Citrus Sinensis ID: 009482

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
Protein Sequence
MEDDEMNSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVSSEPLEENLFSDLTLQLQTQPQSSPSITYTKTKSSRKKKRAAGLRIGYGRDTTPHSSSAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISVPVVVNEINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQLFYGI
Secondary Structure (PSIPRED)
cccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHccEEEEcccccccHHHcccccccccccccccccccccccccHHHHHcccccccccHHHccccccccccccccccccccccccccHHHHHHcccEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHEccc
Coil and Loop (DISEMBL)
MEDDEMnslfegmvlftpsqlaaeqsleeddvpkanpnpnksespaksndidTCIEAavssepleenlfSDLTLqlqtqpqsspsitytktkssRKKKRAAglrigygrdttphsssapddddagddddvtctideadvdaeassknsyssisvpvvvneinnndphqRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHfsadasnsADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQLFYGI
Flexible Loop (DISEMBL)
MEDDEMNSLFEGMVLFTPSQLAAEQSLeeddvpkanpnpnksespaksndidTCIEAAVSSEPLEENLFSDLTLqlqtqpqsspsitytktkssrkkkraaglrigygrdttphsssapddddagddDDVTCTIDEAdvdaeassknsyssisVPVVVNEINNNDPHQRFEYLRSVISDKLNRARELAasvsaarkdsirrrrkaaddvelaslrhsqlEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLnnsiehsveddlrEKEILYKKKDILTNELQKLLALVRDkekeiaendsniravEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKflndevdrgtklkelarvsadeakeyweVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQLFYGI
Low Complexity Region (SEG)
MEDDEMNSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVSSEPLEENLFSDltlqlqtqpqsspsITYtktkssrkkkraaGLRIGYGRdttphsssapddddagddddvtctideadVDAEASSKNSYSSISVPVVVNEINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLdeaceaedfeaaQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQLFYGI
Disordered region (IsUnstruct)
*********************************************************************************************************************************************************VPVVVNEINN****QRFEYLRSVI***********************************************************RISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHF***********************************RKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDK***I*****NIRAVEERISIVVSDFQEYQSSINAKYDSLQSII****************************************EAKEYWEVVELRRS****************************************************
Disordered Region (DISOPRED)
******NSLFEGMVLF****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FTSQLFYGI
Disordered Region (DISEMBL)
MEDDEMNSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVSSEPLEENLFSDLTLQL*************************GLRIGYGRD****************DDDVTCTIDEADVD*********SSISVPVVVNEINNNDPHQRFEYLRSVISDKLNRARE*********************DVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQLFYGI
Disordered Region (DISPRO)
*****MNSLFEGMVLFTPSQLA***************************************EPLEENLFSDLTLQLQ********************************D*******************************************VPVVVNEINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQLFYGI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDDEMNSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVSSEPLEENLFSDLTLQLQTQPQSSPSITYTKTKSSRKKKRAAGLRIGYGRDTTPHSSSAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISVPVVVNEINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDxxxxxxxxxxxxxxxxxxxxxEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQVNFTSQLFYGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
224061803	737	predicted protein [Populus trichocarpa]	0.958	0.693	0.542	1e-141
225457725	753	PREDICTED: uncharacterized protein LOC10	0.954	0.675	0.510	1e-135
147794804	717	hypothetical protein VITISV_028558 [Viti	0.958	0.712	0.510	1e-135
255539396	742	conserved hypothetical protein [Ricinus	0.979	0.703	0.526	1e-133
297745641	752	unnamed protein product [Vitis vinifera]	0.851	0.603	0.552	1e-131
15238694	736	uncharacterized protein [Arabidopsis tha	0.938	0.679	0.456	1e-110
358343883	779	Photosystem II CP47 chlorophyll apoprote	0.960	0.657	0.463	1e-110
297812709	724	hypothetical protein ARALYDRAFT_489361 [	0.941	0.693	0.462	1e-109
293333886	775	uncharacterized protein LOC100383143 [Ze	0.939	0.646	0.397	2e-80
242079971	784	hypothetical protein SORBIDRAFT_07g02733	0.945	0.642	0.388	3e-80

>gi|224061803|ref|XP_002300606.1| predicted protein [Populus trichocarpa] gi|222842332|gb|EEE79879.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 299/551 (54%), Positives = 386/551 (70%), Gaps = 40/551 (7%)

Query: 2   EDDEMNSLFEGMVLFTPSQLAAEQSLEEDDV--PKANPNPNKSESPAKSNDIDTCIEAAV 59
           E+D M+SLFEGMVLFTP Q   EQ L    V  P  +P  ++S+    +N  +T  EA  
Sbjct: 3   EEDGMDSLFEGMVLFTPHQFTDEQ-LHRQPVEDPLKHPEESQSDDTVNNNSNNTLAEAGA 61

Query: 60  S------------SEPLEENLFSDL-TLQLQTQPQS------SPSITY---TKTKSSRKK 97
                        SEPL+ENLFS   TL              SPS T    T+  S+ +K
Sbjct: 62  GAGAEEASHHQQLSEPLDENLFSSFQTLTQSQSQSQSQSDPISPSPTTDPTTQISSTSRK 121

Query: 98  KRAAGLRIGYGRDTTPHSSSAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISVPVV 157
           KR A  RIGY RD T      PD ++  DDD       +AD + + +S++  S ++ P+ 
Sbjct: 122 KRRASFRIGYARDRT----YPPDLNNHNDDDG-----HDADKNEDDASQSPSSIVANPID 172

Query: 158 VN----EINN--NDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVEL 211
            +    +  N  ++   +F++L+S IS+KL+ AR L ASVS+ARKDSI RRRKAA+D+ L
Sbjct: 173 TSLSDSQFKNKKDETLSQFDHLKSQISEKLDAARLLIASVSSARKDSISRRRKAAEDLNL 232

Query: 212 ASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMY 271
           AS  H+ LE QL+ ACEAEDFE A+RISD LAAAE  +Q+LL+AL+DAEAHCD IDSKMY
Sbjct: 233 ASANHAHLEHQLEVACEAEDFETAERISDSLAAAEKEKQTLLLALKDAEAHCDTIDSKMY 292

Query: 272 DVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIEL 331
             L SQIAAEQ+CASLL HF+ DA N+AD  LK A+ LSS+E++ W +S++ LE +KIEL
Sbjct: 293 HALDSQIAAEQECASLLQHFAKDAENNADLVLKNAQILSSKEIDDWFSSSQVLEAKKIEL 352

Query: 332 EIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEN 391
           +IESH +NEAR+ +++SI+HSVEDD  EKEIL KKKD+LT EL  LL LV+ KE EI EN
Sbjct: 353 DIESHFINEARSRVSDSIQHSVEDDRNEKEILCKKKDVLTKELDHLLDLVKQKEMEIDEN 412

Query: 392 DSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDE 451
           D+ I+AV+ERI++VVSDF+E QSSINAK+D LQS +SQ++L+SEA+S K+KEID+FL +E
Sbjct: 413 DTRIKAVDERIAVVVSDFKEIQSSINAKFDDLQSRLSQMHLQSEALSTKRKEIDRFLTEE 472

Query: 452 VDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQ 511
            +RG KL+EL RVS DEAK Y EVV LR+SL SSILKSRE+K++LAKTEE+L+ +VQ LQ
Sbjct: 473 EERGAKLRELVRVSKDEAKVYQEVVVLRKSLKSSILKSREEKLRLAKTEEELTLDVQMLQ 532

Query: 512 QEASAARASLQ 522
           QE SAAR SLQ
Sbjct: 533 QEVSAARGSLQ 543

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457725|ref|XP_002274237.1| PREDICTED: uncharacterized protein LOC100246165 [Vitis vinifera]

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 291/570 (51%), Positives = 383/570 (67%), Gaps = 61/570 (10%)

Query: 1   MEDDEMNSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVS 60
           +E DEM+SLFEGM+LF PSQ  A+Q     D    N +P     P           ++ S
Sbjct: 3   LEADEMDSLFEGMILFNPSQTLADQ-----DGVDGNCDP----IPLTDASASL---SSSS 50

Query: 61  SEPLEENLFSDLTLQLQTQ---PQSSPSITYTKTKSSR-----------KKKRAAGLRIG 106
           S+PL+ENLFSDLTL    Q   P   PS T   T ++R           +KK+ A LRIG
Sbjct: 51  SQPLDENLFSDLTLITPNQFRNPLLDPSPTPISTSTTREETPSVSRQISRKKKRASLRIG 110

Query: 107 YGRDTTPHSS--------SAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISV---- 154
           YGRD+    S        S+P DD        +   DE  +D+  S   +  +I V    
Sbjct: 111 YGRDSLNQLSLVDDAEVQSSPSDDSHSQTKSFSLLPDET-LDSHPSPPTTSQAILVREDH 169

Query: 155 PVVVNEIN----------------------NNDPHQRFEYLRSVISDKLNRARELAASVS 192
            +V++++                       +      F+ +R++IS+KL+ AR+LAAS+S
Sbjct: 170 DLVLDDVQFKPFPQQNEQEQIQLEEEKTTCSTSTEANFDRVRAIISEKLHHARQLAASIS 229

Query: 193 AARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSL 252
           A+RKDS+RRRRKAA ++ LAS +  +LEK+L+EACEAEDFE A+R+S  LA AE  +Q+ 
Sbjct: 230 ASRKDSMRRRRKAAQNLNLASTKSMELEKELEEACEAEDFEMAERLSQSLAGAEKDKQAF 289

Query: 253 LIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312
           + ALRDAEA CDAIDSKM +VL  QI AE++C SLL+ F+ DA+N+A+   K+A+ LSS+
Sbjct: 290 IAALRDAEAECDAIDSKMQEVLERQITAEEECVSLLEQFATDAANNANEISKRAQFLSSK 349

Query: 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTN 372
           EM++W +STEALE RK+ELEIESHL+++ R +LN+SIEH+ ED+ RE+E L K+KD L +
Sbjct: 350 EMDQWFSSTEALEVRKLELEIESHLISDTRLLLNDSIEHAAEDERREREFLCKRKDTLMD 409

Query: 373 ELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNL 432
           EL+KLLALVR+KE EIAEND+NI+AV++RI+ VVS FQE   SIN KYD+LQS +SQ  L
Sbjct: 410 ELEKLLALVREKEDEIAENDANIKAVDKRIADVVSGFQEMHLSINMKYDNLQSSLSQTEL 469

Query: 433 ESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSRED 492
           ESEA+SMKKKEID  L++E +RG KL+ELAR+SADEAK Y EVV LR+S   SI+KSRED
Sbjct: 470 ESEALSMKKKEIDDLLSEEEERGAKLRELARISADEAKAYEEVVGLRKSFALSIVKSRED 529

Query: 493 KVKLAKTEEKLSAEVQTLQQEASAARASLQ 522
           K++LAKTEEKLS EVQ L+QE SAARASLQ
Sbjct: 530 KLRLAKTEEKLSEEVQILRQEVSAARASLQ 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794804|emb|CAN62587.1| hypothetical protein VITISV_028558 [Vitis vinifera]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 292/572 (51%), Positives = 384/572 (67%), Gaps = 61/572 (10%)

Query: 1   MEDDEMNSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVS 60
           +E DEM+SLFEGM+LF PSQ  A+Q     D    N +P     P           ++ S
Sbjct: 3   LEADEMDSLFEGMILFNPSQTLADQ-----DGVDGNCDP----IPLTDASASL---SSSS 50

Query: 61  SEPLEENLFSDLTLQLQTQ---PQSSPSITYTKTKSSR-----------KKKRAAGLRIG 106
           S+PL+ENLFSDLTL    Q   P   PS T   T ++R           +KK+ A LRIG
Sbjct: 51  SQPLDENLFSDLTLITPNQFRNPLLDPSPTPISTSTTREETPSVSRQISRKKKRASLRIG 110

Query: 107 YGRDTTPHSS--------SAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISVP--- 155
           YGRD+    S        S+P DD        +   DE  +D+  S   +  +I V    
Sbjct: 111 YGRDSLNQLSLVDDAEVQSSPSDDSHSQTKSFSLLPDET-LDSHPSPPTTSQAILVREDH 169

Query: 156 -VVVNEIN----------------------NNDPHQRFEYLRSVISDKLNRARELAASVS 192
            +V++++                       +      F+ +R++IS+KL+ AR+LAAS+S
Sbjct: 170 DLVLDDVQFKPFPQQNEQEQIQLEEEKTTCSTSTEANFDRVRAIISEKLHHARQLAASIS 229

Query: 193 AARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSL 252
           A+RKDSIRRRRKAA ++ LAS +  +LEK+L+EACEAEDFE A+R+S  LA AE  +Q+ 
Sbjct: 230 ASRKDSIRRRRKAAQNLNLASTKSMELEKELEEACEAEDFEMAERLSQSLAGAEKDKQAF 289

Query: 253 LIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE 312
           + ALRDAEA CDAIDSKM +VL  QI AE++C SLL+ F+ DA+N+A+   K+A+ LSS+
Sbjct: 290 IAALRDAEAECDAIDSKMQEVLERQITAEEECVSLLEQFATDAANNANEISKRAQFLSSK 349

Query: 313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTN 372
           EM++W +STEALE RK+ELEIESHL+++ R +LN+SIE + ED+ RE+E L K+KD L +
Sbjct: 350 EMDQWFSSTEALEVRKLELEIESHLISDTRLLLNDSIEXAAEDERREREFLCKRKDTLMD 409

Query: 373 ELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNL 432
           EL+KLLALVR+KE EIAEND+NI+AV++RI+ VVS FQE  SSIN KYD+LQS +SQ  L
Sbjct: 410 ELEKLLALVREKEDEIAENDANIKAVDKRIADVVSGFQEMHSSINMKYDNLQSSLSQTEL 469

Query: 433 ESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSRED 492
           ESEA+SMKKKEID  L++E +RG KL+ELAR+SADEAK Y EVV LR+S   SI+KSRED
Sbjct: 470 ESEALSMKKKEIDDLLSEEEERGAKLRELARISADEAKAYEEVVGLRKSFALSIVKSRED 529

Query: 493 KVKLAKTEEKLSAEVQTLQQEASAARASLQVN 524
           K++LAKTEEKLS EVQ L+QE SAARASLQ +
Sbjct: 530 KLRLAKTEEKLSEEVQILRQEVSAARASLQTS 561

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539396|ref|XP_002510763.1| conserved hypothetical protein [Ricinus communis] gi|223551464|gb|EEF52950.1| conserved hypothetical protein [Ricinus communis]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 288/547 (52%), Positives = 373/547 (68%), Gaps = 25/547 (4%)

Query: 1   MEDDEMNSLFEGMVLFTPSQLAAEQSLEEDDVPKA----------NPNPNKSESPAKSND 50
           ME D+++SLFEGMVLFTPSQL  ++  ++                + N +++E+P    +
Sbjct: 1   MEVDDLDSLFEGMVLFTPSQLDDDELQKQQQQQDDVRASAASTSDSFNESEAETPPACIN 60

Query: 51  IDTCI--EAAVSSEPLEENLFSDLTLQ-LQTQPQSSPSITYTKTKS--SRKKKRAAGLRI 105
            +T I  E     EPL+ENLFSDLTLQ L +Q    P  T   T    +RKKKRAA LRI
Sbjct: 61  ENTLITSENKPQQEPLDENLFSDLTLQTLSSQSHPIPDTTSPTTSRHVTRKKKRAASLRI 120

Query: 106 GYGRDTT----PHSSSAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSS------ISVP 155
           GY RD++    P    +P +DD   D         A +    S  ++ S       IS  
Sbjct: 121 GYARDSSSLDDPPYYPSPANDDHDHDHPSNLNHSPAPIPTPTSLADAQSESELELDISTS 180

Query: 156 VVVNEINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLR 215
                ++++    +F+ ++S IS KL  +R+ AASVSAARKD+I RRRKAA D+  AS  
Sbjct: 181 TPSVSVSDSQFDAQFDRIQSQISIKLQHSRQSAASVSAARKDAITRRRKAAQDLNSASAN 240

Query: 216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLV 275
           H  LE QL+ ACE+EDF+AAQRISD LAA++  +  LL AL+ AEA+CD +DSKM+DVL 
Sbjct: 241 HRDLELQLEAACESEDFDAAQRISDCLAASDKERLLLLTALKHAEAYCDTLDSKMHDVLN 300

Query: 276 SQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIES 335
           SQI AEQ+CA+LL  F+ DA   A+   +KA SLSS+EM++W + TEALE +KIEL+IES
Sbjct: 301 SQIVAEQECAALLSKFAKDAEFHANLVWEKARSLSSKEMDQWFSLTEALEAKKIELDIES 360

Query: 336 HLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNI 395
           H +N+AR  ++ SIEHSVED  +E+EILYKKKD+LT ELQKLLALV+ KE EIAEND+NI
Sbjct: 361 HFINDARLAVSYSIEHSVEDYRKEQEILYKKKDLLTKELQKLLALVKLKEMEIAENDTNI 420

Query: 396 RAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRG 455
           +AVEE+IS V+S F E QSSI++KYD LQS +SQ++L++EA+S K+KEIDKFL  E    
Sbjct: 421 KAVEEKISDVISGFHESQSSIDSKYDRLQSELSQMHLQTEALSTKRKEIDKFLAQEEGHE 480

Query: 456 TKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEAS 515
            KL+ELA +S  EAK Y EVVELR+SLM SILKS EDKV+LAKTEEKL  +VQ LQ + S
Sbjct: 481 AKLRELATLSEYEAKSYQEVVELRKSLMLSILKSTEDKVRLAKTEEKLIEDVQMLQHQVS 540

Query: 516 AARASLQ 522
           +ARASLQ
Sbjct: 541 SARASLQ 547

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745641|emb|CBI40806.3| unnamed protein product [Vitis vinifera]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/483 (55%), Positives = 347/483 (71%), Gaps = 29/483 (6%)

Query: 62  EPLEENLFSDLTLQLQTQ---PQSSPSITYTKTKSSR-----------KKKRAAGLRIGY 107
           +PL+ENLFSDLTL    Q   P   PS T   T ++R           +KK+ A LRIGY
Sbjct: 53  QPLDENLFSDLTLITPNQFRNPLLDPSPTPISTSTTREETPSVSRQISRKKKRASLRIGY 112

Query: 108 GRDTTPHSS--------SAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISVPVVVN 159
           GRD+    S        S+P DD        +   DE  +D+  S   +  +I      +
Sbjct: 113 GRDSLNQLSLVDDAEVQSSPSDDSHSQTKSFSLLPDET-LDSHPSPPTTSQAILTTCSTS 171

Query: 160 EINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQL 219
              N      F+ +R++IS+KL+ AR+LAAS+SA+RKDS+RRRRKAA ++ LAS +  +L
Sbjct: 172 TEAN------FDRVRAIISEKLHHARQLAASISASRKDSMRRRRKAAQNLNLASTKSMEL 225

Query: 220 EKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIA 279
           EK+L+EACEAEDFE A+R+S  LA AE  +Q+ + ALRDAEA CDAIDSKM +VL  QI 
Sbjct: 226 EKELEEACEAEDFEMAERLSQSLAGAEKDKQAFIAALRDAEAECDAIDSKMQEVLERQIT 285

Query: 280 AEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVN 339
           AE++C SLL+ F+ DA+N+A+   K+A+ LSS+EM++W +STEALE RK+ELEIESHL++
Sbjct: 286 AEEECVSLLEQFATDAANNANEISKRAQFLSSKEMDQWFSSTEALEVRKLELEIESHLIS 345

Query: 340 EARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVE 399
           + R +LN+SIEH+ ED+ RE+E L K+KD L +EL+KLLALVR+KE EIAEND+NI+AV+
Sbjct: 346 DTRLLLNDSIEHAAEDERREREFLCKRKDTLMDELEKLLALVREKEDEIAENDANIKAVD 405

Query: 400 ERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLK 459
           +RI+ VVS FQE   SIN KYD+LQS +SQ  LESEA+SMKKKEID  L++E +RG KL+
Sbjct: 406 KRIADVVSGFQEMHLSINMKYDNLQSSLSQTELESEALSMKKKEIDDLLSEEEERGAKLR 465

Query: 460 ELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARA 519
           ELAR+SADEAK Y EVV LR+S   SI+KSREDK++LAKTEEKLS EVQ L+QE SAARA
Sbjct: 466 ELARISADEAKAYEEVVGLRKSFALSIVKSREDKLRLAKTEEKLSEEVQILRQEVSAARA 525

Query: 520 SLQ 522
           SLQ
Sbjct: 526 SLQ 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238694|ref|NP_197889.1| uncharacterized protein [Arabidopsis thaliana] gi|20466600|gb|AAM20617.1| putative protein [Arabidopsis thaliana] gi|22136436|gb|AAM91296.1| putative protein [Arabidopsis thaliana] gi|332006013|gb|AED93396.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 254/556 (45%), Positives = 361/556 (64%), Gaps = 56/556 (10%)

Query: 4   DEMNSLFEGMVLFTP-SQLAAEQSLEEDDVPKANPNPNKSES-----PAKSNDIDTCIEA 57
           D+M+SLFEGM LFTP SQ + +  +     P  +     +E+     P++ +  +  +  
Sbjct: 5   DDMDSLFEGMELFTPASQFSGDSKV---SSPPQSEETKAAEATLITAPSQPDVTEATLIT 61

Query: 58  AVS----SEPLEENLFSDLTL--QLQTQPQ---------SSPSITYTKTKSSRKKKRAAG 102
           A S    +E L+ENLFSDLT+   +Q QP+          SP+  Y + + SR+KKRAAG
Sbjct: 62  ATSQPDITEALDENLFSDLTIVTPVQHQPEPMEAVITTHQSPAKNYGR-QVSRRKKRAAG 120

Query: 103 LRIGYGRDTTPHSSSAPDDDDAGD----------------DDDVTCTIDEADVDAEASSK 146
           LRIGYGR  T +     D+DDA                   D V    D  +        
Sbjct: 121 LRIGYGRHETNNLDE--DEDDAVSQQSDSVSQVSDSVSQISDSVAQVFDSGN-------- 170

Query: 147 NSYSSISVPVVVNEINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAA 206
               S+  PVV   + N     R E +++ I  KLNR+R+LAASV++ARK++IR++R+A+
Sbjct: 171 ---QSLDSPVVTVVVGNG--SSRLELVKAQIEAKLNRSRDLAASVTSARKNAIRKKRQAS 225

Query: 207 DDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAI 266
           +++ LAS  H +LEKQL+EA E EDF+AA+RIS+ LAA E  + +LL  LR AE+ CDAI
Sbjct: 226 ENLRLASTTHEELEKQLEEAIETEDFDAAERISESLAAKERDRLALLALLRQAESDCDAI 285

Query: 267 DSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEG 326
           +SKM +VL+SQIAAE++ A LL  F  DA N A + L+KAE+  S+EMEKW + +E +E 
Sbjct: 286 ESKMEEVLLSQIAAEEESACLLRSFGTDAENDAGSILEKAEAFYSDEMEKWHSCSEDVEV 345

Query: 327 RKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEK 386
           RK+EL+IES +V+  R  LN  +E SVE D++EKEIL KKK+ L NEL++LLALV+ KEK
Sbjct: 346 RKVELDIESVVVDNVRLSLNGILEGSVEQDMKEKEILQKKKEHLANELEELLALVKAKEK 405

Query: 387 EIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDK 446
           EI ENDS I AVEERI+ VV+ F+E Q+S++   + +Q+ +++++ E+E +S KKK++D+
Sbjct: 406 EIDENDSQIEAVEERINNVVTGFKELQTSMDKMLNDVQAGLTEVDKETEDLSRKKKDVDE 465

Query: 447 FLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAE 506
           F+  E +RG KL++LARVSADEA EY EV++LR+ LMS + K+RE++ KL   EEKLS E
Sbjct: 466 FMTSEKERGAKLRDLARVSADEACEYEEVIKLRKGLMSYVSKTREERAKLVNIEEKLSEE 525

Query: 507 VQTLQQEASAARASLQ 522
           VQ LQ+E S+ R  L+
Sbjct: 526 VQKLQEEVSSTRELLK 541

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343883|ref|XP_003636025.1| Photosystem II CP47 chlorophyll apoprotein [Medicago truncatula] gi|355501960|gb|AES83163.1| Photosystem II CP47 chlorophyll apoprotein [Medicago truncatula]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 247/533 (46%), Positives = 347/533 (65%), Gaps = 21/533 (3%)

Query: 5   EMNSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVSSEPL 64
           +M+SLFEGMVLF P+    E + +E +      N +     A S+    C      S+PL
Sbjct: 6   DMDSLFEGMVLFNPAGQIEEPAGKEKEEENQQLNQSDDAPAAASSSSALC------SQPL 59

Query: 65  EENLFSDLTLQLQTQPQSSPSI---TYTKTKSSRKKKRAAGLRIGYGRDTTPHSSSAPDD 121
           +EN+FSDLTL +    Q+   +     + +   +++++ +GLRIGYGRD         D 
Sbjct: 60  DENIFSDLTLVVVDPIQNDHDLLQSQSSSSHQHQRRRKRSGLRIGYGRDRDTTVDVDVDV 119

Query: 122 DDAGDDDDVTCT------IDEADVDAEASSKNSYSSISVPVVVNEINN------NDPHQR 169
           D   D             I ++ V       +S  + +V V   E+ N      +D  + 
Sbjct: 120 DLDVDPSPSPPPPPPPPHIPDSLVSTVTQQPSSDVAPAVSVSATELKNESRDASHDEEET 179

Query: 170 FEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEA 229
           F  +R  I +KL+ AR+L  S S+ARKD+IR RRKA  +  LASL++ +LE QL++ACEA
Sbjct: 180 FRKIRETIHEKLSHARQLLNSASSARKDAIRSRRKAFQNANLASLKYMELENQLEQACEA 239

Query: 230 EDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLD 289
           EDFE A+ +S  L+A+E  +Q    +LR A+A  DA+D K+   L S IAAE++ A+LL 
Sbjct: 240 EDFETAEMVSQHLSASEKDKQICTESLRQADAFIDALDLKLQHALDSHIAAEEESATLLH 299

Query: 290 HFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSI 349
           H++ +A N+AD+ +KKA SL S+E+E+W +S+EALE +K+ELEIESH ++EA   LNN+I
Sbjct: 300 HYATNAVNNADSAMKKATSLHSKEIEQWFSSSEALEVKKMELEIESHFISEAHTELNNNI 359

Query: 350 EHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDF 409
           EHS+EDD +EKEIL K+K +L +EL+KLLALV+ KEKEIA+NDS+++AVE +I+ VVS F
Sbjct: 360 EHSIEDDKKEKEILCKRKSVLMDELEKLLALVKQKEKEIADNDSDLKAVEHKINNVVSGF 419

Query: 410 QEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEA 469
           +E QS+I  KY  LQS+++Q+ LE+E +S+KK +ID  L  E   G KL+E ARVS +EA
Sbjct: 420 EEIQSTIEVKYGKLQSVLAQVKLETETLSLKKDKIDNLLVQEERMGAKLREFARVSEEEA 479

Query: 470 KEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQ 522
           K Y E+V+LRRSLMSSILKS EDK++L   EEKLS EV+  QQE SAAR SLQ
Sbjct: 480 KGYREIVKLRRSLMSSILKSGEDKLRLTNNEEKLSGEVKLFQQEVSAARGSLQ 532

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812709|ref|XP_002874238.1| hypothetical protein ARALYDRAFT_489361 [Arabidopsis lyrata subsp. lyrata] gi|297320075|gb|EFH50497.1| hypothetical protein ARALYDRAFT_489361 [Arabidopsis lyrata subsp. lyrata]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/541 (46%), Positives = 362/541 (66%), Gaps = 39/541 (7%)

Query: 4   DEMNSLFEGMVLFTP-SQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVSSE 62
           D+M+SLFEGM LFTP ++LA       D+   + P    +E+ A    + T       +E
Sbjct: 5   DDMDSLFEGMELFTPVAELAG------DNKVSSPPQSGNNETKAAEATLITAPSQPDMTE 58

Query: 63  PLEENLFSDLTL--QLQTQPQS--------SPSITYTKTKSSRKKKRAAGLRIGYGRDTT 112
            L+ENLFSDLT+   +Q QP+         SP+  Y + + SR+KKRAAGLRIGYGR  T
Sbjct: 59  ALDENLFSDLTIVTPVQHQPEPIEVVTTHPSPAKNYGR-QVSRRKKRAAGLRIGYGRHET 117

Query: 113 PHSSSAPDDDDAGDDDDVTCTIDEADVDAEASSKNSYSSISVPVVVNEINNNDPHQ---- 168
            +           D+D+      ++D  ++ S   +  S SV  V++  N +        
Sbjct: 118 NNL----------DEDEDDSVSQQSDSVSQVSDSVTQVSDSVAQVIDSGNQSLDSPVVSV 167

Query: 169 -------RFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEK 221
                  R E +++ I  KLNRA ELAASV++ARK++IR+RR+A++++ LAS  H +LEK
Sbjct: 168 VVGNGSSRLELVKAQIEAKLNRACELAASVTSARKNAIRKRRQASENLRLASTTHEELEK 227

Query: 222 QLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAE 281
           QL+EA EAEDF+AA+RIS+ LAA E  + +LL  LR AE+ CDAI+SKM +VL+SQIAAE
Sbjct: 228 QLEEAIEAEDFDAAERISESLAAKERDRLALLALLRQAESDCDAIESKMEEVLLSQIAAE 287

Query: 282 QDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEA 341
           ++ +SLL  F  DA N A + L+KAE+  S+EMEKW + +E +E RK+EL+IES +V+  
Sbjct: 288 EESSSLLRRFCTDAENDAGSILEKAEAFYSDEMEKWHSCSEDVEVRKVELDIESVVVDNV 347

Query: 342 RAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEER 401
           R  LN ++E SVE D++EKE+L KK + L+NEL++LLALV+ KEKEI END  I AVEER
Sbjct: 348 RLSLNGTLEGSVEQDMKEKEMLRKKNEHLSNELEELLALVKAKEKEIDENDLKIEAVEER 407

Query: 402 ISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKEL 461
           I+ VV+ ++E Q+S++   + +Q+ ++Q++ E+E +S KKK++D+F+  E +RG KL++L
Sbjct: 408 INNVVTGYKELQTSMDKMVNDVQAGLTQIDKETEDLSRKKKDVDEFMTSEKERGAKLRDL 467

Query: 462 ARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASL 521
           ARVSADEA EY +V++LR+ LM+ + K+RE++ KL   EEKLS EVQ LQ+E S+ R SL
Sbjct: 468 ARVSADEACEYDKVIKLRKDLMAYVSKTREERAKLVNIEEKLSEEVQKLQEEVSSTRESL 527

Query: 522 Q 522
           +
Sbjct: 528 K 528

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293333886|ref|NP_001169280.1| uncharacterized protein LOC100383143 [Zea mays] gi|224028347|gb|ACN33249.1| unknown [Zea mays] gi|413921554|gb|AFW61486.1| hypothetical protein ZEAMMB73_345573 [Zea mays]

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 231/581 (39%), Positives = 325/581 (55%), Gaps = 80/581 (13%)

Query: 7   NSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVSSEPLEE 66
           +SLFEGMVLF P   AAE     D VP   P P  +   A   D D    A+ +  PL+E
Sbjct: 15  SSLFEGMVLFAPEPAAAE-----DSVPTPAPVPELT--SAARPDADA---ASSAPPPLDE 64

Query: 67  NLFSDLTLQLQTQPQS-------------------------SPSITYTKTKSS-RKKKRA 100
           +LFSDLTL    +P S                         +  ++   + SS RKKKRA
Sbjct: 65  DLFSDLTLLAPQEPLSLEQPPPPPQGEDRSHAALAPAPPAAAAELSRQPSSSSLRKKKRA 124

Query: 101 AGLRIGYGR--------------------------DTTPHSSSAPDDDDAGDDD-DVTCT 133
             +RIGYGR                          D +PH++     D   D   DV   
Sbjct: 125 --VRIGYGRLPQPAPPSPPASAAAAAISASSISFLDASPHAAVTRILDQLPDRQVDVYAN 182

Query: 134 IDEADVDAEASSKNSYSSISVPVVVNEINNNDPH------------QRFEYLRSVISDKL 181
             EA  +A A      SS  V  V  E +                 +R   LRS IS KL
Sbjct: 183 GYEAHAEAVAVD---TSSPRVEAVATEDDGGGKEDEDAAVVALGVEERLALLRSQISSKL 239

Query: 182 NRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDL 241
           +  ++ AA+V+A R+    RRRK A++    +  H  LE++L+EACEAEDFE A+RISD 
Sbjct: 240 DSIQQTAAAVAAKRRLLAGRRRKVAEEAASVASGHKDLERELEEACEAEDFERAERISDS 299

Query: 242 LAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADT 301
           LA  E  +  L  ALR AE   D++DS++ +VL S+IAAE++ A+L++ F+ DA+  A++
Sbjct: 300 LATLEKEKDRLSTALRGAELDYDSVDSELQEVLESRIAAEEEAAALMEQFAKDATEHANS 359

Query: 302 FLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKE 361
             + A+ LSS+E+E+W  S E LE +K+E+E+E+ LV EAR+ L  SIEH VE+D  EK+
Sbjct: 360 ASEHAQELSSKEIEEWQTSLELLETKKLEMEVETRLVLEARSGLEGSIEHLVEEDKLEKD 419

Query: 362 ILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYD 421
           +L KK +ILT EL +LL LVR KE EIAEN++ I  V+ERIS VVS F   QS I+ K  
Sbjct: 420 MLSKKGEILTKELAELLELVRLKEAEIAENNARIHEVQERISAVVSRFHGSQSDIDLKLS 479

Query: 422 SLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRS 481
           SL+   S+++LE+EA+ +KK EIDKF+     + ++L+++    + EAK   + VE+RR 
Sbjct: 480 SLKEDQSKVDLETEALLLKKNEIDKFITLTDQKDSELRDIIGACSSEAKACRQSVEIRRK 539

Query: 482 LMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQ 522
           L SSILKSRED++ L K EE++   +Q  +Q+ + AR++LQ
Sbjct: 540 LASSILKSREDRIGLLKMEEEILQVIQMQRQKITDARSTLQ 580

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242079971|ref|XP_002444754.1| hypothetical protein SORBIDRAFT_07g027330 [Sorghum bicolor] gi|241941104|gb|EES14249.1| hypothetical protein SORBIDRAFT_07g027330 [Sorghum bicolor]

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 227/585 (38%), Positives = 324/585 (55%), Gaps = 81/585 (13%)

Query: 8   SLFEGMVLFTPSQLAAEQSLEEDDVPKANPNPNKSESPAKSNDIDTCIEAAVSSEPLEEN 67
           SLFEGMVLF P   AAE S+           P  +   A +         + +  PL+E+
Sbjct: 16  SLFEGMVLFAPEPTAAEDSVPAPAPAPVPELPPAALPDADAA--------SSAPPPLDED 67

Query: 68  LFSDLTLQLQTQPQS----------------------------SPSITYTKTKSS-RKKK 98
           LFSDLTL    +P S                            + +++   + SS RKKK
Sbjct: 68  LFSDLTLLAPQEPLSLEQQPPPPLPPQGEDRSHTAVVPAAPAAATALSRQPSSSSLRKKK 127

Query: 99  RAAGLRIGYGR------------------------------DTTPHSSS------APDDD 122
           RA  +RIGYGR                              D +PH ++       PD  
Sbjct: 128 RA--VRIGYGRSPQPAPPSPPATVRASAAAAAISASSIAFLDASPHPAATRSLDQVPDRQ 185

Query: 123 DAGDDDDVTCTIDEADVD-----AEASSKNSYSSISVPVVVNEINNNDPHQRFEYLRSVI 177
             G  +      +  DVD      E ++K+             +      +R   LRS I
Sbjct: 186 VDGYANGYEAHAEAVDVDTNSPRVEEAAKDEDDDGEEDGDTG-VAALGIVERLALLRSQI 244

Query: 178 SDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQR 237
           S KL+  ++ AA+V+A R+    RRRK A++    +  H  +E++L+EACEAEDFE A+R
Sbjct: 245 SGKLDTIQQRAAAVAAKRRLLAGRRRKVAEEAASVASSHKDMERELEEACEAEDFEKAER 304

Query: 238 ISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASN 297
           ISD LAA E  +  LL  LRDAE   D++DS++ +VL S+IAAE++ ASLL+ F+ DA+ 
Sbjct: 305 ISDSLAALEKEKDRLLTVLRDAELDYDSVDSELQEVLESRIAAEEEAASLLEQFAKDATE 364

Query: 298 SADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDL 357
            A++  K+AE LS++E+E W  S E LE +K+E+E+E+ LV EAR+ L  SIEH VE+D 
Sbjct: 365 HANSESKQAEELSTKEIEGWQTSMELLETKKLEMEVETQLVLEARSGLEGSIEHLVEEDK 424

Query: 358 REKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSIN 417
            EK+IL KK +ILT EL +LL  VR KE EIAEN++ I  V+ERIS VVS F   QS I+
Sbjct: 425 LEKDILSKKGEILTKELAELLEFVRLKEAEIAENNARIHQVQERISAVVSKFHGSQSDID 484

Query: 418 AKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVE 477
            K +SL+   S+++LE+EA+ +KK EIDKF++    + ++L+E+    + EAK   + VE
Sbjct: 485 LKLNSLKEAQSKVDLETEALVLKKNEIDKFISLSEQKDSELREIIGACSSEAKTCQQSVE 544

Query: 478 LRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQ 522
           +RR L SSILKSRED++ L K EE++  E+Q L+Q+ + AR +LQ
Sbjct: 545 IRRKLASSILKSREDRIGLLKMEEEILQEIQMLRQKITDARTTLQ 589

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	533
TAIR|locus:2179305	736	AT5G25070 "AT5G25070" [Arabido	0.786	0.569	0.462	8.7e-98
ZFIN|ZDB-GENE-030131-731	904	hmmr "hyaluronan-mediated moti	0.414	0.244	0.255	9.2e-09
ZFIN|ZDB-GENE-100917-2	4530	plecb "plectin b" [Danio rerio	0.647	0.076	0.219	1.3e-08
UNIPROTKB|P35580	1976	MYH10 "Myosin-10" [Homo sapien	0.609	0.164	0.242	3.1e-08
UNIPROTKB|F8W6L6	1992	MYH10 "Myosin-10" [Homo sapien	0.609	0.163	0.242	3.1e-08
UNIPROTKB|Q5EE04	1997	TPR "TPR" [Xenopus laevis (tax	0.666	0.177	0.227	3.1e-08
MGI|MGI:1930780	1976	Myh10 "myosin, heavy polypepti	0.609	0.164	0.239	6.5e-08
ZFIN|ZDB-GENE-030131-8984	4762	pleca "plectin a" [Danio rerio	0.654	0.073	0.206	1e-07
UNIPROTKB|F6UV28	2127	TPR "Uncharacterized protein"	0.703	0.176	0.231	1.2e-07
UNIPROTKB|E2QSE6	2366	TPR "Uncharacterized protein"	0.703	0.158	0.231	1.3e-07

TAIR|locus:2179305 AT5G25070 "AT5G25070" [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 8.7e-98, Sum P(2) = 8.7e-98
 Identities = 196/424 (46%), Positives = 282/424 (66%)

Query:   102 GLRIGYGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDAEASSK---NSYSSISVPVVV 158
             GLRIGYGR                               +++ ++   +   S+  PVV 
Sbjct:   120 GLRIGYGRHETNNLDEDEDDAVSQQSDSVSQVSDSVSQISDSVAQVFDSGNQSLDSPVVT 179

Query:   159 NEINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQ 218
               + N     R E +++ I  KLNR+R+LAASV++ARK++IR++R+A++++ LAS  H +
Sbjct:   180 VVVGNGS--SRLELVKAQIEAKLNRSRDLAASVTSARKNAIRKKRQASENLRLASTTHEE 237

Query:   219 LEKQLXXXXXXXXXXXXQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQI 278
             LEKQL            +RIS+ LAA E  + +LL  LR AE+ CDAI+SKM +VL+SQI
Sbjct:   238 LEKQLEEAIETEDFDAAERISESLAAKERDRLALLALLRQAESDCDAIESKMEEVLLSQI 297

Query:   279 AAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLV 338
             AAE++ A LL  F  DA N A + L+KAE+  S+EMEKW + +E +E RK+EL+IES +V
Sbjct:   298 AAEEESACLLRSFGTDAENDAGSILEKAEAFYSDEMEKWHSCSEDVEVRKVELDIESVVV 357

Query:   339 NEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAV 398
             +  R  LN  +E SVE D++EKEIL KKK+ L NEL++LLALV+ KEKEI ENDS I AV
Sbjct:   358 DNVRLSLNGILEGSVEQDMKEKEILQKKKEHLANELEELLALVKAKEKEIDENDSQIEAV 417

Query:   399 EERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKL 458
             EERI+ VV+ F+E Q+S++   + +Q+ +++++ E+E +S KKK++D+F+  E +RG KL
Sbjct:   418 EERINNVVTGFKELQTSMDKMLNDVQAGLTEVDKETEDLSRKKKDVDEFMTSEKERGAKL 477

Query:   459 KELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAAR 518
             ++LARVSADEA EY EV++LR+ LMS + K+RE++ KL   EEKLS EVQ LQ+E S+ R
Sbjct:   478 RDLARVSADEACEYEEVIKLRKGLMSYVSKTREERAKLVNIEEKLSEEVQKLQEEVSSTR 537

Query:   519 ASLQ 522
               L+
Sbjct:   538 ELLK 541

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-030131-731 hmmr "hyaluronan-mediated motility receptor (RHAMM)" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 9.2e-09, P = 9.2e-09
 Identities = 63/247 (25%), Positives = 119/247 (48%)

Query:   294 DASNSADTFLK-----KAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEAR-AVLNN 347
             DA +   +FL+     K + L ++ +E    +   L+ R  +LE + H    A+  +L N
Sbjct:   188 DAKDKELSFLQISSEGKVKVLETD-LETAKTTFRVLQDRNKDLE-DLHQETRAQNELLEN 245

Query:   348 SIE--HSVEDDLREK-EILYKKKDILTNELQKLLALVRDK---EKEIAENDSNIRAVEER 401
              ++  H++  +LRE+ + L    D    E+Q L   ++DK   E+ +++   N+  VE++
Sbjct:   246 EMDKLHNIIQELREEIKALQSYLDSANEEIQDLRIKLQDKSTMERRVSDAQENLSEVEQK 305

Query:   402 ISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKEL 461
             +    ++ QE Q ++  K D +Q    +L     A+  K+KEI++   D  +  + LKEL
Sbjct:   306 LEKCTAELQECQEALKVKEDEVQRSKQELRDSQNALEEKEKEIEQHAQDLQESQSSLKEL 365

Query:   462 A-RVS-AD-EAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAA- 517
               R+   D + +E W +V  +   ++ +      K  L +TEE+L   V  + +  S   
Sbjct:   366 EERMKQGDRDLEESWSLVRQQEQELARV------KEVLRRTEEELDQRVALMGERCSLLE 419

Query:   518 --RASLQ 522
               RA +Q
Sbjct:   420 DERAKMQ 426

GO:0005540 "hyaluronic acid binding" evidence=IEA

ZFIN|ZDB-GENE-100917-2 plecb "plectin b" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 82/373 (21%), Positives = 161/373 (43%)

Query:   171 EYLRSVISDKLNRARELAAS---VSAARKDSIRRRRKAADDVELASLRHSQLEKQLXXXX 227
             E LR +  ++ N+ RE       ++AA +++ R+R+ A D+VE    +  +  KQ     
Sbjct:  1998 EKLRKLALEEENKRREAEEKLKKITAAEQEAARQRQAAQDEVERLKKKADEARKQKEDAD 2057

Query:   228 XXXXXX--XXQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVL--VSQIAAEQD 283
                       +  ++    AE   QS+L+  ++       +  K+ +      ++A E +
Sbjct:  2058 KEAERQIYAAKEAAEKAITAEQQVQSVLVQQKEDSL----VQKKLKEEFEKAKRLAQEAE 2113

Query:   284 CAS-LLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRK-IELEIESHLVNEA 341
              A    +  +A     A+   ++ ++   E   +  A  EA   RK  ELE E     EA
Sbjct:  2114 KAKEKAEKEAALLRQQAEDAERQRQTAEVEATNQAKAQEEAERLRKDAELEAEKRAQAEA 2173

Query:   342 RAVLNNSI-EHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEE 400
              A+    I +  +    +  E   K+K  +  EL K+   + + +K+ +  D  +  +++
Sbjct:  2174 AALKQKQIADEEMARHKKHAEQTLKQKSQVEQELAKVKLRLDETDKQKSVLDEELHRLKD 2233

Query:   401 RISIVVSDFQEYQSSINAKYDSLQSIIS-QLNLESEAMSMKKKEID---KFLNDEVDRGT 456
              +   V    + +  +      ++ +I  +L +E E   + +K+ D   KFL +E +   
Sbjct:  2234 EVGDAVKQKAQVEEELFKVRIQMEELIKLKLRIEQENQRLIQKDKDNTQKFLAEEAENMK 2293

Query:   457 KL-KELARVS--ADEAKEYWEVVEL----RRSLMSSILKSREDKVKLAKTEEKLSAEVQT 509
             KL +E AR+S  A E      + E     +R+L   +LK   +K++  +   KL AE + 
Sbjct:  2294 KLAEEAARLSIEAQETARMRHIAETDLAEQRALAEKMLK---EKMQAIQEASKLRAEAEM 2350

Query:   510 LQQEASAARASLQ 522
             LQ++   A+   Q
Sbjct:  2351 LQRQKDLAQEQAQ 2363

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|P35580 MYH10 "Myosin-10" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 90/371 (24%), Positives = 168/371 (45%)

Query:   171 EYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLXXXXXXX 230
             E L+     KLN +  +        K+S++ +++  ++          LEKQ+       
Sbjct:  1322 ELLQEETRQKLNLSSRIRQLEE--EKNSLQEQQEEEEEAR------KNLEKQVLALQSQL 1373

Query:   231 XXXXXQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKM--YDVLV---SQIAAEQDCA 285
                  +++ D L   E+ +++    L+DAEA    ++ K   YD L    +++  E D  
Sbjct:  1374 ADTK-KKVDDDLGTIESLEEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDL 1432

Query:   286 SL-LDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAV 344
             ++ LDH    ASN  +   KK + L +EE  K +++  A E  + E E       E +A+
Sbjct:  1433 TVDLDHQRQVASN-LEKKQKKFDQLLAEE--KSISARYAEERDRAEAEARE---KETKAL 1486

Query:   345 LNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISI 404
                S+  ++E+ L  KE   ++   L  +++ L++   D  K + E + + RA+E+++  
Sbjct:  1487 ---SLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEE 1543

Query:   405 VVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKK-EIDKFLNDEVDRGTK---LKE 460
             + +  +E +  + A  D+      +L LE    +MK + E D    DE +   K   +K+
Sbjct:  1544 MRTQLEELEDELQATEDA------KLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQ 1597

Query:   461 LARVSA---DEAKEYWEVVELRRSLMSSILKSREDKVKLA--------KTEEKLSAEVQT 509
             +  + A   DE K+    V  ++  M   LK  E +++ A        K   KL A+++ 
Sbjct:  1598 VRELEAELEDERKQRALAVASKKK-MEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKD 1656

Query:   510 LQQEASAARAS 520
              Q+E   ARAS
Sbjct:  1657 YQRELEEARAS 1667

GO:0005516 "calmodulin binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001778 "plasma membrane repair" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=IEA

GO:0007097 "nuclear migration" evidence=IEA

GO:0007512 "adult heart development" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0016460 "myosin II complex" evidence=IEA

GO:0021592 "fourth ventricle development" evidence=IEA

GO:0021670 "lateral ventricle development" evidence=IEA

GO:0021678 "third ventricle development" evidence=IEA

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0050885 "neuromuscular process controlling balance" evidence=IEA

GO:0055003 "cardiac myofibril assembly" evidence=IEA

GO:0055015 "ventricular cardiac muscle cell development" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0016459 "myosin complex" evidence=NAS

GO:0003779 "actin binding" evidence=NAS

GO:0005524 "ATP binding" evidence=IDA;NAS

GO:0030496 "midbody" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

GO:0001725 "stress fiber" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000146 "microfilament motor activity" evidence=IDA

GO:0000281 "cytokinesis after mitosis" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=IDA

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0007411 "axon guidance" evidence=TAS

UNIPROTKB|F8W6L6 MYH10 "Myosin-10" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 90/371 (24%), Positives = 168/371 (45%)

Query:   171 EYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLXXXXXXX 230
             E L+     KLN +  +        K+S++ +++  ++          LEKQ+       
Sbjct:  1338 ELLQEETRQKLNLSSRIRQLEE--EKNSLQEQQEEEEEAR------KNLEKQVLALQSQL 1389

Query:   231 XXXXXQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKM--YDVLV---SQIAAEQDCA 285
                  +++ D L   E+ +++    L+DAEA    ++ K   YD L    +++  E D  
Sbjct:  1390 ADTK-KKVDDDLGTIESLEEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDL 1448

Query:   286 SL-LDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAV 344
             ++ LDH    ASN  +   KK + L +EE  K +++  A E  + E E       E +A+
Sbjct:  1449 TVDLDHQRQVASN-LEKKQKKFDQLLAEE--KSISARYAEERDRAEAEARE---KETKAL 1502

Query:   345 LNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISI 404
                S+  ++E+ L  KE   ++   L  +++ L++   D  K + E + + RA+E+++  
Sbjct:  1503 ---SLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEE 1559

Query:   405 VVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKK-EIDKFLNDEVDRGTK---LKE 460
             + +  +E +  + A  D+      +L LE    +MK + E D    DE +   K   +K+
Sbjct:  1560 MRTQLEELEDELQATEDA------KLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLIKQ 1613

Query:   461 LARVSA---DEAKEYWEVVELRRSLMSSILKSREDKVKLA--------KTEEKLSAEVQT 509
             +  + A   DE K+    V  ++  M   LK  E +++ A        K   KL A+++ 
Sbjct:  1614 VRELEAELEDERKQRALAVASKKK-MEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKD 1672

Query:   510 LQQEASAARAS 520
              Q+E   ARAS
Sbjct:  1673 YQRELEEARAS 1683

GO:0003774 "motor activity" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|Q5EE04 TPR "TPR" [Xenopus laevis (taxid:8355)]

 Score = 165 (63.1 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 87/382 (22%), Positives = 164/382 (42%)

Query:   156 VVVN-EINNNDPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASL 214
             VV+N E + N   Q  E +R  I  +L  + E  + +     +S + +++  D+      
Sbjct:   643 VVLNLEESLNKEKQVTEEVRKTIEVRLKESSEYQSQLEKKMMESEKEKQELRDEKHKTVE 702

Query:   215 RHSQLEKQLXXXXXXXXXXXXQRISDLLAAAETHQQSLLIALRDAEAHCDA---IDSKMY 271
             +  Q   QL            Q +     +A   Q++       A    +A    + ++ 
Sbjct:   703 QMEQQVTQLRQSLSSLQAEVQQALQRATTSASNEQKAKQDCQEQARIAAEAQNKYERELM 762

Query:   272 ----DVLVSQIAAEQ-DCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLAS-TEALE 325
                 DV   Q A +Q   AS + H   + +  A + L ++ + S EE E+ L      ++
Sbjct:   763 LHAADVEALQAAKKQLTSASAIRHKCEETAQKAGSQLLESRA-SWEERERMLKEEVSQIQ 821

Query:   326 GRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKE 385
              R  +LE ++ L++E    L+  +  SV++         + K     ++ ++L  VR +E
Sbjct:   822 SRCKDLEKQNGLLHEQIESLSKKMVTSVQEGALNMSFGEEGKS--QEQVMEILRFVR-RE 878

Query:   386 KEIAENDSNIRAVE-----ERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMK 440
             KEIAE    +  VE     +RI  +  +  E Q S+NA+ + +Q + ++   + E + MK
Sbjct:   879 KEIAEARFEVAQVECLRYRQRIEHMERELHELQDSLNAEREKVQ-VTAKTMAQHEEL-MK 936

Query:   441 KKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTE 500
             K E    +N  ++    L+E       E ++    +   R L S+IL  +E   +L++  
Sbjct:   937 KTET---MNVLIESNKILREENEKQEQELQQLQAKI---RKLESNILPLQESNAELSEKS 990

Query:   501 EKLSAEVQTLQQEASAARASLQ 522
               L AE + L+++    RA  Q
Sbjct:   991 GMLQAEKKLLEEDVRRWRARTQ 1012

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0000189 "MAPK import into nucleus" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005487 "nucleocytoplasmic transporter activity" evidence=ISS

GO:0005643 "nuclear pore" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005868 "cytoplasmic dynein complex" evidence=ISS

GO:0006404 "RNA import into nucleus" evidence=ISS

GO:0006405 "RNA export from nucleus" evidence=ISS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=ISS

GO:0010965 "regulation of mitotic sister chromatid separation" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISS

GO:0031453 "positive regulation of heterochromatin assembly" evidence=ISS

GO:0031965 "nuclear membrane" evidence=ISS;IDA

GO:0031990 "mRNA export from nucleus in response to heat stress" evidence=ISS

GO:0034399 "nuclear periphery" evidence=IDA

GO:0034605 "cellular response to heat" evidence=ISS

GO:0042307 "positive regulation of protein import into nucleus" evidence=ISS

GO:0042405 "nuclear inclusion body" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0044615 "nuclear pore nuclear basket" evidence=IDA

GO:0045947 "negative regulation of translational initiation" evidence=ISS

GO:0046827 "positive regulation of protein export from nucleus" evidence=ISS

GO:0046832 "negative regulation of RNA export from nucleus" evidence=ISS

GO:0051019 "mitogen-activated protein kinase binding" evidence=ISS

GO:0070849 "response to epidermal growth factor stimulus" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0090267 "positive regulation of mitotic cell cycle spindle assembly checkpoint" evidence=ISS

GO:0090316 "positive regulation of intracellular protein transport" evidence=ISS

GO:1901673 "regulation of spindle assembly involved in mitosis" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0006606 "protein import into nucleus" evidence=ISS

GO:0006611 "protein export from nucleus" evidence=ISS

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0031647 "regulation of protein stability" evidence=ISS

GO:0042306 "regulation of protein import into nucleus" evidence=ISS

GO:0043495 "protein anchor" evidence=ISS

GO:0043578 "nuclear matrix organization" evidence=ISS

GO:0051292 "nuclear pore complex assembly" evidence=ISS

MGI|MGI:1930780 Myh10 "myosin, heavy polypeptide 10, non-muscle" [Mus musculus (taxid:10090)]

 Score = 162 (62.1 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 89/371 (23%), Positives = 167/371 (45%)

Query:   171 EYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLXXXXXXX 230
             E L+     KLN +  +        K+S++ +++  ++          LEKQ+       
Sbjct:  1322 ELLQEETRQKLNLSSRIRQLEE--EKNSLQEQQEEEEEAR------KNLEKQVLALQSQL 1373

Query:   231 XXXXXQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKM--YDVLV---SQIAAEQDCA 285
                  +++ D L   E+ +++    L+D EA    ++ K+  YD L    +++  E D  
Sbjct:  1374 ADTK-KKVDDDLGTIESLEEAKKKLLKDVEALSQRLEEKVLAYDKLEKTKNRLQQELDDL 1432

Query:   286 SL-LDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAV 344
             ++ LDH     SN  +   KK + L +EE  K +++  A E  + E E       E +A+
Sbjct:  1433 TVDLDHQRQIVSN-LEKKQKKFDQLLAEE--KGISARYAEERDRAEAEARE---KETKAL 1486

Query:   345 LNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISI 404
                S+  ++E+ L  KE   ++   L  +++ L++   D  K + E + + RA+E+++  
Sbjct:  1487 ---SLARALEEALEAKEEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEE 1543

Query:   405 VVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKK-EIDKFLNDEVDRGTK---LKE 460
             + +  +E +  + A  D+      +L LE    +MK + E D    DE +   K   LK+
Sbjct:  1544 MRTQLEELEDELQATEDA------KLRLEVNMQAMKAQFERDLQTRDEQNEEKKRLLLKQ 1597

Query:   461 LARVSA---DEAKEYWEVVELRRSLMSSILKSREDKVKLA--------KTEEKLSAEVQT 509
             +  + A   DE K+    V  ++  M   LK  E +++ A        K   KL A+++ 
Sbjct:  1598 VRELEAELEDERKQRALAVASKKK-MEIDLKDLEAQIEAANKARDEVIKQLRKLQAQMKD 1656

Query:   510 LQQEASAARAS 520
              Q+E   ARAS
Sbjct:  1657 YQRELEEARAS 1667

GO:0000146 "microfilament motor activity" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000281 "cytokinesis after mitosis" evidence=ISO;IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001725 "stress fiber" evidence=ISO;IDA;IMP

GO:0001764 "neuron migration" evidence=IMP

GO:0001778 "plasma membrane repair" evidence=IMP

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005819 "spindle" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=ISO;IDA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006887 "exocytosis" evidence=IMP

GO:0006930 "substrate-dependent cell migration, cell extension" evidence=IMP

GO:0007097 "nuclear migration" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0007512 "adult heart development" evidence=IMP

GO:0008152 "metabolic process" evidence=ISO

GO:0008283 "cell proliferation" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0016459 "myosin complex" evidence=IDA

GO:0016460 "myosin II complex" evidence=IDA

GO:0021592 "fourth ventricle development" evidence=IMP

GO:0021670 "lateral ventricle development" evidence=IMP

GO:0021678 "third ventricle development" evidence=IMP

GO:0021680 "cerebellar Purkinje cell layer development" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IGI

GO:0030048 "actin filament-based movement" evidence=ISO

GO:0030239 "myofibril assembly" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0030496 "midbody" evidence=ISO

GO:0030898 "actin-dependent ATPase activity" evidence=ISO

GO:0031175 "neuron projection development" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0032154 "cleavage furrow" evidence=ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0050885 "neuromuscular process controlling balance" evidence=IMP

GO:0051015 "actin filament binding" evidence=ISO

GO:0055003 "cardiac myofibril assembly" evidence=IMP

GO:0055015 "ventricular cardiac muscle cell development" evidence=IMP

GO:0060041 "retina development in camera-type eye" evidence=IMP

ZFIN|ZDB-GENE-030131-8984 pleca "plectin a" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 77/372 (20%), Positives = 163/372 (43%)

Query:   168 QRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDV-ELASL-RHSQLEKQLXX 225
             ++F  L      K   A      + AA +++ R+ + A ++V  L  L   ++ +K++  
Sbjct:  2164 EKFRKLALEEEKKRKEAEAKVKQIQAAEEEAARQHKAAQEEVGRLMKLAEEAKKQKEIAE 2223

Query:   226 XXXXXXXXXXQRISDLLAAAETHQQSLLIAL-RDAEAHCDAIDSKMYDVLVSQIAAEQDC 284
                       Q  +   +AAE   Q++L+   +D+ A  D +  +       ++A E + 
Sbjct:  2224 KEAEKQVILVQEAAQKCSAAEQKAQNVLVQQNKDSMAQ-DKLKEEFEKA--KKLAQEAEK 2280

Query:   285 ASLLDHFSADAS---NSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEA 341
             A   D+   +A+     A+   ++ ++  +E  ++  A  +A + RK E E E+    EA
Sbjct:  2281 AK--DNAEKEAALLHKKAEEAERQKKAAEAEAAKQAKAQEDAEKLRK-EAEKEASRRAEA 2337

Query:   342 RAV---LNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAV 398
              A    L    +  +    +  E   K+K  +  EL K+   + + +K+ +  D  ++ +
Sbjct:  2338 EAAALKLKQEADSEMAKYKKLAEKTLKQKSSVEEELVKVKVQLDETDKQKSVLDVELKRL 2397

Query:   399 EERISIVVSDFQEYQSSINAKYDSLQSIIS-QLNLESEAMSMKKKEID---KFLNDEVDR 454
             ++ +S  +    + +  ++     ++ ++  +L +E E   + KK+ D   K L +E + 
Sbjct:  2398 KQEVSDAIKQKAQVEDELSKVKIQMEDLLKLKLKIEKENQELMKKDKDNTKKLLEEEAEN 2457

Query:   455 GTKL-KELAR--VSADEAKEYWEVVELRRSLMSSIL-KSREDKVKLAKTEEKLSAEVQTL 510
               KL +E AR  + A EA    ++ E   +    +  K  E+K +  +   KL AE + L
Sbjct:  2458 MKKLAEEAARLNIEAQEAARLRQIAESDLAKQRELAEKMLEEKKQAIQEAAKLKAEAEKL 2517

Query:   511 QQEASAARASLQ 522
             Q++   A+   Q
Sbjct:  2518 QKQKDQAQVEAQ 2529

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|F6UV28 TPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 95/410 (23%), Positives = 180/410 (43%)

Query:   140 DAEASSKNSYSSIS-VPVVVNEINN--NDPHQRFEYLRSVISDKLNRARELAASVSAARK 196
             D +   K S S++     +V  +    N   Q  E +R  I  +L  + E    +     
Sbjct:   714 DLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLM 773

Query:   197 DSIRRRRKAADDVELA--SLRH--SQLEKQLXXXXXXXXXXXXQRISDLLA----AAETH 248
             +  + +++  DD   A  S+ H  S+L+K L            QR S  L+    A    
Sbjct:   774 EVEKEKQELQDDKRKAIESMEHQLSELKKTLNSVQNEVQEAL-QRASTALSNEQQARRDC 832

Query:   249 QQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQ--DCASLLDHFSADASNSADTFLKKA 306
             Q+   IA+     +   +     DV   Q A EQ    AS+  H   + +  A++ L + 
Sbjct:   833 QEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLE-ETTQKAESQLLEC 891

Query:   307 ESLSSEEMEKWLAS-TEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREK-EILY 364
             ++ S EE E+ L         R  +LE ++ L+++    L++ +  SV++ ++    +  
Sbjct:   892 KA-SWEERERMLKDEVSKCMSRCEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNVSL 950

Query:   365 KKKDILTNELQKLLALVRDKEKEIAENDSNIRAVE-----ERISIVVSDFQEYQSSINAK 419
              ++     ++ ++L  +R +EKEIAE    +  VE     +R+ ++  + QE Q S+NA+
Sbjct:   951 SEEGKSQEQILEILRFIR-REKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAE 1009

Query:   420 YDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKE-LARVSADEAKEYWEVVEL 478
              + +Q + ++   + E + MKK E    +N  ++    L+E   R+  D  +   +V   
Sbjct:  1010 REKVQ-VTAKTMAQHEEL-MKKTET---MNVVMETNKMLREEKERLEQDLQQMQAKV--- 1061

Query:   479 RRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQ 528
              R L   IL  +E   +L++    L AE + L+++    +A  Q +  SQ
Sbjct:  1062 -RKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQ-HLVSQ 1109

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

UNIPROTKB|E2QSE6 TPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 95/410 (23%), Positives = 180/410 (43%)

Query:   140 DAEASSKNSYSSIS-VPVVVNEINN--NDPHQRFEYLRSVISDKLNRARELAASVSAARK 196
             D +   K S S++     +V  +    N   Q  E +R  I  +L  + E    +     
Sbjct:   952 DLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLM 1011

Query:   197 DSIRRRRKAADDVELA--SLRH--SQLEKQLXXXXXXXXXXXXQRISDLLA----AAETH 248
             +  + +++  DD   A  S+ H  S+L+K L            QR S  L+    A    
Sbjct:  1012 EVEKEKQELQDDKRKAIESMEHQLSELKKTLNSVQNEVQEAL-QRASTALSNEQQARRDC 1070

Query:   249 QQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQ--DCASLLDHFSADASNSADTFLKKA 306
             Q+   IA+     +   +     DV   Q A EQ    AS+  H   + +  A++ L + 
Sbjct:  1071 QEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLE-ETTQKAESQLLEC 1129

Query:   307 ESLSSEEMEKWLAS-TEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREK-EILY 364
             ++ S EE E+ L         R  +LE ++ L+++    L++ +  SV++ ++    +  
Sbjct:  1130 KA-SWEERERMLKDEVSKCMSRCEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNVSL 1188

Query:   365 KKKDILTNELQKLLALVRDKEKEIAENDSNIRAVE-----ERISIVVSDFQEYQSSINAK 419
              ++     ++ ++L  +R +EKEIAE    +  VE     +R+ ++  + QE Q S+NA+
Sbjct:  1189 SEEGKSQEQILEILRFIR-REKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAE 1247

Query:   420 YDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKE-LARVSADEAKEYWEVVEL 478
              + +Q + ++   + E + MKK E    +N  ++    L+E   R+  D  +   +V   
Sbjct:  1248 REKVQ-VTAKTMAQHEEL-MKKTET---MNVVMETNKMLREEKERLEQDLQQMQAKV--- 1299

Query:   479 RRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQ 528
              R L   IL  +E   +L++    L AE + L+++    +A  Q +  SQ
Sbjct:  1300 -RKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQ-HLVSQ 1347

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006434 "seryl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004828 "serine-tRNA ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	533
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 56/337 (16%), Positives = 140/337 (41%), Gaps = 21/337 (6%)

Query: 195 RKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLI 254
           ++++ R+  +  +++E       +LEKQL++       E A+R  +L A     + +LL+
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEK--LERQAEKAERYQELKAELRELELALLL 231

Query: 255 A-LRDAEAHCDAIDS--KMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSS 311
           A L++     + ++      +  + ++  E + A               + L++      
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEA-------EKEIEELKSELEELREELE 284

Query: 312 EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILT 371
           E  E+ L   E +E  ++E EI   L      + N   E     +  +++I   K+++  
Sbjct: 285 ELQEELLELKEEIE--ELEGEIS-LLRERLEELENELEELEERLEELKEKIEALKEELEE 341

Query: 372 N-----ELQKLLALVRDKEKEIAE-NDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQS 425
                 EL++LLA + + ++E+ E   + +  +EE    +  +  E ++ +    + L+ 
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Query: 426 IISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSS 485
           +  ++    E +    + ++    +  +   +L+EL     +  +E  E+ E    L   
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461

Query: 486 ILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQ 522
           + +   +  +L +  ++L  E+ +L+       A  +
Sbjct: 462 LKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 15/224 (6%)

Query: 303 LKKAESLSSEEMEKWLASTEALEGRKIEL--------EIESHLVNEARAVLNNSIEHSVE 354
            +     S  E  +     E LEG K EL         IE+  ++E    L+++    + 
Sbjct: 662 PRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENR-LDELSQELSDA-SRKIG 719

Query: 355 DDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQS 414
           +  +E E L ++++ L   L++L   +   E+EI    S ++ +E RI  +  D  + + 
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779

Query: 415 SINAKYDSL-QSIISQLNLESEAMSMKKKEIDKFLND---EVDRGTKLKELARVSADEAK 470
           ++N     L  S I ++  E   +  +   I+  L +   +++R T  KE       E +
Sbjct: 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQ 839

Query: 471 EYWEVVELRR-SLMSSILKSREDKVKLAKTEEKLSAEVQTLQQE 513
           E    ++ +  S+   I      K +L +  E+L A ++ L+  
Sbjct: 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 42.1 bits (100), Expect = 6e-04
 Identities = 28/140 (20%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 359 EKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINA 418
           +KE    KK+ L    +++  L  + EKE+ E  + ++ +E+R+     +       +  
Sbjct: 48  KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107

Query: 419 KYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYW--EVV 476
           + + L+    +L  + + +  K++E+++ + +++    +L+ ++ ++A+EAKE    +V 
Sbjct: 108 REEELEKKEKELEQKQQELEKKEEELEELIEEQLQ---ELERISGLTAEEAKEILLEKVE 164

Query: 477 ELRRSLMSSILKSREDKVKL 496
           E  R   + ++K  E++ K 
Sbjct: 165 EEARHEAAVLIKEIEEEAKE 184

Length = 520

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.0 bits (99), Expect = 9e-04
 Identities = 36/197 (18%), Positives = 81/197 (41%), Gaps = 1/197 (0%)

Query: 322 EALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALV 381
           E LE  + EL+     + E  A L    E  +E+   E   L ++ + L  EL  L   +
Sbjct: 239 EELEELQEELKEAEEELEELTAELQEL-EEKLEELRLEVSELEEEIEELQKELYALANEI 297

Query: 382 RDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKK 441
              E++       +  +E ++  + +  +E +S ++   + L  +  +L    E +   +
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357

Query: 442 KEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEE 501
            E+++   +  +  ++L+EL         +  ++     SL + I +      +L    E
Sbjct: 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417

Query: 502 KLSAEVQTLQQEASAAR 518
           +L  E++ L ++   A 
Sbjct: 418 RLQQEIEELLKKLEEAE 434

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 44/258 (17%), Positives = 97/258 (37%), Gaps = 6/258 (2%)

Query: 177 ISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQ 236
           +  +L    E  + +    ++      +A  ++E       +L ++L+E  + E  E  +
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL-QEELLELKE 295

Query: 237 RISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADAS 296
            I +L       ++ L     + E   + ++     +   +   E+    L +     A 
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355

Query: 297 NSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLN---NSIEHSV 353
                  ++ E   S  +E+     EAL     ELE E   +      L     S+E  +
Sbjct: 356 LEE--AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413

Query: 354 EDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQ 413
           E      E L ++   L  EL++L   + +  +E+ E +  +  + +R+  +  +  E Q
Sbjct: 414 ERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQ 473

Query: 414 SSINAKYDSLQSIISQLN 431
             +      L S+ ++L+
Sbjct: 474 EELQRLEKELSSLEARLD 491

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 59/336 (17%), Positives = 122/336 (36%), Gaps = 38/336 (11%)

Query: 181 LNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISD 240
           +        S    R+  I    +    +E    + ++LEK L E    E  E  + +  
Sbjct: 661 ITGGSAKTNSSILERRREIEELEE---KIEELEEKIAELEKALAEL-RKELEELEEELEQ 716

Query: 241 LLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSAD 300
           L    E   + +    +D       ++         Q+       S             +
Sbjct: 717 LRKELEELSRQISALRKDLARLEAEVE---------QLEERIAQLSKELTELEAEIEELE 767

Query: 301 TFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREK 360
             L++AE   +E   +       +E  K EL+     ++E RA L       + ++    
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTL-----LNEEAAN- 821

Query: 361 EILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKY 420
                    L   L+ L   +   E+ + + +  I  + E I  + ++ +E +  I    
Sbjct: 822 ---------LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872

Query: 421 DSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRR 480
             L++++++     EA+++ + E+++   +  +  +K  EL R          E+ ELR 
Sbjct: 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRR----------ELEELRE 922

Query: 481 SLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASA 516
            L    L+    +V++   +E+LS E     +EA A
Sbjct: 923 KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA 958

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	533
PRK02224	880	chromosome segregation protein; Provisional	97.31
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.22
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.23
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	95.85
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	95.07
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.55
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.44
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.4
PRK02224	880	chromosome segregation protein; Provisional	94.17
PRK11637	428	AmiB activator; Provisional	94.0
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	93.7
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	92.8
PRK04778	569	septation ring formation regulator EzrA; Provision	91.43
PRK11637	428	AmiB activator; Provisional	91.34
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	89.78
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	89.1
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	88.08
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	85.81
PHA02562	562	46 endonuclease subunit; Provisional	85.18
PRK08475	167	F0F1 ATP synthase subunit B; Validated	83.32
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	83.01
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	81.65
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	81.48
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	80.82
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	80.13

>PRK02224 chromosome segregation protein; Provisional

Probab=97.31  E-value=0.41  Score=52.89  Aligned_cols=204  Identities=17%  Similarity=0.197  Sum_probs=112.3

Q ss_pred             hHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcH
Q 009482          232 FEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSS  311 (533)
Q Consensus       232 Fe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ss  311 (533)
                      +...+..-+.+..++++...+-.-+..++..+..+..++...-...-..+.+...|......-+. ......++-..+. 
T Consensus       243 ~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~-~~~~l~~~~~~l~-  320 (880)
T PRK02224        243 LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA-DAEAVEARREELE-  320 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHH-
Confidence            33444444566666777777777777777777777777766555444444443333332222111 1111112222221 


Q ss_pred             HHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 009482          312 EEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAEN  391 (533)
Q Consensus       312 kEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeN  391 (533)
                      +.++.+..-...+..+=.++.-+.           ..+...+..=.++..-+..+-..+++++..+-..+...+.+|...
T Consensus       321 ~k~~el~~~l~~~~~~l~~~~~~~-----------e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l  389 (880)
T PRK02224        321 DRDEELRDRLEECRVAAQAHNEEA-----------ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL  389 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222221111100100000           111112222222223344556677888888888888888888888


Q ss_pred             cchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhh
Q 009482          392 DSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEV  452 (533)
Q Consensus       392 ds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee  452 (533)
                      ...+..+..+|..+...|.    .++.+|..++..+.++...-..+....+...++|...+
T Consensus       390 ~~el~el~~~l~~~~~~~~----~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~  446 (880)
T PRK02224        390 EEEIEELRERFGDAPVDLG----NAEDFLEELREERDELREREAELEATLRTARERVEEAE  446 (880)
T ss_pred             HHHHHHHHHHHhcchhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888877665443    44677788888888888777777777777777777666

>TIGR00606 rad50 rad50

Probab=97.22  E-value=0.77  Score=54.05  Aligned_cols=86  Identities=15%  Similarity=0.185  Sum_probs=70.3

Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHh
Q 009482          366 KKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEID  445 (533)
Q Consensus       366 kkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID  445 (533)
                      ++.-|..+|.+|-..+..-..+|.+.+..|..+..+|...-+.|.......+.++..+|..+.++......|...-++|+
T Consensus       882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  961 (1311)
T TIGR00606       882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE  961 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777666666667777777777778888888888888888888899999999999999999999999999999


Q ss_pred             Hhhhhh
Q 009482          446 KFLNDE  451 (533)
Q Consensus       446 ~fls~e  451 (533)
                      .|+..-
T Consensus       962 ~y~~~~  967 (1311)
T TIGR00606       962 NKIQDG  967 (1311)
T ss_pred             HHHHcC
Confidence            999864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=96.23  E-value=3.8  Score=48.47  Aligned_cols=152  Identities=9%  Similarity=0.057  Sum_probs=79.7

Q ss_pred             HhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHH
Q 009482          363 LYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKK  442 (533)
Q Consensus       363 l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkk  442 (533)
                      +..+-.-+..+++.+-. +......|......|..++.+|....+.+....+  +.-++.|++.+..+..+.+++   ++
T Consensus       770 ~~~~l~~~~~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~--~~s~~ele~ei~~~~~el~~l---~~  843 (1311)
T TIGR00606       770 QETLLGTIMPEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL--DRTVQQVNQEKQEKQHELDTV---VS  843 (1311)
T ss_pred             HHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHH---HH
Confidence            33333444445544433 3445566677777888888888888777776666  234455555555555544444   34


Q ss_pred             HHhHhhhhhhhcccchHHH---HHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 009482          443 EIDKFLNDEVDRGTKLKEL---ARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARA  519 (533)
Q Consensus       443 eID~fls~ee~~gakLRe~---a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~  519 (533)
                      +|+......+..-..+.++   ++-..++--...+.+..|..|-..|-.-.+.-..+...-.++-.++.-|.+++..+..
T Consensus       844 ~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~  923 (1311)
T TIGR00606       844 KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ  923 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            4444444444444444444   4444444444444555666665555554444444444344444444444444444333


Q ss_pred             h
Q 009482          520 S  520 (533)
Q Consensus       520 S  520 (533)
                      .
T Consensus       924 ~  924 (1311)
T TIGR00606       924 E  924 (1311)
T ss_pred             H
Confidence            3

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=95.85  E-value=4.1  Score=45.54  Aligned_cols=17  Identities=12%  Similarity=0.143  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHh
Q 009482          179 DKLNRARELAASVSAAR  195 (533)
Q Consensus       179 ~KL~~~~q~AasvsaaR  195 (533)
                      .+|..++.....+...+
T Consensus       177 ~~l~~~~~~l~el~~~~  193 (1164)
T TIGR02169       177 EELEEVEENIERLDLII  193 (1164)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=95.07  E-value=0.039  Score=39.99  Aligned_cols=33  Identities=39%  Similarity=0.626  Sum_probs=29.3

Q ss_pred             hHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHh
Q 009482          216 HSQLEKQLDEACEAEDFEAAQRISDLLAAAETH  248 (533)
Q Consensus       216 hk~LE~eLEeACEaEDFe~AErISdsLAa~EKe  248 (533)
                      ..+|+.+++.|++.+|||.|-+|-|.+..++++
T Consensus         4 i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q   36 (36)
T PF02151_consen    4 IKELEEKMEEAVENEDFEKAARLRDQIKALKKQ   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence            568999999999999999999999999998763

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.55  E-value=13  Score=43.81  Aligned_cols=53  Identities=19%  Similarity=0.246  Sum_probs=32.2

Q ss_pred             hhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHH
Q 009482          214 LRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMY  271 (533)
Q Consensus       214 ~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq  271 (533)
                      .....++.+++.++.     ....+...+..++.....+-..++.+...++.+..++.
T Consensus       674 ~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (1163)
T COG1196         674 EELAELEAQLEKLEE-----ELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELA  726 (1163)
T ss_pred             HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555442     23455566666666677777777777777777666655

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.44  E-value=13  Score=43.61  Aligned_cols=208  Identities=22%  Similarity=0.239  Sum_probs=100.1

Q ss_pred             HHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHh-hhhhchHHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHH
Q 009482          193 AARKDSIRRRRKAADDVELASLRHSQLEKQLDEA-CEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMY  271 (533)
Q Consensus       193 aaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeA-CEaEDFe~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq  271 (533)
                      ..|+.+-++-+++.+|+......-.+|+++|+-. -+++.+++...++..+-.++..  .++.       .|..+..++.
T Consensus       172 ~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~--~~~~-------~~~~~~~~l~  242 (1163)
T COG1196         172 ERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELA--LLLA-------KLKELRKELE  242 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-------HHHHHHHHHH
Confidence            3566677777888999999999999999998865 3566666666666655544332  2222       2333334444


Q ss_pred             HHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHH-HHHHHhhHhhhhhh--hhhHHHHHhHHHHHHhhhhhh
Q 009482          272 DVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEE-MEKWLASTEALEGR--KIELEIESHLVNEARAVLNNS  348 (533)
Q Consensus       272 ~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskE-me~W~ss~E~LE~k--K~EleiEs~~v~eAr~~Ln~s  348 (533)
                      .+-+---..+++...+...+..-..    .+...-..+.... --.|. ..+.+..+  .-+++.+...+.+-+..+.+-
T Consensus       243 ~~~~~l~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~  317 (1163)
T COG1196         243 ELEEELSRLEEELEELQEELEEAEK----EIEELKSELEELREELEEL-QEELLELKEEIEELEGEISLLRERLEELENE  317 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443334455555555555543322    2222222222111 11222 44444443  223444444455555544444


Q ss_pred             hhhhhhhh-hHHHHHHhhhhhh-----HHHHHHHHHHHHHhhhhhhhhhcc-hHHHHHHHHHHHhhhhhhhhh
Q 009482          349 IEHSVEDD-LREKEILYKKKDI-----LTNELQKLLALVRDKEKEIAENDS-NIRAVEERISIVVSDFQEYQS  414 (533)
Q Consensus       349 Ieh~vEdD-krEKe~l~kkkd~-----L~~EL~~LL~lVk~KE~EIAeNds-~IkaV~erIs~VVS~F~e~Qs  414 (533)
                      ++..-+.+ ..+..+-..+..+     +..|++..+..+...-.+...... ..++++.++....+.+.....
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (1163)
T COG1196         318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA  390 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            33322222 2222222222222     234555555555444444443333 444555555555555544433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.40  E-value=11  Score=42.36  Aligned_cols=7  Identities=29%  Similarity=0.534  Sum_probs=2.6

Q ss_pred             hHHHHHH
Q 009482          216 HSQLEKQ  222 (533)
Q Consensus       216 hk~LE~e  222 (533)
                      +..++.+
T Consensus       718 ~~~l~~~  724 (1164)
T TIGR02169       718 IGEIEKE  724 (1164)
T ss_pred             HHHHHHH
Confidence            3333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=94.17  E-value=12  Score=41.87  Aligned_cols=35  Identities=11%  Similarity=0.107  Sum_probs=18.2

Q ss_pred             HHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhH
Q 009482          236 QRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKM  270 (533)
Q Consensus       236 ErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~km  270 (533)
                      +.+...+..++++...+-..|.++....+.++..+
T Consensus       380 ~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l  414 (880)
T PRK02224        380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFL  414 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHH
Confidence            33445566666666666555554444444444443

>PRK11637 AmiB activator; Provisional

Probab=94.00  E-value=6  Score=41.15  Aligned_cols=21  Identities=14%  Similarity=0.143  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 009482          468 EAKEYWEVVELRRSLMSSILK  488 (533)
Q Consensus       468 EAk~~qe~V~lRR~LassIlK  488 (533)
                      ....+.+.-..|+.|....-.
T Consensus       168 d~~~l~~l~~~~~~L~~~k~~  188 (428)
T PRK11637        168 RQETIAELKQTREELAAQKAE  188 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444433333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=93.70  E-value=7.2  Score=37.84  Aligned_cols=223  Identities=22%  Similarity=0.245  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHHHHhHHHHHHH
Q 009482          176 VISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIA  255 (533)
Q Consensus       176 qIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeACEaEDFe~AErISdsLAa~EKek~~ll~a  255 (533)
                      +|-..|+.+++.+..+-..-+..-.++-++=.++.+..-+-..||.+|+.+=+     +...+..-|..+++..+-.-.+
T Consensus         5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ee-----rL~~~~~kL~~~e~~~de~er~   79 (237)
T PF00261_consen    5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEE-----RLEEATEKLEEAEKRADESERA   79 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC-----CCCHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666677777777777777777777777788777777777766654422     1223334455555554444444


Q ss_pred             HHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH------HHHHHHhhHhhhhhhhh
Q 009482          256 LRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE------EMEKWLASTEALEGRKI  329 (533)
Q Consensus       256 LRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk------Eme~W~ss~E~LE~kK~  329 (533)
                      ++               +|+++...-++....|+.=-+.|...++.+..+..+...+      +++.--...+.++.+-.
T Consensus        80 ~k---------------~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~  144 (237)
T PF00261_consen   80 RK---------------VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIK  144 (237)
T ss_dssp             HH---------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH---------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHH
Confidence            44               4555555555555566666677777777777777666554      45555566777777877


Q ss_pred             hHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhh
Q 009482          330 ELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDF  409 (533)
Q Consensus       330 EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F  409 (533)
                      +|+-+.+.|.+---.|+-+-+.+-+.   + +.+-.+=..|+.-|.+.-.-.-.-|..+......|..++..|...-..|
T Consensus       145 eLE~el~~~~~~lk~lE~~~~~~~~r---e-~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~  220 (237)
T PF00261_consen  145 ELEEELKSVGNNLKSLEASEEKASER---E-DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY  220 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777655444444333322110   0 1111122233333333333333333334444444444444444444444


Q ss_pred             hhhhhhhhhchhh
Q 009482          410 QEYQSSINAKYDS  422 (533)
Q Consensus       410 ~e~QssId~k~~~  422 (533)
                      ...+-.+|.-++.
T Consensus       221 ~~~~~eld~~l~e  233 (237)
T PF00261_consen  221 KKVQEELDQTLNE  233 (237)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=92.80  E-value=35  Score=43.20  Aligned_cols=342  Identities=17%  Similarity=0.213  Sum_probs=170.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHH---HHHHHHHhhhhhchHHHHHHhHH
Q 009482          165 DPHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQ---LEKQLDEACEAEDFEAAQRISDL  241 (533)
Q Consensus       165 ~~~erl~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~---LE~eLEeACEaEDFe~AErISds  241 (533)
                      .+..+++.+++|+..-...-.+++......+.+.-..|.+--++.+.-.--++.   .-.++-++|-  -|+  +-+-+.
T Consensus      1298 ~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~--k~e--~~~~~~ 1373 (1930)
T KOG0161|consen 1298 ALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKK--KFE--EEVLQR 1373 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHH
Confidence            355557778888888777778888888888888777777666655544322222   2222222221  111  112233


Q ss_pred             HHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHHHHHHHHhhH
Q 009482          242 LAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSEEMEKWLAST  321 (533)
Q Consensus       242 LAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~sskEme~W~ss~  321 (533)
                      +..+|..|..+..-+-.++...+.+..++...-..+-....|...+.-.  .+..+.+-..+.+=..=..+=+..|....
T Consensus      1374 ~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d--~~~~~~~~~~le~k~k~f~k~l~e~k~~~ 1451 (1930)
T KOG0161|consen 1374 LEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLD--LERSRAAVAALEKKQKRFEKLLAEWKKKL 1451 (1930)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666655555555555555544444322221111111111100  01111112222222222334455555555


Q ss_pred             hhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHH
Q 009482          322 EALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEER  401 (533)
Q Consensus       322 E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~er  401 (533)
                      +.|-.--=...-|.+-...=...|.+.++.+.+    .++.+-..+..|..|+.+|-.-+...++-+.+...-.+..+.+
T Consensus      1452 e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e----~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e 1527 (1930)
T KOG0161|consen 1452 EKLQAELDAAQRELRQLSTELQKLKNALEELLE----QLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQE 1527 (1930)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443221111122222222222233333333333    5666666666677777666655555444444433333333333


Q ss_pred             HHHHhhhhhhhhhh----hhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccc--------hHHHHHhcHHHH
Q 009482          402 ISIVVSDFQEYQSS----INAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTK--------LKELARVSADEA  469 (533)
Q Consensus       402 Is~VVS~F~e~Qss----Id~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gak--------LRe~a~~s~~EA  469 (533)
                      +..+=....|...+    =+.++. ++-.          +.-.|.+|+++|..-++.-..        ++.+...-.+|+
T Consensus      1528 ~~elQ~aLeElE~~le~eE~~~lr-~~~~----------~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~ 1596 (1930)
T KOG0161|consen 1528 KEELQAALEELEAALEAEEDKKLR-LQLE----------LQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAET 1596 (1930)
T ss_pred             HHHHHHHHHHHHHHhhhhhhHHHH-HHHH----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            33322222222221    111111 2222          455677777777765544322        333344445788


Q ss_pred             HHHHHHHHHHHHHHHHHhh-------hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 009482          470 KEYWEVVELRRSLMSSILK-------SREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTS  527 (533)
Q Consensus       470 k~~qe~V~lRR~LassIlK-------SrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE~~~~  527 (533)
                      +.=.+++.+.+|+-.-|=.       +.--+..+.|.=-++...+++||.++.+++.+.+++.+-
T Consensus      1597 r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q 1661 (1930)
T KOG0161|consen 1597 RSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQ 1661 (1930)
T ss_pred             HHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888866544422       333455566666678889999999999999999998753

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=91.43  E-value=25  Score=38.43  Aligned_cols=263  Identities=17%  Similarity=0.222  Sum_probs=125.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHH----------HhhhhhchHHH
Q 009482          166 PHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLD----------EACEAEDFEAA  235 (533)
Q Consensus       166 ~~erl~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLE----------eACEaEDFe~A  235 (533)
                      ++++...|+..+..=+.+=.+--..|...|..--.-|+.+..+-.+-..--..||.+|.          +.-++|||..|
T Consensus       117 ~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A  196 (569)
T PRK04778        117 IEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYVEA  196 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            34444445555554444445555667777777777788887776666666677887775          46789999999


Q ss_pred             HHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHH--HhhhhhhhhHHHHHHHhhhhcHHH
Q 009482          236 QRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLD--HFSADASNSADTFLKKAESLSSEE  313 (533)
Q Consensus       236 ErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~--~FakdA~~~A~~~~k~A~~~sskE  313 (533)
                      ..|-+.|...=......+.       .+=.+=.+++.++=.||.-=..+-.=|.  +|.=+   | ..+.++-..+. +.
T Consensus       197 ~e~l~~l~~~~~~l~~~~~-------~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~---~-~~i~~~i~~l~-~~  264 (569)
T PRK04778        197 REILDQLEEELAALEQIME-------EIPELLKELQTELPDQLQELKAGYRELVEEGYHLD---H-LDIEKEIQDLK-EQ  264 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCC---C-CChHHHHHHHH-HH
Confidence            8876655433222222221       1212223344444344432111111111  11100   0 01111111110 11


Q ss_pred             HHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhh---hHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 009482          314 MEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDD---LREKEILYKKKDILTNELQKLLALVRDKEKEIAE  390 (533)
Q Consensus       314 me~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdD---krEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAe  390 (533)
                      |..-......|+.++.         .+.--.++.-|+++-+.=   ..-+...-|....+++-|.++-+-.+.-..||+.
T Consensus       265 i~~~~~~l~~l~l~~~---------~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~  335 (569)
T PRK04778        265 IDENLALLEELDLDEA---------EEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDR  335 (569)
T ss_pred             HHHHHHHHHhcChHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111222222222         222223344444443221   1122233344455555566655555555666666


Q ss_pred             hcch----------HHHHHHHHHHHhhhhhhhhhhhhhc---hhhHHHHHHhhhhhhHHhhhhHHHHhHhhh
Q 009482          391 NDSN----------IRAVEERISIVVSDFQEYQSSINAK---YDSLQSIISQLNLESEAMSMKKKEIDKFLN  449 (533)
Q Consensus       391 Nds~----------IkaV~erIs~VVS~F~e~QssId~k---~~~Lqs~lsq~dletEaL~lKkkeID~fls  449 (533)
                      .+.+          ++..+++|..+-..|...+..|+.+   |+.++..+..+...-+.+.-.+.+|-+.|.
T Consensus       336 l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~  407 (569)
T PRK04778        336 VKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ  407 (569)
T ss_pred             HHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555          6666677777777776666555433   555555555555555555555555555444

>PRK11637 AmiB activator; Provisional

Probab=91.34  E-value=21  Score=37.32  Aligned_cols=42  Identities=17%  Similarity=0.130  Sum_probs=21.2

Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhh
Q 009482          369 ILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQ  410 (533)
Q Consensus       369 ~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~  410 (533)
                      .+..+|..+=.-+...+.+|++...+|...+..+...+...+
T Consensus        93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y  134 (428)
T PRK11637         93 ETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF  134 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555555544444333

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=89.78  E-value=39  Score=37.95  Aligned_cols=58  Identities=10%  Similarity=0.201  Sum_probs=48.9

Q ss_pred             HHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhh
Q 009482          236 QRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSA  293 (533)
Q Consensus       236 ErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~Fak  293 (533)
                      ..+-..+..+.++.+.|-+.|+...-.|+.+-.+.+++..+.=...+|-..|..+.++
T Consensus       160 ~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e  217 (546)
T PF07888_consen  160 EQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE  217 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566788888999999999999999999999999998888888888888887754

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=89.10  E-value=7.6  Score=37.39  Aligned_cols=123  Identities=26%  Similarity=0.335  Sum_probs=84.9

Q ss_pred             HHHHhhhhcHHHHHHHHhhHhhhhhhhhhHH--HHHhH--HHHHHhh---hhhhhhhhhhhhhHHHHHHhhhhhhHHHHH
Q 009482          302 FLKKAESLSSEEMEKWLASTEALEGRKIELE--IESHL--VNEARAV---LNNSIEHSVEDDLREKEILYKKKDILTNEL  374 (533)
Q Consensus       302 ~~k~A~~~sskEme~W~ss~E~LE~kK~Ele--iEs~~--v~eAr~~---Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL  374 (533)
                      ....++++|..-+--++...|.+|.||+|..  |..++  |.++--.   +-.-+|..+-+-++|-+++.||=|....||
T Consensus        21 ~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreL  100 (159)
T PF04949_consen   21 MDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNREL  100 (159)
T ss_pred             cchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh
Confidence            3456778888888888899999999998863  22221  2222222   223355678888999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHH
Q 009482          375 QKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKK  442 (533)
Q Consensus       375 ~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkk  442 (533)
                      .-|=.-++.||+|.-+.-....+-...=.                  .|-..|-.+-.++|.+.+||=
T Consensus       101 kpl~~~cqKKEkEykealea~nEknkeK~------------------~Lv~~L~eLv~eSE~~rmKKL  150 (159)
T PF04949_consen  101 KPLGQSCQKKEKEYKEALEAFNEKNKEKA------------------QLVTRLMELVSESERLRMKKL  150 (159)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998765332222222222                  233344446678888888873

This entry represents proteins annotated as RAB6-interacting golgins.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=88.08  E-value=1.5  Score=50.87  Aligned_cols=53  Identities=17%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             HHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhh------hhHHHHhHhhhhhhhcccchHHHHHh
Q 009482          402 ISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMS------MKKKEIDKFLNDEVDRGTKLKELARV  464 (533)
Q Consensus       402 Is~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~------lKkkeID~fls~ee~~gakLRe~a~~  464 (533)
                      ..-+.+-||+.   --..|+.|-+-..+|..--+.|+      -||=-+.+|.       ++||.|-++
T Consensus       930 F~ekM~~F~e~---a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFF-------aDi~tFrna  988 (1102)
T KOG1924|consen  930 FVEKMTSFHEK---AREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFF-------ADIRTFRNA  988 (1102)
T ss_pred             HHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHH-------HHHHHHHHH
Confidence            33445555553   22346666666666666666655      3666677776       467777443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=85.81  E-value=62  Score=35.80  Aligned_cols=14  Identities=29%  Similarity=0.245  Sum_probs=5.9

Q ss_pred             hhhhhHHHHHHHHH
Q 009482          212 ASLRHSQLEKQLDE  225 (533)
Q Consensus       212 as~khk~LE~eLEe  225 (533)
                      ...+..+||.++..
T Consensus       207 ~~~~~~~le~el~~  220 (650)
T TIGR03185       207 ILSEIEALEAELKE  220 (650)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444433

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.18  E-value=54  Score=34.55  Aligned_cols=23  Identities=17%  Similarity=0.069  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 009482          500 EEKLSAEVQTLQQEASAARASLQ  522 (533)
Q Consensus       500 EEel~~dvQ~LrQqvS~AR~SLQ  522 (533)
                      .+++..++..+.++...++..+.
T Consensus       374 ~~~~~~~l~~l~~~l~~~~~~~~  396 (562)
T PHA02562        374 FVDNAEELAKLQDELDKIVKTKS  396 (562)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555444444433

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=83.32  E-value=21  Score=33.21  Aligned_cols=94  Identities=17%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482          233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE  312 (533)
Q Consensus       233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk  312 (533)
                      +|-++|...|..+++.+...-..+.+++....              .+..||..+++.-.++|..-.+.+.++|..-...
T Consensus        53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~--------------~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~  118 (167)
T PRK08475         53 SRINKISKRLEEIQEKLKESKEKKEDALKKLE--------------EAKEKAELIVETAKKEAYILTQKIEKQTKDDIEN  118 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566777777777666666555555543322              5667888889988999999999999999999999


Q ss_pred             HHHHHHhhHhhhhhhhhhHHHHHhHHHHH
Q 009482          313 EMEKWLASTEALEGRKIELEIESHLVNEA  341 (533)
Q Consensus       313 Eme~W~ss~E~LE~kK~EleiEs~~v~eA  341 (533)
                      -++.|.+..+ .|.++.-.++-.++++++
T Consensus       119 ~~~~a~~~ie-~Ek~~a~~elk~eii~~~  146 (167)
T PRK08475        119 LIKSFEELME-FEVRKMEREVVEEVLNEL  146 (167)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            9999998876 455666666666666554

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=83.01  E-value=49  Score=32.39  Aligned_cols=106  Identities=20%  Similarity=0.224  Sum_probs=80.9

Q ss_pred             HHHHHHhHHHHHHHHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhhhhhHhHHHHHHHhhhhhhhhHHHHHHHhhhhcHH
Q 009482          233 EAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASLLDHFSADASNSADTFLKKAESLSSE  312 (533)
Q Consensus       233 e~AErISdsLAa~EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqIaaEEE~A~lL~~FakdA~~~A~~~~k~A~~~ssk  312 (533)
                      +|-++|...|..+++-+...-..+.+++...       .       .+..|+..++++..+.|..-...+..+|..=..+
T Consensus        36 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l-------~-------~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~  101 (246)
T TIGR03321        36 AREKKIAGELADADTKKREAEQERREYEEKN-------E-------ELDQQREVLLTKAKEEAQAERQRLLDEAREEADE  101 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777777777776655555444322       2       4789999999999999999999999999999999


Q ss_pred             HHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhh
Q 009482          313 EMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSV  353 (533)
Q Consensus       313 Eme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~v  353 (533)
                      .+++|....+. |..+.--++..++++-|-..-...|.+.+
T Consensus       102 ~~~~a~~~ie~-E~~~a~~~l~~ei~~la~~~A~kil~~~~  141 (246)
T TIGR03321       102 IREKWQEALRR-EQAALSDELRRRTGAEVFAIARKVLTDLA  141 (246)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999988764 66666667777777776666666666665

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=81.65  E-value=41  Score=34.11  Aligned_cols=60  Identities=33%  Similarity=0.390  Sum_probs=53.5

Q ss_pred             hhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhhhcchHHHHHHHHHHHhhh
Q 009482          348 SIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSD  408 (533)
Q Consensus       348 sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE~EIAeNds~IkaV~erIs~VVS~  408 (533)
                      ++...+..-+-|++-+.+.-.-+-.|+++|=..|++-|.+|.+-..+|+-.+++++ .|++
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-~v~~   87 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-AVKD   87 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence            67777888888999999999999999999999999999999999999999999994 4444

>smart00787 Spc7 Spc7 kinetochore protein

Probab=81.48  E-value=47  Score=34.42  Aligned_cols=159  Identities=21%  Similarity=0.275  Sum_probs=83.5

Q ss_pred             hhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 009482          306 AESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKE  385 (533)
Q Consensus       306 A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~KE  385 (533)
                      |.-.+.+..-.|.+..  ++.=|-.++-....+..-...|+.-++-+    ..=+..|..+.+.|..|+..|-+.+    
T Consensus       126 aRl~ak~~WYeWR~kl--legLk~~L~~~~~~l~~D~~~L~~~~~~l----~~~~~~l~~~~~~L~~e~~~L~~~~----  195 (312)
T smart00787      126 ARLEAKKMWYEWRMKL--LEGLKEGLDENLEGLKEDYKLLMKELELL----NSIKPKLRDRKDALEEELRQLKQLE----  195 (312)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhH----
Confidence            3344555667887765  55544444443333333333333322211    1234456777888888888765544    


Q ss_pred             hhhhhhcch-HHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhcccchHHHHHh
Q 009482          386 KEIAENDSN-IRAVEERISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARV  464 (533)
Q Consensus       386 ~EIAeNds~-IkaV~erIs~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~gakLRe~a~~  464 (533)
                      .||..||.. +....++|..+-.....++..    +..++..+..+...-++..-+|.++-.=|...+.   .+.+.=..
T Consensus       196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~----l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~---~~~~~r~~  268 (312)
T smart00787      196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKK----LEELEEELQELESKIEDLTNKKSELNTEIAEAEK---KLEQCRGF  268 (312)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCC
Confidence            577777764 456667777665544444333    4445555555555555555555555544444443   22233334


Q ss_pred             cHHHHHHHHHHHHHHHH
Q 009482          465 SADEAKEYWEVVELRRS  481 (533)
Q Consensus       465 s~~EAk~~qe~V~lRR~  481 (533)
                      +..|+..++..|..-.+
T Consensus       269 t~~Ei~~Lk~~~~~Le~  285 (312)
T smart00787      269 TFKEIEKLKEQLKLLQS  285 (312)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            45555555555554443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=80.82  E-value=3.2  Score=48.30  Aligned_cols=12  Identities=50%  Similarity=0.545  Sum_probs=7.5

Q ss_pred             hhceeccCCccc
Q 009482           11 EGMVLFTPSQLA   22 (533)
Q Consensus        11 EGMVLF~Ps~~~   22 (533)
                      |+|-|=+|++..
T Consensus       510 e~~al~s~~~~~  521 (1102)
T KOG1924|consen  510 EKQALSSPSQLL  521 (1102)
T ss_pred             hhhhccCcccCC
Confidence            466677776643

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=80.13  E-value=1.9e+02  Score=37.23  Aligned_cols=305  Identities=18%  Similarity=0.235  Sum_probs=144.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHhhhhhchHHHHHHhHHHHHH
Q 009482          166 PHQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAA  245 (533)
Q Consensus       166 ~~erl~~lrsqIs~KL~~~~q~AasvsaaRk~~~~rRRKaaEd~~sas~khk~LE~eLEeACEaEDFe~AErISdsLAa~  245 (533)
                      .++.++..++........+...+...++.+.++-+++|+.=.-+.....+-.++++++-.            ++.-...+
T Consensus      1204 ~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~------------l~~q~~~l 1271 (1930)
T KOG0161|consen 1204 DKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRND------------LTAKRSRL 1271 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHh
Confidence            344477777777777777777777777887777777755544666666666666655432            22222223


Q ss_pred             HHhHHHHHHHHHhhhhhhchhhhhHHHHHHHhh----------------------hhhHhHHHHHHHhhhhhhhhHHHHH
Q 009482          246 ETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQI----------------------AAEQDCASLLDHFSADASNSADTFL  303 (533)
Q Consensus       246 EKek~~ll~aLRdAE~~~DsvD~kmq~vL~SqI----------------------aaEEE~A~lL~~FakdA~~~A~~~~  303 (533)
                      -++-.-+...|-++++.|..+ +++...+.+||                      ..+.||..|.+++-.+ .+.-+..+
T Consensus      1272 ~~E~~~l~~~lee~e~~~~~~-~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee-~e~~~~l~ 1349 (1930)
T KOG0161|consen 1272 QNENEELSRQLEEAEAKLSAL-SRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEE-QEAKNELE 1349 (1930)
T ss_pred             hhhHHHHhhHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            333333333344444433332 12222222222                      2345555555555433 33334444


Q ss_pred             HHhhhhcHHHHHHHHhhHhhhhhhhhhHHHHHhHHHHHHhhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 009482          304 KKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRD  383 (533)
Q Consensus       304 k~A~~~sskEme~W~ss~E~LE~kK~EleiEs~~v~eAr~~Ln~sIeh~vEdDkrEKe~l~kkkd~L~~EL~~LL~lVk~  383 (533)
                      +++.... -+|-+|...++..-.-.      ..                      |-+...|+-.....++++.++.+.+
T Consensus      1350 r~lsk~~-~e~~~~~~k~e~~~~~~------~e----------------------elee~kk~l~~~lq~~qe~~e~~~~ 1400 (1930)
T KOG0161|consen 1350 RKLSKAN-AELAQWKKKFEEEVLQR------LE----------------------ELEELKKKLQQRLQELEEQIEAANA 1400 (1930)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHH------HH----------------------HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4444433 35667765544322111      01                      1222223333333444444444444


Q ss_pred             hhhhhhhhcch-HHHHHHH------HHHHhhhhhhhhhhhhhchhhHHHHHHhhhhhhHHhhhhHHHHhHhhhhhhhccc
Q 009482          384 KEKEIAENDSN-IRAVEER------ISIVVSDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGT  456 (533)
Q Consensus       384 KE~EIAeNds~-IkaV~er------Is~VVS~F~e~QssId~k~~~Lqs~lsq~dletEaL~lKkkeID~fls~ee~~ga  456 (533)
                      +...+-..-.+ .++++-.      ...+++.-..       |..+....+...+.-.+.|+   .++|.......+.+.
T Consensus      1401 ~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~-------k~k~f~k~l~e~k~~~e~l~---~Eld~aq~e~r~~~t 1470 (1930)
T KOG0161|consen 1401 KNASLEKAKNRLQQELEDLQLDLERSRAAVAALEK-------KQKRFEKLLAEWKKKLEKLQ---AELDAAQRELRQLST 1470 (1930)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHH
Confidence            44444222222 1222222      2222333333       33333333333333333333   244445555555566


Q ss_pred             chHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 009482          457 KLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQV  523 (533)
Q Consensus       457 kLRe~a~~s~~EAk~~qe~V~lRR~LassIlKSrEdk~~L~k~EEel~~dvQ~LrQqvS~AR~SLQE  523 (533)
                      ++.-+.+.-.+-.....++....++|.+.|.+.-..+..+-|.=.++-.+...+.++..+-++.|-|
T Consensus      1471 el~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeE 1537 (1930)
T KOG0161|consen 1471 ELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEE 1537 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666554444445555556666666776666666655555545544444455554444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	533
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 5e-11
 Identities = 66/520 (12%), Positives = 150/520 (28%), Gaps = 154/520 (29%)

Query: 3   DDEMNSLFEGMVLFTPSQLAAEQSLEEDDVPKANPNP------NKSESPAKSNDIDTCIE 56
               N L +G++    + +A +       V                 SP      +T +E
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALD-VCLSYKVQCKMDFKIFWLNLKNCNSP------ETVLE 200

Query: 57  AAVSSEPLEENLFSDLTLQLQTQPQSSPSITYTKTKSSRKKKRAAGLRIGYGRDTTPHSS 116
                  L+  L   +     ++   S +I         + +R    +        P+ +
Sbjct: 201 ------MLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--------PYEN 245

Query: 117 SAPDDDDAGDDD-----DVTCTI-----DEADVDAEASSKNSYSSISVPV---------- 156
                 +  +       +++C I      +   D  +++  ++ S+              
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 157 ----VVNEINNNDPHQ---------------------RFEYLRSVISDKLNRARELAASV 191
                ++    + P +                      ++  + V  DKL    E  +S+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE--SSL 363

Query: 192 SAARKDSIRRRRKA----ADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAET 247
           +       R+             + ++  S +   + ++ +                 + 
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS-DVMVV-----------VNKL 411

Query: 248 HQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDC-ASLLDHFSADASNSADTF---- 302
           H+ SL+   +  +    +I S +Y  L  ++  E     S++DH++   +  +D      
Sbjct: 412 HKYSLV--EKQPKESTISIPS-IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 303 ------------LKKAE-SLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSI 349
                       LK  E                 LE +KI           A   + N++
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE-QKI---RHDSTAWNASGSILNTL 524

Query: 350 EHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDF 409
           +      L+     YK                      I +ND       ER+   + DF
Sbjct: 525 Q-----QLK----FYKPY--------------------ICDND----PKYERLVNAILDF 551

Query: 410 --QEYQSSINAKY-DSLQSIISQLNLESEAMSMKKKEIDK 446
             +  ++ I +KY D L+  I+ +  +        K++ +
Sbjct: 552 LPKIEENLICSKYTDLLR--IALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 2e-09
 Identities = 63/492 (12%), Positives = 137/492 (27%), Gaps = 164/492 (33%)

Query: 139 VDAEASS-KNSYSSISVPVVVNE-INNNDPHQRFEYLRSVISDKLNRARELAASVSAARK 196
           +D E    +  Y  I + V  +  ++N D     +  +S++S +     E+         
Sbjct: 7   MDFETGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKE-----EI--------- 51

Query: 197 DSIRRRRKAADDVELASLRHSQLEKQLDEACEAEDFEAAQRISDLLAAAETHQQSLLIAL 256
                     D +         +          +      R+   L    + Q+ +    
Sbjct: 52  ----------DHI---------IM-------SKDAVSGTLRLFWTL---LSKQEEM---- 78

Query: 257 RDAEAHCDAIDSKMYDVLVSQIAAE-QDCASLLDHFSADAS---NSADTF---------- 302
              +   + +    Y  L+S I  E +  + +   +        N    F          
Sbjct: 79  --VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 303 ---LKKA-ESLSSEE------ME---K-WLASTEALEGRKIE------------------ 330
              L++A   L   +      +    K W+A  +     K++                  
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVAL-DVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 331 ---LEIESHLVNEARAVLNNSIEHSVEDDLREKEILYKKKDILTNELQK--LLAL--VRD 383
              LE+   L+ +      +  +HS    LR   I  + + +L ++  +  LL L  V++
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN 255

Query: 384 KE-----------------KEIAENDSNIRAVEERISIVVSDFQEYQS-SINAKYDSLQS 425
            +                 K++ +  S        +          +  S+  KY  L  
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY--LDC 313

Query: 426 IISQLNLESE-----AMSMKKKEIDKFLNDEVDR--------GTKLKELARVSADEAKEY 472
               L  E        +S+    I + + D +            KL  +   S +  +  
Sbjct: 314 RPQDLPREVLTTNPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 473 WEVVELRRSLMS-SILKSREDKVKL-AKT-----EEKLSAEVQTLQQEASAARASL---- 521
               E R+     S+         +          + + ++V  +  +    + SL    
Sbjct: 370 ----EYRKMFDRLSVF--PPS-AHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQ 420

Query: 522 QVNFTSQLFYGI 533
               T  +   I
Sbjct: 421 PKESTISI-PSI 431

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 2e-06
 Identities = 37/207 (17%), Positives = 68/207 (32%), Gaps = 49/207 (23%)

Query: 351 HSVEDDLREKEILYKKKDILTNELQKLLA-----LVRDKEKEI---AENDS--NIRAVEE 400
           H    D    E  Y+ KDIL+      +       V+D  K I    E D     +    
Sbjct: 3   HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62

Query: 401 RISIVVSDFQEYQSSINAKY--DSLQS----IISQLNLESEAMSMKKK----EIDKFLND 450
               +       Q  +  K+  + L+     ++S +  E    SM  +    + D+  ND
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 451 EVDRGTKLKELARVSADEAKEYWEVVELRRSLMSSILKSREDKVKL------AKTEEKLS 504
                 K      VS  +       ++LR++L+   L+     V +       KT   ++
Sbjct: 123 -NQVFAKYN----VSRLQ-----PYLKLRQALLE--LRP-AKNVLIDGVLGSGKT--WVA 167

Query: 505 AEVQTLQQEASAARASLQVNFTSQLFY 531
            +V             +Q     ++F+
Sbjct: 168 LDV--CLSY------KVQCKMDFKIFW 186

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 56/318 (17%), Positives = 114/318 (35%), Gaps = 24/318 (7%)

Query: 168  QRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEAC 227
            +  E   + + ++ N  +E   + +    ++   R + A        +  +LE+ L E  
Sbjct: 881  KELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLA-------AKKQELEEILHEME 933

Query: 228  EAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCASL 287
               + E  +R   L A  +  QQ     + D E   +  ++    + + ++ A+     +
Sbjct: 934  ARIE-EEEERSQQLQAEKKKMQQ----QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 288  LDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNN 347
             D        +    L K   L  E +     +    E +   L             + +
Sbjct: 989  EDDILIMEDQNNK--LTKERKLLEERVSDLTTNLAEEEEKAKNLTKL----KNKHESMIS 1042

Query: 348  SIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVS 407
             +E  ++ + + ++ L K K  L  E   L   + + + +IAE  + +   EE +   ++
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 408  DFQEYQSSIN---AKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARV 464
              ++  S  N    K   L+S IS L    E +  +K   +K    + D   +L+ L   
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQ---EDLESEKAARNKAEKQKRDLSEELEALKTE 1159

Query: 465  SADEAKEYWEVVELRRSL 482
              D         ELR S 
Sbjct: 1160 LEDTLDTTATQQELRGSD 1177

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 53/357 (14%), Positives = 127/357 (35%), Gaps = 39/357 (10%)

Query: 167  HQRFEYLRSVISDKLNRARELAASVSAARKDSIRRRRKAADDVELASLRHSQLEKQLDEA 226
              R E       ++L R +E      A  K+  ++  +     E  +L   +L+ + +  
Sbjct: 852  VTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQL---CEEKNLLQEKLQAETELY 908

Query: 227  CEAEDFEAAQRISDLLAAAETHQQSLLIALRDAEAHCDAIDSKMYDVLVSQIAAEQDCAS 286
             EAE  E   R++      E     +   + + E     + ++           +Q    
Sbjct: 909  AEAE--EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK-------MQQQMLD 959

Query: 287  LLDHFSADASNSADTFLKKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLN 346
            L +              + A      E        + +E   + +E +++ + + R +L 
Sbjct: 960  LEEQLEE---------EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010

Query: 347  NSIEHSVEDDLREKEILYKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVV 406
              +   +  +L E+E   +K   LT    K  +++ + E  + + + + + +E+    + 
Sbjct: 1011 ERVS-DLTTNLAEEE---EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 407  SDFQEYQSSINAKYDSLQSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSA 466
             +  +    I      LQ+ I++L      ++ K++E+   L        +L++      
Sbjct: 1067 GESSDLHEQI----AELQAQIAELK---AQLAKKEEELQAAL-------ARLEDETSQKN 1112

Query: 467  DEAKEYWEVVELRRSLMSSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQV 523
            +  K+  E+      L   +   +  + K  K +  LS E++ L+ E      +   
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 30/226 (13%), Positives = 77/226 (34%), Gaps = 21/226 (9%)

Query: 304  KKAESLSSEEMEKWLASTEALEGRKIELEIESHLVNEARAVLNNSIEHSVEDDLREKEIL 363
            +    +  + +  WLA        K  + ++       R ++       ++ + R  E  
Sbjct: 864  EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC----CYRRMMAKRELKKLKIEARSVERY 919

Query: 364  YKKKDILTNELQKLLALVRDKEKEIAENDSNIRAVEERISIVVSDFQEYQSSINAKYDSL 423
             K    L N++ +L       +++I E         +    ++      + + + + + L
Sbjct: 920  KKLHIGLENKIMQL-------QRKIDEQ-------NKEYKSLLEKMNNLEITYSTETEKL 965

Query: 424  QSIISQLNLESEAMSMKKKEIDKFLNDEVDRGTKLKELARVSADEAKEYWEVVELRRSLM 483
            +S + +L +  E        +   L +E+ +  K     +      +E     + +    
Sbjct: 966  RSDVERLRMSEEEAKNATNRVLS-LQEEIAKLRKELHQTQTEKKTIEE--WADKYKHETE 1022

Query: 484  SSILKSREDKVKLAKTEEKLSAEVQTLQQEASAARASLQVNFTSQL 529
              + + +E    L   +E+L+  +    +E +       V  T QL
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	533
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.85
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.71
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	89.21
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	87.43

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.85  E-value=0.69  Score=52.07  Aligned_cols=12  Identities=17%  Similarity=0.111  Sum_probs=6.2

Q ss_pred             chhhhHHHHHHH
Q 009482          165 DPHQRFEYLRSV  176 (533)
Q Consensus       165 ~~~erl~~lrsq  176 (533)
                      |.-..|+.+|..
T Consensus       778 g~l~~LE~~r~~  789 (1184)
T 1i84_S          778 GVLAHLEEERDL  789 (1184)
T ss_dssp             THHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            344446665553

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.71  E-value=7.9  Score=36.42  Aligned_cols=25  Identities=12%  Similarity=0.279  Sum_probs=13.8

Q ss_pred             HHHHHHHHHhhhhhhchhhhhHHHH
Q 009482          249 QQSLLIALRDAEAHCDAIDSKMYDV  273 (533)
Q Consensus       249 k~~ll~aLRdAE~~~DsvD~kmq~v  273 (533)
                      +...|.-|-.-+...|.+...+.+.
T Consensus         6 ~L~~L~~LQ~lD~~i~~l~~~~~~l   30 (256)
T 3na7_A            6 HLKQLIEISHLDKEIDSLEPLIREK   30 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555555566666665555553

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=89.21  E-value=9.7  Score=32.53  Aligned_cols=18  Identities=28%  Similarity=0.407  Sum_probs=6.8

Q ss_pred             hhhhhhhcchHHHHHHHH
Q 009482          385 EKEIAENDSNIRAVEERI  402 (533)
Q Consensus       385 E~EIAeNds~IkaV~erI  402 (533)
                      +.++......+..++.++
T Consensus       222 ~~~l~~l~~~~~~~~~~~  239 (284)
T 1c1g_A          222 EEEIKVLSDKLKEAETRA  239 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00