222 222444444333 33344555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcC
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC-GQITRAHDVFAEMLEV----GCEP--NSITFNNLMRVHVKAS 336 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g 336 (534)
..|++..|-+.+.++- ..|-.. |++++|++.|++..+. | .+ -...+..+...+.+.|
T Consensus 106 ~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 106 EAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred hcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 6666666555554443 234444 6777777777665432 2 11 1233445566677777
Q ss_pred ChhHHHHHHHHHHHcCCCC-----Ch-hhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 337 RTEKVLQVYNQMKRLGCEA-----DT-ITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~-----~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
++++|.++|+++....... +. ..|-..+-++...||...|.+.+++....
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777777765542211 11 11222333555566777777777766654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.057 Score=54.54 Aligned_cols=75 Identities=11% Similarity=0.025 Sum_probs=44.2
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC--APDKIAFSIVISILCRKRRASE 236 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~g~~~~ 236 (534)
+--|+|++|.++|-+|..++. .|..+.+.|+|-...++++.--. +. .--..+++.+...+.....+++
T Consensus 745 ~~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 745 AFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334889999999988777654 56666777777766666543110 10 0112345555555555555666
Q ss_pred HHHHHHH
Q 009470 237 AQSFFDS 243 (534)
Q Consensus 237 A~~~~~~ 243 (534)
|.+.|..
T Consensus 815 A~~yY~~ 821 (1189)
T KOG2041|consen 815 AAKYYSY 821 (1189)
T ss_pred HHHHHHh
Confidence 6555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0049 Score=55.89 Aligned_cols=99 Identities=13% Similarity=0.139 Sum_probs=70.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 191 RRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISE 270 (534)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 270 (534)
.-+.+.+++++|++.|.+..+.. +-|.+-|..-..+|++.|.++.|++-.+....-.+....+|..|..+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567778888888888877753 45666677777788888888888777777666555566777888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSI 292 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ 292 (534)
|++.|++..+ +.|+-.+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 8888777765 3566555543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.041 Score=55.03 Aligned_cols=202 Identities=14% Similarity=0.164 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHHcCChhHHHHH
Q 009470 270 EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFN-----NLMRVHVKASRTEKVLQV 344 (534)
Q Consensus 270 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~ 344 (534)
+...-++++++.|-.|+... +...++-.|++.||.++|.+--..+- -...|+ -...-+...|..++-..+
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 33444566666666666543 33445556666666666654221100 000010 012223333333333333
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH------HHHHCCC---CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 345 YNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN------SMVRKGC---NPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 345 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
.++-.+. .-+..--.+....+...|+.++|..+.- -+.+-+. ..+..+...+...+.+...+..|.++|
T Consensus 693 ~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF 770 (1081)
T KOG1538|consen 693 IRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIF 770 (1081)
T ss_pred HHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHH
Confidence 3222111 1111111223344455666666655432 1111111 224445555556666677777788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhCCCHHHHHHH
Q 009470 416 GKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVN-----------TYRILITMYCGMGHWNNAYKY 484 (534)
Q Consensus 416 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~A~~~ 484 (534)
..|-+. ..+++.....+++++|..+-+...+. .+|.. -|.-.-.+|-+.|+-.||.++
T Consensus 771 ~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~v 839 (1081)
T KOG1538|consen 771 LKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQV 839 (1081)
T ss_pred HHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHH
Confidence 877531 35677778888888888887766543 33321 112223456666666666666
Q ss_pred HHHHH
Q 009470 485 IREMI 489 (534)
Q Consensus 485 ~~~~~ 489 (534)
++++.
T Consensus 840 LeQLt 844 (1081)
T KOG1538|consen 840 LEQLT 844 (1081)
T ss_pred HHHhh
Confidence 66654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.012 Score=60.05 Aligned_cols=72 Identities=18% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 009470 425 PNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVY 501 (534)
Q Consensus 425 p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 501 (534)
.+...|..+.-.....|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++... .|...+|
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L---~P~~pt~ 489 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL---RPGENTL 489 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCchH
Confidence 355667766666666788888888888888763 57778888888888888888888888888874 4544443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.045 Score=46.09 Aligned_cols=155 Identities=8% Similarity=0.042 Sum_probs=102.6
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009470 330 RVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVN 409 (534)
Q Consensus 330 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 409 (534)
.+..+.=+.+...+-..+-. ...|+...-..|..++.+.|+..+|...|++....-+.-|....-.+.++....++..
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 33344444444433322222 2356777777788888888888888888888776655567777777888888888888
Q ss_pred HHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 009470 410 GAHRMYGKMKDLK---CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIR 486 (534)
Q Consensus 410 ~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 486 (534)
.|...++++.+.. -.|| +.-.+.+.+...|++.+|..-|+..... -|+...-......+.+.|+.++|..-+.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 8888888777643 1233 3445677788888888888888888775 5555554445556677777777665555
Q ss_pred HHHH
Q 009470 487 EMIE 490 (534)
Q Consensus 487 ~~~~ 490 (534)
++.+
T Consensus 218 ~v~d 221 (251)
T COG4700 218 AVVD 221 (251)
T ss_pred HHHH
Confidence 5544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.003 Score=54.68 Aligned_cols=104 Identities=21% Similarity=0.329 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHH-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009470 319 EPNSITFNNLMRVHVK-----ASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS 393 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 393 (534)
..+..+|..+++.|.+ .|..+=....++.|.+.|+.-|..+|+.|++.+=+ |.+- |...
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~ 107 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNF 107 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccH
Confidence 3456666666666654 34555666666677777777777777777766543 2211 1111
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK 441 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 441 (534)
+-.+..- .-.+-+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 108 -fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 -FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 1111110 11223445666666666666666666666666654443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0028 Score=54.82 Aligned_cols=105 Identities=18% Similarity=0.314 Sum_probs=65.3
Q ss_pred CCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 009470 354 EADTITYNFLIDCHCKD-----GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428 (534)
Q Consensus 354 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (534)
..+..+|..+++.|.+. |.++=....+..|.+-|+.-|..+|+.|++.+-+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 45566666666666533 4555555666666666666666666666665543 2221 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 429 TYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 429 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
.- .-.+.+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00 123456789999999999999999999999999977664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.014 Score=55.15 Aligned_cols=260 Identities=10% Similarity=0.052 Sum_probs=152.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~ 304 (534)
..+.+..++.+|+..+....+-++.+..-|..-+..+...|++++|.--.+.-++. ++. ...+.-.-.++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 46677778888888888887777778778888888888888888887666555443 222 224444555556666666
Q ss_pred HHHHHHHHHHHc---C-------------CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 009470 305 RAHDVFAEMLEV---G-------------CEPNSITFNNL-MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCH 367 (534)
Q Consensus 305 ~A~~~~~~m~~~---~-------------~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 367 (534)
+|.+.++.-... + -+|.-.++..+ ..++.-.|+.++|..+--...+.. ..+......-..++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccc
Confidence 776666633210 0 01112222222 134555677777777666666543 22222222222344
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHH---H----------HHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNM---I----------FRCISKLGDVNGAHRMYGKMKDLK---CEPNTVTYN 431 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---l----------~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 431 (534)
.-.++.+.|...|++..+.+ |+...-.. . ..-..+.|.+..|.+.|.+.+... ..++...|.
T Consensus 214 yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 55677788888888777764 33222111 1 112346777888888888776532 344555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 432 ILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 432 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
....+..+.|+..+|+.--++..+.. +. ...|..-..++...++|++|.+.++++.+..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666777788888887777766531 11 1122222334445677888888888777743
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0028 Score=59.64 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH----HcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHH
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMK----RLGCE-ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GC-NPNAS 393 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~----~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~ 393 (534)
.|..+.+.|.-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34445555555667777665544321 22211 12345666677777777777777766654322 21 12233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKD----LK-CEPNTVTYNILMQMFATSKSTDMVLKLKKEM 453 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 453 (534)
....+...|.-..++++|+..+.+-.. .+ ..-....|.+|..+|...|..++|+.+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 445566666666667777766654321 11 1123456667777777777777776655443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0066 Score=52.17 Aligned_cols=81 Identities=19% Similarity=0.135 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP--NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLM 329 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 329 (534)
...|..++..+...|++++|+..|++.......+ ...++..+...+...|++++|++.++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445666666666777777777777765542221 12356666666777777777777777666542 22334444444
Q ss_pred HHHH
Q 009470 330 RVHV 333 (534)
Q Consensus 330 ~~~~ 333 (534)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.051 Score=48.24 Aligned_cols=169 Identities=13% Similarity=0.178 Sum_probs=86.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLG--CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL- 405 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~- 405 (534)
...+...|++++|.+.|+.+.... -+--....-.++.++.+.|++++|...+++.++.-..-...-+...+.+.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 334455666666666666665542 11112334445566666666666666666666542211111122222222111
Q ss_pred ------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 406 ------------GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 406 ------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
+...+|.. .+..++.-|=...-..+|...+..+.+. .- ..--.+...|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHH
Confidence 11122222 3344455555555666666655555432 00 11123566789
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCCHHHHHH
Q 009470 474 GMGHWNNAYKYIREMIEEKCLKPGS----SVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~ 519 (534)
+.|.+..|..-++.+++.. |+. .....++.++.+.|..+.+..
T Consensus 153 ~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 9999999999999999975 433 344667788899998875543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.17 Score=48.79 Aligned_cols=96 Identities=8% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 009470 167 AWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 167 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 246 (534)
-+++=+++++. +.|+.+|-.||..+...|..++..+++++|..- .+--..+|..-+.+-...+++...+.+|.+-..
T Consensus 28 ~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 28 ELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 33555555554 678999999999999999999999999999753 344456777777777777889999999987554
Q ss_pred cCCCCHHHHHHHHHHHHhcC
Q 009470 247 KFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g 266 (534)
+ ..+...|...+..--+.+
T Consensus 105 k-~l~ldLW~lYl~YIRr~n 123 (660)
T COG5107 105 K-SLNLDLWMLYLEYIRRVN 123 (660)
T ss_pred h-hccHhHHHHHHHHHHhhC
Confidence 3 224667777666554443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.11 Score=46.48 Aligned_cols=141 Identities=11% Similarity=0.151 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM---- 434 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li---- 434 (534)
+.+.++.++...|.+.-...++.+.++...+.++.....+++.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666677777777777777776656677777777777777777777777777665433333433333332
Q ss_pred -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 009470 435 -QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEM 503 (534)
Q Consensus 435 -~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~ 503 (534)
..|.-.+++..|...+.+....+ +-|....|.-.-+..-.|+..+|++.++.|++. .|...+-+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~---~P~~~l~es 324 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ---DPRHYLHES 324 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc---CCccchhhh
Confidence 23445566777777777666543 334444444333444467777788887777763 455544443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.018 Score=58.59 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 322 SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
...|..+.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444444556666666666655553 35555555556666666666666666655554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.11 Score=46.32 Aligned_cols=130 Identities=13% Similarity=0.201 Sum_probs=74.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH-----H
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLI-----D 365 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~ 365 (534)
+.++..+.-.|.+.-.+..+.+.++...+.+......+.+.-.+.||.+.|...|++..+..-..|..+.+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34445555556666666677777666555566666777777777777777777777665443233333333332 2
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
.|.-.+++.+|...++++...+.. +....|.-.-+....|+..+|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455666666666666555422 4444444444455556666666666666654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0057 Score=57.64 Aligned_cols=263 Identities=16% Similarity=0.140 Sum_probs=120.5
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH--HHHC--CC-CCCHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPD----VIVYTNLVRGWCRAGNISEAERVFRE--MKMA--GI-QPNVYTYSIVIDAL 297 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~--g~-~p~~~~~~~ll~~~ 297 (534)
-+|+.|+......+|+...+-...| ..+|..|..+|.-.+++++|+++... .... |- .-...+...|...+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 4677888888888887765532223 23455666666666777777765421 1110 10 01223333444555
Q ss_pred HHcCCHHHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHHcCCh--------------------hHHHHHHHHHH---
Q 009470 298 CRCGQITRAHDVFAE----MLEVGCE-PNSITFNNLMRVHVKASRT--------------------EKVLQVYNQMK--- 349 (534)
Q Consensus 298 ~~~g~~~~A~~~~~~----m~~~~~~-~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~--- 349 (534)
--.|.+++|+-...+ ..+.|-. .....+..+...|...|+- +.|.+.|.+-.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 556677776654332 2222211 1233444455666555431 22233332211
Q ss_pred -HcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHH---
Q 009470 350 -RLGC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMVR----KGCN-PNASTFNMIFRCISKLGDVNGAHRMYGKMK--- 419 (534)
Q Consensus 350 -~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--- 419 (534)
+.|- -.....|..|.+.|.-.|++++|+...+.-.. -|-+ .....+..+..++.-.|+++.|.+.|+...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1110 01123344555555555566666554443221 1211 112344555555555666666666555432
Q ss_pred -hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 420 -DLKCE-PNTVTYNILMQMFATSKSTDMVLKLKKEMEE----NE-VEPNVNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 420 -~~~~~-p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
+.|-+ .....+.+|...|.-..++++|+..+.+-.. .+ ..-....+..|..++...|..++|+.+.+...
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22211 1223344455555555555555555433211 00 11233445555555555555555555544443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.034 Score=49.39 Aligned_cols=64 Identities=16% Similarity=0.178 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRN--VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY 212 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (534)
...-.....+...|++++|...|+.+.... .+-.....-.++.++.+.|++++|...+++..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555566777777777777777652 1223455666777777777777777777776653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.084 Score=44.52 Aligned_cols=134 Identities=11% Similarity=0.041 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHH
Q 009470 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC-NPNASTFNM 397 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 397 (534)
.|++..-..+..++.+.|+..+|...|.+...--+.-|......+.++....+++.+|...++++.+... .-++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5666666677777788888888888888777655566777777777788888888888888887776531 012234455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
+.+.+...|++.+|+.-|+..... .|+...-......+.+.|+.+++..-+.++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777888888888888887764 4555555555566777787776665444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=47.05 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=22.7
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.|++++|++.|+++....|.+..++..++.+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.002 Score=45.77 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 009470 462 VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG-QLQKHEELVEKMVD 526 (534)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 526 (534)
...|..+...+...|++++|+..|++.++.. +.+...|..+..++.+.| ++++|.+.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666643 234455666666666666 56666666666654
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.017 Score=45.96 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=61.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPN--TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN----VNTYRILITM 471 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~----~~~~~~li~~ 471 (534)
+..++-..|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++.... .|+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 45566678888888888888888775543 335556667778888888888888887764 233 2222223346
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 009470 472 YCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~ 490 (534)
+...|+.++|++.+-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6777888888887766554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0021 Score=45.09 Aligned_cols=54 Identities=13% Similarity=0.238 Sum_probs=25.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+...|++++|.+.++++.+.. +-+...+..+..++.+.|++++|..+|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555442 22344444444455555555555555555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.041 Score=55.05 Aligned_cols=217 Identities=11% Similarity=0.167 Sum_probs=123.6
Q ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHH-----HH
Q 009470 291 SIVIDALCRCGQ--ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYN-----FL 363 (534)
Q Consensus 291 ~~ll~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~-----~l 363 (534)
+..-++|.+-.+ +-+.+.-+++|.+.|-.|+.... ...++-.|++.+|-++|.+--..+ --...|+ -+
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~ 676 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDY 676 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHH
Confidence 333444444333 34455567788888877876543 334455666777766665432110 0001111 12
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH------HHhCCC---CCCHHHHHH
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRK--GCNPNASTFNMIFRCISKLGDVNGAHRMYGK------MKDLKC---EPNTVTYNI 432 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~------m~~~~~---~p~~~~~~~ 432 (534)
.+-+...|..++-..+.++-.+- +++. -.+....+...|+.++|..+..+ +.+.+. ..+..+...
T Consensus 677 aQE~~~~g~~~eKKmL~RKRA~WAr~~ke----PkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~ 752 (1081)
T KOG1538|consen 677 AQEFLGSGDPKEKKMLIRKRADWARNIKE----PKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL 752 (1081)
T ss_pred HHHHhhcCChHHHHHHHHHHHHHhhhcCC----cHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence 23344455544444443322111 1110 12234445567777777664321 122111 235566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH-----------HH
Q 009470 433 LMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS-----------VY 501 (534)
Q Consensus 433 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-----------~~ 501 (534)
+...+.+...+..|.++|..|-+. ..+++.....++|++|..+-+..-+ +.|+.. -|
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc---ccccccchHHHHhhhhhhH
Confidence 666777778888899999888653 3567788899999999998876655 344432 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 502 EMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 502 ~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
...-.+|.++|+..||.++++++..+.
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 445568899999999999999886543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.25 Score=47.04 Aligned_cols=109 Identities=12% Similarity=0.139 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFA 438 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 438 (534)
+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++-.++... +-.+.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445556667777777777765552 35777777778888888888766655332 113456777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
+.|+..+|..++..+ + +..-+..|.+.|++.+|.+...+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888877777776652 1 13445667777888777665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.026 Score=51.54 Aligned_cols=101 Identities=13% Similarity=0.152 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhccCCCCHHHHH
Q 009470 180 EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK---RRASEAQSFFDSLKDKFEPDVIVYT 256 (534)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 256 (534)
+-|...|-.|...|...|+++.|...|.+..+.. .++...+..+..++... ....++..+|+++....+.|+.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4566777777777777777777777777766542 34455555555444432 2344566667766666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6777777777777777777777665
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0023 Score=45.44 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMG-HWNNAYKYIREMIE 490 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~ 490 (534)
+...|..+...+...|++++|+..|++..+.. +-+...|..+..++.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45567777777777788888888887777753 345566777777777777 67888888777776
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0028 Score=44.89 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=24.5
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
+.|++++|.++|+.+.... +.+...+..+..+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555554443 23444444555555555555555555555444
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0032 Score=44.07 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=27.4
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.+.+.|++++|.+.|+++....+.+...+..+..++...|++++|..+|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555544444555555555555555555555555555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.011 Score=54.41 Aligned_cols=100 Identities=9% Similarity=0.012 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN--TVTYNILMQMFATSKSTDMVLKLKKEMEENE--VEPNVNTYRIL 468 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~~~~~~~l 468 (534)
..|...+..+.+.|++++|...|+.+.+...... ...+..+...|...|++++|...|+.+.+.- -+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555444566777777777777776532111 2455666777777777777777777776541 11123444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+..+...|++++|.++++++++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 556667777777777777777753
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0096 Score=47.83 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 457 EVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 457 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
...|+..+..+++.+|+..|++..|+++++...+..+++-+...|..|+.-....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999888888888898888755443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.044 Score=50.15 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS---KSTDMVLKLKKEMEENEVEPNVNTYR 466 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~l~~~m~~~~~~p~~~~~~ 466 (534)
-|...|..|..+|...|+...|..-|.+..+.. .++...+..+..++... ....++..+++++.... +-|.....
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 367778888888888888888888888777654 23556666666554433 23456777888887764 44566666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 467 ILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 467 ~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
.|...+...|++.+|...|+.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 67777888888888888888888753
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.4 Score=46.40 Aligned_cols=395 Identities=14% Similarity=0.159 Sum_probs=193.5
Q ss_pred cccCCCChHHHHHHHHHHHhCCC---CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 009470 121 GVRHGIPLLQVLSFFNWVTARPE---FVHSPD-LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRR--YV 194 (534)
Q Consensus 121 ~~~~~~~~~~al~~f~~~~~~~~---~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~ 194 (534)
.++..+...++-.+|..+..... +-...+ ..+.++++|.. ++.+.....+.+..+... . ..|-.+..+ +-
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~--s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-K--SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-C--chHHHHHHHHHHH
Confidence 34445566777777777765321 111112 23455566553 445555555555554421 1 234444333 34
Q ss_pred HcCCHHHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-----CCCCHHHH
Q 009470 195 RAGLAAEAVHAFNRMEEY--GCAP------------DKIAFSIVISILCRKRRASEAQSFFDSLKDK-----FEPDVIVY 255 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~--g~~~------------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ 255 (534)
+.|.+.+|++.+..-.+. +..+ |-..=+..+..+...|++.++..+++++... ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 677788888777655433 2211 1111244566777888888888888877653 33677778
Q ss_pred HHHHHHHHhcCC---------------HHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Q 009470 256 TNLVRGWCRAGN---------------ISEAERVFREMKMA------GIQPNVYTYSIVIDALCRC--GQITRAHDVFAE 312 (534)
Q Consensus 256 ~~li~~~~~~g~---------------~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~ 312 (534)
+.++-.+.+.-- ++.+.-...+|... .+.|.......++....-. .+..--+++++.
T Consensus 171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~ 250 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN 250 (549)
T ss_pred HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence 776655554311 11122222222111 1122222222222222111 111112222222
Q ss_pred HHHcCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHHHcCC----CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009470 313 MLEVGCEPNSIT-FNNLMRVHVKASRTEKVLQVYNQMKRLGC----EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 313 m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 387 (534)
-...-+.|+-.. ...+...+.+ +.+++..+-+.+....+ ..=..++..++....+.++...|.+.+.-+....
T Consensus 251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD 328 (549)
T ss_pred HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 222333444222 2223333332 34444443333322211 1123456666666677777777777666554332
Q ss_pred CCC-------------------CHHHHHH------------------------HH---HHHHhcCC-hhHHHHHHHHHHh
Q 009470 388 CNP-------------------NASTFNM------------------------IF---RCISKLGD-VNGAHRMYGKMKD 420 (534)
Q Consensus 388 ~~~-------------------~~~~~~~------------------------l~---~~~~~~g~-~~~A~~~~~~m~~ 420 (534)
... |...++. ++ .-+-+.|. -++|+++++.+.+
T Consensus 329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 110 1111111 11 11123343 5667777777765
Q ss_pred CCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHH--HHHhCCCHHHHHHHHHH
Q 009470 421 LKCEPNTVTYNILM----QMFAT---SKSTDMVLKLKKEMEENEVEPNV----NTYRILIT--MYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 421 ~~~~p~~~~~~~li----~~~~~---~g~~~~a~~l~~~m~~~~~~p~~----~~~~~li~--~~~~~g~~~~A~~~~~~ 487 (534)
.. .-|..+-|.+. +.|.. ...+.+-..+-+-+.+.|++|-. ..-|.+.. -+...|++.++.-+-.-
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 43 22433333322 12222 22333444444445566766633 33344433 34568999998777666
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 488 MIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 488 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
..+ +.|++.+|..+.-++....++++|.+.+.++.
T Consensus 488 L~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 488 LTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 666 67899999999888889999999998887653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.025 Score=52.09 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPD---VIVYTNLVRGWCRAGNISEAERVFREMKMAGI--QPNVYTYSIVID 295 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~ 295 (534)
|...+..+.+.|++++|...|+.+...+|.+ ..++..+...|...|++++|...|+.+.+.-. ......+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344455555555555544443333 23444455555555555555555555543210 011222333334
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 009470 296 ALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~ 316 (534)
.+...|+.++|.+.|+.+++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555554443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.47 Score=45.00 Aligned_cols=291 Identities=14% Similarity=0.142 Sum_probs=164.1
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 185 TFSILVRRYV--RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI--LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 185 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
.|..|-.++. -.|+-..|.++-.+-.+. +.-|...+..++.+ -.-.|+.+.|.+-|+.|.. |..+-..=++
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHH
Confidence 3444444443 345666666655544321 23344444444432 2345777777777777765 3333322222
Q ss_pred H----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHH-
Q 009470 261 G----WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG-CEPNSIT--FNNLMRVH- 332 (534)
Q Consensus 261 ~----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~- 332 (534)
+ .-+.|+.+.|.++-++.-+.-.. =...+...+...|..|+|+.|+++++.-.+.. +.+++.- -..|+.+-
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 2 23567777777766666543211 23456667777777788888887777654432 2233221 11122211
Q ss_pred --HHcCChhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009470 333 --VKASRTEKVLQVYNQMKRLGCEADTITY-NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVN 409 (534)
Q Consensus 333 --~~~g~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 409 (534)
.-..+...|...-.+..+. .||..-- -.-..++.+.|+..++-.+++.+.+....|+. .... ...+.|+
T Consensus 238 ~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~lY--~~ar~gd-- 309 (531)
T COG3898 238 MSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALLY--VRARSGD-- 309 (531)
T ss_pred HHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHHH--HHhcCCC--
Confidence 1122344555554444443 4553322 23346788999999999999999988544443 2222 2234443
Q ss_pred HHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHH
Q 009470 410 GAHRMYGKMKDL-KC-EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC-GMGHWNNAYKYIR 486 (534)
Q Consensus 410 ~A~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~ 486 (534)
.+..-+++.... .. +.+....-.+.++-...|++..|..--+.... ..|....|..|...-. ..|+-.++..++-
T Consensus 310 ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence 344434433221 11 23556666777888888998888776666655 3778888888777544 4599999999998
Q ss_pred HHHHc
Q 009470 487 EMIEE 491 (534)
Q Consensus 487 ~~~~~ 491 (534)
+.++.
T Consensus 388 qav~A 392 (531)
T COG3898 388 QAVKA 392 (531)
T ss_pred HHhcC
Confidence 88774
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.14 Score=42.67 Aligned_cols=58 Identities=19% Similarity=0.330 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 326 NNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
..++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 334444555555555555555555543 4455555555555555555555555555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.44 Score=45.89 Aligned_cols=76 Identities=9% Similarity=-0.039 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLEVG---CEPNSITFNNLMRVHVK---ASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
.++-.|....+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+......++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777888888887777642 11111111222334455 6777777777777555444666677766665
Q ss_pred HH
Q 009470 366 CH 367 (534)
Q Consensus 366 ~~ 367 (534)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.91 Score=46.82 Aligned_cols=321 Identities=10% Similarity=0.101 Sum_probs=187.8
Q ss_pred CCCCCHHHHH-----HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCC
Q 009470 143 EFVHSPDLYH-----EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLA--AEAVHAFNRMEEYGCA 215 (534)
Q Consensus 143 ~~~~~~~~~~-----~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~ 215 (534)
|.+.+.+-|. .+++-+...+.+..|+++-..+...-... ..+|......+.+..+. +++++..++=.+...
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 4555555443 45778888899999999988876553222 46777777777777432 233333333222222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------
Q 009470 216 PDKIAFSIVISILCRKRRASEAQSFFDSLKDK---F--EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG-------- 282 (534)
Q Consensus 216 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------- 282 (534)
.....|..+.+-....|+.+-|..+++.=... + --+..-+..-+.-..+.|+.+-...++-.+...-
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~ 584 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMT 584 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777899999999888743221 0 0122234455666677777777776666654420
Q ss_pred ---CCCCHHHHHHHHH--------HHHHcCCHHHHHHHHH--HHH----HcCCCCCHHHHHHHHHHHHHcCChh------
Q 009470 283 ---IQPNVYTYSIVID--------ALCRCGQITRAHDVFA--EML----EVGCEPNSITFNNLMRVHVKASRTE------ 339 (534)
Q Consensus 283 ---~~p~~~~~~~ll~--------~~~~~g~~~~A~~~~~--~m~----~~~~~~~~~~~~~li~~~~~~g~~~------ 339 (534)
.+.....|..+++ .+...++-.++...|. ... ..|..|+ .....+.+.+.....
T Consensus 585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ 661 (829)
T KOG2280|consen 585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKAL 661 (829)
T ss_pred HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHH
Confidence 1111122222221 1111122112221111 100 0121222 222333444433311
Q ss_pred ----HHHHHHHHHH-HcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009470 340 ----KVLQVYNQMK-RLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRM 414 (534)
Q Consensus 340 ----~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 414 (534)
+-+++.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+.. -||...|..-+.++...+++++-+++
T Consensus 662 ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 662 EDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 1122222222 12334444556666677888999999999888765 47888999999999999999987777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
-+.++ .+.-|.-.+.+|.+.|+.++|.+.+-+.... .-.+.+|.+.|++.+|.++--+
T Consensus 738 Akskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 738 AKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHH
Confidence 66554 2455778889999999999999988765321 1467789999999999876543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.44 Score=42.80 Aligned_cols=182 Identities=15% Similarity=0.168 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRN--VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY-GCAPDKIAFSIVI 225 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~ll 225 (534)
..|+..+ .-.+.|++++|.+.|+.+..+. -+-...+.-.++.++.+.+++++|+..+++..+. +-.|| ..|..-|
T Consensus 36 ~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~Yl 113 (254)
T COG4105 36 ELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYL 113 (254)
T ss_pred HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHH
Confidence 3455444 4457799999999999998763 2345677778888899999999999999998754 33333 3444445
Q ss_pred HHHHh-------cCCHHHHHHH---HHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 226 SILCR-------KRRASEAQSF---FDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVID 295 (534)
Q Consensus 226 ~~~~~-------~g~~~~A~~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 295 (534)
.+++. .+|...+.+. |+.+..++|-+..+- .|...+..+... . ...=..+.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~--------------dA~~~i~~~~d~---L-A~~Em~Iar 175 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAP--------------DAKARIVKLNDA---L-AGHEMAIAR 175 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchh--------------hHHHHHHHHHHH---H-HHHHHHHHH
Confidence 44442 1233333333 333334443322211 111111111110 0 000012345
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGCEPN---SITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
.|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|.+.|-.++|.+.-.-+...
T Consensus 176 yY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 176 YYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 566777777777777777665 1222 233444556677777777776665555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.014 Score=41.85 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=37.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
..|.+.+++++|.++++.+...+ +.+...+......+.+.|++++|.+.|++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566677777777777776653 445556666666777777777777777777764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0077 Score=43.97 Aligned_cols=64 Identities=22% Similarity=0.407 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKC-LK---PG-SSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
.+|+.+...|...|++++|+.+|+++++... .. |+ ..++..+...+...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555566666666666666665553210 11 11 23445555566666666666666665543
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1 Score=49.01 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=25.0
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 009470 240 FFDSLKDKFEPDVIVYTNLVRGWCRAG--NISEAERVFREMKM 280 (534)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 280 (534)
..+....+..|+ ...-.++..|.+.+ .+++|++...+...
T Consensus 779 ~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 779 AVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 333333445555 44556777788777 67777777777764
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.017 Score=41.41 Aligned_cols=60 Identities=12% Similarity=0.177 Sum_probs=51.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 469 ITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 530 (534)
-..|.+.+++++|+++++.+++.. +.+...+.....++.+.|++++|.+.++..++.+-.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356889999999999999999965 456677888899999999999999999999987543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.32 Score=40.59 Aligned_cols=85 Identities=6% Similarity=-0.027 Sum_probs=37.7
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009470 334 KASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHR 413 (534)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 413 (534)
..|++++|..+|.-+...+ .-+..-+..|..++-..+++++|...|......+. -|...+-....++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555554444333 22333334444444444555555555444433321 133333344444555555555555
Q ss_pred HHHHHHh
Q 009470 414 MYGKMKD 420 (534)
Q Consensus 414 ~~~~m~~ 420 (534)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.024 Score=47.34 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
.++..+...|++++|.++.+.+.... +.+...|..+|.+|...|+..+|.+.|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444444444444444444432 123444444444444444444444444443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.14 Score=42.64 Aligned_cols=89 Identities=10% Similarity=-0.108 Sum_probs=67.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
--+...|++++|..+|+-+.-.+. -+..-|..|..++-..+++++|+..+......+ .-|...+-....++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 345678999999999988876553 366667778888888889999999888776544 234444556677888889999
Q ss_pred HHHHHHHHHHH
Q 009470 480 NAYKYIREMIE 490 (534)
Q Consensus 480 ~A~~~~~~~~~ 490 (534)
.|+..|...++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988887
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.1 Score=43.21 Aligned_cols=70 Identities=9% Similarity=0.048 Sum_probs=30.3
Q ss_pred HHHhcCCHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDK----FEPDVIVYTNLVRGWCR---AGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (534)
.|....+++...++++.+..- ......+-...+-++.+ .|+.++|++++..+......++..+|..+...
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344455555555555554432 11122222233333444 45555555555554333333444454444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.18 Score=50.29 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=100.6
Q ss_pred HHHHccCChHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009470 156 NLAGKVRQFDLAWHFIDL-MKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234 (534)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~-m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 234 (534)
....-.|+++.+.++.+. -.-..+ .....+.++.-+.+.|.++.|+++-+.-. .-.....+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 334456778887666641 111112 24567888888889999999988753321 224456678999
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 235 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
+.|.++.+++. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+...
T Consensus 335 ~~A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 335 DIALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 98887765443 677899999999999999999998887653 5566777888888888888887777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 009470 315 EVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQ 347 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (534)
..| + ++....++.-.|+.++..+++.+
T Consensus 401 ~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 665 2 44555556666777777666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.96 Score=42.37 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=11.8
Q ss_pred HHhcCChhHHHHHHHHH
Q 009470 402 ISKLGDVNGAHRMYGKM 418 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m 418 (534)
+.+.++++.|.++|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45677778887777643
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.75 Score=40.83 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=100.7
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 009470 141 RPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIA 220 (534)
Q Consensus 141 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 220 (534)
.+++..-...|.....+|...++|++|...+.+..+- .+.+...|. - ..-++.|.-+.++|.+. .--...
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHH
Confidence 3455556678888889999999999999888776532 111111111 1 12233344444444331 112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCCCHHHHHHHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM---AG--IQPNVYTYSIVID 295 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g--~~p~~~~~~~ll~ 295 (534)
|+-....|...|..+.|-..+++... ..+..++++|+++|++... .+ ...-...|...-.
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 44455556666666665555554321 1112233333333333211 00 0111222333344
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCChhhHHHHHHHH
Q 009470 296 ALCRCGQITRAHDVFAEMLEV----GCEPN-SITFNNLMRVHVKASRTEKVLQVYNQMKRLG---CEADTITYNFLIDCH 367 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~ 367 (534)
.+.+..++++|-..+.+-... .-.++ -..|...|-.+.-..++..|.+.++.-.+.+ -..+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 455555555554433322111 00111 1234444555555666666666666643332 123445555555554
Q ss_pred HHcCChHHHHHHHH
Q 009470 368 CKDGKLEDAIKVLN 381 (534)
Q Consensus 368 ~~~g~~~~A~~~~~ 381 (534)
..|+.+++.+++.
T Consensus 239 -d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 239 -DEGDIEEIKKVLS 251 (308)
T ss_pred -ccCCHHHHHHHHc
Confidence 3456666555543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.82 Score=41.13 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 332 HVKASRTEKVLQVYNQMKRLG--CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
-.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.+++++|...+++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 346677777777777776542 1122344445556667777777777777777665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.39 Score=47.11 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHc-CCCCC-hhhHHHHHHHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009470 338 TEKVLQVYNQMKRL-GCEAD-TITYNFLIDCHCKD---------GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG 406 (534)
Q Consensus 338 ~~~a~~~~~~~~~~-g~~~~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 406 (534)
.+.|+.+|.+.... ...|+ ...|..+..++... .+..+|.++.+...+.+. -|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 35667777776621 12333 44555555444322 234455666666666653 36666666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN---VNTYRILITMYCGMGHWNNAYK 483 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~ 483 (534)
+++.|..+|++....+. ....+|......+.-.|+.++|.+.+++..+. .|. .......+..|+..+ .++|++
T Consensus 353 ~~~~a~~~f~rA~~L~P-n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHST-DIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 67777777777766541 13344444444555567777777777775543 232 223333344555543 466666
Q ss_pred HHHH
Q 009470 484 YIRE 487 (534)
Q Consensus 484 ~~~~ 487 (534)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 5543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.7 Score=44.08 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCChhHHH
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIV-IDALCRCGQITRAHDVFAEMLEVG---CEPNSITFNNLMRVHVKASRTEKVL 342 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~ 342 (534)
+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++..... .+.....+-.+.-.+.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 444555555555443 2343333222 223334455555555555433210 0111222233333444555555555
Q ss_pred HHHHHHHHc
Q 009470 343 QVYNQMKRL 351 (534)
Q Consensus 343 ~~~~~~~~~ 351 (534)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.86 Score=40.63 Aligned_cols=224 Identities=15% Similarity=0.157 Sum_probs=142.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHH
Q 009470 265 AGNISEAERVFREMKMAGIQ-PNVYTYSIVIDALCRCGQITRAHDVFAEMLEV-GCEPNSITFNNLMRVHVKASRTEKVL 342 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (534)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666654322 13566677777788888888888888777652 22445556666677777778888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHH-HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 343 QVYNQMKRLGCEADTITYNFLID-CHCKDGKLEDAIKVLNSMVRKGC--NPNASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
+.+.......... ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877654222 222222333 67788888888888888755321 1233334444444566778888888888777
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 420 DLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 420 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
..........+..+...+...++++.+...+...... .|+ ...+..+...+...|.++++...+.+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6432113566667777777777788888888777764 232 344444444444666778888777777764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.48 Score=37.66 Aligned_cols=140 Identities=11% Similarity=0.208 Sum_probs=80.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
..-.|.+++..+++.+.... .+..-+|-++--....-+-+-..+.++.+-. ..|.. .+|+....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHH
Confidence 34567778888888777765 2555566555544444444444444444322 22322 23444433
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
...+-.+ ..+....+..+..+...|+-+.-.++++++.+.+ .+++.....+..+|.+.|+..++.+++.++.+
T Consensus 76 i~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 76 IECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3333322 2244556667778888899888888888887643 68888888899999999999999999999999
Q ss_pred cCC
Q 009470 527 RGF 529 (534)
Q Consensus 527 ~g~ 529 (534)
+|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 886
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.4 Score=42.80 Aligned_cols=127 Identities=14% Similarity=0.260 Sum_probs=80.7
Q ss_pred HcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 009470 369 KDGK-LEDAIKVLNSMVRKGCNPNASTFNMIF----RCISK---LGDVNGAHRMYGKMKDLKCEPN----TVTYNILMQM 436 (534)
Q Consensus 369 ~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~ 436 (534)
+.|. -++|..+++.+.+-. .-|...-|.+. .+|.+ ...+..-.++-+-+.+.|+.|- ...-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 3444 677777777776542 12333333222 22221 2233344444445556776653 3444555543
Q ss_pred --HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 009470 437 --FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMV 504 (534)
Q Consensus 437 --~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 504 (534)
+...|++.++.-.-..+.+ +.|+..+|..+.-++....++++|.+++.. ++|+..+++.=
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~------LP~n~~~~dsk 531 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK------LPPNERMRDSK 531 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh------CCCchhhHHHH
Confidence 4568999998876666665 689999999999999999999999999875 47887777653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.12 E-value=1 Score=41.34 Aligned_cols=142 Identities=11% Similarity=0.185 Sum_probs=56.9
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
...|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+-...-.........-|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 3444445555544444443221 233334444455555555555555544432111111111111122222333333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG 512 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 512 (534)
.+-.+.... +-|...-..+...+...|+.++|.+.+-.++++..-.-|...-..++..+.-.|
T Consensus 224 ~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 224 DLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333221 224444444455555555555555555444443212233344444555544444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.34 Score=48.34 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHV 333 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 333 (534)
-.+.++..+-+.|..+.|+++..+-. .-.+...+.|+++.|.++.++. .+...|..|.....
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 35555555555565555555533211 1122334555555555443322 24455666666666
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009470 334 KASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHR 413 (534)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 413 (534)
+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+....+|- ++....++...|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 66666666655555432 33444455555555555555555544431 3444444444555555555
Q ss_pred HHH
Q 009470 414 MYG 416 (534)
Q Consensus 414 ~~~ 416 (534)
++.
T Consensus 424 lL~ 426 (443)
T PF04053_consen 424 LLI 426 (443)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.019 Score=41.83 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEEN----EV-EPN-VNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+|+.+...|...|++++|+..+++..+. |- .++ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666667777777777777777666532 10 111 34567777777888888888888877665
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.15 Score=48.65 Aligned_cols=140 Identities=13% Similarity=0.115 Sum_probs=88.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS 442 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 442 (534)
-.+.|.+.|++..|...|+++...= . +...-+.++..... ..-..++..+..+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-~------------~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-E------------YRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-h------------ccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhh
Confidence 3477888899999988888866530 0 00111111111111 1123356677778888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHH-HHHHHHHcCCH-HHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEM-VLQQLRRAGQL-QKHEEL 520 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~-~~a~~~ 520 (534)
+.+|+...+...+.+ +.|....-.=..+|...|+++.|+..|+++++ +.|+...... |+..-.+..+. +...++
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~ 348 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKM 348 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888875 66777777777888888899999999998888 4565544443 43333333333 334677
Q ss_pred HHHHHHc
Q 009470 521 VEKMVDR 527 (534)
Q Consensus 521 ~~~~~~~ 527 (534)
|..|..+
T Consensus 349 y~~mF~k 355 (397)
T KOG0543|consen 349 YANMFAK 355 (397)
T ss_pred HHHHhhc
Confidence 7777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.39 Score=44.55 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=63.7
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH----HHHHHHHHHHhcCCHHH
Q 009470 195 RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVI----VYTNLVRGWCRAGNISE 270 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~ 270 (534)
..|+..+|-..++++.+. .+.|...+...=.++...|+.+.-...++++.....+|.. +-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345555555555555543 3455555555556666666666666666665544333332 22334444556666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAE 312 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 312 (534)
|++.-++..+.+. -|...-.++...+-..|++.++.++..+
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666666655432 2445555555555666666666665544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.12 Score=46.73 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCE--PNTVTYNILMQMFATSKSTDMVLKLKKEMEEN-EVEP-NVNTYRILI 469 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p-~~~~~~~li 469 (534)
.|+.-+.. .+.|++..|...|...++.... -....+-.|.+.+...|++++|..+|..+.+. +-.| -...+-.|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 3455677777777666654311 01223445666666777777777766666553 1111 124555566
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcC
Q 009470 470 TMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
....+.|+.++|+..|+++++++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 66666777777777777776654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.3 Score=40.70 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=27.2
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
....|++.+|...|.......+.+...--.++.+|...|+.+.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3445555555555555544444444445555555555555555555555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.14 Score=50.08 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 392 ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT----VTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
...++.+..+|.+.|++++|+..|++..+.. |+. .+|..+..+|...|+.++|+..+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555432 221 2345555555555555555555555544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.7 Score=38.06 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHHHc
Q 009470 147 SPDLYHEMINLAGK 160 (534)
Q Consensus 147 ~~~~~~~li~~~~~ 160 (534)
++..++.++..|++
T Consensus 40 ~~~~~~~li~ly~~ 53 (140)
T smart00299 40 NPALQTKLIELYAK 53 (140)
T ss_pred chhHHHHHHHHHHH
Confidence 33344444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.87 E-value=3.4 Score=45.22 Aligned_cols=313 Identities=13% Similarity=0.134 Sum_probs=147.4
Q ss_pred HHHHHHHhCCC-----CCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCC----HH
Q 009470 133 SFFNWVTARPE-----FVHSPDLYHEMINLAGKV-RQFDLAWHFIDLMKSRNVEITV--DTFSILVRRYVRAGL----AA 200 (534)
Q Consensus 133 ~~f~~~~~~~~-----~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~----~~ 200 (534)
.+|.|+.++.. +.+++..|-.-+.++.+. ++.+-...++-.+...++.-+. .++.+-...|..... ..
T Consensus 695 ~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~r~~~d~kv~ 774 (1265)
T KOG1920|consen 695 EAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMSRDPYDNKVN 774 (1265)
T ss_pred HHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEeccchhhHHH
Confidence 56778876432 345566666666666644 4455555555555543321110 111111112222222 22
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhc-cCC--------------CCHHHHHHH-----
Q 009470 201 EAVHAFNRMEEYGCAPDKIAFSIVISILCRKR--RASEAQSFFDSLKD-KFE--------------PDVIVYTNL----- 258 (534)
Q Consensus 201 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~-~~~--------------~~~~~~~~l----- 258 (534)
...+++...... ..|+ .....+|..|.+.+ .++.|++...++.. ... +....|+.-
T Consensus 775 ~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYD 852 (1265)
T KOG1920|consen 775 SVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYD 852 (1265)
T ss_pred HHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccc
Confidence 223333333322 2355 44556777888877 67777776666553 100 111112211
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 259 -----VRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHV 333 (534)
Q Consensus 259 -----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 333 (534)
+-+...+.|+.+-+-+++++.+. +++..-| .|+ ...|+++.|+.-+.++. ...|.-.++.--
T Consensus 853 l~Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID--~~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~ 919 (1265)
T KOG1920|consen 853 LDLALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KID--DYLKRYEDALSHLSECG-------ETYFPECKNYIK 919 (1265)
T ss_pred hHHHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHH--HHHHHHHHHHHHHHHcC-------ccccHHHHHHHH
Confidence 11112223333333333333321 1111100 011 11234444544444332 112333444444
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhh----HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh
Q 009470 334 KASRTEKVLQVYNQMKRLGCEADTIT----YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVN 409 (534)
Q Consensus 334 ~~g~~~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 409 (534)
+.|-+++|+.++ .++... |.+....+...+.+++|--.|+..-+ ....+.+|...|++.
T Consensus 920 kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr 982 (1265)
T KOG1920|consen 920 KHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWR 982 (1265)
T ss_pred hcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHH
Confidence 556666666555 334333 33344444556667777666665432 123456677777777
Q ss_pred HHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 410 GAHRMYGKMKDLKCEPNTVT--YNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 410 ~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
+|..+..++... -|... -..|+.-+...++.-+|-++..+.... ..-.+..||+...|++|+++...
T Consensus 983 ~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 983 EALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 777777766531 12221 245566666777777777777666442 12233456666677777666544
Q ss_pred H
Q 009470 488 M 488 (534)
Q Consensus 488 ~ 488 (534)
.
T Consensus 1052 ~ 1052 (1265)
T KOG1920|consen 1052 A 1052 (1265)
T ss_pred c
Confidence 3
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.36 Score=39.30 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN--VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
++..+..-.....+.|+++.|.+.|+.+..+- -+-...+--.++.+|.+.|++++|+..+++..+....--..-|...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34444444555667899999999998888772 1335567778888999999999999999988875432222345444
Q ss_pred HHHHHh
Q 009470 225 ISILCR 230 (534)
Q Consensus 225 l~~~~~ 230 (534)
+.+++.
T Consensus 89 ~~gL~~ 94 (142)
T PF13512_consen 89 MRGLSY 94 (142)
T ss_pred HHHHHH
Confidence 544443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.21 Score=40.21 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=65.6
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQ 435 (534)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 435 (534)
|..++..+|.++++.|+.+....+++....-++ +.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 455677777777777777777777765543221 110 00000 1123345788899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEE-NEVEPNVNTYRILITMY 472 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~ 472 (534)
+|+..|++..|+++++...+ .+++.+..+|..|++-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999988765 57788888888888733
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.48 Score=37.56 Aligned_cols=89 Identities=16% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHHcCCH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA-GIQPNV---YTYSIVIDALCRCGQI 303 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~~~~~ll~~~~~~g~~ 303 (534)
+...|+++.|++.|.+...-.|.....||.-.+++--.|+.++|++-+++..+. |.+ .. ..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCch
Confidence 344555555555555555545555555666666665566666665555555443 211 11 1222333345555666
Q ss_pred HHHHHHHHHHHHcC
Q 009470 304 TRAHDVFAEMLEVG 317 (534)
Q Consensus 304 ~~A~~~~~~m~~~~ 317 (534)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.24 Score=47.29 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
.++.+.-++.+.+++..|++.-++....-+.|+....--.+++...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34455555666666666666666655555556666666666666666666666666666653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.33 Score=47.47 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 009470 180 EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK----IAFSIVISILCRKRRASEAQSFFDSLKDK 247 (534)
Q Consensus 180 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 247 (534)
+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999998875 4553 35888899999999999999999987653
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.6 Score=38.88 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009470 432 ILMQMFATSKSTDMVLKLKKEMEENE---VEPNVNTYRILITMYCGMGHWNNAYKY 484 (534)
Q Consensus 432 ~li~~~~~~g~~~~a~~l~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~ 484 (534)
..|-.+.-..++..|.++++.--+.+ -.-+..+...|+.+| ..|+.+++.++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 33334444455666666665533211 122344555555544 33555554443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.95 Score=47.30 Aligned_cols=180 Identities=15% Similarity=0.148 Sum_probs=105.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
...-+..+++...++-|..+.+.-......-..........+.+.|++++|...|-+-+.. +.|. .++.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4455666677777777776655432211111122333444556778888888777766532 2222 244556666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 009470 301 GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVL 380 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (534)
.++.+-..+++.+.+.|.. +...-..|+.+|.+.++.++..+..+... .|.. ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 6777777778888888754 55555678888888888887777666554 2211 112344555566666666666665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKM 418 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 418 (534)
..... +......++ -..+++++|.+.+..+
T Consensus 487 ~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 54432 233333333 3567788888777655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.96 Score=36.05 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
..++.+...|+-+.-.+++.++.+.+ .+++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444555555555555555554322 4455555555555555555555555555555555
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.59 Score=43.90 Aligned_cols=229 Identities=11% Similarity=0.087 Sum_probs=140.2
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC---CCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKMA--GIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV--GCE---PNSITFNNLMRVHVK 334 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~---~~~~~~~~li~~~~~ 334 (534)
+....+.+.|+..+.+-... +..--..+|..+..+.++.|.+++++..--.-++. ... .--..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888776543 11223456777888889999988877653322211 001 112344445555555
Q ss_pred cCChhHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc
Q 009470 335 ASRTEKVLQVYNQMKRL-GCEA---DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG-----CNPNASTFNMIFRCISKL 405 (534)
Q Consensus 335 ~g~~~~a~~~~~~~~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~ 405 (534)
..++.+++.+-+.-... |..+ .......+..++...+.++++++.|+...+-. ......++..+...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554443322 2222 22344556678888889999999998877542 122346788888889999
Q ss_pred CChhHHHHHHHHHHh----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHH----HHHHHHH
Q 009470 406 GDVNGAHRMYGKMKD----LKCEPNTVTYN-----ILMQMFATSKSTDMVLKLKKEMEENEV-EPNVNT----YRILITM 471 (534)
Q Consensus 406 g~~~~A~~~~~~m~~----~~~~p~~~~~~-----~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~~~~----~~~li~~ 471 (534)
.|+++|.-+..+..+ .++..-..-|. .+.-++...|+...|.+.-++..+..+ .-|..+ ...+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999998877766543 23221112222 334466778888888888777654211 124443 3456677
Q ss_pred HHhCCCHHHHHHHHHHHHH
Q 009470 472 YCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~ 490 (534)
|...|+.+.|+.-+++++.
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 8888999998888877765
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.9 Score=40.73 Aligned_cols=227 Identities=10% Similarity=0.079 Sum_probs=141.2
Q ss_pred HHhcCCHHHHHHHHHHhhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKF---EPDVIVYTNLVRGWCRAGNISEAERVFREMKMA--GIQPN---VYTYSIVIDALCR 299 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~ 299 (534)
+....+.++|+..+.+...+. .....+|..+..+.++.|.+++++..--.-++. ...-. ...|-.+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888887755431 223467788889999999988877643222110 01111 2234444455555
Q ss_pred cCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHHc
Q 009470 300 CGQITRAHDVFAEMLEV-GCEP---NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC-----EADTITYNFLIDCHCKD 370 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-----~~~~~~~~~li~~~~~~ 370 (534)
..++.+++.+-..-... |..+ .-....++.+++...+.++++++.|+...+.-. -....+|-.|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555555554433322 2222 123344577788888899999999998765321 12346788999999999
Q ss_pred CChHHHHHHHHHHHHC----CCCCCH-HHH-----HHHHHHHHhcCChhHHHHHHHHHH----hCCCCC-CHHHHHHHHH
Q 009470 371 GKLEDAIKVLNSMVRK----GCNPNA-STF-----NMIFRCISKLGDVNGAHRMYGKMK----DLKCEP-NTVTYNILMQ 435 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~----~~~~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p-~~~~~~~li~ 435 (534)
.|+++|.-+..+..+. ++. |. .-| ..|.-++...|++..|.+.-++.. +.|-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999999888776553 322 22 122 234456777888888888777664 344221 2233456777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~ 455 (534)
.|...|+.|.|+.-|+....
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 88889999998888877643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.1 Score=44.09 Aligned_cols=145 Identities=11% Similarity=0.078 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009470 164 FDLAWHFIDLMK---SRNVEITVDTFSILVRRYVR---------AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231 (534)
Q Consensus 164 ~~~A~~~~~~m~---~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 231 (534)
.+.|..+|.+.. +.+ +.....|..+..++.. .....+|.++.++..+.+ +-|..+...+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456777787777 332 1224444444443332 123445555565655554 45566666666666666
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 232 RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI-QPNVYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 232 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
++++.|...|++.....|....+|....-...-.|+.++|.+.+++..+... ..........++.|+..+ .++|++++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 6677777777776665555566666666666666777777777776544321 111222233333444433 45555554
Q ss_pred H
Q 009470 311 A 311 (534)
Q Consensus 311 ~ 311 (534)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.41 Score=37.95 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=53.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhCCC
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNT---YRILITMYCGMGH 477 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~---~~~li~~~~~~g~ 477 (534)
++...|+++.|++.|.+....- +-....||.-.+++.-.|+.++|+.=+++..+..-.-.... |..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4556677777777777666543 23556677777777777777777776666665321112222 2222224555666
Q ss_pred HHHHHHHHHHHHHcC
Q 009470 478 WNNAYKYIREMIEEK 492 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~ 492 (534)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 677777776666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.41 E-value=1.8 Score=38.45 Aligned_cols=166 Identities=17% Similarity=0.123 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKD--KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVID- 295 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~- 295 (534)
..+......+...++...+...+..... ........+..+...+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 4444455555555555555555555443 233344445555555555555555655555555432221 111111112
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCh
Q 009470 296 ALCRCGQITRAHDVFAEMLEVGC--EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKL 373 (534)
Q Consensus 296 ~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 373 (534)
.+...|++++|...+.+...... ......+......+...++.+.+...+....+.........+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555555533211 0112222222222334444555555444444332110233344444444444444
Q ss_pred HHHHHHHHHHHH
Q 009470 374 EDAIKVLNSMVR 385 (534)
Q Consensus 374 ~~A~~~~~~m~~ 385 (534)
++|...+.....
T Consensus 219 ~~a~~~~~~~~~ 230 (291)
T COG0457 219 EEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHh
Confidence 444444444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.37 E-value=3.6 Score=41.63 Aligned_cols=369 Identities=9% Similarity=0.052 Sum_probs=189.2
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 009470 132 LSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYV-RAGLAAEAVHAFNRME 210 (534)
Q Consensus 132 l~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 210 (534)
...++.++. .++.--.-|......=.+.|..+.+..+|++-... ++.++..|.....-+. ..|+.+...+.|+...
T Consensus 65 r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 65 REVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 334444442 23444456666777777788888888888876654 4566666665555443 4467777777777776
Q ss_pred Hc-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHH--
Q 009470 211 EY-GCA-PDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA------GNISEAERVFREMKM-- 280 (534)
Q Consensus 211 ~~-g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~------g~~~~A~~~~~~m~~-- 280 (534)
.. |.. -....|...|..-..+++......+++++.+--.....-|-.--..+.+. ...+++.++-....+
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 43 321 12344555666556677777777777776542111111111111111111 122222222221111
Q ss_pred ------------------CCCCCCHH--HHHHHH-------HHHHHcCCHHHHHHHHHHHHHcC---C----CCCHHHHH
Q 009470 281 ------------------AGIQPNVY--TYSIVI-------DALCRCGQITRAHDVFAEMLEVG---C----EPNSITFN 326 (534)
Q Consensus 281 ------------------~g~~p~~~--~~~~ll-------~~~~~~g~~~~A~~~~~~m~~~~---~----~~~~~~~~ 326 (534)
.+-+-+.. ..+.+- ..+-......+....+++-+..- + .++..+|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 00000000 001110 11111112222222233222211 1 23456788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHh
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN--PNASTFNMIFRCISK 404 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l~~~~~~ 404 (534)
.-+..-.+.|+.+.+.-+|+...-. +..=...|--.+.-....|+.+-|..++....+--.+ |....+.+. ..-.
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~ 378 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR--FEES 378 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHh
Confidence 8888888889999888888876532 1111233333444444558888888877766655333 222223322 2345
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCCHHHHHHHH----H-HHHhC
Q 009470 405 LGDVNGAHRMYGKMKDLKCEPNTVT-YNILMQMFATSKSTDMVLK---LKKEMEENEVEPNVNTYRILI----T-MYCGM 475 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~---l~~~m~~~~~~p~~~~~~~li----~-~~~~~ 475 (534)
.|++..|..+++.+.+.- |+..- -..-+....+.|+.+.+.. ++....+. .-+..+...+. + .+.-.
T Consensus 379 ~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred hccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHh
Confidence 679999999999987653 44322 2223344556777777773 33333221 11212222222 1 12235
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 009470 476 GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG 512 (534)
Q Consensus 476 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 512 (534)
++.+.|..++.++.+. .+++...|..+++.+...+
T Consensus 455 ~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI--LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCC
Confidence 7788999999998885 4566677777777765554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=47.63 Aligned_cols=97 Identities=12% Similarity=0.174 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 130 QVLSFFNWVTARPEFV--HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFN 207 (534)
Q Consensus 130 ~al~~f~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (534)
.-..|++|+......- .-..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+
T Consensus 133 ~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 133 GDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3345777776532211 112367778888888888888888888888876 5677888888888888888888888888
Q ss_pred HHHH-----cCCCCCHHHHHHHHHH
Q 009470 208 RMEE-----YGCAPDKIAFSIVISI 227 (534)
Q Consensus 208 ~m~~-----~g~~~~~~~~~~ll~~ 227 (534)
++.+ .|+.|...+.......
T Consensus 212 ~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 212 QLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHhhhhcCCCccHHHHHHHHHH
Confidence 7754 5777777666555544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.6 Score=39.51 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCChh---HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 324 TFNNLMRVHVKASRTE---KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
++..++.+|...+..+ +|..+++.+.... .-...++-.-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555555443 3333444443221 222334444444455556666666666666654
|
It is also involved in sporulation []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.28 E-value=3.9 Score=41.52 Aligned_cols=176 Identities=17% Similarity=0.250 Sum_probs=113.3
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-----HHHHHHHHHHHHH----cCCHHHHH
Q 009470 238 QSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG-IQPN-----VYTYSIVIDALCR----CGQITRAH 307 (534)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-----~~~~~~ll~~~~~----~g~~~~A~ 307 (534)
.-+|.-+..-+||. +..++...+-.||-+.+++.+.+..+.+ +.-. ...|+.++..++. ..+.+.|.
T Consensus 177 ~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~ 253 (468)
T PF10300_consen 177 FGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAE 253 (468)
T ss_pred HHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHH
Confidence 34455555545553 4456666677788888888888876542 2211 1234444444443 45678899
Q ss_pred HHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHcC---CCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 308 DVFAEMLEVGCEPNSITFNNL-MRVHVKASRTEKVLQVYNQMKRLG---CEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
++++.+.+. -|+...|... .+.+...|+.++|.+.|++..... -+.....+--+.-++.-.+++++|.+.+..+
T Consensus 254 ~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 254 ELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 999999887 5776666543 356777899999999999765321 1223344555666778889999999999999
Q ss_pred HHCCCCCCHHHHHHHHH-HHHhcCCh-------hHHHHHHHHHH
Q 009470 384 VRKGCNPNASTFNMIFR-CISKLGDV-------NGAHRMYGKMK 419 (534)
Q Consensus 384 ~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~m~ 419 (534)
.+..- -+..+|.-+.. ++...|+. ++|.++|.++.
T Consensus 332 ~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 332 LKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred Hhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88642 24444444433 34456666 77888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.5 Score=40.85 Aligned_cols=150 Identities=16% Similarity=0.212 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
.++.-.-+..+.+.-.+.-++..+. .||..+.-+++ +--....+.+|++++++..+.|- ..+. +..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg-------~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLG-------KSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhc-------hhh
Confidence 4445555666666666666666653 34432222221 12234557788888887766531 0110 000
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-PNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
..+..-..++....+...+-..+-..+..++-+.|+.++|.+.+++|.+.... -...+...|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 00111111122222222223333345666777788888888888888765322 13345667788888888888888888
Q ss_pred HHHHh
Q 009470 416 GKMKD 420 (534)
Q Consensus 416 ~~m~~ 420 (534)
.+..+
T Consensus 319 ~kYdD 323 (539)
T PF04184_consen 319 AKYDD 323 (539)
T ss_pred HHhcc
Confidence 77654
|
The molecular function of this protein is uncertain. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.5 Score=36.07 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=17.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR 195 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 195 (534)
++..+.+.+.......+++.+...+ ..+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3444444444444444444444443 1333444444444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.12 E-value=3 Score=39.29 Aligned_cols=127 Identities=13% Similarity=0.269 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHhcCC-
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCR--KR----RASEAQSFFDSLKDK----FEPDVIVYTNLVRGWCRAGN- 267 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~- 267 (534)
+++.+.+++.|.+.|+.-+..+|-+..-.... .. ...+|..+|+.|++. ..++-..+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887777666554433332 11 244567777777654 23344445444433 2222
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 268 ---ISEAERVFREMKMAGIQPNVY--TYSIVIDALCRCG--QITRAHDVFAEMLEVGCEPNSITFNN 327 (534)
Q Consensus 268 ---~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (534)
.+.++.+|+.+.+.|+..+-. ....++...-... .+.++.++++.+.+.|++.....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 345566666666655543321 1222222111111 13456666666666666655555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.51 Score=46.43 Aligned_cols=169 Identities=12% Similarity=0.154 Sum_probs=91.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009470 329 MRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDV 408 (534)
Q Consensus 329 i~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 408 (534)
|.-.-+..+.+.-.+.-++..+. .||..+.-.++ +--......+|.+++++..+.|-. .+..- ......|
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g-- 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHG-- 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhccc--
Confidence 33334555565555555555543 34332221111 122344577888888887765311 11000 0000111
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 409 NGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-VEPNVNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 409 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
..++........+-..+-..+..++.+.|+.++|++.+++|.+.. ..-+......|+.++...+.+.++..++.+
T Consensus 245 ----~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 245 ----HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred ----chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111112222212223333456777788999999999999998642 222345778899999999999999999998
Q ss_pred HHHcCCCCCCHH--HHHHHHHHHHHcCC
Q 009470 488 MIEEKCLKPGSS--VYEMVLQQLRRAGQ 513 (534)
Q Consensus 488 ~~~~~~~~p~~~--~~~~l~~~~~~~g~ 513 (534)
.-+.. -|... .|+..+-.....|+
T Consensus 321 YdDi~--lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 321 YDDIS--LPKSATICYTAALLKARAVGD 346 (539)
T ss_pred hcccc--CCchHHHHHHHHHHHHHhhcc
Confidence 75432 24433 34544433343443
|
The molecular function of this protein is uncertain. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.10 E-value=3.6 Score=40.11 Aligned_cols=129 Identities=12% Similarity=0.189 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 009470 392 ASTFNMIFRCISKLGDVNGAHRMYGKMKDLK-CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNT-YRILI 469 (534)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~-~~~li 469 (534)
..+|...+..-.+...++.|..+|-+..+.+ ..++...+++++..++ .|+...|..+|+--..+ .||... ....+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3455566666666666666777776666665 4455666666666555 35556666666654433 233322 23444
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 470 TMYCGMGHWNNAYKYIREMIEEKCLKPG--SSVYEMVLQQLRRAGQLQKHEELVEKMV 525 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 525 (534)
..+...++-+.|..+|+..+++ +..+ ..+|..+++.-..-|++..+..+-+++.
T Consensus 474 ~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 474 LFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 5555666666666666655543 2222 4556666666666666666655555544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.21 Score=45.14 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------------hhHHH
Q 009470 284 QPNVYTYSIVIDALCR-----CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR----------------TEKVL 342 (534)
Q Consensus 284 ~p~~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------------~~~a~ 342 (534)
+.|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..- -+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3456666666666543 34566666667777777777777777777776544321 12244
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDCHCKDG 371 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g 371 (534)
+++++|...|+.||..+-..|++++.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 55555555555555555555555554444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.81 Score=37.32 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=48.3
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPD---VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (534)
...+.|++++|.+.|+.+..+++.. ..+.-.++.+|.+.+++++|...+++.++....-.-.-|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3456778888888888887765543 344556778888888888888888888776443333445555555443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.23 Score=44.84 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG----------------LAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
+.++-....++.|.+-|+.-|..+|+.|+..+-+.. +-+-+++++++|+..|+.||..+-..++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 334444445677778888888888888887654332 3345788899999999999999988899
Q ss_pred HHHHhcCCHH-HHHHHHHHh
Q 009470 226 SILCRKRRAS-EAQSFFDSL 244 (534)
Q Consensus 226 ~~~~~~g~~~-~A~~~~~~~ 244 (534)
+++.+.+-.- +..++.-.|
T Consensus 166 n~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 166 NAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhccccccHHHHHHHHHhh
Confidence 8888776532 334444343
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.58 Score=42.44 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=62.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNV--EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY-GCAP-DKIAFSIVI 225 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~-~~~~~~~ll 225 (534)
.|+.-++.+ +.|++..|.+.|....+... ......+--|...+...|++++|..+|..+.+. +-.| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555544 45557777777777666521 123344555677777777777777777776542 1112 235566666
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIV 254 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 254 (534)
....+.|+.++|...|+++.+++|....+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66677777777777777777666655443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.92 E-value=6 Score=41.73 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=65.6
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 009470 156 NLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRAS 235 (534)
Q Consensus 156 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~ 235 (534)
+.+.+.|++++|.+.|-+-... +.| ..+|.-|....+..+-..+++.+.+.|+ .+..--..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchH
Confidence 3344555566555555433221 111 1234444444444455555555555554 23333445666666666666
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 236 EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 236 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+-.++.+....+.- ..-....+..+.+.+-.++|..+-.+... .......+ +-..|++++|++.+..+
T Consensus 449 kL~efI~~~~~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCDKGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCCCcce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 65555554432200 00123344444455555555444433321 22222222 33467777777777655
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.76 E-value=2 Score=37.54 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
.-+++||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +---|++.-|.+-|...-+
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 3456777777777777777777777777666653322222222222 2235666666666555544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.64 E-value=2.2 Score=39.89 Aligned_cols=154 Identities=8% Similarity=-0.028 Sum_probs=109.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCChhhHHHHHHHHHHcCChH
Q 009470 298 CRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL---GCEADTITYNFLIDCHCKDGKLE 374 (534)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~ 374 (534)
--.|+..+|-..++++.+.- +.|...+...=++|.-.|+.+.-...++++... +++-...+-..+..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34788888888999888763 557778888888899999998888888887654 22222333344556677889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 375 DAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC---EPNTVTYNILMQMFATSKSTDMVLKLKK 451 (534)
Q Consensus 375 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~l~~ 451 (534)
+|++.-++..+.+ +.|...-.++...+.-.|+..++.++..+-...-- -.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988875 34778888888888889999999888776543210 0011223333445566789999999987
Q ss_pred HH
Q 009470 452 EM 453 (534)
Q Consensus 452 ~m 453 (534)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 64
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.61 E-value=6.7 Score=40.85 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=25.4
Q ss_pred HccCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcC
Q 009470 159 GKVRQFDLAWHFIDLMKS-------RNVEITVDTFSILVRRYVRAG-----LAAEAVHAFNRMEEYG 213 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g 213 (534)
+...+.+.|..+|+.+.+ .+ ......-+...|.+.. +.+.|+.++.+..+.|
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 345566666666666544 22 1123344444444432 3444555555555544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.45 E-value=7.3 Score=40.59 Aligned_cols=245 Identities=14% Similarity=0.103 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHH--HHH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcC--
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNL--VRG-WCRAGNISEAERVFREMKM-------AGIQPNVYTYSIVIDALCRCG-- 301 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~l--i~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~g-- 301 (534)
...|.++++...............+ ..+ +....|.+.|+.+++.+.+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4456666666544211111111111 222 3455677777777777755 33 2234445555565532
Q ss_pred ---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH----HcCCh
Q 009470 302 ---QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK-ASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC----KDGKL 373 (534)
Q Consensus 302 ---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~----~~g~~ 373 (534)
+.+.|..++...-+.| .|+....-..+..... ..+...|.++|....+.|. .+. +-.+..+|. -..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A--~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILA--IYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHH--HHHHHHHHHhCCCcCCCH
Confidence 5566788887777776 3344333222222111 2356778888888777763 222 222222221 23367
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HH---Hh----cCCHHH
Q 009470 374 EDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQ-MF---AT----SKSTDM 445 (534)
Q Consensus 374 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~---~~----~g~~~~ 445 (534)
+.|..++++..++| .|...--...+..+.. ++.+.+.-.+..+.+.|.. ...+-...+. .. .. ..+.+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhH
Confidence 77888888887776 2222222222223333 6667776666666665533 2222221111 11 00 124455
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHc
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGM----GHWNNAYKYIREMIEE 491 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~ 491 (534)
+..++......| +......+...|... .+++.|...+.....+
T Consensus 458 ~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~ 504 (552)
T KOG1550|consen 458 AFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ 504 (552)
T ss_pred HHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence 666666665544 334444444433322 2466666666665553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.26 E-value=6.3 Score=39.15 Aligned_cols=164 Identities=13% Similarity=0.200 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 321 NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFR 400 (534)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 400 (534)
|.....+++..+.....+.-+..+-.+|...| .+...|..++++|... ..++-..+|+++.+..+. |++.-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44444555555555555555555555665553 4455566666666555 445555566655555432 3333333444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCE-----PNTVTYNILMQMFATSKSTDMVLKLKKEMEE-NEVEPNVNTYRILITMYCG 474 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p~~~~~~~li~~~~~ 474 (534)
.|.+ ++...+..+|.++...-++ .-...|.-+...- ..+.|....+...+.. .|..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 5555666666555432111 0112333333211 2445555555555543 2333333444555555666
Q ss_pred CCCHHHHHHHHHHHHHc
Q 009470 475 MGHWNNAYKYIREMIEE 491 (534)
Q Consensus 475 ~g~~~~A~~~~~~~~~~ 491 (534)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66677777766666554
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=3.3 Score=34.87 Aligned_cols=126 Identities=12% Similarity=0.138 Sum_probs=81.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCC
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNAS-TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV-TYNIL--MQMFATSKS 442 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l--i~~~~~~g~ 442 (534)
+.+.+..++|+.-|.++.+.|...-+. ....+.....+.|+...|...|+++-.....|-.. -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356677777888888777776542221 22233445667888888888888886544333322 11111 123567888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
++....-.+-+...+-+.....-..|.-+-.+.|++..|.++|..+....
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 88888877777665544444555667777778999999999999988765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.21 Score=31.49 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=12.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
|..+...|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.31 Score=30.73 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
++..+...|.+.|++++|+++|+++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45667777777788888888888777753
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.75 E-value=8.8 Score=38.98 Aligned_cols=130 Identities=9% Similarity=0.112 Sum_probs=91.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+|.---.....+.+..+++.+... .|.--..|......=.+.|..+.+.++|++-.. |++.....|......++
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh
Confidence 3444443333334446667777777655 244455677777777888999999999999876 46666666766665544
Q ss_pred -hcCCHHHHHHHHHHhhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 230 -RKRRASEAQSFFDSLKDKF---EPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 230 -~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
..|+.+.....|+....-+ -.....|...|..-...+++.....++++.++.
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4578888888888876532 224567888888888899999999999999864
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.74 E-value=3.7 Score=34.58 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=61.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHHHcCCh
Q 009470 263 CRAGNISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSI-TFNNL--MRVHVKASRT 338 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l--i~~~~~~g~~ 338 (534)
.+.+..++|+.-|.++.+.|..- .+.............|+..+|...|+++-.....|-.. -...+ .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556666666666666654331 11111222334455666666666666665543223221 11111 1124455666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 339 EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
+.+....+.+...+-+.....-..|.-+-.+.|++.+|...|..+...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666665555554443333444455555556666666666666665543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.25 E-value=4.6 Score=34.18 Aligned_cols=26 Identities=15% Similarity=0.465 Sum_probs=12.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 174 MKSRNVEITVDTFSILVRRYVRAGLA 199 (534)
Q Consensus 174 m~~~~~~~~~~~~~~li~~~~~~g~~ 199 (534)
+.+.+++++...+..+++.+.+.|++
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 33344444444555555555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.1 Score=41.23 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM-----AGIQPNVYTYSI 292 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 292 (534)
++..++..+...|+.+.+...++++....+-+...|..++.+|.+.|+...|+..|+.+.. .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3444555556666666666666666665566666666666666666666666666665543 355555544433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.02 E-value=11 Score=37.70 Aligned_cols=181 Identities=14% Similarity=0.122 Sum_probs=128.3
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 144 FVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSI 223 (534)
Q Consensus 144 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 223 (534)
...+....-+++.+++.+........+..+|..-| -+.-.|..++..|..+ ..++-..+++++.+..+ -|.+.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 34566678889999999999999999999999876 3567899999999988 66788899999988754 23333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEP------DVIVYTNLVRGWCRAGNISEAERVFREMKMA-GIQPNVYTYSIVIDA 296 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~ 296 (534)
|... ...++.+.+..+|.++..++-| -...|.-+...- ..+.+..+.+..++... |...-.+.+.-+-.-
T Consensus 138 La~~-yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADK-YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHH-HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 4444 4558899999999987765433 123455554421 35677777777777543 444455666667778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVH 332 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (534)
|....++++|++++..+.+.+ .-|+..-..++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 888999999999999887765 33555555555433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.69 E-value=9 Score=36.11 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHc
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCR--CG----QITRAHDVFAEMLEV 316 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g----~~~~A~~~~~~m~~~ 316 (534)
++...+++.|.+.|+.-+..+|-+....... .. ...+|..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666555444332222111 11 234556666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.9 Score=37.15 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEI--TVDTFSILVRRYVRAGLAAEAVHAFNRME 210 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (534)
..+..+.+.|.+.|+.+.|.+.|.++.+....+ -...+-.+|+.....|++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 356666777777777777777777766653222 24555666666666777776666666654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.9 Score=32.64 Aligned_cols=60 Identities=17% Similarity=0.261 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 201 EAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 201 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
+..+.++.+....+.|++.+....+++|.+.+++..|.++|+.++.+.......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 455666666666777888888888888888888888888888777665544445655544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.51 E-value=6.4 Score=33.95 Aligned_cols=92 Identities=16% Similarity=0.073 Sum_probs=51.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 434 MQMFATSKSTDMVLKLKKEMEENEVEPN--VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
...+...|++++|..-++........-+ ..+--.|.+.....|.+|+|+..++...+.+ + .......-.+++...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w--~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-W--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H--HHHHHHHhhhHHHHc
Confidence 3456666777777776666554311111 1111233445566677777777776665432 1 222233445667777
Q ss_pred CCHHHHHHHHHHHHHcC
Q 009470 512 GQLQKHEELVEKMVDRG 528 (534)
Q Consensus 512 g~~~~a~~~~~~~~~~g 528 (534)
|+-++|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 77777777777776664
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.49 E-value=12 Score=37.15 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=75.0
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCCCCCHHH
Q 009470 424 EPNTVTY-NILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC--GMGHWNNAYKYIREMIEEKCLKPGSSV 500 (534)
Q Consensus 424 ~p~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~p~~~~ 500 (534)
.++..++ +.+++.+.+.|-+.+|...+..+.... +|+...|..+|+.=. ..-+..-+.++++.|....| .++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 3454444 567777788899999999999998873 677888888876321 22337788899999998876 67777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 501 YEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 501 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
|...+..=...|+.+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 87777766788999988888777654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.36 E-value=11 Score=36.45 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 355 ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP---NASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 355 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
....++..++..+.+.|.++.|...+..+...+... .......-+..+-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667778888888999999999888887753211 344455556667778888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.11 E-value=18 Score=38.23 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=34.2
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHc
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL-------AAEAVHAFNRMEEY 212 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 212 (534)
.+|-.|.++|++++|.++..+....- ......+-..+..|....+ -++...-|++..+.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~-~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQF-QKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS--TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhh-cchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 45667778899999988885554432 2333566667777765432 23444455555443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.39 Score=28.68 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 465 YRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
|..|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666777777777666643
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.98 Score=41.65 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 009470 143 EFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN---VE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD 217 (534)
Q Consensus 143 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 217 (534)
|.+++..+....+.......+++.+...+-+++... .. -+..+|-.++. .-++++++.++..=...|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 555666677777777777888899888887776541 11 12333333333 3367799999988889999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYT 256 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 256 (534)
.++++.+++.+.+.+++.+|.++...|..+..-+....+
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~nell~ 173 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENELLQ 173 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999988877654333333333
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.78 E-value=3.2 Score=31.12 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
.-++.+.++.+....+.|++.+....+++|-+.+++..|.++|+.++.+...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 34566667777777778888888888888888888888888888777655444455655443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.66 E-value=3.5 Score=35.53 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEVGCEPN--SITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
+..+.+.|++.|+.++|++.|.++.+....+. ...+-.+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555555555555555555444322221 222334444455555555555544444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.57 Score=27.36 Aligned_cols=28 Identities=25% Similarity=0.524 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+|..+...|...|++++|+..|+++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3556666677777777777777777766
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.11 E-value=5.8 Score=33.14 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=62.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hCC
Q 009470 399 FRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYN-ILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC-GMG 476 (534)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~-~~g 476 (534)
+..-.+.++.+++..+++.+.-. .|...... .-...+...|++++|..+++++.+.. |....-..|+..|. ..|
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC
Confidence 33445778999999999988765 34433322 22345678899999999999987753 33222233333232 333
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 477 HWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 519 (534)
+. +=..+-+++.+.+ +|..+ ..++..+....+...|.+
T Consensus 93 D~-~Wr~~A~evle~~---~d~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DP-SWRRYADEVLESG---ADPDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred Ch-HHHHHHHHHHhcC---CChHH-HHHHHHHHHhccccchhh
Confidence 32 2223344455543 33333 335555555555544443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.86 E-value=8.6 Score=32.14 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKM 280 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.68 Score=27.62 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRM 209 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m 209 (534)
+|..|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556667777777777777777664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.32 E-value=10 Score=32.10 Aligned_cols=30 Identities=3% Similarity=0.078 Sum_probs=15.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRT 338 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 338 (534)
+++.+.+.+++++...+..+++.+.+.|++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333444445555555555555555555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.76 Score=26.67 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.|..+...+...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666677777777777776666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.06 E-value=19 Score=34.84 Aligned_cols=67 Identities=16% Similarity=0.172 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA---DTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 320 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
....+|..+++.+.+.|.++.|...+..+...+... +..+.-.-+..+...|+..+|...+++..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 355678889999999999999999999988754222 4455555677788899999999999988873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=17 Score=34.05 Aligned_cols=233 Identities=12% Similarity=0.093 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQI----TRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
|..+....+..+...|.. ++...+..+... +|...-...+.++...|+. +++...+..+... .++...-.
T Consensus 36 d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 444444445555544432 222233333322 2444444445555555542 3455555555333 33444444
Q ss_pred HHHHHHHHcCCh-----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 327 NLMRVHVKASRT-----EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRC 401 (534)
Q Consensus 327 ~li~~~~~~g~~-----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 401 (534)
..+.++...+.. ..+...+..... .++..+-...+.++.+.|+ ++|...+-.+.+. ++..+-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443321 122333322222 3355555566666666665 4555666555553 344555555555
Q ss_pred HHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009470 402 ISKLG-DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 402 ~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 480 (534)
+.+.+ +.+.+...+..+.. .++..+-...+.++.+.|+. .|...+-+..+.+ + .....+.++.+.|.. +
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h
Confidence 55543 23455555555554 34666666777777777774 4555544444433 2 234566777777774 6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 009470 481 AYKYIREMIEEKCLKPGSSVYEMVLQQLR 509 (534)
Q Consensus 481 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 509 (534)
|+..+.++.+. .||..+-...+.+|.
T Consensus 253 a~p~L~~l~~~---~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 253 LLPVLDTLLYK---FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHhh---CCChhHHHHHHHHHh
Confidence 77888887764 356666555555543
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.63 E-value=33 Score=36.90 Aligned_cols=226 Identities=10% Similarity=0.076 Sum_probs=119.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHHcCChhHHHHHHHHHHHc----CCCCChhhHHHHHH
Q 009470 298 CRCGQITRAHDVFAEMLEVGCEPNS-------ITFNNLMR-VHVKASRTEKVLQVYNQMKRL----GCEADTITYNFLID 365 (534)
Q Consensus 298 ~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~-~~~~~g~~~~a~~~~~~~~~~----g~~~~~~~~~~li~ 365 (534)
....++++|..++.++...-..|+. ..++.+-. .....|+++++.++.+..... -.......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4568899999988887654222221 13333322 234578888888887766543 23345666777788
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHhcCCh--hHHHHHHHHHHhCC--CC----CCHHHHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMI-----FRCISKLGDV--NGAHRMYGKMKDLK--CE----PNTVTYNI 432 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-----~~~~~~~g~~--~~A~~~~~~m~~~~--~~----p~~~~~~~ 432 (534)
+..-.|++++|..+..+..+..-+-+...+... ...+...|+. .+.+..|....... -. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999988877654222333333222 2335566633 23333333332210 01 12234444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCCHHHHHHHHH
Q 009470 433 LMQMFATS-KSTDMVLKLKKEMEENEVEPNVNT--YRILITMYCGMGHWNNAYKYIREMIEEKC---LKPGSSVYEMVLQ 506 (534)
Q Consensus 433 li~~~~~~-g~~~~a~~l~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~p~~~~~~~l~~ 506 (534)
+..++.+. +...++..-++--......|-... +..|+......|+.++|...++++..... ..++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 55555442 122222222222222222222222 23567778889999999999888876431 1122222222222
Q ss_pred HH--HHcCCHHHHHHHHHH
Q 009470 507 QL--RRAGQLQKHEELVEK 523 (534)
Q Consensus 507 ~~--~~~g~~~~a~~~~~~ 523 (534)
.. ...|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 22 446888877776655
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.17 E-value=6.9 Score=36.35 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=26.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
+.++++.++..=++.|+-||..+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555545555555555555555555555555555555554443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.59 Score=27.52 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=15.3
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 247 KFEPDVIVYTNLVRGWCRAGNISEAE 272 (534)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (534)
..|.+..+|+.+...|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555666666666666666666554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.64 Score=27.37 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=17.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 486 REMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHE 518 (534)
Q Consensus 486 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 518 (534)
+++++.. +-+...|..+...|...|++++|+
T Consensus 3 ~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4444432 334555666666666666666654
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=88.80 E-value=10 Score=33.75 Aligned_cols=138 Identities=12% Similarity=0.131 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009470 361 NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS 440 (534)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (534)
..-+..|.+.-++.-|....+++.+- ...-.+++ -|.+..+..--.++.+-....++.-+.....+++ +...
T Consensus 134 RRtMEiyS~ttRFalaCN~s~KIiEP-----IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~ 205 (333)
T KOG0991|consen 134 RRTMEIYSNTTRFALACNQSEKIIEP-----IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQ 205 (333)
T ss_pred HHHHHHHcccchhhhhhcchhhhhhh-----HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhcc
Confidence 33444555555555555555444431 12222222 2444444444444444444455554555555544 4567
Q ss_pred CCHHHHHHHHHHHHH-CCC-----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 441 KSTDMVLKLKKEMEE-NEV-----------EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 441 g~~~~a~~l~~~m~~-~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
|+..+|+..++.-.. .|. .|.......++..| ..+++++|.+.+.++-+.| +.|.. ..+.+.+.+
T Consensus 206 GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lg-ysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 206 GDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLG-YSPED-IITTLFRVV 282 (333)
T ss_pred chHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcC-CCHHH-HHHHHHHHH
Confidence 888888887776543 221 35555566666654 4578999999999988877 55543 344444444
Q ss_pred H
Q 009470 509 R 509 (534)
Q Consensus 509 ~ 509 (534)
.
T Consensus 283 K 283 (333)
T KOG0991|consen 283 K 283 (333)
T ss_pred H
Confidence 3
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.90 E-value=4.6 Score=40.89 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|...
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 3455555544443332 3344555555555555555555544443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.51 E-value=75 Score=38.42 Aligned_cols=321 Identities=10% Similarity=0.047 Sum_probs=151.1
Q ss_pred HHHHHHHccCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 153 EMINLAGKVRQFDLAWHFIDLM----KSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
.+..+-.+++.+.+|...++.- .+... ....|..+...|+..++++....+...-. .+...+ .-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~--~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKET--EEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHH--HHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHH
Confidence 3444555777888888877773 22211 12233344447888888877776665311 111222 233345
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSI-VIDALCRCGQITRAH 307 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~g~~~~A~ 307 (534)
...|++..|..-|+.+.+..++....++-++......|.++.+....+-.... ..+....++. =+.+--+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 66788888888888888776666777887777777777777776655544432 1222222222 223335566666665
Q ss_pred HHHHHHHHcCCCCCHHHHHHH--HHHHHHcC--ChhHHHHHHHHHHHc--------CCCC-ChhhHHHHHHHHHHcCChH
Q 009470 308 DVFAEMLEVGCEPNSITFNNL--MRVHVKAS--RTEKVLQVYNQMKRL--------GCEA-DTITYNFLIDCHCKDGKLE 374 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g--~~~~a~~~~~~~~~~--------g~~~-~~~~~~~li~~~~~~g~~~ 374 (534)
.... .. +..+|... .....+.. +.-.-.+..+.+.+. +..- -...|..++..+.-..--.
T Consensus 1539 ~~l~--~~-----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1539 SYLS--DR-----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred hhhh--cc-----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5544 11 22223222 22222211 111111222222221 1111 0123333333322111111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 375 DAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAH-RMYGKMKDL----KC-EPNTVTYNILMQMFATSKSTDMVLK 448 (534)
Q Consensus 375 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~ 448 (534)
....+...=......-+..-|..-+..-....+..+-+ .+-+-+... +. .--..+|-...+...++|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 11000000000000011111111111110111111111 111111111 11 1124567777777778899998888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 449 LKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 449 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
.+-...+.+ .| ..+--...-+...|+...|+.++++.++..
T Consensus 1692 all~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 777766654 22 334455566778899999999998888654
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=26 Score=34.69 Aligned_cols=128 Identities=11% Similarity=0.072 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 187 SILVRRYVRAGLAAEAV-HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
..-|..-...|+.-.|- +++.-++...-.|+...+...| ....|+++.+.+.+.....-+.....+...+++...+.
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhch
Confidence 33344445567766554 4555566554456655544444 46789999998888776665555677888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
|++++|...-+.|....++ +...........-..|-++++.-.|+++....
T Consensus 371 ~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999998888876665 33333333333445677889988888887654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.8 Score=26.41 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+++.+...|...|++++|.++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777777665
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.66 E-value=1.9 Score=24.98 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEY 212 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (534)
.+|..+...|...|++++|++.|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666777777777777777777776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=49 Score=35.22 Aligned_cols=323 Identities=11% Similarity=0.067 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
..|....+++ +.|++..+.++...+..... .....|..+..... ...+++....+++-. +.+.....-...+..+
T Consensus 35 ~~f~~A~~a~-~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 35 QRYQQIKQAW-DNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 3455544444 56788888888777653322 12223333332221 224554444443322 1222223334455566
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH- 307 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~- 307 (534)
.+.+++....+++. ..+.+.......+.+....|+.++|......+=..|.. ....++.++..+.+.|.+....
T Consensus 110 a~~~~w~~~~~~~~----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 110 ARREDWRGLLAFSP----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HHccCHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHH
Confidence 67777776666332 23557777778888888999988887777777555433 4567788888888777665432
Q ss_pred -HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH---------cCCCCChhhHHHHHHHH--HHcCChHH
Q 009470 308 -DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKR---------LGCEADTITYNFLIDCH--CKDGKLED 375 (534)
Q Consensus 308 -~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------~g~~~~~~~~~~li~~~--~~~g~~~~ 375 (534)
+-++.+...| +...-..+...+. .+.....+.+..+.+ ..+.++...-..++.++ ....+.+.
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHH
Confidence 2233333333 3333333333221 111111111111111 11112221112122222 23345577
Q ss_pred HHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 376 AIKVLNSMVRKG-CNPN--ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKE 452 (534)
Q Consensus 376 A~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 452 (534)
|..++....... ..+. ..+...+.......+...+|...++...... .+......-+..-...++++.+...+..
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~ 337 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLAR 337 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 777777664442 1111 1223333333333322455666665543322 2444444445555567777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 453 MEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 453 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
|.... .-...-.--+.+++...|+.++|..+|+++.
T Consensus 338 L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 338 LPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 64422 2233333445556566777777777777764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.42 E-value=21 Score=31.02 Aligned_cols=88 Identities=13% Similarity=0.131 Sum_probs=42.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 402 ISKLGDVNGAHRMYGKMKDLKCEPN----TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
+.+.|++++|..-|.+.++.-.... ...|..-..++.+.+.++.|+.-..+.++.+ +-....+..-..+|-+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 3445555555555555554321111 1223333344555556666655555555432 1111222222345556666
Q ss_pred HHHHHHHHHHHHH
Q 009470 478 WNNAYKYIREMIE 490 (534)
Q Consensus 478 ~~~A~~~~~~~~~ 490 (534)
+++|+.-++++.+
T Consensus 184 ~eealeDyKki~E 196 (271)
T KOG4234|consen 184 YEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666666
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.30 E-value=13 Score=37.77 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS 403 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 403 (534)
.-+.++..+.+.|..++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 3455666666777777766542 22211 1223456788888887776643 5567888999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 009470 404 KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYK 483 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 483 (534)
+.|++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|. . |...-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHH
Confidence 99999999988887764 44566667777887766666666666652 2 333346677888888888
Q ss_pred HHHHH
Q 009470 484 YIREM 488 (534)
Q Consensus 484 ~~~~~ 488 (534)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 77543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.03 E-value=7.2 Score=33.94 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=3.4
Q ss_pred ChhHHHHHH
Q 009470 337 RTEKVLQVY 345 (534)
Q Consensus 337 ~~~~a~~~~ 345 (534)
+.+++..++
T Consensus 155 D~~Kt~~ll 163 (203)
T PF11207_consen 155 DPEKTIQLL 163 (203)
T ss_pred CHHHHHHHH
Confidence 333333333
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=86.01 E-value=51 Score=35.05 Aligned_cols=93 Identities=3% Similarity=-0.013 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHH
Q 009470 434 MQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK----CLKPGSSVYEMVLQQLR 509 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~p~~~~~~~l~~~~~ 509 (534)
+..+...|+...|...|..+... .+......+.....+.|.++.++.......... .+ |. .|...+..+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~--~~~~~~~~~a 487 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-PL--AWNDEFRRYT 487 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-Cc--chHHHHHHHH
Confidence 34456678888888888887764 244455556666667788887776654332210 01 21 2444555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC
Q 009470 510 RAGQLQKHEELVEKMVDRGFTAR 532 (534)
Q Consensus 510 ~~g~~~~a~~~~~~~~~~g~~~~ 532 (534)
+.-.++.+.-.--.-.+.+|.|+
T Consensus 488 ~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 488 SGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHcCCCHHHHHHHHHHhcCCCCC
Confidence 54455555443333445666664
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.00 E-value=18 Score=29.81 Aligned_cols=19 Identities=37% Similarity=0.538 Sum_probs=9.2
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKM 280 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++++|.++|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3344555555555555444
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.99 E-value=8.6 Score=28.90 Aligned_cols=60 Identities=8% Similarity=0.152 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
++.+-++.+....+.|+.....+.+++|.+.+++..|+++|+-...+. ..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~--~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC--GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cCchhhHHHHHH
Confidence 455555556666667777777777777777777777777776665443 123445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.76 E-value=24 Score=31.10 Aligned_cols=67 Identities=21% Similarity=0.097 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 249 EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|.-+.+||-|.-.+...|+++.|.+.|+...+....-+-...|.-| ++.--|++.-|.+-+-..-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhc
Confidence 3345566666666677777777777777666543221211112111 122345666666555544443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.67 E-value=16 Score=30.17 Aligned_cols=51 Identities=16% Similarity=0.244 Sum_probs=32.5
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 403 SKLGDVNGAHRMYGKMKDLKCEPNT---VTYNILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 403 ~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
...++.+++..+++.|.-. .|+. .++. ...+...|++++|.++++++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 3467777888888777654 2332 2333 233566788888888888877654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.50 E-value=29 Score=31.68 Aligned_cols=196 Identities=11% Similarity=0.122 Sum_probs=96.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHHc
Q 009470 264 RAGNISEAERVFREMKMAGIQPN---VYTYSIVIDALCRCGQITRAHDVFAEMLEV---GC--EPNSITFNNLMRVHVKA 335 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~ 335 (534)
+..++++|+.-|++..+....-. ......++..+.+.|++++..+.+.+|..- .+ .-+..+.|.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34467777777777665422212 233445566677777777777766666421 00 11223334444333333
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
.+.+-..+.|+.- ++.+++.... +.--.|-..+...|...|++.+-.+++
T Consensus 119 ~~m~LLQ~FYeTT----------------------------L~ALkdAKNe--RLWFKTNtKLgkl~fd~~e~~kl~KIl 168 (440)
T KOG1464|consen 119 KNMDLLQEFYETT----------------------------LDALKDAKNE--RLWFKTNTKLGKLYFDRGEYTKLQKIL 168 (440)
T ss_pred hhhHHHHHHHHHH----------------------------HHHHHhhhcc--eeeeeccchHhhhheeHHHHHHHHHHH
Confidence 3332222222211 1111111111 111112233445555555666656666
Q ss_pred HHHHhC-----CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH-----HhCCCH
Q 009470 416 GKMKDL-----KC------EPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN-EVEPNVNTYRILITMY-----CGMGHW 478 (534)
Q Consensus 416 ~~m~~~-----~~------~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~-----~~~g~~ 478 (534)
+++... |- .-=...|..-|++|...++-.....++++...- .--|..... .+|+-| .+.|++
T Consensus 169 kqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~f 247 (440)
T KOG1464|consen 169 KQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEF 247 (440)
T ss_pred HHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchH
Confidence 555321 10 011345777788888888888788888876542 223444433 334433 467888
Q ss_pred HHHHHHHHHHHH
Q 009470 479 NNAYKYIREMIE 490 (534)
Q Consensus 479 ~~A~~~~~~~~~ 490 (534)
++|-.-|-++-+
T Consensus 248 e~AhTDFFEAFK 259 (440)
T KOG1464|consen 248 EKAHTDFFEAFK 259 (440)
T ss_pred HHHHhHHHHHHh
Confidence 888655544443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.45 E-value=13 Score=32.27 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=66.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH
Q 009470 436 MFATSKSTDMVLKLKKEMEENEVEPN-----VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLR 509 (534)
Q Consensus 436 ~~~~~g~~~~a~~l~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 509 (534)
-+.+.|++++|..-|.+..+. +++. ...|..-..++.+.+.++.|++-..+.++.+ |+ ......-..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~---pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN---PTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC---chhHHHHHHHHHHHH
Confidence 356789999999999999886 2332 2344445567788999999999999998853 43 233344456788
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 009470 510 RAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 510 ~~g~~~~a~~~~~~~~~~g 528 (534)
+..++++|.+-++++.+..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 8999999999999988764
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.24 E-value=43 Score=33.45 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=31.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 471 MYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
.|...|++-.|.+.|.+.+.. +.-++..|..+..+|...
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 567889999999999988886 467788899998888543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.04 E-value=6.7 Score=29.77 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
+..+-++.+....+.|+..+..+.+++|.+.+++..|+++|+....+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455555556666777777777777777777777777777777766542 22225665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.93 E-value=37 Score=32.52 Aligned_cols=80 Identities=9% Similarity=0.023 Sum_probs=36.1
Q ss_pred CCChhhHHHHHHHHHHcCC------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 354 EADTITYNFLIDCHCKDGK------------LEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
+-|..+|-.++..--..-. .+.-+.+++++.+.+. -+......++..+.+..+.++..+.++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666666643222111 2233344455444422 23444444455555555555555555555443
Q ss_pred CCCCCHHHHHHHHH
Q 009470 422 KCEPNTVTYNILMQ 435 (534)
Q Consensus 422 ~~~p~~~~~~~li~ 435 (534)
.. -+...|...+.
T Consensus 95 ~~-~~~~LW~~yL~ 107 (321)
T PF08424_consen 95 NP-GSPELWREYLD 107 (321)
T ss_pred CC-CChHHHHHHHH
Confidence 21 13444444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=84.71 E-value=1.8 Score=25.08 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666777777777766665
|
... |
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.65 E-value=34 Score=31.84 Aligned_cols=75 Identities=11% Similarity=0.265 Sum_probs=39.3
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 368 CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK-MKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 368 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
.+...+++.....++-.++.--|+..+...+-.+.+...++.+-.++..+ ..+ ...+|..|+.++|..|+.+..
T Consensus 266 s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHH
Confidence 34445566655555444443345665444444444444444433332221 111 344688888888888887754
Q ss_pred H
Q 009470 447 L 447 (534)
Q Consensus 447 ~ 447 (534)
+
T Consensus 341 L 341 (412)
T KOG2297|consen 341 L 341 (412)
T ss_pred H
Confidence 3
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.62 E-value=15 Score=27.85 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=24.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 260 RGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 260 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
..+...|++++|..+.+.+ +.||...|-.|.. .+.|..+++...+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3444555555555544433 2455555444332 24455555555555555444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.61 E-value=56 Score=34.28 Aligned_cols=75 Identities=8% Similarity=0.114 Sum_probs=27.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 377 IKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEM 453 (534)
Q Consensus 377 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 453 (534)
...++++..+-.-.+......++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+.+.+..+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44444444443333445556666666666666666666665533211 1223344444455555555444444333
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.60 E-value=5.2 Score=37.54 Aligned_cols=52 Identities=17% Similarity=0.032 Sum_probs=25.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKM 418 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 418 (534)
-|.+.|.+++|...|...+... +-+.+++..-..+|.+.+.+..|+.--...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 3555555555555555554432 114455555555555555555444443333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=84.59 E-value=16 Score=31.16 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 478 WNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 530 (534)
+++|.++|+++.+ ..|+..+|+.-+.... +|-++..++.++|..
T Consensus 96 F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVD---EDPNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHh---cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 6777788888877 4689888888776653 466666666666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.23 E-value=2.9 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
+++.|...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.14 E-value=35 Score=31.59 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 467 ILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 467 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
.....|...|.+.+|.++.++.+.-. +.+...+..++..|...|+--.+..-++++
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445555566666666555555532 233444455555555555544444444443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.27 E-value=67 Score=34.10 Aligned_cols=374 Identities=11% Similarity=0.126 Sum_probs=184.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC----CCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMKSR----NVEITVDTFSIL-VRRYVRAGLAAEAVHAFNRMEEYG---CAPDKIAFS 222 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~ 222 (534)
...++.++.+.+.-. |...+++..+. +..+-...|..+ +..+...+++..|++.++.+...- ..+-..++.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 345567777666665 88888776544 111223344444 333334479999999998876432 234444455
Q ss_pred HHHHHHH--hcCCHHHHHHHHHHhhc---c-------CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH-------C
Q 009470 223 IVISILC--RKRRASEAQSFFDSLKD---K-------FEPDVIVYTNLVRGWC--RAGNISEAERVFREMKM-------A 281 (534)
Q Consensus 223 ~ll~~~~--~~g~~~~A~~~~~~~~~---~-------~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~-------~ 281 (534)
.++.+.. +.+..+++.+..+.+.. . ..|...+|..+++.++ ..|+++.+...++++.+ .
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~ 261 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKS 261 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 5555444 34555666666665421 1 2345667777766554 56777676666555432 1
Q ss_pred C-C---C-------------------CCHHH---------HHHHHHH--HHHcCCHHHHHHHHHH-------HH-HcCCC
Q 009470 282 G-I---Q-------------------PNVYT---------YSIVIDA--LCRCGQITRAHDVFAE-------ML-EVGCE 319 (534)
Q Consensus 282 g-~---~-------------------p~~~~---------~~~ll~~--~~~~g~~~~A~~~~~~-------m~-~~~~~ 319 (534)
. . . +.... ..-++.+ ++..|..++|.+++++ .. .....
T Consensus 262 ~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~ 341 (608)
T PF10345_consen 262 PSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSA 341 (608)
T ss_pred ccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCC
Confidence 0 0 0 01111 1112222 2334544455555544 44 11111
Q ss_pred C--------CHHHHHHHHH---------HHHHcCChhHHHHHHHHHHHcCC-CC-----ChhhHHH--HHHHHHHcCChH
Q 009470 320 P--------NSITFNNLMR---------VHVKASRTEKVLQVYNQMKRLGC-EA-----DTITYNF--LIDCHCKDGKLE 374 (534)
Q Consensus 320 ~--------~~~~~~~li~---------~~~~~g~~~~a~~~~~~~~~~g~-~~-----~~~~~~~--li~~~~~~g~~~ 374 (534)
+ +...|...+. ..+-.+++..|...++.+.+..- .| ....+.. ..-.+...|+.+
T Consensus 342 ~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~ 421 (608)
T PF10345_consen 342 PSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLE 421 (608)
T ss_pred CCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHH
Confidence 1 1112222222 23447889999999998876421 11 1122222 333345679999
Q ss_pred HHHHHHH--------HHHHCCCCCCHHHHHHH--HHHHHhcC--ChhH--HHHHHHHHHhC---CCCCCHHHHHHH-HHH
Q 009470 375 DAIKVLN--------SMVRKGCNPNASTFNMI--FRCISKLG--DVNG--AHRMYGKMKDL---KCEPNTVTYNIL-MQM 436 (534)
Q Consensus 375 ~A~~~~~--------~m~~~~~~~~~~~~~~l--~~~~~~~g--~~~~--A~~~~~~m~~~---~~~p~~~~~~~l-i~~ 436 (534)
.|...|. .....+...+..++..+ +-.+...+ ..++ +.++++.+... ....+..++..+ +.+
T Consensus 422 ~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~ 501 (608)
T PF10345_consen 422 AALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLAT 501 (608)
T ss_pred HHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHH
Confidence 9999997 44455554444444332 11222222 2223 66677666431 111233344433 434
Q ss_pred HHhcC--CHHHHHHHHHHHH-HC--CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--CHHHHH----
Q 009470 437 FATSK--STDMVLKLKKEME-EN--EVEPN---VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP--GSSVYE---- 502 (534)
Q Consensus 437 ~~~~g--~~~~a~~l~~~m~-~~--~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~---- 502 (534)
+.... ...++...+.+.. .. ....+ ..+++.+...+. .|+..+..+..........-.| ....|.
T Consensus 502 ~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~ 580 (608)
T PF10345_consen 502 YNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVAS 580 (608)
T ss_pred HhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 43222 1224443333221 11 11111 123333333344 6887776665554433221112 334453
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 503 -MVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 503 -~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
.+.+.+...|+.++|.+...+..+
T Consensus 581 ~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 581 GMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 334457788999999999887754
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.72 E-value=15 Score=32.02 Aligned_cols=80 Identities=8% Similarity=0.029 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHcCCH
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKC--LKPGSSVYEMVLQQLRRAGQL 514 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~ 514 (534)
+.+.|+ ++|.+.|-.+...+.--+......+...|. ..+.++|++++.++.+... -.+|+..+..|+..+.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 457777777777665555555555555444 5677888888887776432 246778888888888888888
Q ss_pred HHHH
Q 009470 515 QKHE 518 (534)
Q Consensus 515 ~~a~ 518 (534)
++|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8775
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=82.44 E-value=56 Score=32.65 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYT 289 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~ 289 (534)
.+.+.|+.++..|.+.|..|....
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~ 267 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIA 267 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH
Confidence 556666666666666655544333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=81.95 E-value=4.6 Score=23.16 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 499 SVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
..+..+...+...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45778889999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.74 E-value=2.6 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=14.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 444555566666666666666654
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.61 E-value=9.2 Score=30.29 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 009470 204 HAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYT 256 (534)
Q Consensus 204 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 256 (534)
+.++.+...++.|++......++++-+.+++..|.++|+-++.+..+....|-
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~ 122 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYP 122 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHH
Confidence 33444444555566666666666666666666666666655554443333333
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.55 E-value=49 Score=30.72 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 325 FNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
++...+.|..+|.+.+|.++.+...... +.+...+..++..+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344455666666666666666665554 4555556666666666666555555555443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.48 E-value=14 Score=32.53 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHH
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG--CEADTITYNFLIDC 366 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~ 366 (534)
.+.-+..+.+.+.+.+++...++-++.. +.|..+-..++..+|-.|++++|..-++-.-+.. ..+....|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455667777888888888877776664 3455566677788888888888877666554432 23445566666654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=51 Score=30.86 Aligned_cols=201 Identities=6% Similarity=-0.035 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHcCCCCC
Q 009470 251 DVIVYTNLVRGWCRAGNI----SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ-----ITRAHDVFAEMLEVGCEPN 321 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-----~~~A~~~~~~m~~~~~~~~ 321 (534)
|...-...+.+++..|+. +++...+..+... .++...-...+.++...+. ..++...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444445555555542 3455555555322 2344444344444433321 1223333333332 224
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 322 SITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDG-KLEDAIKVLNSMVRKGCNPNASTFNMIFR 400 (534)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 400 (534)
...-...+.++.+.++ +++...+-.+.+ .+|..+-...+.++.+.+ +..++...+..+... ++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHH
Confidence 4444455666666665 344555544443 244444444455554442 234555555555543 46666666777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
++.+.|+. .|...+-+..+.+ + .....+.++...|.. +|...+..+.+. .+|..+-...+.+|
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 77777763 4555554444432 2 233566667777774 566666666653 34655555555544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.38 E-value=1.5e+02 Score=36.16 Aligned_cols=120 Identities=17% Similarity=0.093 Sum_probs=82.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.|-.+-..|+..+++|...-+...-. . . .....-|......|++..|...|+.+.+.+ ++....++.++....
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~-a--~---~sl~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml 1494 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRF-A--D---PSLYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSML 1494 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhh-c--C---ccHHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhh
Confidence 34444458999999998877776311 1 1 123344556677899999999999999865 344777888888888
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNL-VRGWCRAGNISEAERVFR 276 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 276 (534)
..|.++.++-..+-+.....+....++.+ +.+-.+.++++.......
T Consensus 1495 ~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1495 AIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred cccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88888888887776665555555555543 444567788877776655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.35 E-value=11 Score=35.60 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=41.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.|.++|.+++|++.|....... +-+.+++..-..+|.+...+..|+.-.+........-+..|..-+.+-...|...+|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556666666666665544321 225555555555666665555554444433222111223333333333333444444
Q ss_pred HHHHHHHHH
Q 009470 272 ERVFREMKM 280 (534)
Q Consensus 272 ~~~~~~m~~ 280 (534)
.+-++...+
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 444444433
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.01 E-value=51 Score=30.63 Aligned_cols=64 Identities=5% Similarity=0.123 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 283 IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV-GCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
..++..+...++..+++.+++.+-.++++..... +..-|...|..+|+...+.|+..-..++.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 3445555555666666666666666666555443 334455556666666666666555544444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 534 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 4e-08 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 6e-06 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 88.3 bits (217), Expect = 2e-18
Identities = 27/252 (10%), Positives = 71/252 (28%), Gaps = 5/252 (1%)
Query: 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVH 204
+ + ++ +A D + + + L++
Sbjct: 54 SGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQA 113
Query: 205 AFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE----PDVIVYTNLVR 260
+ + + + + A + + + +Y ++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 261 GWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA-HDVFAEMLEVGCE 319
GW R G E V +K AG+ P++ +Y+ + + R Q +M + G +
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233
Query: 320 PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKV 379
++ L+ +A+ + V +V + + L+ K+
Sbjct: 234 LQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293
Query: 380 LNSMVRKGCNPN 391
+ C
Sbjct: 294 HLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 87.2 bits (214), Expect = 4e-18
Identities = 29/261 (11%), Positives = 71/261 (27%), Gaps = 13/261 (4%)
Query: 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMR 330
A + + A P + ++ + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 331 VHVKA---SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387
+ +L V++ ++ YN ++ + G ++ + VL + G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 388 CNPNASTFNMIFRCISKLG-DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446
P+ ++ +C+ + D R +M + + +L+ + V
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 447 LKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506
K+K P L+ + K P ++ + +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL---------HLPLKTLQCLFEK 306
Query: 507 QLRRAGQLQKHEELVEKMVDR 527
QL + VEK
Sbjct: 307 QLHMELASRVCVVSVEKPTLP 327
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.6 bits (171), Expect = 7e-13
Identities = 19/170 (11%), Positives = 54/170 (31%), Gaps = 5/170 (2%)
Query: 369 KDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRM---YGKMKDLKCEP 425
L+ + + F+C + AH + + + +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAY-KY 484
YN +M +A + ++ + +++ + P++ +Y + +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 485 IREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGFTARPL 534
+ +M +E K + ++L + RA L+ ++ P+
Sbjct: 224 LEQMSQEGL-KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 4e-10
Identities = 65/462 (14%), Positives = 134/462 (29%), Gaps = 120/462 (25%)
Query: 128 LLQVLSFFNWVTARPEFVHSPDLYH--EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDT 185
+L V FV + D +M + D ++ S++
Sbjct: 21 ILSVF--------EDAFVDNFDCKDVQDMPKSILSKEEID------HIIMSKDAVSGTLR 66
Query: 186 FSILVRRYVRAGLAAEAVHAFNRMEE-----YGCAPDKIAFSIVISILCRKRRASEAQSF 240
+ E V F +EE Y I +R+ S
Sbjct: 67 LFWTLLSK-----QEEMVQKF--VEEVLRINYKFLMSPIKT--------EQRQPSMMTRM 111
Query: 241 FDSLKDKFEPDVIVYT--NLVRGWCRAGNISEAERVFREMKMA--GIQPNVYTYSIVIDA 296
+ +D+ D V+ N+ R + + +++ A ++P ++ID
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSR-----------LQPYLKLRQALLELRPAKN---VLIDG 157
Query: 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD 356
+ G+ A DV I + NL + + E + ++ Q+
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 357 TITYNFLIDCHCKDGKLEDAIK---------VLNSMVRKGCNPN-ASTFNMIFRC----- 401
+ N + H +L +K VL + V N + FN C
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-V---QNAKAWNAFN--LSCKILLT 271
Query: 402 ---ISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM-VLKLKKEMEENE 457
++ A + + T+T + + + K D L +E+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDH---HSMTLTPDEVKSLLL--KYLDCRPQDLPREVL--T 324
Query: 458 VEPNVNTYRILITMYC-----GMGHWNNAYKYI-----REMIEE--KCLKPG--SSVYEM 503
P +++ G+ W+N +K++ +IE L+P +++
Sbjct: 325 TNP------RRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 504 -------------VLQQLRRAGQLQKHEELVEKMVDRGFTAR 532
+L + +V K+ +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 9e-09
Identities = 80/524 (15%), Positives = 145/524 (27%), Gaps = 194/524 (37%)
Query: 53 SPEETLISEKFHSLIKDHHRKNPNPSSNSNPSLNPDFTIPSLSLGFSQISTAHSISPSTV 112
SPE L E L ++ +PN +S S+ S N I HSI
Sbjct: 194 SPETVL--EMLQKL---LYQIDPNWTSRSDHSSNIKLRI-------------HSIQAELR 235
Query: 113 RHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFID 172
R + K + LL VL ++ + F+L+
Sbjct: 236 RLLKSK----PYENCLL-VLL---------------NVQNAKA-----WNAFNLSCKI-- 268
Query: 173 LMKSRNVEITVDTFSILVRRYVR-----AGLA-AEAVHAFNRMEEYGCAPDKI---AFSI 223
L+ +R ++T D S ++ L E + C P + +
Sbjct: 269 LLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREVLTT 325
Query: 224 ---VISIL--------CR----KRRASEA-----QSFFDSLKDK-----------FEPDV 252
+SI+ K + +S + L+ F P
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 253 -IVYTNLVRGWCRAGNISEAERVFREMK---MAGIQPNVYTYSIVIDALCRCGQITRAHD 308
I L W S+ V ++ + QP T SI
Sbjct: 386 HIPTILLSLIWF-DVIKSDVMVVVNKLHKYSLVEKQPKESTISI--------------PS 430
Query: 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE------ADTITYNF 362
++ E+ + N +H ++ YN K + D Y+
Sbjct: 431 IYLELK--------VKLENEYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMI---FRCISKLGDVNGAHRMYGKMK 419
+ H K+ + + + F M+ FR + +
Sbjct: 477 IGH-HLKNIEHPE---------------RMTLFRMVFLDFRFLEQ--------------- 505
Query: 420 DLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479
K ++ +N A+ + + +LK + + N Y L+
Sbjct: 506 --KIRHDSTAWN------ASGSILNTLQQLKFY--KPYICDNDPKYERLV---------- 545
Query: 480 NAYKYIREMIEEKCLK-------------PGSSVYEMVLQQLRR 510
NA IEE + +++E +Q++R
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 2e-06
Identities = 35/265 (13%), Positives = 77/265 (29%), Gaps = 20/265 (7%)
Query: 163 QFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFS 222
+ + +K + E V+ L R Y+ + AP+ A
Sbjct: 14 SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVR 69
Query: 223 IVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC--RAGNISEAERVFREMKM 280
+ L R + D + L+ N A R +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD- 128
Query: 281 AGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNN---LMRVHVKASR 337
++ ++ + L + ++ A +M + + ++ + + +
Sbjct: 129 -----SLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEK 181
Query: 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG-CNPNASTFN 396
+ ++ +M C + N CH G+ E A VL + K +P N
Sbjct: 182 LQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL-IN 239
Query: 397 MIFRCISKLGDVNGAHRMYGKMKDL 421
++ +R ++KD
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDA 264
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 38/299 (12%), Positives = 85/299 (28%), Gaps = 31/299 (10%)
Query: 236 EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVID 295
S E + N+ +A+ + + + + P +Y +
Sbjct: 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSYIFLAL 284
Query: 296 ALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA 355
L F + +++ E T+ + +++ + + + + + L
Sbjct: 285 TLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-NPE 342
Query: 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN-ASTFNMIFRCISKLGDVNGAHRM 414
+ Y L K GK ++ N K P ++ GD + A +
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400
Query: 415 YGKMKDLKCEPNTVT--YNIL-----MQMFATSKSTDMVLKLKKEMEEN--------EVE 459
Y + E I + A S D +++ E++
Sbjct: 401 YDIA--KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458
Query: 460 PN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMV-LQQLRRAGQLQK 516
P L + M + A + + L ++ E + A ++QK
Sbjct: 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI---LAR--TMDEKLQATTFAEAAKIQK 512
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 4e-04
Identities = 34/241 (14%), Positives = 75/241 (31%), Gaps = 11/241 (4%)
Query: 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVI-DALCRCGQITRAHDV 309
NL GNI EA R++R K + P + L + G++ A
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYR--KALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 310 FAEMLEVGCEPNS-ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC 368
+ E + + P ++N+ + + LQ Y + ++ A ++ L H
Sbjct: 66 YKEAIRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHK 122
Query: 369 KDGKLEDAIKVLNSMVRKGCNPN-ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT 427
G + +AI + ++ P+ + + C+ + D K+ + +
Sbjct: 123 DSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE 180
Query: 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIRE 487
+ S + +K + E ++ +L
Sbjct: 181 KNRLPSVHPH-HSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLR 239
Query: 488 M 488
+
Sbjct: 240 V 240
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.56 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.42 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.13 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.01 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.01 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.98 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.82 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.8 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.78 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.77 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.7 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.62 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.57 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.56 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.49 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.41 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.39 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.37 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.35 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.3 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.3 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.3 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.3 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.28 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.25 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.25 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.24 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.18 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.18 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.13 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.07 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.06 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.04 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.02 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.98 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.95 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.9 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.86 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.78 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.78 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.77 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.65 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.63 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.62 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.59 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.59 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.35 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.28 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.28 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.18 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.89 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.73 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.62 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.56 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.44 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.43 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.43 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.38 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.34 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.31 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.21 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.14 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.11 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.06 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.51 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 95.4 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.2 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.95 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.42 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.4 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.94 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.56 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.33 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.04 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.8 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.77 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.73 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.5 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.57 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.18 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.02 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.57 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.6 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.33 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.25 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.47 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.27 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.93 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.34 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 85.25 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.94 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.51 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.47 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.38 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.11 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.71 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 81.54 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.78 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 80.45 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.42 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=303.58 Aligned_cols=390 Identities=8% Similarity=0.022 Sum_probs=303.4
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC---------------CCCCCHHHHHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR---------------NVEITVDTFSILVR 191 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---------------~~~~~~~~~~~li~ 191 (534)
++.+|+.+|+.+... +.++.+++.++.+|.+.|++++|.++|+++... +.+.+..+|+.++.
T Consensus 132 ~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (597)
T 2xpi_A 132 DYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQ 208 (597)
T ss_dssp CHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHH
Confidence 455555555554321 345556666666666666666666666532111 11223556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------------------------------HHHHHhcCC
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV--------------------------------------ISILCRKRR 233 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------------------------------l~~~~~~g~ 233 (534)
+|.+.|++++|+++|++|.+.+ +.+...+..+ +..|.+.|+
T Consensus 209 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 287 (597)
T 2xpi_A 209 VYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE 287 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch
Confidence 6666666666666666665543 1122222222 233345556
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+++|.++|+++... +++..+|+.++.+|.+.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|.++++++
T Consensus 288 ~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 288 LRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp HHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666665543 478889999999999999999999999999876533 6778899999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009470 314 LEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS 393 (534)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 393 (534)
.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 442 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHL 442 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSH
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchH
Confidence 8664 5578899999999999999999999999998764 45688999999999999999999999999998753 4788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN----EVEPN--VNTYRI 467 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~--~~~~~~ 467 (534)
+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++++++.+. +..|+ ..+|..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 99999999999999999999999998765 347899999999999999999999999999875 66777 789999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++++..
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999875 4578899999999999999999999999998864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=301.78 Aligned_cols=393 Identities=7% Similarity=-0.043 Sum_probs=344.9
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 124 HGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV 203 (534)
Q Consensus 124 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 203 (534)
..+.+.+|+..|+.+... .++..++..++..|.+.|++++|..+|+.+... +.+..+++.++.+|.+.|++++|+
T Consensus 96 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 170 (597)
T 2xpi_A 96 MQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGAL 170 (597)
T ss_dssp HTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHH
Confidence 345789999999998853 347788999999999999999999999988654 568899999999999999999999
Q ss_pred HHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH----------
Q 009470 204 HAFNRME-EY--------------GCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNL---------- 258 (534)
Q Consensus 204 ~~~~~m~-~~--------------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l---------- 258 (534)
++|+++. .. |.+.+..+|+.++.+|.+.|++++|.+.|+++....+.+...+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 250 (597)
T 2xpi_A 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADE 250 (597)
T ss_dssp HHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHH
T ss_pred HHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchh
Confidence 9998532 21 2234578999999999999999999999999987655555555444
Q ss_pred ----------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 259 ----------------------------VRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVF 310 (534)
Q Consensus 259 ----------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 310 (534)
+..|.+.|++++|.++|+++.+. .++..+++.++.+|.+.|++++|.++|
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 55566889999999999999865 578999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009470 311 AEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNP 390 (534)
Q Consensus 311 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 390 (534)
+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+... .
T Consensus 329 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 405 (597)
T 2xpi_A 329 TKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-Q 405 (597)
T ss_dssp HHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-C
Confidence 9999876 4478889999999999999999999999998764 66789999999999999999999999999988643 3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++++++.+.. +.+..+|..++.
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 483 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGV 483 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 68899999999999999999999999999875 3488999999999999999999999999999864 557899999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 471 MYCGMGHWNNAYKYIREMIEEK---CLKPG--SSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
.|.+.|++++|+++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999998862 24677 7899999999999999999999999998875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-28 Score=238.60 Aligned_cols=376 Identities=14% Similarity=0.080 Sum_probs=292.7
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVH 204 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 204 (534)
.+++++|+..+..+.+.. +.+...+..+..++.+.|++++|...++...+.. +.+..+|..+...|.+.|++++|++
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456788888888776542 3456677777788888888888888888777765 5677888888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 009470 205 AFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ 284 (534)
Q Consensus 205 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 284 (534)
.|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++....+.+...+..+...+...|++++|.+.|+++.+...
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p- 166 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP- 166 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-
Confidence 888887753 334567888888888888888888888887776666777788888888888888888888888877532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 009470 285 PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLI 364 (534)
Q Consensus 285 p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 364 (534)
-+..+|..+...+.+.|++++|.+.|+++.+.+ +.+...|..+...+...|++++|...+++..+.. +.+..++..+.
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 244 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA 244 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH
Confidence 256778888888888888888888888888765 3457778888888888888888888888887764 44577788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 009470 365 DCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTD 444 (534)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 444 (534)
.+|.+.|++++|...++++.+.+. .+..+|..+..++.+.|++++|.+.++++.+.. +.+..++..+...+...|+++
T Consensus 245 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888887643 256778888888888888888888888887754 457778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG 512 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 512 (534)
+|.+.++++.+.. +.+..++..+...+.+.|++++|++.++++++.. +.+...|..+...+...|
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHhHHHHHHHcc
Confidence 8888888887752 4567788888888888888888888888888743 334566666666666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-27 Score=236.36 Aligned_cols=364 Identities=12% Similarity=0.046 Sum_probs=324.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778999999999999988875 5577888999999999999999999999988754 5678899999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+++|.+.|+++....+.+..+|..++..+.+.|++++|.+.|+++.+.+.. +...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999998877778889999999999999999999999999886422 4567778888899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009470 314 LEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS 393 (534)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 393 (534)
.+.. +.+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...++++.+... -+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHH
Confidence 9875 4468899999999999999999999999999875 55678899999999999999999999999988753 3678
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
++..+..++.+.|++++|.+.++++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 3367889999999999999999999999999864 678899999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 474 GMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+.|++++|++.++++++.. +.+...+..+...+.+.|++++|.+.++++++.
T Consensus 317 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999853 456788999999999999999999999999874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=263.22 Aligned_cols=186 Identities=20% Similarity=0.378 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ---------ITRAHDVFAEMLEVGCEPNSIT 324 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~A~~~~~~m~~~~~~~~~~~ 324 (534)
.++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. +++|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455555555555555555555555555555555555555555554433 3445555555555555555555
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009470 325 FNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK 404 (534)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 404 (534)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 009470 405 LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT 439 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 439 (534)
.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=261.74 Aligned_cols=206 Identities=14% Similarity=0.156 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHHhcCC---------H
Q 009470 200 AEAVHAFNRMEEYGCAPDK-IAFSIVISILCRKRRASEAQSFFDSLKD-KFEPDVIVYTNLVRGWCRAGN---------I 268 (534)
Q Consensus 200 ~~A~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~---------~ 268 (534)
..+..+.+++.+.+....+ ..++.+|++|++.|++++|.++|++|.+ +++||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666778777776554 4688999999999999999999999975 799999999999999987764 7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009470 349 KRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 349 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 405 (534)
.+.|+.||..+|++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998864
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-24 Score=216.88 Aligned_cols=405 Identities=9% Similarity=0.027 Sum_probs=299.4
Q ss_pred HHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 112 VRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVR 191 (534)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 191 (534)
....+.....+...+++.+|+..|+.+.... |++..+..+..++.+.|++++|...++++.+.+ +.+..+|..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 3444555555556678999999999998754 478899999999999999999999999988876 567789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh---------------------------
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSL--------------------------- 244 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~--------------------------- 244 (534)
+|.+.|++++|++.|+++.+.+ +++......++..+........+.+.+..+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999998865 334444444444333322222222211100
Q ss_pred -----------hcc-------CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CCCHHHH
Q 009470 245 -----------KDK-------FEPDVIVYTNLVRGWCR---AGNISEAERVFREMKM-----AGI--------QPNVYTY 290 (534)
Q Consensus 245 -----------~~~-------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~p~~~~~ 290 (534)
... .+.+...+......+.. .|++++|...|+++.+ ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 000 01224455555555554 7889999998888877 311 1234567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD 370 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 370 (534)
..+...+...|++++|...++++.+... +...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHh
Confidence 7788888888999999999988887753 37778888888888899999999888888764 45677888888888889
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 371 GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLK 450 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~ 450 (534)
|++++|...++++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999888877533 56778888888888899999999888887654 235677888888888889999999888
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 451 KEMEENEV-EPN----VNTYRILITMYCG---MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVE 522 (534)
Q Consensus 451 ~~m~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 522 (534)
+++.+... .++ ...+..+...+.. .|++++|.+.++++++.. +.+...+..+...+.+.|++++|.+.++
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88866321 111 3477888888888 899999999998888864 4456778888888888899999999888
Q ss_pred HHHHcC
Q 009470 523 KMVDRG 528 (534)
Q Consensus 523 ~~~~~g 528 (534)
++++.+
T Consensus 474 ~a~~~~ 479 (514)
T 2gw1_A 474 ESADLA 479 (514)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 887754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-23 Score=209.75 Aligned_cols=362 Identities=11% Similarity=0.080 Sum_probs=282.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...|...|++++|++.|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 356678888888889999999999999888764 4578888999999999999999999999988765 45677888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDV---IVYTNL------------VRGWCRAGNISEAERVFREMKMAGIQPNVYTY 290 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 290 (534)
..|.+.|++++|.+.|+++....+.+. ..+..+ ...+.+.|++++|...|+++.+.. +.+...+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 899999999999999998887666666 666665 444888999999999999998764 3367888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH-------
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFL------- 363 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l------- 363 (534)
..+..+|.+.|++++|++.++++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 889999999999999999999988764 4578889999999999999999999999998764 3344455444
Q ss_pred -----HHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 009470 364 -----IDCHCKDGKLEDAIKVLNSMVRKGCNPN----ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILM 434 (534)
Q Consensus 364 -----i~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 434 (534)
...+.+.|++++|...++++.+.... + ...+..+..++.+.|++++|.+.++++.+.. +.+...|..+.
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 78889999999999999999886422 2 3478888899999999999999999988754 34788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhCC-----CHHHHHHHHHHHHHcCCCCCC
Q 009470 435 QMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM------------YCGMG-----HWNNAYKYIREMIEEKCLKPG 497 (534)
Q Consensus 435 ~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~~~~~~~~~p~ 497 (534)
.+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+.++++... ..|+
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd 413 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPD 413 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGG
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCC
Confidence 99999999999999999998853 3345666666532 33334 567778888863332 2333
Q ss_pred H-----------HHHHHHHHHHHHcCCHHHH
Q 009470 498 S-----------SVYEMVLQQLRRAGQLQKH 517 (534)
Q Consensus 498 ~-----------~~~~~l~~~~~~~g~~~~a 517 (534)
. ..+..+..+|...|+.++.
T Consensus 414 ~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 414 NFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2 2455666666666665443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-23 Score=208.16 Aligned_cols=343 Identities=13% Similarity=0.107 Sum_probs=280.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 170 FIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 170 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
.+.++...+ +.+...+..++..+.+.|++++|+++|+++.+.. +.+..++..+..++...|++++|...|+++....+
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 344444333 4567899999999999999999999999998764 55788999999999999999999999999988778
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHH
Q 009470 250 PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV---YTYSIV------------IDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------l~~~~~~g~~~~A~~~~~~m~ 314 (534)
.+..++..++..|.+.|++++|.+.|+++.+.+.. +. ..+..+ ...+.+.|++++|+..++++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999876322 33 455544 445889999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 009470 315 EVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAST 394 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 394 (534)
+.. +.+...+..+..+|.+.|++++|...|+++.+.. +.+..++..++.+|...|++++|...++++.+.... +...
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 247 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC 247 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHH
Confidence 875 4578899999999999999999999999998764 567889999999999999999999999999876432 4444
Q ss_pred HHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 395 FNMI------------FRCISKLGDVNGAHRMYGKMKDLKCEPN-----TVTYNILMQMFATSKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 395 ~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 457 (534)
+..+ ...+.+.|++++|.+.|+++.+.. |+ ...|..+...+.+.|++++|...++++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5444 788999999999999999998753 44 4578889999999999999999999998763
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH------------HHHcC-----CHHHHHHH
Q 009470 458 VEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQ------------LRRAG-----QLQKHEEL 520 (534)
Q Consensus 458 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~a~~~ 520 (534)
+.+...|..+..+|...|++++|.+.++++++.. +-+...+..+..+ |...| +.+++.+.
T Consensus 326 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~ 402 (450)
T 2y4t_A 326 -PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHH
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHH
Confidence 5578999999999999999999999999999843 2345555555532 22333 55667777
Q ss_pred HHH
Q 009470 521 VEK 523 (534)
Q Consensus 521 ~~~ 523 (534)
+++
T Consensus 403 y~~ 405 (450)
T 2y4t_A 403 YRK 405 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-23 Score=208.84 Aligned_cols=365 Identities=10% Similarity=0.020 Sum_probs=287.9
Q ss_pred cCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 123 RHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEA 202 (534)
Q Consensus 123 ~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 202 (534)
...+.+.+|+..|+.+.+.. +.+...+..+..++.+.|++++|...|+.+...+ +.+......++..+........+
T Consensus 50 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 126 (514)
T 2gw1_A 50 VSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKL 126 (514)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHH
Confidence 34567899999999988753 4577899999999999999999999999998886 34444444555544443333333
Q ss_pred HHHHHHHHHcC-----------------------------------C---------CCCHHHHHHHHHHHHh---cCCHH
Q 009470 203 VHAFNRMEEYG-----------------------------------C---------APDKIAFSIVISILCR---KRRAS 235 (534)
Q Consensus 203 ~~~~~~m~~~g-----------------------------------~---------~~~~~~~~~ll~~~~~---~g~~~ 235 (534)
.+.+..+...+ . +.+...+......+.. .|+++
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (514)
T 2gw1_A 127 KEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYD 206 (514)
T ss_dssp TTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred HHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHH
Confidence 33332111110 0 1113344444444444 89999
Q ss_pred HHHHHHHHhhc-----c--C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 236 EAQSFFDSLKD-----K--F-------EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 236 ~A~~~~~~~~~-----~--~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
+|...|+++.. . . +.+..++..+...+...|++++|...++++.+.+.. ...+..+...+...|
T Consensus 207 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 207 KADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCC
Confidence 99999998766 2 1 335678889999999999999999999999886533 888899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 285 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp CCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998875 4467789999999999999999999999998875 4567889999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 009470 382 SMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCE-PN----TVTYNILMQMFAT---SKSTDMVLKLKKEM 453 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~~~~a~~l~~~m 453 (534)
++.+... .+...+..+...+...|++++|.+.++++.+.... ++ ...+..+...+.. .|++++|...++++
T Consensus 363 ~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a 441 (514)
T 2gw1_A 363 EAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441 (514)
T ss_dssp HHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred HHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence 9988743 36788999999999999999999999998764311 11 3488899999999 99999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 454 EENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 454 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
.+.. +.+..++..+...+.+.|++++|.+.++++++.. |+..
T Consensus 442 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~ 483 (514)
T 2gw1_A 442 SKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA---RTME 483 (514)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSHH
T ss_pred HHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc---cccH
Confidence 8864 5577889999999999999999999999999954 5543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-21 Score=201.82 Aligned_cols=401 Identities=9% Similarity=0.061 Sum_probs=286.6
Q ss_pred HHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 112 VRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVR 191 (534)
Q Consensus 112 ~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 191 (534)
.......+..+...+++.+|+..|+.+.... +.++..+..+..++.+.|++++|.+.++++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4455555655666778889999999998753 4578899999999999999999999999998876 567889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-------CCCCHH-----------
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK-------FEPDVI----------- 253 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~----------- 253 (534)
.+...|++++|++.|+.+.. .|+.. ...+..+...+...+|...++.+... ..|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 99999999999999964422 23221 12233444455556677777665432 111111
Q ss_pred -------------------HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHH
Q 009470 254 -------------------VYTNLVRGWC--------RAGNISEAERVFREMKMAGIQPN-------VYTYSIVIDALCR 299 (534)
Q Consensus 254 -------------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~ 299 (534)
....+...+. ..|++++|..+++++.+.... + ..++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHh
Confidence 1222222211 124788888888888765322 2 2346666677788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHH
Q 009470 300 CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKV 379 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (534)
.|++++|.+.++++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 88888888888888876 3457778888888888888888888888887765 45677888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-- 457 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-- 457 (534)
++++.+.... +...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 333 ~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 333 FQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 8888876532 56778888888888888888888888887764 3356778888888888888888888888876532
Q ss_pred ---CCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 458 ---VEPNVNTYRILITMYCGM----------GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 458 ---~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
.......+......+.+. |++++|+..++++++.. +.+...+..+...+.+.|++++|.+.++++
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111223344455666666 88888888888888864 455677888888888888888888888888
Q ss_pred HHcC
Q 009470 525 VDRG 528 (534)
Q Consensus 525 ~~~g 528 (534)
++..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 7754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-20 Score=178.32 Aligned_cols=328 Identities=12% Similarity=0.050 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
+.+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344445555555555555555555554443 2344455555555555555555555555554432 22344444555555
Q ss_pred HhcCCHHHHHHHHHHhhccCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFE---PDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
...|++++|...|+++....+ .+...+..+...+. ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHH
Confidence 555555555555555444333 23333333211000 0011122456667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 139 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777776654 3456666677777777777777777777776654 44566777777777777777777777777766
Q ss_pred CCCCCCHHHHH------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 009470 386 KGCNPNASTFN------------MIFRCISKLGDVNGAHRMYGKMKDLKCEPNT----VTYNILMQMFATSKSTDMVLKL 449 (534)
Q Consensus 386 ~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~l 449 (534)
.... +...+. .+...+.+.|++++|.+.++++.+.... +. ..+..+...+...|++++|...
T Consensus 217 ~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5322 222222 3366688899999999999988775422 33 2345577888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH
Q 009470 450 KKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQLR 509 (534)
Q Consensus 450 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 509 (534)
+++..+.. +.+..++..+...+...|++++|.+.++++++. .|+ ...+..+..+..
T Consensus 295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH---NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Confidence 99988863 457888889999999999999999999999885 344 455555554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-20 Score=193.44 Aligned_cols=372 Identities=12% Similarity=0.076 Sum_probs=282.9
Q ss_pred ChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 009470 108 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS 187 (534)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 187 (534)
.|............+...+++.+|+..|+.+.... +.+...+..+..++.+.|++++|...|+.+ .... ....
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~~----~~~~ 127 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL-SLNG----DFDG 127 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C-----------
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcCC----CCCh
Confidence 34333333333333444567999999999998753 457889999999999999999999999744 2221 1223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHH------------------------------HHHHHHHH--
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEY------GCAPDKIAF------------------------------SIVISILC-- 229 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~------g~~~~~~~~------------------------------~~ll~~~~-- 229 (534)
..+..+...+...+|++.++++... ...|+.... ..+...+.
T Consensus 128 ~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 207 (537)
T 3fp2_A 128 ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207 (537)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhh
Confidence 3345566666778888888887542 112222221 11111111
Q ss_pred ------hcCCHHHHHHHHHHhhccCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 230 ------RKRRASEAQSFFDSLKDKFEPDVI-------VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296 (534)
Q Consensus 230 ------~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (534)
..|++++|..+++++....+.+.. ++..+...+...|++++|...++++.+. .|+...+..+...
T Consensus 208 ~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 285 (537)
T 3fp2_A 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH
Confidence 124788999999998876666644 5677778889999999999999999886 4557888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDA 376 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 376 (534)
+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998875 4478889999999999999999999999998875 45678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------C
Q 009470 377 IKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLK-----CEPNTVTYNILMQMFATS----------K 441 (534)
Q Consensus 377 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g 441 (534)
...++++.+... .+...+..+...+...|++++|.+.++++.+.. .......+..+...+... |
T Consensus 364 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 999999998753 367789999999999999999999999987532 111223344556677777 9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++++..
T Consensus 443 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 443 KFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999998864 5577889999999999999999999999999964
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-19 Score=175.19 Aligned_cols=325 Identities=14% Similarity=0.069 Sum_probs=199.3
Q ss_pred HHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 114 HVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRY 193 (534)
Q Consensus 114 ~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 193 (534)
..+.....+...+++.+|+..|+.+.... +.++..+..+...+...|++++|...++++.+.+ +.+...|..+...+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 34444445556678999999999998743 4578899999999999999999999999998875 45778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 194 VRAGLAAEAVHAFNRMEEYGCAP----DKIAFSIV------------ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 194 ~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~l------------l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
...|++++|++.|+++.+.. | +...+..+ ...+...|++++|.+.++++....+.+..++..
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 99999999999999998753 5 33444433 244455555555555555555444445555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 258 LVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~------ 231 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV------ 231 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH------
Confidence 5555555555555555555555432 2234455555555555555555555555554432 1122221111000
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHH
Q 009470 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA----STFNMIFRCISKLGDVNGAHR 413 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 413 (534)
. .......+...+.+.|++++|...++++.+.... +. ..+..+..++.+.|++++|.+
T Consensus 232 -----------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 232 -----------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp -----------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 0 0001112244566667777777777666665322 22 223345566667777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 414 MYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 414 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
.+++..+.. +.+..++..+...+...|++++|...++++.+.. +-+...+..+..+
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 777766543 2356666677777777777777777777776642 2234444444433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-19 Score=173.13 Aligned_cols=291 Identities=9% Similarity=-0.005 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 217 DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA 296 (534)
Q Consensus 217 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 296 (534)
+...+..+...+...|++++|.++|+++....+.+...+..++..+...|++++|..+++++.+... .+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHH
Confidence 3344444555555555555555555555544444455555555555555555555555555554321 134455555555
Q ss_pred HHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHH
Q 009470 297 LCRCG-QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLED 375 (534)
Q Consensus 297 ~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 375 (534)
+...| ++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 55555 5566666665555543 2234455555666666666666666666655543 2334455556666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 376 AIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLK--------CEPNTVTYNILMQMFATSKSTDMVL 447 (534)
Q Consensus 376 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~~a~ 447 (534)
|...++++.+... .+...+..+...+...|++++|...++++.+.. ...+..++..+...+...|++++|.
T Consensus 178 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 6666666665532 245666666666666666666666666665421 1223466777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-HHcCCH
Q 009470 448 KLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL-RRAGQL 514 (534)
Q Consensus 448 ~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~ 514 (534)
..+++..+.. +.+...+..+...+.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCch
Confidence 7777777653 3456677777777777888888888887777643 33555666666666 344554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.1e-17 Score=163.53 Aligned_cols=352 Identities=11% Similarity=0.021 Sum_probs=179.6
Q ss_pred CHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH
Q 009470 147 SPDLYHEMINLAGK----VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR----AGLAAEAVHAFNRMEEYGCAPDK 218 (534)
Q Consensus 147 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~ 218 (534)
++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|+++|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444444 455555555555555443 23455555555555 555555555555555433 34
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 009470 219 IAFSIVISILCR----KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR----AGNISEAERVFREMKMAGIQPNVYTY 290 (534)
Q Consensus 219 ~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 290 (534)
..+..+...|.. .++.++|.+.|++..+. .+...+..|...|.. .+++++|+++|++..+.| +...+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 444445555554 45555555555554332 244455555555554 455555555555555543 34445
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHH
Q 009470 291 SIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK----ASRTEKVLQVYNQMKRLGCEADTITYNF 362 (534)
Q Consensus 291 ~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 362 (534)
..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555554 555555555555555543 33444445544444 455555555555555432 2334444
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009470 363 LIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL-----GDVNGAHRMYGKMKDLKCEPNTVTYNIL 433 (534)
Q Consensus 363 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l 433 (534)
+...|.. .++.++|...|++..+.| +...+..+...+... ++.++|.+.|++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 4444444 555555555555555443 334444445554444 55555555555555543 33444445
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 434 MQMFATSK---STDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 434 i~~~~~~g---~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
...|...| +.++|.+++++..+.| +...+..+...|.. .+++++|+++|++..+.+ +...+..+..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~ 407 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHH
Confidence 54444433 4555555555555543 34445555555555 455555555555555532 2344455555
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcC
Q 009470 507 QLRR----AGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 507 ~~~~----~g~~~~a~~~~~~~~~~g 528 (534)
.|.. .++.++|.+.+++..+.|
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5554 455555555555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-19 Score=171.16 Aligned_cols=288 Identities=10% Similarity=0.018 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...++++....+.+...|..+...+.
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL 101 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 445555555666666666666666655443 2333444455555566666666666666655555555566666666666
Q ss_pred hcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 009470 264 RAG-NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVL 342 (534)
Q Consensus 264 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 342 (534)
..| ++++|.+.|+++.+... .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence 666 66666666666655432 134555566666666666666666666665553 223444555666666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG--------CNPNASTFNMIFRCISKLGDVNGAHRM 414 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 414 (534)
..++++.+.. +.+...+..+...+...|++++|...++++.+.. ......++..+..++...|++++|.+.
T Consensus 180 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666665543 3445566666666666666666666666665431 022345666666666777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCC
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY-CGMGH 477 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~-~~~g~ 477 (534)
++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++ ...|+
T Consensus 259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 77666543 2255666666667777777777777777666542 33555555565555 34444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-19 Score=173.68 Aligned_cols=290 Identities=11% Similarity=0.044 Sum_probs=200.7
Q ss_pred cCCHHHHHH-HHHHhhccCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 231 KRRASEAQS-FFDSLKDKFEP----DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 231 ~g~~~~A~~-~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
.|++++|.+ .+++.....+. +...+..+...+.+.|++++|...|+++.+... .+...+..+...+.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 55544322111 234566666666677777777777777666532 245566666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH---------------HHHHHHHc
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF---------------LIDCHCKD 370 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~---------------li~~~~~~ 370 (534)
|++.++++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777666654 3356666666667777777777777777666553 222222211 23334488
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 371 GKLEDAIKVLNSMVRKGCNP-NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKL 449 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l 449 (534)
|++++|...++++.+..... +..++..+...+...|++++|.+.++++.+.. +.+..+|..+...+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998874322 57888889999999999999999999988764 33678889999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 450 KKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLK---------PGSSVYEMVLQQLRRAGQLQKHEEL 520 (534)
Q Consensus 450 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---------p~~~~~~~l~~~~~~~g~~~~a~~~ 520 (534)
++++.+.. +.+...+..+...|.+.|++++|.+.++++++..+-. .....|..+..++...|+.++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99988763 5567888999999999999999999999988753100 0157889999999999999999988
Q ss_pred HHHHH
Q 009470 521 VEKMV 525 (534)
Q Consensus 521 ~~~~~ 525 (534)
+++.+
T Consensus 353 ~~~~l 357 (368)
T 1fch_A 353 DARDL 357 (368)
T ss_dssp HTTCH
T ss_pred HHHHH
Confidence 77543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-16 Score=158.95 Aligned_cols=338 Identities=15% Similarity=0.100 Sum_probs=292.3
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----c
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGK----VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVR----A 196 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 196 (534)
.+++.+|+..|..+.+. .++..+..+..+|.. .+++++|.+.|++..+.+ +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 45788999999999875 267888999999998 899999999999998876 45788889999988 8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh----cCCH
Q 009470 197 GLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR----KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR----AGNI 268 (534)
Q Consensus 197 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 268 (534)
+++++|+++|++..+.| +...+..+...|.. .++.++|.+.|++..+. .+...+..+...|.. .++.
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 99999999999998875 67788888888887 78999999999997664 478899999999998 8999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhH
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK----ASRTEK 340 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~ 340 (534)
++|.++|++..+.| +...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999998875 56778888888886 889999999999998865 56677778888887 899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChhHHH
Q 009470 341 VLQVYNQMKRLGCEADTITYNFLIDCHCKD-----GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG---DVNGAH 412 (534)
Q Consensus 341 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~ 412 (534)
|..+|++..+.| +...+..+...|... +++++|...+++..+.| +...+..+...+...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998765 566777888888887 89999999999999875 5667788888887766 789999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHH
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKY 484 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~ 484 (534)
++|++..+.+ +...+..+...|.. .+++++|..++++..+.| +...+..+...|.. .+++++|.++
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999864 67888899999988 899999999999999876 57788888888888 8999999999
Q ss_pred HHHHHHcC
Q 009470 485 IREMIEEK 492 (534)
Q Consensus 485 ~~~~~~~~ 492 (534)
|+++.+.+
T Consensus 426 ~~~A~~~~ 433 (490)
T 2xm6_A 426 FDTASTND 433 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 99999865
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=175.35 Aligned_cols=268 Identities=8% Similarity=-0.005 Sum_probs=204.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMR 330 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 330 (534)
+...+..+...+.+.|++++|...|+++.+... .+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445577777788888888888888888776532 356777778888888888888888888877764 345777778888
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCC----------hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 009470 331 VHVKASRTEKVLQVYNQMKRLGCEAD----------TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-PNASTFNMIF 399 (534)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~g~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~ 399 (534)
+|...|++++|...++++.+.. +.+ ...+..+...+...|++++|...++++.+.... .+..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 8888888888888888877653 111 223344578888999999999999999887532 2678899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 400 RCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 400 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
..+...|++++|.+.++++.+.. +.+..+|..+...|...|++++|...++++.+.. +.+..++..+...|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998765 3478899999999999999999999999998863 456888999999999999999
Q ss_pred HHHHHHHHHHHcCCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 480 NAYKYIREMIEEKCLK----------PGSSVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 480 ~A~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
+|.+.++++++...-. .+...|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998743110 0257789999999999999999887765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-19 Score=173.15 Aligned_cols=288 Identities=9% Similarity=-0.018 Sum_probs=186.3
Q ss_pred cCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 196 AGLAAEAVH-AFNRMEEYGC-AP--DKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 196 ~g~~~~A~~-~~~~m~~~g~-~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.|++++|++ .|++..+... .| +...+..+...+.+.|++++|...|+++....+.+..+|..+...+.+.|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 5554432211 01 2234455555566666666666666665555555556666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHHcC
Q 009470 272 ERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNN---------------LMRVHVKAS 336 (534)
Q Consensus 272 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g 336 (534)
...|+++.+... .+..++..+...|...|++++|.+.++++.+.... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 666666655432 24555566666666666666666666666554311 1111110 233334788
Q ss_pred ChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEA--DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRM 414 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 414 (534)
++++|...++++.+.. +. +..++..+...|.+.|++++|...++++.+... .+...+..+...+...|++++|.+.
T Consensus 196 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 196 LFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888887764 22 477888888888888899999888888887642 3577888888888889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhCCCHHHHHH
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN-----------VNTYRILITMYCGMGHWNNAYK 483 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~ 483 (534)
++++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+ ..+|..+..+|...|++++|..
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 98887754 3467788888888999999999999988887642 112 6788889999999999999988
Q ss_pred HHHHHH
Q 009470 484 YIREMI 489 (534)
Q Consensus 484 ~~~~~~ 489 (534)
++++.+
T Consensus 352 ~~~~~l 357 (368)
T 1fch_A 352 ADARDL 357 (368)
T ss_dssp HHTTCH
T ss_pred hHHHHH
Confidence 876443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-16 Score=160.20 Aligned_cols=406 Identities=11% Similarity=0.103 Sum_probs=297.2
Q ss_pred ChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH
Q 009470 108 SPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFS 187 (534)
Q Consensus 108 ~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~ 187 (534)
+......++.. ...+++.+|..+|+.+... ++.+...|...+..+.+.|+++.|..+|+++.... |+...|.
T Consensus 12 ~~~~w~~l~~~----~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~ 83 (530)
T 2ooe_A 12 DLDAWSILIRE----AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWK 83 (530)
T ss_dssp CHHHHHHHHHH----HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHH
T ss_pred CHHHHHHHHHH----HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHH
Confidence 34444444542 2346799999999999874 46688899999999999999999999999998875 4778888
Q ss_pred HHHHHH-HHcCCHHHHHH----HHHHHHH-cCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHhhccCCCC
Q 009470 188 ILVRRY-VRAGLAAEAVH----AFNRMEE-YGCAP-DKIAFSIVISILCR---------KRRASEAQSFFDSLKDKFEPD 251 (534)
Q Consensus 188 ~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 251 (534)
..+... ...|+.++|.+ +|++..+ .|..| +...|...+....+ .|++++|..+|++... .+.+
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~ 162 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMI 162 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCT
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhh
Confidence 877533 45677777665 7777654 35444 46677777776654 6889999999999877 3322
Q ss_pred --HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHH
Q 009470 252 --VIVYTNLVRGWC-------------RAGNISEAERVFREMK------MAG---IQPN--------VYTYSIVIDALCR 299 (534)
Q Consensus 252 --~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~------~~g---~~p~--------~~~~~~ll~~~~~ 299 (534)
...|........ +.+++.+|..++.++. +.. +.|+ ...|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 244444333221 2345677777776632 111 2333 2455555443222
Q ss_pred c----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCChh-------HHHHHHHHHHHcCCCCCh
Q 009470 300 C----GQI----TRAHDVFAEMLEVGCEPNSITFNNLMRVHVK-------ASRTE-------KVLQVYNQMKRLGCEADT 357 (534)
Q Consensus 300 ~----g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~~~~~g~~~~~ 357 (534)
. ++. +++..+|++..... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 2 232 47788999888763 4478888888888776 69987 899999999863234568
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQ 435 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 435 (534)
..|..++..+.+.|++++|..+|+++.+.. |+ ...|...+..+.+.|++++|.++|++..+... .+...|...+.
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~ 398 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHH
Confidence 889999999999999999999999999863 43 35888889989999999999999999987532 23333433322
Q ss_pred H-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHcC
Q 009470 436 M-FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG--SSVYEMVLQQLRRAG 512 (534)
Q Consensus 436 ~-~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g 512 (534)
. +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++++......|+ ...|...+......|
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 2 346899999999999988753 446889999999999999999999999999997544443 457888888889999
Q ss_pred CHHHHHHHHHHHHHc
Q 009470 513 QLQKHEELVEKMVDR 527 (534)
Q Consensus 513 ~~~~a~~~~~~~~~~ 527 (534)
+.+.+..+..++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.2e-18 Score=163.98 Aligned_cols=264 Identities=7% Similarity=-0.008 Sum_probs=121.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
|..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|++.|++.....+.+..+|..++..|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 3444444444444444444444444332 223344444444444444444444444444433333444444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHc
Q 009470 266 GNISEAERVFREMKMAGIQ---------PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCE-PNSITFNNLMRVHVKA 335 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~---------p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~ 335 (534)
|++++|...++++.+.... .....+..+...+.+.|++++|.+.++++.+.... .+...+..+...+.+.
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 4444444444444432100 00111223344555555555555555555544311 1345555555555555
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
|++++|...++++.+.. +.+..+|..+..+|...|++++|...++++.+... .+..++..+..++.+.|++++|.+.|
T Consensus 227 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55555555555555443 33445555555555555555555555555555421 13455555555555556666666555
Q ss_pred HHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 416 GKMKDLKC-----------EPNTVTYNILMQMFATSKSTDMVLKLKKE 452 (534)
Q Consensus 416 ~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~l~~~ 452 (534)
+++.+... ..+...|..+..++...|+.+.+.++.++
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 55543210 01245566666666666666666655443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-17 Score=158.03 Aligned_cols=275 Identities=9% Similarity=-0.005 Sum_probs=137.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...+...|++++|++.++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34555666667777777777777766654 3456667777777777777777777777766543 335566666666666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIV-ID-ALCRCGQITRAH 307 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~-~~~~~g~~~~A~ 307 (534)
..|++++|.+.++++....+.+...+..+.... |+......+ .. .+...|++++|.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 777777777777666554333333333330000 000000001 11 133444444444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 387 (534)
+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444444432 2234444444444444555555555444444432 2234444445555555555555555555544432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 388 CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP-----------NTVTYNILMQMFATSKSTDMVLKLKK 451 (534)
Q Consensus 388 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~l~~ 451 (534)
. .+...+..+..++...|++++|.+.++++.+..... +...|..+..++...|++++|..+++
T Consensus 237 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 237 P-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred C-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1 134444555555555555555555555544322110 24445555555555555555555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-17 Score=155.78 Aligned_cols=280 Identities=11% Similarity=0.010 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..+...+...|++++|+++|+++.+.. +.+..++..+...+...|++++|.+.++++....+.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345566667777777777777777776643 3455666667777777777777777777766655666667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCChhHH
Q 009470 264 RAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMR--VHVKASRTEKV 341 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~a 341 (534)
..|++++|.+.++++.+.... +...+..+... .++......+.. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 777777777777776654221 11111111000 011111112212 37788999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999998875 55788999999999999999999999999998753 36788999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 422 KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP-----------NVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
. +.+..++..+...+...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++.++
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5 3468889999999999999999999999988753111 467899999999999999999999876544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-16 Score=150.39 Aligned_cols=250 Identities=10% Similarity=0.060 Sum_probs=142.0
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPD-VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
....|++..|+..++.+....+.+ ......+.++|...|++++|+..++. .-.|+..++..+...+...|+.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344555555555555543321111 12334455566666666665554432 1234455555555566666666666
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 307 HDVFAEMLEVGCEP-NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 307 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666665554323 344444445556666666666666654 34455666666666666666666666666665
Q ss_pred CCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 386 KGCNPNASTF---NMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV 462 (534)
Q Consensus 386 ~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~ 462 (534)
.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-+.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 53 332111 112233334467777777777776653 3466677777777777777777777777766653 4456
Q ss_pred HHHHHHHHHHHhCCCHHH-HHHHHHHHHHc
Q 009470 463 NTYRILITMYCGMGHWNN-AYKYIREMIEE 491 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~-A~~~~~~~~~~ 491 (534)
.++..++..+...|+.++ +.++++++++.
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 667777777777777655 45677777763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.3e-16 Score=155.22 Aligned_cols=366 Identities=9% Similarity=-0.003 Sum_probs=254.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSR--------NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY-----G 213 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g 213 (534)
....||.+..++...|++++|++.|++..+. ..+....+|+.+...|...|++++|+..+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4568999999999999999999999876542 12335678999999999999999999999887542 1
Q ss_pred -C-CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 214 -C-APDKIAFSIVISILCR--KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW---CRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 214 -~-~~~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
. .....++.....++.. .+++++|++.|++.....|.+...+..+...+ ...++.++|++.+++..+... .+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 0 1234566666555555 45789999999998877677777777766654 456778889999998877542 24
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 009470 287 VYTYSIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF 362 (534)
Q Consensus 287 ~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 362 (534)
...+..+...+.. .|++++|.+.+++..... +.+...+..+...|.+.|++++|...+++..+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 5566655555544 467889999999988775 4577888999999999999999999999998874 445667777
Q ss_pred HHHHHHHc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 009470 363 LIDCHCKD-------------------GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC 423 (534)
Q Consensus 363 li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 423 (534)
+..+|... +.+++|...+++..+... .+...+..+...+...|++++|.+.|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 76665432 235677788887777643 3556788889999999999999999999987653
Q ss_pred CCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHH
Q 009470 424 EPNTV--TYNILMQ-MFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSV 500 (534)
Q Consensus 424 ~p~~~--~~~~li~-~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 500 (534)
.+... .+..+.. .+...|+.++|+..+++..+. .|+...... ..+.+.+++++.++.. +.+..+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~--p~~~~~ 432 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN--GADSEA 432 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC--C-CTTH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC--CCCHHH
Confidence 32221 2223322 234678999999999998874 444332222 2344556667777754 456778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 501 YEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 501 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
|..+..++...|++++|.+.+++.++.|-
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-16 Score=147.80 Aligned_cols=83 Identities=17% Similarity=0.160 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHH
Q 009470 371 GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM-VLKL 449 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~l 449 (534)
|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.++++.+.. +-+..++..++..+...|+.++ +.++
T Consensus 180 ~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp THHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44444444444444432 2233444444444444444444444444443332 1133344444444444444432 2344
Q ss_pred HHHHHH
Q 009470 450 KKEMEE 455 (534)
Q Consensus 450 ~~~m~~ 455 (534)
++++.+
T Consensus 258 ~~~~~~ 263 (291)
T 3mkr_A 258 LSQLKD 263 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=158.71 Aligned_cols=278 Identities=12% Similarity=0.110 Sum_probs=134.5
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 127 PLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF 206 (534)
Q Consensus 127 ~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 206 (534)
.+++|..|++.+. .+.+|..++.++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+..+
T Consensus 18 ~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 18 NLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4678899988762 3469999999999999999999999753 45679999999999999999999988
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 207 NRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 207 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
+..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 777663 4567889999999999999999988875 367789999999999999999999999977
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 287 VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 287 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
..|..++.++.+.|++++|++.+.++ .++.+|..++.+|+..|+++.|...... +...+.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence 37899999999999999999999988 2789999999999999999999665543 23344446678999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL--GDVNGAHRMYGKMKDLKCEP------NTVTYNILMQMFA 438 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~~~ 438 (534)
|.+.|++++|..+++...... +.....|+.+..+|++- +++.+.+++|..- .++++ +...|.-+.-.|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998775 55678888887777764 3444455544321 12222 4556888899999
Q ss_pred hcCCHHHHHH
Q 009470 439 TSKSTDMVLK 448 (534)
Q Consensus 439 ~~g~~~~a~~ 448 (534)
..++++.|..
T Consensus 294 ~~~e~d~A~~ 303 (449)
T 1b89_A 294 KYEEYDNAII 303 (449)
T ss_dssp HTTCHHHHHH
T ss_pred hhchHHHHHH
Confidence 9999998876
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=180.55 Aligned_cols=115 Identities=10% Similarity=0.126 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKM---AGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNL 328 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 328 (534)
..+||+||.+||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 245555555555555555555555555555555555555555555555
Q ss_pred HHHHHHcCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 329 MRVHVKASRT-EKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 329 i~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 5555555542 4455555555555555555555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=163.14 Aligned_cols=284 Identities=13% Similarity=0.160 Sum_probs=136.2
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 159 GKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQ 238 (534)
Q Consensus 159 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 238 (534)
-+.|++++|.++++++.. ..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 477889999999999833 259999999999999999999999653 57779999999999999999999
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 239 SFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC 318 (534)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 318 (534)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 988877664 4567889999999999999999998885 367789999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 319 EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMI 398 (534)
Q Consensus 319 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 398 (534)
..|..++.++.+.|++++|.+.+.++ .+..+|..++.+|+..|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36899999999999999999999988 378999999999999999999966555422 344445678
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC------CHHHHHHHHHH
Q 009470 399 FRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEE-NEVEP------NVNTYRILITM 471 (534)
Q Consensus 399 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~p------~~~~~~~li~~ 471 (534)
+..|.+.|.+++|..+++...... +-....|+-|..+|++- +.++..+.++.... .++++ +...|.-++..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998765 55778888888888875 33333333332222 12222 45568889999
Q ss_pred HHhCCCHHHHHHH
Q 009470 472 YCGMGHWNNAYKY 484 (534)
Q Consensus 472 ~~~~g~~~~A~~~ 484 (534)
|.+.++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999998763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-14 Score=148.51 Aligned_cols=374 Identities=11% Similarity=0.075 Sum_probs=278.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
+.+...|..++.. .+.|+++.|..+|+++.+.. |.+...|...+..+.+.|++++|.++|+++.+.. |+...|...
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 4578899999984 78899999999999999875 6688999999999999999999999999998753 687777777
Q ss_pred HHHH-HhcCCHHHHHH----HHHHhhcc---CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCH
Q 009470 225 ISIL-CRKRRASEAQS----FFDSLKDK---FEPDVIVYTNLVRGWCR---------AGNISEAERVFREMKMAGIQPNV 287 (534)
Q Consensus 225 l~~~-~~~g~~~~A~~----~~~~~~~~---~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~ 287 (534)
+... ...|+.+.|.+ +|++.... .+.+...|...+....+ .|++++|.++|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34677776665 66665432 23467888888887665 78999999999999873111112
Q ss_pred HHHHHHHHHHH-------------HcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHHc--
Q 009470 288 YTYSIVIDALC-------------RCGQITRAHDVFAEML------EVG---CEPN--------SITFNNLMRVHVKA-- 335 (534)
Q Consensus 288 ~~~~~ll~~~~-------------~~g~~~~A~~~~~~m~------~~~---~~~~--------~~~~~~li~~~~~~-- 335 (534)
..|........ +.+++++|..++.++. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 34443333211 2345677777776532 111 2333 24555555433322
Q ss_pred --CCh----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHH-------cCChH-------HHHHHHHHHHHCCCCCCHHHH
Q 009470 336 --SRT----EKVLQVYNQMKRLGCEADTITYNFLIDCHCK-------DGKLE-------DAIKVLNSMVRKGCNPNASTF 395 (534)
Q Consensus 336 --g~~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~~~~~~~ 395 (534)
++. +++..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+-+...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 37788999888763 5578888888888876 79987 999999999873223368889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLKCEPN-T-VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM-Y 472 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~-~ 472 (534)
..++..+.+.|++++|..+|+++.+.. |+ . ..|..++..+.+.|++++|.+++++..+.. +.+...|...+.. +
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHH
Confidence 999999999999999999999999853 43 3 589999999999999999999999998863 2233334333322 3
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 473 CGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
...|++++|.++|+++++.. +.+...|..++..+.+.|+.++|..+++++++.+
T Consensus 402 ~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 46899999999999999864 3467889999999999999999999999999874
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-14 Score=150.10 Aligned_cols=290 Identities=12% Similarity=0.155 Sum_probs=166.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (534)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.+++. +..+|..+..++.+.|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCH
Confidence 3455677788888888887752 11222222222 5666777777777653 466777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
++|.+.|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++.+++++.....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---
Confidence 7777777553 256666677777777777777777776655543 22222233666666666666433221
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------
Q 009470 349 KRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL------- 421 (534)
Q Consensus 349 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------- 421 (534)
+ .++...|..+...|...|++++|..+|..+ ..|..+..++++.|++++|.+.+++....
T Consensus 1191 -~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~ 1257 (1630)
T 1xi4_A 1191 -N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 1257 (1630)
T ss_pred -h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence 1 234455555666666666666666666663 25666666666666666666666554210
Q ss_pred -----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--CCHHHHH
Q 009470 422 -----------------KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGM--GHWNNAY 482 (534)
Q Consensus 422 -----------------~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~ 482 (534)
++..+...+..++..|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.
T Consensus 1258 ~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 011233444555666666666666666665555432 22333444444444432 3333444
Q ss_pred HHHHHHHHcCCCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 009470 483 KYIREMIEEKCLKP------GSSVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 483 ~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 519 (534)
++|..-+. +++ +...|..++..|.+.|+++.|..
T Consensus 1337 k~f~~rin---i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1337 ELFWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcc---cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44432222 222 34557777777788888887774
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-14 Score=149.45 Aligned_cols=338 Identities=11% Similarity=0.134 Sum_probs=259.3
Q ss_pred HHHHHHHHhC-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 132 LSFFNWVTAR-PEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNV--EITVDTFSILVRRYVRAGLAAEAVHAFNR 208 (534)
Q Consensus 132 l~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (534)
..+.+|+... -.-..+|+-....+..|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +..+..++.++
T Consensus 968 R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k 1046 (1630)
T 1xi4_A 968 RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH
Confidence 3566775541 12356788889999999999999999999999984432 13456677788888777 66777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 009470 209 MEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVY 288 (534)
Q Consensus 209 m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 288 (534)
+... + ...+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..
T Consensus 1047 Ld~~----d---~~eIA~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aervn------~p~ 1106 (1630)
T 1xi4_A 1047 LDNY----D---APDIANIAISNELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPA 1106 (1630)
T ss_pred hhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHH
Confidence 6532 1 33467788899999999999999642 2233333333 7789999999988663 577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHC 368 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 368 (534)
+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 8999999999999999999999664 377889999999999999999999999887764 44444456999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 369 KDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLK 448 (534)
Q Consensus 369 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 448 (534)
+.+++++....+ + .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+
T Consensus 1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 999988644443 2 346677888999999999999999999985 379999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 449 LKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 449 l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
.+++. .+..+|..+..+|...|++..|....... ..+...+..++..|.+.|.+++|..+++..+.
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99876 25577777777777788877777755432 23455566777777888888888887776643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-18 Score=177.27 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLE---VGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF 362 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 362 (534)
-..||+++|++||+.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 457899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 009470 363 LIDCHCKDGKL-EDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN------TVTYNILMQ 435 (534)
Q Consensus 363 li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~ 435 (534)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++..+++ .-+..|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998766543 444444444 2333443 334445555
Q ss_pred HHHhcC
Q 009470 436 MFATSK 441 (534)
Q Consensus 436 ~~~~~g 441 (534)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.7e-15 Score=148.89 Aligned_cols=361 Identities=10% Similarity=-0.022 Sum_probs=244.1
Q ss_pred CCChHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-----C--CCCCHHHHHHHH
Q 009470 125 GIPLLQVLSFFNWVTAR-------PEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSR-----N--VEITVDTFSILV 190 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~~~~~~~~~li 190 (534)
.++.++|+..|+.+.+. ...+....+|+.+..+|...|++++|...+++..+. + ......++..+.
T Consensus 64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g 143 (472)
T 4g1t_A 64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG 143 (472)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence 45788999999887541 112334568999999999999999999999877542 1 112456777777
Q ss_pred HHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 191 RRYVRA--GLAAEAVHAFNRMEEYGCAPDKIAFSIVISI---LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 191 ~~~~~~--g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
.++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++.....+.+..++..+...+...
T Consensus 144 ~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~ 222 (472)
T 4g1t_A 144 WTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222 (472)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 666654 46999999999998764 3345555554444 44567888899999988776777888888777666554
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc------
Q 009470 266 ----GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA------ 335 (534)
Q Consensus 266 ----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 335 (534)
|++++|.+.+++...... .+...+..+...|...|++++|.+.+++..+.. +-+..++..+..+|...
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~ 300 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMN 300 (472)
T ss_dssp C------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhh
Confidence 678899999999887643 367788899999999999999999999998875 33566676666555332
Q ss_pred -------------CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH
Q 009470 336 -------------SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS--TFNMIFR 400 (534)
Q Consensus 336 -------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~ 400 (534)
+..+.|...+++..+.. +.+...+..+...|...|++++|...|++..+....+... .+..+..
T Consensus 301 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 301 LRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGN 379 (472)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 23567888888877765 5567788899999999999999999999999875433221 2233332
Q ss_pred -HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 009470 401 -CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWN 479 (534)
Q Consensus 401 -~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 479 (534)
.....|+.++|+..|++..+.. |+..... +..+.+.++++...+.. +.+..+|..+...|...|+++
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~ 447 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQ 447 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2457899999999999998764 4433222 22234455566655543 567789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHH
Q 009470 480 NAYKYIREMIEEKCLKPGSSVY 501 (534)
Q Consensus 480 ~A~~~~~~~~~~~~~~p~~~~~ 501 (534)
+|++.|+++++.+...|+...|
T Consensus 448 ~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 448 QADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999977555655443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-15 Score=135.38 Aligned_cols=223 Identities=12% Similarity=0.070 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---C----HHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEP---D----VIVYT 256 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~----~~~~~ 256 (534)
..|..+...+...|++++|++.|++..+.. .+..++..+...+...|++++|.+.+++.....+. + ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445555666666666666666666665544 45555666666666666666666666654432111 1 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
.+...+.+.|++++|...|+++.+.. |+. ..+.+.|++++|.+.++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 66666666666666666666666532 231 23445556666666666665542 223445555555566666
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYG 416 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 416 (534)
++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .+...+..+..++.+.|++++|.+.++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666655543 33455555555556666666666666665555431 234555555555555555555555555
Q ss_pred HHHh
Q 009470 417 KMKD 420 (534)
Q Consensus 417 ~m~~ 420 (534)
+..+
T Consensus 232 ~a~~ 235 (258)
T 3uq3_A 232 AART 235 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=134.02 Aligned_cols=226 Identities=14% Similarity=0.057 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCE--PN----SITF 325 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~----~~~~ 325 (534)
...|..+...+...|++++|...|+++.+.. .+...+..+...+...|++++|++.+++..+.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776655 46666777777777777777777777776654211 11 4566
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009470 326 NNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 405 (534)
..+...+...|++++|...++++.+.. ++. ..+...|++++|...++++..... .+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHh
Confidence 677777777777777777777776643 332 345566777777777777776532 2455677777777788
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 009470 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYI 485 (534)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 485 (534)
|++++|.+.++++.+.. +.+..+|..+...+...|++++|...++++.+.. +.+...|..+...+.+.|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888888888777654 2356777777888888888888888888877753 445677777888888888888888888
Q ss_pred HHHHHc
Q 009470 486 REMIEE 491 (534)
Q Consensus 486 ~~~~~~ 491 (534)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=129.94 Aligned_cols=80 Identities=14% Similarity=-0.008 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
.+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++.....|.+...+..+...+.+
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33334444444444444444444443322 22233333344444444444444444444333333333444444444433
Q ss_pred c
Q 009470 265 A 265 (534)
Q Consensus 265 ~ 265 (534)
.
T Consensus 86 ~ 86 (217)
T 2pl2_A 86 L 86 (217)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=129.96 Aligned_cols=200 Identities=10% Similarity=0.017 Sum_probs=148.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 224 (534)
+.++..+..+...+.+.|++++|...|++..+.+ +.+...|..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3466788899999999999999999999999886 5688999999999999999999999999998865 4567788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 225 ISILCRK-----------RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIV 293 (534)
Q Consensus 225 l~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 293 (534)
...+... |++++|+..|++..+..|.+...|..+...+...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 8888888 888888888877776666677777777778888888888888887777765 466777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 294 IDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
...|...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777777777664 3356666777777777777777777776554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=8.2e-13 Score=123.07 Aligned_cols=224 Identities=14% Similarity=0.052 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFN 326 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 326 (534)
+..++..+...+...|++++|++.|++..+. -+...+..+...|.. .|++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566666777777777777777777777663 244566666677777 777777777777777664 566666
Q ss_pred HHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 327 NLMRVHVK----ASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMI 398 (534)
Q Consensus 327 ~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 398 (534)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 777777777777777654 56667777777777 777777777777777764 45566666
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 399 FRCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 399 ~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
...+.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 677766 777888888887777653 45666777777777 778888888888777764 2566667777
Q ss_pred HHHh----CCCHHHHHHHHHHHHHcC
Q 009470 471 MYCG----MGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 471 ~~~~----~g~~~~A~~~~~~~~~~~ 492 (534)
.|.+ .+++++|++++++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7777 778888888888877754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-14 Score=143.43 Aligned_cols=368 Identities=11% Similarity=0.029 Sum_probs=226.0
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----
Q 009470 125 GIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQF---DLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG---- 197 (534)
Q Consensus 125 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---- 197 (534)
.+++.+|+..|..+.+. + ++..+..+..++...|+. ++|..+|++..+. +...+..+...+...|
T Consensus 16 ~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHH-T---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 34577888888887754 2 344566666777777777 8888888877654 3456666666555554
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH--
Q 009470 198 -LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASE---AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA-- 271 (534)
Q Consensus 198 -~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-- 271 (534)
++++|+++|++..+.|. + ..+..+...|...+..++ +.+.+...... .+...+..|...|...+.++++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHHHHHHHHHHHTCGGGGHH
T ss_pred cCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcccCHH
Confidence 67888888888887663 2 255666666666554443 33334333321 2455677777778777754444
Q ss_pred --HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CChhHHH
Q 009470 272 --ERVFREMKMAGIQPNVYTYSIVIDALCRCG---QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA----SRTEKVL 342 (534)
Q Consensus 272 --~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~ 342 (534)
..+++.... .+...+..+...|.+.| +.++|++.|++..+.| .++...+..+...|... ++.++|.
T Consensus 163 ~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 163 DVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp HHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444443332 23337777888888888 8888999998888887 55666556666666554 6888899
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhHHHHH
Q 009470 343 QVYNQMKRLGCEADTITYNFLIDC-H--CKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG-----DVNGAHRM 414 (534)
Q Consensus 343 ~~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~ 414 (534)
++|++.. . -+...+..|... + ...+++++|.+.|++..+.| +...+..+...|. .| ++++|.++
T Consensus 238 ~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 238 ALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 9888887 3 355666666666 3 46788999999999888876 6677777777776 45 88889998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 009470 415 YGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIR 486 (534)
Q Consensus 415 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~ 486 (534)
|++.. .| +...+..|...|.. ..++++|..++++..+.|. ......|...|.. ..++++|..+|+
T Consensus 310 ~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 310 FEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 88877 33 66777777777766 3488889999988888763 3344455555553 458889999998
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 487 EMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 487 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
...+.| .++.......+......++.++|.++.++..+.
T Consensus 383 ~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 383 LAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 888865 233322222222223345667777777766553
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.3e-13 Score=123.05 Aligned_cols=225 Identities=12% Similarity=0.026 Sum_probs=200.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK----ASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
+...+..+...|...|++++|++.|++..+.+ +...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56678888899999999999999999999843 56788889999999 999999999999999876 788899
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009470 362 FLIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNIL 433 (534)
Q Consensus 362 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 433 (534)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 99999999 999999999999999875 77889999999999 999999999999999875 67788888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 434 MQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 434 i~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++++++..+.+ + ...+..+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~-~~a~~~l~ 225 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---N-GGGCFNLG 225 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---C-HHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---C-HHHHHHHH
Confidence 888888 899999999999999875 56788888889999 999999999999999864 3 66788888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCC
Q 009470 506 QQLRR----AGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 506 ~~~~~----~g~~~~a~~~~~~~~~~g~ 529 (534)
..|.. .|+.++|.+.+++..+.|.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 89988 9999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-13 Score=128.77 Aligned_cols=237 Identities=11% Similarity=0.057 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD--KIAFSIVI 225 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~ll 225 (534)
++.+......+.+.|++++|...|+++.+.. +.+...+..+...|...|++++|++.+++..+.+-.++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455566677778888888888888877764 33455777778888888888888888888776331121 23467777
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
..+...|++++|++.|++.....+.+..+|..+...+...|++++|.+.+++..+.. +.+...+..+...+...+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888776666677778888888888888888888887776652 2245556555524444557888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHHHcCChHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASR---TEKVLQVYNQMKRLG-CEAD------TITYNFLIDCHCKDGKLED 375 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~g-~~~~------~~~~~~li~~~~~~g~~~~ 375 (534)
|.+.++++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.++ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 888887777664 3345666666777777776 666777777665431 1122 1355556666666667777
Q ss_pred HHHHHHHHHHCC
Q 009470 376 AIKVLNSMVRKG 387 (534)
Q Consensus 376 A~~~~~~m~~~~ 387 (534)
|.+.++++.+..
T Consensus 240 A~~~~~~al~~~ 251 (272)
T 3u4t_A 240 ADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 766666666653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-13 Score=124.75 Aligned_cols=200 Identities=13% Similarity=0.018 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI 227 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 227 (534)
+..+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|++.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4466777777788888888888888877764 4467778888888888888888888888877653 3456677777777
Q ss_pred HHhcCCHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 228 LCRKRRASEAQSFFDSLKD--KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 305 (534)
+...|++++|.+.++++.. ..+.+...+..++..+.+.|++++|.+.++++.+... .+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 7777777777777777665 4444566777777777777777777777777766432 245666667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
|...++++.+.. +.+...+..+...+.+.|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777777766553 345556666666667777777777777766655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-13 Score=125.67 Aligned_cols=201 Identities=12% Similarity=0.045 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|.+.++++....+.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4567778888888888888888888887654 446677788888888888888888888887766666777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009470 263 CRAGNISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKV 341 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (534)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877632233 35566677777777888888888887777664 33566677777777777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777776543 345556666666777777777777777777665
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=132.87 Aligned_cols=246 Identities=11% Similarity=0.037 Sum_probs=141.6
Q ss_pred cCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009470 265 AGNISEAERVFREMKMAGIQ---PNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKV 341 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (534)
.|++++|+..++++.+.... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666666554211 124455556666666666666666666666553 23455666666666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
...++++.+.. +.+...+..+..+|...|++++|...++++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 66666666543 3345666666666666666777766666666653 33333333334445556777777777665543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH
Q 009470 422 KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE---PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 498 (534)
. +++...+. ++..+...++.++|...++++.+.... .+...+..+...|.+.|++++|...++++++. .|+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~ 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---NVHN 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCTT
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---Cchh
Confidence 2 22333332 555556666667777777666443110 01456677777888888888888888888774 3432
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 009470 499 SVYEMVLQQLRRAGQLQKHEELV 521 (534)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~a~~~~ 521 (534)
+.....++...|++++|.+.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 223345566677777776655
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-13 Score=132.07 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR-ASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
+...|..+...+.+.|++++|++.+++..+.. +-+..+|+.+..++...|+ +++|+..|+++....+.+..+|+.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 35677777777778888888888888877654 3446667777777777775 777777777776666667777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChh
Q 009470 261 GWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK-ASRTE 339 (534)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~ 339 (534)
.+.+.|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.. +-+...|+.+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 777777777777777777665332 55666666666667777777777777766664 3356666666666666 44435
Q ss_pred HH-----HHHHHHHHHcCCCCChhhHHHHHHHHHHcC--ChHHHHHHHHHH
Q 009470 340 KV-----LQVYNQMKRLGCEADTITYNFLIDCHCKDG--KLEDAIKVLNSM 383 (534)
Q Consensus 340 ~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 383 (534)
+| +..+++..+.. +-+...|..+...+...| ++++|.+.+.++
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 55 24455544432 233444444444444444 344444444444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=128.85 Aligned_cols=233 Identities=12% Similarity=0.087 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 009470 255 YTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP--NSITFNNLMRVH 332 (534)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~ 332 (534)
+......+...|++++|+..|+++.+.... +...+..+...|...|++++|++.+++..+.+..+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334444555555555555555555543211 23344445555555555555555555555422111 122345555555
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009470 333 VKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAH 412 (534)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 412 (534)
...|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555443 3344555566666666666666666666655542 224444555552333334666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhCCCHHHHH
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENE-VEPN------VNTYRILITMYCGMGHWNNAY 482 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~ 482 (534)
+.++++.+.. +.+...+..+...+...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666665543 2234555555666665565 556666666655421 0122 245666777777777777777
Q ss_pred HHHHHHHHc
Q 009470 483 KYIREMIEE 491 (534)
Q Consensus 483 ~~~~~~~~~ 491 (534)
+.++++++.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777774
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-14 Score=127.80 Aligned_cols=202 Identities=11% Similarity=0.021 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
.+..|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45567777777788888888888888887764 4567788888888888888888888888877653 345677777777
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
.+...|++++|.+.++++....+.+...+..++..+.+.|++++|.+.++++.+... .+...+..+...+.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 777888888888888877766666777777777777777888888877777766432 2556666777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
.+.++++.+.. +.+..++..+..++.+.|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 77777776654 3356666667777777777777777777766653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-13 Score=132.77 Aligned_cols=234 Identities=11% Similarity=0.060 Sum_probs=196.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL-AAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
....|+.+..++.+.|++++|+..++++.+.+ +-+..+|+.+...+...|+ +++|++.|++..+.. +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45688889999999999999999999999886 5678899999999999997 999999999998865 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR-CGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~ 304 (534)
.++...|++++|+..|+++....+.+..+|..+..++.+.|++++|+..++++++.... +...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999998888889999999999999999999999999999987543 67889999999998 66657
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC------
Q 009470 305 RA-----HDVFAEMLEVGCEPNSITFNNLMRVHVKAS--RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDG------ 371 (534)
Q Consensus 305 ~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g------ 371 (534)
+| ++.+++.++.. +-+...|+.+..++.+.| ++++|++.+.++ +. .+.+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 58888888775 446788888888888888 689999999887 33 2556777888888887764
Q ss_pred ---ChHHHHHHHHHH-HHC
Q 009470 372 ---KLEDAIKVLNSM-VRK 386 (534)
Q Consensus 372 ---~~~~A~~~~~~m-~~~ 386 (534)
..++|.++++++ .+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 247777777777 544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=134.86 Aligned_cols=220 Identities=13% Similarity=0.037 Sum_probs=106.6
Q ss_pred cCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 161 VRQFDLAWHFIDLMKSRNV---EITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEA 237 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A 237 (534)
.|++++|...++++.+... +.+..+|..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3555666666665555421 1134455556666666666666666666655543 23455555555555556666666
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 238 QSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
.+.|++.....+.+..++..+...+.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 666655555444455555555555556666666666655555432 222222233333344455555555554444432
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 318 CEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE---ADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 318 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
+++...+. ++..+...++.++|...+++..+.... .+...+..+..+|.+.|++++|...++++.+
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12222222 333444444445555555444332100 0123344444444444444444444444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-13 Score=121.08 Aligned_cols=200 Identities=13% Similarity=0.045 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++.....+.+..++..++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3444555555555555555555555554432 223444555555555555555555555555444444555555555555
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 009470 263 CRA-GNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK 340 (534)
Q Consensus 263 ~~~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (534)
... |++++|...++++.+.+..|+ ...+..+...+...|++++|++.++++.+.. +.+...+..+...+.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 555555555555554211121 3444555555555555555555555555442 2234445555555555555555
Q ss_pred HHHHHHHHHHcCCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 341 VLQVYNQMKRLGCE-ADTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 341 a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555554432 2 3344444444444555555555555555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-14 Score=127.00 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=113.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
....|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++....+.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34556666667777777777777777776543 34566666666777777777777777777665555566667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKV 341 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 341 (534)
+...|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+.+.|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776665432 245556666666666666666666666666553 23455556666666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
...++++.+.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 66666665543 334555555555666666666666666655554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-13 Score=120.30 Aligned_cols=203 Identities=11% Similarity=0.042 Sum_probs=177.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVI 225 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll 225 (534)
.++..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 356788899999999999999999999998875 4568899999999999999999999999998764 45778899999
Q ss_pred HHHHhc-CCHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 009470 226 SILCRK-RRASEAQSFFDSLKD--KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ 302 (534)
Q Consensus 226 ~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 302 (534)
..+... |++++|.+.++++.. ..+.+...+..+...+...|++++|...++++.+... .+...+..+...+.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCC
Confidence 999999 999999999999887 4455578899999999999999999999999987642 257888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 303 ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
+++|.+.++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999988753157778888888899999999999999998765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-14 Score=140.01 Aligned_cols=348 Identities=11% Similarity=0.026 Sum_probs=224.4
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLA---AEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+...+.+.|++++|.++|++..+.|. ...+..+...|...|+. ++|+++|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677788999999999988877763 24566677777777887 8899998888753 4455555655454
Q ss_pred hcC-----CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 009470 230 RKR-----RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS---EAERVFREMKMAGIQPNVYTYSIVIDALCRCG 301 (534)
Q Consensus 230 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 301 (534)
..+ +.++|...|++......+ ..+..|...|...++.+ ++.+.+....+.| +...+..+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 444 778899998887654333 36777777777665533 3455555555444 3445666777788777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc----CChH
Q 009470 302 QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS---RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD----GKLE 374 (534)
Q Consensus 302 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~ 374 (534)
.++++......+.+.-...+...+..+...|.+.| +.++|++.|++..+.| .++...+..|...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 66555554333332211223337778888888888 8889999999988887 56666666777777554 6889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 009470 375 DAIKVLNSMVRKGCNPNASTFNMIFRC-I--SKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK-----STDMV 446 (534)
Q Consensus 375 ~A~~~~~~m~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a 446 (534)
+|...|++.. .| +...+..+... + ...++.++|.++|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999887 43 55666666665 4 46889999999999988866 6677777777776 45 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR----AGQLQKHE 518 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 518 (534)
.+++++.. .| +...+..+...|.. ..++++|.++|++..+.+ .++ ....|...|.. ..+.++|.
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~--A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNS--ADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTT--HHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHH--HHHHHHHHHHhCCCCCCCHHHHH
Confidence 99998877 43 56667777766665 348999999999988865 233 35556666553 45888999
Q ss_pred HHHHHHHHcCC
Q 009470 519 ELVEKMVDRGF 529 (534)
Q Consensus 519 ~~~~~~~~~g~ 529 (534)
.++++..+.|.
T Consensus 379 ~~~~~A~~~g~ 389 (452)
T 3e4b_A 379 VFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHCCC
Confidence 99988888774
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-14 Score=137.56 Aligned_cols=272 Identities=14% Similarity=0.140 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDV----IVYTNLVRGWCRAGNISEAERVFREMKMA----GI-QPNVYT 289 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~~ 289 (534)
..+..+...+...|++++|+..|+++....+.+. .+|..+...|...|++++|...+++..+. +. ......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556667777888888888887766544444 46777777778888888888887776542 11 112455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCC-----------------hhHHHHHHHH
Q 009470 290 YSIVIDALCRCGQITRAHDVFAEMLEV----G-CEPNSITFNNLMRVHVKASR-----------------TEKVLQVYNQ 347 (534)
Q Consensus 290 ~~~ll~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~ 347 (534)
+..+...|...|++++|.+.+++..+. + ......++..+...|...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 666777777777888777777776543 1 01123456666667777777 6666666665
Q ss_pred HHHc----CC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 009470 348 MKRL----GC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-PN----ASTFNMIFRCISKLGDVNGAHRMYGK 417 (534)
Q Consensus 348 ~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (534)
..+. +. .....++..+...|...|++++|...+++..+.... .+ ...+..+...+...|++++|.+.+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5432 11 111235555666666666666666666665543110 01 12455555566666666666666665
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 009470 418 MKDLKCE-PN----TVTYNILMQMFATSKSTDMVLKLKKEMEENEV-EPN----VNTYRILITMYCGMGHWNNAYKYIRE 487 (534)
Q Consensus 418 m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 487 (534)
..+.... .+ ..++..+...|...|++++|...+++..+..- ..+ ..++..+...|...|++++|.+++++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5543110 01 23445555555666666666666655543200 001 22445555555566666666666666
Q ss_pred HHH
Q 009470 488 MIE 490 (534)
Q Consensus 488 ~~~ 490 (534)
+++
T Consensus 369 al~ 371 (411)
T 4a1s_A 369 HLQ 371 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=134.89 Aligned_cols=278 Identities=14% Similarity=0.114 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---C---CC
Q 009470 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD----KIAFSIVISILCRKRRASEAQSFFDSLKDK---F---EP 250 (534)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~---~~ 250 (534)
.....+......+...|++++|+..|++..+.+ +.+ ..++..+...+...|++++|...+++.... . +.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 455667777778888888888888888887653 223 245666777777778888888877765321 1 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ-PN----VYTYSIVIDALCRCGQ--------------------ITR 305 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~--------------------~~~ 305 (534)
...++..+...+...|++++|...+++..+.... .+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2445666777777777777777777776553100 11 2345555566666666 555
Q ss_pred HHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCChHHHHHH
Q 009470 306 AHDVFAEMLEV----GCE-PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC-EADTITYNFLIDCHCKDGKLEDAIKV 379 (534)
Q Consensus 306 A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (534)
|.+.+++..+. +.. ....++..+...+...|++++|...+++..+..- .++..
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------- 224 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------- 224 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH---------------------
Confidence 55555544321 100 0122344444444455555555555444432210 00000
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCE-PN----TVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
....++..+...+...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 225 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 225 ----------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp ----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 00123444445555555555555555544321000 01 2344455555555566666655555544
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 455 ENEV-EPN----VNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 455 ~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+..- ..+ ..++..+...|...|++++|.++++++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3100 001 33455555566666666666666665544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=135.86 Aligned_cols=276 Identities=12% Similarity=0.008 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITV----DTFSILVRRYVRAGLAAEAVHAFNRMEEY----GC-APDKI 219 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~ 219 (534)
..+..+...+...|++++|...|+++.+.+. .+. ..|..+...|...|++++|++.+++..+. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3455566677778888888888887777642 232 46777777777788888888877776542 11 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDK------FEPDVIVYTNLVRGWCRAGN-----------------ISEAERVFR 276 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~ 276 (534)
++..+...+...|++++|.+.+++.... .+....++..+...|...|+ +++|++.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 4555555566666666666666554321 11123344445555555555 444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-
Q 009470 277 EMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC-EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE- 354 (534)
Q Consensus 277 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~- 354 (534)
+..+.. ...+. ......+..+...+...|++++|...+++..+..-.
T Consensus 208 ~al~~~-------------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 208 ENLKLM-------------------------------RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 432210 00010 011234444555555566666666555554432100
Q ss_pred CC----hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--
Q 009470 355 AD----TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCN-----PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC-- 423 (534)
Q Consensus 355 ~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-- 423 (534)
.+ ...+..+...|...|++++|...+++..+.... ....++..+...+...|++++|.+.+++..+...
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01 125556666666777777777766665543110 1135566677777777777777777776654210
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 424 ---EPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN 456 (534)
Q Consensus 424 ---~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 456 (534)
.....++..+...|...|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 011346667777888888888888888877653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-13 Score=134.08 Aligned_cols=239 Identities=14% Similarity=-0.002 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC
Q 009470 145 VHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT----VDTFSILVRRYVRAGLAAEAVHAFNRMEEY----GCAP 216 (534)
Q Consensus 145 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~ 216 (534)
......+......+.+.|++++|...|+++.+.+. .+ ..+|..+...|...|++++|++.+++..+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34566778888999999999999999999988753 33 367889999999999999999999987542 2112
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CC----HHHHHHHHHHHHhcCC--------------------HH
Q 009470 217 -DKIAFSIVISILCRKRRASEAQSFFDSLKDKFE--PD----VIVYTNLVRGWCRAGN--------------------IS 269 (534)
Q Consensus 217 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~--------------------~~ 269 (534)
...++..+...+...|++++|...+++.....+ .+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245677888899999999999999998654211 12 4588899999999999 99
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChh
Q 009470 270 EAERVFREMKMA----GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC-EPN----SITFNNLMRVHVKASRTE 339 (534)
Q Consensus 270 ~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~ 339 (534)
+|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887542 2111 245678888999999999999999998875411 112 225666667777777777
Q ss_pred HHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 340 KVLQVYNQMKRLGCE-AD----TITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 340 ~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
+|...+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 777777766542100 01 2344444555555555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-13 Score=128.75 Aligned_cols=135 Identities=10% Similarity=-0.002 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKC-EPN----TVTYNILMQMFATSKSTDMVLKLKKEMEENEV-EPN----V 462 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~p~----~ 462 (534)
..+..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|++++|...+++..+... ..+ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3455666666677777777777766543210 011 23566677777777888888877777654210 011 4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 463 NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG----SSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 463 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
.++..+...+...|++++|.++++++++...-..+ ..++..+...+.+.|++++|.+.++++++.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 56677777888888888888888877663210111 335667778888888888888888888764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-13 Score=128.42 Aligned_cols=274 Identities=14% Similarity=0.103 Sum_probs=130.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc------CCCCHHHH
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD----KIAFSIVISILCRKRRASEAQSFFDSLKDK------FEPDVIVY 255 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 255 (534)
+......+...|++++|+..|+++.+.+ +.+ ...+..+...+...|++++|.+.+++.... .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344445555566666666666555432 112 234445555555555555555555543221 11123455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 009470 256 TNLVRGWCRAGNISEAERVFREMKMAGI-QPN----VYTYSIVIDALCRCGQ--------------------ITRAHDVF 310 (534)
Q Consensus 256 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~A~~~~ 310 (534)
..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666665543210 011 2245555555566666 55555555
Q ss_pred HHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 311 AEMLEV----GCE-PNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 311 ~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
++.... +.. .....+..+...+...|++++|...+++..+... ..+.
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------- 219 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------- 219 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 444321 100 0122334444444445555555544444332100 0000
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 009470 385 RKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC-EPN----TVTYNILMQMFATSKSTDMVLKLKKEMEEN--- 456 (534)
Q Consensus 385 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--- 456 (534)
.....++..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|++++|...+++..+.
T Consensus 220 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 220 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 00112344444455555555555555554432100 001 334555566666666666666666655432
Q ss_pred -CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 457 -EV-EPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 457 -~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+- .....++..+...|.+.|++++|.++++++++.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 10 011335566667777777777777777777663
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-12 Score=125.09 Aligned_cols=230 Identities=10% Similarity=0.037 Sum_probs=122.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C----CCCHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKMA----GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVG--C----EPNSITFN 326 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~----~~~~~~~~ 326 (534)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++..+.. . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566777777777777777543 1111 23456666777777777777777777665431 0 01134556
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKRLGCE-A----DTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GC-NPNASTFN 396 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~~ 396 (534)
.+...|...|++++|...+++..+..-. . ...++..+..+|...|++++|...+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666677777777777776665532100 1 1135556666666666666666666666551 11 22344556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 009470 397 MIFRCISKLGDVNGAHRMYGKMKDLK----CEPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENEVEP-NVNTYRIL 468 (534)
Q Consensus 397 ~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p-~~~~~~~l 468 (534)
.+...+.+.|++++|.+.+++..+.. .......+..+...+...|+ +++|..++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 66666666666666666666554321 01111223444445555555 44444444433 1111 12344455
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 009470 469 ITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~~~~~~ 490 (534)
...|...|++++|.++++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 5555566666666666555544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.2e-11 Score=112.99 Aligned_cols=236 Identities=8% Similarity=0.053 Sum_probs=155.3
Q ss_pred HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHH
Q 009470 252 VIVYTNLVRGWCRA----GNI----SEAERVFREMKMAGIQPNVYTYSIVIDALCR-------CGQI-------TRAHDV 309 (534)
Q Consensus 252 ~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~g~~-------~~A~~~ 309 (534)
...|...+..-.+. ++. ++|..+|++..+.. +-+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 45566666654443 233 67777888777642 2356667666666653 4765 778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009470 310 FAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD-TI-TYNFLIDCHCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 310 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 387 (534)
|++..+.-.+-+...|..++..+.+.|++++|.++|+++.+. .|+ .. +|..++..+.+.|++++|..+|++..+..
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 887776311335567777777777888888888888877764 333 33 67777777777788888888888777764
Q ss_pred CCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHH
Q 009470 388 CNPNASTFNMIFRCIS-KLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-VEP--NVN 463 (534)
Q Consensus 388 ~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p--~~~ 463 (534)
. .+...|........ ..|+.++|.++|++..+.. +-+...|..++..+.+.|++++|..++++..+.. ++| ...
T Consensus 165 p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp T-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 2 23444443333222 2577778888887776643 2356677777777777778888888887777752 343 356
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 464 TYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 464 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
.|..++..+.+.|+.++|..+++++++..
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 67777777777777788877777777753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-12 Score=127.88 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHH
Q 009470 303 ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRT-EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLN 381 (534)
Q Consensus 303 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 381 (534)
+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 566666777665543 34677888888888889999 99999998888775 4557888888899999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 009470 382 SMVRKGCNPNASTFNMIFRCISKL---------GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS--------KSTD 444 (534)
Q Consensus 382 ~m~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~ 444 (534)
+..+.. |+...+..+...+... |++++|.+.+++..+.. +-+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 988874 5678888888888888 89999999999888765 33678888888888888 8899
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVE---PNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELV 521 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 521 (534)
+|...+++..+.. + -+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...|+.++|.+.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988753 3 478888889999999999999999999998864 345667888888888888888888654
Q ss_pred HH
Q 009470 522 EK 523 (534)
Q Consensus 522 ~~ 523 (534)
.+
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=107.66 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
++.+|..+...+.+.|++++|.+.|++..+.+ +-+..+|..+...|.+.|++++|++.+++..... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 45667777777777777777777777766664 3456667777777777777777777777666543 334555666666
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
.+...++++.|.+.+++.....+.+...+..+...+.+.|++++|++.|++..+... -+...|..+..+|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHHH
Confidence 666667777777776666655566666666666777777777777777766665432 2455666666666666777777
Q ss_pred HHHHHHHHHc
Q 009470 307 HDVFAEMLEV 316 (534)
Q Consensus 307 ~~~~~~m~~~ 316 (534)
++.|++.++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666666654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=107.49 Aligned_cols=166 Identities=14% Similarity=0.164 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 321 NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFR 400 (534)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 400 (534)
+...|..+...+.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34445555555555555555555555555443 334455555555555555555555555555544322 3444555555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 480 (534)
.+...++++.|.+.+.+..+.. +-+...+..+...|.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 5555566666666665555433 2245555555666666666666666666655542 3345556666666666666666
Q ss_pred HHHHHHHHHH
Q 009470 481 AYKYIREMIE 490 (534)
Q Consensus 481 A~~~~~~~~~ 490 (534)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666665
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-12 Score=123.85 Aligned_cols=229 Identities=12% Similarity=0.038 Sum_probs=167.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcc---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDK---FEP---DVIVYTNLVRGWCRAGNISEAERVFREMKMAG--I----QPNVYTYS 291 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~~~~ 291 (534)
....+...|++++|...|++.... .+. ...+|..+...|...|++++|...+++..+.- . .....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667888999999988886542 222 34678888889999999999999888876531 1 11245678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CC-CCChhhHH
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLEVGCE-PN----SITFNNLMRVHVKASRTEKVLQVYNQMKRL----GC-EADTITYN 361 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~-~~~~~~~~ 361 (534)
.+...|...|++++|++.+++..+.... .+ ..++..+..+|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999887653100 11 246778888999999999999999888762 32 33466788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCC-CHHHHHHH
Q 009470 362 FLIDCHCKDGKLEDAIKVLNSMVRK----GCNPNASTFNMIFRCISKLGD---VNGAHRMYGKMKDLKCEP-NTVTYNIL 433 (534)
Q Consensus 362 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~l 433 (534)
.+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|..++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8899999999999999999887654 111122335667788888888 77777777765 2222 23467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 009470 434 MQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 434 i~~~~~~g~~~~a~~l~~~m~~ 455 (534)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999988765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-09 Score=113.48 Aligned_cols=413 Identities=9% Similarity=0.080 Sum_probs=260.1
Q ss_pred CCChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCC-CCC
Q 009470 106 SISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQ---FDLAWHFIDLMKSRN-VEI 181 (534)
Q Consensus 106 ~~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~~-~~~ 181 (534)
+.+......+++.+.. .+.+..+..+|+.+... ++.+...|..-+..-.+.|+ ++.+..+|++..... .++
T Consensus 63 p~d~~~W~~yi~~~~~---~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVS---LKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred cCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 3455555555555432 34577777777777764 55667777777777777777 888888888777653 136
Q ss_pred CHHHHHHHHHHHHHcCCH--------HHHHHHHHHHH-HcCC-CCC-HHHHHHHHHHHH---------hcCCHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLA--------AEAVHAFNRME-EYGC-APD-KIAFSIVISILC---------RKRRASEAQSFF 241 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~~~-~~~~~~ll~~~~---------~~g~~~~A~~~~ 241 (534)
++..|..-+....+.++. +...++|+... ..|. .++ ...|...+.... ..++.+.+..+|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 777777777665555443 23346666654 3455 443 456666665433 233466677777
Q ss_pred HHhhccCCCC--HHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHH--CCCC---------------C----
Q 009470 242 DSLKDKFEPD--VIVYTNLVRGWCRAG-------------NISEAERVFREMKM--AGIQ---------------P---- 285 (534)
Q Consensus 242 ~~~~~~~~~~--~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~--~g~~---------------p---- 285 (534)
++... .|.. ..+|......--..+ +++.|...+.++.. .++. |
T Consensus 218 ~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~ 296 (679)
T 4e6h_A 218 KTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNE 296 (679)
T ss_dssp HHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTC
T ss_pred HHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCch
Confidence 77664 2221 233333222211111 12233344443321 1111 1
Q ss_pred -C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHHcCC
Q 009470 286 -N---VYTYSIVIDALCRCG-------QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVL-QVYNQMKRLGC 353 (534)
Q Consensus 286 -~---~~~~~~ll~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~~g~ 353 (534)
+ ...|...+..--..+ ..+.+..+|++++..- +-+...|...+..+...|+.++|. ++|++.... +
T Consensus 297 ~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~ 374 (679)
T 4e6h_A 297 YDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-I 374 (679)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-C
T ss_pred hHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-C
Confidence 0 123444443222221 1234556677776653 446778888888888889988896 999988864 3
Q ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCChhHHH
Q 009470 354 EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC---------NPN------------ASTFNMIFRCISKLGDVNGAH 412 (534)
Q Consensus 354 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~~~------------~~~~~~l~~~~~~~g~~~~A~ 412 (534)
+.+...|...+....+.|++++|.++|+.+.+... .|+ ..+|...+....+.|+.+.|.
T Consensus 375 P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 375 PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 45666677788888899999999999998876410 131 346777788778889999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFATS-KSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
.+|.++.+.-.......|...+..-.+. ++.+.|.++|+...+. ++-+...|..++......|+.+.|..+|++++..
T Consensus 455 ~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999998751122334444333333344 4589999999998876 4556677778888888889999999999999885
Q ss_pred CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 492 KCLKP--GSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 492 ~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
.. .+ ....|..+++.-.+.|+.+.+..+.+++.+.-
T Consensus 534 ~~-~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 534 IS-DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp SS-STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred cC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 41 11 34678888888888999999999999998763
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-11 Score=112.62 Aligned_cols=219 Identities=11% Similarity=0.045 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009470 165 DLAWHFIDLMKSRNVEITVDTFSILVRRYVR-------AGLA-------AEAVHAFNRMEEYGCAPDKIAFSIVISILCR 230 (534)
Q Consensus 165 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 230 (534)
++|..+|+++.... +.+...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665543 3455666666555542 3443 5555555555542012233445555555555
Q ss_pred cCCHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVI-VYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC-RCGQITRAHD 308 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~A~~ 308 (534)
.|++++|.++|++.....+.+.. +|..++..+.+.|++++|.++|++..+.+. .+...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555443222332 455555555555555555555555554321 12222222211111 1355555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009470 309 VFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG-CEA--DTITYNFLIDCHCKDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 309 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 385 (534)
+|++..+.. +-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555544432 2234444444555555555555555555554431 122 233444444444445555555555554444
Q ss_pred C
Q 009470 386 K 386 (534)
Q Consensus 386 ~ 386 (534)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-12 Score=128.18 Aligned_cols=211 Identities=9% Similarity=0.026 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA-SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFRE 277 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 277 (534)
++++++.+++..... +.+...+..+...+...|++ ++|++.|++..+..+.+..+|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555444322 23455566666666666666 6666666665555555566666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CChhH
Q 009470 278 MKMAGIQPNVYTYSIVIDALCRC---------GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA--------SRTEK 340 (534)
Q Consensus 278 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~ 340 (534)
..+. .|+...+..+...|... |++++|++.+++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6654 34455666666666666 66666666666666553 33455666666666666 66666
Q ss_pred HHHHHHHHHHcCCC---CChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 009470 341 VLQVYNQMKRLGCE---ADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMY 415 (534)
Q Consensus 341 a~~~~~~~~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 415 (534)
|.+.|++..+.. + .+...|..+..+|...|++++|.+.|++..+.... +...+..+..++...|++++|.+.+
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666543 2 35556666666666666666666666666655322 4445555556666666666555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-13 Score=127.11 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSR-------NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY------G 213 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 213 (534)
...++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|++.+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4557788888888899999999999888763 23445677888888999999999999998887653 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 009470 214 C-APDKIAFSIVISILCRKRRASEAQSFFDSLKDK--------FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA--- 281 (534)
Q Consensus 214 ~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 281 (534)
- +....++..+...+...|++++|.+.+++.... .+....++..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123456777778888888888888888876532 1234456777788888888888888888877653
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 282 ---GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 282 ---g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
+..| ...++..+...|...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 244567777778888888888888877765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=126.26 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREMKMA-------GIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV------G 317 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~ 317 (534)
+..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555555555441 11122344555555555566666666555555432 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC---
Q 009470 318 C-EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL------GC-EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK--- 386 (534)
Q Consensus 318 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 386 (534)
. ......+..+...+...|++++|...++++.+. +. ......+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 112344555555555566666666655555432 11 112334555555566666666666666555443
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 387 ---GCNP-NASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 387 ---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
+..| ...++..+..++...|++++|.+.++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 223455555566666666666666665543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.6e-11 Score=114.99 Aligned_cols=230 Identities=10% Similarity=0.016 Sum_probs=132.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---C-CCHHHH
Q 009470 257 NLVRGWCRAGNISEAERVFREMKMAGI-QPN----VYTYSIVIDALCRCGQITRAHDVFAEMLEVG--C---E-PNSITF 325 (534)
Q Consensus 257 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~---~-~~~~~~ 325 (534)
.....+...|++++|+..|++..+... .++ ...+..+...|...|++++|...+++..+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777777777777764311 112 3456667777777777777777777665421 0 1 113456
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 009470 326 NNLMRVHVKASRTEKVLQVYNQMKRL----GCE-ADTITYNFLIDCHCKDGKLEDAIKVLNSMVR-----KGCNPNASTF 395 (534)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~ 395 (534)
+.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|...+++..+ ... ....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHH
Confidence 66667777777777777777766542 111 1124556666777777777777777776665 322 225556
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHH
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLK----CEPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENEVEPN-VNTYRI 467 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~-~~~~~~ 467 (534)
..+...+.+.|++++|...+++..+.. .......+..+...+...++ +++|+..+++ .+..++ ...+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 666667777777777777777665421 11112234444445555555 4555554444 221222 234455
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Q 009470 468 LITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+...|...|++++|.+.|+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 66666677777777777666654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-09 Score=109.81 Aligned_cols=391 Identities=11% Similarity=0.062 Sum_probs=269.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHH
Q 009470 131 VLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL---AAEAVHAFN 207 (534)
Q Consensus 131 al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~ 207 (534)
.+.-|+..+... +.+...|..++..+.+.+.++.+..+|+.+...- +.+...|..-+..-.+.|+ ++.+.++|+
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 343444444332 4689999999999999999999999999999884 6788999999999999999 999999999
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHhhcc--C--CCCHHHHHHHHHHHH---------hc
Q 009470 208 RMEEYG-CAPDKIAFSIVISILCRKRRA--------SEAQSFFDSLKDK--F--EPDVIVYTNLVRGWC---------RA 265 (534)
Q Consensus 208 ~m~~~g-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~~~--~--~~~~~~~~~li~~~~---------~~ 265 (534)
+..... ..|+...|...+....+.++. +...++|+..... . ..+...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998753 148888888888766665553 3345777775542 2 335678888887654 34
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC-----------
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG-------------QITRAHDVFAEMLEV--GCE----------- 319 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-------------~~~~A~~~~~~m~~~--~~~----------- 319 (534)
++++.+.++|+++.......-..+|......--..+ +++.|...+.++... ++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 567889999999985322211234433322211111 123334444443221 111
Q ss_pred ----C-----C---HHHHHHHHHHHHHcC-------ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHH-HH
Q 009470 320 ----P-----N---SITFNNLMRVHVKAS-------RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAI-KV 379 (534)
Q Consensus 320 ----~-----~---~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~ 379 (534)
| + ...|...+..--..+ ..+.+..+|++....- +-+...|...+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 1 234555554332222 1234567788887653 557888888888888999999997 99
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHH
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLK---------CEPN------------TVTYNILMQMFA 438 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~li~~~~ 438 (534)
+++..... +.+...+...+....+.|+++.|.++|+++.+.. -.|+ ..+|...++...
T Consensus 367 l~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 99998753 3466677788888899999999999999987631 0132 346888888888
Q ss_pred hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHH
Q 009470 439 TSKSTDMVLKLKKEMEEN-EVEPNVNTYRILITMYCGM-GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQK 516 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 516 (534)
+.|+.+.|..+|....+. + ......|...+..-.+. ++++.|.++|+..++.. +-+...+..+++.....|+.+.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~ 522 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQ 522 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHH
Confidence 899999999999999886 2 22334444333333344 45999999999999973 4567777889998899999999
Q ss_pred HHHHHHHHHHcCC
Q 009470 517 HEELVEKMVDRGF 529 (534)
Q Consensus 517 a~~~~~~~~~~g~ 529 (534)
|+.+|++.++...
T Consensus 523 AR~lferal~~~~ 535 (679)
T 4e6h_A 523 VKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHTTTSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-10 Score=110.44 Aligned_cols=163 Identities=12% Similarity=-0.024 Sum_probs=80.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHH
Q 009470 152 HEMINLAGKVRQFDLAWHFIDLMKSRNVEITV----DTFSILVRRYVRAGLAAEAVHAFNRMEEYGC-APDK----IAFS 222 (534)
Q Consensus 152 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~ 222 (534)
......+...|+++.|...+++........+. .++..+...+...|++++|.+.+++..+..- ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33344555667777777777766554322222 1345555666666777777776666543210 0111 1234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcc-----CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHH
Q 009470 223 IVISILCRKRRASEAQSFFDSLKDK-----FE--P-DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ----PNVYTY 290 (534)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~-----~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~ 290 (534)
.+...+...|++++|.+.+++.... .+ + ....+..+...+...|++++|...+++..+.... .....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4445555566666666665554321 10 1 2234444555555556666665555555432111 012334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 291 SIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
..+...+...|++++|...+++..
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555555555544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-10 Score=110.22 Aligned_cols=299 Identities=10% Similarity=0.116 Sum_probs=201.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPD-V----IVYTNLVRGWCRAGNISEAERVFREMKMAGI-QPN----VYTY 290 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~ 290 (534)
.......+...|++++|...+++.....+.+ . .+++.+...+...|++++|.+.+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3344556677899999999998876544333 2 2566777888889999999999988765311 112 2335
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC----Chhh
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEV----GCE--P-NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA----DTIT 359 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~----~~~~ 359 (534)
..+...+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++..+..-.. ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888999999999999887653 221 2 23456667788889999999999998887643211 2346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHH
Q 009470 360 YNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--ASTFN----MIFRCISKLGDVNGAHRMYGKMKDLKCEP---NTVTY 430 (534)
Q Consensus 360 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~ 430 (534)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+....+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77788888899999999999998875421111 11111 23344778899999999998887543221 12356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 431 NILMQMFATSKSTDMVLKLKKEMEEN----EVEPNV-NTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 431 ~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
..+...+...|++++|...+++..+. |..++. ..+..+..++...|++++|...+++.++.. +. ...+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---~~----~g~~ 329 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA---NR----TGFI 329 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----HCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh---cc----ccHH
Confidence 67778888899999999988887542 222222 256666778888899999999999888743 11 1123
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 009470 506 QQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 506 ~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
..+...| +....+++.+.+.+
T Consensus 330 ~~~~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 330 SHFVIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HHHHTTH--HHHHHHHHHHHHTT
T ss_pred HHHHHcc--HHHHHHHHHHHhCC
Confidence 3444445 56677777766543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-10 Score=113.96 Aligned_cols=307 Identities=7% Similarity=0.006 Sum_probs=203.9
Q ss_pred CCHHHHHHHHHHH--HccCChHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHH--HHcCCHHHHH---------HHHHH
Q 009470 146 HSPDLYHEMINLA--GKVRQFDLAWHFIDLMKSR--NVEIT--VDTFSILVRRY--VRAGLAAEAV---------HAFNR 208 (534)
Q Consensus 146 ~~~~~~~~li~~~--~~~~~~~~A~~~~~~m~~~--~~~~~--~~~~~~li~~~--~~~g~~~~A~---------~~~~~ 208 (534)
++..+-+.+-+.| .+.+++++|..+++++.+. ....+ ...|-.++..- ...+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 3455556666666 6788888888888877553 22122 23333333321 1112221222 55555
Q ss_pred HHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 209 MEEYGCAPDK----IAFSIVISILCRKRRASEAQSFFDSLKDK---FE---PDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 209 m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
+.....+.+. ..+......+...|++++|...|++.... .+ ....++..+...|...|++++|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432111111 11223344567889999999999987542 11 13467888999999999999999999887
Q ss_pred HHC----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 009470 279 KMA----GI-QP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEV----GCE-PNSITFNNLMRVHVKASRTEKVLQVYNQ 347 (534)
Q Consensus 279 ~~~----g~-~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~ 347 (534)
.+. +- .+ ...+++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|.+.+++
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 653 11 11 2456788889999999999999999887653 111 1234677788899999999999999998
Q ss_pred HHHc----CCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---hhHHHHHHH
Q 009470 348 MKRL----GCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGC----NPNASTFNMIFRCISKLGD---VNGAHRMYG 416 (534)
Q Consensus 348 ~~~~----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~ 416 (534)
..+. +.+....++..+...|.+.|++++|...+++..+... ......+..+...+...|+ +++|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8761 2233467788899999999999999999999887521 2223455666667777788 777777776
Q ss_pred HHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 417 KMKDLKCEP-NTVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 417 ~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
+. +..+ ....+..+...|...|++++|...+++..+
T Consensus 328 ~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 328 KK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 63 2222 234567788899999999999999988764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-10 Score=99.64 Aligned_cols=158 Identities=13% Similarity=0.059 Sum_probs=65.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 224 VISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQI 303 (534)
Q Consensus 224 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 303 (534)
+...+...|++++|.+.++++....+.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence 33334444444444444444433333344444444444444444444444444443321 11233344444444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Q 009470 304 TRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSM 383 (534)
Q Consensus 304 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 383 (534)
++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 93 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 93 DLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444332 2233344444444444444444444444444332 223334444444444444444444444443
Q ss_pred H
Q 009470 384 V 384 (534)
Q Consensus 384 ~ 384 (534)
.
T Consensus 171 ~ 171 (186)
T 3as5_A 171 N 171 (186)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-10 Score=100.37 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=78.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555555555555555555554432 2344555555555555555555555555554432 233444444445555
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
..|++++|.+.++++....+.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555444444444444445555555555555555554444332 11334444444444444444444444
Q ss_pred HHHHH
Q 009470 310 FAEML 314 (534)
Q Consensus 310 ~~~m~ 314 (534)
++++.
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-10 Score=120.95 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
+++.|+.+..++.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666666666666666666655553 3345566666666666666666666666655543 223455555555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
++.+.|++++|++.|++..+..+.+..+|+.+...|.+.|++++|++.|++..+.... +...|..+...|...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666555544455555666666666666666666666555553211 344555555555555555555
Q ss_pred HHHHHHHHH
Q 009470 307 HDVFAEMLE 315 (534)
Q Consensus 307 ~~~~~~m~~ 315 (534)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-10 Score=121.28 Aligned_cols=167 Identities=10% Similarity=0.003 Sum_probs=83.5
Q ss_pred hHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 009470 109 PSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSI 188 (534)
Q Consensus 109 ~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 188 (534)
|............+...+++++|+..|+.+.+.. +.+...|+.+..+|.+.|++++|...|++..+.+ +.+..+|..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4444444444444444445555555555554421 2234455555555555555555555555555443 234455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (534)
+...|...|++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|++.|++..+..+.+...|..+...+...|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 5555555555555555555554432 223445555555555555555555555555444444455555555555555555
Q ss_pred HHHHHHHHHHH
Q 009470 269 SEAERVFREMK 279 (534)
Q Consensus 269 ~~A~~~~~~m~ 279 (534)
++|.+.++++.
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-09 Score=98.58 Aligned_cols=133 Identities=14% Similarity=0.001 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
++..+......+.+.|++++|...|++..+.+.+++...+..+...+...|++++|++.|++..+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 3445555555555555555555555555544422344444445555555555555555555554432 122334444555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDV-------IVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.+...|++++|++.+++.....+.+. .+|..+...+...|++++|++.|++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 55555555555555555444433344 2344444444444444444444444443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-09 Score=97.35 Aligned_cols=150 Identities=14% Similarity=0.045 Sum_probs=97.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
+...+......+...|++++|++.|++..+...+++...+..+..++...|++++|++.|++.....+.+..+|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45677777777777788888888887777654325666666677777777777777777777766656666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNV-------YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPN---SITFNNLMRV 331 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~ 331 (534)
+...|++++|++.+++..+.... +. ..|..+...+...|++++|++.+++..+. .|+ ...+..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 77777777777777777664221 23 33555556666666666666666666654 232 3444445555
Q ss_pred HHH
Q 009470 332 HVK 334 (534)
Q Consensus 332 ~~~ 334 (534)
+..
T Consensus 163 ~~~ 165 (228)
T 4i17_A 163 FYN 165 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=108.70 Aligned_cols=134 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-------
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEY------GCAP-DKIAFSIVISILCRKRRASEAQSFFDSLKDK------- 247 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------- 247 (534)
...++..+...|...|++++|++.+++..+. +-.| ...++..+...+...|++++|.+.+++....
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3455666666666666666666666665432 1111 2334555556666666666666666554322
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 248 -FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA------GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 248 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
.+....++..+...+...|++++|...++++.+. +..| ...++..+...|...|++++|.+.++++.+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223455666666666666666666666666543 1111 234555566666666666666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.4e-10 Score=105.61 Aligned_cols=165 Identities=10% Similarity=0.014 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCC-C----H
Q 009470 324 TFNNLMRVHVKASRTEKVLQVYNQMKRLGC---EA--DTITYNFLIDCHCKD-GKLEDAIKVLNSMVRKGCNP-N----A 392 (534)
Q Consensus 324 ~~~~li~~~~~~g~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~----~ 392 (534)
+|+.+..+|.+.|++++|+..+++..+... .+ -..++..+...|... |++++|...+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444455555555555555555544433210 00 023455666667664 77777777777666531100 1 3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT------VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNV---- 462 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~---- 462 (534)
.++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...+++..+. .|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 45667777777778888888888777765422211 14566666777778888888888777653 2221
Q ss_pred --HHHHHHHHHHH--hCCCHHHHHHHHHHHHH
Q 009470 463 --NTYRILITMYC--GMGHWNNAYKYIREMIE 490 (534)
Q Consensus 463 --~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 490 (534)
..+..++.++. ..+++++|++.|+++..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 13344555554 45678888888876654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-10 Score=106.86 Aligned_cols=133 Identities=14% Similarity=0.143 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDK--------FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA------G- 282 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g- 282 (534)
..++..+...+...|++++|+..+++.... .+....++..+...|...|++++|.+.+++..+. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777777888888888888888775432 1334556777777888888888888877776553 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 283 IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV------GCEP-NSITFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
.+.....+..+...|...|++++|.+.++++.+. +..| ...++..+..++...|++++|...+++..+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122455666677777777777777777766554 1111 234555666666666777666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-08 Score=91.28 Aligned_cols=79 Identities=9% Similarity=0.030 Sum_probs=33.3
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI-QPNVYTYSIVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
|+..|+++....+++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444443332223333333444444444444444444444433322 11233344444444444444444444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-08 Score=92.54 Aligned_cols=179 Identities=7% Similarity=0.013 Sum_probs=86.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 271 AERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC-EPNSITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 271 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554433 23334444555555566666666666655544432 1244455555556666666666666666655
Q ss_pred HcCCCC-----ChhhHHHHHHHH--HHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 350 RLGCEA-----DTITYNFLIDCH--CKDG--KLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 350 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 23 233344444332 1222 566666666665544 23322223333355556666666666654433
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 421 LK---------CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN 456 (534)
Q Consensus 421 ~~---------~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 456 (534)
.. -+-|..++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 10 01244444334333333444 555566665553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.3e-09 Score=84.35 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
|..+...+...|++++|+++++++.+.+ +.+...+..+...+...|++++|...++++....+.+...+..++..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3444444555555555555555544432 223444444445555555555555555554443344445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 555555555555544321 13444555555555555555555555555443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.8e-09 Score=95.23 Aligned_cols=187 Identities=12% Similarity=0.066 Sum_probs=113.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C-CCHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT---VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGC-A-PDKIA 220 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~~ 220 (534)
.++..+......+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... . ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677777788888888888888888887764 233 67788888888888888888888888876531 1 12445
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 009470 221 FSIVISILCR--------KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSI 292 (534)
Q Consensus 221 ~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 292 (534)
+..+..++.. .|++++|+..|+++....+.+......+.......++. ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~------------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL------------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 6667777777 88888888888887766555544442221110000000 011234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CChhHHHHHHHHHHHc
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEVGCEP--NSITFNNLMRVHVKA----------SRTEKVLQVYNQMKRL 351 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~ 351 (534)
+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4455555666666666666555542110 123444445555443 5556666666665554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=8e-09 Score=83.74 Aligned_cols=129 Identities=14% Similarity=0.162 Sum_probs=77.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.++++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45555666666666666666666665543 2345556666666666666666666666665543 334555555666666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
..|++++|.+.++++....+.+..++..++..+.+.|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665554455556666666666666666666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-09 Score=101.40 Aligned_cols=164 Identities=11% Similarity=0.056 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCC--C----CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----H
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFE--P----DVIVYTNLVRGWCRA-GNISEAERVFREMKMAGIQP-N----V 287 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p-~----~ 287 (534)
+|+.+..+|.+.|++++|+..+++.....+ . -..+++.+...|... |++++|+..|++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 444444455555555555554444322100 0 133566666667664 77777777777665421000 1 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----
Q 009470 288 YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNS------ITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEAD----- 356 (534)
Q Consensus 288 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~----- 356 (534)
.++..+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|...|++..+.. |+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcH
Confidence 45666677777777777777777777665322111 145556666777777777777777765431 21
Q ss_pred -hhhHHHHHHHHH--HcCChHHHHHHHHHHHH
Q 009470 357 -TITYNFLIDCHC--KDGKLEDAIKVLNSMVR 385 (534)
Q Consensus 357 -~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 385 (534)
...+..++.++. ..+++++|...|+.+..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 112333444443 34567777777766544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-08 Score=94.23 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC---CCHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD---KIAFSIVISILCRKRRASEAQSFFDSLKDKFE---PDVIVY 255 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~ 255 (534)
+...+..+...+.+.|++++|++.|+++.+.. +.+ ...+..+..++.+.|++++|+..|+++....| ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34444455555555555555555555554432 111 33444444555555555555555555443322 112334
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHH
Q 009470 256 TNLVRGWCR--------AGNISEAERVFREMKM 280 (534)
Q Consensus 256 ~~li~~~~~--------~g~~~~A~~~~~~m~~ 280 (534)
..+..++.+ .|++++|+..|+++.+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 444444444 4555555555554444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-08 Score=90.19 Aligned_cols=161 Identities=7% Similarity=0.018 Sum_probs=78.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 009470 152 HEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSI----------------LVRRYVRAGLAAEAVHAFNRMEEYGCA 215 (534)
Q Consensus 152 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~ 215 (534)
-.....+.+.|++++|...|++..+.+ +.+...|.. +...|.+.|++++|++.|++..+.. +
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-P 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C
Confidence 334444556666666666666665543 223334444 5555555666666666665555543 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 009470 216 PDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN--ISEAERVFREMKMAGIQPNVYTYSIV 293 (534)
Q Consensus 216 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l 293 (534)
-+...+..+..++...|++++|+..|++.....|.+..+|..+...|...|+ .+.+...++.... ..|....+...
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~ 163 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRD 163 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHH
Confidence 3445555555555555666666665555555445555555555555544332 2233333333321 11112222223
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 009470 294 IDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
..++...|++++|+..|++.++.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 33444455555555555555543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-08 Score=90.70 Aligned_cols=138 Identities=14% Similarity=0.054 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 009470 361 NFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATS 440 (534)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 440 (534)
..+..+|.+.|++++|...+++..+.... +...+..+..++...|++++|...|++..+.. +-+..+|..+...|...
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 34778888899999999999988887533 67888888899999999999999999988765 33677888888777665
Q ss_pred CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 441 KS--TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 441 g~--~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
|+ .+.+...++.... ..|....+.....++...|++++|+..|+++++ +.|+......+.
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l~ 197 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 53 3344555554432 122223344455566778999999999999998 468766554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-07 Score=85.69 Aligned_cols=217 Identities=9% Similarity=0.010 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 009470 165 DLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG--LAAEAVHAFNRMEEYGCAPDKIAFSIVISIL----CRK---RRAS 235 (534)
Q Consensus 165 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~----~~~---g~~~ 235 (534)
++|+++++.+...+ +-...+|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555554 334455555555555555 5666666666655543 22333444333333 333 4556
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHHH
Q 009470 236 EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS--EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ------ITRAH 307 (534)
Q Consensus 236 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------~~~A~ 307 (534)
+++++++++.+..+.+..+|+.-.-.+.+.|+++ ++++.++++.+.... |...|+.....+.+.|. +++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 6666666665555556666665555555555555 666666666655433 55555544444444444 55666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK-VLQVYNQMKRLG--CEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
+.++.++... +-|...|+-.-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666665554 3355566555555555555322 333444433221 12344455555555555555555555555554
Q ss_pred H
Q 009470 385 R 385 (534)
Q Consensus 385 ~ 385 (534)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.01 E-value=5e-07 Score=84.33 Aligned_cols=216 Identities=9% Similarity=0.070 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---CCHHH
Q 009470 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG--NISEAERVFREMKMAGIQPNVYTYSIVIDAL----CRC---GQITR 305 (534)
Q Consensus 235 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---g~~~~ 305 (534)
++|++.++.+....|.+..+|+.-...+...| ++++++++++.+...+.+ +..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34555555544444444555555555555554 555555555555544322 333333332222 222 44555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC------hHHHH
Q 009470 306 AHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTE--KVLQVYNQMKRLGCEADTITYNFLIDCHCKDGK------LEDAI 377 (534)
Q Consensus 306 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~------~~~A~ 377 (534)
++++++.+.+.. +-+..+|+--.-++.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.|+ +++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 555555555543 224445544444444445444 5555555555443 3344444443333333333 44444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 378 KVLNSMVRKGCNPNASTFNMIFRCISKLGDVNG-AHRMYGKMKDLK--CEPNTVTYNILMQMFATSKSTDMVLKLKKEME 454 (534)
Q Consensus 378 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 454 (534)
+.+++++...+. |...|+-....+.+.|+... +..+..++.+.+ -..+...+..++..|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 444444444322 44444444444444443222 222333332211 01233444444444444444444444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=7e-08 Score=85.71 Aligned_cols=176 Identities=13% Similarity=0.051 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC----ChHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDG----KLEDAIKVL 380 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 380 (534)
+|++.|++..+.| +...+..+...|...+++++|.++|++..+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 55666666666666777777777777666654 44555555555555 4 666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISK----LGDVNGAHRMYGKMKDLKCE-PNTVTYNILMQMFAT----SKSTDMVLKLKK 451 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~l~~ 451 (534)
++..+.| +...+..+...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|..+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666554 45555566666655 56666666666666654411 014555566666655 556666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhC-C-----CHHHHHHHHHHHHHcC
Q 009470 452 EMEENEVEPNVNTYRILITMYCGM-G-----HWNNAYKYIREMIEEK 492 (534)
Q Consensus 452 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~~~~~~ 492 (534)
+..+. ..+...+..|...|... | ++++|+++|++..+.+
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66654 12333444455555432 2 5666666666666543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.5e-09 Score=110.15 Aligned_cols=173 Identities=12% Similarity=0.021 Sum_probs=107.5
Q ss_pred HhcCCHHHHHHHHHHhh--------ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 229 CRKRRASEAQSFFDSLK--------DKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
...|++++|++.+++.. ...+.+...+..+...+.+.|++++|++.|+++.+.+.. +...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 45667777777777665 444556666677777777777777777777776654322 455666666667777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHH
Q 009470 301 GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVL 380 (534)
Q Consensus 301 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 380 (534)
|++++|++.|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777766654 2245566666666777777777 77777666654 345566666667777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009470 381 NSMVRKGCNPNASTFNMIFRCISKLG 406 (534)
Q Consensus 381 ~~m~~~~~~~~~~~~~~l~~~~~~~g 406 (534)
+++.+.+.. +...+..+..++...+
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccC
Confidence 766654311 2445555555554433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-09 Score=110.36 Aligned_cols=174 Identities=7% Similarity=-0.038 Sum_probs=146.7
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 194 VRAGLAAEAVHAFNRME--------EYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 194 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.|++..+..+.+...|..+...+.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999987 432 445678889999999999999999999999887788999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 009470 266 GNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVY 345 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 345 (534)
|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999886432 57788899999999999999 99999999875 447888999999999999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHHcCC
Q 009470 346 NQMKRLGCEADTITYNFLIDCHCKDGK 372 (534)
Q Consensus 346 ~~~~~~g~~~~~~~~~~li~~~~~~g~ 372 (534)
++..+.. +.+...+..+..++...++
T Consensus 558 ~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HhhcccC-cccHHHHHHHHHHHHccCC
Confidence 9988764 3346677777777766555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.98 E-value=4.1e-06 Score=84.31 Aligned_cols=354 Identities=8% Similarity=-0.018 Sum_probs=207.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH-cCCC-CCHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL-AAEAVHAFNRMEE-YGCA-PDKIAFSIVIS 226 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~-~g~~-~~~~~~~~ll~ 226 (534)
+|...+..+-. |+++.+..+|++.... .|+...|...+....+.+. .+....+|+.... .|.. .+...|...+.
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 33333333333 6777777777777664 3577777777776666653 3455666666553 3432 24555555555
Q ss_pred HHH----hcCCHHHHHHHHHHhhccCCCC--HHHHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCCCH
Q 009470 227 ILC----RKRRASEAQSFFDSLKDKFEPD--VIVYTNLVRGWC-------------RAGNISEAERVFREMKMAGIQPNV 287 (534)
Q Consensus 227 ~~~----~~g~~~~A~~~~~~~~~~~~~~--~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~ 287 (534)
.+. ..|+.+.+.++|++... .|.. ...|......-. ..+.+..|..+++++...-...+.
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~-~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQ-TPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHh-ChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 432 23556677777777655 2221 112222211110 011233344444444321000133
Q ss_pred HHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhH
Q 009470 288 YTYSIVIDALCRC--GQ-----ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITY 360 (534)
Q Consensus 288 ~~~~~ll~~~~~~--g~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 360 (534)
..|...+..-... |- .+.+..+|++++... +-+...|...+..+.+.|+.++|..++++.... +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 3555544432221 11 345677888888754 456788888888888999999999999999887 3333333
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 009470 361 NFLIDCHCKDGKLEDAIKVLNSMVRKG---------C---NPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTV 428 (534)
Q Consensus 361 ~~li~~~~~~g~~~~A~~~~~~m~~~~---------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 428 (534)
. .|....+.++. ++.+.+.- . ......|...+....+.++.+.|..+|++. ... ..+..
T Consensus 250 ~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 L----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp H----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred H----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 2 22222222222 22222210 0 011245666677777788899999999999 321 23445
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 009470 429 TYNILMQMFAT-SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQ 507 (534)
Q Consensus 429 ~~~~li~~~~~-~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 507 (534)
.|...+..-.. .++.+.|..+|+...+.. +-+...+...+....+.|+.+.|..+|+++. .....|...++.
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~f 393 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEY 393 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 55433332222 346999999999988752 3345566777887788999999999999872 246778888888
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 009470 508 LRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 508 ~~~~g~~~~a~~~~~~~~~ 526 (534)
-...|+.+.+..+++++.+
T Consensus 394 E~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 394 EFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7888999999999988875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.97 E-value=7.5e-08 Score=86.40 Aligned_cols=186 Identities=11% Similarity=-0.005 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVE--ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK----IA 220 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~ 220 (534)
++..+..+...+.+.|++++|...|+++.+.... .....+..+..+|.+.|++++|++.|+++.+.. |+. .+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4556667777888899999999999998876422 124678888899999999999999999988753 321 23
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 221 FSIVISILCR------------------KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 221 ~~~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
+..+..++.. .|+.++|...|+++....|.+..++........ +...+.
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~--- 147 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH---
Confidence 4444444443 456777777777776665555444432211100 000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 283 IQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEP--NSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 283 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
.....+...|.+.|++++|+..|+++++..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 012345677888999999999999988763111 12467778889999999999999999888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=87.45 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=99.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI-LC 229 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~ 229 (534)
+......+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++..+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566667777777777777766554 3456777777777777777777777777765543 344333222211 11
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP-NVYTYSIVIDALCRCGQITRAHD 308 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~A~~ 308 (534)
..++..+|...+++.....|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22223345666666665556666777777777777777777777777766653322 24456666666777777777776
Q ss_pred HHHHHH
Q 009470 309 VFAEML 314 (534)
Q Consensus 309 ~~~~m~ 314 (534)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-08 Score=92.33 Aligned_cols=163 Identities=10% Similarity=0.019 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYS-IVIDA 296 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~ 296 (534)
...+..+...+.+.|++++|...|++.....|.+...+..+...+.+.|++++|...++++... .|+..... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 3344445555555555555555555555544555555555555556666666666555555443 22322111 11222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHHHcCChHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE-ADTITYNFLIDCHCKDGKLED 375 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~ 375 (534)
+...++.++|.+.+++..+.. +.+...+..+...+...|++++|...|.++.+..-. .+...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 344455555555555555543 234555555555555555555555555555544211 113445555555555555555
Q ss_pred HHHHHHHH
Q 009470 376 AIKVLNSM 383 (534)
Q Consensus 376 A~~~~~~m 383 (534)
|...+++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-07 Score=83.36 Aligned_cols=175 Identities=13% Similarity=0.126 Sum_probs=88.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHH
Q 009470 341 VLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLG----DVNGAHRMYG 416 (534)
Q Consensus 341 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~ 416 (534)
|.+.|++..+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + +.++|.++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555554432 44455555555555555666666555555543 34445555555544 4 5555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----CCCHHHHHHHHHH
Q 009470 417 KMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVE-PNVNTYRILITMYCG----MGHWNNAYKYIRE 487 (534)
Q Consensus 417 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~ 487 (534)
+..+.| +...+..|...|.. .+++++|.+++++..+.|.. .+...+..|...|.. .+++++|+++|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555533 44445555555544 45555555555555554310 013444555555555 4555556665555
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 009470 488 MIEEKCLKPGSSVYEMVLQQLRRA-G-----QLQKHEELVEKMVDRG 528 (534)
Q Consensus 488 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~g 528 (534)
..+.+ .+...+..|...|... | +.++|.+++++..+.|
T Consensus 155 A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55531 2233344444444332 2 5555555555555554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.3e-08 Score=91.03 Aligned_cols=165 Identities=10% Similarity=0.021 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-H
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIV-I 225 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-l 225 (534)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|++.++++.... |+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 44556666666666777777777777666654 3455666666777777777777777776665432 343322222 2
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ-PNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~ 304 (534)
..+.+.++.++|.+.+++.....|.+...+..+...+...|++++|+..|.++.+.... .+...+..++..|...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 22445556666666666666555666666666666666666666666666666654322 12445666666666666666
Q ss_pred HHHHHHHHHH
Q 009470 305 RAHDVFAEML 314 (534)
Q Consensus 305 ~A~~~~~~m~ 314 (534)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666665543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-07 Score=84.16 Aligned_cols=187 Identities=10% Similarity=0.069 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-C-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 009470 321 NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE-A-DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA--STFN 396 (534)
Q Consensus 321 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~ 396 (534)
+...+..+...+.+.|++++|...|+++.+..-. + ....+..+..+|.+.|++++|...|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777888999999999999998876311 1 1356778888999999999999999999887432111 2444
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 397 MIFRCISK------------------LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEV 458 (534)
Q Consensus 397 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 458 (534)
.+..++.. .|+.++|...|+++.+.... +...+...... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHHH----
Confidence 45555543 45666666666666654311 22222111110 00000000
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS----SVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
.....+...|.+.|++++|+..|+++++.. |+. ..+..+..++.+.|+.++|.+.++.+...+.
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY---PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC---cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 111345667888999999999999999864 432 4677888999999999999999998887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-08 Score=93.17 Aligned_cols=124 Identities=14% Similarity=0.074 Sum_probs=57.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--hhhHHHHH
Q 009470 295 DALCRCGQITRAHDVFAEMLEVGC---EP--NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC---EAD--TITYNFLI 364 (534)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~---~~~--~~~~~~li 364 (534)
..|...|++++|.+.+.+..+... .+ -..+|+.+..+|.+.|++++|+..|++..+.-. .+. ..++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566666666666665543210 00 123455555556666666666666655443210 011 23344444
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 365 DCHCKDGKLEDAIKVLNSMVRKGCNP-----NASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
..|.. |++++|...+++..+..... ...++..+...+.+.|++++|.+.|++..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444 55555555555444321000 02334444444455555555555554443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-08 Score=85.60 Aligned_cols=106 Identities=7% Similarity=-0.047 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 232 RRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFA 311 (534)
Q Consensus 232 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 311 (534)
|++++|++.++......+.+...+..+...|.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|+
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 34444444444433322222333334444444444444444444444433211 33344444444444444444444444
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 009470 312 EMLEVGCEPNSITFNNLMRVHVKASRTE 339 (534)
Q Consensus 312 ~m~~~~~~~~~~~~~~li~~~~~~g~~~ 339 (534)
+..+.. +-+...|..+...+.+.|+.+
T Consensus 90 ~al~~~-p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 90 RSVELN-PTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCChH
Confidence 444432 113334444444444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.5e-08 Score=84.80 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 226 SILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 226 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
..+.+.|++++|...|++.....|.+...+..+...+.+.|++++|+..+++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 344445555555555554444334444555555555555555555555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=94.39 Aligned_cols=226 Identities=12% Similarity=0.066 Sum_probs=154.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 195 RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR-KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAER 273 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 273 (534)
..|++++|.+++++..+.. +. .+.+ .++++.|...|++. +..|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence 3577888888888876532 11 1222 57788887777654 456788999999999
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHHcCChhHHHH
Q 009470 274 VFREMKMA----GIQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGC---EPN--SITFNNLMRVHVKASRTEKVLQ 343 (534)
Q Consensus 274 ~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~~~li~~~~~~g~~~~a~~ 343 (534)
.|.+..+. |-.. -..+|+.+...|.+.|++++|+..+++..+.-. .+. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887653 1111 145788888999999999999999998765411 121 3567778888888 99999999
Q ss_pred HHHHHHHcCCCC-----ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 009470 344 VYNQMKRLGCEA-----DTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GCNPN-ASTFNMIFRCISKLGDVNGAHR 413 (534)
Q Consensus 344 ~~~~~~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 413 (534)
.|++..+..-.. ...++..+...|.+.|++++|...+++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887542111 1467888899999999999999999998864 21111 2255666677777899999999
Q ss_pred HHHHHHhCCCCC-CH---HHHHHHHHHHHhcCCHHHHHH
Q 009470 414 MYGKMKDLKCEP-NT---VTYNILMQMFATSKSTDMVLK 448 (534)
Q Consensus 414 ~~~~m~~~~~~p-~~---~~~~~li~~~~~~g~~~~a~~ 448 (534)
.|++.. ..... +. .....++..+ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 998887 42110 11 1233444444 4566555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.9e-08 Score=100.88 Aligned_cols=154 Identities=10% Similarity=0.006 Sum_probs=101.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 161 VRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSF 240 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~ 240 (534)
.|++++|.+.+++..+.. +.+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 367778888887776654 4456778888888888888888888888877653 34566777777788888888888888
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 009470 241 FDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC---GQITRAHDVFAEMLEVG 317 (534)
Q Consensus 241 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~~ 317 (534)
+++..+..+.+...+..+...+.+.|++++|.+.+++..+... -+...+..+...+... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8877766666777888888888888888888888888776532 2466677777777777 78888888888777764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6e-08 Score=100.23 Aligned_cols=154 Identities=9% Similarity=-0.019 Sum_probs=101.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 196 AGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVF 275 (534)
Q Consensus 196 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (534)
.|++++|++.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+..+.+...|..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467778888888776643 3356677777777888888888888888877766667778888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHHcC
Q 009470 276 REMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA---SRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 276 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~g 352 (534)
++..+... -+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 87776532 246677777777888888888888888777764 33566777777777777 77788888887777664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=9.5e-09 Score=85.78 Aligned_cols=141 Identities=7% Similarity=-0.046 Sum_probs=73.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 009470 193 YVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAE 272 (534)
Q Consensus 193 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 272 (534)
+...|++++|++.+++..... +-+...+..+...|.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 334455555555555543321 1112234445555566666666666666655555555666666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 273 RVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV-FAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 273 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
..|++..+.... +...|..+...|.+.|++++|.+. +++..+.. +-+...|......+...|
T Consensus 86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 666666554221 345555566666666666554443 35555443 224444544444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-05 Score=78.53 Aligned_cols=344 Identities=11% Similarity=-0.002 Sum_probs=218.1
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----HcCC
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQ-FDLAWHFIDLMKSR-NV-EITVDTFSILVRRYV----RAGL 198 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-~~-~~~~~~~~~li~~~~----~~g~ 198 (534)
+.+..+..+|+..... .|+.++|...+....+.+. .+....+|+..... |. +.+...|...+..+. .+|+
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 5688899999998864 3588999998888877764 45677788877654 32 346788888887654 3567
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHh
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCR-------------KRRASEAQSFFDSLKDKFE-PDVIVYTNLVRGWCR 264 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~ 264 (534)
.+.+.++|++........-...|......-.. .+.+..|..+++.+....+ .+...|...+..-..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 88999999999874211111222222211100 1223334444444432211 134456555554322
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 265 AG--N-----ISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 265 ~g--~-----~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
.+ - .+.+..+|+++.... +-+...|...+..+.+.|+.++|.+++++.... +.+...+. .|....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcc
Confidence 21 1 345678899888753 345778888888888999999999999999988 33433332 2233222
Q ss_pred hhHHHHHHHHHHHcC---------C---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009470 338 TEKVLQVYNQMKRLG---------C---EADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL 405 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 405 (534)
.++. ++.+.+.- . ......|...+..+.+.++.+.|..+|+++ +.. ..+...|...+..-...
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH
Confidence 2222 22222210 0 011245666677777788999999999999 321 23444554333322223
Q ss_pred -CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 009470 406 -GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKY 484 (534)
Q Consensus 406 -g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 484 (534)
++.+.|..+|+...+.. .-+...|...++.....|+.+.|..+|+.+. .....|...+..-...|+.+.+.++
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36999999999988743 2245566777888888999999999999972 2567788888777788999999998
Q ss_pred HHHHHH
Q 009470 485 IREMIE 490 (534)
Q Consensus 485 ~~~~~~ 490 (534)
++++.+
T Consensus 407 ~~~~~~ 412 (493)
T 2uy1_A 407 VDQKMD 412 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=5.3e-06 Score=78.26 Aligned_cols=174 Identities=8% Similarity=-0.020 Sum_probs=109.7
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHH
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK-R-RASE 236 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~ 236 (534)
+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+.+. + +.++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3344456777777776665 345666776666666666 4777777777777654 34556666665555555 5 6677
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS--------EAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ------ 302 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~------ 302 (534)
++++++++.+..+.+..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 777777777766667777766555554444444 677777777765433 66666666666666554
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 009470 303 -ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR 337 (534)
Q Consensus 303 -~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 337 (534)
++++++.+++++... +-|...|+-+-..+.+.|+
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 567777777766654 3366666665555555554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-06 Score=78.64 Aligned_cols=172 Identities=10% Similarity=0.032 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 009470 197 GLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR-RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA-G-NISEAER 273 (534)
Q Consensus 197 g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~ 273 (534)
+..++|+++++++...+ +-+..+|+.--..+...| .+++++++++.+....+.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44568999999998865 345667887777777788 599999999999888888999999888777776 7 8899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------h
Q 009470 274 VFREMKMAGIQPNVYTYSIVIDALCRCGQIT--------RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASR-------T 338 (534)
Q Consensus 274 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-------~ 338 (534)
+++++.+...+ |..+|+...-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+.++ +
T Consensus 147 ~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHH
Confidence 99999876543 6777776666666666565 7888888888776 3477777777766666665 4
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 009470 339 EKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGK 372 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 372 (534)
+++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 66777776666654 4556666665555555544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.4e-06 Score=81.53 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=113.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHH
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGC-NPNA----STFNMIFRCISKLGDVNGAHRMYGKMKDLKCE-PN----TVTYNI 432 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 432 (534)
.+..+...|++++|..++++..+... .++. ..+..+...+...|++++|...++++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888776422 1221 12334666667777888888888888763222 22 236788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC-CHHHHH
Q 009470 433 LMQMFATSKSTDMVLKLKKEMEE----N-EVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEK---CLKP-GSSVYE 502 (534)
Q Consensus 433 li~~~~~~g~~~~a~~l~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~ 502 (534)
+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|+++++++++.. +..+ -...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888999999888888763 1 11122 2367788888899999999999988877531 1112 256788
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHH
Q 009470 503 MVLQQLRRAGQ-LQKHEELVEKMVD 526 (534)
Q Consensus 503 ~l~~~~~~~g~-~~~a~~~~~~~~~ 526 (534)
.+..++.+.|+ .++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888894 6889888888764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=9.3e-07 Score=78.16 Aligned_cols=127 Identities=9% Similarity=-0.028 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRA 265 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 265 (534)
+..+...+...|++++|++.|++.. .++...+..+...+...|++++|++.|++.....+.+...|..+...+...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3345555666666666666665552 345566666666666666666666666666555555666666667777777
Q ss_pred CCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 266 GNISEAERVFREMKMAGIQ--------------P-NVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 266 g~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|++++|.+.|++..+.... | ....+..+..+|.+.|++++|.+.++...+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777666653211 1 1245666666677777777777777776665
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=7.4e-07 Score=78.82 Aligned_cols=128 Identities=12% Similarity=-0.004 Sum_probs=109.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+...|++++|...|++.. .++...|..+...|...|++++|++.|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 35566777888999999999998773 4577899999999999999999999999998764 456788999999999
Q ss_pred hcCCHHHHHHHHHHhhccCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDV----------------IVYTNLVRGWCRAGNISEAERVFREMKMAG 282 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 282 (534)
..|++++|.+.|++.....+.+. ..+..+...+.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999877554444 889999999999999999999999998764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.6e-06 Score=78.72 Aligned_cols=160 Identities=14% Similarity=0.070 Sum_probs=75.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVI------VYTNLVRGWCRAGNISEAERVFREMKMAGIQ-PN----VYTYSIV 293 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 293 (534)
+..+...|++++|...+++.....+.+.. .+..+...+...|++++|+..+++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34445555555555555554432211111 2223444455555666666666666552111 11 2245556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-hhhHHH
Q 009470 294 IDALCRCGQITRAHDVFAEMLEV-----GCEPN-SITFNNLMRVHVKASRTEKVLQVYNQMKRL----GCEAD-TITYNF 362 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~-----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~ 362 (534)
...|...|++++|+..++++.+. +..+. ..++..+...|.+.|++++|...+++..+. +.... ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666655421 11111 224455555556666666666555554332 11111 344555
Q ss_pred HHHHHHHcCC-hHHHHHHHHHHH
Q 009470 363 LIDCHCKDGK-LEDAIKVLNSMV 384 (534)
Q Consensus 363 li~~~~~~g~-~~~A~~~~~~m~ 384 (534)
+..+|.+.|+ +++|.+.+++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555552 355555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-06 Score=80.53 Aligned_cols=163 Identities=11% Similarity=0.038 Sum_probs=79.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HHHHHH
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPN-----ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKC---EPN--TVTYNI 432 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~ 432 (534)
.+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++..+... .+. ..+|+.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34445555555555555555544321110 01122334444555566666666665543211 111 235555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC-CHHHHH
Q 009470 433 LMQMFATSKSTDMVLKLKKEMEEN--EVEPN----VNTYRILITMYCGMGHWNNAYKYIREMIEEK---CLKP-GSSVYE 502 (534)
Q Consensus 433 li~~~~~~g~~~~a~~l~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~ 502 (534)
+...|...|++++|...+++..+. ..+.+ ..++..+...|.+.|++++|+++++++++.. +... -...|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 566666666666666666655421 00111 1355555666666666666666666655421 0000 134555
Q ss_pred HHHHHHHHcCCHHHH-HHHHHHHH
Q 009470 503 MVLQQLRRAGQLQKH-EELVEKMV 525 (534)
Q Consensus 503 ~l~~~~~~~g~~~~a-~~~~~~~~ 525 (534)
.+...+.+.|+.++| ...+++..
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH
Confidence 566666666666666 55455443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=8.3e-07 Score=74.77 Aligned_cols=126 Identities=10% Similarity=-0.003 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
.|..+...+...|++++|++.|++..+.. +.+..++..+...+...|++++|.+.+++.....+.+...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34445555555555555555555554432 22344455555555555555555555555544444455555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHH
Q 009470 265 AGNISEAERVFREMKMAGIQPNVYTY--SIVIDALCRCGQITRAHDVFAE 312 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~A~~~~~~ 312 (534)
.|++++|...+++..+.... +...+ ..++..+.+.|++++|++.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555555555555443211 22222 1222224444555555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.70 E-value=7.8e-07 Score=74.94 Aligned_cols=131 Identities=10% Similarity=-0.044 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI 227 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 227 (534)
...+..+...+...|+++.|...|++..+.. +.+..++..+...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3567788888999999999999999988875 4578899999999999999999999999998764 4567888999999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR--GWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++++|.+.|++.....+.+...+..+.. .+.+.|++++|.+.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999988776767777754444 47888999999999887643
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-06 Score=79.30 Aligned_cols=187 Identities=6% Similarity=-0.106 Sum_probs=104.1
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSIL-------VRRYVRAGLAAEAVHAFNRMEEYGCAPD--------------- 217 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 217 (534)
..++.+.|.+.|.++...+ +-....|..+ ...+.+.++..+++..+.+-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4577777777777777665 3455666666 3455554444455444444332 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HH
Q 009470 218 -------KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN--VY 288 (534)
Q Consensus 218 -------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~ 288 (534)
..........+...|++++|.+.|+.+....+.+. ....+...+.+.+++++|+..|+...... .|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 12233345556666777777777766655433333 55555666667777777777776443321 110 22
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 289 TYSIVIDALCRCGQITRAHDVFAEMLEVGCEPN--SITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 289 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
.+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 455566666667777777777766654322132 224444555666666666666666666655
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-06 Score=69.02 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISIL 228 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~ 228 (534)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|+.+++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444455555555555555444432 2234444444444445555555555554444332 22333444444444
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVIVYTNL 258 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 258 (534)
...|++++|...++++....+.+...+..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 117 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNL 117 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 444444444444444433333333333333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-06 Score=68.62 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...|..+...+...|++++|+++++++.+.. +.+..++..+...+.+.|++++|...++++....+.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 3456666666666677777777666665543 234555566666666666666666666665554455555666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009470 263 CRAGNISEAERVFREMKMA 281 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~ 281 (534)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666665543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-07 Score=79.16 Aligned_cols=154 Identities=15% Similarity=0.043 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA----GIQ-PNVYTYSIVIDALCRCGQITR 305 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~~~ 305 (534)
.|++++|.+.++.+.........++..+...+...|++++|...+++..+. |.. .....+..+...|...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 445555555333332221223444555555555555555555555554431 111 112344445555555555555
Q ss_pred HHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHHcCChH
Q 009470 306 AHDVFAEMLEV----GCEP--NSITFNNLMRVHVKASRTEKVLQVYNQMKRLGC-EAD----TITYNFLIDCHCKDGKLE 374 (534)
Q Consensus 306 A~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~ 374 (534)
|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+..- ..+ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 55555554332 1011 122344445555555555555555555432100 001 122344445555555555
Q ss_pred HHHHHHHHHH
Q 009470 375 DAIKVLNSMV 384 (534)
Q Consensus 375 ~A~~~~~~m~ 384 (534)
+|.+.+++..
T Consensus 165 ~A~~~~~~al 174 (203)
T 3gw4_A 165 EAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=70.52 Aligned_cols=103 Identities=11% Similarity=-0.064 Sum_probs=46.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009470 151 YHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCR 230 (534)
Q Consensus 151 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 230 (534)
+......+.+.|++++|.+.|++..+.+ +.+...|..+..+|.+.|++++|++.|++..+.+ +.+...|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 3344444444555555555554444443 2344444444444555555555555544444432 2233444444444444
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVY 255 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~ 255 (534)
.|++++|++.|++..+..|.+...+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~ 118 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAR 118 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 4444444444444443333333333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-07 Score=86.47 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.+++.....+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666667777777777777777766543 23556666666677777777777777777666556666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKM 280 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777766654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.8e-06 Score=77.86 Aligned_cols=163 Identities=10% Similarity=-0.018 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHhhccC----CCC--H
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK------IAFSIVISILCRKRRASEAQSFFDSLKDKF----EPD--V 252 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~--~ 252 (534)
.+...+..+...|++++|++.+++..+... ... ..+..+...+...|++++|+..+++..... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 444456666777777777777776655321 111 112223344455566666666666543211 111 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-C
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKM---A-GIQP--NVYTYSIVIDALCRCGQITRAHDVFAEMLEVG----CEP-N 321 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~~~-~ 321 (534)
.+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|++.+++..+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4566666666666666666666666552 1 1111 11355566666666666666666666554321 011 1
Q ss_pred HHHHHHHHHHHHHcCChhHH-HHHHHHH
Q 009470 322 SITFNNLMRVHVKASRTEKV-LQVYNQM 348 (534)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a-~~~~~~~ 348 (534)
..+|..+..+|.+.|+.++| ...+++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34555555666666666666 4445444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.5e-06 Score=69.82 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++..+..+.+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 345555666666666666666666665543 3345556666666666666666666666655544555666666666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 009470 264 RAGNISEAERVFREMKMA 281 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~ 281 (534)
..|++++|++.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 666666666666665553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-06 Score=70.97 Aligned_cols=116 Identities=9% Similarity=-0.058 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455555555556666666666666555543 2345555555555555555665555555555432 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
++.+.|++++|.+.|++.....+.+...+..+...+.+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 55555555555555555444333334444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=86.70 Aligned_cols=194 Identities=12% Similarity=0.046 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|++.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 56778888999999999999999999998875 4578899999999999999999999999998764 456788899999
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A 306 (534)
++...|++++|...|++.....+.+...+...+....+. .++.. +..........+......+.. + ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 999999999999999987543221111111122211111 11111 222222333334444333322 2 36888888
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHHc-CChhHHHHHHHHHHH
Q 009470 307 HDVFAEMLEVGCEPNS-ITFNNLMRVHVKA-SRTEKVLQVYNQMKR 350 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 350 (534)
++.++...+. .|+. .....+...+.+. +.+++|.++|.++.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888777665 3443 3333333334443 567778888877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-06 Score=69.19 Aligned_cols=95 Identities=9% Similarity=0.005 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR 264 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 264 (534)
.+..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34444444444444444444444444322 22333444444444444444444444444433333344444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 009470 265 AGNISEAERVFREMKM 280 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~ 280 (534)
.|++++|.+.+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.8e-07 Score=78.69 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMA----GIQP--NVYTYSIVIDALCRCGQITRAHDVFAEMLEVG---CEPN-- 321 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~-- 321 (534)
.++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+.. ..+.
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 146 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 44555566666666666666666555432 1111 13345556666666677777776666654321 0111
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 009470 322 SITFNNLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 322 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
..++..+...+...|++++|.+.+++..+
T Consensus 147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 147 ACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 22345666677777777777777766654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=70.37 Aligned_cols=118 Identities=8% Similarity=-0.097 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 181 ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
.+...|..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345666777777777777777777777766543 3355666666666667777777777777666555556666666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 261 GWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
.+.+.|++++|.+.|++..+.... +...+..+...+.+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence 777777777777777666554211 233444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-06 Score=68.67 Aligned_cols=115 Identities=14% Similarity=0.104 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (534)
.+..+...+...|++++|...+++.....+.+...+..+...+...|++++|.+.+++..+... .+...+..+...+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHHHH
Confidence 3344444444555555555555544443344444444555555555555555555544444321 123344444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 009470 300 CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKAS 336 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 336 (534)
.|++++|.+.+++..+.. +.+...+..+..++.+.|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 444444444444444432 123333444444444333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-06 Score=71.22 Aligned_cols=97 Identities=7% Similarity=-0.108 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
..+..+...+.+.|++++|.+.|+++.+.. +-+...|..+..+|...|++++|+..+++..+.. +-+...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 455566666777777777777777776654 2356667777777777777777777777776653 33456666777777
Q ss_pred HhCCCHHHHHHHHHHHHHc
Q 009470 473 CGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 473 ~~~g~~~~A~~~~~~~~~~ 491 (534)
.+.|++++|++.|+++++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.1e-07 Score=74.98 Aligned_cols=98 Identities=13% Similarity=0.001 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...+..+...+.+.|++++|++.|++..+.. +.+...|..+..++...|++++|+..|++.....|.+...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4455556666666666666666666665543 334555666666666666666666666665555555556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009470 263 CRAGNISEAERVFREMKMA 281 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~ 281 (534)
.+.|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666553
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=82.98 Aligned_cols=124 Identities=11% Similarity=-0.020 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--------------ASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
+...+..+...|.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666777777777777777777766532211 244444444444555555555555544443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009470 422 KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNA 481 (534)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 481 (534)
. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+...+.+.|++++|
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 1234444444444444444444444444444431 22334444444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.56 E-value=7e-07 Score=76.48 Aligned_cols=120 Identities=7% Similarity=0.103 Sum_probs=81.0
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 009470 160 KVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISI-LCRKRRA--SE 236 (534)
Q Consensus 160 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~ 236 (534)
..|++++|...++...+.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4466677777777666554 3456777777777777777777777777776543 3355566666666 5667776 77
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
|...+++.....+.+...+..+...+...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777776666666777777777777777777777777777765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=78.71 Aligned_cols=126 Identities=9% Similarity=-0.030 Sum_probs=59.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHHc
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEA--DTITYNFLIDCHCKD 370 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~ 370 (534)
+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .+ ....+..+..++.+.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 3444555555555555555554432 222233333445555555555555555333211 01 012444455555555
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 371 GKLEDAIKVLNSMVRKGCNPN--ASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555555555555543221122 223444444555555555555555555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.9e-07 Score=74.50 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34556667777778888888888888777654 3367777777788888888888888888877753 445667777788
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 009470 471 MYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+|...|++++|++.|+++++..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888887753
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=75.12 Aligned_cols=119 Identities=8% Similarity=0.077 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH--HHHH
Q 009470 231 KRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA-LCRCGQI--TRAH 307 (534)
Q Consensus 231 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~--~~A~ 307 (534)
.|++++|...+++.....+.+...|..+...|...|++++|...|++..+... .+...+..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 44455555555554444444555555555555555555555555555544321 134444444444 4455555 5555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
..++++.+.. +.+...+..+..++...|++++|...|+++.+.
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 5555555543 223444555555555555555555555555544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.5e-07 Score=80.12 Aligned_cols=146 Identities=12% Similarity=0.030 Sum_probs=69.6
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--------------HHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQ-PN--------------VYTYSIVI 294 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--------------~~~~~~ll 294 (534)
..|+++++.+.++.-..........+..+...+.+.|++++|+..|++..+.... ++ ...|..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 3444444444443222111113445566666667777777777777776653211 10 14455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChH
Q 009470 295 DALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLE 374 (534)
Q Consensus 295 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 374 (534)
.+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++.+
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence 55555566666655555555543 2344555555555555555555555555555442 223444444444444444444
Q ss_pred HHH
Q 009470 375 DAI 377 (534)
Q Consensus 375 ~A~ 377 (534)
++.
T Consensus 174 ~~~ 176 (198)
T 2fbn_A 174 KKD 176 (198)
T ss_dssp C--
T ss_pred HHH
Confidence 333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.6e-07 Score=80.95 Aligned_cols=132 Identities=12% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCE-P--------------NTVTYNILMQMFATSKSTDMVLKLKKEMEENEV 458 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 458 (534)
.+..+...+...|++++|.+.|++..+.... + ....|..+..+|...|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444455555556666666666555543211 0 02567777778888888888888888877753
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcC
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHE-ELVEKMVDRG 528 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~g 528 (534)
+.+...+..+..+|...|++++|++.|+++++.. +.+...+..+..++...|+.+++. ..+..|...|
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566777788888888888888888888888753 345566677777777777776666 4555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=3.6e-06 Score=80.41 Aligned_cols=87 Identities=7% Similarity=-0.132 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
..|..+..++.+.|++++|+..+++.....+.+..+|..+..+|...|++++|+..|++..+... -+...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 34444444445555555555555544444444445555555555555555555555555444321 13344444444455
Q ss_pred HcCCHHHH
Q 009470 299 RCGQITRA 306 (534)
Q Consensus 299 ~~g~~~~A 306 (534)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=7.9e-07 Score=73.76 Aligned_cols=97 Identities=11% Similarity=-0.041 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|++.|++.....+.+...+..+..+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444445555555555555555555554432 234444555555555555555555555555444444455555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 009470 263 CRAGNISEAERVFREMKM 280 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~ 280 (534)
...|++++|.+.|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00018 Score=67.46 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHHHc
Q 009470 475 MGHWNNAYKYIREMIEE 491 (534)
Q Consensus 475 ~g~~~~A~~~~~~~~~~ 491 (534)
.|..+++..++.++++.
T Consensus 288 ~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 288 LLYEKETLQYFSTLKAV 304 (331)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHh
Confidence 45566677777777663
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=6e-06 Score=69.59 Aligned_cols=99 Identities=9% Similarity=0.046 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 392 ASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 392 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
...+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..+++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3445555556666666666666666665543 2255566666666666666666666666666543 3345666666666
Q ss_pred HHhCCCHHHHHHHHHHHHHcC
Q 009470 472 YCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~ 492 (534)
|...|++++|++.|+++++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 666677777777666666643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00037 Score=65.34 Aligned_cols=130 Identities=6% Similarity=-0.083 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C
Q 009470 166 LAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL----------AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKR--R 233 (534)
Q Consensus 166 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~ 233 (534)
+|+++++.+...+ +-+..+|+.--..+...|. +++++++++.+.... +-+..+|+.-.-++.+.| .
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 5666666666655 3344555544433333322 345555555555433 334455555444444444 2
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN-ISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
+++++++++++.+..+.|-.+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+.
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~ 190 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555 45555555555554332 4444544443333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=6.5e-06 Score=65.82 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..|..+...+.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|+..+++.....+.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344455555555555555555555555432 2344555555555555666666666665555544555555666666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 009470 264 RAGNISEAERVFREMKM 280 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~ 280 (534)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666665554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.6e-06 Score=65.39 Aligned_cols=94 Identities=12% Similarity=0.004 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRC 300 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 300 (534)
+..+...+.+.|++++|+..|++.....+.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 3344444445555555555555544444444555555555555555555555555555443211 344444455555555
Q ss_pred CCHHHHHHHHHHHHH
Q 009470 301 GQITRAHDVFAEMLE 315 (534)
Q Consensus 301 g~~~~A~~~~~~m~~ 315 (534)
|++++|.+.|++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.6e-05 Score=62.04 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWC 263 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 263 (534)
..+..+...+...|++++|++.|++..+.. +.+...+..+...+...|++++|...+++.....+.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344445555555555555555555554432 2244445555555555555555555555554444445555555555555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 009470 264 RAGNISEAERVFREMKMA 281 (534)
Q Consensus 264 ~~g~~~~A~~~~~~m~~~ 281 (534)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 566666666655555543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-05 Score=61.56 Aligned_cols=104 Identities=14% Similarity=-0.029 Sum_probs=49.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+...|+++.|...++...... +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 44444445555555555555555544433 2234445555555555555555555555544432 223444444444555
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVY 255 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~ 255 (534)
..|++++|.+.+++.....+.+...+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 55555555555555444333333333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=69.14 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVH 332 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 332 (534)
..+..+...+.+.|++++|...|++....+. .+...|..+..+|.+.|++++|+..|++..... +.+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3344444444445555555555554444321 133444444444445555555555555444443 22333444444445
Q ss_pred HHcCChhHHHHHHHHHHH
Q 009470 333 VKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 333 ~~~g~~~~a~~~~~~~~~ 350 (534)
...|++++|...|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555544443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-06 Score=65.70 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE--VEPN----VNTYRI 467 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~----~~~~~~ 467 (534)
.+..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.+++..+.. ...+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 44556666666667777777766666543 2255666666667777777777777766665421 1111 235666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMV 504 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 504 (534)
+..++...|++++|++.|++.++. .|+..+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE---FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHHHHH
Confidence 777788888888888888888773 4666554433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.35 E-value=8.5e-06 Score=66.82 Aligned_cols=100 Identities=7% Similarity=-0.110 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009470 391 NASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILIT 470 (534)
Q Consensus 391 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~ 470 (534)
+...+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|...+++..+.. +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34556677788889999999999999988765 3477888889999999999999999999998864 556677888889
Q ss_pred HHHhCCCHHHHHHHHHHHHHcC
Q 009470 471 MYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+|...|++++|++.|+++++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998854
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=3e-05 Score=76.67 Aligned_cols=197 Identities=11% Similarity=0.057 Sum_probs=111.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC
Q 009470 259 VRGWCRAGNISEAERVFREMKMAGIQPN----------------VYTYSIVIDALCRCGQITRAHDVFAEMLEVG-CEPN 321 (534)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~ 321 (534)
.+.+.+.|++++|++.|.++.+...... ...+..+...|.+.|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567778888888888888877532211 1235667777778888888887777665431 1111
Q ss_pred HH----HHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CC
Q 009470 322 SI----TFNNLMRVHVKASRTEKVLQVYNQMKRL----GCEA-DTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GC 388 (534)
Q Consensus 322 ~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 388 (534)
.. ..+.+-..+...|+.+.|..++++.... +..+ -..++..+...|...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222222333456677777777665432 2122 2345566677777777777777777766543 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 389 NP-NASTFNMIFRCISKLGDVNGAHRMYGKMKDL----KCEPN--TVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 389 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
.+ ...++..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1345666666777777777777777665431 11111 23344455555666677777666665543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.3e-06 Score=64.29 Aligned_cols=97 Identities=8% Similarity=-0.029 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEP--NVNTYRILIT 470 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p--~~~~~~~li~ 470 (534)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 334444555555555555555555554432 1234445555555555555555555555555432 22 3444555555
Q ss_pred HHHhC-CCHHHHHHHHHHHHHc
Q 009470 471 MYCGM-GHWNNAYKYIREMIEE 491 (534)
Q Consensus 471 ~~~~~-g~~~~A~~~~~~~~~~ 491 (534)
.+.+. |++++|++.++++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-05 Score=63.82 Aligned_cols=98 Identities=9% Similarity=-0.055 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
+...|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34455555555555555555555555554432 22344455555555555555555555555444444445555555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMKM 280 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~ 280 (534)
+...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-05 Score=63.50 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILI 469 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li 469 (534)
.+...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 467788889999999999999999999988765 3367888899999999999999999999988864 45678888899
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009470 470 TMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
.++...|++++|+..|+++++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998874
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-05 Score=63.70 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=19.7
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
+.+.|++++|++.|++..+..|.+..+|+.+..+|.+.|++++|++.+++.
T Consensus 18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333333333333333333333444444444444444444444333
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-05 Score=66.66 Aligned_cols=98 Identities=8% Similarity=-0.026 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 009470 183 VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGW 262 (534)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 262 (534)
...|..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.....+.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455555566666666666666666665543 234555556666666666666666666665555555566666666666
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 009470 263 CRAGNISEAERVFREMKMA 281 (534)
Q Consensus 263 ~~~g~~~~A~~~~~~m~~~ 281 (534)
.+.|++++|.+.|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=9.6e-06 Score=64.78 Aligned_cols=95 Identities=6% Similarity=0.086 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-------HHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPD-------VIVYTN 257 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 257 (534)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++.....+.+ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555554432 2234444444555555555555555555443321111 444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+...+.+.|++++|.+.|++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.6e-06 Score=64.12 Aligned_cols=27 Identities=19% Similarity=0.017 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 009470 252 VIVYTNLVRGWCRA-GNISEAERVFREM 278 (534)
Q Consensus 252 ~~~~~~li~~~~~~-g~~~~A~~~~~~m 278 (534)
...+..+...+.+. |++++|.+.+++.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33333333333333 3444443333333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.8e-05 Score=75.96 Aligned_cols=197 Identities=11% Similarity=0.054 Sum_probs=121.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCC
Q 009470 294 IDALCRCGQITRAHDVFAEMLEVGCEPN----------------SITFNNLMRVHVKASRTEKVLQVYNQMKRLG-CEAD 356 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g-~~~~ 356 (534)
...+.+.|++++|++.|..+.+...... ...+..+...|.+.|++++|.+.+.++.+.- ...+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778899999998888887642211 1236667778888888888888887765431 1112
Q ss_pred h----hhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CC--
Q 009470 357 T----ITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GCNP-NASTFNMIFRCISKLGDVNGAHRMYGKMKDL--KC-- 423 (534)
Q Consensus 357 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-- 423 (534)
. .+.+.+...+...|++++|..++++.... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12223333344567788888877766542 2222 2456667777778888888888877776432 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 424 EP-NTVTYNILMQMFATSKSTDMVLKLKKEMEEN--EVEPN----VNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 424 ~p-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
.+ ...++..+++.|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1345677777777888888888877766532 11111 23455556666677788888777776654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=64.34 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 009470 220 AFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGI--QPN----VYTYSIV 293 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~~l 293 (534)
.+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...+++..+... .++ ...+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4455555666666666666666666555555566666666666666666666666666554321 111 4455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 009470 294 IDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 294 l~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
...+.+.|++++|.+.+++..+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55566666666666666665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.5e-05 Score=63.09 Aligned_cols=110 Identities=10% Similarity=-0.113 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 146 HSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEIT---VDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFS 222 (534)
Q Consensus 146 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 222 (534)
.+...+..+...+.+.|+++.|...|++..+... .+ ...|..+...|...|++++|++.+++..+.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666666777777777777777776665531 11 4556666666666666666666666665542 23445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 223 IVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
.+..++...|++++|.+.|++.....+.+...+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 55555666666666666666555444444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.2e-05 Score=63.87 Aligned_cols=93 Identities=5% Similarity=-0.163 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc
Q 009470 432 ILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRA 511 (534)
Q Consensus 432 ~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 511 (534)
.+...+.+.|++++|...+++..+.. +.+...|..+..++...|++++|+..|+++++.. +.+...+..+..++...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 34445555666666666666665542 3345555556666666666666666666666643 22445555566666666
Q ss_pred CCHHHHHHHHHHHHHc
Q 009470 512 GQLQKHEELVEKMVDR 527 (534)
Q Consensus 512 g~~~~a~~~~~~~~~~ 527 (534)
|++++|...++++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.8e-05 Score=62.91 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD----KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
+...+..+...+...|++++|++.|++..+.. |+ ...+..+...+...|++++|++.+++.....+.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 34444455555555555555555555554422 33 3444444445555555555555555544433444455555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 009470 258 LVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 258 li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+...+...|++++|.+.|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-05 Score=66.69 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CC---CCHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRMEEYGCA-PD----KIAFSIVISILCRKRRASEAQSFFDSLKDK---FE---PDVI 253 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~ 253 (534)
++..+...+...|++++|++.+++..+..-. .+ ..++..+...+...|++++|.+.+++.... .. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555555555555554332100 01 123344444444555555555554443221 00 0123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMA----GIQ-PNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
++..+...+...|++++|.+.+++..+. +.. .....+..+...+...|++++|.+.+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444555555555555555555544321 100 01223334444444455555555444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.9e-05 Score=62.73 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=34.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.....+.+...+..+...+.+.|++++|
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A 104 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3334444444444444433321 123333333333444444444444444443333333334444444444444444444
Q ss_pred HHHHHHHH
Q 009470 272 ERVFREMK 279 (534)
Q Consensus 272 ~~~~~~m~ 279 (534)
+..+++..
T Consensus 105 ~~~~~~al 112 (121)
T 1hxi_A 105 LASLRAWL 112 (121)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.7e-05 Score=65.91 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC----HH
Q 009470 429 TYNILMQMFATSKSTDMVLKLKKEMEEN----EVEP-NVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG----SS 499 (534)
Q Consensus 429 ~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~ 499 (534)
++..+...+...|++++|...+++..+. +-.+ ....+..+...+...|++++|.+.+++.++...-..+ ..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455555566666666666666555431 1000 1334556666777777777777777776643100111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 500 VYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 500 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
.+..+...+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556667777778888888887776653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.3e-05 Score=59.28 Aligned_cols=90 Identities=13% Similarity=-0.037 Sum_probs=39.1
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEITV---DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD---KIAFSIVISIL 228 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~ll~~~ 228 (534)
...+.+.|++++|...|+.+.+... .+. ..+..+...+.+.|++++|++.|++..+.. +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 3344444555555555554444321 111 344444444455555555555555444332 111 23344444444
Q ss_pred HhcCCHHHHHHHHHHhhc
Q 009470 229 CRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~ 246 (534)
...|++++|...|+++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 444444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.7e-05 Score=77.67 Aligned_cols=144 Identities=13% Similarity=-0.040 Sum_probs=85.9
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHH
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPN--------------ASTFNMIFRC 401 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~l~~~ 401 (534)
+++++|...|+...+.. +-....|..+...|.+.|++++|...|++..+...... ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34445554444332221 22456677788888888888888888888877532211 3566666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009470 402 ISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNA 481 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 481 (534)
+.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|++++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666544 2255666666666666666666666666666542 22344555555566666666555
Q ss_pred H
Q 009470 482 Y 482 (534)
Q Consensus 482 ~ 482 (534)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00016 Score=57.52 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---HHHHHHHHHH
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDK---IAFSIVISILCRKRRASEAQSFFDSLKDKFEPD---VIVYTNLVRG 261 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~li~~ 261 (534)
.+...+...|++++|++.|++..+.. +.+. ..+..+..++.+.|++++|...|+++....+.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 35556667777777777777766543 1122 355556666666777777777776665554444 5556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 009470 262 WCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~ 281 (534)
+.+.|++++|...|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66667777777666666654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.4e-06 Score=65.40 Aligned_cols=87 Identities=14% Similarity=0.060 Sum_probs=57.9
Q ss_pred cCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 009470 405 LGDVNGAHRMYGKMKDLK--CEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAY 482 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 482 (534)
.|++++|+..|++..+.+ -+-+...+..+...|...|++++|...+++..+.. +-+...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777777643 12234566677777777788888888777777653 445667777777777788888888
Q ss_pred HHHHHHHHcC
Q 009470 483 KYIREMIEEK 492 (534)
Q Consensus 483 ~~~~~~~~~~ 492 (534)
..+++.++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8887777753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.06 E-value=5.1e-05 Score=73.29 Aligned_cols=139 Identities=11% Similarity=0.029 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 009470 358 ITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMF 437 (534)
Q Consensus 358 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 437 (534)
..+..+...+.+.|++++|...|++..+.- +.. ......+ +..+.. ..+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 445666666667777777777776665420 000 0000011 110011 12456778888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 009470 438 ATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKH 517 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 517 (534)
.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999988764 4467788888889999999999999999998854 33566677777777777777776
Q ss_pred HH
Q 009470 518 EE 519 (534)
Q Consensus 518 ~~ 519 (534)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=5.8e-05 Score=63.28 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
+...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|+..|+++++. .|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---HPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---CCCCH
Confidence 34567778888888899999998888888764 556778888888899999999999999988884 45543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.03 E-value=7.9e-05 Score=74.31 Aligned_cols=122 Identities=11% Similarity=-0.004 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD---------------KIAFSIVISILCRKRRASEAQSFFDSLKDKF 248 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 248 (534)
..|..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..+++.....
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 445555555555555555555555554422 111 3555666666666666666666666665555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 249 EPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 249 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 307 (534)
+.+...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+.+++.
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666654211 3345555666666666665554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.4e-05 Score=78.46 Aligned_cols=117 Identities=12% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 009470 402 ISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNA 481 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 481 (534)
+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555566666555555442 2245555555666666666666666666655542 33455555566666666666666
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 009470 482 YKYIREMIEEKCLKPGSSVYEMVLQQ--LRRAGQLQKHEELVE 522 (534)
Q Consensus 482 ~~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 522 (534)
++.++++++..+ .+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666655431 122233333333 555566666665555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=63.36 Aligned_cols=82 Identities=7% Similarity=-0.057 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 009470 162 RQFDLAWHFIDLMKSRN--VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQS 239 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 239 (534)
|++++|...|++..+.+ -+.+...|..+...|...|++++|++.|++..+.. +-+..++..+..++...|++++|++
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444332 11223344444444444444444444444444332 1223334444444444444444444
Q ss_pred HHHHh
Q 009470 240 FFDSL 244 (534)
Q Consensus 240 ~~~~~ 244 (534)
.+++.
T Consensus 83 ~~~~a 87 (117)
T 3k9i_A 83 LLLKI 87 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.4e-05 Score=72.58 Aligned_cols=89 Identities=4% Similarity=-0.078 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 218 KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDAL 297 (534)
Q Consensus 218 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 297 (534)
..+|..+..+|.+.|++++|++.+++..+..+.+...|..+..+|...|++++|++.|++..+.... +...+..+...+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~ 351 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 3455555566666666666666666655555555666666666666666666666666666554211 344555555555
Q ss_pred HHcCCHHHHH
Q 009470 298 CRCGQITRAH 307 (534)
Q Consensus 298 ~~~g~~~~A~ 307 (534)
.+.++.+++.
T Consensus 352 ~~~~~~~~a~ 361 (370)
T 1ihg_A 352 QKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=79.69 Aligned_cols=118 Identities=10% Similarity=-0.061 Sum_probs=77.1
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 157 LAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASE 236 (534)
Q Consensus 157 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 236 (534)
.+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3456677777777777776664 3456777777777777777777777777777653 3456667777777777777777
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 009470 237 AQSFFDSLKDKFEPDVIVYTNLVRG--WCRAGNISEAERVFR 276 (534)
Q Consensus 237 A~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 276 (534)
|++.|++..+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777665544455555555555 666777777777776
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00034 Score=71.48 Aligned_cols=170 Identities=6% Similarity=-0.057 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC--C
Q 009470 200 AEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR----------ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG--N 267 (534)
Q Consensus 200 ~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~ 267 (534)
++|++.++++.+.. +-+..+|+.--.++...|+ ++++++.++++....+.+..+|+.-.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 45556666555543 2233444444444444444 666666666666656666666666666666666 5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----------
Q 009470 268 ISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG-QITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKA----------- 335 (534)
Q Consensus 268 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------- 335 (534)
++++++.++++.+.... +..+|+.....+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccccc
Confidence 57777777776665433 5566666665666666 6666777766666654 33566666655555442
Q ss_pred ---CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCh
Q 009470 336 ---SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKL 373 (534)
Q Consensus 336 ---g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 373 (534)
+.++++++.+++..... +-|...|..+...+.+.++.
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 34566777777666654 44566666666666555553
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0004 Score=70.98 Aligned_cols=175 Identities=5% Similarity=-0.064 Sum_probs=120.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009470 162 RQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGL----------AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRK 231 (534)
Q Consensus 162 ~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 231 (534)
..-++|++.++.+...+ +-+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|+.-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 33456677777777665 3455667666666666666 777777777777654 44566777766666777
Q ss_pred C--CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------
Q 009470 232 R--RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG-NISEAERVFREMKMAGIQPNVYTYSIVIDALCRC-------- 300 (534)
Q Consensus 232 g--~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------- 300 (534)
| +++++++.++++.+..+.+..+|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 7 5677777777777766777777777777777777 777777777777766443 666676666655553
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 009470 301 ------GQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEK 340 (534)
Q Consensus 301 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 340 (534)
+.++++++.+++.+... +-|...|+..-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998888775 4467788877777766666443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00015 Score=60.62 Aligned_cols=97 Identities=10% Similarity=-0.001 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEY-------GC----------APDKIAFSIVISILCRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 246 (534)
..+......+.+.|++++|++.|++..+. +- +.+...|..+..++.+.|++++|+..+++...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44555666666777777777777666543 00 01123344444444445555555555444444
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 247 KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 247 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
..+.+...|..+..+|...|++++|...|++..+
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3344444445555555555555555555544444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.93 E-value=3e-05 Score=74.02 Aligned_cols=149 Identities=12% Similarity=0.046 Sum_probs=84.7
Q ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 009470 357 TITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQM 436 (534)
Q Consensus 357 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 436 (534)
...+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5667778888889999999999999988753 33321 223333344332221 1367788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHH-HHHcCCH
Q 009470 437 FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSVYEMVLQQ-LRRAGQL 514 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~ 514 (534)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|+++++. .|+ ...+..+... ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888753 456788888889999999999999999988874 344 3344444444 2345667
Q ss_pred HHHHHHHHHHHHcC
Q 009470 515 QKHEELVEKMVDRG 528 (534)
Q Consensus 515 ~~a~~~~~~~~~~g 528 (534)
+++..++.+|....
T Consensus 316 ~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 316 QKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhCCC
Confidence 78888888887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0002 Score=58.94 Aligned_cols=97 Identities=12% Similarity=0.052 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP------NT-----VTYNILMQMFATSKSTDMVLKLKKEMEEN-----E 457 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~ 457 (534)
.+......+.+.|++++|++.|++..+..... +. ..|..+..++.+.|++++|+..+++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666665542110 11 14444444455555555555555444442 0
Q ss_pred CCCC-HHHH----HHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 458 VEPN-VNTY----RILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 458 ~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+.|+ ...| .....++...|++++|+..|++.++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1222 2233 4444444444444444444444444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00056 Score=55.46 Aligned_cols=111 Identities=10% Similarity=-0.014 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 009470 371 GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMV 446 (534)
Q Consensus 371 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 446 (534)
+++++|.+.|++..+.|. +... +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 355666666666666552 2222 4455555555666666666666543 45555555555555 5566666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~ 492 (534)
.+++++..+.| +...+..|...|.. .+++++|+++|++..+.+
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666554 34455555555555 556666666666665543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00035 Score=57.45 Aligned_cols=94 Identities=17% Similarity=0.039 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHhhcc---
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD--------K-----IAFSIVISILCRKRRASEAQSFFDSLKDK--- 247 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--- 247 (534)
..+......+.+.|++++|++.|++..+.. |+ . ..|..+..++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 344555666667777777777777766542 22 1 14444444444444444444444443332
Q ss_pred ----CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 248 ----FEPDVIVY----TNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 248 ----~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
.+.+...| .....++...|++++|+..|++..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334444 444555555555555555555443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.001 Score=53.83 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=48.0
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 009470 337 RTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISK----LGDVNGAH 412 (534)
Q Consensus 337 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 412 (534)
++++|.++|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444444444444443 12211 3333444444444444444444442 33444444444444 44444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 009470 413 RMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENE 457 (534)
Q Consensus 413 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~ 457 (534)
++|++..+.| +...+..|...|.. .++.++|.+++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 4444444432 33444444444444 444444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00011 Score=57.28 Aligned_cols=80 Identities=13% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 009470 410 GAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMI 489 (534)
Q Consensus 410 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 489 (534)
.|.+.|++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666544 2356677777777777777777777777777653 4456677777777777788888888777776
Q ss_pred Hc
Q 009470 490 EE 491 (534)
Q Consensus 490 ~~ 491 (534)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 63
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=70.17 Aligned_cols=147 Identities=10% Similarity=-0.016 Sum_probs=67.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.+..+...+.+.|+++.|...|++..... ++.. .+...|+.+++...+. ...|..+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45555666666777777777776655542 1111 0111222222221110 125666777777
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDA-LCRCGQITRAHD 308 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~ 308 (534)
+.|++++|+..+++.....+.+...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777776666667777777777777778888887777777653211 23334444333 233456667777
Q ss_pred HHHHHHHc
Q 009470 309 VFAEMLEV 316 (534)
Q Consensus 309 ~~~~m~~~ 316 (534)
.|..|...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77777654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00018 Score=71.88 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=77.1
Q ss_pred HHhcCChhHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHH
Q 009470 402 ISKLGDVNGAHRMYGKMKDL---KCEP----NTVTYNILMQMFATSKSTDMVLKLKKEMEEN-----E-VEP-NVNTYRI 467 (534)
Q Consensus 402 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~-~~p-~~~~~~~ 467 (534)
+...|++++|+.++++..+. -..+ ...+++.|...|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777766431 1111 2345677777777777877777777765431 2 112 2356777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcC--CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 468 LITMYCGMGHWNNAYKYIREMIEEK--CLKPGS----SVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 468 li~~~~~~g~~~~A~~~~~~~~~~~--~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
|...|...|++++|..+++++++.. -+-|+. .+...+..++...|.+++|+.++.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888887777765411 011222 23344555666777788888888777663
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=72.27 Aligned_cols=123 Identities=14% Similarity=-0.015 Sum_probs=63.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcC---CC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----C--CCCChhhHHH
Q 009470 297 LCRCGQITRAHDVFAEMLEVG---CE---P-NSITFNNLMRVHVKASRTEKVLQVYNQMKRL-----G--CEADTITYNF 362 (534)
Q Consensus 297 ~~~~g~~~~A~~~~~~m~~~~---~~---~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----g--~~~~~~~~~~ 362 (534)
+...|++++|+.++++..+.. +. | ...+++.+..+|...|++++|..++++..+. | .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777776655421 11 1 2345666666677777777776666655432 1 1111344555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRK-----GCN-PN-ASTFNMIFRCISKLGDVNGAHRMYGKMK 419 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 419 (534)
|...|...|++++|..++++..+. |.. |+ ..+.+.+..++...+.+++|+.+|.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666554431 211 11 1223344444445555555555555554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.65 E-value=7.6e-05 Score=57.62 Aligned_cols=92 Identities=12% Similarity=-0.052 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPD-------KIA 220 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~~ 220 (534)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|++.+++..+.. |+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 4456666667777777777777777766654 3456667777777777777777777777766542 33 333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 009470 221 FSIVISILCRKRRASEAQSFFD 242 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~ 242 (534)
+..+..++...|+.+.|.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 4444444444444444443333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00045 Score=53.78 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 445 MVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 445 ~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
+|...+++..+.. +.+...+..+...|...|++++|++.++++++.. +.+...|..+..++...|++++|...++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677888887764 5578889999999999999999999999999965 456778899999999999999999999998
Q ss_pred HHc
Q 009470 525 VDR 527 (534)
Q Consensus 525 ~~~ 527 (534)
++.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=4.8e-05 Score=58.79 Aligned_cols=65 Identities=14% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFE 249 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 249 (534)
..|..+...+...|++++|++.|++..+.. +.+...+..+..++.+.|++++|++.+++.....+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 445555555566666666666666555432 23445555555555555555555555555544433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00095 Score=49.01 Aligned_cols=82 Identities=12% Similarity=0.178 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 427 TVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|++.++++++.. +.+...+..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 4556667777777888888888887777653 4456677777788888888888888888887753 334555666665
Q ss_pred HHHHc
Q 009470 507 QLRRA 511 (534)
Q Consensus 507 ~~~~~ 511 (534)
.+.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00083 Score=49.36 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009470 186 FSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLV 259 (534)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 259 (534)
+..+...+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|.+.+++.....+.+...+..+.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 3334444444444444444444443322 122333333444444444444444444443333333333333333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00019 Score=58.98 Aligned_cols=111 Identities=8% Similarity=0.065 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-
Q 009470 407 DVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS----------TDMVLKLKKEMEENEVEPNVNTYRILITMYCGM- 475 (534)
Q Consensus 407 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~- 475 (534)
.+++|.+.+++..+.. +-+...|..+..++...++ +++|+..+++..+.. +-+...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhc
Confidence 3444444444444433 1244444444444444433 456777777766643 33456666777777655
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 476 ----------GHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRG 528 (534)
Q Consensus 476 ----------g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 528 (534)
|++++|++.|+++++ +.|+...|...+... ++|.+++-.+...|
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al~~~------~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMT------AKAPQLHAEAYKQG 148 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHH------HhCHhccCcccccc
Confidence 489999999999998 568877766555433 34555555444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00047 Score=52.25 Aligned_cols=64 Identities=23% Similarity=0.231 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
+...+..+...|...|++++|+..+++..+.. +.+...|..+..+|...|++++|++.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666667777777777777777766643 33455666677777777777777777776665
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0014 Score=49.49 Aligned_cols=67 Identities=10% Similarity=0.026 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+-+...+..+...|.+.|++++|++.|+++++.. +.+...|..+..+|...|++++|.+.+++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3467788899999999999999999999999975 345678999999999999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00073 Score=55.42 Aligned_cols=83 Identities=12% Similarity=-0.013 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 009470 233 RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN----------ISEAERVFREMKMAGIQPNVYTYSIVIDALCRC-- 300 (534)
Q Consensus 233 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-- 300 (534)
.+++|.+.++...+..+.+...|+.+..++...++ +++|+..|++.++.... +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcc
Confidence 34444444444444344444444444444444433 33555555555543222 344455555555544
Q ss_pred ---------CCHHHHHHHHHHHHHc
Q 009470 301 ---------GQITRAHDVFAEMLEV 316 (534)
Q Consensus 301 ---------g~~~~A~~~~~~m~~~ 316 (534)
|++++|++.|++.++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHh
Confidence 3566666666666555
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0076 Score=64.63 Aligned_cols=153 Identities=9% Similarity=0.008 Sum_probs=91.9
Q ss_pred HHHHccCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009470 156 NLAGKVRQFDLAWH-FIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234 (534)
Q Consensus 156 ~~~~~~~~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 234 (534)
......++++.|.+ ++..+. +......++..+.+.|.+++|+++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445678888766 442211 02234677777888888888887653211 112344567888
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 235 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
++|.++.+.+. +...|..+...+.+.|+++.|++.|.++.+ |..+...|...|+.+...++.+...
T Consensus 669 ~~A~~~~~~~~-----~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 669 TLARDLLTDES-----AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHHTTCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 88888765543 567888888888888888888888887752 3344555555666666555555544
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 315 EVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
..|. ++....+|.+.|++++|.+++.
T Consensus 735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 735 TTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 4431 2223334445555555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.022 Score=61.07 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD 370 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 370 (534)
..++..+.+.|..++|+++.++.. .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555555666666554442111 0012234456666665554322 2445566666666666
Q ss_pred CChHHHHHHHHHH
Q 009470 371 GKLEDAIKVLNSM 383 (534)
Q Consensus 371 g~~~~A~~~~~~m 383 (534)
|+++.|.+.|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.016 Score=54.51 Aligned_cols=74 Identities=18% Similarity=0.121 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 009470 424 EPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYE 502 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~ 502 (534)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 4577788887777777799999999999998864 7877787888888899999999999999988 457777654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.022 Score=53.69 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 009470 248 FEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITF 325 (534)
Q Consensus 248 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 325 (534)
.+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 35566666666666666677777777777776654 56666666666666777777777777766665 3444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0052 Score=60.18 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=57.3
Q ss_pred hcCChhHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 009470 404 KLGDVNGAHRMYGKMKDL---KCEPN----TVTYNILMQMFATSKSTDMVLKLKKEMEEN-----E-VEPN-VNTYRILI 469 (534)
Q Consensus 404 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~-~~p~-~~~~~~li 469 (534)
..|++++|+.++++..+. -..|+ ..+++.|..+|...|++++|..++++..+- | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567778888887776541 11122 356777777788888888888877776431 2 1222 34577777
Q ss_pred HHHHhCCCHHHHHHHHHHHHH
Q 009470 470 TMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~ 490 (534)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777788888888887777776
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0057 Score=45.67 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 185 TFSILVRRYVRAGLAAEAVHAFNRME 210 (534)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (534)
.|..+...|...|++++|++.|++..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333334444444444443333
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.22 Score=41.39 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=72.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
-++...+.|+++.|+++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 345566788999998887765 2457888899998899999888888887754 3355556666777
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
.+...++-+....+. -++.....+.-.|+++++.++|.+.
T Consensus 76 ~e~L~kla~iA~~~g-----~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE-----DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHTT-----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc-----cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 776665544433221 2455556666778888887777543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.015 Score=43.29 Aligned_cols=52 Identities=8% Similarity=0.050 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 229 CRKRRASEAQSFFDSLKDKFEPDVI-VYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 229 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
.+.|++++|.+.|++..+..+.+.. .|..+..++...|++++|.+.|++..+
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444333333333 444444444444444444444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0083 Score=58.74 Aligned_cols=62 Identities=6% Similarity=-0.069 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 288 YTYSIVIDALCRCGQITRAHDVFAEMLEV-----G-CEPN-SITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 288 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
.+++.|...|...|++++|+.++++.++. | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34555555555555555555555554321 1 0111 2345555555555555555555555443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.42 Score=43.20 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChh
Q 009470 339 EKVLQVYNQMKRLGCEAD---TITYNFLIDCHCKD-----GKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKL-GDVN 409 (534)
Q Consensus 339 ~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-g~~~ 409 (534)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4566666666665 344 55677777777773 78888888888877765332366666677777764 7778
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHH
Q 009470 410 GAHRMYGKMKDLKCE--PNTVTYNIL 433 (534)
Q Consensus 410 ~A~~~~~~m~~~~~~--p~~~~~~~l 433 (534)
++.+.+++....... |+....+.+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888877776555 555444433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.43 E-value=1.3 Score=47.23 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhc
Q 009470 221 FSIVISILCRKRRASEAQSFFDSLKD 246 (534)
Q Consensus 221 ~~~ll~~~~~~g~~~~A~~~~~~~~~ 246 (534)
|..+++++.+.++.+.+.++|+.+.+
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55566677778888888888888653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.021 Score=55.98 Aligned_cols=90 Identities=7% Similarity=0.028 Sum_probs=53.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHH
Q 009470 261 GWCRAGNISEAERVFREMKMAG---IQPN----VYTYSIVIDALCRCGQITRAHDVFAEMLEV-----G-CEP-NSITFN 326 (534)
Q Consensus 261 ~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~-~~~-~~~~~~ 326 (534)
.+.+.|++++|+.++++..+.. ..++ ..+++.+...|...|++++|+.++++.++. | -.| ...+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777665421 1111 345666777777777777777777665432 2 112 234566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 009470 327 NLMRVHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 327 ~li~~~~~~g~~~~a~~~~~~~~~ 350 (534)
.+...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777777777777777766543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.031 Score=54.72 Aligned_cols=89 Identities=10% Similarity=-0.029 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHhhcc----CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDK----FE----PDVIVYTNLVRGWCRAGNISEAERVFREMKMA-----GI-QPN-VYTYS 291 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~----~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~~~~ 291 (534)
.+.+.|++++|+.++++..+. +. ....+++.++..|...|++++|+.++++..+. |. .|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666654321 11 12345666667777777777777766665431 21 122 34566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 292 IVIDALCRCGQITRAHDVFAEMLE 315 (534)
Q Consensus 292 ~ll~~~~~~g~~~~A~~~~~~m~~ 315 (534)
.|...|...|++++|+.++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 677777777777777777766543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.043 Score=40.55 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 009470 424 EPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 492 (534)
+.|...+..+..++...++ .++|..++++..+.. +-+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3567777788887765544 689999999988864 5567778888888899999999999999998864
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.046 Score=44.25 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHH
Q 009470 408 VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSK---STDMVLKLKKEMEENEVEP--NVNTYRILITMYCGMGHWNNAY 482 (534)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 482 (534)
...+.+.|.+..+.+. ++..+...+..++++.+ ++++++.++++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666776666554 67778778888888877 6668888888887764 24 3455556666788999999999
Q ss_pred HHHHHHHHcCCCCCCHH
Q 009470 483 KYIREMIEEKCLKPGSS 499 (534)
Q Consensus 483 ~~~~~~~~~~~~~p~~~ 499 (534)
++++.+++ +.|+..
T Consensus 92 ~y~~~lL~---ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQ---TEPQNN 105 (152)
T ss_dssp HHHHHHHH---HCTTCH
T ss_pred HHHHHHHh---cCCCCH
Confidence 99999988 457553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.09 Score=38.76 Aligned_cols=66 Identities=8% Similarity=-0.007 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 390 PNASTFNMIFRCISKLGD---VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEEN 456 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 456 (534)
.+...+..+..++...++ .++|..++++..+... -+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666777776654444 5788888888877652 36677777777788888888888888888775
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.34 Score=37.82 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 009470 462 VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDRGF 529 (534)
Q Consensus 462 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 529 (534)
....+..+..+...|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.++|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455555566666666666666654332 245666666666666666666666666666666654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.35 Score=37.74 Aligned_cols=137 Identities=12% Similarity=0.090 Sum_probs=65.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 009470 195 RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERV 274 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 274 (534)
-.|..++..++..+.... -+..-||-+|--....-+-+...+.++.+-.-+.- ...|++......
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi------------s~C~NlKrVi~C 83 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL------------DKCQNLKSVVEC 83 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG------------GGCSCTHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc------------HhhhcHHHHHHH
Confidence 345566666666665542 24445555555555555555555555554432211 122333333333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 275 FREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 275 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
+-.+- .+.......++.+...|+-++-.+++.++... .+|+....-.+..+|.+.|+..++.+++.+..+.|
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 22221 12233344445555555555555555554322 14455555555555556666655655555555555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.18 Score=41.87 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 307 (534)
....|+++.|.++.+.+. +...|..|.....+.|+++-|++.|.+..+ +..+.-.|.-.|+.+...
T Consensus 15 AL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 345566666666655542 455566666666666666666666655532 233333444555555554
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 308 DVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 308 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
++-+.....| . ++.....+.-.|+++++.++|.
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444333 1 2333334444555555555553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.1 Score=39.36 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRN------VEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
++..+..+...+.+.|+++.|...|+...+.. -......+..+..++.+.|++++|+..+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444555555555555555554443320 012234444444444444444444444444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.12 Score=38.93 Aligned_cols=66 Identities=11% Similarity=-0.020 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENE------VEPNVNTYRILITMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
+..-+..+...+.+.|+++.|...+++..+.. -......+..+..++.+.|++++|+.+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445566666777777777777776665420 1234567777888888888888888888888773
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.51 E-value=2.4 Score=45.09 Aligned_cols=152 Identities=9% Similarity=0.048 Sum_probs=64.8
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH--HHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCC
Q 009470 332 HVKASRTEKVLQVYNQMKRLGCEADTITYNFLI--DCHCKDGKLEDAIKVLNSMVRKGCNPNASTF--NMIFRCISKLGD 407 (534)
Q Consensus 332 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~g~ 407 (534)
++..|+.+....++..+.+. .+..+...+. -++...|+.+.+..+++.+.... .|....- .++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 33445555555555555442 1222222222 23335566666666666655431 1111111 122334555566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHH
Q 009470 408 VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHW-NNAYKYIR 486 (534)
Q Consensus 408 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~ 486 (534)
.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+|++.+.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 555555666655421 1122222222233344455555555555444432 23222222222233333332 45555555
Q ss_pred HHH
Q 009470 487 EMI 489 (534)
Q Consensus 487 ~~~ 489 (534)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=95.40 E-value=1.7 Score=40.25 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAF----NRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~~~~~~~~l 224 (534)
..|.++..-|.+.+++++|.+++-. -...+.+.|+...|.++- +-+.+.++++|......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~---------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS---------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4677777778888999988887654 233445556665555543 444566777887777777
Q ss_pred HHHHHhcCCHH--------HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 225 ISILCRKRRAS--------EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVF 275 (534)
Q Consensus 225 l~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 275 (534)
+..+.....-+ +|+++-.+....-..|......+...|.+.+++.+|+..|
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 76665543211 1222211111112346667777777777777777777666
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.16 Score=41.08 Aligned_cols=67 Identities=10% Similarity=0.028 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 249 EPDVIVYTNLVRGWCRAG---NISEAERVFREMKMAGIQP--NVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 249 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
+++..+...+.-++++.+ ++++++.++++..+.+ .| ....+..+.-+|.+.|++++|.+.++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345555555555555555 3445555555555432 12 2333334444555555555555555555554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.33 Score=43.87 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHCCC
Q 009470 336 SRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKD-GKLEDAIKVLNSMVRKGC 388 (534)
Q Consensus 336 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~ 388 (534)
|+.++|.+.|++..+.+-.-+..++......++.. |+.++|.+.+++......
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 45555555555554442111244444444444442 555555555555554433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.7 Score=36.94 Aligned_cols=102 Identities=14% Similarity=0.031 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHcCCCCChh-hHHHHHHH------HHHcCChHHHHHHHHHHHHCC
Q 009470 321 NSITFNNLMRVHVKASRT------EKVLQVYNQMKRLGCEADTI-TYNFLIDC------HCKDGKLEDAIKVLNSMVRKG 387 (534)
Q Consensus 321 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~g~~~~~~-~~~~li~~------~~~~g~~~~A~~~~~~m~~~~ 387 (534)
|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .+...|.. +...+++++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555666 5666666666553 233321 11111111 122356666777776665542
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 009470 388 CNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCE 424 (534)
Q Consensus 388 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 424 (534)
-+. ...|....+.-.+.|++..|.+++.+....+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 555555566666667777777777766665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.47 Score=37.95 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 439 TSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 439 ~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
..++.++|.++|+.+.+.+-.- ...|-...+.-.+.|+.+.|.+++.+.+..+ .-+...+...+..+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~--~k~~~~le~a~~nl 138 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG--AVPLEMLEIALRNL 138 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CBCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC--CCcHHHHHHHHHhh
Confidence 3478888888888886542222 6677777777778888888888888888865 22344444444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.0032 Score=60.68 Aligned_cols=347 Identities=12% Similarity=0.161 Sum_probs=191.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 147 SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 147 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
++..|..+|....+.|.+++-...+...++....+ ..=+.|+-+|++.|+..+-.+.+ -.|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 44567777777778888888777776555543222 33356777777777754433322 2355555566666
Q ss_pred HHHhcCCHHHHHHHHHHhhc---------------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 227 ILCRKRRASEAQSFFDSLKD---------------------KFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~---------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
-|...|.++.|.-+|..+.. +-..++.||..+-.+|...+.+.-|.-.--.++-. +
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 77777777777666654421 01236778888888999888887765554444321 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CC------CCChh
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL-GC------EADTI 358 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-g~------~~~~~ 358 (534)
| -...++..|-+.|.+++.+.+++.-.... ......|+.|.-.|++- +.++..+-++..-.+ ++ .....
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 12235566888899999888888776432 34566777777666654 455555544433221 11 12456
Q ss_pred hHHHHHHHHHHcCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHHh---------------cCChhH
Q 009470 359 TYNFLIDCHCKDGKLEDAIKVL-------------NSMVRKGCNPNASTFNMIFRCISK---------------LGDVNG 410 (534)
Q Consensus 359 ~~~~li~~~~~~g~~~~A~~~~-------------~~m~~~~~~~~~~~~~~l~~~~~~---------------~g~~~~ 410 (534)
.|.-++-.|++-.+++.|.... .++..+ ..+...|...+..|.. .=|...
T Consensus 306 LW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~R 383 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTR 383 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTT
T ss_pred hHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHH
Confidence 6888888888888888765432 111111 2355555555554443 334444
Q ss_pred HHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCHHHHH------------HHHHHHHHCCCCCCHHHHHHH
Q 009470 411 AHRMYGKMKDL----------KCEPNTVTYNILMQMFATSKSTDMVL------------KLKKEMEENEVEPNVNTYRIL 468 (534)
Q Consensus 411 A~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~a~------------~l~~~m~~~~~~p~~~~~~~l 468 (534)
+.++|++.-.. .-..+...=.++-+.|....+++.-. .+-+++.++ .-...-..-
T Consensus 384 vV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIA 460 (624)
T 3lvg_A 384 AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIA 460 (624)
T ss_dssp THHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHH
Confidence 45554432110 00112333345555666666665432 233333332 122333334
Q ss_pred HHHHHhCCCHHHHHHHH------HHHHHcCCCCCCHHHHHHHHHHHHHcCCH
Q 009470 469 ITMYCGMGHWNNAYKYI------REMIEEKCLKPGSSVYEMVLQQLRRAGQL 514 (534)
Q Consensus 469 i~~~~~~g~~~~A~~~~------~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 514 (534)
...|.++++|++++.+. +++++.....-+......|++.+...|+.
T Consensus 461 A~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv~~g~~ 512 (624)
T 3lvg_A 461 AYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKR 512 (624)
T ss_dssp HHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCST
T ss_pred HHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCch
Confidence 44667777888776543 33333222233444455555555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.7 Score=35.86 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=58.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHH
Q 009470 406 GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM---VLKLKKEMEENEVEP--NVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 406 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~l~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~ 480 (534)
..+..+.+.|.+....|. ++..+--.+..++.+.++... ++.+++++...+ .| .....-.+.-++.+.|+|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555666665555443 567776677777777776655 777777776653 22 23344455667888999999
Q ss_pred HHHHHHHHHHcCCCCCCH
Q 009470 481 AYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 481 A~~~~~~~~~~~~~~p~~ 498 (534)
|.++++.+++. .|+.
T Consensus 93 A~~~~~~lL~~---eP~n 107 (126)
T 1nzn_A 93 ALKYVRGLLQT---EPQN 107 (126)
T ss_dssp HHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHHh---CCCC
Confidence 99999988884 5654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.83 Score=47.59 Aligned_cols=130 Identities=10% Similarity=0.077 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc------CCCC-CH-
Q 009470 149 DLYHEMINLAGKVRQ-FDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEY------GCAP-DK- 218 (534)
Q Consensus 149 ~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~~-~~- 218 (534)
.....++..+...++ .+.|..+|+++.+.....+......++..+.+.+ +--+|++++.+..+. ..++ +.
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 455666677776666 5889999999988753333322333333333333 233556655554321 1111 11
Q ss_pred ---------HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 219 ---------IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 219 ---------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
..+..=...+...|+++.|+++-++...-.|.+-.+|..|+.+|.+.|+++.|+-.++-+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122222445667899999999999988878888999999999999999999999888876
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.33 E-value=4.8 Score=36.91 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA----FNRMEEYGCAPDKIAFSIV 224 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~~~~~~~~l 224 (534)
..|..+..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-+.+.+++++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~---------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ---------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4677777778888888888887754 23344556666655554 4445566778887777777
Q ss_pred HHHHHhcCC--------HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009470 225 ISILCRKRR--------ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFR 276 (534)
Q Consensus 225 l~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 276 (534)
+..+..... .++|+++-.+....-..|+.....+...|.+.|++.+|+..|-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 766654321 1122222222211123477888888888888888888877664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.04 E-value=3.1 Score=46.25 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 251 DVIVYTNLVRGWCRAGNISEAERVFREM 278 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 278 (534)
+......+..+|...|++++|.+.|.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444445556666666666666666543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.59 Score=48.67 Aligned_cols=52 Identities=10% Similarity=0.010 Sum_probs=27.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 471 MYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 471 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
.|...|+++-|+++-++++... +-+..+|..|..+|...|+++.|+-.++-+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3444555555555555555532 333455555555555555555555555443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.77 E-value=5.8 Score=36.36 Aligned_cols=179 Identities=9% Similarity=0.049 Sum_probs=92.9
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAH 307 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 307 (534)
-...|++-+|.+.++. +..=|.+.+++++|++++..-.. .+.+.|+...|-
T Consensus 23 ~I~~G~yYEAhQ~~Rt--------------l~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~ 73 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLRT--------------IANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGT 73 (312)
T ss_dssp HHHHTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHH
T ss_pred HhhccChHHHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHH
Confidence 3455666666665443 33446666777777766544321 233445544444
Q ss_pred HH----HHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHH----HcC--CCCChhhHHHHHHHHHHcCChHHH
Q 009470 308 DV----FAEMLEVGCEPNSITFNNLMRVHVKASRTE-KVLQVYNQMK----RLG--CEADTITYNFLIDCHCKDGKLEDA 376 (534)
Q Consensus 308 ~~----~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A 376 (534)
++ ++-..+.+.+++......++..+......+ .-.++++++. +.| -.-|+.....+...|.+.|++.+|
T Consensus 74 DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 74 DLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 43 333444566666666666666554432211 1122333332 222 124667788888888999999888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009470 377 IKVLNSMVRKGCNPNASTFNMIFRCISKL---GDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEM 453 (534)
Q Consensus 377 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m 453 (534)
...|-.-. .-+...+..++.-+.+. |...++ |...-..++. |.-.|+...|..+++..
T Consensus 154 ~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f 214 (312)
T 2wpv_A 154 ERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIF 214 (312)
T ss_dssp HHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHH
T ss_pred HHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHH
Confidence 87765211 11344444444433332 332221 1122222333 44568888888888776
Q ss_pred H
Q 009470 454 E 454 (534)
Q Consensus 454 ~ 454 (534)
.
T Consensus 215 ~ 215 (312)
T 2wpv_A 215 L 215 (312)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.73 E-value=2 Score=47.72 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 009470 188 ILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDK 247 (534)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 247 (534)
.++..+.+.|.++-+.++.... +-+....-.+..++...|++++|.+.|++...+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~ 871 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV 871 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 3555566667766665544332 335554456677888999999999999986543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.50 E-value=0.7 Score=35.86 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=11.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
|.-++.+.|++++|.+.++.+.+.
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444555555555555544443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.27 E-value=0.69 Score=33.93 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 199 AAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 199 ~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
.-+..+.++.+....+.|++.+....+++|-+.+++..|.++|+.++.+......+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 34555566666666667777777777777777777777777777776655444445555443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.57 E-value=11 Score=36.78 Aligned_cols=51 Identities=4% Similarity=0.087 Sum_probs=35.9
Q ss_pred cCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 161 VRQFDLAWHFIDLMKSR-----NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 161 ~~~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
.|+++.|.+.+-.+.+. +..-+......++..|...|+++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 36788888777655532 2334567788888888888888888777766643
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.81 Score=43.92 Aligned_cols=76 Identities=12% Similarity=0.107 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCCCHHHHHH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIE----EKCLKPGSSVYEM 503 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~~~~~ 503 (534)
.+...++..+...|+++++...+..+.... +.+...|..++.++.+.|+..+|++.|+++.+ +-|+.|...+-..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 344556677777888888888777776653 56777888888888888888888888877543 2247777765443
Q ss_pred H
Q 009470 504 V 504 (534)
Q Consensus 504 l 504 (534)
.
T Consensus 251 ~ 251 (388)
T 2ff4_A 251 N 251 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.02 E-value=12 Score=36.40 Aligned_cols=173 Identities=8% Similarity=0.113 Sum_probs=85.9
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCCHHHH--HHHHHHHHH--c
Q 009470 141 RPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYV----RAGLAAEA--VHAFNRMEE--Y 212 (534)
Q Consensus 141 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~A--~~~~~~m~~--~ 212 (534)
......+......++..+.+.|+++...+.+..+.+.... .......+++.+. .....+.. +.+.+.+.. .
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte 127 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTE 127 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSS
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhc
Confidence 3445667889999999999999999998888766554211 2233334443322 22222211 111111110 0
Q ss_pred C-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 009470 213 G-CAP---DKIAFSIVISILCRKRRASEAQSFFDSLKDK-FEP-D----VIVYTNLVRGWCRAGNISEAERVFREMKM-- 280 (534)
Q Consensus 213 g-~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 280 (534)
| +-. .......|...+...|++.+|.+++..+... ... + ...+...++.|...+++..|..++.++..
T Consensus 128 ~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~ 207 (445)
T 4b4t_P 128 NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT 207 (445)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 1 000 1112234555666666666666666665321 100 1 23445555666666666666666655431
Q ss_pred --CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 281 --AGIQPN--VYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 281 --~g~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
....|+ ...|...+..+...+++.+|.+.|.+..
T Consensus 208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111111 1233444455555666666655555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.57 E-value=1.1 Score=43.00 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 009470 255 YTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLE-----VGCEPNSITFN 326 (534)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 326 (534)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445566666777777776666665542 33566677777777777777777777666532 36666665543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.60 E-value=2.3 Score=33.07 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 009470 201 EAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLV 259 (534)
Q Consensus 201 ~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 259 (534)
+..+.++.+....+.|++.+....+++|-+.+++..|.++|+-++.+..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34455555555556666666666666666666666666666666655444444455444
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=20 Score=36.42 Aligned_cols=22 Identities=9% Similarity=-0.006 Sum_probs=16.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 009470 505 LQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 505 ~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
+..+...|....|...+..+.+
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCChhhHHHHHHHHHh
Confidence 4567788988888888877665
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.25 E-value=7.8e-06 Score=78.28 Aligned_cols=262 Identities=12% Similarity=0.123 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
..|..|..+..+.++..+|++-|-+.. |+..|..++....+.|.+++-.+++...++..- +...=+.|+-+|+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~-----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS-----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC-----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 345556666666665555554332221 455566666666666666666666655544322 2222335666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHH
Q 009470 299 RCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIK 378 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 378 (534)
+.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+.. |.-|..++.+.|++..|.+
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTT
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHH
Confidence 6666554333221 24444445555666666666666555543322 2334444556666665544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 009470 379 VLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEV 458 (534)
Q Consensus 379 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 458 (534)
.-++ .-++.||..+-.+|...+++.-|.-.--.++-. +| -...++..|-..|.+++.+.+++.-....
T Consensus 192 aArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE- 259 (624)
T 3lvg_A 192 GARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE- 259 (624)
T ss_dssp TTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred HHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 3222 136678888888999988888776655444421 11 12346677888999999999998877543
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 459 EPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEK 523 (534)
Q Consensus 459 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 523 (534)
.....+|+-|.-.|++- +.++-++.++..-.+ .| .-.++++|.+..-|.++.-++..
T Consensus 260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sr----iN---ipKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSR----VN---IPKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSS----SC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh----cc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence 55677888888878775 556666655543322 11 22478899998888888776654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.47 E-value=1.7 Score=35.39 Aligned_cols=27 Identities=7% Similarity=-0.036 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 498 SSVYEMVLQQLRRAGQLQKHEELVEKM 524 (534)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 524 (534)
.+.-..+..+|.+.|++++|..+++.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 345555778889999999999988765
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.27 E-value=6.7 Score=30.56 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 423 CEPNTVTYNILMQMFATSKST---DMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 423 ~~p~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
-.|+..+--.+..++.+..+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~---~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hCCCCH
Confidence 356666666677777776654 45777777777654212345555666688888888888888888887 456654
Q ss_pred H
Q 009470 500 V 500 (534)
Q Consensus 500 ~ 500 (534)
-
T Consensus 113 Q 113 (134)
T 3o48_A 113 Q 113 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.93 E-value=6.3 Score=28.94 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|+++|+-...+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344555666666666677777777777777777777777777777766654 233445665554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.34 E-value=8.9 Score=34.05 Aligned_cols=55 Identities=11% Similarity=-0.074 Sum_probs=39.7
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 157 LAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEY 212 (534)
Q Consensus 157 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 212 (534)
.+.+.|++++|+.....-.+.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456777777777777666665 567777777888888888888887777766653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.25 E-value=12 Score=29.50 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 424 EPNTVTYNILMQMFATSKST---DMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g~~---~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
.|+..+--.+..++.+..+. .+++.+++++...+..-.....-.+.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---TCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCCCcH
Confidence 56777766777777777654 46777888777643222334445556688899999999999999888 457653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.94 E-value=36 Score=34.62 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=52.8
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 009470 140 ARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI 219 (534)
Q Consensus 140 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 219 (534)
+.++.+.....-+.-+..+++.+++.....++.. .+.+...-.....+....|+..+|......+-..| ...+.
T Consensus 64 ~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~ 137 (618)
T 1qsa_A 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPN 137 (618)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCT
T ss_pred HCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcH
Confidence 3444444445556667777777777766654432 24455555566667777788777777666665444 33445
Q ss_pred HHHHHHHHHHhcCCH
Q 009470 220 AFSIVISILCRKRRA 234 (534)
Q Consensus 220 ~~~~ll~~~~~~g~~ 234 (534)
.+..++..+.+.|.+
T Consensus 138 ~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 138 ACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHCCCC
Confidence 556666666554443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.51 E-value=21 Score=31.64 Aligned_cols=113 Identities=7% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCC
Q 009470 401 CISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPN----VNTYRILITMYCGMG 476 (534)
Q Consensus 401 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~----~~~~~~li~~~~~~g 476 (534)
...+.|++++|++....-++.. +-|...-..|++.+|-.|+++.|.+-++...+. .|+ ...|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH-----
Confidence 4567788888888777776654 347777777888888888888888887777664 333 2344444443
Q ss_pred CHHHHHHHHHHHHHcCCCCC-----CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHc
Q 009470 477 HWNNAYKYIREMIEEKCLKP-----GSSVYEMVLQQL--RRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 477 ~~~~A~~~~~~~~~~~~~~p-----~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 527 (534)
+.+++-+=.|+-.| .......++.++ ...|+.++|.++-..+.+.
T Consensus 78 ------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11222222222222 234455566655 4458888888888877654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.47 E-value=9.9 Score=29.61 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 443 TDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 443 ~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
.-+..+-++.+....+.|+.......+++|.+.+++..|+++|+-...+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33455666666667788888888888888888888888888888777664 344556766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.38 E-value=9.1 Score=29.82 Aligned_cols=66 Identities=8% Similarity=0.064 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 251 DVIVYTNLVRGWCRAGN---ISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 251 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
+..+--.++-++++..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+.+.
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33333334444444433 2334444544444331112333334444555555555555555555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.11 E-value=9.5 Score=31.06 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEY-GCAPDK-------IAFSIVISILCRKRRASEAQSFFDS 243 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~ 243 (534)
-+..+...|.++.|+-+.+.+... +..++. .++..+.+++...|++.+|...|++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344455555666555555544321 111221 1334444455555555555555554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.71 E-value=18 Score=28.62 Aligned_cols=67 Identities=7% Similarity=0.065 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 250 PDVIVYTNLVRGWCRAGN---ISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 250 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
++..+--.+.-++++..+ ..+++.+++++...+..-.......|.-++.+.|++++|.+..+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 344444444444444443 2344455555544322212233334444555555555555555555554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=81.54 E-value=12 Score=27.38 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=20.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 262 WCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
+...|++++|..+.+.+ +.||...|..|.. .+.|..+++...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34444444444443322 2344444433322 24444444444444444333
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.78 E-value=35 Score=31.47 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLK 450 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~ 450 (534)
|+.....+...|.+.+++.+|...+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555555666666666666655544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.45 E-value=16 Score=30.88 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH
Q 009470 440 SKSTDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS 498 (534)
Q Consensus 440 ~g~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~ 498 (534)
.+...++..+|..|..+|+--. ...|......+...|++.+|.++|+..++.+ -.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~-A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN-CRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CccHH
Confidence 4456788889998888765443 4567777788888899999999999888876 55643
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.42 E-value=19 Score=34.75 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCChhh--HHHH
Q 009470 291 SIVIDALCRCGQITRAHDVFAEMLEV--GCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL---GCEADTIT--YNFL 363 (534)
Q Consensus 291 ~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---g~~~~~~~--~~~l 363 (534)
..+...|.+.|++++|.+.+.++... +..--...+-.+++.+...+++..+...+.++... +-.++... ...-
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 33444444555555555555444432 11112334444455555555555555555544321 11111110 0001
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC
Q 009470 364 IDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 364 i~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
+..+...+++.+|...|-+....
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhcc
Confidence 11223456677777666665443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 534 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.28 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.26 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.17 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.55 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.49 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.45 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.43 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.34 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.23 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.21 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.18 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.02 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.95 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.84 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.83 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.8 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.7 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.49 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.42 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.1 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.98 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.56 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.55 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.44 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.39 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.54 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.25 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.0 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.77 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.11 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 83.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.26 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2.3e-21 Score=188.00 Aligned_cols=375 Identities=14% Similarity=0.088 Sum_probs=309.4
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 126 IPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHA 205 (534)
Q Consensus 126 ~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 205 (534)
+++.+|+..++.+.+.. +.++..+..+..++.+.|++++|...|+++.+.+ +.+..+|..+...|.+.|++++|++.
T Consensus 13 G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccc
Confidence 56889999999887643 3567889999999999999999999999988876 45778999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 206 FNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 206 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
+....+.. +.+..............+....+............................+....+...+.+...... -
T Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 167 (388)
T d1w3ba_ 90 YRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-N 167 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-T
T ss_pred cccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCc-c
Confidence 99988764 345555556666666667777776666666555556667777778888888999999888888876532 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLID 365 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 365 (534)
+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+++....+ ..+...+..+..
T Consensus 168 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 245 (388)
T d1w3ba_ 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLAC 245 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHH
Confidence 56778888888999999999999999988775 3467788889999999999999999999988775 566778888899
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 009470 366 CHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDM 445 (534)
Q Consensus 366 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 445 (534)
.+.+.|++++|...++++.+... -+..++..+...+...|++++|.+.++...... +.+...+..+...+...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 246 VYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHH
Confidence 99999999999999999988753 367788899999999999999999999887754 4577888899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHHcCC
Q 009470 446 VLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP-GSSVYEMVLQQLRRAGQ 513 (534)
Q Consensus 446 a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 513 (534)
|++.+++..+.. +-+..++..+...|.+.|++++|++.|+++++. .| +...|..+..+|.+.||
T Consensus 324 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 324 AVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCC
Confidence 999999988753 446778888999999999999999999999984 45 46778889898888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.9e-21 Score=187.29 Aligned_cols=364 Identities=12% Similarity=0.046 Sum_probs=310.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009470 154 MINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRR 233 (534)
Q Consensus 154 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 233 (534)
+...+.+.|++++|.+.++++.+.. +-+..++..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 4456778899999999999998875 5578899999999999999999999999998764 4467889999999999999
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 009470 234 ASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEM 313 (534)
Q Consensus 234 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m 313 (534)
+++|.+.+.......+.+...+..........+....+............. ...............+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHh
Confidence 999999999988877778888888888888888777777777666554333 4445555666777888899999888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009470 314 LEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS 393 (534)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 393 (534)
.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++....+. .+..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHH
Confidence 7764 4467788888899999999999999999988764 45677899999999999999999999999988753 4677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYC 473 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~ 473 (534)
.+..+...+.+.|++++|.+.|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 88889999999999999999999998875 3367889999999999999999999999988763 678888999999999
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 474 GMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 474 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+.|++++|++.++++++.. +-+...+..+..++.+.|++++|.+.++++++.
T Consensus 317 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999853 345677888999999999999999999999875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.2e-13 Score=126.92 Aligned_cols=242 Identities=9% Similarity=0.016 Sum_probs=116.7
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 009470 155 INLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRA 234 (534)
Q Consensus 155 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 234 (534)
...+.+.|++++|...|+++.+.+ |-+..+|..+...|...|++++|+..|++..+.. +-+...+..+...+...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 344455566666666666655554 3345555556666666666666666665555432 22344555555555555555
Q ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 235 SEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 235 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
++|.+.++......+.....+........ ..+.......+..+...+.+.+|.+.+.+..
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555543322111111000000000 0000001111122233344555555555554
Q ss_pred HcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 009470 315 EVGC-EPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNAS 393 (534)
Q Consensus 315 ~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 393 (534)
+... ..+...+..+...+...|++++|...+++..... +.+...|..+..+|...|++++|.+.++++.+... -+..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHH
Confidence 4321 2234455555555666666666666666655443 33455555556666666666666666666555431 1344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKD 420 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 420 (534)
++..+..+|.+.|++++|.+.|++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555566666666666666666655543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=3.3e-13 Score=126.79 Aligned_cols=243 Identities=11% Similarity=0.004 Sum_probs=129.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNI 268 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 268 (534)
....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...|++..+..+.+...|..++..|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 4445556666666666666665543 223455555666666666666666666655554445555566666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 009470 269 SEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQM 348 (534)
Q Consensus 269 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 348 (534)
++|.+.++++.... |+............. ..+.......+..+...+...+|.+.+.+.
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 66666665555431 111100000000000 000001111122233444556666666665
Q ss_pred HHcC-CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 009470 349 KRLG-CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNT 427 (534)
Q Consensus 349 ~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 427 (534)
.+.. ...+..++..+...+...|++++|...+++....... +...|..+..++.+.|++++|.+.|++..+.. +-+.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccH
Confidence 5432 1234555666666677777777777777776665322 45666666666777777777777777666543 2245
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
.+|..+..+|.+.|++++|+..|++..+
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666666666667777777766666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.8e-09 Score=101.50 Aligned_cols=265 Identities=11% Similarity=0.099 Sum_probs=137.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CH
Q 009470 255 YTNLVRGWCRAGNISEAERVFREMKMAG----IQP-NVYTYSIVIDALCRCGQITRAHDVFAEMLEV----GCE--P-NS 322 (534)
Q Consensus 255 ~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~ 322 (534)
+..+...+...|++++|...+++..+.. ..+ ....+..+...+...|++..+...+.+.... +.. + ..
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 4444444555555555555555443210 000 1122333444555555555555555544321 111 1 11
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC--CH
Q 009470 323 ITFNNLMRVHVKASRTEKVLQVYNQMKRLG----CEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK----GCNP--NA 392 (534)
Q Consensus 323 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~--~~ 392 (534)
..+..+...+...|+++.+...+....... .......+..+...+...++..++...+.+.... +..+ ..
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 233344455566666666666666554432 1122233444445556666666666666554432 1111 12
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEP---NTVTYNILMQMFATSKSTDMVLKLKKEMEE----NEVEPN-VNT 464 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~----~~~~p~-~~~ 464 (534)
..+......+...|+.++|...+++..+..... ....+..+...+...|++++|...+++... .+..|+ ...
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 234445556667777777777777665432221 233455566777777888888777776643 233333 345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC----CCHHHHHHHHHHHHHcCCHHHHHH
Q 009470 465 YRILITMYCGMGHWNNAYKYIREMIEEK---CLK----PGSSVYEMVLQQLRRAGQLQKHEE 519 (534)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~----p~~~~~~~l~~~~~~~g~~~~a~~ 519 (534)
+..+...|.+.|++++|.+.++++++.. +.. .....+..++..+...++.+++.+
T Consensus 294 ~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 6667777888888888888887765521 010 112334455566666777666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.2e-10 Score=102.91 Aligned_cols=215 Identities=11% Similarity=0.090 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG-QITRAHDVFAEMLEVGCEPNSITFNNLMR 330 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 330 (534)
..+|+.+...+.+.+..++|+++++++++.+.. +...|+....++...| ++++|+..++...+.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 456667777777788888888888888776433 5566777777777765 4788888888877765 336777887778
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 009470 331 VHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGD--- 407 (534)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~--- 407 (534)
.+.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|.+.++++.+.++. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 8888888888888888887764 556777888888888888888888888888877533 56667766666555554
Q ss_pred ---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 009470 408 ---VNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVE-PNVNTYRILITMY 472 (534)
Q Consensus 408 ---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-p~~~~~~~li~~~ 472 (534)
+++|.+.+.++.+.. +-+...|+.+...+. ....+++.+.++...+.... .+...+..++..|
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 456777777776654 235666665554443 34456666666666553211 2344444454444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=3.5e-09 Score=99.55 Aligned_cols=274 Identities=12% Similarity=0.097 Sum_probs=197.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC----CHHH
Q 009470 254 VYTNLVRGWCRAGNISEAERVFREMKMAGIQPN----VYTYSIVIDALCRCGQITRAHDVFAEMLEVGC-EP----NSIT 324 (534)
Q Consensus 254 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~ 324 (534)
........+...|++++|++++++..+.....+ ...+..+...|...|++++|+..+++..+... .+ ....
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 344456778899999999999999887532211 34677788899999999999999998865321 11 1345
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC---ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHH
Q 009470 325 FNNLMRVHVKASRTEKVLQVYNQMKRL----GCEA---DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKG----CNPNAS 393 (534)
Q Consensus 325 ~~~li~~~~~~g~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~ 393 (534)
+..+...+...|++..+...+.+.... +... ....+..+...+...|+++.+...+....... ......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 566777889999999999998876542 1111 12355667788999999999999999887652 222345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHH
Q 009470 394 TFNMIFRCISKLGDVNGAHRMYGKMKDL--KCEPN----TVTYNILMQMFATSKSTDMVLKLKKEMEENEVE---PNVNT 464 (534)
Q Consensus 394 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~---p~~~~ 464 (534)
.+......+...++...+...+.+.... ..... ...+..+...+...|+.++|...+++..+.... .....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5666777788899999999888776431 11111 234566677788899999999999887654222 22455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 465 YRILITMYCGMGHWNNAYKYIREMIEEK---CLKPG-SSVYEMVLQQLRRAGQLQKHEELVEKMVDR 527 (534)
Q Consensus 465 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 527 (534)
+..+...+...|++++|.+.+++++... +..|+ ...+..+...+.+.|++++|.+.+++.++.
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6678889999999999999999886421 12232 346777888999999999999999987653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=2.1e-09 Score=99.57 Aligned_cols=187 Identities=11% Similarity=0.121 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009470 338 TEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGK 417 (534)
Q Consensus 338 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 417 (534)
.++|..+|++..+...+.+...|...+..+.+.|++++|..+++++.+........+|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45566666666654334445555666666666667777777776666553332334566666666666677777777776
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 009470 418 MKDLKCEPNTVTYNILMQM-FATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKP 496 (534)
Q Consensus 418 m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p 496 (534)
+.+.+. .+...|...+.. +...|+.+.|..+|+.+.+. .+.+...|..++..+...|++++|..+|+++++..+..|
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 665442 233333333322 23346666677777766664 244556666666666677777777777777666543333
Q ss_pred C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 497 G--SSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 497 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
. ...|...+..-...|+.+.+..+.+++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34566666655666777777777666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.5e-09 Score=99.17 Aligned_cols=214 Identities=11% Similarity=0.061 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009470 149 DLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAG-LAAEAVHAFNRMEEYGCAPDKIAFSIVISI 227 (534)
Q Consensus 149 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~ 227 (534)
+.++.+..++.+.+.+++|+++++++.+.+ |-+..+|+....++...| ++++|++.+++..+.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 456666667777888888888888888876 557778888888888766 4888888888887754 4457788888888
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQ----- 302 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----- 302 (534)
+.+.|++++|++.++++.+..+.+..+|..+...+.+.|++++|++.++++++.+.. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 888888888888888888777778888888888888888888888888888876433 56677776666666554
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHH
Q 009470 303 -ITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCE-ADTITYNFLIDCH 367 (534)
Q Consensus 303 -~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~ 367 (534)
+++|++.+...++.. +.+...|+.+...+ .....+++.+.++...+.... .+...+..++..|
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 567888887777764 33666666665544 344456677777766554322 2334445555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=6.8e-09 Score=95.96 Aligned_cols=184 Identities=8% Similarity=0.079 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Q 009470 305 RAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMV 384 (534)
Q Consensus 305 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 384 (534)
+|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+++.+........+|...+..+.+.|+.+.|.++|+++.
T Consensus 82 ~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al 161 (308)
T d2onda1 82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33344444333222223333333344444444444444444444332211112234444444444444444444444444
Q ss_pred HCCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-
Q 009470 385 RKGCNPNASTFNMIFRC-ISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE-VEPN- 461 (534)
Q Consensus 385 ~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~p~- 461 (534)
+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...++.+...|+++.|..+|++..... ..|+
T Consensus 162 ~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 162 EDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp TSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 33221 22222222211 122344455555555544432 2234445555555555555555555555544431 1211
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 009470 462 -VNTYRILITMYCGMGHWNNAYKYIREMIE 490 (534)
Q Consensus 462 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 490 (534)
...|...+..-...|+.+.+.++.+++.+
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23444444444444555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=1.9e-10 Score=108.06 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=143.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCChhHH
Q 009470 265 AGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCG--QITRAHDVFAEMLEVGCEPNSITFNN-LMRVHVKASRTEKV 341 (534)
Q Consensus 265 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~a 341 (534)
.|++++|+.++++..+...+ +...|..+..++...+ ++++|...++++.+.. +.+...+.. ....+...+..++|
T Consensus 86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 34456666666666654322 4555555555555544 3667777777766653 234444433 33455556777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 342 LQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 342 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
+..++++.+.. +-+...|..+..++.+.|++++|...+....+.. |. .......+...+..+++...+......
T Consensus 164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~ 237 (334)
T d1dcea1 164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLG 237 (334)
T ss_dssp HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence 77777766654 4456667777777777777766655444333321 11 112233345566677777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCC-HHH
Q 009470 422 KCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPG-SSV 500 (534)
Q Consensus 422 ~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~ 500 (534)
. .++...+..+...+...|+.++|...+.+..+.. +.+...+..+...+...|++++|+++++++++. .|+ ...
T Consensus 238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l---dP~~~~y 312 (334)
T d1dcea1 238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV---DPMRAAY 312 (334)
T ss_dssp C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH---CGGGHHH
T ss_pred C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CcccHHH
Confidence 4 3345556666777777888888888888876653 334567777888888999999999999999884 464 445
Q ss_pred HHHHHHHHH
Q 009470 501 YEMVLQQLR 509 (534)
Q Consensus 501 ~~~l~~~~~ 509 (534)
|..|...+.
T Consensus 313 ~~~L~~~~~ 321 (334)
T d1dcea1 313 LDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.11 E-value=9.2e-10 Score=103.32 Aligned_cols=259 Identities=7% Similarity=-0.056 Sum_probs=148.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----------HHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 009470 153 EMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRY----------VRAGLAAEAVHAFNRMEEYGCAPDKIAFS 222 (534)
Q Consensus 153 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----------~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 222 (534)
.++....+.+..++|+++++.+.+.+ |-+...|+..-..+ ...|++++|+..+++..+.. +-+...|.
T Consensus 34 ~~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 34 AVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 33333334444567777777777665 33444554333322 22344666777777766543 33455555
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHhhccCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 009470 223 IVISILCRKR--RASEAQSFFDSLKDKFEPDVIVYTN-LVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR 299 (534)
Q Consensus 223 ~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 299 (534)
.+..++...+ +.++|...+++.....+.+...+.. ....+...+.+++|+..++++.+.+.. +...|+.+...+.+
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 5555555544 3667777777766555555655543 335555667777777777776665432 56666667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHH
Q 009470 300 CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKV 379 (534)
Q Consensus 300 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 379 (534)
.|++++|...+....+. .|+ ...+...+...+..+++...+....... +.+...+..++..+...|+.++|...
T Consensus 191 ~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 77766665544433322 111 1122233445566666666666665543 34445555566666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 009470 380 LNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDL 421 (534)
Q Consensus 380 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 421 (534)
+.+..+... -+..++..+..++...|+.++|.+.+++..+.
T Consensus 265 ~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 265 LQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 776665532 14455666666677777777777777777664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.9e-09 Score=95.65 Aligned_cols=149 Identities=15% Similarity=-0.001 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 009470 130 QVLSFFNWVTARPEFVH--SPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFN 207 (534)
Q Consensus 130 ~al~~f~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (534)
.++.-++.+........ ...+|..+..+|.+.|+++.|...|++..+.+ +.+..+|..+..+|.+.|++++|++.|+
T Consensus 17 ~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 34444455554332211 22366777778888888888888888887765 4567788888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 208 RMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKM 280 (534)
Q Consensus 208 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 280 (534)
+..+.. +-+..++..+..++...|++++|.+.|++..+..+.+......+..++.+.+..+.+..+......
T Consensus 96 ~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 96 SVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 887754 334567777777788888888888888877666566666655555566666665555555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=9.8e-09 Score=92.08 Aligned_cols=150 Identities=11% Similarity=-0.043 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 165 DLAWHFIDLMKSRNVE---ITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFF 241 (534)
Q Consensus 165 ~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 241 (534)
+.++.-++++...... -...+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|++.|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 3444445555443211 123466667777788888888888888877653 345667777777777788888888888
Q ss_pred HHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 009470 242 DSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 242 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 316 (534)
++.....+.+..++..+...+...|++++|.+.|++..+... .+......+..++.+.+..+.+..+.......
T Consensus 95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 777766666677777777777777777777777777766532 23333333444445555555555444444443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.63 E-value=0.00013 Score=64.63 Aligned_cols=223 Identities=14% Similarity=0.048 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 009470 252 VIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCR----CGQITRAHDVFAEMLEVGCEPNSITFNN 327 (534)
Q Consensus 252 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 327 (534)
+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666666666777777766666654 34444445555554 446666666666665554 3333333
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 328 LMRVHVK----ASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMIF 399 (534)
Q Consensus 328 li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 399 (534)
+...+.. ..+.+.|...++...+.|. ......+...+.. ......|...+......+ +...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 3333322 3455666666666665542 1122222222221 234555555555555542 445555555
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009470 400 RCISK----LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITM 471 (534)
Q Consensus 400 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~ 471 (534)
..+.. ..+...+...++...+.| +...+..+...|.. .+++++|..+|+...+.| +...+..|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 55553 344556666666665543 44444445444443 456777777777776665 34444555555
Q ss_pred HHh----CCCHHHHHHHHHHHHHcC
Q 009470 472 YCG----MGHWNNAYKYIREMIEEK 492 (534)
Q Consensus 472 ~~~----~g~~~~A~~~~~~~~~~~ 492 (534)
|.+ ..++++|.++|++..+.|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 543 235667777777776655
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.9e-06 Score=72.73 Aligned_cols=124 Identities=10% Similarity=-0.025 Sum_probs=71.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH
Q 009470 190 VRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (534)
...+...|++++|++.|+++ .+++..+|..+..++...|++++|++.|++..+..+.+...|..+..++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 33445566666666666543 23455556666666666666666666666665555556666666666666666666
Q ss_pred HHHHHHHHHHHCCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 270 EAERVFREMKMAGI--------------QPN-VYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 270 ~A~~~~~~m~~~g~--------------~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
+|++.|++...... ..+ ..++..+..++.+.|++++|.+.++...+..
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666666543210 000 2334445556666677777776666665543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=2.4e-06 Score=72.11 Aligned_cols=130 Identities=14% Similarity=0.055 Sum_probs=100.8
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
.|+. ...+...|+++.|++.|+++. +++..+|..+...|...|++++|++.|++..+.. +-+...|..+..++.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 3443 445667899999998887642 4567788889999999999999999999988865 456778888888899
Q ss_pred hcCCHHHHHHHHHHhhccCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 009470 230 RKRRASEAQSFFDSLKDKFEP----------------DVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQP 285 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~----------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 285 (534)
+.|++++|++.|++.....+. ...++..+..++.+.|++++|.+.+....+....+
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999988876432111 13567778889999999999999999988764443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.59 E-value=0.00015 Score=64.04 Aligned_cols=226 Identities=12% Similarity=0.024 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHH
Q 009470 286 NVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVK----ASRTEKVLQVYNQMKRLGCEADTITYN 361 (534)
Q Consensus 286 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 361 (534)
|+..+..|...+.+.|++++|++.|++..+.| +...+..|...|.. ..+...|...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556667778888999999999999999876 66677777777776 568889999999888765 334444
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 009470 362 FLIDCHCK----DGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCIS----KLGDVNGAHRMYGKMKDLKCEPNTVTYNIL 433 (534)
Q Consensus 362 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 433 (534)
.+...+.. ..+.+.|...++...+.|. ......+...+. .......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 55544443 4678899999999988763 223333333333 344567778888877764 467778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 434 MQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 434 i~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
...|.. ..+...+...++...+.| +......+...|.. ..++++|+.+|++..+.+ +...+..|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~LG 221 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLG 221 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc----CHHHHHHHH
Confidence 888775 457778888888888865 55666666655654 568999999999999865 355666677
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCC
Q 009470 506 QQLRR----AGQLQKHEELVEKMVDRGFT 530 (534)
Q Consensus 506 ~~~~~----~g~~~~a~~~~~~~~~~g~~ 530 (534)
..|.+ ..+.++|.+.+++..+.|..
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 77765 34889999999999988853
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=1.6e-06 Score=78.76 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=38.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSR----NVE-ITVDTFSILVRRYVRAGLAAEAVHAFNRME 210 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 210 (534)
.|.....+|...|++++|.+.|++..+. +-+ ....+|..+...|.+.|++++|++.+++..
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 4666666777777777777777766542 111 113456666677777777777776666554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=2.2e-06 Score=77.73 Aligned_cols=55 Identities=11% Similarity=0.087 Sum_probs=29.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009470 189 LVRRYVRAGLAAEAVHAFNRMEEY----GCAPD-KIAFSIVISILCRKRRASEAQSFFDS 243 (534)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~ 243 (534)
....|...|++++|++.|.+..+. +-+++ ..+|..+..+|.+.|++++|.+.+++
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~ 102 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 455666777777777777766432 11111 23445555555555555555555544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.1e-06 Score=70.07 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=68.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 009470 398 IFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGH 477 (534)
Q Consensus 398 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~ 477 (534)
....+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|...|+++.+.. +-+...|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3455667788888888888777765 3366777777778888888888888888877753 4456777777788888888
Q ss_pred HHHHHHHHHHHHHcC
Q 009470 478 WNNAYKYIREMIEEK 492 (534)
Q Consensus 478 ~~~A~~~~~~~~~~~ 492 (534)
+++|++.++++++..
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 888888888887743
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3.6e-06 Score=64.52 Aligned_cols=91 Identities=12% Similarity=0.030 Sum_probs=50.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH
Q 009470 190 VRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (534)
...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..+++.....+.+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 344555555555555555555443 3344555555555555555555555555555544555555555555556666666
Q ss_pred HHHHHHHHHHHC
Q 009470 270 EAERVFREMKMA 281 (534)
Q Consensus 270 ~A~~~~~~m~~~ 281 (534)
+|+..|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 666655555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=4.5e-06 Score=68.03 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=48.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHH
Q 009470 190 VRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNIS 269 (534)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 269 (534)
...|.+.|++++|+..|++..+.. +-+...|..+..++...|++++|++.|++..+..+.+..+|..++.++...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 344445555555555555555443 3344455555555555555555555555555444445555555555555555555
Q ss_pred HHHHHHHHHHHC
Q 009470 270 EAERVFREMKMA 281 (534)
Q Consensus 270 ~A~~~~~~m~~~ 281 (534)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=6.8e-06 Score=62.93 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=56.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 225 ISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQIT 304 (534)
Q Consensus 225 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 304 (534)
...+.+.|++++|+..|++.....|.+...|..+..+|.+.|++++|+..+++..+.+. .+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHH
Confidence 34455666666666666666655566666666666666666666666666666665432 25555666666666666666
Q ss_pred HHHHHHHHHHHc
Q 009470 305 RAHDVFAEMLEV 316 (534)
Q Consensus 305 ~A~~~~~~m~~~ 316 (534)
+|+..|++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=5e-06 Score=70.58 Aligned_cols=97 Identities=9% Similarity=-0.051 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 009470 182 TVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRG 261 (534)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 261 (534)
+...+......|.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..|++..+..|-+..+|..+..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444445555555555555555555555433 33444555555555555555555555555554444455555555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 009470 262 WCRAGNISEAERVFREMK 279 (534)
Q Consensus 262 ~~~~g~~~~A~~~~~~m~ 279 (534)
|.+.|++++|+..|++..
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=4.7e-06 Score=70.75 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009470 390 PNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILI 469 (534)
Q Consensus 390 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li 469 (534)
|+...+......+.+.|++++|+..|.+..+.. +-+...|..+..+|.+.|++++|+..+++..+.. +-+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 677778888999999999999999999998875 3478889999999999999999999999998753 44677899999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc
Q 009470 470 TMYCGMGHWNNAYKYIREMIEE 491 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~ 491 (534)
.+|.+.|++++|+..|+++++.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998873
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.23 E-value=7.5e-06 Score=62.11 Aligned_cols=85 Identities=15% Similarity=0.074 Sum_probs=36.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 192 RYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEA 271 (534)
Q Consensus 192 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 271 (534)
.+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|++..+..|.+..+|..+...|...|++++|
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHH
Confidence 3344444444444444444332 123344444444444444444444444444433334444444444444444444444
Q ss_pred HHHHHH
Q 009470 272 ERVFRE 277 (534)
Q Consensus 272 ~~~~~~ 277 (534)
++.+++
T Consensus 104 ~~~l~~ 109 (112)
T d1hxia_ 104 LASLRA 109 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.21 E-value=1e-05 Score=61.34 Aligned_cols=90 Identities=6% Similarity=-0.143 Sum_probs=63.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcC
Q 009470 433 LMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAG 512 (534)
Q Consensus 433 li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 512 (534)
+...+.+.|++++|+..+++..+.. +-+...|..+..++.+.|++++|+..++++++.. +.+...+..+...|...|
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCC
Confidence 4455667777777777777777653 3356777777777777777777777777777753 345667777777777777
Q ss_pred CHHHHHHHHHHHH
Q 009470 513 QLQKHEELVEKMV 525 (534)
Q Consensus 513 ~~~~a~~~~~~~~ 525 (534)
+.++|.+.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 7777777777653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=4.9e-06 Score=64.08 Aligned_cols=101 Identities=11% Similarity=0.132 Sum_probs=69.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKS---TDMVLKLKKEMEENEVEPN-VNTYRILITM 471 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~p~-~~~~~~li~~ 471 (534)
..++..+...+++++|++.|++....+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 345666777778888888888877765 3466777777777776544 4457888887776532232 2356677778
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCCHHH
Q 009470 472 YCGMGHWNNAYKYIREMIEEKCLKPGSSV 500 (534)
Q Consensus 472 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 500 (534)
|.+.|++++|+++|+++++. .|+..-
T Consensus 82 y~~~g~~~~A~~~~~~aL~~---~P~~~~ 107 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT---EPQNNQ 107 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHHHhhhHHHHHHHHHHHHh---CcCCHH
Confidence 88888888888888888883 465543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=0.0022 Score=57.95 Aligned_cols=269 Identities=10% Similarity=0.063 Sum_probs=134.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
--..+.+.|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. -+..+|..+...+.
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp -------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 34456677777788888877776542 3555677777777777777766543 24556777777777
Q ss_pred hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 009470 230 RKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDV 309 (534)
Q Consensus 230 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~ 309 (534)
+......|... ......+......++..|-..|.+++...+++..... -..+...++.++..|++.+. + ++
T Consensus 81 ~~~e~~la~i~----~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~---kl 151 (336)
T d1b89a_ 81 DGKEFRLAQMC----GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q---KM 151 (336)
T ss_dssp HTTCHHHHHHT----TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H---HH
T ss_pred hCcHHHHHHHH----HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H---HH
Confidence 66655443211 1112234445556777777777777777777766532 23455566777777776542 2 23
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHH---------
Q 009470 310 FAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVL--------- 380 (534)
Q Consensus 310 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~--------- 380 (534)
.+.+......-| ...+++.|.+.+-++++.-+ |.+.|++++|..++
T Consensus 152 ~e~l~~~s~~y~---~~k~~~~c~~~~l~~elv~L----------------------y~~~~~~~~A~~~~i~~~~~~~~ 206 (336)
T d1b89a_ 152 REHLELFWSRVN---IPKVLRAAEQAHLWAELVFL----------------------YDKYEEYDNAIITMMNHPTDAWK 206 (336)
T ss_dssp HHHHHHHSTTSC---HHHHHHHHHTTTCHHHHHHH----------------------HHHTTCHHHHHHHHHHSTTTTCC
T ss_pred HHHHHhccccCC---HHHHHHHHHHcCChHHHHHH----------------------HHhcCCHHHHHHHHHHcchhhhh
Confidence 333332211111 12334455445544444444 44444444443332
Q ss_pred -----HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 009470 381 -----NSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEE 455 (534)
Q Consensus 381 -----~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 455 (534)
+-..+. .|+..+-.++..|... +.+-...++..+... .|. ..++..+-+.+++......++...+
T Consensus 207 ~~~f~e~~~k~---~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v~~ 276 (336)
T d1b89a_ 207 EGQFKDIITKV---ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSVQN 276 (336)
T ss_dssp HHHHHHHHHHC---SSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred HHHHHHHHHcc---CChHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 222222 2333444444444432 122233333333221 121 3345555666666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHH
Q 009470 456 NEVEPNVNTYRILITMYCGMGHWNN 480 (534)
Q Consensus 456 ~~~~p~~~~~~~li~~~~~~g~~~~ 480 (534)
.| +..+.+++...|...++++.
T Consensus 277 ~n---~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 277 HN---NKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp TC---CHHHHHHHHHHHHHTTCHHH
T ss_pred cC---hHHHHHHHHHHHhCcchhHH
Confidence 44 44677888888888888644
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=5.5e-05 Score=62.02 Aligned_cols=81 Identities=6% Similarity=-0.062 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQ 507 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 507 (534)
.+|+.+..+|.+.|++++|+..++...+.. +.+...|..+..+|...|++++|+..|+++++.. +-+......+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 356778888999999999999999998864 5578889999999999999999999999999854 2244444444444
Q ss_pred HHHc
Q 009470 508 LRRA 511 (534)
Q Consensus 508 ~~~~ 511 (534)
..+.
T Consensus 140 ~~~~ 143 (170)
T d1p5qa1 140 QQRI 143 (170)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=1.5e-05 Score=61.31 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009470 223 IVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGN---ISEAERVFREMKMAGIQPN-VYTYSIVIDALC 298 (534)
Q Consensus 223 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 298 (534)
.+++.+...+++++|++.|++.....+.+..++..+..++.+.++ +++|+.+++++...+..|+ ..++..+..+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 344555555566666666666555555556666666666655333 3345666666554432222 224455556666
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 009470 299 RCGQITRAHDVFAEMLEV 316 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m~~~ 316 (534)
+.|++++|++.|+++++.
T Consensus 84 ~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHh
Confidence 666666666666666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=0.0039 Score=56.30 Aligned_cols=292 Identities=10% Similarity=0.030 Sum_probs=161.7
Q ss_pred CChHHHHHHHHhhhcccCCCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 009470 107 ISPSTVRHVIEKSCGVRHGIPLLQVLSFFNWVTARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTF 186 (534)
Q Consensus 107 ~~~~~~~~~l~~~~~~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 186 (534)
.+...+..+...|... +.++.|..++. ...-|..++..+.+.++++.|.+++.+. + +..+|
T Consensus 12 ~n~~d~~~i~~~c~~~---~lye~A~~lY~----------~~~d~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~ 72 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDE---KMYDAAKLLYN----------NVSNFGRLASTLVHLGEYQAAVDGARKA---N---STRTW 72 (336)
T ss_dssp C-------------------CTTTHHHHHH----------HTTCHHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHH
T ss_pred CCcCCHHHHHHHHHHC---CCHHHHHHHHH----------hCCCHHHHHHHHHhhccHHHHHHHHHHc---C---CHHHH
Confidence 3344455566666433 23556666665 1235677888889999999998877653 2 45799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC
Q 009470 187 SILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAG 266 (534)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 266 (534)
..+...+.+......|. +...+...+......++..|-..|.+++...+++........+...++.++..|++.+
T Consensus 73 k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 73 KEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 99999999887765432 2233344567777889999999999999999999876656678889999999999875
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 009470 267 NISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYN 346 (534)
Q Consensus 267 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 346 (534)
. ++ +.+.+...+.. .....++..|-+.+-++++.-++..+.+. + .....++. ...+..++....+
T Consensus 148 ~-~k---l~e~l~~~s~~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~~----~-~A~~~~i~---~~~~~~~~~~f~e 212 (336)
T d1b89a_ 148 P-QK---MREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY----D-NAIITMMN---HPTDAWKEGQFKD 212 (336)
T ss_dssp H-HH---HHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH----H-HHHHHHHH---STTTTCCHHHHHH
T ss_pred h-HH---HHHHHHhcccc---CCHHHHHHHHHHcCChHHHHHHHHhcCCH----H-HHHHHHHH---cchhhhhHHHHHH
Confidence 3 33 33333331111 12234556666677777766666654321 1 11111111 1111111111111
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 009470 347 QMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPN 426 (534)
Q Consensus 347 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 426 (534)
...+. .|...|-..+..|... +.+-...++..+... .| -..++..+.+.+++......++...+.+ +
T Consensus 213 ~~~k~---~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d---~~r~V~~~~k~~~l~li~p~Le~v~~~n---~ 279 (336)
T d1b89a_ 213 IITKV---ANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LD---HTRAVNYFSKVKQLPLVKPYLRSVQNHN---N 279 (336)
T ss_dssp HHHHC---SSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CC---HHHHHHHHHHTTCTTTTHHHHHHHHTTC---C
T ss_pred HHHcc---CChHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CC---HHHHHHHHHhcCCcHHHHHHHHHHHHcC---h
Confidence 12221 2333344444444332 223333333333322 11 1334555566777777777777766544 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 009470 427 TVTYNILMQMFATSKSTDMVLKLK 450 (534)
Q Consensus 427 ~~~~~~li~~~~~~g~~~~a~~l~ 450 (534)
....+++...|...++++.-.+.+
T Consensus 280 ~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHHH
Confidence 568889999999999876544433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=0.00015 Score=59.24 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 009470 326 NNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRK 386 (534)
Q Consensus 326 ~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 386 (534)
+.+..+|.+.|++++|+..++...+.. +.+..+|..+..+|...|++++|...|+++.+.
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444444444444444444444432 223444444444444444444444444444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=0.00016 Score=57.85 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSV 500 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 500 (534)
.+|..+..+|.+.|++++|++.++...+.. +.+..+|..+..++...|++++|+..|++.++. .|+...
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l---~P~n~~ 136 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL---NPNNLD 136 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh---CCCCHH
Confidence 467778888999999999999999988864 567889999999999999999999999999984 465433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=0.00014 Score=56.21 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHH
Q 009470 396 NMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENE--VEPN----VNTYRILI 469 (534)
Q Consensus 396 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~p~----~~~~~~li 469 (534)
..+...+...|++++|++.|.+.++.+. .+...|..+..+|.+.|++++|+..++++.+.. .... ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3455566667777777777777666542 356666667777777777777777777665421 0001 23566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 009470 470 TMYCGMGHWNNAYKYIREMIEEKCLKPGSSVY 501 (534)
Q Consensus 470 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~ 501 (534)
..+...+++++|++.|++.+.. .++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~---~~~~~~~ 115 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE---HRTPDVL 115 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc---CCCHHHH
Confidence 7777788888888888877763 3555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.00016 Score=59.03 Aligned_cols=80 Identities=9% Similarity=-0.019 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 009470 426 NTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVL 505 (534)
Q Consensus 426 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 505 (534)
....|..+..++.+.|++++|+..+++..+.. +.+...|..+..++...|++++|++.|+++++.. +.+......+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~ 152 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34567778888999999999999999999875 5678889999999999999999999999999954 23444455544
Q ss_pred HHH
Q 009470 506 QQL 508 (534)
Q Consensus 506 ~~~ 508 (534)
.+.
T Consensus 153 ~~~ 155 (169)
T d1ihga1 153 KVK 155 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=1.1e-05 Score=79.06 Aligned_cols=226 Identities=8% Similarity=-0.010 Sum_probs=124.7
Q ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 009470 236 EAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNV-YTYSIVIDALCRCGQITRAHDVFAEML 314 (534)
Q Consensus 236 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~ 314 (534)
+|.+.|++....-+.....+..+..++...|++++| |++++.. .|+. ..++.. ...-...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE--QDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH--HHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH--HHHHHHHHHHHHHHHHHhc
Confidence 677888877654344566777788888888888876 6666543 2221 111111 1111112455666676666
Q ss_pred HcCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 009470 315 EVGCEPNSITFNNLMRV--HVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNA 392 (534)
Q Consensus 315 ~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 392 (534)
+....++..-....+.. ....+.++.++..+....+.. ..+...+..+...+.+.|+.++|...+....... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 54433333222222222 223444555555554443332 3456667778888888999999988887766532 23
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009470 393 STFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMY 472 (534)
Q Consensus 393 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~ 472 (534)
..+..+...+...|++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+..... +|-..++..|...+
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 567778888899999999999999998765 3366889999999999999999999999988765 66777888887766
Q ss_pred Hh
Q 009470 473 CG 474 (534)
Q Consensus 473 ~~ 474 (534)
.+
T Consensus 231 ~~ 232 (497)
T d1ya0a1 231 SK 232 (497)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.84 E-value=5.2e-06 Score=81.44 Aligned_cols=228 Identities=8% Similarity=-0.049 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 009470 130 QVLSFFNWVTAR-PEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNR 208 (534)
Q Consensus 130 ~al~~f~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 208 (534)
+|.+.|+.+... ++ ..+.+..+..++...|++++| |+++...+.. ....++ +....-...+..+++.++.
T Consensus 4 eA~q~~~qA~~l~p~---~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~--~e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD---MTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKK--VEQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHHGG---GTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHT--HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC---CHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 455666665531 11 122344455555566666655 5555433211 001111 1111111123456666666
Q ss_pred HHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 009470 209 MEEYGCAPDKIAFSIVISI--LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 209 m~~~g~~~~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
..+....++..-....+.. ....+.++.|+..+....+..+++...+..+...+.+.|+.++|...+.+..... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 6544333333222222111 2223445555544444333345566778888888888899988888777765421 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 009470 287 VYTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNFLIDC 366 (534)
Q Consensus 287 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 366 (534)
..++..+.+.+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+..... +|-..++..|...
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence 3466778888889999999999999988875 4466789999999999999999999998888765 5677788888877
Q ss_pred HHHcC
Q 009470 367 HCKDG 371 (534)
Q Consensus 367 ~~~~g 371 (534)
+.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 76543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.00018 Score=55.57 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=24.4
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMK 279 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 279 (534)
.+.+.|++++|++.|++..+..+.+..+|..+..+|.+.|++++|++.+++++
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 34444444444444444444334444444444444444444444444444443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.83 E-value=0.00045 Score=56.19 Aligned_cols=95 Identities=8% Similarity=0.061 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHH
Q 009470 428 VTYNILMQMFATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGS-SVYEMVLQ 506 (534)
Q Consensus 428 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~ 506 (534)
.+|..+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|++.|+++++. .|+. .....+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l---~P~n~~~~~~l~~ 140 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQIFM 140 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 356667788899999999999999988864 667888999999999999999999999999984 4544 44444444
Q ss_pred HHHHcCCH-HHHHHHHHHHHH
Q 009470 507 QLRRAGQL-QKHEELVEKMVD 526 (534)
Q Consensus 507 ~~~~~g~~-~~a~~~~~~~~~ 526 (534)
...+.+.. +...+++.+|.+
T Consensus 141 ~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 141 CQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHh
Confidence 43343333 234455555543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.80 E-value=0.00035 Score=55.85 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEMLEVG 317 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 317 (534)
.+|+.+..+|.+.|++++|++.+++..+.+ +.+..+|..+..++...|++++|+..|+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345566666666666666666666666543 2255666666666666667777766666666653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.00021 Score=58.29 Aligned_cols=80 Identities=5% Similarity=-0.059 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009470 219 IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALC 298 (534)
Q Consensus 219 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 298 (534)
..+..+..++.+.|++++|+..+++..+..+.+..+|..+..++...|++++|+..|++..+.... +......+..+..
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~ 156 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 345556666677777777777777766666666777777777777777777777777777664322 3444444444433
Q ss_pred H
Q 009470 299 R 299 (534)
Q Consensus 299 ~ 299 (534)
+
T Consensus 157 ~ 157 (169)
T d1ihga1 157 K 157 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.73 E-value=0.00035 Score=57.42 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 009470 253 IVYTNLVRGWCRAGNISEAERVFREMKMAGIQPNVYTYSIVIDALCRCGQITRAHDVFAEML-----EVGCEPNSIT 324 (534)
Q Consensus 253 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 324 (534)
..+..++..+.+.|++++|+..++++.+... -+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4455566666666666666666666665432 255666666666666666666666666652 2466666544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.70 E-value=0.00045 Score=56.15 Aligned_cols=108 Identities=11% Similarity=-0.062 Sum_probs=61.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009470 150 LYHEMINLAGKVRQFDLAWHFIDLMKSR---NVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKIAFSIVIS 226 (534)
Q Consensus 150 ~~~~li~~~~~~~~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~ 226 (534)
.+......+.+.|+++.|...|++.... ....+... ....+.+ ....|..+..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~~-------~~~~~~Nla~ 72 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASESF-------LLAAFLNLAM 72 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcchh-------HHHHHHhHHH
Confidence 4555666777788888888887765432 11111100 0000000 1223444555
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 227 ILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 227 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
+|.+.|++++|+..++......+.+..+|..+..++...|++++|...|+++.+.
T Consensus 73 ~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 73 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666666555666666666666666666666666666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.69 E-value=9.3e-05 Score=58.73 Aligned_cols=127 Identities=9% Similarity=0.107 Sum_probs=70.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
|-+.+.+++|...++...+..+ -+...+..+..++...+++..+.+ ..+.+++|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~A 60 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEA 60 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHH
Confidence 3445556666666666666542 245555555555543322211111 11223445
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCGMG-----------HWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQ 515 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 515 (534)
+..+++..+.. +-+..+|..+..+|...| .+++|.+.|+++++ +.|+...|..-+..+ .
T Consensus 61 i~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~---l~P~~~~~~~~L~~~------~ 130 (145)
T d1zu2a1 61 ITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMT------A 130 (145)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH------H
T ss_pred HHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc---cCCCHHHHHHHHHHH------H
Confidence 55555554432 334445555554444332 46889999999998 568877766555443 5
Q ss_pred HHHHHHHHHHHcCC
Q 009470 516 KHEELVEKMVDRGF 529 (534)
Q Consensus 516 ~a~~~~~~~~~~g~ 529 (534)
+|.+++.++.++|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 67788888888775
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.60 E-value=0.0008 Score=55.16 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-----HcCCCCChhhH
Q 009470 288 YTYSIVIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMK-----RLGCEADTITY 360 (534)
Q Consensus 288 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-----~~g~~~~~~~~ 360 (534)
..+..+...+.+.|++++|+..++.+.+.. +-+...|..++.++.+.|+.++|++.|+++. +.|+.|...+-
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 456677888888899999999888888875 4578888888888999999999988888763 35888887653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.60 E-value=6.7e-05 Score=66.16 Aligned_cols=15 Identities=0% Similarity=0.087 Sum_probs=6.0
Q ss_pred HcCCHHHHHHHHHHH
Q 009470 299 RCGQITRAHDVFAEM 313 (534)
Q Consensus 299 ~~g~~~~A~~~~~~m 313 (534)
..|+.++|.+.++++
T Consensus 111 ~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 111 VSQDYEQVSELALQI 125 (264)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHH
Confidence 334444444444333
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.49 E-value=9.5e-05 Score=65.16 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=66.7
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 009470 228 LCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMAGIQPN-VYTYSIVIDALCRCGQITRA 306 (534)
Q Consensus 228 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~A 306 (534)
..+.|++++|++.+++..+..|.|...+..+...++..|++++|.+.++...+. .|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 345677777777777777766777777777777777777777777777777664 233 33333333333222222222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 009470 307 HDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRL 351 (534)
Q Consensus 307 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 351 (534)
..-.......+-+++...+......+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111110000111122233333445566677777777777766554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.42 E-value=0.00048 Score=54.41 Aligned_cols=34 Identities=12% Similarity=-0.051 Sum_probs=14.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009470 195 RAGLAAEAVHAFNRMEEYGCAPDKIAFSIVISILC 229 (534)
Q Consensus 195 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~ 229 (534)
+.+.+++|++.|+...+.. +.+..++..+..++.
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~ 42 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLL 42 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHH
Confidence 3344455555555544432 233334444443333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.10 E-value=0.0019 Score=51.44 Aligned_cols=90 Identities=13% Similarity=0.033 Sum_probs=47.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCC----------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCC----
Q 009470 437 FATSKSTDMVLKLKKEMEENE-VEP----------NVNTYRILITMYCGMGHWNNAYKYIREMIEEK----CLKPG---- 497 (534)
Q Consensus 437 ~~~~g~~~~a~~l~~~m~~~~-~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~p~---- 497 (534)
+...|++++|+..|++..+.. -.| ....|+.+..+|...|++++|++.+++.++.. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 344455555555555554310 001 12455566666666777777666666665421 01111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 498 -SSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 498 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
...+..+..+|...|++++|.+.++++++
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344556667777777777777776654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.98 E-value=0.0083 Score=47.53 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=45.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-
Q 009470 259 VRGWCRAGNISEAERVFREMKMAGI-QPN----------VYTYSIVIDALCRCGQITRAHDVFAEMLEV-----GCEPN- 321 (534)
Q Consensus 259 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~- 321 (534)
...+...|++++|++.|++.++... .|+ ...|+.+..+|.+.|++++|++.+++..+. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344555667777777766654210 011 244556666666666666666666655432 11111
Q ss_pred ----HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 009470 322 ----SITFNNLMRVHVKASRTEKVLQVYNQMK 349 (534)
Q Consensus 322 ----~~~~~~li~~~~~~g~~~~a~~~~~~~~ 349 (534)
...++.+..+|...|++++|+..|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1123344445555555555555555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.56 E-value=0.045 Score=41.62 Aligned_cols=82 Identities=12% Similarity=0.045 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH----cC
Q 009470 441 KSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRR----AG 512 (534)
Q Consensus 441 g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 512 (534)
.+.++|.+++++..+.| +......|...|.. ..+.++|+++|++..+.+ +......|...|.. ..
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g----~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC----cchHHHHHHHHHHcCCccCC
Confidence 34445555555554443 22333333333322 234555555555555533 22233334334333 24
Q ss_pred CHHHHHHHHHHHHHcCC
Q 009470 513 QLQKHEELVEKMVDRGF 529 (534)
Q Consensus 513 ~~~~a~~~~~~~~~~g~ 529 (534)
+.++|.+++++..+.|.
T Consensus 110 d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 55555555555555553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.011 Score=42.14 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 148 PDLYHEMINLAGKVRQFDLAWHFIDLMKSRN-----VEIT-VDTFSILVRRYVRAGLAAEAVHAFNRMEE 211 (534)
Q Consensus 148 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 211 (534)
.+.+..+...+.+.|+++.|...|++..+.. ..++ ..+++.+..++.+.|++++|++.++++.+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3334444444444444444444444433220 0011 23344444444444444444444444444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.012 Score=42.04 Aligned_cols=77 Identities=8% Similarity=-0.130 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 009470 184 DTFSILVRRYVRAGLAAEAVHAFNRMEEYG-----CAPD-KIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTN 257 (534)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 257 (534)
..+-.+...+.+.|++++|+.+|++..+.. ..++ ..++..+..++.+.|++++|++.++++.+..|.+..+++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 344567888999999999999999876431 1222 5688999999999999999999999988877778888877
Q ss_pred HHH
Q 009470 258 LVR 260 (534)
Q Consensus 258 li~ 260 (534)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.44 E-value=0.059 Score=40.94 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=49.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CC
Q 009470 405 LGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFAT----SKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCG----MG 476 (534)
Q Consensus 405 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~----~g 476 (534)
..+.++|.+++++..+.| +...+..|...|.. ..+.++|.++++...+.| +......|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 345666777777666654 44444455555543 345677777777777765 33344444444443 35
Q ss_pred CHHHHHHHHHHHHHcC
Q 009470 477 HWNNAYKYIREMIEEK 492 (534)
Q Consensus 477 ~~~~A~~~~~~~~~~~ 492 (534)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6777777777777655
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.39 E-value=0.097 Score=38.34 Aligned_cols=141 Identities=13% Similarity=0.182 Sum_probs=91.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 009470 367 HCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQMFATSKSTDMV 446 (534)
Q Consensus 367 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 446 (534)
+.-.|.+++..+++.+.... .+..-||-++--....-+-+...+.++.+-. ..|. ..+++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcCc----------hhhhcHHHH
Confidence 44567777777777777765 2556666666655555555555555555432 1121 123344333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 009470 447 LKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQLRRAGQLQKHEELVEKMVD 526 (534)
Q Consensus 447 ~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 526 (534)
...+-.+ .-+...++..+..+...|+-+.-.++.+.+.+.+ ++++...-.+..+|.+.|...++-+++.++.+
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3333222 2234555667778888888888888888877754 67888888888999999999999999999988
Q ss_pred cCCC
Q 009470 527 RGFT 530 (534)
Q Consensus 527 ~g~~ 530 (534)
+|..
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 8863
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.54 E-value=0.27 Score=35.90 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 009470 293 VIDALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLG 352 (534)
Q Consensus 293 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g 352 (534)
.++.+.++|+-+.-.++++++.+.+ ++++...-.+..+|.+.|...++.+++.+..+.|
T Consensus 92 ALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 92 ALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3344444444444444444433322 3344444444444444444444444444444444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=3.1 Score=38.32 Aligned_cols=345 Identities=8% Similarity=-0.002 Sum_probs=181.3
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 009470 140 ARPEFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAVHAFNRMEEYGCAPDKI 219 (534)
Q Consensus 140 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 219 (534)
+.++.+.....-..-+..+++.++++.....+. ..+.+...-.....+....|+.++|.+.+..+-..| ...+.
T Consensus 64 ~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~ 137 (450)
T d1qsaa1 64 ANPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPN 137 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCT
T ss_pred HCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCch
Confidence 344444444455556677778888776554332 224456666677777888888888888777665544 22333
Q ss_pred HHHHHHHHHHhcC------------------CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 009470 220 AFSIVISILCRKR------------------RASEAQSFFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFREMKMA 281 (534)
Q Consensus 220 ~~~~ll~~~~~~g------------------~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 281 (534)
.+..+...+.+.| +...|..+...+... .......++........+.. . ....
T Consensus 138 ~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~---~~~~~~a~~~l~~~p~~~~~---~---~~~~ 208 (450)
T d1qsaa1 138 ACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD---YQTIASAIISLANNPNTVLT---F---ARTT 208 (450)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG---GHHHHHHHHHHHHCGGGHHH---H---HHHS
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh---HHHHHHHHHHHHhChHhHHH---H---HhcC
Confidence 4444444443333 333333333222111 12222333333222221111 1 1111
Q ss_pred CCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHcCChhHHHHHHHHHHHcCCCC
Q 009470 282 GIQPNVYTYSIVIDALCR--CGQITRAHDVFAEMLEVGCEPNSITFNNLMRVH----VKASRTEKVLQVYNQMKRLGCEA 355 (534)
Q Consensus 282 g~~p~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~g~~~ 355 (534)
..+......+..++.+ ..+.+.|..++......... +...+..+-... ...+..+.+..++......+ .
T Consensus 209 --~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~ 283 (450)
T d1qsaa1 209 --GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q 283 (450)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C
T ss_pred --CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--c
Confidence 1233333333333333 24667777777776654322 222222222222 23455666777776665553 3
Q ss_pred ChhhHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 009470 356 DTITYNFLIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDVNGAHRMYGKMKDLKCEPNTVTYNILMQ 435 (534)
Q Consensus 356 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 435 (534)
+.......+......+++..+...++.|.... .......--+..++...|+.++|...|..+.. .++ -|..|..
T Consensus 284 ~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa 357 (450)
T d1qsaa1 284 STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA 357 (450)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH
Confidence 44444445555666778888888877765432 22334445566777788888888888887764 233 2333322
Q ss_pred HHHhcCC-HHHHHHHHHHHHHCCC--CCC-HHH---HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 009470 436 MFATSKS-TDMVLKLKKEMEENEV--EPN-VNT---YRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQQL 508 (534)
Q Consensus 436 ~~~~~g~-~~~a~~l~~~m~~~~~--~p~-~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 508 (534)
. +.|. +.- ....+ .+. ... -..-+..+...|+..+|...+..+.+. .+......+....
T Consensus 358 ~--~Lg~~~~~--------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~----~~~~~~~~la~lA 423 (450)
T d1qsaa1 358 Q--RIGEEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS----KSKTEQAQLARYA 423 (450)
T ss_dssp H--HTTCCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred H--HcCCCCCC--------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC----CCHHHHHHHHHHH
Confidence 1 1121 100 00000 000 000 112355677899999999999988763 3455677788888
Q ss_pred HHcCCHHHHHHHHHHH
Q 009470 509 RRAGQLQKHEELVEKM 524 (534)
Q Consensus 509 ~~~g~~~~a~~~~~~~ 524 (534)
.+.|..+.|+....+.
T Consensus 424 ~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 424 FNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHCCChhHHHHHHHHH
Confidence 9999999999877664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.00 E-value=0.73 Score=33.75 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHH
Q 009470 424 EPNTVTYNILMQMFATSK---STDMVLKLKKEMEENEVEPN-VNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSS 499 (534)
Q Consensus 424 ~p~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 499 (534)
.+...+--....++.+.. +.++++.++++..+.+ +.+ ...+-.+.-+|.+.|++++|.++++.+++ +.|+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~---ieP~n~ 107 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---HERNNK 107 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc---cCCCcH
Confidence 355556556666666654 4567888888887643 333 34556677788889999999999999888 456654
Q ss_pred HHH
Q 009470 500 VYE 502 (534)
Q Consensus 500 ~~~ 502 (534)
-..
T Consensus 108 qA~ 110 (124)
T d2pqrb1 108 QVG 110 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.77 E-value=1.1 Score=30.80 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 009470 198 LAAEAVHAFNRMEEYGCAPDKIAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVR 260 (534)
Q Consensus 198 ~~~~A~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 260 (534)
+.-++.+.++.+....+.|++.+....+++|-+.+++..|.++|+.++.+...+...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344566666666667777888888888888888888888888888777665544555555443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.11 E-value=2.8 Score=28.78 Aligned_cols=63 Identities=11% Similarity=0.187 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 009470 442 STDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREMIEEKCLKPGSSVYEMVLQ 506 (534)
Q Consensus 442 ~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 506 (534)
+.-++.+-++.+....+.|+.....+.+++|.+.+++..|+++|+....+. .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 344555666666666777888888888888888888888888887776654 234556665554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=83.77 E-value=16 Score=33.24 Aligned_cols=318 Identities=8% Similarity=0.026 Sum_probs=179.2
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHcC-------
Q 009470 143 EFVHSPDLYHEMINLAGKVRQFDLAWHFIDLMKSRNVEITVDTFSILVRRYVRAGLAAEAV--HAFNRMEEYG------- 213 (534)
Q Consensus 143 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~--~~~~~m~~~g------- 213 (534)
..+.+...-.....+..+.|+.+.|...+..+-..|. .....+..+...+...|...... +-+..+...|
T Consensus 97 ~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~ 175 (450)
T d1qsaa1 97 EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTV 175 (450)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHH
Confidence 3455777777788888899999998887776655442 22334455555554444332111 1222222221
Q ss_pred ----CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCC
Q 009470 214 ----CAPDK-IAFSIVISILCRKRRASEAQSFFDSLKDKFEPDVIVYTNLVRGWCR--AGNISEAERVFREMKMAGIQPN 286 (534)
Q Consensus 214 ----~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~ 286 (534)
++++. ......+.... +...+...... .+.+......+..++.+ ..+.+.|..++......... +
T Consensus 176 l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~ 247 (450)
T d1qsaa1 176 LAGQMPADYQTIASAIISLAN---NPNTVLTFART----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-N 247 (450)
T ss_dssp HHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-C
T ss_pred HHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-c
Confidence 11111 12222222221 12222222111 22333333333444333 35788899998888664322 2
Q ss_pred HHHHHHHHH----HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 009470 287 VYTYSIVID----ALCRCGQITRAHDVFAEMLEVGCEPNSITFNNLMRVHVKASRTEKVLQVYNQMKRLGCEADTITYNF 362 (534)
Q Consensus 287 ~~~~~~ll~----~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 362 (534)
...+..+-. .+...+..+.+...+......+ .+.......+......+++..+...+..|.... .......--
T Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW 324 (450)
T d1qsaa1 248 EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYW 324 (450)
T ss_dssp HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHH
Confidence 222322222 2234567788888888777664 345555556667778899999999998875432 233445566
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHH-H---HHHHHHHH
Q 009470 363 LIDCHCKDGKLEDAIKVLNSMVRKGCNPNASTFNMIFRCISKLGDV-NGAHRMYGKMKDLKCEPNTV-T---YNILMQMF 437 (534)
Q Consensus 363 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~-~---~~~li~~~ 437 (534)
+..++...|+.++|...|..+... ++ |..++.+- +.|.. .-.. ......+... . -..-+..+
T Consensus 325 ~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~~~~------~~~~~~~~~~~~~~~~~~ra~~L 391 (450)
T d1qsaa1 325 QADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYELKI------DKAPQNVDSALTQGPEMARVREL 391 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCCCCC------CCCCSCCCCHHHHSHHHHHHHHH
T ss_pred HHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCCCCc------CCCCccHHHhhhcChHHHHHHHH
Confidence 788999999999999999998753 33 43333321 22221 0000 0000000100 0 11234567
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 009470 438 ATSKSTDMVLKLKKEMEENEVEPNVNTYRILITMYCGMGHWNNAYKYIREM 488 (534)
Q Consensus 438 ~~~g~~~~a~~l~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 488 (534)
...|....|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 392 ~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 392 MYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 7889999999999988764 25556677788889999999999877655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.26 E-value=7.1 Score=28.23 Aligned_cols=20 Identities=5% Similarity=-0.107 Sum_probs=8.4
Q ss_pred HHHHcCChhHHHHHHHHHHH
Q 009470 331 VHVKASRTEKVLQVYNQMKR 350 (534)
Q Consensus 331 ~~~~~g~~~~a~~~~~~~~~ 350 (534)
+|.+.|++++|.+.++.+.+
T Consensus 82 ~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 82 GCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHc
Confidence 34444444444444444433
|